Query 004772
Match_columns 731
No_of_seqs 478 out of 4022
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-52 3.8E-57 399.8 13.6 178 5-185 24-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 7.5E-52 2.6E-56 388.7 13.6 169 13-186 5-173 (176)
3 3ozi_A L6TR; plant TIR domain, 100.0 7.6E-41 2.6E-45 318.4 10.6 177 201-378 25-202 (204)
4 3jrn_A AT1G72930 protein; TIR 100.0 1E-40 3.4E-45 313.2 11.1 168 207-378 4-172 (176)
5 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-38 4.7E-43 362.3 21.0 297 389-695 131-472 (549)
6 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-35 2.1E-39 365.2 27.3 305 380-694 118-452 (1249)
7 1z6t_A APAF-1, apoptotic prote 100.0 4E-34 1.4E-38 329.8 22.8 328 380-719 118-496 (591)
8 1vt4_I APAF-1 related killer D 100.0 1.5E-33 5.2E-38 325.2 18.4 296 386-712 128-456 (1221)
9 3h16_A TIR protein; bacteria T 100.0 2.2E-32 7.4E-37 256.5 6.2 136 11-152 15-150 (154)
10 3h16_A TIR protein; bacteria T 99.9 7.2E-28 2.5E-32 225.7 6.5 123 206-331 15-137 (154)
11 3ub2_A TOLL/interleukin-1 rece 99.9 4E-25 1.4E-29 203.7 2.2 107 10-119 4-112 (146)
12 3ub2_A TOLL/interleukin-1 rece 99.9 9.8E-23 3.3E-27 187.7 3.4 108 206-317 5-114 (146)
13 1fyx_A TOLL-like receptor 2; b 99.8 2.3E-22 8E-27 186.5 1.2 103 14-119 3-110 (149)
14 2js7_A Myeloid differentiation 99.8 1.1E-21 3.7E-26 183.9 4.0 101 13-116 13-117 (160)
15 2j67_A TOLL like receptor 10; 99.8 2.2E-21 7.4E-26 184.6 3.3 100 12-114 31-134 (178)
16 1t3g_A X-linked interleukin-1 99.8 5.6E-21 1.9E-25 178.8 5.3 102 15-117 1-115 (159)
17 2qen_A Walker-type ATPase; unk 99.8 1.5E-17 5.1E-22 178.0 24.4 289 380-688 6-349 (350)
18 2js7_A Myeloid differentiation 99.8 7.5E-20 2.6E-24 171.3 4.4 101 209-312 14-117 (160)
19 2j67_A TOLL like receptor 10; 99.8 1.3E-19 4.5E-24 172.3 2.4 100 207-309 31-133 (178)
20 1fyx_A TOLL-like receptor 2; b 99.8 5.5E-20 1.9E-24 170.5 -0.2 98 209-309 3-103 (149)
21 2fna_A Conserved hypothetical 99.7 3E-16 1E-20 168.2 26.7 283 381-687 8-356 (357)
22 1t3g_A X-linked interleukin-1 99.7 9.7E-19 3.3E-23 163.6 5.7 100 211-311 2-113 (159)
23 1w5s_A Origin recognition comp 99.7 1.3E-15 4.4E-20 166.9 21.5 281 383-673 19-371 (412)
24 2qby_B CDC6 homolog 3, cell di 99.6 3.1E-13 1.1E-17 146.5 25.7 277 385-673 19-339 (384)
25 2qby_A CDC6 homolog 1, cell di 99.6 3.2E-13 1.1E-17 146.2 23.5 280 383-673 17-348 (386)
26 1fnn_A CDC6P, cell division co 99.5 2.3E-12 7.9E-17 139.7 25.3 300 384-694 15-387 (389)
27 2v1u_A Cell division control p 99.5 1.7E-12 5.7E-17 140.6 22.9 279 383-673 16-351 (387)
28 3j0a_A TOLL-like receptor 5; m 99.5 3E-14 1E-18 170.5 7.4 102 13-117 667-775 (844)
29 1njg_A DNA polymerase III subu 99.3 4.5E-11 1.5E-15 120.0 19.1 196 383-590 20-231 (250)
30 3j0a_A TOLL-like receptor 5; m 99.3 1.2E-12 4E-17 156.8 4.6 102 208-312 667-774 (844)
31 2chg_A Replication factor C sm 99.3 1.1E-10 3.7E-15 115.5 16.8 189 382-590 13-207 (226)
32 1hqc_A RUVB; extended AAA-ATPa 99.1 2E-08 6.7E-13 105.8 25.3 260 382-686 8-311 (324)
33 1sxj_B Activator 1 37 kDa subu 99.0 3.3E-09 1.1E-13 111.6 16.2 183 382-586 17-209 (323)
34 1iqp_A RFCS; clamp loader, ext 99.0 5.9E-09 2E-13 109.8 17.4 189 382-590 21-215 (327)
35 2chq_A Replication factor C sm 98.9 3.3E-08 1.1E-12 103.6 16.9 180 382-589 13-206 (319)
36 1jr3_A DNA polymerase III subu 98.9 5.9E-08 2E-12 104.2 18.4 195 383-589 13-223 (373)
37 3pfi_A Holliday junction ATP-d 98.8 9.4E-07 3.2E-11 93.5 24.7 250 383-677 26-318 (338)
38 3bos_A Putative DNA replicatio 98.7 6.7E-08 2.3E-12 96.7 11.5 175 383-589 25-219 (242)
39 1jbk_A CLPB protein; beta barr 98.7 8.7E-08 3E-12 92.0 11.0 50 384-435 20-69 (195)
40 3te6_A Regulatory protein SIR3 98.6 8E-07 2.7E-11 92.2 17.3 162 388-556 22-212 (318)
41 1sxj_D Activator 1 41 kDa subu 98.6 4.3E-07 1.5E-11 96.6 15.7 195 382-588 33-236 (353)
42 2z4s_A Chromosomal replication 98.6 2.2E-07 7.5E-12 101.9 12.6 183 385-588 104-307 (440)
43 1l8q_A Chromosomal replication 98.6 1.2E-06 4.1E-11 92.1 17.5 180 384-586 9-207 (324)
44 3h4m_A Proteasome-activating n 98.6 1.2E-06 4.2E-11 90.1 16.8 181 382-588 13-232 (285)
45 3pvs_A Replication-associated 98.6 1.1E-06 3.6E-11 96.3 17.0 182 382-589 22-217 (447)
46 3uk6_A RUVB-like 2; hexameric 98.6 1.2E-06 4.1E-11 93.8 17.2 197 385-588 43-304 (368)
47 1sxj_E Activator 1 40 kDa subu 98.5 3.1E-07 1.1E-11 97.9 12.2 197 383-588 11-238 (354)
48 1sxj_A Activator 1 95 kDa subu 98.5 2.5E-06 8.5E-11 95.6 18.6 190 382-586 35-251 (516)
49 3d8b_A Fidgetin-like protein 1 98.5 6.6E-06 2.2E-10 87.6 19.6 186 381-589 79-297 (357)
50 2qz4_A Paraplegin; AAA+, SPG7, 98.4 9.2E-06 3.2E-10 82.2 19.5 183 385-589 5-224 (262)
51 3eie_A Vacuolar protein sortin 98.4 4.2E-06 1.4E-10 87.8 16.8 186 381-589 13-230 (322)
52 2qp9_X Vacuolar protein sortin 98.4 4E-06 1.4E-10 89.2 16.5 182 383-588 48-262 (355)
53 3b9p_A CG5977-PA, isoform A; A 98.4 1.1E-05 3.8E-10 83.5 18.4 180 382-588 17-234 (297)
54 2zan_A Vacuolar protein sortin 98.3 2.2E-05 7.5E-10 86.1 20.5 186 381-588 129-346 (444)
55 1d2n_A N-ethylmaleimide-sensit 98.3 6.8E-06 2.3E-10 83.9 15.1 166 386-578 33-228 (272)
56 3vfd_A Spastin; ATPase, microt 98.3 8.2E-06 2.8E-10 88.0 16.0 185 381-588 110-327 (389)
57 3syl_A Protein CBBX; photosynt 98.3 4.7E-06 1.6E-10 86.8 13.6 147 387-556 32-218 (309)
58 1a5t_A Delta prime, HOLB; zinc 98.3 1.8E-05 6.2E-10 83.4 18.1 178 392-586 8-204 (334)
59 1in4_A RUVB, holliday junction 98.3 8.8E-05 3E-09 78.1 23.3 255 383-680 22-318 (334)
60 2p65_A Hypothetical protein PF 98.3 1.2E-06 4.2E-11 83.4 8.1 50 384-435 20-69 (187)
61 3u61_B DNA polymerase accessor 98.3 1.5E-05 5E-10 83.7 16.8 178 382-588 22-217 (324)
62 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.3E-05 8E-10 82.0 18.0 183 383-589 9-225 (322)
63 1sxj_C Activator 1 40 kDa subu 98.2 1.8E-05 6.1E-10 83.7 15.3 181 383-585 22-210 (340)
64 3n70_A Transport activator; si 98.1 5.6E-06 1.9E-10 75.9 8.8 47 387-433 2-48 (145)
65 3cf0_A Transitional endoplasmi 98.1 3.5E-05 1.2E-09 79.9 15.0 174 384-582 13-223 (301)
66 3pxg_A Negative regulator of g 98.1 3.1E-05 1.1E-09 85.5 14.6 148 383-555 177-338 (468)
67 4b4t_J 26S protease regulatory 98.0 4.9E-05 1.7E-09 80.8 14.7 169 385-579 147-353 (405)
68 1ofh_A ATP-dependent HSL prote 98.0 9.7E-05 3.3E-09 76.6 16.9 48 387-434 16-75 (310)
69 3hu3_A Transitional endoplasmi 98.0 3.5E-05 1.2E-09 85.2 13.8 179 386-588 204-416 (489)
70 1qvr_A CLPB protein; coiled co 98.0 2.8E-05 9.7E-10 92.5 13.6 51 383-435 167-217 (854)
71 4b4t_H 26S protease regulatory 98.0 5.3E-05 1.8E-09 81.6 13.8 170 384-579 207-414 (467)
72 2w58_A DNAI, primosome compone 97.9 1.9E-05 6.6E-10 76.5 8.9 60 385-444 24-89 (202)
73 4b4t_K 26S protease regulatory 97.9 3.9E-05 1.3E-09 82.7 11.7 54 384-437 170-234 (428)
74 2gno_A DNA polymerase III, gam 97.9 6.2E-05 2.1E-09 77.9 12.5 144 390-555 1-152 (305)
75 4b4t_L 26S protease subunit RP 97.9 7.1E-05 2.4E-09 80.8 13.1 170 383-579 178-386 (437)
76 1ojl_A Transcriptional regulat 97.9 0.00019 6.5E-09 74.3 15.9 48 386-433 2-49 (304)
77 2bjv_A PSP operon transcriptio 97.9 0.00017 5.7E-09 73.1 15.2 49 386-434 6-54 (265)
78 2r62_A Cell division protease 97.9 2.2E-05 7.6E-10 79.8 8.6 152 383-555 8-196 (268)
79 4b4t_M 26S protease regulatory 97.9 6.2E-05 2.1E-09 81.2 12.1 171 382-579 177-386 (434)
80 3ec2_A DNA replication protein 97.9 4.3E-05 1.5E-09 72.6 9.7 120 386-524 10-142 (180)
81 4fcw_A Chaperone protein CLPB; 97.8 0.00016 5.5E-09 75.1 14.4 50 387-436 18-74 (311)
82 1lv7_A FTSH; alpha/beta domain 97.8 0.00012 4.3E-09 73.7 12.6 181 383-587 9-225 (257)
83 3pxi_A Negative regulator of g 97.8 0.00027 9.3E-09 83.0 16.8 150 382-555 176-338 (758)
84 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00015 5.2E-09 85.2 14.7 151 384-555 184-362 (758)
85 4b4t_I 26S protease regulatory 97.7 0.0001 3.5E-09 78.7 10.8 171 383-579 179-387 (437)
86 2c9o_A RUVB-like 1; hexameric 97.7 0.00031 1.1E-08 77.2 14.9 50 385-434 36-88 (456)
87 3co5_A Putative two-component 97.7 2.6E-05 8.7E-10 71.2 4.4 47 387-433 5-51 (143)
88 2kjq_A DNAA-related protein; s 97.7 6.3E-05 2.1E-09 69.1 7.0 36 409-444 36-71 (149)
89 2ce7_A Cell division protein F 97.7 0.0013 4.4E-08 72.1 18.2 171 385-580 15-221 (476)
90 3cf2_A TER ATPase, transitiona 97.5 0.0002 7E-09 83.0 10.0 171 386-580 204-407 (806)
91 3pxi_A Negative regulator of g 97.5 0.0004 1.4E-08 81.6 12.4 146 386-555 491-675 (758)
92 3t15_A Ribulose bisphosphate c 97.4 0.00057 2E-08 70.3 11.0 30 408-437 35-64 (293)
93 1ixz_A ATP-dependent metallopr 97.4 0.0016 5.3E-08 65.4 13.3 51 384-434 14-74 (254)
94 1iy2_A ATP-dependent metallopr 97.4 0.0017 5.9E-08 66.1 13.7 53 382-434 36-98 (278)
95 1eiw_A Hypothetical protein MT 97.3 0.00023 8E-09 61.0 4.9 71 15-110 3-73 (111)
96 2qgz_A Helicase loader, putati 97.3 0.00066 2.2E-08 70.4 9.3 53 392-444 134-188 (308)
97 1eiw_A Hypothetical protein MT 97.2 0.00045 1.5E-08 59.2 5.8 71 210-306 3-73 (111)
98 2r44_A Uncharacterized protein 97.2 0.003 1E-07 66.1 13.1 47 386-436 27-73 (331)
99 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0088 3E-07 65.9 16.8 169 384-580 29-236 (499)
100 1um8_A ATP-dependent CLP prote 97.1 0.0022 7.4E-08 68.5 11.5 26 409-434 72-97 (376)
101 1ypw_A Transitional endoplasmi 97.0 0.0019 6.3E-08 76.0 10.7 148 385-555 203-385 (806)
102 3m6a_A ATP-dependent protease 96.9 0.011 3.6E-07 66.3 15.2 50 387-436 82-135 (543)
103 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0022 7.4E-08 75.3 8.7 48 386-433 458-512 (758)
104 2x8a_A Nuclear valosin-contain 96.6 0.045 1.5E-06 55.4 16.3 148 386-555 10-191 (274)
105 1qvr_A CLPB protein; coiled co 96.6 0.0087 3E-07 71.1 12.5 49 387-435 559-614 (854)
106 1jr3_D DNA polymerase III, del 96.6 0.045 1.6E-06 57.3 16.5 165 397-588 8-186 (343)
107 1ye8_A Protein THEP1, hypothet 96.3 0.055 1.9E-06 50.8 13.4 24 411-434 2-25 (178)
108 3cf2_A TER ATPase, transitiona 96.3 0.0045 1.5E-07 71.8 6.9 52 385-436 476-538 (806)
109 1g5t_A COB(I)alamin adenosyltr 96.3 0.011 3.7E-07 56.2 8.4 114 410-525 29-163 (196)
110 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0032 1.1E-07 64.6 4.9 24 409-432 123-146 (331)
111 2cvh_A DNA repair and recombin 96.1 0.01 3.4E-07 57.7 7.6 33 409-444 20-52 (220)
112 2b8t_A Thymidine kinase; deoxy 96.0 0.004 1.4E-07 60.9 3.8 106 409-525 12-126 (223)
113 3hr8_A Protein RECA; alpha and 95.7 0.025 8.6E-07 59.3 8.9 49 396-444 47-96 (356)
114 2eyu_A Twitching motility prot 95.7 0.012 3.9E-07 59.3 6.1 110 409-526 25-134 (261)
115 1rz3_A Hypothetical protein rb 95.7 0.014 4.8E-07 56.1 6.4 45 391-435 3-48 (201)
116 3jvv_A Twitching mobility prot 95.6 0.016 5.6E-07 60.9 7.2 110 409-527 123-233 (356)
117 1qhx_A CPT, protein (chloramph 95.6 0.0053 1.8E-07 57.6 3.0 25 410-434 4-28 (178)
118 3c8u_A Fructokinase; YP_612366 95.5 0.011 3.8E-07 57.1 4.9 40 395-434 8-47 (208)
119 3dm5_A SRP54, signal recogniti 95.5 0.09 3.1E-06 56.6 12.2 36 408-443 99-134 (443)
120 1u0j_A DNA replication protein 95.5 0.035 1.2E-06 55.5 8.4 39 395-433 90-128 (267)
121 3hws_A ATP-dependent CLP prote 95.4 0.0097 3.3E-07 63.1 4.3 47 388-434 17-76 (363)
122 3kb2_A SPBC2 prophage-derived 95.3 0.0087 3E-07 55.6 3.3 25 410-434 2-26 (173)
123 1g8p_A Magnesium-chelatase 38 95.2 0.012 4.1E-07 61.8 4.5 51 382-434 20-70 (350)
124 3hyn_A Putative signal transdu 95.2 0.069 2.4E-06 49.1 8.6 103 17-126 6-132 (189)
125 1odf_A YGR205W, hypothetical 3 95.2 0.019 6.4E-07 58.7 5.5 30 406-435 28-57 (290)
126 3tlx_A Adenylate kinase 2; str 95.1 0.019 6.4E-07 57.1 5.3 43 391-433 11-53 (243)
127 3upu_A ATP-dependent DNA helic 95.1 0.05 1.7E-06 59.5 9.3 29 410-438 46-74 (459)
128 1vma_A Cell division protein F 95.1 0.069 2.4E-06 54.8 9.7 36 408-443 103-138 (306)
129 3io5_A Recombination and repai 95.1 0.035 1.2E-06 56.8 7.2 34 411-444 30-65 (333)
130 1u94_A RECA protein, recombina 95.1 0.039 1.3E-06 58.0 7.9 36 409-444 63-98 (356)
131 2zr9_A Protein RECA, recombina 95.1 0.029 1E-06 58.9 6.9 36 409-444 61-96 (349)
132 3trf_A Shikimate kinase, SK; a 95.0 0.012 4E-07 55.6 3.3 26 409-434 5-30 (185)
133 3vaa_A Shikimate kinase, SK; s 94.9 0.013 4.4E-07 56.2 3.4 26 409-434 25-50 (199)
134 3uie_A Adenylyl-sulfate kinase 94.9 0.022 7.7E-07 54.5 5.1 27 408-434 24-50 (200)
135 1ly1_A Polynucleotide kinase; 94.9 0.013 4.6E-07 54.8 3.4 23 410-432 3-25 (181)
136 1nks_A Adenylate kinase; therm 94.9 0.021 7.2E-07 54.0 4.8 26 410-435 2-27 (194)
137 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.015 5.2E-07 64.0 4.0 44 387-434 23-66 (500)
138 2rhm_A Putative kinase; P-loop 94.8 0.018 6E-07 54.7 4.0 25 409-433 5-29 (193)
139 3hyn_A Putative signal transdu 94.8 0.066 2.3E-06 49.2 7.5 79 227-309 33-118 (189)
140 1v5w_A DMC1, meiotic recombina 94.8 0.065 2.2E-06 56.1 8.5 47 398-444 111-163 (343)
141 3lw7_A Adenylate kinase relate 94.7 0.014 4.7E-07 54.2 2.8 22 410-432 2-23 (179)
142 1xp8_A RECA protein, recombina 94.7 0.057 2E-06 56.9 7.9 36 409-444 74-109 (366)
143 3kl4_A SRP54, signal recogniti 94.6 0.1 3.4E-06 56.2 9.5 36 408-443 96-131 (433)
144 1ex7_A Guanylate kinase; subst 94.6 0.014 4.7E-07 55.4 2.4 28 410-437 2-29 (186)
145 1kag_A SKI, shikimate kinase I 94.5 0.015 5.3E-07 54.0 2.7 25 410-434 5-29 (173)
146 3e1s_A Exodeoxyribonuclease V, 94.5 0.11 3.8E-06 58.3 10.2 33 409-441 204-236 (574)
147 2yvu_A Probable adenylyl-sulfa 94.5 0.034 1.2E-06 52.5 5.1 28 409-436 13-40 (186)
148 1zp6_A Hypothetical protein AT 94.5 0.019 6.3E-07 54.5 3.2 24 409-432 9-32 (191)
149 1zuh_A Shikimate kinase; alpha 94.5 0.019 6.6E-07 53.2 3.3 26 409-434 7-32 (168)
150 1xjc_A MOBB protein homolog; s 94.5 0.031 1E-06 52.0 4.5 28 409-436 4-31 (169)
151 3iij_A Coilin-interacting nucl 94.4 0.016 5.3E-07 54.5 2.5 25 409-433 11-35 (180)
152 1kht_A Adenylate kinase; phosp 94.4 0.021 7.3E-07 53.9 3.5 26 410-435 4-29 (192)
153 3t61_A Gluconokinase; PSI-biol 94.4 0.018 6.1E-07 55.3 2.9 25 409-433 18-42 (202)
154 2ze6_A Isopentenyl transferase 94.4 0.023 7.7E-07 56.9 3.7 25 410-434 2-26 (253)
155 2q6t_A DNAB replication FORK h 94.4 0.19 6.4E-06 54.7 11.3 49 395-444 187-236 (444)
156 2r2a_A Uncharacterized protein 94.4 0.12 4E-06 49.5 8.5 22 411-432 7-28 (199)
157 1tev_A UMP-CMP kinase; ploop, 94.3 0.024 8.4E-07 53.6 3.7 25 409-433 3-27 (196)
158 3tqc_A Pantothenate kinase; bi 94.3 0.035 1.2E-06 57.4 4.9 47 388-434 69-117 (321)
159 2px0_A Flagellar biosynthesis 94.3 0.094 3.2E-06 53.6 8.1 36 409-444 105-141 (296)
160 1tue_A Replication protein E1; 94.2 0.034 1.2E-06 53.1 4.3 42 393-435 43-84 (212)
161 1knq_A Gluconate kinase; ALFA/ 94.2 0.027 9.4E-07 52.5 3.7 25 409-433 8-32 (175)
162 1via_A Shikimate kinase; struc 94.2 0.022 7.6E-07 53.2 3.1 24 411-434 6-29 (175)
163 2ewv_A Twitching motility prot 94.2 0.074 2.5E-06 56.3 7.4 108 409-525 136-244 (372)
164 2iyv_A Shikimate kinase, SK; t 94.2 0.019 6.4E-07 54.1 2.5 24 411-434 4-27 (184)
165 4eun_A Thermoresistant glucoki 94.2 0.025 8.5E-07 54.2 3.4 25 409-433 29-53 (200)
166 2vli_A Antibiotic resistance p 94.2 0.019 6.4E-07 54.0 2.5 26 409-434 5-30 (183)
167 1ukz_A Uridylate kinase; trans 94.2 0.028 9.7E-07 53.8 3.8 26 408-433 14-39 (203)
168 2c95_A Adenylate kinase 1; tra 94.2 0.025 8.7E-07 53.7 3.4 25 409-433 9-33 (196)
169 1kgd_A CASK, peripheral plasma 94.2 0.023 7.8E-07 53.5 3.0 26 409-434 5-30 (180)
170 2ga8_A Hypothetical 39.9 kDa p 94.1 0.036 1.2E-06 57.7 4.7 48 390-437 3-52 (359)
171 3cm0_A Adenylate kinase; ATP-b 94.1 0.032 1.1E-06 52.5 4.0 25 409-433 4-28 (186)
172 2dr3_A UPF0273 protein PH0284; 94.1 0.028 9.7E-07 55.5 3.7 36 409-444 23-58 (247)
173 2jaq_A Deoxyguanosine kinase; 94.1 0.026 8.7E-07 54.0 3.3 24 411-434 2-25 (205)
174 2bwj_A Adenylate kinase 5; pho 94.1 0.025 8.4E-07 53.9 3.1 26 409-434 12-37 (199)
175 2plr_A DTMP kinase, probable t 94.1 0.046 1.6E-06 52.5 5.1 29 409-437 4-32 (213)
176 3p32_A Probable GTPase RV1496/ 94.1 0.073 2.5E-06 56.0 7.1 43 395-437 65-107 (355)
177 1nn5_A Similar to deoxythymidy 94.1 0.041 1.4E-06 53.1 4.7 29 409-437 9-37 (215)
178 1qf9_A UMP/CMP kinase, protein 94.0 0.03 1E-06 52.9 3.7 26 409-434 6-31 (194)
179 3tau_A Guanylate kinase, GMP k 94.0 0.025 8.4E-07 54.7 3.0 27 409-435 8-34 (208)
180 1e6c_A Shikimate kinase; phosp 94.0 0.023 8E-07 52.7 2.7 25 410-434 3-27 (173)
181 1uj2_A Uridine-cytidine kinase 94.0 0.03 1E-06 55.8 3.7 27 408-434 21-47 (252)
182 1y63_A LMAJ004144AAA protein; 94.0 0.029 1E-06 52.9 3.4 24 409-432 10-33 (184)
183 1sky_E F1-ATPase, F1-ATP synth 94.0 0.082 2.8E-06 57.2 7.2 31 411-441 153-183 (473)
184 3a00_A Guanylate kinase, GMP k 93.9 0.022 7.6E-07 53.9 2.5 28 410-437 2-29 (186)
185 3dzd_A Transcriptional regulat 93.9 0.55 1.9E-05 49.5 13.5 48 386-433 129-176 (368)
186 1j8m_F SRP54, signal recogniti 93.9 0.31 1.1E-05 49.7 11.2 36 409-444 98-133 (297)
187 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.033 1.1E-06 55.9 3.7 26 409-434 4-29 (260)
188 2w0m_A SSO2452; RECA, SSPF, un 93.9 0.038 1.3E-06 54.0 4.1 36 409-444 23-58 (235)
189 2qor_A Guanylate kinase; phosp 93.9 0.025 8.5E-07 54.4 2.7 26 409-434 12-37 (204)
190 1uf9_A TT1252 protein; P-loop, 93.8 0.034 1.2E-06 53.1 3.6 26 407-432 6-31 (203)
191 2pt5_A Shikimate kinase, SK; a 93.8 0.034 1.2E-06 51.3 3.5 24 411-434 2-25 (168)
192 3fwy_A Light-independent proto 93.8 0.05 1.7E-06 56.1 5.0 37 408-444 47-83 (314)
193 3bh0_A DNAB-like replicative h 93.8 0.11 3.8E-06 53.6 7.7 37 408-444 67-103 (315)
194 1cke_A CK, MSSA, protein (cyti 93.8 0.033 1.1E-06 54.3 3.5 24 410-433 6-29 (227)
195 2wsm_A Hydrogenase expression/ 93.8 0.077 2.7E-06 51.3 6.1 45 390-436 13-57 (221)
196 2z0h_A DTMP kinase, thymidylat 93.8 0.088 3E-06 49.9 6.4 25 411-435 2-26 (197)
197 2bdt_A BH3686; alpha-beta prot 93.8 0.034 1.2E-06 52.6 3.4 23 410-432 3-25 (189)
198 2cdn_A Adenylate kinase; phosp 93.7 0.035 1.2E-06 53.1 3.5 26 409-434 20-45 (201)
199 2pbr_A DTMP kinase, thymidylat 93.7 0.035 1.2E-06 52.5 3.5 25 411-435 2-26 (195)
200 3umf_A Adenylate kinase; rossm 93.7 0.042 1.4E-06 53.4 4.0 27 407-433 27-53 (217)
201 2grj_A Dephospho-COA kinase; T 93.7 0.044 1.5E-06 52.2 4.0 26 408-433 11-36 (192)
202 3ice_A Transcription terminati 93.7 0.11 3.7E-06 54.6 7.2 29 409-437 174-202 (422)
203 1aky_A Adenylate kinase; ATP:A 93.7 0.035 1.2E-06 54.0 3.4 26 409-434 4-29 (220)
204 2p5t_B PEZT; postsegregational 93.7 0.056 1.9E-06 53.9 5.0 27 408-434 31-57 (253)
205 3asz_A Uridine kinase; cytidin 93.7 0.042 1.4E-06 53.0 3.9 27 408-434 5-31 (211)
206 1q57_A DNA primase/helicase; d 93.6 0.14 4.9E-06 56.6 8.7 36 409-444 242-278 (503)
207 3tr0_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 53.4 3.0 25 409-433 7-31 (205)
208 1g41_A Heat shock protein HSLU 93.6 0.052 1.8E-06 58.5 4.8 51 387-437 16-78 (444)
209 1gvn_B Zeta; postsegregational 93.6 0.039 1.3E-06 56.2 3.7 26 408-433 32-57 (287)
210 1ny5_A Transcriptional regulat 93.5 0.71 2.4E-05 49.0 13.6 47 387-433 138-184 (387)
211 2if2_A Dephospho-COA kinase; a 93.5 0.036 1.2E-06 53.1 3.1 21 411-431 3-23 (204)
212 2wwf_A Thymidilate kinase, put 93.5 0.039 1.3E-06 53.1 3.4 28 409-436 10-37 (212)
213 2j41_A Guanylate kinase; GMP, 93.5 0.038 1.3E-06 52.9 3.2 25 409-433 6-30 (207)
214 2qt1_A Nicotinamide riboside k 93.5 0.041 1.4E-06 52.9 3.5 26 408-433 20-45 (207)
215 3fb4_A Adenylate kinase; psych 93.4 0.042 1.4E-06 53.2 3.5 23 411-433 2-24 (216)
216 1zu4_A FTSY; GTPase, signal re 93.4 0.097 3.3E-06 54.1 6.4 36 408-443 104-139 (320)
217 2i1q_A DNA repair and recombin 93.4 0.08 2.7E-06 54.9 5.7 26 408-433 97-122 (322)
218 3ney_A 55 kDa erythrocyte memb 93.3 0.04 1.4E-06 52.6 3.1 26 409-434 19-44 (197)
219 2bbw_A Adenylate kinase 4, AK4 93.3 0.041 1.4E-06 54.6 3.3 26 409-434 27-52 (246)
220 2hf9_A Probable hydrogenase ni 93.3 0.076 2.6E-06 51.6 5.2 42 393-436 24-65 (226)
221 1jjv_A Dephospho-COA kinase; P 93.3 0.043 1.5E-06 52.7 3.2 22 410-431 3-24 (206)
222 1n0w_A DNA repair protein RAD5 93.3 0.058 2E-06 53.1 4.2 36 409-444 24-65 (243)
223 3k1j_A LON protease, ATP-depen 93.2 0.043 1.5E-06 62.3 3.6 51 382-436 37-87 (604)
224 2pez_A Bifunctional 3'-phospho 93.2 0.055 1.9E-06 50.6 3.8 27 409-435 5-31 (179)
225 1zd8_A GTP:AMP phosphotransfer 93.2 0.04 1.4E-06 53.9 2.9 25 409-433 7-31 (227)
226 4a74_A DNA repair and recombin 93.2 0.042 1.4E-06 53.6 3.1 26 409-434 25-50 (231)
227 3e70_C DPA, signal recognition 93.2 0.092 3.1E-06 54.5 5.8 30 407-436 127-156 (328)
228 3dl0_A Adenylate kinase; phosp 93.1 0.045 1.5E-06 53.0 3.2 23 411-433 2-24 (216)
229 1puj_A YLQF, conserved hypothe 93.1 0.78 2.7E-05 46.3 12.5 48 256-310 13-60 (282)
230 4gp7_A Metallophosphoesterase; 93.1 0.042 1.4E-06 51.2 2.7 21 409-429 9-29 (171)
231 1gtv_A TMK, thymidylate kinase 93.0 0.033 1.1E-06 53.7 2.1 25 411-435 2-26 (214)
232 1zak_A Adenylate kinase; ATP:A 93.0 0.041 1.4E-06 53.6 2.6 26 409-434 5-30 (222)
233 2zts_A Putative uncharacterize 92.9 0.077 2.6E-06 52.3 4.7 36 409-444 30-66 (251)
234 1rj9_A FTSY, signal recognitio 92.8 0.08 2.7E-06 54.3 4.7 29 408-436 101-129 (304)
235 1m7g_A Adenylylsulfate kinase; 92.8 0.068 2.3E-06 51.6 4.0 26 409-434 25-50 (211)
236 2jeo_A Uridine-cytidine kinase 92.8 0.065 2.2E-06 53.1 3.9 25 409-433 25-49 (245)
237 4e22_A Cytidylate kinase; P-lo 92.8 0.055 1.9E-06 53.9 3.3 26 409-434 27-52 (252)
238 3ake_A Cytidylate kinase; CMP 92.7 0.063 2.1E-06 51.4 3.5 24 411-434 4-27 (208)
239 1a7j_A Phosphoribulokinase; tr 92.7 0.045 1.6E-06 55.8 2.6 27 408-434 4-30 (290)
240 1xx6_A Thymidine kinase; NESG, 92.7 0.052 1.8E-06 51.6 2.8 108 409-525 8-118 (191)
241 4a1f_A DNAB helicase, replicat 92.7 0.21 7.1E-06 51.9 7.6 36 409-444 46-81 (338)
242 1lvg_A Guanylate kinase, GMP k 92.7 0.044 1.5E-06 52.5 2.2 26 409-434 4-29 (198)
243 2fz4_A DNA repair protein RAD2 92.6 0.48 1.6E-05 46.5 9.9 40 389-433 93-132 (237)
244 3d3q_A TRNA delta(2)-isopenten 92.6 0.063 2.2E-06 55.7 3.6 25 410-434 8-32 (340)
245 3aez_A Pantothenate kinase; tr 92.5 0.066 2.3E-06 55.2 3.5 29 407-435 88-116 (312)
246 2f6r_A COA synthase, bifunctio 92.4 0.069 2.4E-06 54.2 3.5 24 408-431 74-97 (281)
247 2ehv_A Hypothetical protein PH 92.4 0.091 3.1E-06 51.9 4.4 36 409-444 30-66 (251)
248 3be4_A Adenylate kinase; malar 92.4 0.06 2E-06 52.3 2.9 24 410-433 6-29 (217)
249 3bgw_A DNAB-like replicative h 92.4 0.3 1E-05 52.9 8.7 49 395-444 184-232 (444)
250 2v54_A DTMP kinase, thymidylat 92.3 0.068 2.3E-06 51.0 3.2 25 409-433 4-28 (204)
251 3nwj_A ATSK2; P loop, shikimat 92.3 0.054 1.8E-06 53.9 2.5 25 410-434 49-73 (250)
252 3cmu_A Protein RECA, recombina 92.3 0.15 5.1E-06 64.6 6.9 37 408-444 1426-1462(2050)
253 3r20_A Cytidylate kinase; stru 92.3 0.071 2.4E-06 52.3 3.3 26 409-434 9-34 (233)
254 2xb4_A Adenylate kinase; ATP-b 92.3 0.074 2.5E-06 51.9 3.5 23 411-433 2-24 (223)
255 1e4v_A Adenylate kinase; trans 92.3 0.073 2.5E-06 51.4 3.4 23 411-433 2-24 (214)
256 3b9q_A Chloroplast SRP recepto 92.3 0.11 3.8E-06 53.2 4.9 28 408-435 99-126 (302)
257 1znw_A Guanylate kinase, GMP k 92.3 0.065 2.2E-06 51.6 3.0 25 409-433 20-44 (207)
258 1vht_A Dephospho-COA kinase; s 92.3 0.079 2.7E-06 51.3 3.7 23 409-431 4-26 (218)
259 1np6_A Molybdopterin-guanine d 92.3 0.11 3.7E-06 48.5 4.4 27 409-435 6-32 (174)
260 2r8r_A Sensor protein; KDPD, P 92.3 0.11 3.7E-06 50.5 4.4 33 411-443 8-40 (228)
261 1htw_A HI0065; nucleotide-bind 92.3 0.13 4.3E-06 47.3 4.7 26 408-433 32-57 (158)
262 3crm_A TRNA delta(2)-isopenten 92.2 0.074 2.5E-06 54.8 3.4 26 409-434 5-30 (323)
263 2j9r_A Thymidine kinase; TK1, 92.2 0.14 4.7E-06 49.3 5.0 110 409-525 28-138 (214)
264 3end_A Light-independent proto 92.2 0.12 4.1E-06 53.0 5.0 37 408-444 40-76 (307)
265 1g8f_A Sulfate adenylyltransfe 92.1 0.11 3.8E-06 57.1 4.9 48 388-435 374-421 (511)
266 1yrb_A ATP(GTP)binding protein 92.1 0.14 4.8E-06 51.0 5.3 35 409-444 14-48 (262)
267 1ak2_A Adenylate kinase isoenz 92.0 0.082 2.8E-06 51.9 3.4 26 409-434 16-41 (233)
268 3sr0_A Adenylate kinase; phosp 92.0 0.089 3E-06 50.7 3.5 23 411-433 2-24 (206)
269 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.21 7.2E-06 51.8 6.6 81 410-501 172-252 (330)
270 3foz_A TRNA delta(2)-isopenten 92.0 0.083 2.8E-06 53.9 3.4 25 409-433 10-34 (316)
271 2xxa_A Signal recognition part 91.9 0.13 4.5E-06 55.5 5.1 37 408-444 99-136 (433)
272 1svm_A Large T antigen; AAA+ f 91.8 0.13 4.4E-06 54.4 4.9 36 398-433 158-193 (377)
273 2f1r_A Molybdopterin-guanine d 91.8 0.07 2.4E-06 49.7 2.5 27 410-436 3-29 (171)
274 1z6g_A Guanylate kinase; struc 91.8 0.066 2.3E-06 52.0 2.5 25 409-433 23-47 (218)
275 1cp2_A CP2, nitrogenase iron p 91.8 0.14 4.9E-06 51.2 5.0 35 410-444 2-36 (269)
276 3exa_A TRNA delta(2)-isopenten 91.8 0.079 2.7E-06 54.1 3.0 25 409-433 3-27 (322)
277 1s96_A Guanylate kinase, GMP k 91.8 0.076 2.6E-06 51.7 2.8 26 409-434 16-41 (219)
278 2orw_A Thymidine kinase; TMTK, 91.8 0.13 4.3E-06 48.6 4.3 27 410-436 4-30 (184)
279 3a8t_A Adenylate isopentenyltr 91.8 0.061 2.1E-06 55.6 2.1 26 409-434 40-65 (339)
280 2z43_A DNA repair and recombin 91.7 0.13 4.3E-06 53.4 4.6 36 409-444 107-148 (324)
281 2qmh_A HPR kinase/phosphorylas 91.6 0.077 2.6E-06 50.4 2.5 24 410-433 35-58 (205)
282 3lnc_A Guanylate kinase, GMP k 91.6 0.068 2.3E-06 52.4 2.3 25 409-433 27-52 (231)
283 1ltq_A Polynucleotide kinase; 91.6 0.098 3.3E-06 53.5 3.6 23 410-432 3-25 (301)
284 2rcn_A Probable GTPase ENGC; Y 91.6 0.99 3.4E-05 47.1 11.2 22 410-431 216-237 (358)
285 1cr0_A DNA primase/helicase; R 91.6 0.14 4.7E-06 52.3 4.6 36 409-444 35-71 (296)
286 2j37_W Signal recognition part 91.6 0.18 6.3E-06 55.3 5.9 37 408-444 100-136 (504)
287 2og2_A Putative signal recogni 91.5 0.15 5.1E-06 53.5 4.9 29 408-436 156-184 (359)
288 1sq5_A Pantothenate kinase; P- 91.5 0.11 3.9E-06 53.3 4.0 28 407-434 78-105 (308)
289 2i3b_A HCR-ntpase, human cance 91.5 0.091 3.1E-06 49.8 2.9 24 411-434 3-26 (189)
290 2ck3_D ATP synthase subunit be 91.5 0.57 2E-05 50.5 9.4 52 410-464 154-206 (482)
291 4eaq_A DTMP kinase, thymidylat 91.5 0.26 8.8E-06 48.2 6.3 27 409-435 26-52 (229)
292 1t9h_A YLOQ, probable GTPase E 91.4 0.32 1.1E-05 49.8 7.1 22 410-431 174-195 (307)
293 1ls1_A Signal recognition part 91.4 0.17 5.8E-06 51.7 5.0 36 408-443 97-132 (295)
294 4edh_A DTMP kinase, thymidylat 91.3 0.34 1.1E-05 46.8 6.9 28 409-436 6-33 (213)
295 2v3c_C SRP54, signal recogniti 91.3 0.088 3E-06 56.9 3.0 36 409-444 99-134 (432)
296 3zq6_A Putative arsenical pump 91.3 0.23 7.8E-06 51.4 6.0 36 409-444 14-49 (324)
297 2afh_E Nitrogenase iron protei 91.3 0.17 5.7E-06 51.4 5.0 36 409-444 2-37 (289)
298 1nlf_A Regulatory protein REPA 91.2 0.17 5.9E-06 51.1 4.8 27 409-435 30-56 (279)
299 2p67_A LAO/AO transport system 91.1 0.27 9.3E-06 51.3 6.4 30 407-436 54-83 (341)
300 3cr8_A Sulfate adenylyltranfer 91.0 0.17 6E-06 56.2 5.1 48 388-435 348-395 (552)
301 3b85_A Phosphate starvation-in 91.0 0.1 3.5E-06 50.3 2.8 23 410-432 23-45 (208)
302 1q3t_A Cytidylate kinase; nucl 90.9 0.13 4.4E-06 50.6 3.5 26 408-433 15-40 (236)
303 2yhs_A FTSY, cell division pro 90.8 0.18 6.2E-06 54.9 4.8 36 408-444 292-327 (503)
304 3io3_A DEHA2D07832P; chaperone 90.8 0.25 8.6E-06 51.6 5.7 37 408-444 17-55 (348)
305 3iqw_A Tail-anchored protein t 90.8 0.28 9.7E-06 50.9 6.1 37 408-444 15-51 (334)
306 3cmw_A Protein RECA, recombina 90.7 0.36 1.2E-05 60.3 7.9 36 409-444 732-767 (1706)
307 2r6a_A DNAB helicase, replicat 90.7 0.42 1.4E-05 52.0 7.7 36 409-444 203-239 (454)
308 1fx0_B ATP synthase beta chain 90.7 0.28 9.4E-06 53.2 6.0 52 410-464 166-218 (498)
309 3zvl_A Bifunctional polynucleo 90.6 0.092 3.2E-06 56.6 2.3 26 408-433 257-282 (416)
310 3ug7_A Arsenical pump-driving 90.6 0.41 1.4E-05 50.1 7.2 38 407-444 24-61 (349)
311 2onk_A Molybdate/tungstate ABC 90.6 0.13 4.3E-06 50.9 3.0 23 410-432 25-47 (240)
312 3lv8_A DTMP kinase, thymidylat 90.6 0.34 1.2E-05 47.5 6.1 35 409-443 27-62 (236)
313 2gks_A Bifunctional SAT/APS ki 90.5 0.3 1E-05 54.4 6.3 48 388-435 351-398 (546)
314 3eph_A TRNA isopentenyltransfe 90.5 0.15 5.1E-06 54.0 3.7 25 410-434 3-27 (409)
315 3tif_A Uncharacterized ABC tra 90.5 0.11 3.8E-06 51.1 2.5 23 409-431 31-53 (235)
316 2pcj_A ABC transporter, lipopr 90.5 0.11 3.7E-06 50.8 2.4 22 410-431 31-52 (224)
317 1u0l_A Probable GTPase ENGC; p 90.5 1.1 3.9E-05 45.6 10.3 33 395-432 160-192 (301)
318 1pzn_A RAD51, DNA repair and r 90.4 0.15 5E-06 53.5 3.5 26 408-433 130-155 (349)
319 3ld9_A DTMP kinase, thymidylat 90.4 0.4 1.4E-05 46.6 6.4 28 408-435 20-47 (223)
320 3kjh_A CO dehydrogenase/acetyl 90.2 0.22 7.6E-06 49.0 4.6 33 412-444 3-35 (254)
321 4dzz_A Plasmid partitioning pr 90.2 0.31 1.1E-05 46.3 5.4 35 410-444 2-37 (206)
322 2qm8_A GTPase/ATPase; G protei 90.1 0.37 1.3E-05 50.2 6.3 29 407-435 53-81 (337)
323 1m8p_A Sulfate adenylyltransfe 90.1 0.26 8.8E-06 55.2 5.4 28 408-435 395-422 (573)
324 2ocp_A DGK, deoxyguanosine kin 90.0 0.17 5.7E-06 49.9 3.4 26 409-434 2-27 (241)
325 3v9p_A DTMP kinase, thymidylat 90.0 0.37 1.3E-05 47.0 5.8 28 409-436 25-52 (227)
326 2cbz_A Multidrug resistance-as 90.0 0.13 4.3E-06 50.8 2.5 25 409-433 31-55 (237)
327 2axn_A 6-phosphofructo-2-kinas 90.0 0.25 8.5E-06 54.7 5.2 29 409-437 35-63 (520)
328 2d2e_A SUFC protein; ABC-ATPas 89.8 0.16 5.3E-06 50.5 3.0 23 410-432 30-52 (250)
329 1ypw_A Transitional endoplasmi 89.8 0.15 5.1E-06 59.8 3.3 53 385-437 476-539 (806)
330 4tmk_A Protein (thymidylate ki 89.8 0.48 1.6E-05 45.7 6.4 27 410-436 4-30 (213)
331 3gfo_A Cobalt import ATP-bindi 89.8 0.13 4.6E-06 51.8 2.5 22 410-431 35-56 (275)
332 1tq4_A IIGP1, interferon-induc 89.7 0.18 6.3E-06 53.9 3.7 36 396-431 56-91 (413)
333 1b0u_A Histidine permease; ABC 89.7 0.14 4.6E-06 51.4 2.5 23 409-431 32-54 (262)
334 3ea0_A ATPase, para family; al 89.7 0.32 1.1E-05 47.7 5.3 36 409-444 4-41 (245)
335 1ji0_A ABC transporter; ATP bi 89.6 0.14 4.8E-06 50.5 2.5 22 410-431 33-54 (240)
336 2zu0_C Probable ATP-dependent 89.6 0.17 5.7E-06 50.9 3.0 24 409-432 46-69 (267)
337 4g1u_C Hemin import ATP-bindin 89.5 0.14 4.9E-06 51.4 2.5 23 409-431 37-59 (266)
338 2ffh_A Protein (FFH); SRP54, s 89.5 0.3 1E-05 52.4 5.1 36 408-443 97-132 (425)
339 1g6h_A High-affinity branched- 89.5 0.14 4.9E-06 51.0 2.5 22 410-431 34-55 (257)
340 1oix_A RAS-related protein RAB 89.5 0.19 6.3E-06 47.5 3.1 24 409-432 29-52 (191)
341 4akg_A Glutathione S-transfera 89.4 1.7 5.7E-05 57.1 12.7 146 410-576 1268-1452(2695)
342 2pze_A Cystic fibrosis transme 89.4 0.15 5.2E-06 49.9 2.5 24 410-433 35-58 (229)
343 3cnl_A YLQF, putative uncharac 89.4 0.61 2.1E-05 46.5 7.1 29 256-284 11-39 (262)
344 2dyk_A GTP-binding protein; GT 89.4 0.21 7.3E-06 45.0 3.4 23 410-432 2-24 (161)
345 1sgw_A Putative ABC transporte 89.4 0.13 4.4E-06 49.8 1.9 23 410-432 36-58 (214)
346 2olj_A Amino acid ABC transpor 89.4 0.15 5.1E-06 51.1 2.5 23 409-431 50-72 (263)
347 1w36_D RECD, exodeoxyribonucle 89.4 0.4 1.4E-05 54.3 6.3 26 409-434 164-189 (608)
348 1mv5_A LMRA, multidrug resista 89.3 0.16 5.6E-06 50.1 2.7 23 409-431 28-50 (243)
349 2wji_A Ferrous iron transport 89.3 0.23 7.8E-06 45.5 3.6 22 410-431 4-25 (165)
350 2ff7_A Alpha-hemolysin translo 89.3 0.16 5.3E-06 50.5 2.5 22 410-431 36-57 (247)
351 3fdi_A Uncharacterized protein 89.2 0.21 7E-06 47.8 3.3 27 409-435 6-32 (201)
352 2v9p_A Replication protein E1; 89.2 0.26 8.9E-06 50.4 4.2 26 408-433 125-150 (305)
353 1vpl_A ABC transporter, ATP-bi 89.1 0.16 5.5E-06 50.6 2.5 23 409-431 41-63 (256)
354 3lda_A DNA repair protein RAD5 89.0 0.16 5.4E-06 54.2 2.5 36 397-432 166-201 (400)
355 2ghi_A Transport protein; mult 89.0 0.17 5.7E-06 50.7 2.5 24 409-432 46-69 (260)
356 2f9l_A RAB11B, member RAS onco 89.0 0.2 6.8E-06 47.5 3.0 24 409-432 5-28 (199)
357 2qi9_C Vitamin B12 import ATP- 89.0 0.17 5.8E-06 50.3 2.5 25 410-434 27-51 (249)
358 3hjn_A DTMP kinase, thymidylat 88.9 0.65 2.2E-05 44.1 6.6 34 411-444 2-35 (197)
359 3vkw_A Replicase large subunit 88.9 0.58 2E-05 50.2 6.8 25 407-431 159-183 (446)
360 2ixe_A Antigen peptide transpo 88.9 0.17 5.8E-06 50.9 2.5 23 409-431 45-67 (271)
361 3gmt_A Adenylate kinase; ssgci 88.9 0.22 7.7E-06 48.5 3.2 24 410-433 9-32 (230)
362 3tqf_A HPR(Ser) kinase; transf 88.8 0.23 7.9E-06 45.9 3.0 23 410-432 17-39 (181)
363 2yz2_A Putative ABC transporte 88.7 0.18 6.1E-06 50.7 2.5 23 409-431 33-55 (266)
364 2zej_A Dardarin, leucine-rich 88.7 0.17 5.9E-06 47.3 2.3 21 411-431 4-24 (184)
365 2ihy_A ABC transporter, ATP-bi 88.7 0.18 6.1E-06 51.0 2.5 23 410-432 48-70 (279)
366 2nq2_C Hypothetical ABC transp 88.7 0.18 6.2E-06 50.2 2.5 23 410-432 32-54 (253)
367 2h92_A Cytidylate kinase; ross 88.5 0.19 6.6E-06 48.5 2.6 24 410-433 4-27 (219)
368 2ce2_X GTPase HRAS; signaling 88.4 0.23 8E-06 44.8 2.9 22 411-432 5-26 (166)
369 4hlc_A DTMP kinase, thymidylat 88.3 0.4 1.4E-05 45.9 4.7 29 410-438 3-31 (205)
370 3cmu_A Protein RECA, recombina 88.3 0.56 1.9E-05 59.5 7.0 54 391-444 364-418 (2050)
371 1nij_A Hypothetical protein YJ 88.3 0.25 8.5E-06 51.0 3.4 26 408-433 3-28 (318)
372 2oze_A ORF delta'; para, walke 88.3 0.43 1.5E-05 48.5 5.2 48 394-444 22-72 (298)
373 3cmw_A Protein RECA, recombina 88.2 0.52 1.8E-05 59.0 6.5 50 395-444 368-418 (1706)
374 3cio_A ETK, tyrosine-protein k 88.1 0.63 2.2E-05 47.5 6.3 38 407-444 102-140 (299)
375 3fkq_A NTRC-like two-domain pr 88.1 0.41 1.4E-05 50.6 5.0 38 407-444 141-179 (373)
376 3kta_A Chromosome segregation 88.1 0.25 8.5E-06 46.1 3.0 23 411-433 28-50 (182)
377 1z2a_A RAS-related protein RAB 88.1 0.32 1.1E-05 44.1 3.7 24 409-432 5-28 (168)
378 4gzl_A RAS-related C3 botulinu 88.1 0.28 9.5E-06 46.8 3.4 23 409-431 30-52 (204)
379 2www_A Methylmalonic aciduria 88.1 0.45 1.5E-05 49.8 5.2 29 408-436 73-101 (349)
380 2wjg_A FEOB, ferrous iron tran 88.0 0.3 1E-05 45.5 3.6 23 409-431 7-29 (188)
381 1bif_A 6-phosphofructo-2-kinas 88.0 0.4 1.4E-05 52.4 5.0 29 409-437 39-67 (469)
382 3f9v_A Minichromosome maintena 87.9 0.15 5.2E-06 57.5 1.5 48 386-433 295-351 (595)
383 1fzq_A ADP-ribosylation factor 87.8 0.33 1.1E-05 45.1 3.7 24 408-431 15-38 (181)
384 2ged_A SR-beta, signal recogni 87.7 0.3 1E-05 45.8 3.3 24 409-432 48-71 (193)
385 3sop_A Neuronal-specific septi 87.7 0.26 8.9E-06 49.6 3.0 23 411-433 4-26 (270)
386 2pjz_A Hypothetical protein ST 87.6 0.23 7.8E-06 49.7 2.5 24 410-433 31-54 (263)
387 3def_A T7I23.11 protein; chlor 87.6 0.53 1.8E-05 46.9 5.3 36 397-432 24-59 (262)
388 3nh6_A ATP-binding cassette SU 87.6 0.21 7.3E-06 51.1 2.3 23 409-431 80-102 (306)
389 3fvq_A Fe(3+) IONS import ATP- 87.6 0.26 8.9E-06 51.5 3.0 23 409-431 30-52 (359)
390 3thx_A DNA mismatch repair pro 87.6 0.94 3.2E-05 53.6 8.0 23 408-430 661-683 (934)
391 3bfv_A CAPA1, CAPB2, membrane 87.5 0.75 2.6E-05 46.1 6.3 51 394-444 65-118 (271)
392 2vp4_A Deoxynucleoside kinase; 87.5 0.22 7.4E-06 48.7 2.2 25 408-432 19-43 (230)
393 3con_A GTPase NRAS; structural 87.5 0.28 9.7E-06 45.8 3.0 23 410-432 22-44 (190)
394 2nzj_A GTP-binding protein REM 87.4 0.37 1.3E-05 44.1 3.7 23 409-431 4-26 (175)
395 1kao_A RAP2A; GTP-binding prot 87.1 0.31 1.1E-05 44.0 3.0 22 411-432 5-26 (167)
396 3hdt_A Putative kinase; struct 87.1 0.36 1.2E-05 46.9 3.5 26 409-434 14-39 (223)
397 2woj_A ATPase GET3; tail-ancho 87.1 0.74 2.5E-05 48.2 6.1 36 409-444 18-55 (354)
398 2woo_A ATPase GET3; tail-ancho 87.1 0.7 2.4E-05 47.8 5.9 36 409-444 19-54 (329)
399 1x6v_B Bifunctional 3'-phospho 87.0 0.39 1.3E-05 54.1 4.1 27 408-434 51-77 (630)
400 1p9r_A General secretion pathw 87.0 0.83 2.8E-05 48.9 6.6 81 409-501 167-248 (418)
401 1byi_A Dethiobiotin synthase; 87.0 0.52 1.8E-05 45.5 4.7 34 410-443 2-36 (224)
402 1p5z_B DCK, deoxycytidine kina 87.0 0.15 5.1E-06 51.0 0.7 26 408-433 23-48 (263)
403 1h65_A Chloroplast outer envel 87.0 0.61 2.1E-05 46.7 5.3 36 397-432 27-62 (270)
404 1r8s_A ADP-ribosylation factor 86.9 0.34 1.2E-05 43.8 3.1 21 412-432 3-23 (164)
405 3q85_A GTP-binding protein REM 86.9 0.31 1E-05 44.4 2.8 20 411-430 4-23 (169)
406 1z47_A CYSA, putative ABC-tran 86.9 0.3 1E-05 51.0 3.0 22 410-431 42-63 (355)
407 1lw7_A Transcriptional regulat 86.9 0.32 1.1E-05 51.2 3.3 26 409-434 170-195 (365)
408 1z08_A RAS-related protein RAB 86.9 0.32 1.1E-05 44.2 2.9 24 409-432 6-29 (170)
409 1c1y_A RAS-related protein RAP 86.9 0.33 1.1E-05 44.0 3.0 22 411-432 5-26 (167)
410 1ek0_A Protein (GTP-binding pr 86.8 0.33 1.1E-05 44.1 3.0 22 411-432 5-26 (170)
411 1m7b_A RND3/RHOE small GTP-bin 86.8 0.32 1.1E-05 45.3 2.9 24 409-432 7-30 (184)
412 2gj8_A MNME, tRNA modification 86.8 0.31 1.1E-05 45.0 2.7 23 410-432 5-27 (172)
413 2bbs_A Cystic fibrosis transme 86.8 0.27 9.2E-06 50.0 2.5 24 409-432 64-87 (290)
414 3d31_A Sulfate/molybdate ABC t 86.8 0.3 1E-05 51.0 2.9 23 409-431 26-48 (348)
415 1u8z_A RAS-related protein RAL 86.7 0.47 1.6E-05 42.8 4.0 23 410-432 5-27 (168)
416 3rlf_A Maltose/maltodextrin im 86.7 0.32 1.1E-05 51.3 3.0 23 409-431 29-51 (381)
417 2erx_A GTP-binding protein DI- 86.7 0.32 1.1E-05 44.3 2.8 22 410-431 4-25 (172)
418 1z0j_A RAB-22, RAS-related pro 86.7 0.34 1.2E-05 44.0 3.0 23 410-432 7-29 (170)
419 3ch4_B Pmkase, phosphomevalona 86.6 0.5 1.7E-05 44.9 4.1 26 408-433 10-35 (202)
420 3q72_A GTP-binding protein RAD 86.6 0.3 1E-05 44.3 2.6 20 411-430 4-23 (166)
421 3tui_C Methionine import ATP-b 86.6 0.33 1.1E-05 50.9 3.0 50 481-530 173-229 (366)
422 2yyz_A Sugar ABC transporter, 86.6 0.33 1.1E-05 50.9 3.0 23 409-431 29-51 (359)
423 3ez2_A Plasmid partition prote 86.5 1.1 3.9E-05 47.6 7.4 28 407-434 106-134 (398)
424 2lkc_A Translation initiation 86.5 0.37 1.3E-05 44.3 3.1 23 409-431 8-30 (178)
425 1nrj_B SR-beta, signal recogni 86.5 0.37 1.3E-05 46.2 3.3 24 409-432 12-35 (218)
426 3ihw_A Centg3; RAS, centaurin, 86.4 0.35 1.2E-05 45.2 2.9 24 409-432 20-43 (184)
427 2it1_A 362AA long hypothetical 86.4 0.34 1.1E-05 50.9 3.0 23 409-431 29-51 (362)
428 1g16_A RAS-related protein SEC 86.4 0.35 1.2E-05 43.9 2.9 22 410-431 4-25 (170)
429 1wms_A RAB-9, RAB9, RAS-relate 86.4 0.36 1.2E-05 44.3 3.0 24 409-432 7-30 (177)
430 1oxx_K GLCV, glucose, ABC tran 86.3 0.28 9.7E-06 51.3 2.4 23 409-431 31-53 (353)
431 2yv5_A YJEQ protein; hydrolase 86.3 0.42 1.4E-05 48.9 3.7 31 395-430 156-186 (302)
432 1r2q_A RAS-related protein RAB 86.2 0.37 1.3E-05 43.7 3.0 23 410-432 7-29 (170)
433 1g29_1 MALK, maltose transport 86.2 0.35 1.2E-05 51.0 3.0 22 410-431 30-51 (372)
434 2iwr_A Centaurin gamma 1; ANK 86.1 0.33 1.1E-05 44.8 2.5 23 410-432 8-30 (178)
435 1v43_A Sugar-binding transport 86.1 0.35 1.2E-05 50.9 3.0 23 409-431 37-59 (372)
436 1ky3_A GTP-binding protein YPT 86.0 0.49 1.7E-05 43.5 3.7 24 409-432 8-31 (182)
437 3c5c_A RAS-like protein 12; GD 86.0 0.38 1.3E-05 45.0 3.0 24 409-432 21-44 (187)
438 3igf_A ALL4481 protein; two-do 85.9 0.64 2.2E-05 48.9 4.9 35 410-444 3-37 (374)
439 2fn4_A P23, RAS-related protei 85.9 0.51 1.7E-05 43.3 3.8 24 409-432 9-32 (181)
440 1m2o_B GTP-binding protein SAR 85.9 0.38 1.3E-05 45.2 2.9 23 410-432 24-46 (190)
441 1wcv_1 SOJ, segregation protei 85.8 0.52 1.8E-05 46.8 4.0 36 409-444 6-42 (257)
442 1z0f_A RAB14, member RAS oncog 85.8 0.4 1.4E-05 44.0 3.0 24 409-432 15-38 (179)
443 1svi_A GTP-binding protein YSX 85.7 0.4 1.4E-05 44.9 3.0 23 409-431 23-45 (195)
444 1ihu_A Arsenical pump-driving 85.7 0.7 2.4E-05 52.1 5.5 37 408-444 7-43 (589)
445 2cxx_A Probable GTP-binding pr 85.6 0.37 1.3E-05 44.8 2.7 21 411-431 3-23 (190)
446 3bc1_A RAS-related protein RAB 85.6 0.41 1.4E-05 44.6 3.0 24 409-432 11-34 (195)
447 3tw8_B RAS-related protein RAB 85.6 0.45 1.6E-05 43.7 3.3 24 408-431 8-31 (181)
448 1g3q_A MIND ATPase, cell divis 85.6 0.73 2.5E-05 44.8 4.9 35 410-444 3-38 (237)
449 3kkq_A RAS-related protein M-R 85.5 0.42 1.4E-05 44.3 3.0 24 409-432 18-41 (183)
450 3q9l_A Septum site-determining 85.5 0.73 2.5E-05 45.5 4.9 35 410-444 3-38 (260)
451 2hxs_A RAB-26, RAS-related pro 85.4 0.4 1.4E-05 44.0 2.8 23 409-431 6-28 (178)
452 2r9v_A ATP synthase subunit al 85.4 0.9 3.1E-05 49.3 5.8 51 410-464 176-227 (515)
453 2y8e_A RAB-protein 6, GH09086P 85.4 0.42 1.4E-05 43.8 2.9 22 410-431 15-36 (179)
454 4dsu_A GTPase KRAS, isoform 2B 85.3 0.43 1.5E-05 44.3 3.0 23 410-432 5-27 (189)
455 2cjw_A GTP-binding protein GEM 85.3 0.4 1.4E-05 45.1 2.8 22 410-431 7-28 (192)
456 2bme_A RAB4A, RAS-related prot 85.3 0.42 1.4E-05 44.3 2.9 24 409-432 10-33 (186)
457 2oil_A CATX-8, RAS-related pro 85.3 0.43 1.5E-05 44.7 3.0 24 409-432 25-48 (193)
458 3la6_A Tyrosine-protein kinase 85.3 1.2 3.9E-05 45.2 6.3 52 393-444 74-128 (286)
459 1upt_A ARL1, ADP-ribosylation 85.2 0.56 1.9E-05 42.6 3.7 24 409-432 7-30 (171)
460 1mh1_A RAC1; GTP-binding, GTPa 85.2 0.44 1.5E-05 44.1 3.0 22 410-431 6-27 (186)
461 3t1o_A Gliding protein MGLA; G 85.1 0.39 1.3E-05 44.9 2.6 26 409-434 14-39 (198)
462 2a9k_A RAS-related protein RAL 85.1 0.45 1.5E-05 44.0 3.0 24 409-432 18-41 (187)
463 3cbq_A GTP-binding protein REM 85.1 0.34 1.2E-05 45.8 2.1 22 409-430 23-44 (195)
464 3bwd_D RAC-like GTP-binding pr 85.1 0.45 1.5E-05 43.9 3.0 22 410-431 9-30 (182)
465 3gd7_A Fusion complex of cysti 85.0 0.42 1.4E-05 50.7 3.0 23 409-431 47-69 (390)
466 2efe_B Small GTP-binding prote 85.0 0.46 1.6E-05 43.8 2.9 24 409-432 12-35 (181)
467 3t5g_A GTP-binding protein RHE 85.0 0.45 1.5E-05 43.9 2.9 23 409-431 6-28 (181)
468 3thx_B DNA mismatch repair pro 85.0 1.4 4.6E-05 52.1 7.5 23 408-430 672-694 (918)
469 2atv_A RERG, RAS-like estrogen 84.9 0.45 1.6E-05 44.7 3.0 24 409-432 28-51 (196)
470 3dz8_A RAS-related protein RAB 84.9 0.48 1.6E-05 44.4 3.1 23 410-432 24-46 (191)
471 1f6b_A SAR1; gtpases, N-termin 84.9 0.38 1.3E-05 45.6 2.3 22 410-431 26-47 (198)
472 1c9k_A COBU, adenosylcobinamid 84.9 0.4 1.4E-05 44.8 2.4 21 412-432 2-22 (180)
473 4b3f_X DNA-binding protein smu 84.8 1.2 4.2E-05 50.7 7.0 37 393-433 193-229 (646)
474 3cwq_A Para family chromosome 84.8 1.1 3.8E-05 42.8 5.8 33 411-444 2-35 (209)
475 3pqc_A Probable GTP-binding pr 84.8 0.43 1.5E-05 44.5 2.7 24 409-432 23-46 (195)
476 2g6b_A RAS-related protein RAB 84.8 0.48 1.6E-05 43.6 3.0 24 409-432 10-33 (180)
477 1f2t_A RAD50 ABC-ATPase; DNA d 84.8 0.55 1.9E-05 42.4 3.3 25 409-433 23-47 (149)
478 1tf7_A KAIC; homohexamer, hexa 84.8 0.71 2.4E-05 51.2 4.9 36 409-444 281-316 (525)
479 3clv_A RAB5 protein, putative; 84.6 0.48 1.6E-05 44.5 3.0 23 410-432 8-30 (208)
480 3k9g_A PF-32 protein; ssgcid, 84.6 0.82 2.8E-05 45.5 4.8 36 408-444 26-62 (267)
481 2ew1_A RAS-related protein RAB 84.6 0.48 1.6E-05 45.1 2.9 24 409-432 26-49 (201)
482 1gwn_A RHO-related GTP-binding 84.6 0.47 1.6E-05 45.2 2.9 24 409-432 28-51 (205)
483 3vr4_D V-type sodium ATPase su 84.5 0.99 3.4E-05 48.4 5.5 25 411-435 153-177 (465)
484 2bov_A RAla, RAS-related prote 84.5 0.49 1.7E-05 44.7 3.0 24 409-432 14-37 (206)
485 2gza_A Type IV secretion syste 84.5 0.39 1.3E-05 50.5 2.4 34 410-444 176-209 (361)
486 1pui_A ENGB, probable GTP-bind 84.5 0.32 1.1E-05 46.4 1.6 22 409-430 26-47 (210)
487 2fg5_A RAB-22B, RAS-related pr 84.4 0.49 1.7E-05 44.4 2.9 24 409-432 23-46 (192)
488 3tmk_A Thymidylate kinase; pho 84.4 0.6 2E-05 45.1 3.5 27 409-435 5-31 (216)
489 3oes_A GTPase rhebl1; small GT 84.3 0.49 1.7E-05 44.7 2.9 24 409-432 24-47 (201)
490 1zd9_A ADP-ribosylation factor 84.3 0.51 1.7E-05 44.1 3.0 23 410-432 23-45 (188)
491 4i1u_A Dephospho-COA kinase; s 84.3 0.51 1.7E-05 45.3 2.9 23 409-431 9-31 (210)
492 2o8b_B DNA mismatch repair pro 84.3 0.78 2.7E-05 54.9 5.1 22 409-430 789-810 (1022)
493 1ega_A Protein (GTP-binding pr 84.2 0.57 1.9E-05 47.9 3.4 24 409-432 8-31 (301)
494 2fh5_B SR-beta, signal recogni 84.1 0.51 1.8E-05 45.1 3.0 24 409-432 7-30 (214)
495 2gf9_A RAS-related protein RAB 84.1 0.52 1.8E-05 44.0 3.0 24 409-432 22-45 (189)
496 3reg_A RHO-like small GTPase; 84.1 0.53 1.8E-05 44.2 3.0 24 409-432 23-46 (194)
497 1vg8_A RAS-related protein RAB 84.0 0.67 2.3E-05 43.8 3.7 24 409-432 8-31 (207)
498 2a5j_A RAS-related protein RAB 84.0 0.53 1.8E-05 44.0 3.0 23 409-431 21-43 (191)
499 2g3y_A GTP-binding protein GEM 83.9 0.5 1.7E-05 45.4 2.8 22 409-430 37-58 (211)
500 2qnr_A Septin-2, protein NEDD5 83.9 0.44 1.5E-05 48.7 2.5 21 411-431 20-40 (301)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-52 Score=399.78 Aligned_cols=178 Identities=34% Similarity=0.602 Sum_probs=159.4
Q ss_pred CCCCCCCCCCCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCcc
Q 004772 5 SSLSSSFTAKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYA 84 (731)
Q Consensus 5 ~~~~~~~~~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~ 84 (731)
|+++|+..+.++|||||||||+|+|++|++||+++|+++||++|+|++ ++++|+.|.++|.+||++|+++|||||+||+
T Consensus 24 s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~-el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa 102 (204)
T 3ozi_A 24 STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDD-ELLKGKEIGPNLLRAIDQSKIYVPIISSGYA 102 (204)
T ss_dssp ----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEET-TTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred CCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCC-ccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence 344555667899999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHhhhh-cCCeeEeEEeecCccccccccCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhcccccccCC
Q 004772 85 YSTWCLDELVRILDCKKR-NGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQASNISGFYASR 163 (731)
Q Consensus 85 ~S~wc~~El~~~~~~~~~-~~~~v~Pify~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 163 (731)
+|.||++||++|++|+++ ++++||||||+|+|++||+|+|+||++|.+|+.++. ++++++||.||++|++++||++.
T Consensus 103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~-~~~v~~Wr~AL~~va~lsG~~~~- 180 (204)
T 3ozi_A 103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD-GQTIQNWKDALKKVGDLKGWHIG- 180 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC-HHHHHHHHHHHHHHHTSCBEEEC-
T ss_pred cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC-HHHHHHHHHHHHHHhccCceecC-
Confidence 999999999999999875 679999999999999999999999999999998874 46899999999999999999765
Q ss_pred CCCCHHHHHHHHHHhhhhhhcc
Q 004772 164 SFRNDAELVEKIAEDISKKLKD 185 (731)
Q Consensus 164 ~~~~~~~~i~~iv~~v~~~l~~ 185 (731)
++.+|+++|++||++|+++|+.
T Consensus 181 ~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 181 KNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999975
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=7.5e-52 Score=388.66 Aligned_cols=169 Identities=43% Similarity=0.682 Sum_probs=145.1
Q ss_pred CCCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccHHH
Q 004772 13 AKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCLDE 92 (731)
Q Consensus 13 ~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~~E 92 (731)
.+++|||||||||+|+|++|++||+++|.++||++|+|++ ++++|+.|.++|.+||++|+++|||||+||++|.||++|
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~-~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDK-ELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC---------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcc-cccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 3689999999999999999999999999999999999986 899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCeeEeEEeecCccccccccCcHHHHHHhhhhcCCChhHHHHHHHHHHHhhcccccccCCCCCCHHHHH
Q 004772 93 LVRILDCKKRNGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQASNISGFYASRSFRNDAELV 172 (731)
Q Consensus 93 l~~~~~~~~~~~~~v~Pify~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~~~~~~i 172 (731)
|++|++|.++++++||||||+|+|++||+|+|+||++|.+|+.+ .+.+++++||.||++|++++||+. +++|+++|
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~-~~~~~~~~Wr~AL~~va~~~G~~~---~~~e~~~i 159 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR-EDPEKVLKWRQALTNFAQLSGDCS---GDDDSKLV 159 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSCCEEC---CSCHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc-cCHHHHHHHHHHHHHHhcccceec---CCCHHHHH
Confidence 99999999999999999999999999999999999999999988 456789999999999999999976 36799999
Q ss_pred HHHHHhhhhhhccC
Q 004772 173 EKIAEDISKKLKDM 186 (731)
Q Consensus 173 ~~iv~~v~~~l~~~ 186 (731)
++||++|+++|+..
T Consensus 160 ~~Iv~~v~~~l~~~ 173 (176)
T 3jrn_A 160 DKIANEISNKKTIY 173 (176)
T ss_dssp HHHHHHHHTTCC--
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999754
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=7.6e-41 Score=318.43 Aligned_cols=177 Identities=35% Similarity=0.631 Sum_probs=157.0
Q ss_pred ccCCCCCCcceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCC
Q 004772 201 CLSSSFTAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYAS 280 (731)
Q Consensus 201 ~~~~~~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~ 280 (731)
+.+|++.+.++|||||||+|+|++++|+.||+.+|+++||++|+|+.+ +.+|+.|.++|.+||++|+++|+|||++|+.
T Consensus 25 ~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~e-l~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~ 103 (204)
T 3ozi_A 25 TNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDE-LLKGKEIGPNLLRAIDQSKIYVPIISSGYAD 103 (204)
T ss_dssp ---------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETT-TCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred CCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCc-cCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence 445566778999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCCEEEEEEEeecCCcccccccchHHhhhhhhhcch-HHHHHHHHHHhhccccCCceecCCC
Q 004772 281 SKWCLDELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQKGSFRKAFVHHERNFP-DKVQKWREALTKASSISEFFVVDPR 359 (731)
Q Consensus 281 S~~c~~El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~~~g~~~~~~~~~~~~~~-~~i~~~~~al~~~~~~~g~~~~~~~ 359 (731)
|.||++||.++++|.....+++|+||||+|+|++||+|+|.||++|.+|..++. +++++|+.||+++++++||+.....
T Consensus 104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCC
Confidence 999999999999997334689999999999999999999999999999988875 6899999999999999999666666
Q ss_pred CcchhhhHHhhhhhccccc
Q 004772 360 NEAGDVEKIAQDISKKVED 378 (731)
Q Consensus 360 ~~~~~~~~i~~~v~~~l~~ 378 (731)
.+...+++|+.++..+++.
T Consensus 184 ~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 184 KQGAIADKVSADIWSHISK 202 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 6778899999999988764
No 4
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-40 Score=313.20 Aligned_cols=168 Identities=39% Similarity=0.638 Sum_probs=142.6
Q ss_pred CCcceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhHH
Q 004772 207 TAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCLD 286 (731)
Q Consensus 207 ~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~ 286 (731)
+..++|||||||+|+|++.+|++||+.+|+++||++|+|+++ +.+|+.+.++|.+||++|+++|+|||++|++|.||++
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~-l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKE-LENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC---------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEccc-ccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 346899999999999999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEEEeecCCcccccccchHHhhhhhhhcc-hHHHHHHHHHHhhccccCCceecCCCCcchhh
Q 004772 287 ELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQKGSFRKAFVHHERNF-PDKVQKWREALTKASSISEFFVVDPRNEAGDV 365 (731)
Q Consensus 287 El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~~~g~~~~~~~~~~~~~-~~~i~~~~~al~~~~~~~g~~~~~~~~~~~~~ 365 (731)
||.++++|. +..+++|+||||+|+|++||+|+|.||++|.+|..+. .+++++|+.||+++++++||+. ..++++.+
T Consensus 83 EL~~i~~~~-~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~--~~~e~~~i 159 (176)
T 3jrn_A 83 ELVTIMDFE-KKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCS--GDDDSKLV 159 (176)
T ss_dssp HHHHHHHHH-HTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEEC--CSCHHHHH
T ss_pred HHHHHHhhh-ccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceec--CCCHHHHH
Confidence 999999998 8888999999999999999999999999999998773 4789999999999999999954 46799999
Q ss_pred hHHhhhhhccccc
Q 004772 366 EKIAQDISKKVED 378 (731)
Q Consensus 366 ~~i~~~v~~~l~~ 378 (731)
++|++++..++++
T Consensus 160 ~~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 160 DKIANEISNKKTI 172 (176)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999876
No 5
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-38 Score=362.30 Aligned_cols=297 Identities=14% Similarity=0.152 Sum_probs=222.9
Q ss_pred ccchhhHHHHHHhhhhc-CCCeEEEEEEccCCchhhHHHHHHHH----HhcccCcceEEEeecccccccccHHHHHHHHH
Q 004772 389 VGLNSRIEKIKSLLCLE-LGDVRIVGIWGMGGIGKTTIASVIFH----QISGDFQGKCFMKNVGEESSKMGVIHVRDEVI 463 (731)
Q Consensus 389 vGR~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 463 (731)
+||+.++++|.++|..+ .+..++|+|+||||+||||||+++|+ +++.+|+.++|+. +..... .+...++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999765 34589999999999999999999996 6888999999996 222211 46778888888
Q ss_pred HhhhcCCc--ccCC-CC-----cHHHHHHHHcCC-CcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhhhhhcC-C
Q 004772 464 SQVMGENI--KIGT-PT-----ITPNIKKRLQQR-KVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRLLYKRG-V 533 (731)
Q Consensus 464 ~~l~~~~~--~~~~-~~-----~~~~l~~~L~~k-~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~-~ 533 (731)
..++.... .... .. +...+++.|.++ ++||||||||+.... .++ ..+||+||||||+..++..++ .
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~---~~~-~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI---RWA-QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH---HHH-HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh---ccc-ccCCCEEEEEcCCHHHHHHcCCC
Confidence 88765421 1111 11 367889999996 999999999997643 111 127999999999999988765 4
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHH-hcCCCCcc
Q 004772 534 QSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHK-LKLITDPN 612 (731)
Q Consensus 534 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~-l~~~~~~~ 612 (731)
..+|+|++|+.+||++||.++++.... .+...+++.+|+++|+|+||||+.+|+.|+.+.. +|...+.. +......+
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVG 362 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSST
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHH
Confidence 468999999999999999999876532 3567789999999999999999999999987742 33333332 11112344
Q ss_pred HHHHHHHcHhCCCHHHHHHHH-----------HcccccCCcChhHHHhhhcC--------------cchHHHHHHHHHHC
Q 004772 613 IYKVLKISYDGLNWEEKEIFL-----------DVACFFKGEDVDFVTRVQDD--------------PTSMRNGLNILVEK 667 (731)
Q Consensus 613 i~~~l~~s~~~L~~~~k~~fl-----------~la~f~~~~~~~~l~~~~~~--------------~~~~~~~l~~L~~~ 667 (731)
+..+|..||+.||+..+.||+ +||+||+++.++. .+|.+ ..++.+.++.|+++
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i--~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~r 440 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPV--KLWSCVIPVDICSNEEEQLDDEVADRLKRLSKR 440 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEH--HHHHHHSCC-------CCCTHHHHHHHHHTTTB
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeee--eeeeeeccceeccCCCCCCHHHHHHHHHHHHHc
Confidence 555666666666666666666 9999999988772 12211 11445589999999
Q ss_pred cCceee----CCeEEehHHHHHHHHHHHhhcC
Q 004772 668 SLITIS----DNRLQMHDMLQEIGKTIIRQES 695 (731)
Q Consensus 668 sLi~~~----~~~~~mHdlvr~~a~~~~~~e~ 695 (731)
||++.. ..+|.|||+||+||++++.+++
T Consensus 441 sLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 441 GALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999976 2379999999999998776654
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.1e-35 Score=365.20 Aligned_cols=305 Identities=22% Similarity=0.299 Sum_probs=234.2
Q ss_pred CCCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH---hcccCcceEEEeecccccccccHH
Q 004772 380 SDSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ---ISGDFQGKCFMKNVGEESSKMGVI 456 (731)
Q Consensus 380 ~~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 456 (731)
.+|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++ ...+|...+|+..+.... .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 46667788999999999999999766667899999999999999999999975 356676655444333321 22334
Q ss_pred HHHHHHHHhhhcCCcccCC-----CCcHHHHHHHHcCC--CcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhhhh
Q 004772 457 HVRDEVISQVMGENIKIGT-----PTITPNIKKRLQQR--KVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRLLY 529 (731)
Q Consensus 457 ~l~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L~~k--~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~ 529 (731)
..+..++..+......... ..+...++..+.++ |+||||||+|+... +..+++|++||||||+..++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~-----~~~~~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV-----LKAFDNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----HTTTCSSCEEEEEESSTTTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----HHhhcCCCEEEEEcCCHHHHH
Confidence 4455555554433221111 11455666677666 99999999998642 233478999999999998875
Q ss_pred h-cCCceEEEcCC-CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 004772 530 K-RGVQSVCEVKG-LKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHKLKL 607 (731)
Q Consensus 530 ~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~ 607 (731)
. .+....+++++ |+.+||++||...++.. .+...+.+.+|+++|+|+||||+++|++|+.++ ..|...++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 4 45667889996 99999999999888432 233456789999999999999999999998766 468888777644
Q ss_pred CCC-----------ccHHHHHHHcHhCCCHHHHHHHHHcccccCCcCh--hHHHhhhcCcc-hHHHHHHHHHHCcCceee
Q 004772 608 ITD-----------PNIYKVLKISYDGLNWEEKEIFLDVACFFKGEDV--DFVTRVQDDPT-SMRNGLNILVEKSLITIS 673 (731)
Q Consensus 608 ~~~-----------~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~~~~--~~l~~~~~~~~-~~~~~l~~L~~~sLi~~~ 673 (731)
... ..+..+|..||+.|++++|.||++||+||++..+ +.+..+|..++ .++..++.|+++|||+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 321 3489999999999999999999999999988654 46777777655 789999999999999987
Q ss_pred -CC---eEEehHHHHHHHHHHHhhc
Q 004772 674 -DN---RLQMHDMLQEIGKTIIRQE 694 (731)
Q Consensus 674 -~~---~~~mHdlvr~~a~~~~~~e 694 (731)
++ +|+||+|||+|+++.+.++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 44 4999999999999986654
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=329.77 Aligned_cols=328 Identities=20% Similarity=0.272 Sum_probs=236.1
Q ss_pred CCCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh---cccCc-ceEEEeecccccccccH
Q 004772 380 SDSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI---SGDFQ-GKCFMKNVGEESSKMGV 455 (731)
Q Consensus 380 ~~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 455 (731)
..|..+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ..+|+ .++|+.. .... ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESCC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC-CCCc-hHHH
Confidence 456677889999999999999997655568999999999999999999999643 67885 5667653 2221 1122
Q ss_pred HHHHHHHHHhhhcCCc--ccCCC---CcHHHHHHHHcC--CCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhhh
Q 004772 456 IHVRDEVISQVMGENI--KIGTP---TITPNIKKRLQQ--RKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRLL 528 (731)
Q Consensus 456 ~~l~~~ll~~l~~~~~--~~~~~---~~~~~l~~~L~~--k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~ 528 (731)
...+..+...++.... ..... .....+...+.+ +++||||||+|+... +.+++++++||||||+..++
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~-----l~~l~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV-----LKAFDSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHH-----HHTTCSSCEEEEEESCGGGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHH-----HHHhcCCCeEEEECCCcHHH
Confidence 2223333333332111 11111 145566677765 799999999987542 23457899999999999877
Q ss_pred hhcCCceEEEc---CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHh
Q 004772 529 YKRGVQSVCEV---KGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLHKL 605 (731)
Q Consensus 529 ~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l 605 (731)
.... ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||.++|+.++... ..|...++.+
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l 345 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQL 345 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 6543 234444 6899999999999988531 222345788999999999999999999998764 3687777766
Q ss_pred cCCC-----------CccHHHHHHHcHhCCCHHHHHHHHHcccccCCcCh--hHHHhhhcCcc-hHHHHHHHHHHCcCce
Q 004772 606 KLIT-----------DPNIYKVLKISYDGLNWEEKEIFLDVACFFKGEDV--DFVTRVQDDPT-SMRNGLNILVEKSLIT 671 (731)
Q Consensus 606 ~~~~-----------~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~~~~--~~l~~~~~~~~-~~~~~l~~L~~~sLi~ 671 (731)
.... ...+..+|..||+.|+++.+.||+++||||.+..+ +.+..+|.... .+...++.|+++|||.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLF 425 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSE
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeE
Confidence 5332 23689999999999999999999999999886544 56777776654 7889999999999998
Q ss_pred ee--C--CeEEehHHHHHHHHHHHhhc-------------------CCCCCCCcccccCcccHHHHHhcCC
Q 004772 672 IS--D--NRLQMHDMLQEIGKTIIRQE-------------------SFKEPGKRSKLWDHKDVYQVLKKNK 719 (731)
Q Consensus 672 ~~--~--~~~~mHdlvr~~a~~~~~~e-------------------~~~~~~~r~rl~~~~~i~~~l~~~~ 719 (731)
.. + .+|.||+++|+++++.+..+ -+..+..+.++|.++.++.++..+.
T Consensus 426 ~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~ 496 (591)
T 1z6t_A 426 CDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKM 496 (591)
T ss_dssp EEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred EecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCC
Confidence 75 2 27999999999999872210 0122345556666666776666554
No 8
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-33 Score=325.20 Aligned_cols=296 Identities=17% Similarity=0.195 Sum_probs=212.3
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHH--HhcccCcc-eEEEeecccccccccHHHHHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFH--QISGDFQG-KCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+. ++|+. ++ .......++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs---~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC---CSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC---CCCCHHHHHHHH
Confidence 34599999999999999753 3478999999999999999999996 47888987 56665 33 333344444444
Q ss_pred HHhhhcCC---cc-cCC--------CCcHHHHHHHH---cCCCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhh
Q 004772 463 ISQVMGEN---IK-IGT--------PTITPNIKKRL---QQRKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRL 527 (731)
Q Consensus 463 l~~l~~~~---~~-~~~--------~~~~~~l~~~L---~~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 527 (731)
+..+.... .. .+. ..+...++..| .++++||||||||+... +.. +++||+||||||+..+
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eq-Le~----f~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNA----FNLSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHH-HHH----HHSSCCEEEECSCSHH
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHH-HHh----hCCCeEEEEeccChHH
Confidence 44322111 00 000 11344566655 57999999999999542 222 2479999999999988
Q ss_pred hhhcCCceEEEcC------CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcCC--CHHHHH
Q 004772 528 LYKRGVQSVCEVK------GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK--SKEQWK 599 (731)
Q Consensus 528 ~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~--~~~~w~ 599 (731)
+..+.....+.|+ +|+.+||++||.+.. +.. ..++..+ .|+|+||||+++|+.|+.+ +.++|.
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 7543322345555 899999999999984 221 1223333 3999999999999999876 677886
Q ss_pred HHHHHhcCCCCccHHHHHHHcHhCCCHHH-HHHHHHcccccCCcChh--HHHhhhcCcc--hHHHHHHHHHHCcCceee-
Q 004772 600 DKLHKLKLITDPNIYKVLKISYDGLNWEE-KEIFLDVACFFKGEDVD--FVTRVQDDPT--SMRNGLNILVEKSLITIS- 673 (731)
Q Consensus 600 ~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-k~~fl~la~f~~~~~~~--~l~~~~~~~~--~~~~~l~~L~~~sLi~~~- 673 (731)
.. ....+..+|..||+.|++++ |.||++||+||.+..++ .+..+|...+ .++..++.|+++||++..
T Consensus 349 ~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~ 421 (1221)
T 1vt4_I 349 HV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421 (1221)
T ss_dssp HC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCS
T ss_pred cC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeC
Confidence 53 34679999999999999999 99999999999876654 5777887663 688999999999999986
Q ss_pred -CCeEEehHHHHHHHHHHHhhcCCCCCCCcccccCcccHH
Q 004772 674 -DNRLQMHDMLQEIGKTIIRQESFKEPGKRSKLWDHKDVY 712 (731)
Q Consensus 674 -~~~~~mHdlvr~~a~~~~~~e~~~~~~~r~rl~~~~~i~ 712 (731)
.++|+||||+++++. . .. ..+..++|+.++-.+.
T Consensus 422 ~~~rYrMHDLllELr~-~--~~--e~~alHrRLvd~Y~~~ 456 (1221)
T 1vt4_I 422 KESTISIPSIYLELKV-K--LE--NEYALHRSIVDHYNIP 456 (1221)
T ss_dssp SSSEEBCCCHHHHHHH-H--HS--CCTTHHHHHHHHHHHH
T ss_pred CCCEEEehHHHHHHhc-C--CC--cHHHHHHHHHHHHHhh
Confidence 468999999988431 1 11 2344555555443333
No 9
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=2.2e-32 Score=256.45 Aligned_cols=136 Identities=22% Similarity=0.361 Sum_probs=119.7
Q ss_pred CCCCCceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccH
Q 004772 11 FTAKSKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCL 90 (731)
Q Consensus 11 ~~~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~ 90 (731)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ ++.+|+.|.++|.++|++|+++|+|+|+||++|.||+
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~-~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~ 92 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDF-SLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQ 92 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGG-EECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHH-hCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHH
Confidence 45679999999999999 668999999999999999999985 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCeeEeEEeecCccccccccCcHHHHHHhhhhcCCChhHHHHHHHHHHH
Q 004772 91 DELVRILDCKKRNGQTVVPVFYKVSPPAVRKQRLSFGEAFVHHESNFSDKVQVQKWRDSLTQ 152 (731)
Q Consensus 91 ~El~~~~~~~~~~~~~v~Pify~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~ 152 (731)
+||..+++|...+++.||||||+|+|++||+|+|.||++|.......+ +.++-+.|.+
T Consensus 93 ~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~----~~~ia~~l~~ 150 (154)
T 3h16_A 93 KELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKS----VDEIVADLMA 150 (154)
T ss_dssp HHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSC----HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCccc----HHHHHHHHHH
Confidence 999999999888888999999999999999999999998877654432 4445444443
No 10
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=7.2e-28 Score=225.68 Aligned_cols=123 Identities=19% Similarity=0.347 Sum_probs=112.5
Q ss_pred CCCcceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhH
Q 004772 206 FTAKCKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCL 285 (731)
Q Consensus 206 ~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~ 285 (731)
..+.++|||||||++.| +..|+.+|+.+|+++|++||+|+++ +.+|+.|.++|.+||++|+++|+|+|++|+.|.||+
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~-l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~ 92 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFS-LRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQ 92 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGE-ECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHh-CCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHH
Confidence 45678999999999999 5579999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEEeecCCcccccccchHHhhhhhhh
Q 004772 286 DELVKILDCLIKNTGQIVVPVFYRIDSSDVHKQKGSFRKAFVHHER 331 (731)
Q Consensus 286 ~El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~~~g~~~~~~~~~~~ 331 (731)
.||..++.|. ...+++|+||||+|+|++|++|.|.|++.+.....
T Consensus 93 ~El~~~~~~~-~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 93 KELDGLFQLE-SSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHHHHTCCC-TTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHHHH-hcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 9999999886 66778899999999999999999999998876543
No 11
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=4e-25 Score=203.70 Aligned_cols=107 Identities=17% Similarity=0.328 Sum_probs=80.6
Q ss_pred CCCCCCceeEEEeeecccCCCChHHHHHHHHHh--CCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCcc
Q 004772 10 SFTAKSKYDVFLSFLGKDTGIGIRDHLAAALRR--KQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYST 87 (731)
Q Consensus 10 ~~~~~~~~dvFis~~~~d~~~~f~~~L~~~l~~--~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~ 87 (731)
|......|||||||+++|+ .|+.+|+.+|++ .|+++|+|++ ++.+|+.+.++|.++|++|+++|+|+|+||++|.
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~r-D~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLR-DATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC-------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECc-cccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 3446789999999999998 589999999998 6999999987 8999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhhhhcCCeeEeEEeecCcccc
Q 004772 88 WCLDELVRILDCKKRNGQTVVPVFYKVSPPAV 119 (731)
Q Consensus 88 wc~~El~~~~~~~~~~~~~v~Pify~v~p~~v 119 (731)
||+.|+..++.+...+...||||||+|++.++
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 99999999999863333378899999986554
No 12
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.85 E-value=9.8e-23 Score=187.73 Aligned_cols=108 Identities=15% Similarity=0.301 Sum_probs=80.5
Q ss_pred CCCcceeeEEEeccccccccChHHHHHHHHhh--cCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChh
Q 004772 206 FTAKCKYDVFLSFGGEETRTGIGSHLAAALRR--KQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKW 283 (731)
Q Consensus 206 ~~~~~~~dvFis~~~~D~~~~f~~~L~~~L~~--~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~ 283 (731)
....+.|||||||+++|.+ |+.+|+.+|++ .|+++|+|+++ +.+|+.+.++|.+||++|+++|+|+|++|+.|.|
T Consensus 5 ~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD-~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRD-ATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CTTSSSEEEEEECCGGGHH--HHHHHHHHHHC-------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECcc-ccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 4456789999999999964 79999999997 69999999999 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEEeecCCcccc
Q 004772 284 CLDELVKILDCLIKNTGQIVVPVFYRIDSSDVHK 317 (731)
Q Consensus 284 c~~El~~~~~~~~~~~~~~vlPv~~~vdpsdvr~ 317 (731)
|+.||..++.+. .....+||||||+|+++++..
T Consensus 82 c~~El~~al~~~-~~~~~~vIpv~~~v~~~~lp~ 114 (146)
T 3ub2_A 82 CKYQMLQALTEA-PGAEGCTIPLLSGLSRAAYPP 114 (146)
T ss_dssp HHHHHHHHHHTS-SSSSSEEEEEECSCCGGGSCG
T ss_pred HHHHHHHHHHHH-hhcCCcEEEEEcCCChhhCCH
Confidence 999999999886 333447889999998766543
No 13
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.84 E-value=2.3e-22 Score=186.50 Aligned_cols=103 Identities=20% Similarity=0.322 Sum_probs=92.9
Q ss_pred CCceeEEEeeecccCCCChHHH-HHHHHHhC--CCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccH
Q 004772 14 KSKYDVFLSFLGKDTGIGIRDH-LAAALRRK--QIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCL 90 (731)
Q Consensus 14 ~~~~dvFis~~~~d~~~~f~~~-L~~~l~~~--~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~ 90 (731)
++.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|++ ++.+|+.+.++|.++|++|+++|+|+|+||++|.||+
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~r-d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKR-DFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHH-HCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccc-cCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 578999999999998 79996 99999986 999999986 8999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhhhcCCeeEeEEee-cCcccc
Q 004772 91 DELVRILD-CKKRNGQTVVPVFYK-VSPPAV 119 (731)
Q Consensus 91 ~El~~~~~-~~~~~~~~v~Pify~-v~p~~v 119 (731)
.|+..++. +.++++..||||||+ +++..+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 99999986 456677889999994 555444
No 14
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.83 E-value=1.1e-21 Score=183.85 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=91.7
Q ss_pred CCCceeEEEeeecccCCCChHHHHHHHHHhC--CCeeeecCCCCCCCCCCccHHHHHHHh-hccEEEEEeccCccCcccc
Q 004772 13 AKSKYDVFLSFLGKDTGIGIRDHLAAALRRK--QIELFIDDEQEPQKGDEISPAVSKAIE-TSAVSIIIFSENYAYSTWC 89 (731)
Q Consensus 13 ~~~~~dvFis~~~~d~~~~f~~~L~~~l~~~--~~~~~~d~~~~~~~g~~~~~~i~~~i~-~s~~~ivv~S~~~~~S~wc 89 (731)
..+.|||||||+++|. .|+.+|+.+|++. |+++|+|++ ++.+|+.+.++|.++|+ +|+++|+|+|+||++|.||
T Consensus 13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~r-d~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDR-DVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCC-SSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCC-CCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4689999999999995 7999999999985 699999986 89999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhh-hhcCCeeEeEEeecCc
Q 004772 90 LDELVRILDCK-KRNGQTVVPVFYKVSP 116 (731)
Q Consensus 90 ~~El~~~~~~~-~~~~~~v~Pify~v~p 116 (731)
+.|+..++++. ++++..||||||+.-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999975 4556789999997654
No 15
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.82 E-value=2.2e-21 Score=184.65 Aligned_cols=100 Identities=20% Similarity=0.336 Sum_probs=86.8
Q ss_pred CCCCceeEEEeeecccCCCChHH-HHHHHHHh--CCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccc
Q 004772 12 TAKSKYDVFLSFLGKDTGIGIRD-HLAAALRR--KQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTW 88 (731)
Q Consensus 12 ~~~~~~dvFis~~~~d~~~~f~~-~L~~~l~~--~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~w 88 (731)
..++.|||||||+++|+ +|+. +|+.+|++ +|+++|+|++ ++.+|+.+.++|.++|++|+.+|+|+|+||++|.|
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~r-D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYES-YFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHH-HCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecc-cCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45789999999999997 7997 59999998 8999999986 89999999999999999999999999999999999
Q ss_pred cHHHHHHHHHh-hhhcCCeeEeEEeec
Q 004772 89 CLDELVRILDC-KKRNGQTVVPVFYKV 114 (731)
Q Consensus 89 c~~El~~~~~~-~~~~~~~v~Pify~v 114 (731)
|+.|+..++.+ .+++++.||||||+.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 99999999975 456677899999963
No 16
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.82 E-value=5.6e-21 Score=178.83 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=90.6
Q ss_pred CceeEEEeeecccC---------CCChHHHHHH-HHH-hCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCc
Q 004772 15 SKYDVFLSFLGKDT---------GIGIRDHLAA-ALR-RKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENY 83 (731)
Q Consensus 15 ~~~dvFis~~~~d~---------~~~f~~~L~~-~l~-~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~ 83 (731)
..|||||||+++|+ ++.||.+|.. .|+ +.|+++|+|++ ++.+|+.+.++|.++|++|+.+|+|+|+||
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~r-D~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y 79 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDR-DLIPTGTYIEDVARCVDQSKRLIIVMTPNY 79 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHH-HCCCCTTHHHHHHHHHHTBSEEEEEECHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcc-cccCccchHHHHHHHHHHcCEEEEEEccch
Confidence 36999999999997 3579999776 699 79999999986 899999999999999999999999999999
Q ss_pred c-CccccHHHHHHHHHhh-hhcCCeeEeEEeecCcc
Q 004772 84 A-YSTWCLDELVRILDCK-KRNGQTVVPVFYKVSPP 117 (731)
Q Consensus 84 ~-~S~wc~~El~~~~~~~-~~~~~~v~Pify~v~p~ 117 (731)
+ .|.||+.|+..++.+. ++++..||||||.-.+.
T Consensus 80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 7 9999999999999975 66778999999975554
No 17
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.78 E-value=1.5e-17 Score=177.96 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=175.9
Q ss_pred CCCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccc--cccccHHH
Q 004772 380 SDSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEE--SSKMGVIH 457 (731)
Q Consensus 380 ~~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~ 457 (731)
.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+...... ........
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREE 76 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHH
Confidence 34556678999999999999998643 5899999999999999999998752 4555421111 00112333
Q ss_pred HHHHHHHhhhc----------------CCcccCCCC---cHHHHHHHHcC-CCcEEEEeccCCchh-------HhhhhcC
Q 004772 458 VRDEVISQVMG----------------ENIKIGTPT---ITPNIKKRLQQ-RKVLIVLHDVDDNSK-------SFAVCLD 510 (731)
Q Consensus 458 l~~~ll~~l~~----------------~~~~~~~~~---~~~~l~~~L~~-k~~LLVLDdv~~~~~-------~l~~~~~ 510 (731)
+...+...+.. ......... ....+.+.+.. ++++|||||++.... .+...+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 33333332211 000000111 22334443432 499999999977432 1111111
Q ss_pred C---CCCCCEEEEEeCChhhhhh-----------c-CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 004772 511 L---FSPGSRIIITTRDKRLLYK-----------R-GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHY 575 (731)
Q Consensus 511 ~---~~~gs~IIiTTR~~~v~~~-----------~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~ 575 (731)
. ..++.++|+|++....... . .....+.+.+|+.+|+.+++......... ....+.+..+++.
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--~~~~~~~~~i~~~ 234 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--DVPENEIEEAVEL 234 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Confidence 0 1257889999887543221 1 11347899999999999999875421111 1224567899999
Q ss_pred hCCChHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCccHHHHHHHcHhCC---CHHHHHHHHHcccccCCcChhHHHhhh
Q 004772 576 ANGNPLALQVLGSSLYQ-KSKEQWKDKLHKLKLITDPNIYKVLKISYDGL---NWEEKEIFLDVACFFKGEDVDFVTRVQ 651 (731)
Q Consensus 576 ~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~k~~fl~la~f~~~~~~~~l~~~~ 651 (731)
++|+|+++..++..+.. .+...+...+. +.+...+...+..+ ++..+.++..+|+ ...+...+...+
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~ 305 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTL-------EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYL 305 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHH-------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999999999876432 23222211110 11222233333334 7888999999888 334545554443
Q ss_pred -----cCc-chHHHHHHHHHHCcCceeeCCeEEe-hHHHHHHHH
Q 004772 652 -----DDP-TSMRNGLNILVEKSLITISDNRLQM-HDMLQEIGK 688 (731)
Q Consensus 652 -----~~~-~~~~~~l~~L~~~sLi~~~~~~~~m-Hdlvr~~a~ 688 (731)
... ..+...++.|.+.+||...++.|.+ |++++++.+
T Consensus 306 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 222 2678899999999999987777764 889998764
No 18
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.77 E-value=7.5e-20 Score=171.33 Aligned_cols=101 Identities=19% Similarity=0.300 Sum_probs=90.9
Q ss_pred cceeeEEEeccccccccChHHHHHHHHhhc--CcccccccccccCCCCcccHHHHHHhh-hceEEEEEecCCCCCChhhH
Q 004772 209 KCKYDVFLSFGGEETRTGIGSHLAAALRRK--QIELFIDDEKEANKGDEISPAVSDAIE-TSLILIVIFSKDYASSKWCL 285 (731)
Q Consensus 209 ~~~~dvFis~~~~D~~~~f~~~L~~~L~~~--g~~~~~d~~~~~~~g~~~~~~i~~ai~-~s~~~i~v~S~~y~~S~~c~ 285 (731)
.+.|||||||+++| ..||.+|+.+|+++ |+++|+|+++ +.+|+.+.++|.++|+ +|+++|+|+|++|+.|.||+
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd-~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRD-VLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCS-SSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCC-CCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 56899999999999 57999999999874 6999999999 9999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEEeecC
Q 004772 286 DELVKILDCLIKNTGQIVVPVFYRIDS 312 (731)
Q Consensus 286 ~El~~~~~~~~~~~~~~vlPv~~~vdp 312 (731)
.||..++.+.....+.+||||+|+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999987644455689999998543
No 19
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.75 E-value=1.3e-19 Score=172.33 Aligned_cols=100 Identities=17% Similarity=0.359 Sum_probs=85.7
Q ss_pred CCcceeeEEEeccccccccChHHH-HHHHHhh--cCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChh
Q 004772 207 TAKCKYDVFLSFGGEETRTGIGSH-LAAALRR--KQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKW 283 (731)
Q Consensus 207 ~~~~~~dvFis~~~~D~~~~f~~~-L~~~L~~--~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~ 283 (731)
...+.|||||||+++|. +|+.+ |+..|++ .|+++|+|+++ +.+|+.+.++|.+||++|+++|+|+||+|+.|.|
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD-~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESY-FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHH-CCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEeccc-CCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 34578999999999995 69986 9999998 89999999999 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEEe
Q 004772 284 CLDELVKILDCLIKNTGQIVVPVFYR 309 (731)
Q Consensus 284 c~~El~~~~~~~~~~~~~~vlPv~~~ 309 (731)
|+.||..++.+.....+.+||||+|+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 99999999865545566789999986
No 20
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.75 E-value=5.5e-20 Score=170.54 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=88.8
Q ss_pred cceeeEEEeccccccccChHHH-HHHHHhhc--CcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhH
Q 004772 209 KCKYDVFLSFGGEETRTGIGSH-LAAALRRK--QIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCL 285 (731)
Q Consensus 209 ~~~~dvFis~~~~D~~~~f~~~-L~~~L~~~--g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~ 285 (731)
.+.|||||||+++|. .|+.+ |+..|+++ |+++|+|+++ +.+|+.+.++|.+||++|+++|+|+||+|+.|.||+
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd-~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRD-FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHH-CCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeecccc-CCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 468999999999996 69997 99999986 9999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEEe
Q 004772 286 DELVKILDCLIKNTGQIVVPVFYR 309 (731)
Q Consensus 286 ~El~~~~~~~~~~~~~~vlPv~~~ 309 (731)
.||..++.+.....+..+|||+|+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 999988754435567789999986
No 21
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=3e-16 Score=168.20 Aligned_cols=283 Identities=19% Similarity=0.187 Sum_probs=171.7
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccc----ccccccHH
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGE----ESSKMGVI 456 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~----~~~~~~~~ 456 (731)
++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+..... ......+.
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHH
Confidence 44456789999999999999 753 589999999999999999999886532 456552221 01111122
Q ss_pred HHHHHHHHh-----------hhc------CC--cccC----CCCcHHHHHHHHcC---CCcEEEEeccCCchh-------
Q 004772 457 HVRDEVISQ-----------VMG------EN--IKIG----TPTITPNIKKRLQQ---RKVLIVLHDVDDNSK------- 503 (731)
Q Consensus 457 ~l~~~ll~~-----------l~~------~~--~~~~----~~~~~~~l~~~L~~---k~~LLVLDdv~~~~~------- 503 (731)
..+...+.. +.. .. .... .......+.+.+.. ++++|||||++....
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 222222211 000 00 0000 11223334444432 489999999977432
Q ss_pred -HhhhhcCCCCCCCEEEEEeCChhhhhh----------c-C-CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 004772 504 -SFAVCLDLFSPGSRIIITTRDKRLLYK----------R-G-VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSE 570 (731)
Q Consensus 504 -~l~~~~~~~~~gs~IIiTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 570 (731)
.+...... .++.++|+|++....... . + ....+.+.+|+.+|+.+++...........+. ..
T Consensus 159 ~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~ 233 (357)
T 2fna_A 159 PALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YE 233 (357)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HH
T ss_pred HHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HH
Confidence 12212111 246789999997643221 1 1 13578999999999999998754211111111 17
Q ss_pred HHHHHhCCChHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCccHHHHHHHcHh-------CCCHHHHHHHHHcccccCCc
Q 004772 571 EVAHYANGNPLALQVLGSSLYQ-KSKEQWKDKLHKLKLITDPNIYKVLKISYD-------GLNWEEKEIFLDVACFFKGE 642 (731)
Q Consensus 571 ~i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~-------~L~~~~k~~fl~la~f~~~~ 642 (731)
.+++.|+|+|+++..++..+.. .+...|...+- ..+...+...+. .|++..+.++..+|+ . .
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~- 303 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL-------EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G- 303 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH-------HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-
Confidence 8999999999999999877642 33333322110 011122222222 678899999999998 3 3
Q ss_pred ChhHHHhh----hc---CcchHHHHHHHHHHCcCceeeCCeEE-ehHHHHHHH
Q 004772 643 DVDFVTRV----QD---DPTSMRNGLNILVEKSLITISDNRLQ-MHDMLQEIG 687 (731)
Q Consensus 643 ~~~~l~~~----~~---~~~~~~~~l~~L~~~sLi~~~~~~~~-mHdlvr~~a 687 (731)
+...+... .+ ....+...++.|.+.+||...++.|. .|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 55555432 22 12367889999999999998777777 589999874
No 22
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.74 E-value=9.7e-19 Score=163.61 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=88.9
Q ss_pred eeeEEEecccccc---------ccChHHHHH-HHHh-hcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCC
Q 004772 211 KYDVFLSFGGEET---------RTGIGSHLA-AALR-RKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYA 279 (731)
Q Consensus 211 ~~dvFis~~~~D~---------~~~f~~~L~-~~L~-~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~ 279 (731)
.|||||||+++|. +..|+.+|. +.|+ +.|+++|+|+++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD-~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRD-LIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHH-CCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEccc-ccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 6999999999996 346888855 4698 799999999988 999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHHHHhhcCCCEEEEEEEeec
Q 004772 280 -SSKWCLDELVKILDCLIKNTGQIVVPVFYRID 311 (731)
Q Consensus 280 -~S~~c~~El~~~~~~~~~~~~~~vlPv~~~vd 311 (731)
.|.||+.|+..++.+.....+..||||++.-.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~ 113 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSEL 113 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence 99999999999999876667889999988633
No 23
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=1.3e-15 Score=166.87 Aligned_cols=281 Identities=12% Similarity=0.031 Sum_probs=168.0
Q ss_pred CCCCCcccchhhHHHHHHhh-hhc--C--CCeEEEEE--EccCCchhhHHHHHHHHHhccc-----Cc-ceEEEeecccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLL-CLE--L--GDVRIVGI--WGMGGIGKTTIASVIFHQISGD-----FQ-GKCFMKNVGEE 449 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~~~~~~~~~ 449 (731)
..+..|+||+.++++|.++| ... . ...+.+.| +|++|+|||+||+.+++..... +. ..+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34577999999999999988 531 1 23556777 9999999999999999876543 12 234444 2
Q ss_pred cccccHHHHHHHHHHhhhcCCcccCC--CCcHHHHHHHHc--CCCcEEEEeccCCch-------hHhh---hhcCCC---
Q 004772 450 SSKMGVIHVRDEVISQVMGENIKIGT--PTITPNIKKRLQ--QRKVLIVLHDVDDNS-------KSFA---VCLDLF--- 512 (731)
Q Consensus 450 ~~~~~~~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~--~k~~LLVLDdv~~~~-------~~l~---~~~~~~--- 512 (731)
........++..++..++........ ......+...+. +++++|||||++... +.+. ..+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 23345566777777766543221111 113445555554 679999999997743 2222 111111
Q ss_pred C--CCCEEEEEeCChhhhhh---------cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhC----
Q 004772 513 S--PGSRIIITTRDKRLLYK---------RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYAN---- 577 (731)
Q Consensus 513 ~--~gs~IIiTTR~~~v~~~---------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 577 (731)
+ .+..+|+||+...+... ......+.+++|+.+++.++|..++...........+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 34458878875542211 11223489999999999999987652111111223467788999999
Q ss_pred --CChHHHHHHHHHhc------C---CCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccC----Cc
Q 004772 578 --GNPLALQVLGSSLY------Q---KSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFK----GE 642 (731)
Q Consensus 578 --GlPLal~~~~~~L~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~----~~ 642 (731)
|+|..+..++.... + -+...+...+..... ...+..++..|++..+.++..++++.. ..
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99976666554321 1 123333333332210 233445678899999999998887541 22
Q ss_pred ChhH-------HH-hhhcCc----chHHHHHHHHHHCcCceee
Q 004772 643 DVDF-------VT-RVQDDP----TSMRNGLNILVEKSLITIS 673 (731)
Q Consensus 643 ~~~~-------l~-~~~~~~----~~~~~~l~~L~~~sLi~~~ 673 (731)
+... +. ...+.. ..+...++.|.+.+||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 2221 22 222211 2567889999999999875
No 24
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=3.1e-13 Score=146.46 Aligned_cols=277 Identities=12% Similarity=0.035 Sum_probs=172.5
Q ss_pred CCCcccchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhccc--------CcceEEEeecccccccc-
Q 004772 385 LSGFVGLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGD--------FQGKCFMKNVGEESSKM- 453 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~- 453 (731)
+..|+||+.++++|.+++.. ..+..+.+.|+|++|+|||+||+.+++.+... ....+++. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 36799999999999988864 23346689999999999999999999876443 22234443 22222
Q ss_pred cHHHHHHHHHHhhhcCCcccCC---CCcHHHHHHHHcCCCcEEEEeccCCch-----hH-hhhhcCCCCCCCEEEEEeCC
Q 004772 454 GVIHVRDEVISQVMGENIKIGT---PTITPNIKKRLQQRKVLIVLHDVDDNS-----KS-FAVCLDLFSPGSRIIITTRD 524 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~---~~~~~~l~~~L~~k~~LLVLDdv~~~~-----~~-l~~~~~~~~~gs~IIiTTR~ 524 (731)
....+...++..+......... ......+...+..++.+|||||++... +. +..+.... .+..+|+||+.
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 4455566666665332221111 124556667777766699999997754 22 33444444 67889999886
Q ss_pred hhh----hhh--cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhC---CChHHH-HHHHHH--hc-
Q 004772 525 KRL----LYK--RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYAN---GNPLAL-QVLGSS--LY- 591 (731)
Q Consensus 525 ~~v----~~~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~~~~~--L~- 591 (731)
... ... ......+.+++++.++..++|...+...........+....+++.++ |+|..+ ..+-.. +.
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 521 111 11123889999999999999998763211111122345677888888 998843 333222 21
Q ss_pred ---CCCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccC-CcChh---HHHhhhcCc----chHHHH
Q 004772 592 ---QKSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFK-GEDVD---FVTRVQDDP----TSMRNG 660 (731)
Q Consensus 592 ---~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~-~~~~~---~l~~~~~~~----~~~~~~ 660 (731)
.-+.+.+...+.... ...+..++..|++.++.++..++.... +.... .+...++.. ..+..+
T Consensus 254 ~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 326 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDI 326 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 135566666665542 245677889999999988887776111 11111 222222111 267888
Q ss_pred HHHHHHCcCceee
Q 004772 661 LNILVEKSLITIS 673 (731)
Q Consensus 661 l~~L~~~sLi~~~ 673 (731)
+..|..+|||...
T Consensus 327 l~~L~~~gli~~~ 339 (384)
T 2qby_B 327 ISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHhCCCEEEE
Confidence 9999999999874
No 25
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=3.2e-13 Score=146.17 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=166.9
Q ss_pred CCCCCcccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhcccCc---ceEEEeecccccccccHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ---GKCFMKNVGEESSKMGVIH 457 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 457 (731)
..+..|+||+.+++.|.+++... ....+.+.|+|++|+||||||+.++......+. ..+|+. .........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 44578999999999999988742 344668899999999999999999988765532 334444 122223445
Q ss_pred HHHHHHHhhhcCCcccCC--CCcHHHHHHHHc--CCCcEEEEeccCCch-----hHhhhhcCC----CCCCCEEEEEeCC
Q 004772 458 VRDEVISQVMGENIKIGT--PTITPNIKKRLQ--QRKVLIVLHDVDDNS-----KSFAVCLDL----FSPGSRIIITTRD 524 (731)
Q Consensus 458 l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~--~k~~LLVLDdv~~~~-----~~l~~~~~~----~~~gs~IIiTTR~ 524 (731)
+...++..++........ ......+...+. +++.+||||+++... +.+..+... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 555555554332111111 112444555554 348999999996643 122222111 2345667888876
Q ss_pred hhhhhhcC-------CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhC---CChHHHHHHHHHhc---
Q 004772 525 KRLLYKRG-------VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYAN---GNPLALQVLGSSLY--- 591 (731)
Q Consensus 525 ~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---GlPLal~~~~~~L~--- 591 (731)
........ ....+.+++++.++..+++...+...........+....+++.++ |+|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 53322111 125789999999999999988653111112233456677788887 99985544333221
Q ss_pred ---C---CCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccC-C---cChh-------HHHhhhcC-
Q 004772 592 ---Q---KSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFK-G---EDVD-------FVTRVQDD- 653 (731)
Q Consensus 592 ---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~-~---~~~~-------~l~~~~~~- 653 (731)
+ -+.+.+..++.... ...+...+..|+...+.++..++.+.. + +... .+...++.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 13444555444431 345677788999999998888875432 2 1121 12222211
Q ss_pred c---chHHHHHHHHHHCcCceee
Q 004772 654 P---TSMRNGLNILVEKSLITIS 673 (731)
Q Consensus 654 ~---~~~~~~l~~L~~~sLi~~~ 673 (731)
. ..+...++.|...|||...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 2577889999999999774
No 26
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=2.3e-12 Score=139.71 Aligned_cols=300 Identities=12% Similarity=0.081 Sum_probs=179.7
Q ss_pred CCCCcccchhhHHHHHHhhhhc----CCCeEEEEEEccCCchhhHHHHHHHHHhcccC-cceEEEeecccccccccHHHH
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLE----LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF-QGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l 458 (731)
.++.++||+.++++|.+++... .+..+.+.|+|++|+|||||++.++....... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 4477999999999999988752 21234899999999999999999998876542 2334444 2333345566
Q ss_pred HHHHHHhhhcCCcccC--CCCcHHHHHHHHc--CCCcEEEEeccCCch----hHhhhhcCCCC----CCCEEEEEeCChh
Q 004772 459 RDEVISQVMGENIKIG--TPTITPNIKKRLQ--QRKVLIVLHDVDDNS----KSFAVCLDLFS----PGSRIIITTRDKR 526 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~--~~~~~~~l~~~L~--~k~~LLVLDdv~~~~----~~l~~~~~~~~----~gs~IIiTTR~~~ 526 (731)
...++..++....... .......+...+. +++.+||||+++... ..+........ .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 6666666543221111 1113344444443 568899999998764 22222222111 4667888887653
Q ss_pred hhhhcC-------CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh---------CCChHHHHHHHHHh
Q 004772 527 LLYKRG-------VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYA---------NGNPLALQVLGSSL 590 (731)
Q Consensus 527 v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~~~~L 590 (731)
...... ....+.+++++.++..+++...+...........+....+++.+ +|+|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322111 12368999999999999998876321111123456778899999 79986655544332
Q ss_pred c------C---CCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHccccc---C--CcChhHHHhh------
Q 004772 591 Y------Q---KSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFF---K--GEDVDFVTRV------ 650 (731)
Q Consensus 591 ~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~---~--~~~~~~l~~~------ 650 (731)
. + -+.+............ .+...+..|+...+.++..++.+. . ......+...
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 1233333333333211 123346678888888888777654 2 2222222111
Q ss_pred -hc--C--cchHHHHHHHHHHCcCceee-C-------Ce-------EEehHHHHHHHHHHHhhc
Q 004772 651 -QD--D--PTSMRNGLNILVEKSLITIS-D-------NR-------LQMHDMLQEIGKTIIRQE 694 (731)
Q Consensus 651 -~~--~--~~~~~~~l~~L~~~sLi~~~-~-------~~-------~~mHdlvr~~a~~~~~~e 694 (731)
.+ . .......+..|..+|||... . ++ +..|+++..+..+++.+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11 1 12677889999999999884 2 22 226677777777776654
No 27
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=1.7e-12 Score=140.60 Aligned_cols=279 Identities=11% Similarity=0.040 Sum_probs=167.6
Q ss_pred CCCCCcccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEeeccccccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMKNVGEESSKMG 454 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 454 (731)
..+..|+||+.++++|..++... ....+.+.|+|++|+|||+||+.+++...... ...+++. ......
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCC
Confidence 34478999999999999988543 34467889999999999999999998764431 1233443 233334
Q ss_pred HHHHHHHHHHhhhcCCcccCC--CCcHHHHHHHHc--CCCcEEEEeccCCch------hHhhhhcCCC-----CCCCEEE
Q 004772 455 VIHVRDEVISQVMGENIKIGT--PTITPNIKKRLQ--QRKVLIVLHDVDDNS------KSFAVCLDLF-----SPGSRII 519 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~--~k~~LLVLDdv~~~~------~~l~~~~~~~-----~~gs~II 519 (731)
...+...++..++........ ......+...+. +++.+||||+++... +.+..++.+. ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 556666676666443221111 113445555553 458899999997754 2222223222 4466788
Q ss_pred EEeCChhh--------hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhC---CChHHHHHHHH
Q 004772 520 ITTRDKRL--------LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYAN---GNPLALQVLGS 588 (731)
Q Consensus 520 iTTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---GlPLal~~~~~ 588 (731)
.||+.... .... ....+.+++++.++..+++...+...........+....+++.++ |+|..+..+..
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 88876522 1111 124789999999999999988763211111122345677888888 99954433322
Q ss_pred Hh----c--C---CCHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHcccccCCcC---hh----HHHhh--
Q 004772 589 SL----Y--Q---KSKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFKGED---VD----FVTRV-- 650 (731)
Q Consensus 589 ~L----~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~~~~~---~~----~l~~~-- 650 (731)
.. . + -+.+.+...+.... ...+..++..|++..+.++..++.+..+.. .. ....+
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 21 1 1 14455555555431 335667789999999988887774433322 11 11111
Q ss_pred -hcC-c---chHHHHHHHHHHCcCceee
Q 004772 651 -QDD-P---TSMRNGLNILVEKSLITIS 673 (731)
Q Consensus 651 -~~~-~---~~~~~~l~~L~~~sLi~~~ 673 (731)
.+. . ..+...++.|...|++...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 111 1 1677888999999999874
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=170.54 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=92.3
Q ss_pred CCCceeEEEeeecccCCCChH-HHHHHHHHh-----CCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCc
Q 004772 13 AKSKYDVFLSFLGKDTGIGIR-DHLAAALRR-----KQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYS 86 (731)
Q Consensus 13 ~~~~~dvFis~~~~d~~~~f~-~~L~~~l~~-----~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S 86 (731)
..+.|||||||+++|. .|| ..|...|+. .|+++|++++ |+.+|+.+.++|.++|++||..|+|+|++|+.|
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~r-d~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEER-DFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSS-SCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEcc-ccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4689999999999997 688 679999984 6899999997 899999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhh-hhcCCeeEeEEeecCcc
Q 004772 87 TWCLDELVRILDCK-KRNGQTVVPVFYKVSPP 117 (731)
Q Consensus 87 ~wc~~El~~~~~~~-~~~~~~v~Pify~v~p~ 117 (731)
.||..|+..++.+. ++++..||||||+..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999998864 67778999999975554
No 29
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=4.5e-11 Score=120.01 Aligned_cols=196 Identities=15% Similarity=0.088 Sum_probs=118.2
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
.....++||+..++.|..++..+. ..+.+.|+|++|+||||||+.+++.....+.....- .. .... ...+
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-----~~---~~~~-~~~~ 89 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP-----CG---VCDN-CREI 89 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC-----CS---CSHH-HHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-----Cc---ccHH-HHHH
Confidence 344569999999999999987543 235789999999999999999998765433110000 00 0000 0011
Q ss_pred HHhhhcCCccc--CCCCcHHHHHHHH--------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChhhh
Q 004772 463 ISQVMGENIKI--GTPTITPNIKKRL--------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKRLL 528 (731)
Q Consensus 463 l~~l~~~~~~~--~~~~~~~~l~~~L--------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~v~ 528 (731)
........... ........+...+ .+++.+|||||++... ..+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000000000 0000111222222 2457899999997754 33333344445677888888765321
Q ss_pred -hh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 529 -YK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 529 -~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.. ......+++++++.++..+++...+..... ....+....+++.++|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 122467899999999999999887743221 2234567889999999999998877654
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.28 E-value=1.2e-12 Score=156.76 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=90.7
Q ss_pred CcceeeEEEeccccccccChH-HHHHHHHhh-----cCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCC
Q 004772 208 AKCKYDVFLSFGGEETRTGIG-SHLAAALRR-----KQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASS 281 (731)
Q Consensus 208 ~~~~~dvFis~~~~D~~~~f~-~~L~~~L~~-----~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S 281 (731)
..+.||+||||+++|. .|+ .+|...|+. .|+++|++++| +.+|+.+.++|.+||++|+.+|+|+|++|+.|
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd-~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERD-FVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSS-CCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccc-cCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4679999999999995 567 679999974 68999999999 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCEEEEEEEeecC
Q 004772 282 KWCLDELVKILDCLIKNTGQIVVPVFYRIDS 312 (731)
Q Consensus 282 ~~c~~El~~~~~~~~~~~~~~vlPv~~~vdp 312 (731)
.||..|+..++.+...+.+.++|||||+--|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999988877655667889999998444
No 31
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.25 E-value=1.1e-10 Score=115.52 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=116.6
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|++..++.|.+++.... .+.+.|+|++|+|||+||+.+++.+........++... .........+ ..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~ 87 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVV-RH 87 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHH-HH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHH-HH
Confidence 3444679999999999999987543 33489999999999999999998764432222222210 1111111111 11
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChhhh-hh-cCCce
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKRLL-YK-RGVQS 535 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~~~ 535 (731)
.+....... . ....++.+|||||++... ..+...+.....+.++|+||+..... .. .....
T Consensus 88 ~~~~~~~~~-~------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 88 KIKEFARTA-P------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHHTSC-C------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhccc-C------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 111111100 0 012468899999998764 33444444445677888888765321 11 12234
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 536 VCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 536 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.+.+.+++.++..+++.+.+...... ...+....+++.++|+|..+..+...+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78999999999999998876432211 234567788999999999766554433
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.08 E-value=2e-08 Score=105.80 Aligned_cols=260 Identities=15% Similarity=0.145 Sum_probs=154.7
Q ss_pred CCCCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|.....|+|++..+..+..++... ....+.+.|+|++|+|||+||+.+++.....| .++. ........
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~----~~~~~~~~-- 78 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKPG-- 78 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC----TTTCCSHH--
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe----ccccCChH--
Confidence 334567999999999998887631 22345788999999999999999998764322 2222 11111111
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHc---CCCcEEEEeccCCch----hHhhhhcCCC------------------C
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQ---QRKVLIVLHDVDDNS----KSFAVCLDLF------------------S 513 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~---~k~~LLVLDdv~~~~----~~l~~~~~~~------------------~ 513 (731)
.+...+. .++.+|+||+++... ..+...+... .
T Consensus 79 ----------------------~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 79 ----------------------DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ----------------------HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ----------------------HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1111222 356799999998765 1121111110 1
Q ss_pred CCCEEEEEeCChhhh-hhc--CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 514 PGSRIIITTRDKRLL-YKR--GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 514 ~gs~IIiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
++.++|.||...... ..+ .....+.+.+++.++..+++...+.... .....+....++++++|+|..+..+...+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 245677666543211 111 1235789999999999999988763222 12334677889999999999888776655
Q ss_pred cCC---------CHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHccccc--CCcChhHHHhhhcCcc-hHH
Q 004772 591 YQK---------SKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFF--KGEDVDFVTRVQDDPT-SMR 658 (731)
Q Consensus 591 ~~~---------~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~--~~~~~~~l~~~~~~~~-~~~ 658 (731)
... +.+.....+..+ ......|+..++..+..+.... .+.....+...++... ...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 321 222233222221 1233467777777776655432 3345666666665544 445
Q ss_pred HHHHH-HHHCcCceeeCCeEEehHHHHHH
Q 004772 659 NGLNI-LVEKSLITISDNRLQMHDMLQEI 686 (731)
Q Consensus 659 ~~l~~-L~~~sLi~~~~~~~~mHdlvr~~ 686 (731)
..+.. +++.++|........+-+...++
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHHH
Confidence 54555 88999998875555555544444
No 33
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=3.3e-09 Score=111.59 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=113.1
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-Ccc-eEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQG-KCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~ 459 (731)
|.....++|++..++.|.+++..+. .+.+.|+|++|+|||++|+.+++.+... +.. ...+. .+...+. ...
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGI-DVV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSH-HHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccCh-HHH
Confidence 3445679999999999999986543 2338899999999999999999886432 211 22222 1111121 222
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHH-cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChhh-hhh-cC
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRL-QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKRL-LYK-RG 532 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~v-~~~-~~ 532 (731)
+.++..+...... + .+++.++||||++... ..+...+...++++++|+||..... ... ..
T Consensus 90 ~~~~~~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 90 RNQIKHFAQKKLH-------------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HTHHHHHHHBCCC-------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHhcccc-------------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 2222221110000 1 3458899999998754 2333334444567788888876432 111 12
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHH-HHHH
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLA-LQVL 586 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~ 586 (731)
....+.+.+++.++..+++...+..... ....+....+++.++|+|.. +..+
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3458899999999999999887632211 12345678899999999955 4444
No 34
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=5.9e-09 Score=109.82 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=115.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|.....++|++..++.|..++..+. .+.+.|+|++|+|||++|+.+++.+........++.. . .+...+. .....
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~-~-~~~~~~~-~~~~~ 95 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL-N-ASDERGI-NVIRE 95 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE-E-TTCHHHH-HTTHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe-e-ccccCch-HHHHH
Confidence 3445679999999999999987553 3348999999999999999999886433211112210 0 1110000 10111
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChhh-hhh-cCCce
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKRL-LYK-RGVQS 535 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~v-~~~-~~~~~ 535 (731)
.+..+.... . ...+++.++|+||++... ..+...+.....++++|+||..... ... .....
T Consensus 96 ~~~~~~~~~-~------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 96 KVKEFARTK-P------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHHSC-C------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHHhhC-C------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 111100000 0 001467899999998764 3344444445567888888876432 111 11234
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 004772 536 VCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 590 (731)
Q Consensus 536 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 590 (731)
.+.+.+++.++..+++...+.... .....+....+++.++|+|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT--CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 789999999999999988763221 12334677889999999999766555444
No 35
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.87 E-value=3.3e-08 Score=103.62 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=112.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc-cCcc-eEEEeecccccccccHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG-DFQG-KCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~l~ 459 (731)
|....+++|++..++.|.+++..+. .+.+.|+|++|+|||++|+.+++.+.. .+.. ...+. ......
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~-------- 81 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG-------- 81 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTC--------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccC--------
Confidence 3344669999999999999886543 233889999999999999999987632 2211 12222 110000
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHH------cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hh
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRL------QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LL 528 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L------~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~ 528 (731)
.......+.... .+++.++|+|+++... ..+...+...+++.++|+||.... +.
T Consensus 82 ---------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 82 ---------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ---------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred ---------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 001111222221 2457899999998765 334444444456778888876543 21
Q ss_pred hh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 004772 529 YK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSS 589 (731)
Q Consensus 529 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 589 (731)
.. ......+.+.+++.++..+++...+.... .....+....+++.++|+|..+......
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC--CCBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 12335789999999999999988763222 1233456788889999999876554443
No 36
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.85 E-value=5.9e-08 Score=104.19 Aligned_cols=195 Identities=15% Similarity=0.099 Sum_probs=115.5
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEV 462 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 462 (731)
.....++|++..++.|...+..+. ..+.+.|+|++|+|||+||+.+++.+....... ....+.......+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDNCREI 82 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHHHHHH
Confidence 344569999999999999986543 245788999999999999999998764322100 0000000001111
Q ss_pred HHhhhcC-----CcccCCCCcHHHHHHHHc-----CCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-h
Q 004772 463 ISQVMGE-----NIKIGTPTITPNIKKRLQ-----QRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-L 527 (731)
Q Consensus 463 l~~l~~~-----~~~~~~~~~~~~l~~~L~-----~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v 527 (731)
....... .......+....+...+. +++.++|+||++... ..+...+...+.+..+|++|.+.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1100000 000011112233333332 457899999998765 334444444455677777776442 2
Q ss_pred hhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 004772 528 LYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSS 589 (731)
Q Consensus 528 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 589 (731)
... ......+++.+++.++..+++...+-.... ....+....+++.++|+|..+..+...
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 111 123467899999999999999877632211 123456778999999999988776543
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.79 E-value=9.4e-07 Score=93.47 Aligned_cols=250 Identities=12% Similarity=0.169 Sum_probs=145.9
Q ss_pred CCCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
.....++|++..++.+..++... ....+.+.|+|++|+|||+||+.+++.....| ..+. . .....
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~---~~~~~----- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-A---PMIEK----- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-G---GGCCS-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-c---hhccc-----
Confidence 34567999999999999988743 23345689999999999999999988764433 1222 0 00000
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHH--cCCCcEEEEeccCCch----hHhhhhcCCC------------------CCC
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRL--QQRKVLIVLHDVDDNS----KSFAVCLDLF------------------SPG 515 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~k~~LLVLDdv~~~~----~~l~~~~~~~------------------~~g 515 (731)
...+...+ ..+..+|+||+++... ..+...+... .++
T Consensus 94 -------------------~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 94 -------------------SGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -------------------HHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -------------------hhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 11111111 1356789999998764 1122111110 113
Q ss_pred CEEEEEeCChhh-hh--hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc-
Q 004772 516 SRIIITTRDKRL-LY--KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY- 591 (731)
Q Consensus 516 s~IIiTTR~~~v-~~--~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~- 591 (731)
..+|.+|..... .. .......+.+++++.++..+++...+.... .....+....+++.+.|+|-.+..+...+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456666654321 11 112346889999999999999987763221 223456677888899999976665544321
Q ss_pred -----CC---CHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHccccc-CCcChhHHHhhhcCcc-hHHHHH
Q 004772 592 -----QK---SKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFF-KGEDVDFVTRVQDDPT-SMRNGL 661 (731)
Q Consensus 592 -----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~f~-~~~~~~~l~~~~~~~~-~~~~~l 661 (731)
+. +.+.....+.. +..+...++..++.++..++-.. .......+...++... .....+
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l 300 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVI 300 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTT
T ss_pred HHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 11 22333222222 12233345555566665555442 2234566666665544 566667
Q ss_pred H-HHHHCcCceeeC-CeE
Q 004772 662 N-ILVEKSLITISD-NRL 677 (731)
Q Consensus 662 ~-~L~~~sLi~~~~-~~~ 677 (731)
+ .|++.+||.... |+.
T Consensus 301 ~~~l~~~gli~~~~~g~~ 318 (338)
T 3pfi_A 301 EPYLLANGYIERTAKGRI 318 (338)
T ss_dssp HHHHHHTTSEEEETTEEE
T ss_pred hHHHHHcCceecCCCccc
Confidence 7 899999998874 444
No 38
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.69 E-value=6.7e-08 Score=96.65 Aligned_cols=175 Identities=12% Similarity=0.107 Sum_probs=103.4
Q ss_pred CCCCCcccch---hhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 383 TDLSGFVGLN---SRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 383 ~~~~~fvGR~---~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
....+|+|.+ ..++.+..++... ..+.+.|+|++|+|||+||+.+++..........++... .....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-~~~~~------- 94 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-IHASI------- 94 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-GGGGS-------
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-HHHHH-------
Confidence 3446788743 5556666655432 356788999999999999999998876554445555411 10000
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------hHhhhhcCC-CCCCC-EEEEEeCChh-----
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------KSFAVCLDL-FSPGS-RIIITTRDKR----- 526 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------~~l~~~~~~-~~~gs-~IIiTTR~~~----- 526 (731)
+. ... +.+ .++.+|||||++... ..+...+.. ...+. ++|+||+...
T Consensus 95 ------~~---------~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ------ST---------ALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ------CG---------GGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ------HH---------HHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 000 001 346799999997653 112222111 12232 4788776431
Q ss_pred ----hhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 004772 527 ----LLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSS 589 (731)
Q Consensus 527 ----v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 589 (731)
+.........+.+++++.++..+++...+..... ....+....+++.++|++-.+..+...
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 1111112267899999999999999887632221 223466788999999999877765543
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.67 E-value=8.7e-08 Score=91.96 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=41.5
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
....++||+.+++++.+.+.... .+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34569999999999999886532 456789999999999999999987643
No 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=8e-07 Score=92.19 Aligned_cols=162 Identities=10% Similarity=0.082 Sum_probs=98.2
Q ss_pred cccchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCc-------ceEEEeecccccccccHHHH
Q 004772 388 FVGLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ-------GKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~l 458 (731)
+.||+.|+++|...|.. ..+..+.+.|+|++|+|||++++.+++++..... ..+.+. .........+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHH
Confidence 78999999999988864 2445678899999999999999999998754321 123333 2222334455
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHH------cCCCcEEEEeccCCch--hHhhhhcCCC-CCCC--EEEEEeCChh-
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRL------QQRKVLIVLHDVDDNS--KSFAVCLDLF-SPGS--RIIITTRDKR- 526 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L------~~k~~LLVLDdv~~~~--~~l~~~~~~~-~~gs--~IIiTTR~~~- 526 (731)
...++.++.+.... .......+...+ .+++++++||+++... +.+..++.|. ..++ .+|.++...+
T Consensus 98 ~~~I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 55666665443221 122333343332 3567999999998864 3333333321 1223 2333343221
Q ss_pred ---hh-----hhcCCceEEEcCCCCHHHHHHHHHHhhh
Q 004772 527 ---LL-----YKRGVQSVCEVKGLKHNSALELFCRKAF 556 (731)
Q Consensus 527 ---v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 556 (731)
.+ ..+. ...+.+++++.+|-.+++..++-
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1221 25689999999999999998873
No 41
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=4.3e-07 Score=96.62 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=111.7
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc--Ccce-EEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD--FQGK-CFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~-~~~~~~~~~~~~~~~~~l 458 (731)
|.....++|++..++.|..++..+. .+.+.|+|++|+||||||+.++..+... +... ..+. .+...+.. .
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~-~ 105 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGIS-I 105 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHH-H
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchH-H
Confidence 3445679999999999999986543 2238899999999999999999876421 2211 1222 11111221 1
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hhhh-cC
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LLYK-RG 532 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~ 532 (731)
....+..+....... .... .....-..++-+|++|+++... ..+...+.......++|++|.... +... ..
T Consensus 106 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 106 VREKVKNFARLTVSK-PSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HTTHHHHHHHSCCCC-CCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHhhhcccc-cchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 222222211110000 0000 0000112345699999997764 233333433445667777765432 2111 11
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
....+.+.+++.++...++...+.... .....+....+++.++|.|..+..+..
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQEN--VKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 124789999999999999988763222 122346778999999999987555443
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.59 E-value=2.2e-07 Score=101.91 Aligned_cols=183 Identities=14% Similarity=0.165 Sum_probs=106.7
Q ss_pred CCCcc-cchhhH--HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcc--eEEEeecccccccccHHHHH
Q 004772 385 LSGFV-GLNSRI--EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQG--KCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 385 ~~~fv-GR~~el--~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 459 (731)
.+.|+ |....+ ..+....... +....+.|+|++|+||||||+.+++.+...+.. ..++. ...+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~-~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHP-GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHST-TSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHH
Confidence 35566 655443 2233332222 225678999999999999999999987665432 23333 11122
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh-------
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK------- 525 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~------- 525 (731)
..+...+... ....+...+..++-+|+|||++... +.+...+. ....|..||+||.+.
T Consensus 173 ~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 173 NDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 2333222211 1223444444467899999996543 11222221 135677899988763
Q ss_pred --hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 526 --RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 526 --~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
.+...+.....+.+++++.++-.+++.+.+...... ...+....|++.++|++-.+..+..
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 222223233567899999999999998876321111 1224567888999999987665443
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.57 E-value=1.2e-06 Score=92.11 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=101.4
Q ss_pred CCCCcc-cchhh--HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHH
Q 004772 384 DLSGFV-GLNSR--IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 384 ~~~~fv-GR~~e--l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 460 (731)
..++|+ |.... ...+..++.........+.|+|++|+||||||+.+++.....-...+++. ...+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----------~~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----------ADDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----------HHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----------HHHHHH
Confidence 345676 54433 33444444333223567889999999999999999987754322234443 111222
Q ss_pred HHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------hHhhhhcC-CCCCCCEEEEEeCCh--------
Q 004772 461 EVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------KSFAVCLD-LFSPGSRIIITTRDK-------- 525 (731)
Q Consensus 461 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------~~l~~~~~-~~~~gs~IIiTTR~~-------- 525 (731)
.+...+... ....+...+. ++.+|+|||++... ..+...+. ....+..||+|+.+.
T Consensus 79 ~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 79 AMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 222222111 1222333333 36799999997654 11111211 124566788887643
Q ss_pred -hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 526 -RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 526 -~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
.+...+.....+++++ +.++..+++...+..... .-..+....+++.+ |++-.+..+
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHHH
Confidence 1222223336789999 999999999888743221 22345677888888 887654443
No 44
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.56 E-value=1.2e-06 Score=90.15 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=104.3
Q ss_pred CCCCCCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 450 (731)
.....+++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.++......| ..+. .....
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHH
Confidence 334567999999999998877531 13355689999999999999999998864332 1121 11110
Q ss_pred cc-cc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCc-----------h----hHhhhhcC---
Q 004772 451 SK-MG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDN-----------S----KSFAVCLD--- 510 (731)
Q Consensus 451 ~~-~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~-----------~----~~l~~~~~--- 510 (731)
.. .+ .... ....+.......+.+|+||+++.. . ..+...+.
T Consensus 89 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 89 KKFIGEGASL-------------------VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CCSTTHHHHH-------------------HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HhccchHHHH-------------------HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 00 00 0000 111222333456789999999654 1 11222211
Q ss_pred --CCCCCCEEEEEeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHH
Q 004772 511 --LFSPGSRIIITTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLA 582 (731)
Q Consensus 511 --~~~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLa 582 (731)
....+..||.||.....+. .......+.++.++.++..+++...+.......+ .....++..+.| .|-.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHH
Confidence 1233566777776543221 1123357899999999999999887633221111 123567777776 5656
Q ss_pred HHHHHH
Q 004772 583 LQVLGS 588 (731)
Q Consensus 583 l~~~~~ 588 (731)
|..+..
T Consensus 227 i~~l~~ 232 (285)
T 3h4m_A 227 LKAICT 232 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.56 E-value=1.1e-06 Score=96.34 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=107.3
Q ss_pred CCCCCCcccchhhH---HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 382 STDLSGFVGLNSRI---EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 382 ~~~~~~fvGR~~el---~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
|.....++|.+..+ ..|...+..+. .+.+.|+|++|+||||||+.+++.....|. -+. . ...+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~---a--~~~~~~~- 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE---RIS---A--VTSGVKE- 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE---T--TTCCHHH-
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE---e--ccCCHHH-
Confidence 44557799999988 77777776544 467899999999999999999988754431 111 0 1111111
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhH-hhhhcCCCC-CCCEEEE-EeCChh--hhh-hcC
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKS-FAVCLDLFS-PGSRIII-TTRDKR--LLY-KRG 532 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~-l~~~~~~~~-~gs~IIi-TTR~~~--v~~-~~~ 532 (731)
.+.++... .......++.+|+||+++..... ...++.... ....+|. ||.+.. +.. ...
T Consensus 91 ir~~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 91 IREAIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHHHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHHHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhC
Confidence 11221110 01112356889999999887521 111121111 2234444 555442 111 112
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcCC-----CCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQN-----NRSPDLLELSEEVAHYANGNPLALQVLGSS 589 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 589 (731)
...++.+.+++.++..+++.+.+-... .......+....+++.++|.+-.+..+...
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345789999999999999988763211 112234567788999999998876655443
No 46
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.56 E-value=1.2e-06 Score=93.79 Aligned_cols=197 Identities=13% Similarity=0.060 Sum_probs=105.8
Q ss_pred CCCcccchhhHHHHHH---hhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 385 LSGFVGLNSRIEKIKS---LLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~---~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
...|+|++...+.+.. .+..+....+.+.|+|++|+|||+||+.+++.+...... +.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 4679999998777544 343333233678999999999999999999987643221 112111111112222222222
Q ss_pred HHHhhhcC---------------------C------cccCCCC----cHHHHHHHH-----cCC----CcEEEEeccCCc
Q 004772 462 VISQVMGE---------------------N------IKIGTPT----ITPNIKKRL-----QQR----KVLIVLHDVDDN 501 (731)
Q Consensus 462 ll~~l~~~---------------------~------~~~~~~~----~~~~l~~~L-----~~k----~~LLVLDdv~~~ 501 (731)
.+...... . ....... ....+.... .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221000 0 0000000 111221111 122 469999999876
Q ss_pred h----hHhhhhcCCCCCCCEEEEEeCC-----------------hhhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCC
Q 004772 502 S----KSFAVCLDLFSPGSRIIITTRD-----------------KRLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNN 560 (731)
Q Consensus 502 ~----~~l~~~~~~~~~gs~IIiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 560 (731)
. ..+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~- 276 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEED- 276 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcC-
Confidence 5 2233333332222 34444421 11222 234579999999999999988774322
Q ss_pred CChhHHHHHHHHHHHhC-CChHHHHHHHH
Q 004772 561 RSPDLLELSEEVAHYAN-GNPLALQVLGS 588 (731)
Q Consensus 561 ~~~~~~~~~~~i~~~~~-GlPLal~~~~~ 588 (731)
.....+....+++.+. |.|..+..+..
T Consensus 277 -~~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 277 -VEMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp -CCBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2234567788899998 88877766544
No 47
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=3.1e-07 Score=97.86 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=108.2
Q ss_pred CCCCCcccchhhHHHHHHhh-hhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEee----------------
Q 004772 383 TDLSGFVGLNSRIEKIKSLL-CLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKN---------------- 445 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---------------- 445 (731)
....+++|.+..++.|.+++ ..+. ... +.|+|++|+||||||+.++..+.....+.+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34466899999999999988 4433 233 8999999999999999999865322111111110
Q ss_pred -------cccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCC
Q 004772 446 -------VGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSP 514 (731)
Q Consensus 446 -------~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~ 514 (731)
..............+.++..+.... ... ... .+ ..+..++-++|||+++... ..+...+....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQME-QVD--FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTT-C----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhc-ccc--ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 0000000000001112221111100 000 000 00 0023466799999998865 333444433455
Q ss_pred CCEEEEEeCChh-hhhh-cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhH-HHHHHHHHHHhCCChHHHHHHHH
Q 004772 515 GSRIIITTRDKR-LLYK-RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDL-LELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 515 gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+..+|++|.+.. +... ......+++.+++.++..+++...+..... .-. .+....|++.++|.+..+..+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 778888776542 2111 123367899999999999999887632211 112 35677899999999887665544
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.5e-06 Score=95.61 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcC---------------CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeec
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLEL---------------GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNV 446 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 446 (731)
|....+++|++..+++|.+++.... +..+.+.|+|++|+|||+||+.+++... +. .+.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-- 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-- 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC--
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe--
Confidence 3445679999999999999986410 1346889999999999999999998872 21 12222
Q ss_pred ccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHH--HcCCCcEEEEeccCCch-------hHhhhhcCCCCCCCE
Q 004772 447 GEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKR--LQQRKVLIVLHDVDDNS-------KSFAVCLDLFSPGSR 517 (731)
Q Consensus 447 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~--L~~k~~LLVLDdv~~~~-------~~l~~~~~~~~~gs~ 517 (731)
.+.... .......+....... ............ ...++.+|+||+++... ..+...+. ..+..
T Consensus 110 --~s~~~~-~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~ 181 (516)
T 1sxj_A 110 --ASDVRS-KTLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTP 181 (516)
T ss_dssp --TTSCCC-HHHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSC
T ss_pred --CCCcch-HHHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCC
Confidence 111111 112222222111100 000000000001 13568899999997653 12222222 12334
Q ss_pred EEEEeCCh---hhhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 518 IIITTRDK---RLLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 518 IIiTTR~~---~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
||+++... .+.........+.+++++.++..+++...+...... ...+....|++.++|.+-.+..+
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 55554432 122222334578999999999999998776432211 12245678899999965544433
No 49
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.46 E-value=6.6e-06 Score=87.64 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=105.5
Q ss_pred CCCCCCCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 450 (731)
++....+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.++......| +.+. .....
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~-~~~l~ 154 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---FSIS-ASSLT 154 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEe-hHHhh
Confidence 334456799999999999887753 122356789999999999999999998764322 2222 11111
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcC----C
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLD----L 511 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~----~ 511 (731)
... ....... ....+......++.+|+||+++... ..+...+. .
T Consensus 155 ~~~--~g~~~~~---------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 155 SKW--VGEGEKM---------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp CSS--TTHHHHH---------------HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred ccc--cchHHHH---------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 000 0000000 1111222223567899999995431 11111111 1
Q ss_pred CCCCCEEEEEeCChhhh-h--hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 004772 512 FSPGSRIIITTRDKRLL-Y--KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLG 587 (731)
Q Consensus 512 ~~~gs~IIiTTR~~~v~-~--~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~ 587 (731)
...+..||.||.....+ . .......+.+...+.++..+++...+..... ....+....+++.+.| .+-.|..+.
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC--CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12344566566543211 1 1123457789999999999998777632211 1123567788888888 566777766
Q ss_pred HH
Q 004772 588 SS 589 (731)
Q Consensus 588 ~~ 589 (731)
..
T Consensus 296 ~~ 297 (357)
T 3d8b_A 296 RE 297 (357)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.44 E-value=9.2e-06 Score=82.24 Aligned_cols=183 Identities=12% Similarity=0.107 Sum_probs=100.1
Q ss_pred CCCcccchhhHHHHHHhhhhc----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCLE----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
..+++|.+...+.|.+++..- ....+.+.|+|++|+|||+||+.+++.....| ..+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 356899998888887765321 12345688999999999999999998764332 2222 111110000
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----------------hHhhhhc---CC--CC
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----------------KSFAVCL---DL--FS 513 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----------------~~l~~~~---~~--~~ 513 (731)
-. .... ....+.......+.+|+||+++... ..+..++ .. ..
T Consensus 81 ~~--~~~~---------------~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 81 GL--GAAR---------------VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp TH--HHHH---------------HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred Ch--hHHH---------------HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00 0000 1122233334567899999998751 1111111 11 12
Q ss_pred CCCEEEEEeCChhhhh-hc----CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHHH
Q 004772 514 PGSRIIITTRDKRLLY-KR----GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVLG 587 (731)
Q Consensus 514 ~gs~IIiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~~ 587 (731)
.+..+|.||.....+. .. .....+.++..+.++-.+++...+.... ...........+++.+.|.+- .|..+.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 3456666775543211 11 2346788999999999999988763322 222222234677888887654 555554
Q ss_pred HH
Q 004772 588 SS 589 (731)
Q Consensus 588 ~~ 589 (731)
..
T Consensus 223 ~~ 224 (262)
T 2qz4_A 223 NE 224 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.42 E-value=4.2e-06 Score=87.82 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=105.6
Q ss_pred CCCCCCCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 450 (731)
++..-.+++|.+..++.|.+.+.. .....+-+.|+|++|+|||+||+.+++.....| +.+. .
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~---- 84 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-S---- 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-H----
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-h----
Confidence 334456789999999999887731 112245689999999999999999998864432 1121 0
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcC---CC
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLD---LF 512 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~---~~ 512 (731)
. .+.....+. ........+......++.+|+||+++... ..+...+. ..
T Consensus 85 -----~----~l~~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 85 -----S----DLVSKWMGE----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp -----H----HHHTTTGGG----HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred -----H----HHhhcccch----HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 0 111110000 00001112222234567899999997542 11111111 12
Q ss_pred CCCCEEEEEeCChhhhh---hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 004772 513 SPGSRIIITTRDKRLLY---KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLGS 588 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~~ 588 (731)
..+..||.||.....+. .......+.++..+.++-.++|...+.... ..........+++.+.| .+-.|..+..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34555666776542211 112346778999999999999988773321 11123456778888877 4656665554
Q ss_pred H
Q 004772 589 S 589 (731)
Q Consensus 589 ~ 589 (731)
.
T Consensus 230 ~ 230 (322)
T 3eie_A 230 D 230 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.41 E-value=4e-06 Score=89.20 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=103.0
Q ss_pred CCCCCcccchhhHHHHHHhhhhc----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLE----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK 452 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 452 (731)
....+++|.+..++.|.+.+... ....+-+.|+|++|+|||+||+.+++.....| +.+. .
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~------ 117 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-S------ 117 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-H------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-H------
Confidence 34466899999999998876311 11234588999999999999999999874332 1111 0
Q ss_pred ccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCC---CC
Q 004772 453 MGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDL---FS 513 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~---~~ 513 (731)
. .+.....+ .... ....+......++.+|+||+++... ..+...+.. ..
T Consensus 118 ---~----~l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 118 ---S----DLVSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---H----HHHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---H----HHhhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 0 11111000 0001 1112222234578999999997643 111111111 12
Q ss_pred CCCEEEEEeCChhhh---hhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 004772 514 PGSRIIITTRDKRLL---YKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLGS 588 (731)
Q Consensus 514 ~gs~IIiTTR~~~v~---~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~~ 588 (731)
.+..||.||.....+ ........+.++..+.++-.++|...+..... .........|++.+.| .|-.|..+..
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566566544211 11134567889999999999999887632211 1123456778888887 5656666554
No 53
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.37 E-value=1.1e-05 Score=83.48 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=102.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhc----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLE----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESS 451 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 451 (731)
+....+++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.++......| ..+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 344567999999999998877431 12246789999999999999999998764322 1121 111000
Q ss_pred c--ccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCCC--
Q 004772 452 K--MGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDLF-- 512 (731)
Q Consensus 452 ~--~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~~-- 512 (731)
. ...... ....+......++.+|+||+++... ..+...+...
T Consensus 93 ~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 KYVGDGEKL-------------------VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SSCSCHHHH-------------------HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred cccchHHHH-------------------HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 0 000011 1111222234567899999996642 0111111111
Q ss_pred ---CCCCEEEEEeCChh-----hhhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HH
Q 004772 513 ---SPGSRIIITTRDKR-----LLYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-AL 583 (731)
Q Consensus 513 ---~~gs~IIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-al 583 (731)
+.+..||.||.... +.. .....+.++..+.++...++...+..... ....+....+++.+.|.+- +|
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHH
Confidence 13455666776542 222 23456788888888888888776632211 1123456788888988875 66
Q ss_pred HHHHH
Q 004772 584 QVLGS 588 (731)
Q Consensus 584 ~~~~~ 588 (731)
..+..
T Consensus 230 ~~l~~ 234 (297)
T 3b9p_A 230 TALAK 234 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 54
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.34 E-value=2.2e-05 Score=86.05 Aligned_cols=186 Identities=14% Similarity=0.149 Sum_probs=104.9
Q ss_pred CCCCCCCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 450 (731)
++....+++|.+...+.|.+.+.. .....+-+.|+|++|+|||+||+.++..... ..|+.. .
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v----~ 200 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSI----S 200 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEE----C
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEE----e
Confidence 344456789999999999876631 1123467899999999999999999988621 122220 0
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------------hHhhhhcCC------C
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------------KSFAVCLDL------F 512 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------------~~l~~~~~~------~ 512 (731)
.. . +..... ..........+......++.+|+||+++... .....++.. .
T Consensus 201 ~~-~-------l~~~~~----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 201 SS-D-------LVSKWL----GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp CC---------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred HH-H-------HHhhhc----chHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 00 0 111100 0111112333333334678999999998651 111112211 1
Q ss_pred CCCCEEEEEeCChhhhh---hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 004772 513 SPGSRIIITTRDKRLLY---KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLGS 588 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~~ 588 (731)
..+..||.||.....+. .......+.++..+.++-..+|...+.... ..........|++.+.| .+-.|..+..
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666775442211 113445778888899988898887763211 11123456778888887 4556666554
No 55
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.32 E-value=6.8e-06 Score=83.93 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=90.2
Q ss_pred CCcccchhhHHHHHHh-------hhh-cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHH
Q 004772 386 SGFVGLNSRIEKIKSL-------LCL-ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIH 457 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~-------L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 457 (731)
..++|....++++... +.. .....+.+.|+|++|+|||+||+.+++.....| +.+....... ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~-g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI-GFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT-TCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc-CCchHH
Confidence 4578888777766652 221 134477899999999999999999998754322 1121100000 000000
Q ss_pred HHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCc----------h----hHhhhhcCC---CCCCCEEEE
Q 004772 458 VRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDN----------S----KSFAVCLDL---FSPGSRIII 520 (731)
Q Consensus 458 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~----------~----~~l~~~~~~---~~~gs~IIi 520 (731)
.... ....+......++.+|+||+++.. . ..+...... .+....||.
T Consensus 109 ~~~~----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 109 KCQA----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HHHH----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HHHH----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 0000 111222233456889999998654 1 222222222 122344667
Q ss_pred EeCChhhhhh----cCCceEEEcCCCCH-HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC
Q 004772 521 TTRDKRLLYK----RGVQSVCEVKGLKH-NSALELFCRKAFRQNNRSPDLLELSEEVAHYANG 578 (731)
Q Consensus 521 TTR~~~v~~~----~~~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 578 (731)
||.....+.. ......+.+++++. ++-..++.... .. ..+....+++.+.|
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF---KDKERTTIAQQVKG 228 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTT
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcC
Confidence 7776644332 12246789999988 55555554422 11 23456778888877
No 56
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.31 E-value=8.2e-06 Score=88.02 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=102.4
Q ss_pred CCCCCCCcccchhhHHHHHHhhhhc----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc
Q 004772 381 DSTDLSGFVGLNSRIEKIKSLLCLE----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450 (731)
Q Consensus 381 ~~~~~~~fvGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 450 (731)
++....+++|.+..++.|.+++... ....+-+.|+|++|+|||+||+.++......| +.+. .....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhh
Confidence 3444567999999999999877321 12246789999999999999999988754322 1111 11100
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcC----C
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLD----L 511 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~----~ 511 (731)
.. ........ ....+.......+.+|+||+++... ..+...+. .
T Consensus 186 ~~--~~g~~~~~---------------~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 186 SK--YVGEGEKL---------------VRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp --------CHHH---------------HHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred cc--ccchHHHH---------------HHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 00 00000000 1111222223456899999997651 01111111 1
Q ss_pred CCCCCEEEEEeCChhhh-h--hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHHH
Q 004772 512 FSPGSRIIITTRDKRLL-Y--KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVLG 587 (731)
Q Consensus 512 ~~~gs~IIiTTR~~~v~-~--~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~~ 587 (731)
......||.||.....+ . .......+.++..+.++-.+++...+-.... ....+....+++.+.|..- +|..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12334566566543211 1 1123356889999999999999877632211 1233466788888888544 666655
Q ss_pred H
Q 004772 588 S 588 (731)
Q Consensus 588 ~ 588 (731)
.
T Consensus 327 ~ 327 (389)
T 3vfd_A 327 K 327 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.30 E-value=4.7e-06 Score=86.79 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=86.3
Q ss_pred CcccchhhHHHHHHhhhhc-------------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCc--ceEEEe-eccccc
Q 004772 387 GFVGLNSRIEKIKSLLCLE-------------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQ--GKCFMK-NVGEES 450 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~-~~~~~~ 450 (731)
.++|.+...+.|.+++... ......+.|+|++|+|||+||+.+++.+..... ...++. ......
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4899999998888765421 233456889999999999999999987644321 112222 110000
Q ss_pred ccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc-CCCcEEEEeccCCc---------h----hHhhhhcCCCCCCC
Q 004772 451 SKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ-QRKVLIVLHDVDDN---------S----KSFAVCLDLFSPGS 516 (731)
Q Consensus 451 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~k~~LLVLDdv~~~---------~----~~l~~~~~~~~~gs 516 (731)
... .......+...+. .++.+|+||+++.. . ..+...+.....+.
T Consensus 112 -----------------~~~----~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 112 -----------------GQY----IGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp -----------------CSS----TTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred -----------------hhc----ccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 000 0001111111111 14569999999844 2 23333333344567
Q ss_pred EEEEEeCChh----------hhhhcCCceEEEcCCCCHHHHHHHHHHhhh
Q 004772 517 RIIITTRDKR----------LLYKRGVQSVCEVKGLKHNSALELFCRKAF 556 (731)
Q Consensus 517 ~IIiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 556 (731)
.+|+||.... +... ....+.+++++.++-.+++...+.
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7888876432 1122 236789999999999999988763
No 58
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.30 E-value=1.8e-05 Score=83.39 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=100.8
Q ss_pred hhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCc
Q 004772 392 NSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENI 471 (731)
Q Consensus 392 ~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 471 (731)
+...+.|...+..+. -.+.+.++|++|+|||++|+.+++.+....... . .+.+.......+.........
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~--------~~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-H--------KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-T--------BCCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-C--------CCCCCCHHHHHHhcCCCCCEE
Confidence 445666666665332 245788999999999999999998764332100 0 000000001111111000000
Q ss_pred --cc---CCCCcHHHHH---HHH-----cCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hhhh-cC
Q 004772 472 --KI---GTPTITPNIK---KRL-----QQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LLYK-RG 532 (731)
Q Consensus 472 --~~---~~~~~~~~l~---~~L-----~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~ 532 (731)
.. ......+.++ +.+ .+++-++|+|+++... ..+...+...+++..+|++|.+.. +... ..
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00 0001222222 222 2356799999998765 345555555556677777776553 2221 22
Q ss_pred CceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 004772 533 VQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVL 586 (731)
Q Consensus 533 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 586 (731)
....+.+.+++.++..+++.... . ...+.+..+++.++|.|..+..+
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34678999999999999998775 1 12345678999999999866543
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.29 E-value=8.8e-05 Score=78.07 Aligned_cols=255 Identities=15% Similarity=0.173 Sum_probs=136.0
Q ss_pred CCCCCcccchhhHHHHHHhhhhc---CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLE---LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
.....++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. ... +... .....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~~--~~~~~l- 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPVL--VKQGDM- 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTTC--CSHHHH-
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chHh--cCHHHH-
Confidence 34456899988888887777543 223457899999999999999999988743321 111 0000 000000
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCC--------C----------CCCE
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLF--------S----------PGSR 517 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~--------~----------~gs~ 517 (731)
..+ ...+ .++.++++|+++... +.+....... + +...
T Consensus 94 ~~~--------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 AAI--------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp HHH--------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred HHH--------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 000 0111 234577888886643 2221111110 0 1122
Q ss_pred EE-EEeCChhhhhh--cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc---
Q 004772 518 II-ITTRDKRLLYK--RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY--- 591 (731)
Q Consensus 518 II-iTTR~~~v~~~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~--- 591 (731)
++ .|++...+... ........+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+..+...+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 33 34443322111 12234678999999999999988763211 223456788999999999976654443221
Q ss_pred ---CC---CHHHHHHHHHHhcCCCCccHHHHHHHcHhCCCHHHHHHHHHccc-cc-CCcChhHHHhhhcCcc-hHHHHHH
Q 004772 592 ---QK---SKEQWKDKLHKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVAC-FF-KGEDVDFVTRVQDDPT-SMRNGLN 662 (731)
Q Consensus 592 ---~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~fl~la~-f~-~~~~~~~l~~~~~~~~-~~~~~l~ 662 (731)
+. +.+....++..+. ..-..|+...+.++..++- |. .+.....+....+... ..++.++
T Consensus 231 ~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 11 2222233333221 1112455555555554432 32 2344555665554443 3344444
Q ss_pred -HHHHCcCceee-CCeEEeh
Q 004772 663 -ILVEKSLITIS-DNRLQMH 680 (731)
Q Consensus 663 -~L~~~sLi~~~-~~~~~mH 680 (731)
.|...|+|+.. .++.-..
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTE 318 (334)
T ss_dssp HHHHHTTSEEEETTEEEECH
T ss_pred HHHHHcCCeecccccHHhhH
Confidence 79999999998 4555433
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.29 E-value=1.2e-06 Score=83.43 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=41.4
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456999999999999988653 2456789999999999999999987644
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.28 E-value=1.5e-05 Score=83.69 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=104.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDE 461 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 461 (731)
|....+++|.+..++.|.+++..+. ...++.+.|++|+|||++|+.+++.+...| ..+. . ...+ ....+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~----~-~~~~-~~~i~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN----G-SDCK-IDFVRG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE----T-TTCC-HHHHHT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc----c-cccC-HHHHHH
Confidence 3445679999999999999987443 346778889999999999999998874222 2222 1 1111 222222
Q ss_pred HHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch-----hHhhhhcCCCCCCCEEEEEeCChh-----hhhhc
Q 004772 462 VISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDLFSPGSRIIITTRDKR-----LLYKR 531 (731)
Q Consensus 462 ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~~~~gs~IIiTTR~~~-----v~~~~ 531 (731)
.+........ ..+++.+|+||+++... ..+...+.....+.++|+||.... +...
T Consensus 92 ~~~~~~~~~~--------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR- 156 (324)
T 3u61_B 92 PLTNFASAAS--------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR- 156 (324)
T ss_dssp HHHHHHHBCC--------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH-
T ss_pred HHHHHHhhcc--------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh-
Confidence 2222111000 01367899999998865 223333333345678888887543 1222
Q ss_pred CCceEEEcCCCCHHHHHHHHH-------HhhhcCCCCChhHH-HHHHHHHHHhCCChHHHHHHHH
Q 004772 532 GVQSVCEVKGLKHNSALELFC-------RKAFRQNNRSPDLL-ELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 532 ~~~~~~~l~~L~~~ea~~L~~-------~~~~~~~~~~~~~~-~~~~~i~~~~~GlPLal~~~~~ 588 (731)
...+++++++.++-.+++. ..+..... .... +....+++.++|.+..+.....
T Consensus 157 --~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 157 --CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTIGELD 217 (324)
T ss_dssp --SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHHHHHH
T ss_pred --CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2478999999888543322 22211111 1112 5677888889888765444333
No 62
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.27 E-value=2.3e-05 Score=82.03 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=102.4
Q ss_pred CCCCCcccchhhHHHHHHhhhh---------c-CCCeEEEEEEccCCchhhHHHHHHHHHh-cccCcceEEEeecccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCL---------E-LGDVRIVGIWGMGGIGKTTIASVIFHQI-SGDFQGKCFMKNVGEESS 451 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~ 451 (731)
..-.+++|.+...+.|.+.+.. + ....+-+.|+|++|+|||+||+.+++.. ...| +.+. ......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHh
Confidence 3346689999988888876631 1 1224678999999999999999999886 2221 1121 111000
Q ss_pred cccHHHHHHHHHHhhhcCCcccCCCC-cHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCC---C
Q 004772 452 KMGVIHVRDEVISQVMGENIKIGTPT-ITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDL---F 512 (731)
Q Consensus 452 ~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~---~ 512 (731)
. ... .... ....+......++.+|+||+++... ..+...+.. .
T Consensus 85 ~-----------------~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 85 K-----------------WLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp S-----------------SCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred h-----------------hhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 0 000 0000 1111222224578899999997652 011111111 1
Q ss_pred CCCCEEEEEeCChhhh-h--hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHH
Q 004772 513 SPGSRIIITTRDKRLL-Y--KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN-PLALQVLGS 588 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~-~--~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~~~ 588 (731)
..+..||.||.....+ . .......+.++..+.++-.+++...+..... .........|++.+.|. +-.|..+..
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2344555566543211 1 1134467889999999999999887632211 11234567888888876 555666655
Q ss_pred H
Q 004772 589 S 589 (731)
Q Consensus 589 ~ 589 (731)
.
T Consensus 225 ~ 225 (322)
T 1xwi_A 225 D 225 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=1.8e-05 Score=83.70 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=105.2
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-Ccce-EEEeecccccccccHHHHHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGK-CFMKNVGEESSKMGVIHVRD 460 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~-~~~~~~~~~~~~~~~~~l~~ 460 (731)
.....++|.+..++.|...+..+. .+.+.++|++|+||||+|+.++..+... +... .-+. .+...+.. ..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~-~ir 94 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGID-VVR 94 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHH-HHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHH-HHH
Confidence 344568899999999988886543 2238899999999999999999876432 1111 1111 11111221 111
Q ss_pred HHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCChh-hhhh-cCCc
Q 004772 461 EVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDKR-LLYK-RGVQ 534 (731)
Q Consensus 461 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~ 534 (731)
..+..+...... ..+.+-++|+|+++... ..+...+...+...++|++|.... +... ....
T Consensus 95 ~~i~~~~~~~~~-------------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 95 NQIKDFASTRQI-------------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp THHHHHHHBCCS-------------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHhhccc-------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 222111110000 11236789999997654 334444444455667777765432 2111 1223
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 004772 535 SVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 585 (731)
Q Consensus 535 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 585 (731)
..+.+.+++.++..+.+...+-... ..-..+....+++.++|.+--+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~--~~i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEK--LKLSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT--CCBCHHHHHHHHHHHTTCHHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 5789999999999998877662211 112345677888999998875433
No 64
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.14 E-value=5.6e-06 Score=75.85 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|+...+.++.+.+..-......|.|+|++|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999998876433334457899999999999999998754
No 65
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.10 E-value=3.5e-05 Score=79.86 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=99.1
Q ss_pred CCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK 452 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 452 (731)
...+++|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.++......| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 345689999999988887643 123356789999999999999999998764322 1121
Q ss_pred ccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------------------hHhhhhcCCC--
Q 004772 453 MGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------------------KSFAVCLDLF-- 512 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------------------~~l~~~~~~~-- 512 (731)
...+..... +. ........+.......+.+|+||+++... ..+...+...
T Consensus 82 --~~~l~~~~~---g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 --GPELLTMWF---GE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHHHHHHH---TT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --hHHHHhhhc---Cc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 111111111 11 01113333444445678999999997532 1111112111
Q ss_pred CCCCEEEEEeCChhhh-hh----cCCceEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCChHH
Q 004772 513 SPGSRIIITTRDKRLL-YK----RGVQSVCEVKGLKHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGNPLA 582 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~GlPLa 582 (731)
..+..||.||.....+ .. ......+.++..+.++-.+++...+-..... ... ...++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 2345677777654322 11 1244678999999999999887766322111 111 23455566666543
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.07 E-value=3.1e-05 Score=85.45 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=83.5
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC-----cceEEEe-ecccccccccHH
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF-----QGKCFMK-NVGEESSKMGVI 456 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~-~~~~~~~~~~~~ 456 (731)
...+.++||+.+++.+.+.|.... ..-+.|+|++|+|||+||+.++..+...+ ....++. +..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 344569999999999999986533 33457999999999999999999875432 1112221 100
Q ss_pred HHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhcCCCCC-CCEEEEEeCChhh------hh
Q 004772 457 HVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCLDLFSP-GSRIIITTRDKRL------LY 529 (731)
Q Consensus 457 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~~~~~~-gs~IIiTTR~~~v------~~ 529 (731)
.... ..........+...-..++.+|++|.- .+....+.+.... ..++|.+|..... ..
T Consensus 246 -------~~~~----g~~e~~~~~~~~~~~~~~~~iLfiD~~---~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 246 -------TKYR----GEFEDRLKKVMDEIRQAGNIILFIDAA---IDASNILKPSLARGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCS
T ss_pred -------cccc----chHHHHHHHHHHHHHhcCCeEEEEeCc---hhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCH
Confidence 0000 000111233333333467889999921 1222223333333 3556665544321 01
Q ss_pred h-cCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 530 K-RGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 530 ~-~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
. ......+.++.++.++..+++....
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0 1123468999999999999998765
No 67
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=4.9e-05 Score=80.81 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=95.3
Q ss_pred CCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc-
Q 004772 385 LSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK- 452 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 452 (731)
-.+..|.+...++|.+.+.. +-..++-|.++|++|+|||.||++++......| +.+. .......
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhccc
Confidence 35678899888888776542 223356789999999999999999999876554 1222 1111110
Q ss_pred cc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhh---cCCC-
Q 004772 453 MG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVC---LDLF- 512 (731)
Q Consensus 453 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~---~~~~- 512 (731)
.+ .....+ ..+...-...+++|++|+++... ..+..+ +..+
T Consensus 223 vGese~~vr-------------------~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRMVR-------------------ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHHHH-------------------HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHH-------------------HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 00 111111 12222234678999999997643 011111 1122
Q ss_pred -CCCCEEEEEeCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 004772 513 -SPGSRIIITTRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 579 (731)
Q Consensus 513 -~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 579 (731)
..+..||.||-..+. ...-.....+.++..+.++-.++|..+.-+-.. ..+. ....+++.+.|.
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dv--dl~~lA~~t~G~ 353 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGI--NLRKVAEKMNGC 353 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSC--CHHHHHHHCCSC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccC--CHHHHHHHCCCC
Confidence 223345556654322 221235568899999999988998776632111 1111 135667777664
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.04 E-value=9.7e-05 Score=76.58 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHhhhh------------cCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 387 GFVGLNSRIEKIKSLLCL------------ELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++|++..++.|...+.. .......+.|+|++|+|||+||+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999887754 112245678999999999999999998874
No 69
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.03 E-value=3.5e-05 Score=85.15 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=100.8
Q ss_pred CCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 386 SGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
..++|.+..+++|.+++... ....+-+.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~------- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GP------- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HH-------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-ch-------
Confidence 46899999999998877532 23456689999999999999999988763222 1222 00
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCC--CCCCCE
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDL--FSPGSR 517 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~--~~~gs~ 517 (731)
.+...+.+ .........+.....+++.+|+||+++... ..+...+.. ...+.+
T Consensus 273 ------~l~~~~~g----~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 ------EIMSKLAG----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ------HHHTSCTT----HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ------Hhhhhhcc----hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 01110000 000002223344445678899999994321 112222221 123455
Q ss_pred EEEEeCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHH
Q 004772 518 IIITTRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN-PLALQVLGS 588 (731)
Q Consensus 518 IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~~~ 588 (731)
||.||..... .........+.++..+.++-.++|..++........ .....++..+.|. +-.|..+..
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHHHH
Confidence 6666664422 111234457899999999999999887632111111 1134566666664 555555543
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.01 E-value=2.8e-05 Score=92.49 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...+.++||+.++.++.+.|.... .+.+.|+|++|+|||+||+.++..+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445669999999999999886433 345689999999999999999988743
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=5.3e-05 Score=81.61 Aligned_cols=170 Identities=15% Similarity=0.190 Sum_probs=95.6
Q ss_pred CCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc-c
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES-S 451 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~ 451 (731)
.-.+..|.+...++|.+.+.. +-..++-|.++|++|+|||.||++++......| +.+. ..... .
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~sk 282 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQK 282 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhcc
Confidence 345789999999988875531 223467889999999999999999999876544 1222 11111 1
Q ss_pred ccc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhh---cCCC
Q 004772 452 KMG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVC---LDLF 512 (731)
Q Consensus 452 ~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~---~~~~ 512 (731)
..+ ..... ...+...-...+++|++|+++... ..+..+ +..+
T Consensus 283 ~vGesek~i-------------------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 283 YVGEGARMV-------------------RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SSSHHHHHH-------------------HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred cCCHHHHHH-------------------HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 001 11111 122222334678999999997542 011111 1112
Q ss_pred -C-CCCEEEEEeCChhh-----hhhcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 004772 513 -S-PGSRIIITTRDKRL-----LYKRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 579 (731)
Q Consensus 513 -~-~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 579 (731)
. .+..||.||-.... .........+.++..+.++-.++|..++-+-.. ..+. ....|++.+.|.
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dv--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGI--RWELISRLCPNS 414 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSC--CHHHHHHHCCSC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCC--CHHHHHHHCCCC
Confidence 2 23345556643322 211235678899998998888998776632111 1111 134566777664
No 72
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.95 E-value=1.9e-05 Score=76.54 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=39.8
Q ss_pred CCCcccchh----hHHHHHHhhhhcCCC--eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 385 LSGFVGLNS----RIEKIKSLLCLELGD--VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 385 ~~~fvGR~~----el~~L~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+|++... .++.+.+++...... .+.+.|+|++|+|||+||+.+++..........++.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345676543 344455555433221 267889999999999999999988766554555554
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.9e-05 Score=82.68 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=41.9
Q ss_pred CCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.-.+..|.+...++|.+.+.. +-..++-+.++|++|+|||.||++++......|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 345688999999888876542 223466789999999999999999999876443
No 74
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=6.2e-05 Score=77.95 Aligned_cols=144 Identities=14% Similarity=0.074 Sum_probs=87.3
Q ss_pred cchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc---ccCcceEEEeecccccccccHHHHHHHHHHhh
Q 004772 390 GLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS---GDFQGKCFMKNVGEESSKMGVIHVRDEVISQV 466 (731)
Q Consensus 390 GR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 466 (731)
|-++.++.|...+..+. .+...++|++|+|||++|..+++... ........+.. .....+... .+.++..+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~---~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP---EGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC---SSSCBCHHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC---CcCCCCHHH-HHHHHHHH
Confidence 44566778888776554 67889999999999999999987531 11223333331 000122211 22233222
Q ss_pred hcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCCCCCCCEEEEEeCCh-hhhhhcCCceEEEcCC
Q 004772 467 MGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDLFSPGSRIIITTRDK-RLLYKRGVQSVCEVKG 541 (731)
Q Consensus 467 ~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~~~~~~~l~~ 541 (731)
.... ..+++-++|+|+++... +.+...+...++.+.+|++|.+. .+....... .+++.+
T Consensus 75 ~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 75 NYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp TSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred hhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1110 01345689999998765 44555555556677877776554 343333334 889999
Q ss_pred CCHHHHHHHHHHhh
Q 004772 542 LKHNSALELFCRKA 555 (731)
Q Consensus 542 L~~~ea~~L~~~~~ 555 (731)
++.++..+.+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=7.1e-05 Score=80.83 Aligned_cols=170 Identities=19% Similarity=0.291 Sum_probs=95.9
Q ss_pred CCCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESS 451 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 451 (731)
..-.++.|.+...++|.+.+.. +-..++-|.++|++|+|||.||++++......| +.+. ......
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~-~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSP-ASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hhhhcc
Confidence 3446788999999888876542 223467789999999999999999999876543 2222 111111
Q ss_pred c-cc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhh---cCC
Q 004772 452 K-MG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVC---LDL 511 (731)
Q Consensus 452 ~-~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~---~~~ 511 (731)
. .+ ..... ...+...-...+++|++|+++... ..+..+ +..
T Consensus 254 k~~Gese~~i-------------------r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 254 KYIGESARII-------------------REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSSSHHHHHH-------------------HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHH-------------------HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 0 00 01111 111222234679999999997542 011111 111
Q ss_pred C--CCCCEEEEEeCChhhh-hhc----CCceEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCC
Q 004772 512 F--SPGSRIIITTRDKRLL-YKR----GVQSVCEVKGLKHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGN 579 (731)
Q Consensus 512 ~--~~gs~IIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~Gl 579 (731)
+ ..+..||.||-..+.+ ..+ .....+.++..+.++-.++|..++-+-... ..+ ...+++.+.|.
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 2 2345566676544322 111 134578888888888888887666322111 112 34566677664
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.90 E-value=0.00019 Score=74.34 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++|+...+.++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988876533334467899999999999999998864
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.90 E-value=0.00017 Score=73.13 Aligned_cols=49 Identities=22% Similarity=0.142 Sum_probs=36.0
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..++|.+..+.++.+.+..-......+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999998877754333345678999999999999999987654
No 78
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.89 E-value=2.2e-05 Score=79.83 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=84.8
Q ss_pred CCCCCcccchhhHHHHHHhhhh----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCL----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK 452 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 452 (731)
....+++|.+..++.|.+.+.. +....+-+.|+|++|+|||+||+.++......|-. +. .+.
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~----~~~- 79 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG----GSS- 79 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC----SCT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec----hHH-
Confidence 3446799999998888876641 11123347899999999999999999886543311 11 000
Q ss_pred ccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchh----------------HhhhhcCCC----
Q 004772 453 MGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSK----------------SFAVCLDLF---- 512 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~----------------~l~~~~~~~---- 512 (731)
+..... ..........+......++.+|+||+++.... .+..++...
T Consensus 80 ---------~~~~~~----~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 80 ---------FIEMFV----GLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp ---------TTTSCS----SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred ---------HHHhhc----chHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 000000 00111122233333445678999999965421 111122211
Q ss_pred --CCCCEEEEEeCChhhh-----hhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 513 --SPGSRIIITTRDKRLL-----YKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 513 --~~gs~IIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.....||.||.....+ ........+.++..+.++-.+++...+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1124566666644321 111233567888889888888887665
No 79
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=6.2e-05 Score=81.20 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=95.0
Q ss_pred CCCCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEES 450 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 450 (731)
...-.++.|.+...++|.+.+.. +-..++-|.++|++|+|||.||++++......| +.+. .....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~ 252 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLA-APQLV 252 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGC
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEe-hhhhh
Confidence 33446789999998888875431 223467789999999999999999999876543 1222 11111
Q ss_pred c-ccc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------h---HhhhhcC
Q 004772 451 S-KMG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------K---SFAVCLD 510 (731)
Q Consensus 451 ~-~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~---~l~~~~~ 510 (731)
. ..+ .....+.+ +...-...+++|++|+++... . .+...+.
T Consensus 253 ~~~vGese~~ir~l-------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 253 QMYIGEGAKLVRDA-------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp SSCSSHHHHHHHHH-------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hcccchHHHHHHHH-------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 1 001 11111111 122223568999999995432 0 1122222
Q ss_pred CCC--CCCEEEEEeCChhhh-hh----cCCceEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCC
Q 004772 511 LFS--PGSRIIITTRDKRLL-YK----RGVQSVCEVKGLKHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGN 579 (731)
Q Consensus 511 ~~~--~gs~IIiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~Gl 579 (731)
.+. .+..||.||...+.+ .. ......+.++..+.++-.++|..++-+-... .-+ ...+++.+.|.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 222 234455566544322 11 1244678899888888888887665322111 111 34566777664
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=4.3e-05 Score=72.60 Aligned_cols=120 Identities=17% Similarity=0.134 Sum_probs=63.0
Q ss_pred CCccc----chhhHHHHHHhhhhcC-CCeEEEEEEccCCchhhHHHHHHHHHhcc-cCcceEEEeecccccccccHHHHH
Q 004772 386 SGFVG----LNSRIEKIKSLLCLEL-GDVRIVGIWGMGGIGKTTIASVIFHQISG-DFQGKCFMKNVGEESSKMGVIHVR 459 (731)
Q Consensus 386 ~~fvG----R~~el~~L~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~ 459 (731)
++|++ ....++.+.+++..-. .....+.|+|++|+||||||+.++..+.. .-..+.++. ...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~ 79 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLI 79 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHH
Confidence 34554 3344444444443211 22467899999999999999999988752 222333433 22233
Q ss_pred HHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCC--ch----hHhhhhcC-CCCCCCEEEEEeCC
Q 004772 460 DEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDD--NS----KSFAVCLD-LFSPGSRIIITTRD 524 (731)
Q Consensus 460 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~--~~----~~l~~~~~-~~~~gs~IIiTTR~ 524 (731)
..+......... . .+...+. ++-+|||||++. .+ ..+...+. ....|..+|+||..
T Consensus 80 ~~~~~~~~~~~~-----~---~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 80 FRLKHLMDEGKD-----T---KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHTCC-----S---HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHhcCchH-----H---HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 333222221110 0 1222222 466899999973 22 22222222 22357788888864
No 81
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.85 E-value=0.00016 Score=75.05 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHhhhhcC-------CCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 387 GFVGLNSRIEKIKSLLCLEL-------GDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.++|.+..++.|...+.... .....+.|+|++|+|||+||+.++......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 47899999999988776431 113578999999999999999999876443
No 82
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=0.00012 Score=73.72 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=94.4
Q ss_pred CCCCCcccchhhHHHHHHhhhh--c--------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCL--E--------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK 452 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 452 (731)
....+++|.+...++|.+.+.. . ....+-+.|+|++|+||||||+.++......| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3446689999888888765432 0 11234588999999999999999998764332 2222 1000000
Q ss_pred ccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhh---cCC--C
Q 004772 453 MGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVC---LDL--F 512 (731)
Q Consensus 453 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~---~~~--~ 512 (731)
............+.......+.++++|+++... ..+... +.. .
T Consensus 85 -----------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 85 -----------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp -----------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred -----------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 000000001122223333457899999994321 011111 111 1
Q ss_pred CCCCEEEEEeCChhhh-hhc----CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHH
Q 004772 513 SPGSRIIITTRDKRLL-YKR----GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVL 586 (731)
Q Consensus 513 ~~gs~IIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~ 586 (731)
..+..||.||...... ... .....+.++..+.++-.+++...+-.. ...+. .....++..+.| ++--|..+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~--~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPD--IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcc--ccHHHHHHHcCCCCHHHHHHH
Confidence 2344566666544321 111 234577888888888888887665221 11111 113446666777 67666554
Q ss_pred H
Q 004772 587 G 587 (731)
Q Consensus 587 ~ 587 (731)
.
T Consensus 225 ~ 225 (257)
T 1lv7_A 225 V 225 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 83
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.80 E-value=0.00027 Score=82.96 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=84.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC-----cceEEEeecccccccccHH
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF-----QGKCFMKNVGEESSKMGVI 456 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~ 456 (731)
+...+.++||+.+++++...|.... ..-+.|+|++|+|||++|+.+++.+.... ....++. ...
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~~~----- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDM----- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C-------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----ecc-----
Confidence 3445679999999999999986533 33468999999999999999999874321 1111211 000
Q ss_pred HHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCchhHhhhhcCCCC-CCCEEEEEeCChhh------hh
Q 004772 457 HVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNSKSFAVCLDLFS-PGSRIIITTRDKRL------LY 529 (731)
Q Consensus 457 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~~~l~~~~~~~~-~gs~IIiTTR~~~v------~~ 529 (731)
+..........+...+......++.+|++|.-. +....+.+... ...++|.||..... -.
T Consensus 245 ----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~---~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ----------GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAI---DASNILKPSLARGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC-----------CCCTTSSSCEEEEECCTTTTHHHHTTCS
T ss_pred ----------cccccchHHHHHHHHHHHHHhcCCEEEEEcCch---hHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccH
Confidence 000001111123344444445678999999221 22222233333 34566666654331 00
Q ss_pred h-cCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 530 K-RGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 530 ~-~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
. ......+.++.++.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 0123578999999999999998654
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.80 E-value=0.00015 Score=85.24 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC------cceEEEeecccccccccHHH
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF------QGKCFMKNVGEESSKMGVIH 457 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 457 (731)
..+.++||+.+++++.+.|.... ..-+.|+|++|+|||+||+.++..+.... ...++..+......
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------ 255 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------ 255 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C------
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc------
Confidence 34569999999999999886443 34568999999999999999998764321 22233221111000
Q ss_pred HHHHHHHhhhcCCcccCCCCcHHH---HHHHH-cCCCcEEEEeccCCc---------h-hHhhhhcCCCC-CCCEEEEEe
Q 004772 458 VRDEVISQVMGENIKIGTPTITPN---IKKRL-QQRKVLIVLHDVDDN---------S-KSFAVCLDLFS-PGSRIIITT 522 (731)
Q Consensus 458 l~~~ll~~l~~~~~~~~~~~~~~~---l~~~L-~~k~~LLVLDdv~~~---------~-~~l~~~~~~~~-~gs~IIiTT 522 (731)
... ........ +...+ ..++.+|+||+++.. . +....+.+... .+.++|.+|
T Consensus 256 ----------~~~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 256 ----------GTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp ----------CCC---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEE
T ss_pred ----------ccc---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEe
Confidence 000 00011111 22222 235789999999865 1 22222233333 345666666
Q ss_pred CChhhhhh-------cCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 523 RDKRLLYK-------RGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 523 R~~~v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
........ ......+.++.++.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54322110 0112468999999999999887654
No 85
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0001 Score=78.67 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=93.9
Q ss_pred CCCCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccc
Q 004772 383 TDLSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESS 451 (731)
Q Consensus 383 ~~~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 451 (731)
..-.++.|.+...++|.+.+.. +-..++-|.++|++|.|||.||++++......| +.+. ......
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f---i~v~-~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF---LRIV-GSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE---EEEE-SGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE---EEEE-HHHhhh
Confidence 3446688999998888876532 223357789999999999999999999876544 1121 111111
Q ss_pred -ccc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhc---CC
Q 004772 452 -KMG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCL---DL 511 (731)
Q Consensus 452 -~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~---~~ 511 (731)
..+ .....+. .+...-...+++|++|+++... ..+..++ ..
T Consensus 255 k~vGesek~ir~-------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 255 KYLGDGPRLCRQ-------------------IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSSSHHHHHHHH-------------------HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHH-------------------HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 000 1111111 1222224568999999997542 0111111 11
Q ss_pred C--CCCCEEEEEeCChhhh-hhc----CCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 004772 512 F--SPGSRIIITTRDKRLL-YKR----GVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 579 (731)
Q Consensus 512 ~--~~gs~IIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~Gl 579 (731)
+ ..+..||.||-..+.+ ..+ .....+.++..+.++-.++|..++-+-. ...+. ....+++.+.|.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCC--CHHHHHHHCCSC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcC--CHHHHHHhCCCC
Confidence 2 2233455566544322 111 2345678888888888888877663211 11110 134566666654
No 86
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.73 E-value=0.00031 Score=77.23 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHhhh---hcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 385 LSGFVGLNSRIEKIKSLLC---LELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...++|.+..++.+..++. .+....+-+.++|++|+|||+||+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3679999998887665543 2322345688999999999999999998765
No 87
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.68 E-value=2.6e-05 Score=71.22 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|++..++++.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 57999999999988876422223457899999999999999887653
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=6.3e-05 Score=69.11 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=27.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...++|+|+.|+|||||++.++......-....++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457899999999999999999987654322245554
No 89
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.65 E-value=0.0013 Score=72.10 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=94.9
Q ss_pred CCCcccchhhHHHHHHhhhhc----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccc-c
Q 004772 385 LSGFVGLNSRIEKIKSLLCLE----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSK-M 453 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 453 (731)
..+++|.+..+++|.+.+..- ..-++-+.|+|++|+|||+||+.++......| +.+. ....... .
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh
Confidence 356899998888887765321 11234588999999999999999998764332 1222 1111100 0
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhc---CCC--C
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCL---DLF--S 513 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~---~~~--~ 513 (731)
+.. .......+.......+.+|+||+++... ..+..++ ..+ .
T Consensus 91 g~~------------------~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 GVG------------------AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp THH------------------HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ccc------------------HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 000 0002223444445678999999996531 1111221 111 2
Q ss_pred CCCEEEEEeCChhhhh-h----cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 004772 514 PGSRIIITTRDKRLLY-K----RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP 580 (731)
Q Consensus 514 ~gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 580 (731)
.+..||.||.....+. . ......+.++..+.++-.+++..++-......+. ....+++.+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 3556676776553321 1 1234578899888888888887665322111111 1344777788876
No 90
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.0002 Score=82.99 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=94.1
Q ss_pred CCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 386 SGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
.++.|.+..+++|.+.+.. +-..++-|.++|++|+|||+||++++......| +.+. ..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~------- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GP------- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HH-------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hH-------
Confidence 4578999988888876542 112367789999999999999999998765432 2222 00
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch------------hHhhhhc---CCC--CCCCE
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS------------KSFAVCL---DLF--SPGSR 517 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~------------~~l~~~~---~~~--~~gs~ 517 (731)
.+... ........+...+.......+.+|+||+++... .....++ ..+ ..+..
T Consensus 273 ------~l~sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 ------EIMSK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HHHSS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------Hhhcc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11111 000000002222333345679999999996542 0111111 111 12334
Q ss_pred EEEEeCChhhh-hh----cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 004772 518 IIITTRDKRLL-YK----RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP 580 (731)
Q Consensus 518 IIiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 580 (731)
||.||...+.+ .. ......++++..+.++-.++|..+.-+..... + -....+++.+.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~-d--vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-D--VDLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT-T--CCHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc-c--cCHHHHHHhcCCCC
Confidence 55565543221 11 12456789999999998899887652211111 1 11345777777653
No 91
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.0004 Score=81.55 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCcccchhhHHHHHHhhhhcC-------CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHH
Q 004772 386 SGFVGLNSRIEKIKSLLCLEL-------GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHV 458 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 458 (731)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++.....-...+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 458999999988888776421 11236899999999999999999988643322333333 11111110000
Q ss_pred HHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch----hHhhhhcCC-----------CCCCCEEEEEeC
Q 004772 459 RDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS----KSFAVCLDL-----------FSPGSRIIITTR 523 (731)
Q Consensus 459 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~----~~l~~~~~~-----------~~~gs~IIiTTR 523 (731)
...+...++ .....+|+||+++... ..+...+.. ...+.+||+||.
T Consensus 568 ----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 ----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 001222222 1334599999997765 222222211 123567888886
Q ss_pred Ch-----------------hhhhhcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 524 DK-----------------RLLYKRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 524 ~~-----------------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
.. .+... ...++.+.+|+.++-.+++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 21 11122 23588999999999888876654
No 92
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.42 E-value=0.00057 Score=70.35 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
.++.+.|+|++|+|||+||+.+++.....|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356788999999999999999999885433
No 93
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.38 E-value=0.0016 Score=65.42 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=35.9
Q ss_pred CCCCcccchhhHHHHHHhhhhcC----------CCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCLEL----------GDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+++|.+....++.+....-. .-.+-+.|+|++|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34568888877777766443110 1122388999999999999999998764
No 94
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.37 E-value=0.0017 Score=66.13 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=37.7
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcC----------CCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLEL----------GDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.....+++|.+...+++.+....-. .-.+-+.|+|++|+||||||+.++....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 3344678999888777766543110 1112388999999999999999998764
No 95
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.27 E-value=0.00023 Score=60.99 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=51.8
Q ss_pred CceeEEEeeecccCCCChHHHHHHHHHhCCCeeeecCCCCCCCCCCccHHHHHHHhhccEEEEEeccCccCccccHHHHH
Q 004772 15 SKYDVFLSFLGKDTGIGIRDHLAAALRRKQIELFIDDEQEPQKGDEISPAVSKAIETSAVSIIIFSENYAYSTWCLDELV 94 (731)
Q Consensus 15 ~~~dvFis~~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~~~g~~~~~~i~~~i~~s~~~ivv~S~~~~~S~wc~~El~ 94 (731)
.+|.+||||..+|. ...|...|.+.|+.. .| ..|+.|++.||+.+++..+|.||..|+.
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP----------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec----------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 47999999999982 334444444555532 23 4588999999999999999999999998
Q ss_pred HHHHhhhhcCCeeEeE
Q 004772 95 RILDCKKRNGQTVVPV 110 (731)
Q Consensus 95 ~~~~~~~~~~~~v~Pi 110 (731)
.+.+ .+..|+-|
T Consensus 62 ~A~~----~gkpIigV 73 (111)
T 1eiw_A 62 LARK----SSKPIITV 73 (111)
T ss_dssp HHTT----TTCCEEEE
T ss_pred HHHH----cCCCEEEE
Confidence 7765 33345554
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.27 E-value=0.00066 Score=70.37 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=35.7
Q ss_pred hhhHHHHHHhhhhcCC-CeEEEEEEccCCchhhHHHHHHHHHhc-ccCcceEEEe
Q 004772 392 NSRIEKIKSLLCLELG-DVRIVGIWGMGGIGKTTIASVIFHQIS-GDFQGKCFMK 444 (731)
Q Consensus 392 ~~el~~L~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 444 (731)
...++.+.+++..... ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3344455556653222 246788999999999999999998876 5544455554
No 97
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.19 E-value=0.00045 Score=59.20 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=52.5
Q ss_pred ceeeEEEeccccccccChHHHHHHHHhhcCcccccccccccCCCCcccHHHHHHhhhceEEEEEecCCCCCChhhHHHHH
Q 004772 210 CKYDVFLSFGGEETRTGIGSHLAAALRRKQIELFIDDEKEANKGDEISPAVSDAIETSLILIVIFSKDYASSKWCLDELV 289 (731)
Q Consensus 210 ~~~dvFis~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~~~g~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~ 289 (731)
..|.+||||+..| . ...|...|.+.|+... | ..|+.|+++|++.++....|.||..|+.
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P----------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c----------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 3689999999988 2 5556666644444211 1 5689999999999999999999999997
Q ss_pred HHHHHHhhcCCCEEEEE
Q 004772 290 KILDCLIKNTGQIVVPV 306 (731)
Q Consensus 290 ~~~~~~~~~~~~~vlPv 306 (731)
.+ ...+.+++-|
T Consensus 62 ~A-----~~~gkpIigV 73 (111)
T 1eiw_A 62 LA-----RKSSKPIITV 73 (111)
T ss_dssp HH-----TTTTCCEEEE
T ss_pred HH-----HHcCCCEEEE
Confidence 66 3455766666
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.16 E-value=0.003 Score=66.06 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..++|++..++.+...+..+. -+.|+|++|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 458999999998888776432 57899999999999999999876543
No 99
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.13 E-value=0.0088 Score=65.87 Aligned_cols=169 Identities=12% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCCCcccchhhHHHHHHhhhh--cC--------CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccc
Q 004772 384 DLSGFVGLNSRIEKIKSLLCL--EL--------GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKM 453 (731)
Q Consensus 384 ~~~~fvGR~~el~~L~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 453 (731)
...+++|.+..+.++.+.... .. .-.+-+.|+|++|+|||+||+.++...... .+.+.. .......
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~g-~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEEG-GGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeh-hHHHHhh
Confidence 446789999888887765432 10 112348999999999999999999876422 222221 1100000
Q ss_pred cHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc----CCCcEEEEeccCCch---------------hHhhhh---cCC
Q 004772 454 GVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ----QRKVLIVLHDVDDNS---------------KSFAVC---LDL 511 (731)
Q Consensus 454 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~----~k~~LLVLDdv~~~~---------------~~l~~~---~~~ 511 (731)
. ......++...+ ..+.++++|+++... ..+..+ +..
T Consensus 105 -~--------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 105 -V--------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -T--------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -h--------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 001111222222 235899999996431 111111 121
Q ss_pred C--CCCCEEEEEeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 004772 512 F--SPGSRIIITTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP 580 (731)
Q Consensus 512 ~--~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlP 580 (731)
+ ..+..++.||..+..+. .......+.++..+.++-.++|..++-+. ...+. .....++..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCS--STTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChH--HHHHHHHHhcCCCC
Confidence 1 12334555666554322 11234578899999998888887665221 11111 11345666777765
No 100
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.10 E-value=0.0022 Score=68.50 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+.|+|++|+|||+||+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998873
No 101
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.01 E-value=0.0019 Score=76.02 Aligned_cols=148 Identities=15% Similarity=0.211 Sum_probs=84.8
Q ss_pred CCCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccc-c
Q 004772 385 LSGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESS-K 452 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~ 452 (731)
..+++|.+..+++|.+++.. +-.....|.|+|++|+||||||+.++......| +.+.. ..... .
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~-~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLING-PEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEH-HHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEc-hHhhhhh
Confidence 35689999999999888753 123355789999999999999999988764332 22220 00000 0
Q ss_pred cc-HHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCCCcEEEEeccCCch---------------hHhhhhcCCC--CC
Q 004772 453 MG-VIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQRKVLIVLHDVDDNS---------------KSFAVCLDLF--SP 514 (731)
Q Consensus 453 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k~~LLVLDdv~~~~---------------~~l~~~~~~~--~~ 514 (731)
.+ .... ....+.......+.++++|+++... ..+...+... ..
T Consensus 279 ~g~~~~~-------------------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 279 AGESESN-------------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TTHHHHH-------------------HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred hhhHHHH-------------------HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 00 0000 1122223334567899999995332 1122222211 22
Q ss_pred CCEEEEEeCChhhh----hh-cCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 515 GSRIIITTRDKRLL----YK-RGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 515 gs~IIiTTR~~~v~----~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
+..+|.||.....+ .. ......+.+...+.++-.+++...+
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 44566666543221 11 1233567888899999999988765
No 102
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.90 E-value=0.011 Score=66.34 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=36.4
Q ss_pred CcccchhhHHHHHHhhhh----cCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 387 GFVGLNSRIEKIKSLLCL----ELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+.+|.+...+.+.+.+.. .......+.|+|++|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 367887777777554431 11135589999999999999999999887543
No 103
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.78 E-value=0.0022 Score=75.35 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHhhhhcC-------CCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 386 SGFVGLNSRIEKIKSLLCLEL-------GDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++|.+..++.+...+.... .....+.++|++|+|||+||+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899999988887765321 123478999999999999999999887
No 104
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.64 E-value=0.045 Score=55.40 Aligned_cols=148 Identities=15% Similarity=0.089 Sum_probs=77.0
Q ss_pred CCcccchhhHHHHHHhhhh-----------cCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeeccccccccc
Q 004772 386 SGFVGLNSRIEKIKSLLCL-----------ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMG 454 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 454 (731)
.++.|.+...++|.+.+.. +-.-.+-++|+|++|+||||||+.++...... .+.+.. .......
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~g-~~l~~~~- 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVKG-PELLNMY- 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEET-TTTCSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEEc-HHHHhhh-
Confidence 4567777777777654321 00112228999999999999999999876432 233321 1110000
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCcHHHHHHH-HcCCCcEEEEeccCCch------------hH---hhhhcCCC--CCCC
Q 004772 455 VIHVRDEVISQVMGENIKIGTPTITPNIKKR-LQQRKVLIVLHDVDDNS------------KS---FAVCLDLF--SPGS 516 (731)
Q Consensus 455 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~k~~LLVLDdv~~~~------------~~---l~~~~~~~--~~gs 516 (731)
.... ... ...+.+. -...+.++++|+++... .. +...+... ....
T Consensus 85 ~~~~-~~~----------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 VGES-ERA----------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp THHH-HHH----------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hhHH-HHH----------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0000 000 1111111 13457889999996531 00 11111111 1123
Q ss_pred EEEEEeCChhhhh-----hcCCceEEEcCCCCHHHHHHHHHHhh
Q 004772 517 RIIITTRDKRLLY-----KRGVQSVCEVKGLKHNSALELFCRKA 555 (731)
Q Consensus 517 ~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~ 555 (731)
-++.+|..+.++. .......+.++..+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3555666554322 11345678899999999889987765
No 105
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.63 E-value=0.0087 Score=71.07 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHhhhhcC------C-CeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 387 GFVGLNSRIEKIKSLLCLEL------G-DVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.++|.+..++.+...+.... + ....+.|+|++|+|||+||+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47999999999888775321 1 1357899999999999999999987643
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.58 E-value=0.045 Score=57.27 Aligned_cols=165 Identities=10% Similarity=0.025 Sum_probs=100.4
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc-ccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCC
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS-GDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGT 475 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 475 (731)
++.+.|. + .-.++..++|+.|.||++.+..+...+. ..|+....+. .. ....+..+...+-.
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~----------- 70 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQA----------- 70 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHH-----------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcC-----------
Confidence 3444454 2 2367899999999999999999988654 3343211111 11 11223222222110
Q ss_pred CCcHHHHHHHHcCCCcEEEEeccCC-ch----hHhhhhcCCCCCCCEEEEEeCC-------hhhhhh-cCCceEEEcCCC
Q 004772 476 PTITPNIKKRLQQRKVLIVLHDVDD-NS----KSFAVCLDLFSPGSRIIITTRD-------KRLLYK-RGVQSVCEVKGL 542 (731)
Q Consensus 476 ~~~~~~l~~~L~~k~~LLVLDdv~~-~~----~~l~~~~~~~~~gs~IIiTTR~-------~~v~~~-~~~~~~~~l~~L 542 (731)
.-+.+.+-++|+|+++. .. +.+...+...++++.+|+++-. ..+... ......++..++
T Consensus 71 --------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 71 --------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp --------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred --------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 11234566889999876 43 4455555555667777766532 123333 234467899999
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 004772 543 KHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGS 588 (731)
Q Consensus 543 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 588 (731)
+.++....+.+.+-... .....+.+..+++.++|.+..+.....
T Consensus 143 ~~~~l~~~l~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLN--LELDDAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp CTTHHHHHHHHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHHHHH
Confidence 99999988888763221 223456788899999999988776433
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.29 E-value=0.055 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.2
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987654
No 108
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.28 E-value=0.0045 Score=71.84 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=37.7
Q ss_pred CCCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 385 LSGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..+..|.+...++|.+.+... ....+-+.++|++|.|||.||++++......
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 345678888777777655321 1224567899999999999999999886543
No 109
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.28 E-value=0.011 Score=56.21 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=61.3
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHh---hhcCCcccCC----------C
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQ---VMGENIKIGT----------P 476 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~---l~~~~~~~~~----------~ 476 (731)
..|.|++..|.||||+|..++-+...+--.++++.-.... ...+-..++..+--. .+. ...... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMAT-GFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEccc-ccccCCCCcHHHHHHHH
Confidence 4566777777999999999998877776666666432211 122222332222000 000 000000 0
Q ss_pred CcHHHHHHHHcCC-CcEEEEeccCCc------h-hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 477 TITPNIKKRLQQR-KVLIVLHDVDDN------S-KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 477 ~~~~~l~~~L~~k-~~LLVLDdv~~~------~-~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
......++.+.+. -=|||||++... . +.+...+..-+....+|+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 0223344445444 449999998322 1 33444444445677899999976
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.25 E-value=0.0032 Score=64.64 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999876
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.12 E-value=0.01 Score=57.68 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=25.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|++|+|||||+..++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 45899999999999999999988 2224556665
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.96 E-value=0.004 Score=60.92 Aligned_cols=106 Identities=17% Similarity=0.077 Sum_probs=57.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
..++.|+|..|+||||++..++.+...+...+..+...... . +. .++++.++......... ....+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~----~~i~srlG~~~~~~~~~-~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI----RNIQSRTGTSLPSVEVE-SAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC----SSCCCCCCCSSCCEEES-STHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH----HHHHHhcCCCccccccC-CHHHHHHHHHH
Confidence 46889999999999999999999887665555554311110 1 10 11222222111111111 11223333332
Q ss_pred -----CCcEEEEeccCCch-h---HhhhhcCCCCCCCEEEEEeCCh
Q 004772 489 -----RKVLIVLHDVDDNS-K---SFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 489 -----k~~LLVLDdv~~~~-~---~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
+.-+||+|.+.... + .+..+. ..|..||+|-+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEeccc
Confidence 34599999997553 2 222222 2378899999843
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.71 E-value=0.025 Score=59.32 Aligned_cols=49 Identities=24% Similarity=0.137 Sum_probs=34.4
Q ss_pred HHHHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 396 EKIKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 396 ~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..|...|. .+-....++.|.|++|+||||||..++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34444453 22223569999999999999999999987665444566765
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.71 E-value=0.012 Score=59.29 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=59.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
..+++|+|+.|+|||||++.++..+...+.+.+.+....-........ .+ +.......+.......+.+.|..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~----~~---v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK----SI---VNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS----SE---EEEEEBTTTBSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc----ee---eeHHHhCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999876654433444443111000000000 00 00001111122356677777777
Q ss_pred CCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChh
Q 004772 489 RKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKR 526 (731)
Q Consensus 489 k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 526 (731)
.+=+|++|...+... ....+.....|..|++||.+..
T Consensus 98 ~p~illlDEp~D~~~-~~~~l~~~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 98 DPDVIFVGEMRDLET-VETALRAAETGHLVFGTLHTNT 134 (261)
T ss_dssp CCSEEEESCCCSHHH-HHHHHHHHHTTCEEEEEECCSS
T ss_pred CCCEEEeCCCCCHHH-HHHHHHHHccCCEEEEEeCcch
Confidence 888999999864432 1111111234667888887654
No 115
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.69 E-value=0.014 Score=56.08 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=34.0
Q ss_pred chhhHHHHHHhhhhc-CCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 391 LNSRIEKIKSLLCLE-LGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 391 R~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
|+..++.|.+.+... .....+++|+|++|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455677777666532 234679999999999999999999876643
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.65 E-value=0.016 Score=60.93 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=62.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcce-EEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGK-CFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+++|+|+.|+|||||.+.+...+....... +.+.+..+...... ...+...............+.+.|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~--------~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK--------KCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--------SSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc--------ccceeeeeeccccCCHHHHHHHHhh
Confidence 34899999999999999999987665442222 22321111100000 0000011111122336678999999
Q ss_pred CCCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCChhh
Q 004772 488 QRKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDKRL 527 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~~v 527 (731)
..+=+|++|...+.. ...........|..+|+|+.....
T Consensus 195 ~~PdvillDEp~d~e-~~~~~~~~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 EDPDIILVGEMRDLE-TIRLALTAAETGHLVFGTLHTTSA 233 (356)
T ss_dssp SCCSEEEESCCCSHH-HHHHHHHHHHTTCEEEEEESCSSH
T ss_pred hCcCEEecCCCCCHH-HHHHHHHHHhcCCEEEEEEccChH
Confidence 999999999997644 111112222346668888876543
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.61 E-value=0.0053 Score=57.60 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998864
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.011 Score=57.12 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+++|.+.+........+++|.|+.|+|||||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444444432234467999999999999999999987765
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.47 E-value=0.09 Score=56.60 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=28.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
.+.+|.++|++|+||||++..++..+...-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999999999998776654334433
No 120
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.45 E-value=0.035 Score=55.46 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..-+..+|....+....+.|+|++|.|||.||..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 444667776442334568999999999999999998863
No 121
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.37 E-value=0.0097 Score=63.06 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=36.3
Q ss_pred cccchhhHHHHHHhhhh-------------cCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 388 FVGLNSRIEKIKSLLCL-------------ELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
++|.+..++.|...+.. .....+.+.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 68988888888777621 011245688999999999999999998874
No 122
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.30 E-value=0.0087 Score=55.59 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+|+|.|++|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998864
No 123
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.24 E-value=0.012 Score=61.77 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=35.8
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+.....++|.+.....+...+.... ..-+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 3344568999886655443332222 22388999999999999999998764
No 124
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.18 E-value=0.069 Score=49.10 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=68.7
Q ss_pred eeEEEee--------------ecccCCCChHHHHHHHHHhCCCeeeecCCCCC----CC----CCCccHHHHHHHhhccE
Q 004772 17 YDVFLSF--------------LGKDTGIGIRDHLAAALRRKQIELFIDDEQEP----QK----GDEISPAVSKAIETSAV 74 (731)
Q Consensus 17 ~dvFis~--------------~~~d~~~~f~~~L~~~l~~~~~~~~~d~~~~~----~~----g~~~~~~i~~~i~~s~~ 74 (731)
=-+|++| ..+|. .+.+.|..--....+-.|.|-. +. .- -..|...|...|..|+.
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~H-d~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAH-DKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTT-TTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred cCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchh-hccccccccccHHHHHHHHHHHHHHhcCc
Confidence 3578888 33443 3444554444445665677742 22 22 33577899999999999
Q ss_pred EEEEeccCccCccccHHHHHHHH-HhhhhcCCeeEeEEeecC-ccccccccCcH
Q 004772 75 SIIIFSENYAYSTWCLDELVRIL-DCKKRNGQTVVPVFYKVS-PPAVRKQRLSF 126 (731)
Q Consensus 75 ~ivv~S~~~~~S~wc~~El~~~~-~~~~~~~~~v~Pify~v~-p~~v~~~~~~~ 126 (731)
+|+++|++...|.|-..|+..++ + .+..||-|.-+-+ .+++..-.|+|
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~----~~~PII~Vy~~~~~~~~i~~~~g~~ 132 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGT----KGLPVIVIYPDYDKKSDIVDSNGNF 132 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTT----TCCCEEEEETTCCSGGGTBCTTSCB
T ss_pred EEEEEecCccccchhHHHHHHHHHh----cCCcEEEEECCccccchhhhccccc
Confidence 99999999999999999999988 5 3445777765422 44555444554
No 125
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.17 E-value=0.019 Score=58.69 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.6
Q ss_pred CCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 406 LGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 406 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+...+|+|+|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 445789999999999999999999876654
No 126
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.14 E-value=0.019 Score=57.08 Aligned_cols=43 Identities=14% Similarity=-0.023 Sum_probs=31.0
Q ss_pred chhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 391 LNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 391 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
....+.++...+.........|+|.|++|+||||+|+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 11 TIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455544444334456789999999999999999998775
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.14 E-value=0.05 Score=59.51 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=24.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQ 438 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 438 (731)
+.+.|.|.+|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38899999999999999999887655443
No 128
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.14 E-value=0.069 Score=54.82 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
...+++|+|++|+||||++..++..+...-..+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 467999999999999999999998776543333343
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.10 E-value=0.035 Score=56.76 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=27.6
Q ss_pred EEEEEccCCchhhHHHHHHHHHhccc--CcceEEEe
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGD--FQGKCFMK 444 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~ 444 (731)
++.|.|++|+||||||.+++...... -..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998876554 24566765
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.09 E-value=0.039 Score=58.00 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=29.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999999999999987665545677776
No 131
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.09 E-value=0.029 Score=58.86 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=29.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|++|+||||||.+++......-..++|+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 468999999999999999999977655545567776
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.03 E-value=0.012 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.94 E-value=0.013 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|+|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.94 E-value=0.022 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+|+|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998775
No 135
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.94 E-value=0.013 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+|.|.|++|+||||+|+.++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 57899999999999999999873
No 136
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.94 E-value=0.021 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+|.|.|++|+||||+|+.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988764
No 137
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.85 E-value=0.015 Score=64.02 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=36.7
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++|++..++.+...+..+. -|.|+|++|+|||+||+.++....
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHh
Confidence 48999999988887775443 578999999999999999988653
No 138
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.84 E-value=0.018 Score=54.66 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998876
No 139
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.84 E-value=0.066 Score=49.23 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=56.3
Q ss_pred hHHHHHHHHhhcCcccccccccc---cCCC----CcccHHHHHHhhhceEEEEEecCCCCCChhhHHHHHHHHHHHhhcC
Q 004772 227 IGSHLAAALRRKQIELFIDDEKE---ANKG----DEISPAVSDAIETSLILIVIFSKDYASSKWCLDELVKILDCLIKNT 299 (731)
Q Consensus 227 f~~~L~~~L~~~g~~~~~d~~~~---~~~g----~~~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~~~~~~~ 299 (731)
....|...-....+--|.|..+. ...+ +.|...+...|..|+.+|+++|+++..|.|-.+|+..++. ..
T Consensus 33 yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~----~~ 108 (189)
T 3hyn_A 33 YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG----TK 108 (189)
T ss_dssp HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT----TT
T ss_pred HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH----hc
Confidence 34555555544455677776441 2222 3467788889999999999999999999999999988752 34
Q ss_pred CCEEEEEEEe
Q 004772 300 GQIVVPVFYR 309 (731)
Q Consensus 300 ~~~vlPv~~~ 309 (731)
+.+||-|..+
T Consensus 109 ~~PII~Vy~~ 118 (189)
T 3hyn_A 109 GLPVIVIYPD 118 (189)
T ss_dssp CCCEEEEETT
T ss_pred CCcEEEEECC
Confidence 6778877543
No 140
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.77 E-value=0.065 Score=56.15 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc------cCcceEEEe
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG------DFQGKCFMK 444 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 444 (731)
|..+|..+-....++.|+|++|+||||||..++..... .-..++|+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 33444333334678999999999999999999987432 223556765
No 141
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.71 E-value=0.014 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+|+|+|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 142
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.71 E-value=0.057 Score=56.95 Aligned_cols=36 Identities=33% Similarity=0.320 Sum_probs=29.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|.+|+||||||.+++......-..++|+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 458889999999999999999887655445677776
No 143
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.58 E-value=0.1 Score=56.18 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
..+++.++|++|+||||++..++..+...-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998776554344443
No 144
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.55 E-value=0.014 Score=55.36 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4678999999999999999988765444
No 145
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.55 E-value=0.015 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988753
No 146
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.55 E-value=0.11 Score=58.34 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=25.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKC 441 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 441 (731)
.+++.|+|++|.||||++..+...+...-..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 357889999999999999999887655433333
No 147
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.51 E-value=0.034 Score=52.48 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=24.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..+|.|.|++|+||||+++.++..+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999887543
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.51 E-value=0.019 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999765
No 149
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.51 E-value=0.019 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|++|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 150
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.45 E-value=0.031 Score=51.96 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.++++|+|..|+|||||+..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999999887654
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.45 E-value=0.016 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+.|.|+|++|+||||+|+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 152
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.42 E-value=0.021 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=23.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+|.|.|++|+||||+|+.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987753
No 153
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.41 E-value=0.018 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+|+|+|++|+||||||+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 154
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.39 E-value=0.023 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.37 E-value=0.19 Score=54.65 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
+..|...+ .+-....++.|.|.+|+|||+||..++...... -..++|+.
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33444444 333334588999999999999999999876543 34566665
No 156
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.37 E-value=0.12 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEEccCCchhhHHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886544
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.35 E-value=0.024 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998775
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.29 E-value=0.035 Score=57.41 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=35.0
Q ss_pred cccchhhHHHHHHhhhhc--CCCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 388 FVGLNSRIEKIKSLLCLE--LGDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
++|-...+..+...+... ...+.+++|.|+.|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466666666666555433 33467999999999999999999887665
No 159
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.28 E-value=0.094 Score=53.61 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=27.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc-cCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG-DFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~ 444 (731)
..+++|+|++|+||||++..++..+.. .-..+.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 568999999999999999999987763 333444443
No 160
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.24 E-value=0.034 Score=53.11 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=30.6
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 393 SRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 393 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.-+..|..++.. -...+.+.|+|++|+|||++|..+++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345666666643 222346899999999999999999988753
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.23 E-value=0.027 Score=52.47 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=22.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|+|++|+|||||++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.22 E-value=0.022 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 163
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.20 E-value=0.074 Score=56.33 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=59.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceE-EEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKC-FMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 487 (731)
..+++|+|+.|+|||||++.++..+.....+.+ ++...-+...... ..-+.......+.......++..|.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~--------~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK--------KSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCS--------SSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccC--------ceEEEeeecCCCHHHHHHHHHHHhh
Confidence 468999999999999999999876654323333 3221100000000 0000000011122335677888888
Q ss_pred CCCcEEEEeccCCchhHhhhhcCCCCCCCEEEEEeCCh
Q 004772 488 QRKVLIVLHDVDDNSKSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 488 ~k~~LLVLDdv~~~~~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
..+=+|++|.+.+... ....+.....|..++.|+...
T Consensus 208 ~~pd~illdE~~d~e~-~~~~l~~~~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 208 EDPDVIFVGEMRDLET-VETALRAAETGHLVFGTLHTN 244 (372)
T ss_dssp SCCSEEEESCCCSHHH-HHHHHHHHTTTCEEEECCCCC
T ss_pred hCcCEEEECCCCCHHH-HHHHHHHHhcCCEEEEEECcc
Confidence 8888999999975442 111122223455677776643
No 164
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.19 E-value=0.019 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+|+|+|++|+||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.19 E-value=0.025 Score=54.23 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|.|+.|+|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 166
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.18 E-value=0.019 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=18.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999987754
No 167
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.17 E-value=0.028 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|+|.|++|+||||+|+.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998774
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.17 E-value=0.025 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.16 E-value=0.023 Score=53.49 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987654
No 170
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.14 E-value=0.036 Score=57.68 Aligned_cols=48 Identities=25% Similarity=0.227 Sum_probs=32.8
Q ss_pred cchhhHHHHHHhhhh--cCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 390 GLNSRIEKIKSLLCL--ELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 390 GR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
+-+...+++.+.+.. ..+....+.|+|++|+||||+++.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334445555554432 234466789999999999999999998765444
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.13 E-value=0.032 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=22.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...|+|.|++|+||||+|+.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998875
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.028 Score=55.47 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=28.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|++|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458899999999999999999876654444566665
No 173
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.10 E-value=0.026 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.9
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|+|.|+.|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998765
No 174
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.09 E-value=0.025 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|++|+||||+|+.++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 175
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.09 E-value=0.046 Score=52.54 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=24.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+|.|.|++|+||||+|+.++..+...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35789999999999999999998876443
No 176
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.08 E-value=0.073 Score=56.02 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..++...+....+...+|+|+|.+|+|||||+..++..+...-
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g 107 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3344444443445578999999999999999999987765443
No 177
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.05 E-value=0.041 Score=53.08 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+|+|.|+.|+||||+|+.++.++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999998875443
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.04 E-value=0.03 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 179
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.01 E-value=0.025 Score=54.69 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..+++|+|+.|+|||||++.++.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 568999999999999999999877643
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.99 E-value=0.023 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+|.|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998763
No 181
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.99 E-value=0.03 Score=55.85 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+|+|.|++|+||||+|+.++..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999988754
No 182
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.98 E-value=0.029 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999887
No 183
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.97 E-value=0.082 Score=57.16 Aligned_cols=31 Identities=29% Similarity=0.653 Sum_probs=24.9
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceE
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKC 441 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 441 (731)
.++|+|.+|+|||||+..++.....++...+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 5789999999999999999987665543333
No 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.94 E-value=0.022 Score=53.86 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 185
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.91 E-value=0.55 Score=49.50 Aligned_cols=48 Identities=31% Similarity=0.315 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++|....+.++...+..-......|.|+|.+|.||+++|+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 458898888888877665332223346799999999999999886554
No 186
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.91 E-value=0.31 Score=49.67 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=28.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999987765544444443
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.87 E-value=0.033 Score=55.89 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.87 E-value=0.038 Score=53.95 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+++|.|++|+|||||++.++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358899999999999999999876544333455554
No 189
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.87 E-value=0.025 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++++|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999988763
No 190
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.84 E-value=0.034 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
+...+|+|+|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 191
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.81 E-value=0.034 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.|+|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
No 192
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.80 E-value=0.05 Score=56.13 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=30.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+.++|+|+|-||+||||.+..++.-+...-..+.-+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999999987766555555554
No 193
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.79 E-value=0.11 Score=53.58 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3458999999999999999999977654445666665
No 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.78 E-value=0.033 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+|+|+|++|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.077 Score=51.34 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=32.9
Q ss_pred cchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 390 GLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 390 GR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+.+...+.+...+... ..+.++|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444555555555433 36789999999999999999998876544
No 196
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.77 E-value=0.088 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.3
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987744
No 197
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.77 E-value=0.034 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 198
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.74 E-value=0.035 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|+|++|+||||+|+.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988763
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.73 E-value=0.035 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.3
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+|+|.|+.|+||||+|+.++.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987743
No 200
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.71 E-value=0.042 Score=53.38 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...++|.|.|++|+||||+|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998875
No 201
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.71 E-value=0.044 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|+|+|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998764
No 202
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.70 E-value=0.11 Score=54.59 Aligned_cols=29 Identities=21% Similarity=0.022 Sum_probs=23.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
...++|+|++|+|||||+..++..+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34789999999999999999988765443
No 203
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.68 E-value=0.035 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998763
No 204
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.67 E-value=0.056 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...++.|+|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999988764
No 205
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.66 E-value=0.042 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+++|+|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988754
No 206
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.64 E-value=0.14 Score=56.57 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=29.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
..++.|.|.+|+||||||.+++...... -..++|+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 4588999999999999999999887654 44566765
No 207
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.61 E-value=0.033 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 208
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.58 E-value=0.052 Score=58.53 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHhhhhc------------CCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 387 GFVGLNSRIEKIKSLLCLE------------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+|.+...+.|...+... ....+-+.++|++|+|||++|+.++..+...|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 4688887777776655321 01245688999999999999999998875443
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.57 E-value=0.039 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|.|+|++|+||||||+.++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998875
No 210
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.53 E-value=0.71 Score=49.01 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=34.5
Q ss_pred CcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 387 GFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 387 ~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|....+.++.+.+..-......|.|+|.+|+|||++|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 47788878888877665433322345899999999999998887653
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.53 E-value=0.036 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEccCCchhhHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~ 431 (731)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 212
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.50 E-value=0.039 Score=53.09 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..+|+|.|+.|+||||+|+.++..+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999876543
No 213
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.48 E-value=0.038 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|+|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.45 E-value=0.041 Score=52.87 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|+|+|++|+||||||+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999987653
No 215
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.45 E-value=0.042 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.42 E-value=0.097 Score=54.14 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=28.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
...+++|+|++|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998776543334443
No 217
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.36 E-value=0.08 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...++.|+|.+|+|||+||.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998763
No 218
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.34 E-value=0.04 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=23.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++++|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999987654
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.33 E-value=0.041 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+++|.|++|+|||||++.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997763
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.31 E-value=0.076 Score=51.62 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=29.9
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 393 SRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 393 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
...+.+...+.. .....|+|+|.+|+|||||+..++......
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344445544432 246788999999999999999998775433
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.29 E-value=0.043 Score=52.72 Aligned_cols=22 Identities=50% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.25 E-value=0.058 Score=53.08 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=27.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc------cCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG------DFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 444 (731)
..++.|.|++|+|||||+..++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 458999999999999999999875322 124566665
No 223
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.24 E-value=0.043 Score=62.35 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCCCCcccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 382 STDLSGFVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 382 ~~~~~~fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 334456899999998888777544 378999999999999999999876543
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.22 E-value=0.055 Score=50.63 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..+|+|+|+.|+||||+++.++..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999887643
No 225
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.20 E-value=0.04 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...|.|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998875
No 226
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.19 E-value=0.042 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+++|.|++|+|||||++.++....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999987543
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.18 E-value=0.092 Score=54.47 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
....+++|+|+.|+|||||++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346799999999999999999998766544
No 228
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.15 E-value=0.045 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|+|+|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.11 E-value=0.78 Score=46.30 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=30.9
Q ss_pred ccHHHHHHhhhceEEEEEecCCCCCChhhHHHHHHHHHHHhhcCCCEEEEEEEee
Q 004772 256 ISPAVSDAIETSLILIVIFSKDYASSKWCLDELVKILDCLIKNTGQIVVPVFYRI 310 (731)
Q Consensus 256 ~~~~i~~ai~~s~~~i~v~S~~y~~S~~c~~El~~~~~~~~~~~~~~vlPv~~~v 310 (731)
...++.+.+++++++|.|+.-.-..+..| .++...+ .+..++-|+.+.
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l------~~kp~ilVlNK~ 60 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL------KNKPRIMLLNKA 60 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC------SSSCEEEEEECG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH------CCCCEEEEEECc
Confidence 34678889999999999998766555555 2343332 344555555443
No 230
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.07 E-value=0.042 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.7
Q ss_pred eEEEEEEccCCchhhHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVI 429 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~ 429 (731)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 231
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.03 E-value=0.033 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.447 Sum_probs=22.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 232
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.01 E-value=0.041 Score=53.63 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998764
No 233
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.94 E-value=0.077 Score=52.35 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=26.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh-cccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI-SGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~ 444 (731)
..++.|.|.+|+|||+||.+++... ...-..++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4588999999999999999987653 33334555554
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.84 E-value=0.08 Score=54.33 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
...+++|+|++|+|||||++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 35699999999999999999999776544
No 235
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.84 E-value=0.068 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|.|.|+.|+||||+++.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999988765
No 236
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.82 E-value=0.065 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+|+|.|+.|+|||||++.++..+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 237
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.80 E-value=0.055 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|+.|+|||||++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998763
No 238
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.71 E-value=0.063 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.9
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988754
No 239
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.70 E-value=0.045 Score=55.82 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 240
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.68 E-value=0.052 Score=51.60 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=54.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcC--CcccCCCCcHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGE--NIKIGTPTITPNIKKRL 486 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--~~~~~~~~~~~~l~~~L 486 (731)
..+..++|+.|.||||.+...+++...+-..+..+...- ....+. ..+.+.++.. ....... ..+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~--d~r~~~----~~i~s~~g~~~~a~~~~~~---~~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI--DNRYSK----EDVVSHMGEKEQAVAIKNS---REILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------------CEEECTTSCEEECEEESSS---THHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CccchH----HHHHhhcCCceeeEeeCCH---HHHHHHH
Confidence 468899999999999999999988765544444432110 000000 0111112111 0011111 1333344
Q ss_pred cCCCcEEEEeccCCch-hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 487 QQRKVLIVLHDVDDNS-KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 487 ~~k~~LLVLDdv~~~~-~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
.+.-=+|++|.+.... +.+..+......|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 4333499999885543 22222211123477899998854
No 241
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.66 E-value=0.21 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=28.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|.+|+||||||..++......-..++|++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 458899999999999999999987655444556655
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.65 E-value=0.044 Score=52.46 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=21.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987653
No 243
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.64 E-value=0.48 Score=46.49 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=27.7
Q ss_pred ccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 389 VGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 389 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.=|+.+.+.+..++.. . -+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~----~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD----K-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT----S-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC----C-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3355555555555532 1 26789999999999999887765
No 244
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.64 E-value=0.063 Score=55.67 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 245
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.48 E-value=0.066 Score=55.18 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=24.7
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
....+++|.|+.|+|||||++.++..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999876543
No 246
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.44 E-value=0.069 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCchhhHHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+.+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999983
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.43 E-value=0.091 Score=51.87 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=25.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc-ccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS-GDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 444 (731)
..+++|.|++|+|||||++.++.... ..-..+.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45899999999999999999984322 2233444543
No 248
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.42 E-value=0.06 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 249
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.39 E-value=0.3 Score=52.93 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=33.7
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+..|..++ .+-....++.|.|.+|+||||||.+++.....+-..++|++
T Consensus 184 ~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33444444 23333458999999999999999999987655444566664
No 250
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.35 E-value=0.068 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998876
No 251
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.35 E-value=0.054 Score=53.89 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..|+|+|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.35 E-value=0.15 Score=64.55 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=31.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+.+.|+|++|+|||+||.+++.....+-..+.|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3568999999999999999999987766656677776
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.34 E-value=0.071 Score=52.33 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 254
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.33 E-value=0.074 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 255
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.33 E-value=0.073 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.8
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998876
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.33 E-value=0.11 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...+++|+|+.|+|||||++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999876654
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.32 E-value=0.065 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|.|+.|+|||||++.++...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.32 E-value=0.079 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.30 E-value=0.11 Score=48.52 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.++++|+|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.27 E-value=0.11 Score=50.50 Aligned_cols=33 Identities=18% Similarity=-0.092 Sum_probs=25.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
.|.+.|.||+||||+|..++.........+.++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 477899999999999999998876554334443
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.26 E-value=0.13 Score=47.27 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998876
No 262
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.19 E-value=0.074 Score=54.77 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++|.|+|+.|+||||||..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35889999999999999999998753
No 263
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.18 E-value=0.14 Score=49.31 Aligned_cols=110 Identities=17% Similarity=0.071 Sum_probs=53.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQ 488 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 488 (731)
..+..++|.-|.||||.+...+.+...+-..+..+.-.- ....+-. .+.+.++........... ..+.+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~----~i~s~~g~~~~a~~~~~~-~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEE----DVVSHNGLKVKAVPVSAS-KDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSG-GGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHH----HHHhhcCCeeEEeecCCH-HHHHHHHhc
Confidence 468889999999999999999988766655555443111 1111111 222222211110000001 111122223
Q ss_pred CCcEEEEeccCCch-hHhhhhcCCCCCCCEEEEEeCCh
Q 004772 489 RKVLIVLHDVDDNS-KSFAVCLDLFSPGSRIIITTRDK 525 (731)
Q Consensus 489 k~~LLVLDdv~~~~-~~l~~~~~~~~~gs~IIiTTR~~ 525 (731)
+-=+|++|.+.-.. +.+..+......|..||+|-++.
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSB
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEeccc
Confidence 33499999986543 22211111123478899999954
No 264
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.16 E-value=0.12 Score=53.04 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=29.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++|+|+|-||+||||+|..++..+...-..++.+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678899999999999999999988766544455554
No 265
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.11 E-value=0.11 Score=57.08 Aligned_cols=48 Identities=0% Similarity=-0.058 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...|.+..+.|.+..........+|.|.|++|+||||+|+.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344555555666655222223568999999999999999999999864
No 266
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.05 E-value=0.14 Score=50.98 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.+.|.||+|||||+..++..+. .-..+..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 57888999999999999999998776 433344443
No 267
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.99 E-value=0.082 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...|.|.|++|+||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998864
No 268
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.98 E-value=0.089 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+|.|.|++|+||||+|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998875
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.98 E-value=0.21 Score=51.84 Aligned_cols=81 Identities=22% Similarity=0.139 Sum_probs=48.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccCCCCcHHHHHHHHcCC
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIGTPTITPNIKKRLQQR 489 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 489 (731)
..++|+|+.|.|||||++.++..+.. ..+.+.+....+..... . + ....- ...........+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~----~---~~i~~--~~ggg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-H----K---NYTQL--FFGGNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-C----S---SEEEE--ECBTTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-c----h---hEEEE--EeCCChhHHHHHHHHhhhC
Confidence 37899999999999999998765543 24555555322111000 0 0 00000 0002233566778888888
Q ss_pred CcEEEEeccCCc
Q 004772 490 KVLIVLHDVDDN 501 (731)
Q Consensus 490 ~~LLVLDdv~~~ 501 (731)
+=+|+||.....
T Consensus 241 p~ilildE~~~~ 252 (330)
T 2pt7_A 241 PDRIILGELRSS 252 (330)
T ss_dssp CSEEEECCCCST
T ss_pred CCEEEEcCCChH
Confidence 999999998763
No 270
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.97 E-value=0.083 Score=53.87 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+++.|+|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999999999875
No 271
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.88 E-value=0.13 Score=55.49 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=29.2
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
.+++|.++|.+|+||||++..++..+... -..+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 47899999999999999999999887765 33444443
No 272
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.85 E-value=0.13 Score=54.37 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 398 IKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 398 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.+-+..+-....+++|+|++|.|||||++.++...
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333333333446689999999999999999998764
No 273
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.84 E-value=0.07 Score=49.70 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.+++|+|..|+|||||++.+...+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999998766543
No 274
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.84 E-value=0.066 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 275
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.83 E-value=0.14 Score=51.23 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++|+|.|-||+||||+|..++..+...-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57788999999999999999988776544455554
No 276
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.82 E-value=0.079 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|.|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999998875
No 277
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.80 E-value=0.076 Score=51.69 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+++|+|+.|+|||||.+.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999987764
No 278
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.78 E-value=0.13 Score=48.56 Aligned_cols=27 Identities=22% Similarity=0.004 Sum_probs=22.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 478899999999999998888776443
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.76 E-value=0.061 Score=55.65 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998753
No 280
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.69 E-value=0.13 Score=53.42 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=27.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc------CcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD------FQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 444 (731)
..++.|+|++|+|||+||..++...... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4589999999999999999999775332 23556665
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.65 E-value=0.077 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.|.|.|++|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998764
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.63 E-value=0.068 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=16.3
Q ss_pred eEEEEEEccCCchhhHHHHHHH-HHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIF-HQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~-~~~ 433 (731)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 654
No 283
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.63 E-value=0.098 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.60 E-value=0.99 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.4
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|++|+|||||...+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3789999999999999988864
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.59 E-value=0.14 Score=52.29 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=27.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCc-ceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQ-GKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~ 444 (731)
..+++|.|++|+|||||+..++..+..... .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999977654422 455554
No 286
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.59 E-value=0.18 Score=55.31 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++|+|+|.+|+||||++..++..+...-..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4679999999999999999999987765433344443
No 287
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.53 E-value=0.15 Score=53.53 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
...+++|+|+.|+|||||++.++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 35799999999999999999998776543
No 288
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.52 E-value=0.11 Score=53.34 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
....+++|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987765
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.46 E-value=0.091 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred EEEEEccCCchhhHHHHHHHHHhc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999987653
No 290
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.46 E-value=0.57 Score=50.50 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=33.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccC-cceEEEeecccccccccHHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDF-QGKCFMKNVGEESSKMGVIHVRDEVIS 464 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 464 (731)
+.++|.|.+|+|||+|+..+++.+.... +.++|. .+++ .......+.+.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC--cchHHHHHHHHhhh
Confidence 4679999999999999999998864433 334443 2222 22334455555544
No 291
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.45 E-value=0.26 Score=48.24 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..+|+|.|++|+||||+++.++..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 568999999999999999999988765
No 292
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.44 E-value=0.32 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|++|+|||||...+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 3789999999999999998753
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.36 E-value=0.17 Score=51.66 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 357899999999999999999998776543333333
No 294
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.35 E-value=0.34 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
...|.|.|+.|+||||+++.++..+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4588999999999999999999887654
No 295
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.34 E-value=0.088 Score=56.85 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=28.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+++|+|+|.+|+||||++..++......-..+.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 568999999999999999999987665433444443
No 296
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.31 E-value=0.23 Score=51.44 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++...|-||+||||+|..++..+...-..+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467777899999999999999988776655555554
No 297
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.31 E-value=0.17 Score=51.42 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=27.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.++|+|.|-||+||||+|..++..+...-..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999987765543444443
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.17 E-value=0.17 Score=51.09 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..++.|.|++|+|||||+..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 348999999999999999999875543
No 299
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.08 E-value=0.27 Score=51.26 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
....+++|+|.+|+|||||+..++......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999998766543
No 300
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.04 E-value=0.17 Score=56.23 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=31.8
Q ss_pred cccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+.+....+.+............+++|+|+.|+|||||++.++..+..
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444444444433111123468999999999999999999988754
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.00 E-value=0.1 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.247 Sum_probs=20.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|+.|+|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998754
No 302
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.94 E-value=0.13 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998865
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.83 E-value=0.18 Score=54.87 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=27.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...+++|+|++|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999998776543 3344443
No 304
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.78 E-value=0.25 Score=51.61 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=29.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc--ccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS--GDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 444 (731)
..+++.+.|-||+||||+|..++..+. ..-..+..+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 367899999999999999999998877 5545555554
No 305
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.77 E-value=0.28 Score=50.91 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=30.3
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3678889999999999999999998877655566555
No 306
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.72 E-value=0.36 Score=60.33 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=29.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++.|.|++|+||||||.+++......-..+.|++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 458999999999999999999987765544566765
No 307
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.72 E-value=0.42 Score=52.01 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=28.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
..++.|.|.+|+||||||..++...... -..++|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4589999999999999999999876543 33566665
No 308
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.67 E-value=0.28 Score=53.19 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=34.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc-CcceEEEeecccccccccHHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFMKNVGEESSKMGVIHVRDEVIS 464 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 464 (731)
+.++|.|.+|+|||+|+..+++.+... -+.++|. .+++- ......+...+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGER--TREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCC--SHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccC--cHHHHHHHHhhhc
Confidence 467999999999999999999986543 3444554 33322 2334555555544
No 309
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.61 E-value=0.092 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999987654
No 310
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.60 E-value=0.41 Score=50.08 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34667777899999999999999988776644455554
No 311
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.57 E-value=0.13 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|+.|+|||||.+.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998753
No 312
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.55 E-value=0.34 Score=47.54 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc-CcceEEE
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD-FQGKCFM 443 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 443 (731)
..+|.|.|+.|+||||+++.++..+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4589999999999999999999887654 3324443
No 313
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.49 E-value=0.3 Score=54.44 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred cccchhhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 388 FVGLNSRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 388 fvGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.+.|.+..+.+.+..........+|.++|++|+||||+|+.+...+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 444555555565555222223578999999999999999999987654
No 314
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.48 E-value=0.15 Score=53.98 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=22.7
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 315
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.47 E-value=0.11 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34899999999999999998864
No 316
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.46 E-value=0.11 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998864
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.46 E-value=1.1 Score=45.56 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=24.2
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
++++...+. ..+++|.|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 444555442 237899999999999999988643
No 318
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.41 E-value=0.15 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...++.|+|++|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998776
No 319
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.38 E-value=0.4 Score=46.61 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999988765
No 320
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.24 E-value=0.22 Score=49.01 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=26.2
Q ss_pred EEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 412 VGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
|+|.|-||+||||+|..++..+...-..+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998876654455554
No 321
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.15 E-value=0.31 Score=46.33 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.1
Q ss_pred EEEEEE-ccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIW-GMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 67999999999999988776544555554
No 322
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.14 E-value=0.37 Score=50.16 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=24.5
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
....+++|+|++|+|||||...+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44679999999999999999999876543
No 323
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.08 E-value=0.26 Score=55.24 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...+|.|.|++|+||||+|+.+..++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999988653
No 324
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.05 E-value=0.17 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998764
No 325
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.04 E-value=0.37 Score=46.99 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4588999999999999999999887654
No 326
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.02 E-value=0.13 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+++|+|+.|+|||||++.++--+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999987543
No 327
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.01 E-value=0.25 Score=54.73 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+|.++|++|.||||+|+.++..+...+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 56899999999999999999998765444
No 328
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.82 E-value=0.16 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|+.|+|||||.+.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 329
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.82 E-value=0.15 Score=59.82 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=39.5
Q ss_pred CCCcccchhhHHHHHHhhhhc-----------CCCeEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 385 LSGFVGLNSRIEKIKSLLCLE-----------LGDVRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 385 ~~~fvGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+.+|.+...+.|.+.+... -.....+.++|++|+|||+||+.++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356788888888887766421 11245688999999999999999999875443
No 330
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.80 E-value=0.48 Score=45.71 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
..|.|.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999887654
No 331
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.79 E-value=0.13 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998864
No 332
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.74 E-value=0.18 Score=53.87 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHH
Q 004772 396 EKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 396 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+.+.|....+...+++|.|+.|+|||||.+.++.
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344444443334467999999999999999999875
No 333
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.73 E-value=0.14 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998874
No 334
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.72 E-value=0.32 Score=47.70 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=27.6
Q ss_pred eEEEEEE-ccCCchhhHHHHHHHHHhccc-CcceEEEe
Q 004772 409 VRIVGIW-GMGGIGKTTIASVIFHQISGD-FQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~-G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 444 (731)
.++|+|+ +-||+||||+|..++..+... -..+..+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 5677777 469999999999999988776 44455554
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.65 E-value=0.14 Score=50.54 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998864
No 336
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.59 E-value=0.17 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..+++|.|+.|+|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998763
No 337
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.54 E-value=0.14 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34899999999999999998864
No 338
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.53 E-value=0.3 Score=52.38 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
...+++|+|++|+||||++..++..+...-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 357899999999999999999998776553333333
No 339
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.51 E-value=0.14 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998864
No 340
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.47 E-value=0.19 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.-.++|.|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 341
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.45 E-value=1.7 Score=57.14 Aligned_cols=146 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhh----------cCCcccCCCCcH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVM----------GENIKIGTPTIT 479 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~----------~~~~~~~~~~~~ 479 (731)
+-+.++|++|+|||+||+.+...... .....+. .+.......++..+-..+. .....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~------- 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD------- 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eecCCCHHHHHHHHHHHhhhccccCCccccCCCC-------
Q ss_pred HHHHHHHcCCCcEEEEeccCCch----------hHhhhhcCCCC------------CCCEEEEEeCChh-------hhhh
Q 004772 480 PNIKKRLQQRKVLIVLHDVDDNS----------KSFAVCLDLFS------------PGSRIIITTRDKR-------LLYK 530 (731)
Q Consensus 480 ~~l~~~L~~k~~LLVLDdv~~~~----------~~l~~~~~~~~------------~gs~IIiTTR~~~-------v~~~ 530 (731)
++++++.+||++... +.+.+.+...+ .+..+|.++-... -...
T Consensus 1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Q ss_pred cCCceEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh
Q 004772 531 RGVQSVCEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYA 576 (731)
Q Consensus 531 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 576 (731)
.....++.++..+.++-.++|.....+.-...+.....+..++..+
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 342
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.41 E-value=0.15 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+++|.|+.|.|||||.+.++--+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987543
No 343
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.40 E-value=0.61 Score=46.54 Aligned_cols=29 Identities=3% Similarity=-0.014 Sum_probs=22.2
Q ss_pred ccHHHHHHhhhceEEEEEecCCCCCChhh
Q 004772 256 ISPAVSDAIETSLILIVIFSKDYASSKWC 284 (731)
Q Consensus 256 ~~~~i~~ai~~s~~~i~v~S~~y~~S~~c 284 (731)
...++...+++++++|.|++-+-..+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 34688899999999999998665544444
No 344
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.40 E-value=0.21 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
+-|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998753
No 345
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.38 E-value=0.13 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.1
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|+.|+|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988653
No 346
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.37 E-value=0.15 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999998874
No 347
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.37 E-value=0.4 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=22.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+.+.|+|.+|.||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35889999999999999998876654
No 348
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.33 E-value=0.16 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|+|+.|+|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999874
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.30 E-value=0.23 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999874
No 350
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.28 E-value=0.16 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998864
No 351
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.25 E-value=0.21 Score=47.84 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=24.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
..+|+|.|+.|+||||+|+.++.++.-
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 358999999999999999999998753
No 352
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.19 E-value=0.26 Score=50.35 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34589999999999999999998765
No 353
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.14 E-value=0.16 Score=50.65 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999998874
No 354
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.00 E-value=0.16 Score=54.19 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.|-.+|..+-....++.|+|++|+|||||+..++-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 344444322223458999999999999999988744
No 355
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.99 E-value=0.17 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..+++|+|+.|+|||||.+.++--
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 348999999999999999998753
No 356
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.96 E-value=0.2 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|.|.+|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998864
No 357
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.96 E-value=0.17 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.+++|.|+.|.|||||.+.++--+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4799999999999999998875443
No 358
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.95 E-value=0.65 Score=44.14 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=27.1
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.|+|-|.-|+||||.++.+++.+......+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4778899999999999999998877654454443
No 359
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.94 E-value=0.58 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCeEEEEEEccCCchhhHHHHHHHH
Q 004772 407 GDVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 407 ~~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
...++..|.|.+|.||||+..+.+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3478999999999999999988763
No 360
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.87 E-value=0.17 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||++.++-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 361
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.86 E-value=0.22 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
-.++|.|++|+||||+|+.++.++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998876
No 362
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.76 E-value=0.23 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
+-|.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999999874
No 363
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.71 E-value=0.18 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999998864
No 364
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.70 E-value=0.17 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEEEEccCCchhhHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~ 431 (731)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 365
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.68 E-value=0.18 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|+.|+|||||.+.++--
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999988743
No 366
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.68 E-value=0.18 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.+++|.|+.|+|||||.+.++--
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998753
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.52 E-value=0.19 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+|+|+|+.|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998765
No 368
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.38 E-value=0.23 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEccCCchhhHHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 369
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.35 E-value=0.4 Score=45.92 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=25.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCc
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQ 438 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 438 (731)
..|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999998865554
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.33 E-value=0.56 Score=59.46 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=37.7
Q ss_pred chhhHHHHHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 391 LNSRIEKIKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 391 R~~el~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...-...|-.+|. .+-....++.|+|++|+||||||.+++......-..++|++
T Consensus 364 I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3334445555553 22223568999999999999999999988765555677776
No 371
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.32 E-value=0.25 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999988653
No 372
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.28 E-value=0.43 Score=48.50 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=31.9
Q ss_pred hHHHHHHhhhhcCCCeEEEEEEc---cCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 394 RIEKIKSLLCLELGDVRIVGIWG---MGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 394 el~~L~~~L~~~~~~~~vv~I~G---~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+.++.+.+... .++++|++ -||+||||+|..++..+...-..+..++
T Consensus 22 ~~~~~~r~~~~~---~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSNK---NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHHH---CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCC---CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 445555555432 34666665 8999999999999987765544445443
No 373
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.16 E-value=0.52 Score=58.96 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHhhh-hcCCCeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 395 IEKIKSLLC-LELGDVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 395 l~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...|..+|. .+-...+++.|+|++|+||||||.+++......-..++|++
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 344555553 22223568999999999999999999987765556677776
No 374
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.14 E-value=0.63 Score=47.46 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCeEEEEEEcc-CCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 407 GDVRIVGIWGM-GGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 407 ~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999985 899999999999988776555555554
No 375
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.14 E-value=0.41 Score=50.62 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.1
Q ss_pred CCeEEEEEEc-cCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 407 GDVRIVGIWG-MGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 407 ~~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
...++|+|+| -||+||||+|..++..+...-..+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3467888875 9999999999999987766544555554
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.13 E-value=0.25 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.+|+|+.|.|||||+.+++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999987654
No 377
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.13 E-value=0.32 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998864
No 378
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.11 E-value=0.28 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.--|+|+|.+|+|||||...+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34568999999999999988875
No 379
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.06 E-value=0.45 Score=49.78 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhccc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGD 436 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 436 (731)
+..+|+|+|.+|+|||||...+.......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 36799999999999999999998765443
No 380
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.04 E-value=0.3 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
...|+|.|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999875
No 381
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.02 E-value=0.4 Score=52.39 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=24.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccC
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDF 437 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 437 (731)
..+|.++|++|+||||+++.++......|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 45789999999999999999998765444
No 382
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.92 E-value=0.15 Score=57.54 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=33.5
Q ss_pred CCcccchhhHHHHHHhhhhcCCC---------eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 386 SGFVGLNSRIEKIKSLLCLELGD---------VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 386 ~~fvGR~~el~~L~~~L~~~~~~---------~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
+.++|.+...+.+.-.|..+... ..-|.|+|++|+|||+||+.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45899988766665555433100 0147899999999999999987654
No 383
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.82 E-value=0.33 Score=45.13 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
....|+|+|.+|+|||||...+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999988764
No 384
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.75 E-value=0.3 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988754
No 385
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.73 E-value=0.26 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEccCCchhhHHHHHHHHHh
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 386
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.64 E-value=0.23 Score=49.72 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHh
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+++|.|+.|+|||||.+.++--.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999987543
No 387
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.63 E-value=0.53 Score=46.91 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=25.8
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
++.+.+.........|+|+|.+|+|||||...+...
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 343444333334567899999999999999998753
No 388
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.61 E-value=0.21 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|+|+.|.|||||++.++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999998864
No 389
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.58 E-value=0.26 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 34899999999999999999875
No 390
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.56 E-value=0.94 Score=53.57 Aligned_cols=23 Identities=22% Similarity=-0.088 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
...+++|+|+.|.|||||.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999884
No 391
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.51 E-value=0.75 Score=46.12 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=35.1
Q ss_pred hHHHHHHhhhh--cCCCeEEEEEEcc-CCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 394 RIEKIKSLLCL--ELGDVRIVGIWGM-GGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 394 el~~L~~~L~~--~~~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+..|...|.. .....++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44444444432 2234678999875 899999999999988776555566665
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.51 E-value=0.22 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.089 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...+|+|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999988654
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.48 E-value=0.28 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 394
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.42 E-value=0.37 Score=44.09 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.--|+|.|.+|+|||||...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 34688999999999999998864
No 395
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.13 E-value=0.31 Score=44.05 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEEEccCCchhhHHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988753
No 396
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=87.08 E-value=0.36 Score=46.95 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 397
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=87.06 E-value=0.74 Score=48.19 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=28.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc--ccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS--GDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 444 (731)
..++...|-||+||||+|..++..+. ..-..+..+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45677789999999999999998887 5555555554
No 398
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.05 E-value=0.7 Score=47.82 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=28.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567778899999999999999988876655555554
No 399
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.03 E-value=0.39 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...+|.|+|++|+||||+|+.+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998874
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.02 E-value=0.83 Score=48.90 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=46.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEeecccccccccHHHHHHHHHHhhhcCCcccC-CCCcHHHHHHHHc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVISQVMGENIKIG-TPTITPNIKKRLQ 487 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~~~~~l~~~L~ 487 (731)
..+++|+|+.|+|||||.+.+...+...-..+.+..+.-+... .. ......... .......++..|+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~-~~-----------~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI-DG-----------IGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-SS-----------SEEEECBGGGTBCHHHHHHHHGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc-CC-----------cceEEEccccCcCHHHHHHHHhc
Confidence 5689999999999999999998877544222333321111000 00 000000000 1124566777787
Q ss_pred CCCcEEEEeccCCc
Q 004772 488 QRKVLIVLHDVDDN 501 (731)
Q Consensus 488 ~k~~LLVLDdv~~~ 501 (731)
..+-++++.++.+.
T Consensus 235 q~pd~i~vgEiRd~ 248 (418)
T 1p9r_A 235 QDPDVVMVGEIRDL 248 (418)
T ss_dssp GCCSEEEESCCCSH
T ss_pred cCCCeEEEcCcCCH
Confidence 77778888887664
No 401
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.01 E-value=0.52 Score=45.49 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=25.3
Q ss_pred EEEEEEc-cCCchhhHHHHHHHHHhcccCcceEEE
Q 004772 410 RIVGIWG-MGGIGKTTIASVIFHQISGDFQGKCFM 443 (731)
Q Consensus 410 ~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~~~ 443 (731)
++|.|+| -||+||||+|..++..+......+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4677777 589999999999998776554344443
No 402
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.00 E-value=0.15 Score=51.04 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
....|+|.|..|+||||+|+.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999887665
No 403
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=86.97 E-value=0.61 Score=46.70 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHH
Q 004772 397 KIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 397 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
++...+.........|+|+|.+|+|||||...++..
T Consensus 27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 333333333334567889999999999999998753
No 404
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.95 E-value=0.34 Score=43.81 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.0
Q ss_pred EEEEccCCchhhHHHHHHHHH
Q 004772 412 VGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~ 432 (731)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 405
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.93 E-value=0.31 Score=44.42 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEEccCCchhhHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~ 430 (731)
-|+|+|.+|+|||||...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999885
No 406
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.92 E-value=0.3 Score=51.01 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||.+.++-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999874
No 407
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.90 E-value=0.32 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
...++|+|+.|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987654
No 408
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.89 E-value=0.32 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998754
No 409
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.89 E-value=0.33 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEEEccCCchhhHHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998763
No 410
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.80 E-value=0.33 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.4
Q ss_pred EEEEEccCCchhhHHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 411
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.79 E-value=0.32 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 412
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.78 E-value=0.31 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998753
No 413
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.77 E-value=0.27 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..+++|.|+.|+|||||.+.++--
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999998754
No 414
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.76 E-value=0.3 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 34899999999999999999874
No 415
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.74 E-value=0.47 Score=42.83 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998763
No 416
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.69 E-value=0.32 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 34899999999999999999874
No 417
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.66 E-value=0.32 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999875
No 418
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.65 E-value=0.34 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 419
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.62 E-value=0.5 Score=44.93 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
...+|+|+|++|+||+++|..+...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 46799999999999999999887655
No 420
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.62 E-value=0.3 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.8
Q ss_pred EEEEEccCCchhhHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~ 430 (731)
-|+|+|.+|+|||||...+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 46899999999999998875
No 421
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.58 E-value=0.33 Score=50.90 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHHcCCCcEEEEeccCCch-----hHhhhhcCCC--CCCCEEEEEeCChhhhhh
Q 004772 481 NIKKRLQQRKVLIVLHDVDDNS-----KSFAVCLDLF--SPGSRIIITTRDKRLLYK 530 (731)
Q Consensus 481 ~l~~~L~~k~~LLVLDdv~~~~-----~~l~~~~~~~--~~gs~IIiTTR~~~v~~~ 530 (731)
.+.+.|..++=+|++|.--... ..+...+... ..|..||++|.+...+..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 4667777889999999874322 2222222222 237788999988766544
No 422
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.57 E-value=0.33 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 34899999999999999999874
No 423
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.50 E-value=1.1 Score=47.55 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCeEEEEEE-ccCCchhhHHHHHHHHHhc
Q 004772 407 GDVRIVGIW-GMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 407 ~~~~vv~I~-G~gGiGKTtLA~~~~~~~~ 434 (731)
...++|+|+ |-||+||||+|..++..+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 346777776 7899999999999998776
No 424
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.49 E-value=0.37 Score=44.27 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
...|+|+|.+|+|||||...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 55788999999999999999875
No 425
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.48 E-value=0.37 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|.|+|.+|+|||||...+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 426
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.44 E-value=0.35 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999888763
No 427
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.40 E-value=0.34 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 34899999999999999999874
No 428
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.39 E-value=0.35 Score=43.93 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999999875
No 429
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.36 E-value=0.36 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446789999999999999998753
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=86.32 E-value=0.28 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999874
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.28 E-value=0.42 Score=48.86 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHH
Q 004772 395 IEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 395 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
+++|.+.+. ..+++|.|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 455555553 2478999999999999999987
No 432
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.25 E-value=0.37 Score=43.73 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998863
No 433
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.17 E-value=0.35 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.+++|.|+.|+|||||.+.++-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4899999999999999999874
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.10 E-value=0.33 Score=44.76 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|.|.+|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 435
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.09 E-value=0.35 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999874
No 436
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.04 E-value=0.49 Score=43.53 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998763
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.04 E-value=0.38 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999998764
No 438
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=85.90 E-value=0.64 Score=48.93 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=28.6
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 57888999999999999999988776655566665
No 439
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.87 E-value=0.51 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 556889999999999999998864
No 440
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.86 E-value=0.38 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998763
No 441
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.84 E-value=0.52 Score=46.79 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=27.5
Q ss_pred eEEEEEE-ccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIW-GMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
.++|+|+ +-||+||||+|..++..+...-..++.+.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5678887 68999999999999988766544455544
No 442
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.84 E-value=0.4 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 443
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.73 E-value=0.4 Score=44.94 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
...|+|+|.+|+|||||...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 55788999999999999999874
No 444
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.69 E-value=0.7 Score=52.07 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..+++.+.|.||+||||+|..++......-..+..++
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3568889999999999999999987766544555554
No 445
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.64 E-value=0.37 Score=44.81 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred EEEEEccCCchhhHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~ 431 (731)
-|+|.|.+|+|||||...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999998875
No 446
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.63 E-value=0.41 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998863
No 447
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.60 E-value=0.45 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCchhhHHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
...-|+|+|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 355678999999999999998864
No 448
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=85.56 E-value=0.73 Score=44.83 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=26.4
Q ss_pred EEEEEE-ccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIW-GMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++|+|+ +-||+||||+|..++..+......+..+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 567776 57899999999999988776544555554
No 449
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.53 E-value=0.42 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 450
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.45 E-value=0.73 Score=45.54 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=26.1
Q ss_pred EEEEEE-ccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIW-GMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 567775 57899999999999988776544455554
No 451
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.41 E-value=0.4 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34578999999999999999874
No 452
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=85.38 E-value=0.9 Score=49.31 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=28.9
Q ss_pred EEEEEEccCCchhhHHHH-HHHHHhcccCcceEEEeecccccccccHHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIAS-VIFHQISGDFQGKCFMKNVGEESSKMGVIHVRDEVIS 464 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 464 (731)
+.++|.|.+|+|||+||. .+++... -+..|.+..+++ .......+.+.+..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGe--R~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQ--KKSAIARIIDKLRQ 227 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESC--CHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCC--CcHHHHHHHHHHHh
Confidence 357899999999999975 4555432 333333333322 22334445555543
No 453
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.37 E-value=0.42 Score=43.82 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.4
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
--|+|+|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999875
No 454
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.34 E-value=0.43 Score=44.30 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999853
No 455
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=85.34 E-value=0.4 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998874
No 456
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.34 E-value=0.42 Score=44.31 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 457
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.30 E-value=0.43 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998763
No 458
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=85.26 E-value=1.2 Score=45.15 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred hhHHHHHHhhhh--cCCCeEEEEEEc-cCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 393 SRIEKIKSLLCL--ELGDVRIVGIWG-MGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 393 ~el~~L~~~L~~--~~~~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+.+..|...|.. .....++|.|+| -||+||||+|..++..+...-..++.+.
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344555444432 223467888876 5899999999999988876655566664
No 459
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.23 E-value=0.56 Score=42.64 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998753
No 460
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.22 E-value=0.44 Score=44.09 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.3
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
--|+|+|.+|+|||||...+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999998875
No 461
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.12 E-value=0.39 Score=44.91 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQIS 434 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 434 (731)
.--|+|+|.+|+|||||.+.+.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34578999999999999966655433
No 462
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.12 E-value=0.45 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999998853
No 463
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.09 E-value=0.34 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.2
Q ss_pred eEEEEEEccCCchhhHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
..-|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999998874
No 464
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.06 E-value=0.45 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=19.1
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
--|+|+|.+|+|||||...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999988875
No 465
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.04 E-value=0.42 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..+++|.|+.|+|||||.+.++-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34899999999999999998874
No 466
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.99 E-value=0.46 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998753
No 467
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.98 E-value=0.45 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999999885
No 468
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=84.95 E-value=1.4 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.5
Q ss_pred CeEEEEEEccCCchhhHHHHHHH
Q 004772 408 DVRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 408 ~~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
...+++|+|+.|.|||||.+.++
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 35689999999999999999876
No 469
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.94 E-value=0.45 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=20.4
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 470
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.91 E-value=0.48 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45789999999999999998864
No 471
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.87 E-value=0.38 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.0
Q ss_pred EEEEEEccCCchhhHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.-|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998863
No 472
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=84.86 E-value=0.4 Score=44.81 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.0
Q ss_pred EEEEccCCchhhHHHHHHHHH
Q 004772 412 VGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 412 v~I~G~gGiGKTtLA~~~~~~ 432 (731)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999998855
No 473
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.85 E-value=1.2 Score=50.67 Aligned_cols=37 Identities=32% Similarity=0.268 Sum_probs=24.4
Q ss_pred hhHHHHHHhhhhcCCCeEEEEEEccCCchhhHHHHHHHHHh
Q 004772 393 SRIEKIKSLLCLELGDVRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 393 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
.+.+.+...|.. ..+..|+||||.|||+.+.++...+
T Consensus 193 ~Q~~AV~~al~~----~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 193 SQKEAVLFALSQ----KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHC----SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEECCCCCCHHHHHHHHHHHH
Confidence 344555555532 2367899999999997666655443
No 474
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.84 E-value=1.1 Score=42.79 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=25.4
Q ss_pred EEEE-EccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 411 IVGI-WGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 411 vv~I-~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
+|+| .+-||+||||+|..++..+.... .++.+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 4555 57899999999999998887665 555554
No 475
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.78 E-value=0.43 Score=44.53 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998754
No 476
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.78 E-value=0.48 Score=43.62 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446789999999999999998763
No 477
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.77 E-value=0.55 Score=42.40 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.0
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHh
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQI 433 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~ 433 (731)
..+.+|+|+.|.|||||..+++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999886543
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.76 E-value=0.71 Score=51.19 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
-.+++|.|++|+|||||+..++......-..++++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 458999999999999999999976554333334443
No 479
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.62 E-value=0.48 Score=44.49 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|+|.+|+|||||...+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 480
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=84.57 E-value=0.82 Score=45.51 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=27.4
Q ss_pred CeEEEEEE-ccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 408 DVRIVGIW-GMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 408 ~~~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++|+|+ |-||+||||+|..++..+. .-..+..+.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 35777775 6899999999999999888 544455554
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.57 E-value=0.48 Score=45.09 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998763
No 482
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.56 E-value=0.47 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.7
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998864
No 483
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=84.50 E-value=0.99 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.5
Q ss_pred EEEEEccCCchhhHHHHHHHHHhcc
Q 004772 411 IVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
.++|.|.+|+|||+|+..+++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4689999999999999998887654
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.48 E-value=0.49 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998753
No 485
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.46 E-value=0.39 Score=50.53 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=25.8
Q ss_pred EEEEEEccCCchhhHHHHHHHHHhcccCcceEEEe
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQISGDFQGKCFMK 444 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 444 (731)
..++|+|+.|.|||||++.++..+.. ..+.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 47899999999999999999875543 23445554
No 486
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.46 E-value=0.32 Score=46.37 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.4
Q ss_pred eEEEEEEccCCchhhHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
...|+|+|.+|+|||||...+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998775
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.42 E-value=0.49 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999764
No 488
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.37 E-value=0.6 Score=45.09 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=24.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHHhcc
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQISG 435 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 435 (731)
...|.|.|+.|+||||++..+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 458899999999999999999998865
No 489
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.32 E-value=0.49 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456789999999999999998864
No 490
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.32 E-value=0.51 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEEccCCchhhHHHHHHHHH
Q 004772 410 RIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 410 ~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
--|+|+|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998753
No 491
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=84.29 E-value=0.51 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.-.|+|+|..|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999998765
No 492
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=84.28 E-value=0.78 Score=54.94 Aligned_cols=22 Identities=23% Similarity=0.012 Sum_probs=19.9
Q ss_pred eEEEEEEccCCchhhHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
..+++|+|+.|.|||||.+.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999883
No 493
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=84.17 E-value=0.57 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.3
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999999753
No 494
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.14 E-value=0.51 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.2
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999998864
No 495
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.13 E-value=0.52 Score=43.96 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.6
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999998764
No 496
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.08 E-value=0.53 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.5
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 497
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.05 E-value=0.67 Score=43.83 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFHQ 432 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~~ 432 (731)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 498
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.03 E-value=0.53 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.9
Q ss_pred eEEEEEEccCCchhhHHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~~ 431 (731)
.--|+|+|.+|+|||||...+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 34578999999999999999875
No 499
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=83.94 E-value=0.5 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.1
Q ss_pred eEEEEEEccCCchhhHHHHHHH
Q 004772 409 VRIVGIWGMGGIGKTTIASVIF 430 (731)
Q Consensus 409 ~~vv~I~G~gGiGKTtLA~~~~ 430 (731)
..-|+|+|.+|+|||||...+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999998876
No 500
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.93 E-value=0.44 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.3
Q ss_pred EEEEEccCCchhhHHHHHHHH
Q 004772 411 IVGIWGMGGIGKTTIASVIFH 431 (731)
Q Consensus 411 vv~I~G~gGiGKTtLA~~~~~ 431 (731)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999763
Done!