BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004773
(731 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 74/85 (87%)
Query: 630 QEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPASGWKPVPLVDIIEGNAVKRSYQKAL 689
+E + ID +IRKWS+GK GNIRSLLSTLQYILW SGWKPVPL+D+IEGNAV++SYQ+AL
Sbjct: 6 EEIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRAL 65
Query: 690 LCLHPDKLQQKGATCQQTYIAEKVL 714
L LHPDKLQQKGA+ Q Y+AEKV
Sbjct: 66 LILHPDKLQQKGASANQKYMAEKVF 90
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 637 VQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKALLCLHPD 695
++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+KA+L +HPD
Sbjct: 89 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPD 148
Query: 696 K 696
K
Sbjct: 149 K 149
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 630 QEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKA 688
+E ++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+KA
Sbjct: 14 KEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKA 73
Query: 689 LLCLHPDK 696
+L +HPDK
Sbjct: 74 VLVVHPDK 81
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
Query: 628 DPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQ 686
DP++ ++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+
Sbjct: 2 DPEK-----LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYR 56
Query: 687 KALLCLHPDK 696
KA+L +HP K
Sbjct: 57 KAVLVVHPCK 66
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
Query: 628 DPQEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQ 686
DP++ ++I +W GKE NIR+LLST+ +LW + WKPV + D++ VK+ Y+
Sbjct: 1 DPEK-----LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYR 55
Query: 687 KALLCLHPDK 696
KA+L +HP K
Sbjct: 56 KAVLVVHPCK 65
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 630 QEFQAIDVQIRKWSNGKEGNIRSLLSTLQYILWPA-SGWKPVPLVDIIEGNAVKRSYQKA 688
+E ++I +W GKE NIR+LLST +LW + WKPV D++ VK+ Y+KA
Sbjct: 1 KEMDPEKLKILEWIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKA 60
Query: 689 LLCLHPDK 696
+L +HPDK
Sbjct: 61 VLVVHPDK 68
>pdb|2QQ6|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme-Like Protein From Rubrobacter
Xylanophilus Dsm 9941
pdb|2QQ6|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme-Like Protein From Rubrobacter
Xylanophilus Dsm 9941
Length = 410
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 625 LGNDPQEFQAIDVQIRKW---SNGKEGNIRSLLSTLQYILWPASG-WKPVPLVDIIEGNA 680
LG DP++ + + + R+W + G+ G + + LS ++ LW +G + VP+ ++ G A
Sbjct: 59 LGEDPRDVERLYEKXRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLL-GGA 117
Query: 681 VKRSYQKALLC 691
+R + C
Sbjct: 118 FRRRVRLYADC 128
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 498 GLSKSKINVDPQSKSSRWKGTGNSK---PEKDANFSKIAPD-----GKIHKSTEHEKKSF 549
G + IN+ S W+GT N+ P + FS + GKI S E S
Sbjct: 420 GKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSK 479
Query: 550 PDTPIMVNGNLPHSE 564
PD I+V G P++E
Sbjct: 480 PDVAIVVIGEEPYAE 494
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 498 GLSKSKINVDPQSKSSRWKGTGNSK---PEKDANFSKIAPD-----GKIHKSTEHEKKSF 549
G + IN+ S W+GT N+ P + FS + GKI S E S
Sbjct: 420 GKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSK 479
Query: 550 PDTPIMVNGNLPHSE 564
PD I+V G P++E
Sbjct: 480 PDVAIVVIGEEPYAE 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.128 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,362,366
Number of Sequences: 62578
Number of extensions: 952579
Number of successful extensions: 1717
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1706
Number of HSP's gapped (non-prelim): 14
length of query: 731
length of database: 14,973,337
effective HSP length: 106
effective length of query: 625
effective length of database: 8,340,069
effective search space: 5212543125
effective search space used: 5212543125
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)