Query 004774
Match_columns 731
No_of_seqs 392 out of 2750
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 12:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 2E-128 5E-133 1092.8 65.1 718 8-727 5-759 (868)
2 PLN02270 phospholipase D alpha 100.0 8E-116 2E-120 992.1 59.9 651 13-724 4-697 (808)
3 PLN02352 phospholipase D epsil 100.0 2E-110 4E-115 947.5 56.7 576 80-727 36-650 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 1.1E-98 2E-103 846.1 47.4 653 8-727 67-744 (887)
5 PLN02866 phospholipase D 100.0 4E-76 8.7E-81 678.2 40.6 448 204-727 322-910 (1068)
6 PRK12452 cardiolipin synthetas 100.0 3.6E-58 7.7E-63 520.0 30.9 337 203-728 131-467 (509)
7 PRK01642 cls cardiolipin synth 100.0 7.5E-57 1.6E-61 508.7 31.5 334 203-728 107-441 (483)
8 PRK11263 cardiolipin synthase 100.0 2.7E-55 5.8E-60 483.2 30.3 327 207-728 3-329 (411)
9 COG1502 Cls Phosphatidylserine 100.0 1.2E-42 2.5E-47 391.4 29.6 338 209-728 57-396 (438)
10 PRK09428 pssA phosphatidylseri 100.0 7.1E-42 1.5E-46 379.1 28.6 351 209-725 22-394 (451)
11 PHA02820 phospholipase-D-like 100.0 3.6E-41 7.7E-46 372.7 26.5 327 242-724 26-360 (424)
12 PHA03003 palmytilated EEV memb 100.0 1E-39 2.3E-44 356.9 25.3 320 242-728 31-350 (369)
13 PRK05443 polyphosphate kinase; 99.9 4.1E-23 8.8E-28 238.8 24.6 268 242-728 348-635 (691)
14 TIGR03705 poly_P_kin polyphosp 99.9 7.5E-23 1.6E-27 235.2 20.0 265 242-728 339-626 (672)
15 cd04015 C2_plant_PLD C2 domain 99.9 1.8E-22 3.8E-27 195.3 16.7 157 12-180 2-158 (158)
16 cd04016 C2_Tollip C2 domain pr 99.8 1.5E-19 3.3E-24 166.4 14.1 117 17-179 2-121 (121)
17 cd04013 C2_SynGAP_like C2 doma 99.8 5.7E-18 1.2E-22 160.3 15.9 128 12-186 6-145 (146)
18 cd08379 C2D_MCTP_PRT_plant C2 99.8 4.4E-18 9.5E-23 157.7 14.6 114 19-175 2-125 (126)
19 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.9E-18 1.3E-22 156.5 15.4 120 18-181 1-121 (121)
20 cd08682 C2_Rab11-FIP_classI C2 99.8 3.9E-18 8.4E-23 158.9 13.5 117 19-178 1-126 (126)
21 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.5E-17 7.6E-22 152.5 15.6 121 16-182 3-125 (126)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.2E-17 4.8E-22 152.6 13.9 99 80-179 22-121 (121)
23 cd04022 C2A_MCTP_PRT_plant C2 99.7 5.9E-17 1.3E-21 151.1 13.5 119 18-180 1-126 (127)
24 cd08681 C2_fungal_Inn1p-like C 99.7 3.8E-17 8.2E-22 150.3 11.8 116 17-179 1-118 (118)
25 cd08678 C2_C21orf25-like C2 do 99.7 1.3E-16 2.9E-21 148.6 14.9 105 80-184 18-124 (126)
26 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.2E-16 2.6E-21 153.2 14.1 122 18-182 1-134 (150)
27 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.6E-16 3.5E-21 146.9 13.1 98 80-180 17-120 (121)
28 cd08376 C2B_MCTP_PRT C2 domain 99.7 8.3E-16 1.8E-20 140.9 15.6 112 19-180 2-115 (116)
29 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.8E-16 1E-20 143.8 14.1 117 19-178 2-120 (121)
30 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.5E-16 7.6E-21 147.0 13.4 120 18-180 1-133 (133)
31 cd08377 C2C_MCTP_PRT C2 domain 99.7 7E-16 1.5E-20 141.9 15.0 117 17-179 1-118 (119)
32 PHA02820 phospholipase-D-like 99.7 2.3E-16 5.1E-21 175.2 14.0 146 520-723 4-150 (424)
33 cd08677 C2A_Synaptotagmin-13 C 99.7 2.2E-16 4.8E-21 143.5 10.4 103 12-159 9-118 (118)
34 cd08381 C2B_PI3K_class_II C2 d 99.7 3.6E-16 7.8E-21 144.8 11.9 105 12-159 8-121 (122)
35 cd04014 C2_PKC_epsilon C2 doma 99.7 1.1E-15 2.3E-20 143.6 15.0 127 15-182 2-131 (132)
36 cd04044 C2A_Tricalbin-like C2 99.7 6E-16 1.3E-20 143.4 12.9 121 17-181 2-124 (124)
37 cd04024 C2A_Synaptotagmin-like 99.7 8.8E-16 1.9E-20 143.1 13.8 120 17-179 1-128 (128)
38 cd04036 C2_cPLA2 C2 domain pre 99.7 1.1E-15 2.3E-20 141.0 14.0 113 19-179 2-117 (119)
39 cd04028 C2B_RIM1alpha C2 domai 99.7 1.1E-15 2.4E-20 145.1 13.1 108 13-162 25-139 (146)
40 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.6E-15 3.4E-20 139.9 13.6 120 17-179 1-121 (121)
41 cd08685 C2_RGS-like C2 domain 99.6 5.1E-16 1.1E-20 143.0 10.2 106 11-159 6-119 (119)
42 cd08395 C2C_Munc13 C2 domain t 99.6 9.8E-16 2.1E-20 140.8 11.6 100 18-160 1-111 (120)
43 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 2.2E-15 4.7E-20 139.7 13.6 118 18-178 1-123 (123)
44 cd08375 C2_Intersectin C2 doma 99.6 4.7E-15 1E-19 139.9 14.7 115 16-179 14-135 (136)
45 cd08373 C2A_Ferlin C2 domain f 99.6 5.7E-15 1.2E-19 137.7 14.6 103 80-185 15-121 (127)
46 cd04046 C2_Calpain C2 domain p 99.6 1.3E-14 2.7E-19 135.2 15.8 122 16-182 2-124 (126)
47 cd08385 C2A_Synaptotagmin-1-5- 99.6 3.6E-15 7.9E-20 138.4 11.9 103 15-159 14-122 (124)
48 cd08688 C2_KIAA0528-like C2 do 99.6 2.3E-15 4.9E-20 136.8 10.2 100 19-161 1-109 (110)
49 KOG1030 Predicted Ca2+-depende 99.6 1.8E-15 3.8E-20 142.8 9.7 95 15-152 4-99 (168)
50 cd08387 C2A_Synaptotagmin-8 C2 99.6 3.7E-15 8E-20 138.4 11.1 103 15-159 14-122 (124)
51 cd08393 C2A_SLP-1_2 C2 domain 99.6 2.8E-15 6E-20 139.5 10.1 102 16-159 14-124 (125)
52 cd08392 C2A_SLP-3 C2 domain fi 99.6 3.3E-15 7.2E-20 139.4 10.6 103 15-159 13-127 (128)
53 cd04050 C2B_Synaptotagmin-like 99.6 6.7E-15 1.4E-19 132.6 12.1 97 19-160 2-101 (105)
54 cd00138 PLDc Phospholipase D. 99.6 1.1E-14 2.3E-19 143.4 14.6 145 241-459 20-169 (176)
55 cd04029 C2A_SLP-4_5 C2 domain 99.6 4.6E-15 9.9E-20 138.0 11.2 103 15-159 13-124 (125)
56 cd08394 C2A_Munc13 C2 domain f 99.6 7.5E-15 1.6E-19 134.8 12.0 97 17-160 2-100 (127)
57 cd08382 C2_Smurf-like C2 domai 99.6 9.4E-15 2E-19 135.5 12.7 117 18-177 1-122 (123)
58 cd08680 C2_Kibra C2 domain fou 99.6 4.8E-15 1E-19 137.3 10.1 103 15-159 12-124 (124)
59 cd04045 C2C_Tricalbin-like C2 99.6 1E-14 2.3E-19 134.6 11.9 104 17-163 1-105 (120)
60 cd04051 C2_SRC2_like C2 domain 99.6 7.5E-15 1.6E-19 136.4 10.9 113 18-175 1-125 (125)
61 cd04027 C2B_Munc13 C2 domain s 99.6 1.8E-14 3.9E-19 134.4 13.2 114 18-177 2-127 (127)
62 cd04010 C2B_RasA3 C2 domain se 99.6 1.1E-14 2.4E-19 139.0 11.8 83 80-162 19-123 (148)
63 cd04017 C2D_Ferlin C2 domain f 99.6 2.4E-14 5.3E-19 135.0 14.0 118 18-182 2-134 (135)
64 cd08690 C2_Freud-1 C2 domain f 99.6 3.1E-14 6.8E-19 136.2 14.3 99 80-181 25-138 (155)
65 cd04043 C2_Munc13_fungal C2 do 99.6 4.5E-14 9.8E-19 131.4 15.0 115 18-182 2-123 (126)
66 cd04030 C2C_KIAA1228 C2 domain 99.6 1.6E-14 3.6E-19 134.4 11.5 101 17-159 16-126 (127)
67 cd04031 C2A_RIM1alpha C2 domai 99.6 2E-14 4.4E-19 133.4 11.4 101 16-159 15-124 (125)
68 cd08383 C2A_RasGAP C2 domain ( 99.6 5E-14 1.1E-18 129.1 13.7 96 80-179 18-117 (117)
69 cd08521 C2A_SLP C2 domain firs 99.6 1.9E-14 4.2E-19 133.1 10.7 103 15-159 12-123 (123)
70 cd04041 C2A_fungal C2 domain f 99.6 1.6E-14 3.6E-19 131.4 9.7 98 17-159 1-106 (111)
71 cd08407 C2B_Synaptotagmin-13 C 99.5 6.2E-15 1.3E-19 138.9 6.5 111 14-166 12-130 (138)
72 cd04040 C2D_Tricalbin-like C2 99.5 6.2E-14 1.3E-18 128.2 12.9 111 19-174 1-113 (115)
73 PRK13912 nuclease NucT; Provis 99.5 7.6E-15 1.7E-19 144.8 6.5 130 560-728 32-161 (177)
74 cd08388 C2A_Synaptotagmin-4-11 99.5 5.9E-14 1.3E-18 131.1 12.1 102 16-159 15-126 (128)
75 cd04052 C2B_Tricalbin-like C2 99.5 5.9E-14 1.3E-18 127.7 11.7 101 76-182 9-111 (111)
76 cd08389 C2A_Synaptotagmin-14_1 99.5 5.4E-14 1.2E-18 130.6 11.7 101 16-159 15-122 (124)
77 cd04039 C2_PSD C2 domain prese 99.5 4.8E-14 1E-18 127.6 10.7 96 17-151 1-99 (108)
78 cd08386 C2A_Synaptotagmin-7 C2 99.5 6.1E-14 1.3E-18 130.3 11.7 102 16-159 15-123 (125)
79 cd08406 C2B_Synaptotagmin-12 C 99.5 1.1E-14 2.4E-19 137.1 6.7 108 15-166 13-128 (136)
80 cd00138 PLDc Phospholipase D. 99.5 2.9E-14 6.4E-19 140.3 10.0 130 559-727 19-155 (176)
81 cd04018 C2C_Ferlin C2 domain t 99.5 6.9E-14 1.5E-18 133.8 11.6 116 18-162 1-126 (151)
82 cd04049 C2_putative_Elicitor-r 99.5 7.6E-14 1.6E-18 129.5 11.2 100 17-159 1-106 (124)
83 cd04011 C2B_Ferlin C2 domain s 99.5 9.7E-14 2.1E-18 126.3 11.3 81 80-161 21-110 (111)
84 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.1E-14 4.5E-19 135.0 6.8 108 15-166 11-126 (133)
85 cd08390 C2A_Synaptotagmin-15-1 99.5 1.1E-13 2.4E-18 128.2 11.5 103 15-159 12-121 (123)
86 cd08692 C2B_Tac2-N C2 domain s 99.5 3E-14 6.5E-19 132.7 7.4 114 10-166 7-128 (135)
87 PHA03003 palmytilated EEV memb 99.5 1.1E-13 2.3E-18 152.0 13.1 142 243-459 217-363 (369)
88 PRK13912 nuclease NucT; Provis 99.5 3.7E-13 8E-18 132.8 15.6 140 242-459 33-174 (177)
89 cd08404 C2B_Synaptotagmin-4 C2 99.5 3.9E-14 8.4E-19 133.8 7.7 108 15-166 13-128 (136)
90 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 9.8E-14 2.1E-18 134.8 10.1 103 15-159 25-136 (162)
91 cd08676 C2A_Munc13-like C2 dom 99.5 1.4E-13 3.1E-18 131.8 10.5 100 14-159 25-153 (153)
92 cd04026 C2_PKC_alpha_gamma C2 99.5 2.3E-13 5E-18 127.5 11.5 108 12-162 8-122 (131)
93 KOG1028 Ca2+-dependent phospho 99.5 2.4E-13 5.3E-18 150.9 13.3 128 14-183 164-297 (421)
94 cd08675 C2B_RasGAP C2 domain s 99.5 2.1E-13 4.5E-18 128.9 10.8 102 19-164 1-122 (137)
95 cd08405 C2B_Synaptotagmin-7 C2 99.5 6.3E-14 1.4E-18 132.3 7.2 108 15-166 13-128 (136)
96 cd08402 C2B_Synaptotagmin-1 C2 99.5 3.3E-14 7.2E-19 134.2 5.2 113 10-166 8-128 (136)
97 PRK12452 cardiolipin synthetas 99.5 1.4E-13 3E-18 156.9 10.7 140 241-461 343-482 (509)
98 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.1E-14 1.3E-18 132.1 5.9 109 14-166 11-127 (134)
99 cd08409 C2B_Synaptotagmin-15 C 99.5 7.2E-14 1.6E-18 132.1 6.2 108 15-165 13-128 (137)
100 cd04038 C2_ArfGAP C2 domain pr 99.5 4.2E-13 9.1E-18 127.7 11.4 91 17-151 2-93 (145)
101 cd00276 C2B_Synaptotagmin C2 d 99.4 1.2E-13 2.5E-18 129.8 6.9 106 16-165 13-126 (134)
102 cd08408 C2B_Synaptotagmin-14_1 99.4 1E-13 2.3E-18 131.0 6.5 108 15-165 13-129 (138)
103 cd08410 C2B_Synaptotagmin-17 C 99.4 1E-13 2.3E-18 130.7 6.5 109 15-166 12-128 (135)
104 cd00275 C2_PLC_like C2 domain 99.4 1.3E-12 2.9E-17 121.6 13.7 116 18-179 3-127 (128)
105 PF13091 PLDc_2: PLD-like doma 99.4 1.8E-13 3.9E-18 126.9 7.7 115 566-727 1-115 (126)
106 cd04032 C2_Perforin C2 domain 99.4 4.9E-13 1.1E-17 124.2 10.5 91 14-148 25-118 (127)
107 cd04021 C2_E3_ubiquitin_ligase 99.4 1.4E-12 2.9E-17 121.4 13.4 97 80-177 22-124 (125)
108 cd08691 C2_NEDL1-like C2 domai 99.4 2.4E-12 5.3E-17 121.2 14.1 114 19-177 3-136 (137)
109 KOG0696 Serine/threonine prote 99.4 8.8E-14 1.9E-18 146.4 4.7 107 14-163 177-290 (683)
110 cd04009 C2B_Munc13-like C2 dom 99.4 8.6E-13 1.9E-17 124.1 10.5 90 17-148 16-117 (133)
111 cd08686 C2_ABR C2 domain in th 99.4 3.9E-12 8.4E-17 115.5 12.6 90 80-179 15-118 (118)
112 cd04048 C2A_Copine C2 domain f 99.4 3.5E-12 7.5E-17 117.7 11.1 80 80-159 21-112 (120)
113 cd04035 C2A_Rabphilin_Doc2 C2 99.4 5.1E-12 1.1E-16 117.0 11.6 102 15-158 13-122 (123)
114 cd04037 C2E_Ferlin C2 domain f 99.4 3.1E-12 6.8E-17 118.8 10.0 116 19-181 2-120 (124)
115 PLN03200 cellulose synthase-in 99.4 2.5E-12 5.4E-17 161.1 12.1 122 12-181 1975-2101(2102)
116 KOG2059 Ras GTPase-activating 99.3 1.2E-11 2.6E-16 137.6 10.0 129 16-187 4-132 (800)
117 KOG3603 Predicted phospholipas 99.2 3.3E-09 7.1E-14 113.4 26.0 332 243-724 73-418 (456)
118 PF13091 PLDc_2: PLD-like doma 99.2 1.2E-10 2.7E-15 107.8 11.7 124 247-456 1-126 (126)
119 PRK05443 polyphosphate kinase; 99.2 2.9E-11 6.2E-16 140.9 9.0 120 564-728 351-482 (691)
120 PRK01642 cls cardiolipin synth 99.2 1.1E-10 2.5E-15 132.8 12.1 146 234-461 310-456 (483)
121 PRK11263 cardiolipin synthase 99.2 8.9E-11 1.9E-15 130.3 10.9 125 560-725 17-154 (411)
122 cd04047 C2B_Copine C2 domain s 99.2 1.3E-10 2.8E-15 105.4 9.9 69 80-149 21-100 (110)
123 PF00168 C2: C2 domain; Inter 99.2 1E-10 2.3E-15 99.8 8.4 81 19-141 1-85 (85)
124 cd00030 C2 C2 domain. The C2 d 99.1 7.1E-10 1.5E-14 96.5 10.1 80 80-159 20-102 (102)
125 smart00239 C2 Protein kinase C 99.0 1.2E-09 2.5E-14 95.7 9.8 73 80-152 21-97 (101)
126 PLN02223 phosphoinositide phos 99.0 2.3E-09 5.1E-14 119.7 14.2 96 80-179 435-536 (537)
127 KOG1011 Neurotransmitter relea 99.0 4.1E-10 8.9E-15 123.4 8.0 122 15-182 293-426 (1283)
128 PLN02952 phosphoinositide phos 99.0 5.2E-09 1.1E-13 119.3 14.2 96 80-179 497-598 (599)
129 KOG1028 Ca2+-dependent phospho 99.0 6.5E-10 1.4E-14 123.7 6.2 111 12-166 293-411 (421)
130 KOG0169 Phosphoinositide-speci 98.9 4.5E-09 9.7E-14 119.5 11.5 98 80-181 641-745 (746)
131 COG5038 Ca2+-dependent lipid-b 98.9 5.6E-09 1.2E-13 122.8 11.8 129 15-187 434-564 (1227)
132 cd08374 C2F_Ferlin C2 domain s 98.9 5.6E-09 1.2E-13 97.4 9.6 72 80-151 25-125 (133)
133 PLN02230 phosphoinositide phos 98.9 9.9E-09 2.2E-13 116.8 13.5 96 80-179 496-597 (598)
134 COG5038 Ca2+-dependent lipid-b 98.9 3.8E-09 8.2E-14 124.2 9.7 123 16-182 1039-1163(1227)
135 PLN02222 phosphoinositide phos 98.8 3.1E-08 6.7E-13 112.7 14.1 96 80-179 479-580 (581)
136 KOG1031 Predicted Ca2+-depende 98.8 1.5E-08 3.3E-13 110.2 10.8 131 15-190 1-146 (1169)
137 PLN02228 Phosphoinositide phos 98.8 6.4E-08 1.4E-12 109.9 13.9 99 80-182 458-563 (567)
138 cd08689 C2_fungal_Pkc1p C2 dom 98.8 3.9E-08 8.5E-13 86.5 8.8 65 80-148 23-87 (109)
139 KOG3603 Predicted phospholipas 98.7 5E-08 1.1E-12 104.4 11.4 172 227-461 265-441 (456)
140 PRK09428 pssA phosphatidylseri 98.7 8.6E-08 1.9E-12 107.5 11.2 135 560-727 34-180 (451)
141 PF00614 PLDc: Phospholipase D 98.7 5.5E-09 1.2E-13 69.7 0.7 26 363-396 2-27 (28)
142 KOG1264 Phospholipase C [Lipid 98.5 7E-07 1.5E-11 101.0 10.5 101 80-184 1085-1193(1267)
143 COG1502 Cls Phosphatidylserine 98.4 1.1E-06 2.5E-11 99.2 10.8 136 245-460 273-410 (438)
144 KOG1328 Synaptic vesicle prote 98.4 1.7E-07 3.6E-12 104.9 2.5 93 14-148 944-1048(1103)
145 smart00155 PLDc Phospholipase 98.3 1.4E-07 3.1E-12 63.5 1.1 26 685-710 3-28 (28)
146 KOG1328 Synaptic vesicle prote 98.3 1.8E-07 4E-12 104.6 1.5 92 94-187 179-308 (1103)
147 KOG0905 Phosphoinositide 3-kin 98.1 2E-06 4.4E-11 100.9 4.9 108 10-159 1517-1633(1639)
148 TIGR03705 poly_P_kin polyphosp 98.0 1.6E-05 3.5E-10 92.8 8.1 119 564-727 342-472 (672)
149 cd08683 C2_C2cd3 C2 domain fou 97.9 8.4E-06 1.8E-10 74.1 4.1 80 80-159 33-143 (143)
150 KOG2059 Ras GTPase-activating 97.9 1.9E-05 4E-10 89.2 7.2 109 78-186 149-282 (800)
151 KOG3964 Phosphatidylglycerolph 97.9 0.0002 4.4E-09 76.3 13.4 129 241-401 38-173 (469)
152 PF00614 PLDc: Phospholipase D 97.7 7.2E-06 1.6E-10 54.8 0.3 25 686-710 4-28 (28)
153 PF07894 DUF1669: Protein of u 97.7 0.00047 1E-08 71.9 12.1 189 176-456 90-278 (284)
154 smart00155 PLDc Phospholipase 97.6 4.5E-05 9.8E-10 51.2 2.9 25 364-396 3-27 (28)
155 PF13918 PLDc_3: PLD-like doma 97.5 0.00057 1.2E-08 66.5 9.0 69 227-305 71-140 (177)
156 KOG1011 Neurotransmitter relea 97.4 0.00042 9E-09 77.3 8.2 80 80-159 1145-1235(1283)
157 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00012 2.7E-09 62.0 2.6 77 80-158 21-102 (103)
158 KOG2060 Rab3 effector RIM1 and 97.2 0.00042 9.1E-09 73.6 5.8 109 15-164 267-382 (405)
159 KOG1013 Synaptic vesicle prote 97.2 0.00032 6.8E-09 73.3 4.7 100 16-159 232-339 (362)
160 PLN02866 phospholipase D 97.1 0.00084 1.8E-08 80.5 7.6 117 560-706 343-466 (1068)
161 KOG3837 Uncharacterized conser 97.0 0.00051 1.1E-08 73.5 3.6 98 80-180 388-503 (523)
162 KOG1326 Membrane-associated pr 96.9 0.00055 1.2E-08 80.4 3.2 85 19-145 615-702 (1105)
163 PLN02964 phosphatidylserine de 96.7 0.0025 5.5E-08 74.2 6.4 86 79-164 67-156 (644)
164 KOG1013 Synaptic vesicle prote 96.5 0.00068 1.5E-08 70.9 0.4 126 17-184 93-233 (362)
165 COG0855 Ppk Polyphosphate kina 96.2 0.34 7.4E-06 55.6 19.1 92 242-376 352-448 (696)
166 PF07894 DUF1669: Protein of u 96.2 0.028 6.2E-07 58.8 10.0 123 560-724 133-265 (284)
167 PF12416 DUF3668: Cep120 prote 96.0 0.1 2.2E-06 56.5 13.4 104 80-184 18-136 (340)
168 PF11495 Regulator_TrmB: Archa 95.9 0.033 7E-07 57.6 9.1 50 241-307 9-58 (233)
169 KOG1265 Phospholipase C [Lipid 95.9 0.032 6.9E-07 65.2 9.5 101 14-166 700-810 (1189)
170 COG3886 Predicted HKD family n 95.9 0.15 3.2E-06 50.0 12.6 140 241-457 38-178 (198)
171 PF13090 PP_kinase_C: Polyphos 95.9 0.32 7E-06 52.3 16.3 274 242-727 18-304 (352)
172 KOG1326 Membrane-associated pr 95.5 0.003 6.5E-08 74.4 -0.7 114 15-176 204-328 (1105)
173 PF10358 NT-C2: N-terminal C2 95.1 0.59 1.3E-05 44.0 13.9 103 81-187 25-142 (143)
174 KOG1327 Copine [Signal transdu 94.9 0.036 7.8E-07 62.5 5.5 115 80-198 157-286 (529)
175 PF13918 PLDc_3: PLD-like doma 94.6 0.34 7.3E-06 47.5 10.8 63 563-633 84-146 (177)
176 PLN03008 Phospholipase D delta 93.8 0.13 2.9E-06 61.1 7.2 72 231-305 555-633 (868)
177 PLN02352 phospholipase D epsil 93.6 0.28 6.1E-06 58.1 9.4 65 560-627 186-250 (758)
178 KOG1329 Phospholipase D1 [Lipi 93.2 0.33 7.1E-06 57.8 8.9 27 367-401 703-729 (887)
179 PF15625 CC2D2AN-C2: CC2D2A N- 92.6 0.39 8.5E-06 47.0 7.4 86 63-148 20-107 (168)
180 COG3886 Predicted HKD family n 92.5 0.58 1.3E-05 45.9 8.2 119 560-723 38-159 (198)
181 PLN02270 phospholipase D alpha 92.2 0.39 8.5E-06 57.2 7.9 63 559-627 207-271 (808)
182 cd08693 C2_PI3K_class_I_beta_d 92.1 0.7 1.5E-05 45.5 8.6 51 80-130 27-86 (173)
183 PF13090 PP_kinase_C: Polyphos 92.1 0.096 2.1E-06 56.2 2.6 109 575-728 37-152 (352)
184 cd08398 C2_PI3K_class_I_alpha 91.9 0.85 1.8E-05 44.1 8.7 85 80-182 26-124 (158)
185 cd08380 C2_PI3K_like C2 domain 91.4 1.1 2.3E-05 43.3 8.9 69 80-148 28-108 (156)
186 KOG1452 Predicted Rho GTPase-a 91.3 0.4 8.7E-06 50.2 6.0 122 12-181 46-168 (442)
187 PF15627 CEP76-C2: CEP76 C2 do 90.2 2.9 6.4E-05 40.2 10.3 100 83-183 37-153 (156)
188 cd08687 C2_PKN-like C2 domain 89.8 2.1 4.6E-05 37.1 8.1 87 77-179 6-92 (98)
189 COG0855 Ppk Polyphosphate kina 88.2 0.54 1.2E-05 54.1 4.5 96 606-729 385-487 (696)
190 PF00792 PI3K_C2: Phosphoinosi 87.6 2.9 6.3E-05 39.5 8.5 68 81-148 3-86 (142)
191 PF09565 RE_NgoFVII: NgoFVII r 86.9 4.1 8.8E-05 43.5 9.9 111 570-722 5-122 (296)
192 cd08397 C2_PI3K_class_III C2 d 86.6 2.6 5.6E-05 40.9 7.6 69 79-147 29-107 (159)
193 cd04012 C2A_PI3K_class_II C2 d 86.2 4.6 9.9E-05 39.6 9.3 68 80-147 29-119 (171)
194 PF11495 Regulator_TrmB: Archa 86.2 1.2 2.7E-05 45.9 5.5 51 559-629 8-58 (233)
195 KOG4269 Rac GTPase-activating 82.8 2.7 5.9E-05 49.9 6.7 118 14-186 756-888 (1112)
196 PF11618 DUF3250: Protein of u 81.6 11 0.00024 33.9 8.9 94 83-180 2-105 (107)
197 cd08695 C2_Dock-B C2 domains f 81.5 9 0.0002 38.1 9.0 40 91-130 52-94 (189)
198 cd08694 C2_Dock-A C2 domains f 78.8 12 0.00025 37.5 8.8 54 91-144 52-113 (196)
199 PF14429 DOCK-C2: C2 domain in 77.1 8.4 0.00018 38.1 7.5 55 92-146 59-120 (184)
200 cd08399 C2_PI3K_class_I_gamma 72.8 30 0.00065 34.2 9.9 98 82-183 32-141 (178)
201 KOG0694 Serine/threonine prote 71.0 4.2 9.1E-05 47.5 3.9 96 80-184 28-125 (694)
202 PF06087 Tyr-DNA_phospho: Tyro 66.6 2.7 5.9E-05 47.7 1.3 44 683-726 345-406 (443)
203 smart00142 PI3K_C2 Phosphoinos 61.1 52 0.0011 29.0 8.2 50 80-129 32-90 (100)
204 cd05137 RasGAP_CLA2_BUD2 CLA2/ 57.7 13 0.00028 41.6 4.5 50 136-187 1-51 (395)
205 cd08679 C2_DOCK180_related C2 49.0 35 0.00077 33.5 5.6 50 96-145 56-114 (178)
206 cd08697 C2_Dock-D C2 domains f 46.4 1E+02 0.0022 30.7 8.3 40 91-130 55-97 (185)
207 PF09345 DUF1987: Domain of un 46.3 33 0.00072 30.5 4.4 64 230-307 11-84 (99)
208 cd08696 C2_Dock-C C2 domains f 44.5 48 0.001 32.8 5.7 39 92-130 54-95 (179)
209 KOG1327 Copine [Signal transdu 43.9 27 0.00058 40.1 4.3 85 91-178 40-130 (529)
210 KOG3543 Ca2+-dependent activat 43.0 1.5E+02 0.0032 34.5 9.7 93 82-179 362-458 (1218)
211 PTZ00447 apical membrane antig 41.3 2.7E+02 0.0058 30.3 10.7 97 80-181 74-174 (508)
212 KOG3964 Phosphatidylglycerolph 40.5 49 0.0011 36.5 5.3 55 561-631 39-93 (469)
213 PF06219 DUF1005: Protein of u 30.4 3.6E+02 0.0078 30.2 9.9 103 79-182 35-169 (460)
214 COG1378 Predicted transcriptio 24.2 1.3E+02 0.0027 31.4 5.2 48 241-305 119-166 (247)
215 PF14924 DUF4497: Protein of u 22.5 2.2E+02 0.0047 25.7 5.8 58 120-180 29-104 (112)
216 TIGR00230 sfsA sugar fermentat 21.5 2.5E+02 0.0054 29.0 6.6 21 285-305 193-213 (232)
217 cd02685 MIT_C MIT_C; domain fo 20.9 5.6E+02 0.012 24.5 8.2 117 565-719 10-143 (148)
218 COG1489 SfsA DNA-binding prote 20.7 3.2E+02 0.007 28.2 7.0 22 284-305 191-212 (235)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=2.2e-128 Score=1092.77 Aligned_cols=718 Identities=70% Similarity=1.165 Sum_probs=624.4
Q ss_pred CCceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEE
Q 004774 8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (731)
Q Consensus 8 ~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~ 87 (731)
-+++++++||+|+++|.+|++|++||+.+++++.++..+..|..+..+-.-....+|....+++-...+.+++||||+|.
T Consensus 5 ~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~ 84 (868)
T PLN03008 5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVV 84 (868)
T ss_pred cccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEE
Confidence 46788999999999999999999999999989999887776664322111111112211112333444677899999999
Q ss_pred ECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCC
Q 004774 88 VPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (731)
Q Consensus 88 l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~ 167 (731)
++++++.||+|++++.||+|||+|.|.++++...|+|+|||.|.+++++||++.|||+++..|+..+.|++|++..++|.
T Consensus 85 Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 85 VPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPP 164 (868)
T ss_pred ECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCC
Confidence 99888889999999999999999999999998999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEEEEeecCCCCccccccCCCCCCCCcccccCCCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHH
Q 004774 168 KPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDI 247 (731)
Q Consensus 168 ~~~g~L~lsl~y~p~~~~p~~~~gi~~~~e~~gv~~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l 247 (731)
+..++|+++|+|+|...++.|..|++++|++.|++.+++|.+.|++|+||+|+|+++++.|.+.|.+|+.|++..||+++
T Consensus 165 k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi 244 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDI 244 (868)
T ss_pred CCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCCh
Q 004774 248 CHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHD 327 (731)
Q Consensus 248 ~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~ 327 (731)
++||++||++|||++|+++|+++|+|++.. |.+...+|.++|++||+|||+|+|||||+..|...++++..|.|.+||
T Consensus 245 ~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thd 322 (868)
T PLN03008 245 CYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHD 322 (868)
T ss_pred HHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccccc
Confidence 999999999999999999999999998752 222358999999999999999999999999987666778889999999
Q ss_pred HHHHhhhcCCCceEEecccCCCCcccccccc-----------cccccccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 328 EETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 328 ~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~-----------~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
+++.++++|++|.|.++|+++....+++++. ...+.++||||+||||+++++.+|+.+|||||+|+|++
T Consensus 323 eet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~g 402 (868)
T PLN03008 323 EETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDG 402 (868)
T ss_pred HHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCC
Confidence 9999999999999999998877666666542 23367999999999999877788999999999999999
Q ss_pred CCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhccccccc
Q 004774 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 476 (731)
Q Consensus 397 r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~ 476 (731)
||||+.|++++++++.+++||+||++.++.+.|++||||+|++|+||+|.+|+.+|.+||+.+++........++...|.
T Consensus 403 RwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~ 482 (868)
T PLN03008 403 RYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482 (868)
T ss_pred ccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence 99999999999999999999999998877788999999999999999999999999999999988642222233445567
Q ss_pred ccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccc
Q 004774 477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 556 (731)
Q Consensus 477 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~ 556 (731)
++.|+.+.++++++.|.....+++....+...+.+......++++|.+|++||++.|+++++|+.+++++.+++.++++.
T Consensus 483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~ 562 (868)
T PLN03008 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL 562 (868)
T ss_pred cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence 78888888888777654211111111111111100000123567889999999999999999999988888999999999
Q ss_pred cchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCC
Q 004774 557 VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPK 636 (731)
Q Consensus 557 ~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~ 636 (731)
..|.||+.+|+++|++||||||||||||+++...|+++++.++.|+|+++|+++|+++++++++|+|+||+|.+|+|+++
T Consensus 563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~ 642 (868)
T PLN03008 563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK 642 (868)
T ss_pred chhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCC------------------------CCCCCccc
Q 004774 637 TNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKRE------------------------EAPKDVLA 692 (731)
Q Consensus 637 ~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~------------------------~~lHaK~~ 692 (731)
+..+|+||+||++||+++|.+++++|.++|.+.+|.+|+.|||+|+++ .++|||+|
T Consensus 643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~ 722 (868)
T PLN03008 643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGM 722 (868)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEE
Confidence 889999999999999999999999999988755688999999997653 23899999
Q ss_pred cCCCceeeecccccccccccc--ccceeEEEeccccc
Q 004774 693 NNGDKMLGISFSNFFMRIEGS--QKCCHIHIFANSFL 727 (731)
Q Consensus 693 ivDd~~~~vGS~Nld~RS~~~--n~E~~~~i~~~~~~ 727 (731)
||||++++|||+|+|.|||.+ |+|+++.++++.-.
T Consensus 723 ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~ 759 (868)
T PLN03008 723 IVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHT 759 (868)
T ss_pred EECCCEEEEeccccCHhhccCCCCceEeEEecccccc
Confidence 999999999999999999998 99999999977643
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=7.9e-116 Score=992.12 Aligned_cols=651 Identities=46% Similarity=0.811 Sum_probs=568.3
Q ss_pred eeeccEEEEEEEEeeCCCCCCCCchhhhccccccc-cCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
+++||+|+|+|++|++|++++. ...++.++..+. .|.. ..+++||||+|.+++.
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------~~~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGV------------------------GKGESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccC------------------------CCCCCCceEEEEeCCc
Confidence 4899999999999999998544 333333322111 0110 0125899999999999
Q ss_pred eeeeeccccCC-CCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCCC
Q 004774 92 TVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (731)
Q Consensus 92 ~~~~T~v~~~~-~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~ 170 (731)
+++||+|+.+. .||+|||+|.+++++..++|+|+|+|.|.++..+||.+.||+.++.+|+.+++||+|++..++|.+..
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 99999999984 69999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEEEEEeecCCCCccccccCCCCCCCCcccccCCCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHH
Q 004774 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (731)
Q Consensus 171 g~L~lsl~y~p~~~~p~~~~gi~~~~e~~gv~~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~a 250 (731)
..|+++++|+|.+.++.|.+|+.+ +++.|++.+++|.+.|++|+||+|+|+++++.|.+.|.+|+.|++..||+++++|
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 899999999999999999999966 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHH
Q 004774 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (731)
Q Consensus 251 I~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~ 330 (731)
|.+||++|||++|+|+|+++|+|++.++.+.| ..+|.++|++||++||+||||+||+..+... ++..|+|.+|++.+
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~-~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPGG-DVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCCC-cchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHH
Confidence 99999999999999999999999765544443 5799999999999999999999999876543 34567889999999
Q ss_pred HhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCC---CCCCcceEEEEccccCCCCCCCCCCCCCcC
Q 004774 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA---SGNNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (731)
Q Consensus 331 ~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~---~~~~~~~vafvGG~NI~~~r~d~~~h~~~~ 407 (731)
.+++++.+|+|+++|++|....+++.+...++.++||||+||||++. .+.+|+.+|||||+|+|++||||+.|++++
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 99999999999999999976555555445567899999999999973 236899999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCC---CCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccchhhcc
Q 004774 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (731)
Q Consensus 408 ~~~~~~~~dy~n~~~~~---~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (731)
++++.+..||+||++.+ +.+.||+||||+|++|+||+|.+|+.+|.+||+.+++.. .+..+.
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhc
Confidence 99999999999998763 567889999999999999999999999999999988764 011112
Q ss_pred ccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHH
Q 004774 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQT 564 (731)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ 564 (731)
++.++..|.. |. .. +.+.+.|.+|++||++.++++++|..+++++.++++++++...+++|+.
T Consensus 440 ~~~~~~~P~~----------~~--~~-----p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~ 502 (808)
T PLN02270 440 ELEDVIIPPS----------PV--MF-----PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502 (808)
T ss_pred ccccccCCCC----------cc--cC-----CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHH
Confidence 2222211111 00 00 1345779999999999999999999998888888888877777899999
Q ss_pred HHHHHHHhccceEEEecccccccccCCCcc----cCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhH
Q 004774 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (731)
Q Consensus 565 ayl~~I~~Ak~~IyIenqYFip~~~~~~~~----~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v 640 (731)
+|+++|++|||+||||||||+++..+|+++ ++.++.|+|+++|+++|+++++++++++|+||+|.+|+|.+++..+
T Consensus 503 aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~v 582 (808)
T PLN02270 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSV 582 (808)
T ss_pred HHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchH
Confidence 999999999999999999999999999765 7889999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCC-----------------------------CCCCCcc
Q 004774 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKRE-----------------------------EAPKDVL 691 (731)
Q Consensus 641 ~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~-----------------------------~~lHaK~ 691 (731)
|+||+||++||+++|.++++.|.++|+..+|.+|+.|||+++++ .++|||+
T Consensus 583 q~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~ 662 (808)
T PLN02270 583 QAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKM 662 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeE
Confidence 99999999999999999999999999855799999999987432 2499999
Q ss_pred ccCCCceeeeccccccccccc--cccceeEEEecc
Q 004774 692 ANNGDKMLGISFSNFFMRIEG--SQKCCHIHIFAN 724 (731)
Q Consensus 692 ~ivDd~~~~vGS~Nld~RS~~--~n~E~~~~i~~~ 724 (731)
|||||+|++|||+|+|.|||. .|+||.+..+.|
T Consensus 663 ~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp 697 (808)
T PLN02270 663 MIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQP 697 (808)
T ss_pred EEEcCCEEEEeccccccccccCCccchhhhcccCc
Confidence 999999999999999999999 999999876544
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.9e-110 Score=947.53 Aligned_cols=576 Identities=43% Similarity=0.756 Sum_probs=503.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCCCceeEEEecccccccCCce-eEEEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWY 157 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~-~~~w~ 157 (731)
.||||+|.+++.+++|| .++.||+|||+|.+++++.. ++|+|+|+| +..+||.+.||+.++.+|+. +++||
T Consensus 36 ~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~ 108 (758)
T PLN02352 36 KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFF 108 (758)
T ss_pred CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEE
Confidence 49999999999999999 66679999999999999998 799999998 58899999999999998866 99999
Q ss_pred EccCCCCCCCCCCceEEEEEEEeecCCCCccccccCCCCCCCCcccccCCCCCCCeeEEeecccccCCCCCceEcCCCCc
Q 004774 158 DIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKL 237 (731)
Q Consensus 158 ~l~~~~~~~~~~~g~L~lsl~y~p~~~~p~~~~gi~~~~e~~gv~~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~ 237 (731)
++++..++|... ..|+++|+|+|.+.++.|..|+.+ +++.|++.+++|.+.|++|+||+|+|..+++.|.+.| .
T Consensus 109 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~ 182 (758)
T PLN02352 109 PLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----C 182 (758)
T ss_pred EcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----e
Confidence 999999998754 799999999999999999999977 6999999999999999999999999999999999998 4
Q ss_pred cCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCc
Q 004774 238 YKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (731)
Q Consensus 238 y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~ 317 (731)
|...++|++|++||++||++|+|++|+|+|+++|+|++.++.|.+.+.+|.++|++||+|||+||||+||+.++... +
T Consensus 183 ~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~ 260 (758)
T PLN02352 183 GSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--I 260 (758)
T ss_pred cCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--c
Confidence 44578999999999999999999999999999999987543332234899999999999999999999999987643 3
Q ss_pred cCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCC--CCcceEEEEccccCCC
Q 004774 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCD 395 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~--~~~~~vafvGG~NI~~ 395 (731)
+..+.|.++++...++++|.+|+|.+.|+++. ..++.++||||+||||++.++ ..|+.+|||||+|+|+
T Consensus 261 ~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~ 331 (758)
T PLN02352 261 KNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCD 331 (758)
T ss_pred ccccccccchHHHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccC
Confidence 55677888888899999999999998876553 234679999999999997332 5778899999999999
Q ss_pred CCCCCCCCCCcCCCCcc-ccCCCCCCCCC---CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhcc
Q 004774 396 GRYDTPEHRLFRDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKR 471 (731)
Q Consensus 396 ~r~d~~~h~~~~~~~~~-~~~dy~n~~~~---~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~ 471 (731)
+||||+.|++++++++. +++||+|+.+. ++.+.||+||||+||+|+||+|+||..+|.||||++++..
T Consensus 332 GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~-------- 403 (758)
T PLN02352 332 GRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS-------- 403 (758)
T ss_pred CccCCccCCcccccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc--------
Confidence 99999999999998875 56899999876 3567889999999999999999999999999999987653
Q ss_pred cccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhh
Q 004774 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (731)
Q Consensus 472 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~ 551 (731)
.+....++.+... .|.. + ....+.|.+|++||++.+++.++|..
T Consensus 404 -------~l~p~~~~~~~~~------------~p~~---~----~~~~~~w~VQv~RSid~~sa~~~P~~---------- 447 (758)
T PLN02352 404 -------VLVPTSSIRNLVH------------QPGS---S----ESNNRNWKVQVYRSIDHVSASHMPRN---------- 447 (758)
T ss_pred -------ccCCccccccccc------------CCCC---C----cccCCcccceEEEecCccccccCCCC----------
Confidence 0111111111111 0100 0 12357899999999998888887742
Q ss_pred ccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 004774 552 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (731)
Q Consensus 552 ~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~ 631 (731)
...++||+++|+++|++||||||||||||++++.+|+++++.++.|+|+.+|+++|+++++++++|+|+||+|.+|
T Consensus 448 ----~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~P 523 (758)
T PLN02352 448 ----LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWP 523 (758)
T ss_pred ----CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 2347999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCC---------------------------
Q 004774 632 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKRE--------------------------- 684 (731)
Q Consensus 632 ~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~--------------------------- 684 (731)
+|.+++..+++||+||++||+++|.++.+.|.++|.+.+|.+||+|||||+++
T Consensus 524 eG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr 603 (758)
T PLN02352 524 EGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRR 603 (758)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCchhhhcccccc
Confidence 99998889999999999999999999999999999755799999999999753
Q ss_pred --CCCCCccccCCCceeeeccccccccccc--cccceeEEEeccccc
Q 004774 685 --EAPKDVLANNGDKMLGISFSNFFMRIEG--SQKCCHIHIFANSFL 727 (731)
Q Consensus 685 --~~lHaK~~ivDd~~~~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 727 (731)
.++|||+|||||++++|||||+|.|||. .|+||++.+++++..
T Consensus 604 ~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~ 650 (758)
T PLN02352 604 FMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNG 650 (758)
T ss_pred eeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccC
Confidence 2389999999999999999999999999 999999999997654
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-98 Score=846.05 Aligned_cols=653 Identities=40% Similarity=0.653 Sum_probs=547.7
Q ss_pred CCceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEE
Q 004774 8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (731)
Q Consensus 8 ~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~ 87 (731)
.+..+.+.||+|+++|..+..+..+..+..+.+.....+..|........-....+|.+.+. ..+-++-.+.++|+++.
T Consensus 67 ~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~e~Ylt~~ 145 (887)
T KOG1329|consen 67 GSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSL-NSSMEKRKTLENYLTVV 145 (887)
T ss_pred cceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCc-ccchhhhhhccchheee
Confidence 44556699999999999999999887777666666666665554433222223445555322 11122334589999999
Q ss_pred ECCeeeeeeccccCC-CCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 88 VPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 88 l~~~~~~~T~v~~~~-~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
+......+|.+..+. .+|.|.+.|.+...+....+.+++.+.+..+ ...+|.+.+++.++..+.....|+++++.+++
T Consensus 146 l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 146 LHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGK 225 (887)
T ss_pred echhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCc
Confidence 999888899999887 8999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred CCCCCceEEEEEEEeecCCCCccccccCCCCCCCCcccccCCCCCCCeeEEeecccccCCCCCceEcCCCC-ccCCcchH
Q 004774 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTCW 244 (731)
Q Consensus 166 ~~~~~g~L~lsl~y~p~~~~p~~~~gi~~~~e~~gv~~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~-~y~~~~~f 244 (731)
+.+..-.+.+++.|.+......+.-+..+++...+.+.+.++...|..+++|++.|..+++.|.+.+.+|+ -|....+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~ 305 (887)
T KOG1329|consen 226 PHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYW 305 (887)
T ss_pred cccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHH
Confidence 87777778888999999999999999888899999999999999999999999999999999999999999 45558899
Q ss_pred HHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCccc
Q 004774 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA 324 (731)
Q Consensus 245 ~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~ 324 (731)
+++++||.+||+.|||++||++|+++|+|+...+ ...||.++|++||++||+|+|||||++.+... ..
T Consensus 306 edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i~ 373 (887)
T KOG1329|consen 306 EDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------IN 373 (887)
T ss_pred HHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------cC
Confidence 9999999999999999999999999999987633 34899999999999999999999999987642 23
Q ss_pred CChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCC
Q 004774 325 THDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404 (731)
Q Consensus 325 ~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~ 404 (731)
+++++....+.|++|+|.++|+++.+. ....|+||||+||||.+ +||+||+|+|+|||||++|+
T Consensus 374 S~~~k~~l~~lH~nV~vlr~P~~~~~~--------~~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~ 437 (887)
T KOG1329|consen 374 SHYEKTRLFFLHPNVKVLRCPRHPGSG--------PTTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHP 437 (887)
T ss_pred chhHHHHHhhcCCCeEEEECCCCcCCC--------CceEEecceEEEEEcce--------eccccceeccccccCCcccc
Confidence 456778888999999999988877532 13579999999999998 99999999999999999999
Q ss_pred CcCCCCccccCCCCCCCCC-----CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccc
Q 004774 405 LFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479 (731)
Q Consensus 405 ~~~~~~~~~~~dy~n~~~~-----~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~ 479 (731)
+++++++.+++||+||++. ++.+.|||||||+||++.||+|+|+++||+||||+....+. . .++.
T Consensus 438 L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----~-----~~~~ 507 (887)
T KOG1329|consen 438 LFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----P-----YDDS 507 (887)
T ss_pred ccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----C-----CCcc
Confidence 9999999999999999987 67889999999999999999999999999999999876530 0 0111
Q ss_pred hhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccch
Q 004774 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVID 559 (731)
Q Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e 559 (731)
+..+...+.+..|. .| ...++..+.+|+.+|++.++..+ ++.....++.+++....|
T Consensus 508 ~p~L~p~~~~~~~~----------~~---------~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e 564 (887)
T KOG1329|consen 508 LPLLLPISDITGPS----------EP---------NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIE 564 (887)
T ss_pred ceeecChhhhcCCC----------Cc---------cccccccccccceeeccCCcccc----hHHhhhhcccccCCCchH
Confidence 11111111111110 11 13456778999999998876544 233334577777777789
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CC
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG--DP 635 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~--~g--~~ 635 (731)
+||++||+++|++||||||||||||+.+...|. .+.|.++++|+++|++|+++++.|+|+||+|.+| || .+
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p 639 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTP 639 (887)
T ss_pred HHHHHHHHHHHHhccceEEEeeeeEEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCC
Confidence 999999999999999999999999999987654 4688999999999999999999999999999999 88 66
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCcCCeEEEEeccCCCC----------CCCCccccCCCceeeeccc
Q 004774 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVD-AHPQDYLSFYCLGKREE----------APKDVLANNGDKMLGISFS 704 (731)
Q Consensus 636 ~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~-~~~~~yi~~y~~~~~~~----------~lHaK~~ivDd~~~~vGS~ 704 (731)
.+..+|+||+||++||++||.+++++|.+.|++ .++-+|+.|+|+++++. ++|||+|||||++++||||
T Consensus 640 ~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~~vIIGSA 719 (887)
T KOG1329|consen 640 GSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDEYVIIGSA 719 (887)
T ss_pred CcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCCEEEEeec
Confidence 778999999999999999999999999999997 45566777777777642 2999999999999999999
Q ss_pred cccccccccc--cceeEEEeccccc
Q 004774 705 NFFMRIEGSQ--KCCHIHIFANSFL 727 (731)
Q Consensus 705 Nld~RS~~~n--~E~~~~i~~~~~~ 727 (731)
|+|-|||.-| +|+.+.++++...
T Consensus 720 NINqRSm~G~RDSEIA~~~~d~~~~ 744 (887)
T KOG1329|consen 720 NINQRSMLGNRDSEIAMGIYDTNHV 744 (887)
T ss_pred ccchhhccCCccceeEEEEecccch
Confidence 9999999876 9999999999864
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=4e-76 Score=678.18 Aligned_cols=448 Identities=29% Similarity=0.465 Sum_probs=335.1
Q ss_pred ccCCCC----CCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCC
Q 004774 204 AYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPL 279 (731)
Q Consensus 204 s~~p~~----~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~ 279 (731)
+++|++ .||.+++|+|| +++|++|++||++||++|+|++|||+|++||+|+..
T Consensus 322 SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~--- 378 (1068)
T PLN02866 322 SFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH--- 378 (1068)
T ss_pred CcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC---
Confidence 456766 69999999999 689999999999999999999999999999998421
Q ss_pred CCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhh--cCCCceEEecccCCCCccccccc
Q 004774 280 PRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFKQ 357 (731)
Q Consensus 280 ~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gV~v~~~~~~p~~~~~~~~~ 357 (731)
.+.+.+|.++|++||++||+||||+||++|..... . . ....+.| .++||+|..+|....
T Consensus 379 -D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--S------~~~k~~L~~lh~gI~V~r~P~~~~-------- 439 (1068)
T PLN02866 379 -DHESSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--S------VYSKRRLLGIHENVKVLRYPDHFS-------- 439 (1068)
T ss_pred -CchHHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--c------hhhHHHHHHhCCCeEEEecCcccc--------
Confidence 11238999999999999999999999998753211 0 0 1111222 478999864332110
Q ss_pred ccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCcccc-CCCCCCCCC-------------
Q 004774 358 QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFK-DDFHNPTYP------------- 423 (731)
Q Consensus 358 ~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~-~dy~n~~~~------------- 423 (731)
...+++|||||++||||+ |||+||+|||.+||||++|++.|.....|+ +||+|++..
T Consensus 440 -~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~l 510 (1068)
T PLN02866 440 -SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDEL 510 (1068)
T ss_pred -cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccc
Confidence 124689999999999999 999999999999999999999887666665 799999753
Q ss_pred CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccch-----hhhhhcc---c-cc---------cc-----c---
Q 004774 424 IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTE-----LTFKFKR---V-SH---------WR-----D--- 477 (731)
Q Consensus 424 ~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~-----~~~~~~~---~-~~---------~~-----~--- 477 (731)
|+...|||||||+||+|+||+|++|+++|++|||++++.+. +..+... + ++ +. +
T Consensus 511 dR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 590 (1068)
T PLN02866 511 DRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQK 590 (1068)
T ss_pred ccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccccccccccccccc
Confidence 35667889999999999999999999999999999886530 0000000 0 00 00 0
Q ss_pred -----cch---hhccccccccCCcccc-------------------------cC---CCccccCC----CCcc-------
Q 004774 478 -----DYL---IKIGRISWILSPELSL-------------------------KT---NGTTIVPR----DDNV------- 510 (731)
Q Consensus 478 -----~~l---~~~~~~~~~~~~~~~~-------------------------~~---~~~~~~p~----~~~~------- 510 (731)
+.+ .+...++.++++.... +. ......|. ++..
T Consensus 591 ~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 670 (1068)
T PLN02866 591 GIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVK 670 (1068)
T ss_pred cccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0001111111110000 00 00000000 0000
Q ss_pred ---------------------------c-ccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHH
Q 004774 511 ---------------------------V-RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSI 562 (731)
Q Consensus 511 ---------------------------~-~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI 562 (731)
+ ........+++.+||+||+..|+... ...|+||
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~------------------~~~E~SI 732 (1068)
T PLN02866 671 MSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT------------------SQVEESI 732 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC------------------CchHHHH
Confidence 0 00001224568999999986665321 1258999
Q ss_pred HHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCC---CC
Q 004774 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP---KT 637 (731)
Q Consensus 563 ~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~--g~~---~~ 637 (731)
++||+++|++|+||||||||||++...+ +..+.|.|+.+|+.+|++|+++++.|+|+||+|.+|+ |++ ++
T Consensus 733 ~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~ 807 (1068)
T PLN02866 733 HAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGA 807 (1068)
T ss_pred HHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccc
Confidence 9999999999999999999999998532 5678999999999999999999999999999999996 544 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCcCCeEEEEeccCCC------------CCCCCccccCCCceeeeccc
Q 004774 638 NTVQEILFWQSQTMQMMYSVVAQELREM-QVDAHPQDYLSFYCLGKRE------------EAPKDVLANNGDKMLGISFS 704 (731)
Q Consensus 638 ~~v~~~~~~~~~ti~~~~~~~~~~Ll~~-Gv~~~~~~yi~~y~~~~~~------------~~lHaK~~ivDd~~~~vGS~ 704 (731)
..++++|+||++||++|+.++++.|.++ |+ ++.+|++||+||+++ -++|||+|||||++++||||
T Consensus 808 ~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~--~p~dYisf~~LRn~~~l~~~~~~vteqIYVHsK~~IvDD~~~iiGSa 885 (1068)
T PLN02866 808 ASVRAIMHWQYRTICRGKNSILHNLYDLLGP--KTHDYISFYGLRAYGRLFEGGPLATSQIYVHSKIMIVDDRAALIGSA 885 (1068)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHeEeeecccccccccCCCcccceeeEEEeeEEEEcCcEEEEccc
Confidence 6799999999999999999999999984 65 499999999999763 23899999999999999999
Q ss_pred ccccccc--ccccceeEEEeccccc
Q 004774 705 NFFMRIE--GSQKCCHIHIFANSFL 727 (731)
Q Consensus 705 Nld~RS~--~~n~E~~~~i~~~~~~ 727 (731)
|+|.||| ..|+|+++.+.|++.+
T Consensus 886 NiN~RS~~G~rDsEia~~~~d~~~~ 910 (1068)
T PLN02866 886 NINDRSLLGSRDSEIGVVIEDKEFV 910 (1068)
T ss_pred cccccccccCcCcceeeeeeccccc
Confidence 9999999 6899999999999765
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.6e-58 Score=520.01 Aligned_cols=337 Identities=20% Similarity=0.268 Sum_probs=263.9
Q ss_pred cccCCCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCC
Q 004774 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (731)
Q Consensus 203 ~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G 282 (731)
.++.|++.||.+++|.|| +++|++++++|++||++|+|++|+|.+ |. .|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKS-------DE----IG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeC-------Cc----HH
Confidence 356899999999999999 689999999999999999999999854 43 55
Q ss_pred CCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccc
Q 004774 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (731)
Q Consensus 283 ~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~ 362 (731)
..+.++|++||+|||+|||| +|++||... .+.+.+.|+++||++..+. |... .++ ..++
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~--P~~~-~~~---~~~~ 238 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFD--PIFS-AWL---LETV 238 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEec--Cccc-ccc---cccc
Confidence 89999999999999999999 499998531 2567788999999998542 2110 111 2357
Q ss_pred cccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC
Q 004774 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 442 (731)
Q Consensus 363 ~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~G 442 (731)
|+|||||++||||+ +||+||+||+++|+.. ..+.++|||+|++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d~y~~~--------------------------~~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGDEYLGR--------------------------SKKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccchhhcCC--------------------------CCCCCCceEEEEEEEC
Confidence 99999999999999 9999999999954422 1235789999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhcccccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCe
Q 004774 443 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (731)
Q Consensus 443 pav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (731)
|+|.+++..|.++|+.+++... . ..|. .. ..+. ..|.. ....+..
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~------~-~~~~--------~~---~~~~---------~~~~~--------~~~~~~~ 329 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN------T-YSWD--------PF---MNRQ---------YFPGK--------EISNAEG 329 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc------c-cccc--------cc---cchh---------cCCCc--------cccCCCe
Confidence 9999999999999998765310 0 0000 00 0000 01110 0012345
Q ss_pred eeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCc
Q 004774 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (731)
Q Consensus 523 ~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~ 602 (731)
.+|++.+ + |+. .+.+++++|+.+|.+||++|||+||||+|+.
T Consensus 330 ~~q~~~s---g-----p~~----------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-------------- 371 (509)
T PRK12452 330 AVQIVAS---G-----PSS----------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-------------- 371 (509)
T ss_pred EEEEEeC---C-----CCc----------------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH--------------
Confidence 7898887 3 332 1468999999999999999999999999985
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccC
Q 004774 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGK 682 (731)
Q Consensus 603 i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~ 682 (731)
.+..+|..| ++|||+|+||+|..+| ++.+. .+..++++.|+++||+ ++.|.
T Consensus 372 ---~l~~aL~~A--a~rGV~Vrii~p~~~D----~~~~~-----------~a~~~~~~~L~~aGv~------I~~y~--- 422 (509)
T PRK12452 372 ---ETLTLLRLS--AISGIDVRILYPGKSD----SIISD-----------QASQSYFTPLLKAGAS------IYSYK--- 422 (509)
T ss_pred ---HHHHHHHHH--HHcCCEEEEEcCCCCC----hHHHH-----------HHHHHHHHHHHHcCCE------EEEec---
Confidence 778899888 6799999999998765 33332 3346888999999997 33342
Q ss_pred CCCCCCCccccCCCceeeeccccccccccccccceeEEEecccccC
Q 004774 683 REEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 683 ~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
++++|+|++||||++++|||+|||.||+.+|+|++++++++++++
T Consensus 423 -~~~lHaK~~ivD~~~a~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 467 (509)
T PRK12452 423 -DGFMHAKIVLVDDKIATIGTANMDVRSFELNYEIISVLYESETVH 467 (509)
T ss_pred -CCCeeeeEEEECCCEEEEeCcccCHhHhhhhhhccEEEECHHHHH
Confidence 479999999999999999999999999999999999999998764
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=7.5e-57 Score=508.72 Aligned_cols=334 Identities=22% Similarity=0.282 Sum_probs=262.7
Q ss_pred cccCCCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCC
Q 004774 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (731)
Q Consensus 203 ~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G 282 (731)
....|++.||++++|.|| +++|++|+++|++||++|+|++|+|.+ |. .|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d~----~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------DG----LG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------CC----cH
Confidence 456899999999999999 689999999999999999999999853 43 45
Q ss_pred CCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccc
Q 004774 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (731)
Q Consensus 283 ~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~ 362 (731)
.++.++|.+||+|||+|||| +|++|+.... .+.+.+.|+++||++..+. |.....+. ..+.
T Consensus 156 --~~i~~aL~~aa~rGV~VriL-~D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~--p~~~~~~~---~~~~ 216 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLL-YDSIGSFAFF-----------RSPYPEELRNAGVEVVEFL--KVNLGRVF---RRRL 216 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCCC-----------cHHHHHHHHHCCCEEEEec--CCCccccc---cccc
Confidence 89999999999999999999 5999986421 1336777899999998541 21111111 3457
Q ss_pred cccccceeEEeccCCCCCCcceEEEEccccCCC-CCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEe
Q 004774 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (731)
Q Consensus 363 ~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~-~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~ 441 (731)
|+|||||++||||+ +||+||+||++ +|+... .+.++|||+|++++
T Consensus 217 n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~~--------------------------~~~~~w~D~~~~i~ 262 (483)
T PRK01642 217 DLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQD--------------------------PGVGQWRDTHVRIE 262 (483)
T ss_pred ccccCceEEEEcCC--------EEEeCCcccCCHHHhCCC--------------------------CCCCCcEEEEEEEE
Confidence 89999999999999 99999999999 655321 23578999999999
Q ss_pred ChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCC
Q 004774 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (731)
Q Consensus 442 Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (731)
||+|.+++..|.++|+.+++... .. .. +.. ...|. ...+.
T Consensus 263 Gp~v~~l~~~F~~dW~~~~~~~~---------------~~---~~-----~~~-------~~~~~----------~~~~~ 302 (483)
T PRK01642 263 GPVVTALQLIFAEDWEWETGERI---------------LP---PP-----PDV-------LIMPF----------EEASG 302 (483)
T ss_pred cHHHHHHHHHHHHHHHHHhCccc---------------CC---CC-----ccc-------ccCCc----------cCCCC
Confidence 99999999999999998765410 00 00 000 00010 11234
Q ss_pred eeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCC
Q 004774 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (731)
Q Consensus 522 ~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n 601 (731)
..+|++.+ + |..+ +..++++|+.+|.+||++|||+||||+|+.
T Consensus 303 ~~~qi~~s---g-----P~~~----------------~~~~~~~~~~~I~~A~~~I~I~tpYfip~~------------- 345 (483)
T PRK01642 303 HTVQVIAS---G-----PGDP----------------EETIHQFLLTAIYSARERLWITTPYFVPDE------------- 345 (483)
T ss_pred ceEEEEeC---C-----CCCh----------------hhHHHHHHHHHHHHhccEEEEEcCCcCCCH-------------
Confidence 57888877 3 4322 467999999999999999999999999985
Q ss_pred ccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEecc
Q 004774 602 LIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLG 681 (731)
Q Consensus 602 ~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~ 681 (731)
.+..+|..| ++|||+|+||+|..++ +..+. .+..+++++|+++||+ +..|
T Consensus 346 ----~i~~aL~~A--a~rGV~Vril~p~~~d----~~~~~-----------~~~~~~~~~L~~~Gv~------I~~y--- 395 (483)
T PRK01642 346 ----DLLAALKTA--ALRGVDVRIIIPSKND----SLLVF-----------WASRAFFTELLEAGVK------IYRY--- 395 (483)
T ss_pred ----HHHHHHHHH--HHcCCEEEEEeCCCCC----cHHHH-----------HHHHHHHHHHHHcCCE------EEEe---
Confidence 788999888 6799999999998765 33332 2346788999999996 3333
Q ss_pred CCCCCCCCccccCCCceeeeccccccccccccccceeEEEecccccC
Q 004774 682 KREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 682 ~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
.++++|||++||||++++|||+|||.||+.+|+|++++|+++++++
T Consensus 396 -~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~~N~E~~~~i~d~~~~~ 441 (483)
T PRK01642 396 -EGGLLHTKSVLVDDELALVGTVNLDMRSFWLNFEITLVIDDTGFAA 441 (483)
T ss_pred -CCCceEeEEEEECCCEEEeeCCcCCHhHHhhhhcceEEEECHHHHH
Confidence 2478999999999999999999999999999999999999998865
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.7e-55 Score=483.24 Aligned_cols=327 Identities=20% Similarity=0.253 Sum_probs=253.6
Q ss_pred CCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCc
Q 004774 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (731)
Q Consensus 207 p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~ 286 (731)
+++.||++++|.|| +++|++++++|++||++|+|++|+|.+ |. .| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFE-------DK----VG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEec-------Cc----hH--HH
Confidence 67899999999999 689999999999999999999999854 32 45 89
Q ss_pred HHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccc
Q 004774 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366 (731)
Q Consensus 287 l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~ 366 (731)
|.++|++||+|||+||||+ |..|+... ++.+.+.|.++||+++.+.+.+. ++. .....+.|+
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~----~~~-~~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR----LLG-MRTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc----ccc-cccccccCC
Confidence 9999999999999999995 99987542 25677888999999985422221 111 012334699
Q ss_pred cceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHH
Q 004774 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (731)
Q Consensus 367 HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~ 446 (731)
|+|++||||+ +||+||+|++++|+.. ....+|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999999 9999999999865532 1124699999999999999
Q ss_pred HHHHHHHHHHHhhcccchhhhhhcccccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEE
Q 004774 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (731)
Q Consensus 447 dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv 526 (731)
+++..|.+.|....... ..|. +. +. .+. ....+...+|+
T Consensus 157 ~l~~~f~~~w~~~~~~~---------~~~~--------~~-----~~----------~~~---------~~~~g~~~~~~ 195 (411)
T PRK11263 157 DIHQFELEALPGQSAAR---------RWWR--------RH-----HR----------AEE---------NRQPGEAQALL 195 (411)
T ss_pred HHHHHHHHHHhhcccch---------hhhc--------cc-----cc----------Ccc---------cCCCCCeEEEE
Confidence 99999999997532110 0000 00 00 000 01124456777
Q ss_pred EeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHH
Q 004774 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (731)
Q Consensus 527 ~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~ 606 (731)
+.+ + |+. ....|+++|+.+|.+|+++|||+||||+|+. .
T Consensus 196 v~~---~-----p~~----------------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~ 234 (411)
T PRK11263 196 VWR---D-----NEE----------------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------R 234 (411)
T ss_pred EEC---C-----Ccc----------------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------H
Confidence 755 2 221 1357999999999999999999999999974 7
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCC
Q 004774 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (731)
Q Consensus 607 l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~ 686 (731)
+..+|..| ++|||+|+||+|+.++ .++++ .+...+|+.|+++||+ ++ .|+ ..+
T Consensus 235 l~~aL~~A--a~RGV~V~ii~~~~~d----~~~~~-----------~a~~~~~~~Ll~~Gv~--I~----~y~----~~~ 287 (411)
T PRK11263 235 LLRALRNA--ARRGVRVRLILQGEPD----MPIVR-----------VGARLLYNYLLKGGVQ--IY----EYC----RRP 287 (411)
T ss_pred HHHHHHHH--HHCCCEEEEEeCCCCC----cHHHH-----------HHHHHHHHHHHHCCCE--EE----Eec----CCC
Confidence 88999988 6799999999998764 44443 2345788999999996 32 332 368
Q ss_pred CCCccccCCCceeeeccccccccccccccceeEEEecccccC
Q 004774 687 PKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 687 lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
+|||+++|||+|++|||+|||+||+.+|+|++++|+|++|++
T Consensus 288 lHaK~~viD~~~~~vGS~Nld~rS~~lN~E~~~~i~d~~~a~ 329 (411)
T PRK11263 288 LHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIRDRAFNQ 329 (411)
T ss_pred ceeEEEEECCCEEEEeCCcCCHHHhhhhhhcCEEEeCHHHHH
Confidence 999999999999999999999999999999999999999875
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=1.2e-42 Score=391.42 Aligned_cols=338 Identities=22% Similarity=0.256 Sum_probs=251.0
Q ss_pred CCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHH
Q 004774 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (731)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~ 288 (731)
..++.++++.+| .+.|.++.++|++|+++|++++|++.. +. .| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d~----~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------DE----LG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------Ch----hH--HHHH
Confidence 789999999998 689999999999999999999999853 32 44 8999
Q ss_pred HHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhcCCCc-eEEecccCCCCccccccccccccccccc
Q 004774 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVLAPRYASSKLSYFKQQIVGTIFTHH 367 (731)
Q Consensus 289 ~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV-~v~~~~~~p~~~~~~~~~~~~~~~~r~H 367 (731)
++|.+||++||+||+|+ |++|+.... .......++++|+ +++.+.+..... ......+.|+|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASPRP-----LRFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCccccc-----chhhhhhcccc
Confidence 99999999999999996 999883310 2466778899999 666432221110 01345789999
Q ss_pred ceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHH
Q 004774 368 QKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYD 447 (731)
Q Consensus 368 rKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~d 447 (731)
+|++|||++ ++|+||+|++++|+... ...++|+|++++++||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHHH
Confidence 999999998 99999999999877542 12358999999999999999
Q ss_pred HHHHHHHHHHhhcccchhhhhhcccccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEE
Q 004774 448 VLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIF 527 (731)
Q Consensus 448 l~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~ 527 (731)
++..|.++|+....... .+. .. ..+. .+.. .. ........+|++
T Consensus 213 l~~~f~~~w~~~~~~~~--------------~~~---~~---~~~~----------~~~~--~~----~~~~~~~~~~~~ 256 (438)
T COG1502 213 LARLFIQDWNLESGSSK--------------PLL---AL---VRPP----------LQSL--SL----LPVGRGSTVQVL 256 (438)
T ss_pred HHHHHHHHhhhccCcCc--------------ccc---cc---cccc----------cccc--cc----cccccCcceEEE
Confidence 99999999998743320 000 00 0000 0000 00 001112236777
Q ss_pred eeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHH
Q 004774 528 RSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMEL 607 (731)
Q Consensus 528 rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l 607 (731)
.+. |..... .....+...|+.+|.+|+++|+|++|||+|+. ++
T Consensus 257 ~~~--------P~~~~~------------~~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~ 299 (438)
T COG1502 257 SSG--------PDKGLG------------SELIELNRLLLKAINSARESILIATPYFVPDR-----------------EL 299 (438)
T ss_pred ecC--------Cccccc------------hhhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HH
Confidence 763 321100 00112458999999999999999999999995 77
Q ss_pred HHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCC-C
Q 004774 608 ALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE-A 686 (731)
Q Consensus 608 ~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~-~ 686 (731)
..+|..| +.+||+|+|++|..... +...+. .++..++..|+++|++ + |... .+ +
T Consensus 300 ~~al~~a--~~~Gv~V~ii~~~~~~~--d~~~~~-----------~~~~~~~~~l~~~gv~--i------~~~~--~g~~ 354 (438)
T COG1502 300 LAALKAA--ARRGVDVRIIIPSLGAN--DSAIVH-----------AAYRAYLKELLEAGVK--V------YEYP--GGAF 354 (438)
T ss_pred HHHHHHH--HhcCCEEEEEeCCCCCC--ChHHHH-----------HHHHHHHHHHHHhCCE--E------EEec--CCCc
Confidence 8899888 67999999999965322 233332 4557888999999986 2 3332 23 8
Q ss_pred CCCccccCCCceeeeccccccccccccccceeEEEecccccC
Q 004774 687 PKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 687 lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
+|+|++||||++++|||+|||+||+.+|+|++++|+++++++
T Consensus 355 lH~K~~iiD~~~~~vGS~N~~~rS~~lN~E~~~~i~d~~~~~ 396 (438)
T COG1502 355 LHSKVMIIDDRTVLVGSANLDPRSLRLNFEVGLVIEDPELAL 396 (438)
T ss_pred ceeeEEEEcCCEEEEeCCcCCHhHHHHhhhheeEEeCHHHHH
Confidence 999999999999999999999999999999999999998764
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=7.1e-42 Score=379.14 Aligned_cols=351 Identities=13% Similarity=0.072 Sum_probs=230.5
Q ss_pred CCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHH
Q 004774 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (731)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~ 288 (731)
..+|.++++.+| .++|++|+++|++|+++|+|++|+|.. |+ .| ..|.
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~-------D~----~g--~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLED-------DE----AG--REIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecC-------Cc----hH--HHHH
Confidence 468889999998 689999999999999999999999853 43 55 8999
Q ss_pred HHHHHHhh--cCCEEEEEEeCCC-------CccCccCccCCCcccCChHHHHhhhcC--CCceEEecccCCCCccccccc
Q 004774 289 ELLKYKSE--EGVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKH--SSVNCVLAPRYASSKLSYFKQ 357 (731)
Q Consensus 289 ~~L~~aA~--rGVkVriLv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~--~gV~v~~~~~~p~~~~~~~~~ 357 (731)
++|.+|++ +||+|+||+ |.. |+... .....+.+.+++ +||++.++. .|.+
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~-~p~~------- 129 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYG-VPVN------- 129 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcC-Cccc-------
Confidence 99999854 899999996 985 43210 012445555654 379988652 2221
Q ss_pred ccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeee
Q 004774 358 QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLH 437 (731)
Q Consensus 358 ~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~ 437 (731)
...++.++|+|++|||++ |+|+| +||++.|+... .++ ..|..
T Consensus 130 -~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~~--------------------------~~~--r~Dry 171 (451)
T PRK09428 130 -TREALGVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQH--------------------------DKY--RYDRY 171 (451)
T ss_pred -cchhhhhceeeEEEECCC--------EEEec-ccccHHHhcCC--------------------------ccc--CcceE
Confidence 123567899999999999 99997 79999665321 111 23778
Q ss_pred eeEeChHHHHHHHHHHHHHHhhcccchhhhhhccccccccc--chhh-ccccccccCCcccccCCCccccCCCCcccccc
Q 004774 438 CRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD--YLIK-IGRISWILSPELSLKTNGTTIVPRDDNVVRVS 514 (731)
Q Consensus 438 ~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~--~l~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 514 (731)
++|+||++.++...|+++|..++... . .+.. .|.+. .+.. +......+... ....+.
T Consensus 172 ~~i~g~~la~~~~~fi~~~~~~~~~v--~-~l~~--~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~-------- 231 (451)
T PRK09428 172 HLIRNAELADSMVNFIQQNLLNSPAV--N-RLDQ--PNRPKTKEIKNDIRQFRQRLRDA-------AYQFQG-------- 231 (451)
T ss_pred EEEeCchHHHHHHHHHHHHhhccCcc--c-cccc--cccccchhhHHHHHHHHHHHhhh-------ccCccc--------
Confidence 88999999999999999997654321 0 0000 00000 0000 00000000000 000000
Q ss_pred cCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcc
Q 004774 515 KEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSY 594 (731)
Q Consensus 515 ~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~ 594 (731)
. .+...+++....+.+ | ...+...+..+|.+|+++|+|.||||+|+.
T Consensus 232 -~--~~~~~~~v~p~~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~~------ 278 (451)
T PRK09428 232 -Q--ANNDELSVTPLVGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLPA------ 278 (451)
T ss_pred -c--cCCCCeEEeeeeccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCCH------
Confidence 0 011123333322111 1 146788999999999999999999999985
Q ss_pred cCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC----CCChhHHH-HHHHHHHHHHHHHHHHHHHHHhcc---
Q 004774 595 KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD----PKTNTVQE-ILFWQSQTMQMMYSVVAQELREMQ--- 666 (731)
Q Consensus 595 ~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~----~~~~~v~~-~~~~~~~ti~~~~~~~~~~Ll~~G--- 666 (731)
.+..+|..| +++||+|.||+|+...+| .+++++.. ...+.+...-......++.|+++|
T Consensus 279 -----------~l~~~L~~a--~~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~ 345 (451)
T PRK09428 279 -----------ILVRNIIRL--LRRGKKVEIIVGDKTANDFYIPPDEPFKIIGALPYLYEINLRRFAKRLQYYIDNGQLN 345 (451)
T ss_pred -----------HHHHHHHHH--HhcCCcEEEEcCCcccccCcCCCccHHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcce
Confidence 678888888 569999999999875433 23444331 111111110001111133567777
Q ss_pred cCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeEEEeccc
Q 004774 667 VDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANS 725 (731)
Q Consensus 667 v~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~ 725 (731)
|+ +|.. .+.++|||.++|||+|++|||+|||+||+.+|+|++++|+|+.
T Consensus 346 v~--------i~~~--~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~ln~E~~l~i~d~~ 394 (451)
T PRK09428 346 VR--------LWKD--GDNSYHLKGIWVDDRWMLLTGNNLNPRAWRLDLENALLIHDPK 394 (451)
T ss_pred EE--------EEec--CCCcceEEEEEEeCCEEEEcCCCCChhHhhhcccceEEEECCh
Confidence 53 3332 3478999999999999999999999999999999999999985
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=372.67 Aligned_cols=327 Identities=14% Similarity=0.144 Sum_probs=219.3
Q ss_pred chHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCC
Q 004774 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~ 321 (731)
..|+.+.++|.+||++|+|++|.|.|+ +......| .+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~~------d~~~~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~~--------- 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSLS------DEVGTNFG--TMILNEIIQLPKRGVRVRIAV-NKSNKP--------- 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEecC------ccccchhH--HHHHHHHHHHHHCCCEEEEEE-CCCCCc---------
Confidence 478999999999999999999998752 11000124 789999999999999999995 975421
Q ss_pred cccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCC
Q 004774 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (731)
Q Consensus 322 ~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~ 401 (731)
....+.|..+||+++.++... ..+.++|+|++||||+ ++|+||+|+.+ |+..
T Consensus 88 ------~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~- 139 (424)
T PHA02820 88 ------LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT- 139 (424)
T ss_pred ------hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh-
Confidence 233466888999998542111 1246899999999999 99999999977 4422
Q ss_pred CCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeE--eChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccc
Q 004774 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479 (731)
Q Consensus 402 ~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i--~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~ 479 (731)
..+|+++.+ +||+|.+++..|.++|+..++.. ...|..
T Consensus 140 ------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--------~~~~~~-- 179 (424)
T PHA02820 140 ------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--------PYNWKN-- 179 (424)
T ss_pred ------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--------CCcccc--
Confidence 124777777 79999999999999998775321 000000
Q ss_pred hhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccch
Q 004774 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVID 559 (731)
Q Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e 559 (731)
..+ . . ++...+.. ....+....+++.+. |+... ....
T Consensus 180 -----~~~----~-~---------~~~~~p~~----~~~~~~~~~~~~sss--------P~~~~------------~~~r 216 (424)
T PHA02820 180 -----FYP----L-Y---------YNTDHPLS----LNVSGVPHSVFIASA--------PQQLC------------TMER 216 (424)
T ss_pred -----ccc----c-c---------cccCCCcc----cccCCccceEEEeCC--------Chhhc------------CCCC
Confidence 000 0 0 00000000 001111123444442 21100 0011
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
....++|+.+|.+||++|||++|||+|+... .+. .+.-...|..+|.+|. ++|||+|+||+|.+++. +.
T Consensus 217 ~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~----~~~--~~~yw~~i~~AL~~AA-~~RGV~VriLvp~~~d~----~~ 285 (424)
T PHA02820 217 TNDLTALLSCIRNASKFVYVSVMNFIPIIYS----KAG--KILFWPYIEDELRRAA-IDRKVSVKLLISCWQRS----SF 285 (424)
T ss_pred CchHHHHHHHHHHHhhEEEEEEccccceeec----cCC--cccchHHHHHHHHHHH-HhCCCEEEEEEeccCCC----Cc
Confidence 3457999999999999999999999998210 000 0011127888887532 56999999999998753 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEecc--C----CCCCCCCccccCCCceeeecccccccccccc
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLG--K----REEAPKDVLANNGDKMLGISFSNFFMRIEGS 713 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~--~----~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~ 713 (731)
+. .++..++++|+++|++ ++ +.+|... . ..+++|||+||+|+ ++.|||+|||.|||.+
T Consensus 286 ~~-----------~a~~~~l~~L~~~gv~--I~--Vk~y~~p~~~~~~~~~~f~HaK~~vvD~-~a~IGTsN~D~rsf~~ 349 (424)
T PHA02820 286 IM-----------RNFLRSIAMLKSKNIN--IE--VKLFIVPDADPPIPYSRVNHAKYMVTDK-TAYIGTSNWTGNYFTD 349 (424)
T ss_pred cH-----------HHHHHHHHHHhccCce--EE--EEEEEcCcccccCCcceeeeeeEEEEcc-cEEEECCcCCHHHHhc
Confidence 32 2234667889999986 32 2234221 0 24699999999996 7999999999999999
Q ss_pred ccceeEEEecc
Q 004774 714 QKCCHIHIFAN 724 (731)
Q Consensus 714 n~E~~~~i~~~ 724 (731)
|+|++++++++
T Consensus 350 n~ev~~~i~~~ 360 (424)
T PHA02820 350 TCGVSINITPD 360 (424)
T ss_pred cCcEEEEEecC
Confidence 99999999987
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=1e-39 Score=356.86 Aligned_cols=320 Identities=16% Similarity=0.202 Sum_probs=216.6
Q ss_pred chHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCC
Q 004774 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~ 321 (731)
..|++++++|++||++|+|++|+|. +++|. .| .+|.++|++||+|||+||||+ |+.|+
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~----~g--~~i~~aL~~aa~rGV~Vril~-D~~~~---------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTP----EG--RLILDKLKEAAESGVKVTILV-DEQSG---------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc----hH--HHHHHHHHHhccCCCeEEEEe-cCCCC----------
Confidence 5899999999999999999999842 12343 55 899999999999999999995 98753
Q ss_pred cccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCC
Q 004774 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (731)
Q Consensus 322 ~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~ 401 (731)
+...+.|+.+||+++..+. +. + +....+|+|++||||+ +||+||+||+++|+..
T Consensus 89 ------~~~~~~L~~~Gv~v~~~~~-~~--~--------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~- 142 (369)
T PHA03003 89 ------DKDEEELQSSNINYIKVDI-GK--L--------NNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST- 142 (369)
T ss_pred ------CccHHHHHHcCCEEEEEec-cc--c--------CCCCceeeeEEEEcCc--------EEEEecCccCCcccCc-
Confidence 2345678889999874321 10 0 0012348899999999 9999999999955532
Q ss_pred CCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccchh
Q 004774 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLI 481 (731)
Q Consensus 402 ~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~~~~l~ 481 (731)
. ...+.|+|. ||+|.+|+..|.+.|+.+++.. . ..
T Consensus 143 ~-------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~-~--------------~~ 177 (369)
T PHA03003 143 I-------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKS-V--------------FN 177 (369)
T ss_pred c-------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCC-c--------------cc
Confidence 1 224689994 9999999999999998765432 0 00
Q ss_pred hccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhH
Q 004774 482 KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 561 (731)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~s 561 (731)
.. ...+. .|... .. . ...+ ...+++.+ + |+.... .....
T Consensus 178 ~~-~~~~~--------------~~~~~--~~-~-~~~~--~~~~~~~s---~-----P~~~~~------------~~~~~ 216 (369)
T PHA03003 178 RL-CCACC--------------LPVST--KY-H-INNP--IGGVFFSD---S-----PEHLLG------------YSRTL 216 (369)
T ss_pred cc-ccccC--------------Ccccc--cc-c-ccCC--CcceEEec---C-----ChHHcC------------CCCCc
Confidence 00 00000 00000 00 0 0000 01123333 2 321100 01235
Q ss_pred HHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHH
Q 004774 562 IQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQ 641 (731)
Q Consensus 562 I~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~ 641 (731)
++++|+.+|.+||++|+|++|||+|.... +. .-.....|..+|.+|. ++|||+|+||+|.....+ ..
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~-----d~--~~~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~---~~-- 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIRE-----DD--KTTYWPDIYNALIRAA-INRGVKVRLLVGSWKKND---VY-- 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEee-----CC--CCccHHHHHHHHHHHH-HcCCCEEEEEEecCCcCC---ch--
Confidence 78999999999999999999999986311 00 0011237788887762 379999999999853221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeEEE
Q 004774 642 EILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHI 721 (731)
Q Consensus 642 ~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i 721 (731)
..++++.|+++|++ +.-.+.+|.. .+|+|++||||++++|||+|+|.||+..|.|+++.+
T Consensus 284 -------------~~~~~~~L~~~G~~--~~i~vri~~~-----~~H~K~~VVD~~~a~iGS~N~d~~s~~~~~e~~~~~ 343 (369)
T PHA03003 284 -------------SMASVKSLQALCVG--NDLSVKVFRI-----PNNTKLLIVDDEFAHITSANFDGTHYLHHAFVSFNT 343 (369)
T ss_pred -------------hhhHHHHHHHcCCC--CCceEeeecC-----CCCceEEEEcCCEEEEeccccCchhhccCCCeEEec
Confidence 13567889999964 2222345543 179999999999999999999999999999999998
Q ss_pred ecccccC
Q 004774 722 FANSFLG 728 (731)
Q Consensus 722 ~~~~~~~ 728 (731)
.++++++
T Consensus 344 ~~~~~a~ 350 (369)
T PHA03003 344 IDKELVK 350 (369)
T ss_pred CChhHHH
Confidence 8887754
No 13
>PRK05443 polyphosphate kinase; Provisional
Probab=99.91 E-value=4.1e-23 Score=238.80 Aligned_cols=268 Identities=15% Similarity=0.153 Sum_probs=199.8
Q ss_pred chHHHHHHHHHhccc-----EEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccC
Q 004774 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~ 316 (731)
+.|..+++.|++|.+ +|.++-|.+.. ..++.++|++||++||+|+||+ +.-.-+.
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~karfd--- 407 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKARFD--- 407 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCcccc---
Confidence 568899999999998 99999998742 2689999999999999999998 6432110
Q ss_pred ccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
...+..+.+.|+.+||+|.+ .++ .+..|.|+++||++..+ .-+.+|++|+.|+...
T Consensus 408 -------e~~n~~~~~~L~~aGv~V~y--~~~--------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~ 463 (691)
T PRK05443 408 -------EEANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPK 463 (691)
T ss_pred -------HHHHHHHHHHHHHcCCEEEE--ccC--------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcc
Confidence 11134567789999999974 222 23569999999997333 2334899999999883
Q ss_pred CCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEe-ChHHHHHHHHHHHHHHhhcccchhhhhhcccccc
Q 004774 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD-GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (731)
Q Consensus 397 r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~-Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~ 475 (731)
. ...|+|+.+... +..+.++...|...|.......
T Consensus 464 -s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~------------ 499 (691)
T PRK05443 464 -T-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK------------ 499 (691)
T ss_pred -h-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc------------
Confidence 2 135789999955 4589999999999875421100
Q ss_pred cccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhcccc
Q 004774 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555 (731)
Q Consensus 476 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~ 555 (731)
+ -.++-+ |..
T Consensus 500 ----------~-------------------------------------~~l~~s---------P~~-------------- 509 (691)
T PRK05443 500 ----------L-------------------------------------RKLLVS---------PFT-------------- 509 (691)
T ss_pred ----------c-------------------------------------cEEeec---------Ccc--------------
Confidence 0 001111 221
Q ss_pred ccchhHHHHHHHHHHHhccc----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe----
Q 004774 556 VVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII---- 627 (731)
Q Consensus 556 ~~~e~sI~~ayl~~I~~Ak~----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~Ivl---- 627 (731)
....+.+.+...|.+||+ +|+|.++| +|+. .+..+|..| +.+||+|.|++
T Consensus 510 --~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d~-----------------~ii~aL~~A--s~~GV~V~liVRGiC 567 (691)
T PRK05443 510 --LRERLLELIDREIANARAGKPARIIAKMNS-LVDP-----------------QIIDALYEA--SQAGVKIDLIVRGIC 567 (691)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEEeccc
Confidence 136788999999999999 99999999 5564 788999999 77999999999
Q ss_pred ------cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeee
Q 004774 628 ------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGI 701 (731)
Q Consensus 628 ------P~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~v 701 (731)
|+.++ +..| .+++..|+++ ++ |+.|.. + ||++++|
T Consensus 568 ~l~pgipg~sd----~i~v---------------~s~v~r~Leh-~r------Iy~f~~----g---------d~~~~~i 608 (691)
T PRK05443 568 CLRPGVPGLSE----NIRV---------------RSIVGRFLEH-SR------IYYFGN----G---------GDEEVYI 608 (691)
T ss_pred ccCCCCCCCCC----CEEE---------------HHHHHHHHhc-CE------EEEEeC----C---------CCcEEEE
Confidence 66654 3433 2677888884 54 444432 2 9999999
Q ss_pred ccccccccccccccceeEEEecccccC
Q 004774 702 SFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 702 GS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
||||+|.|||.+|+|+++.|+|+.+.+
T Consensus 609 GSAn~d~Rsl~~r~Ev~~~i~d~~~~~ 635 (691)
T PRK05443 609 SSADWMPRNLDRRVEVLFPILDPRLKQ 635 (691)
T ss_pred ECCCCCcccccceEEEeEEEeCHHHHH
Confidence 999999999999999999999998764
No 14
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.90 E-value=7.5e-23 Score=235.20 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=195.4
Q ss_pred chHHHHHHHHHhccc-----EEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeC---CCCccC
Q 004774 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD---DKTSHD 313 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D---~~gs~~ 313 (731)
+.|+.+++.|++|.+ +|.|+.|.+.. ..++.++|++||++|++|++|| + -++..
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfde~- 400 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFDEE- 400 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhccch-
Confidence 568899999999997 99999998741 2689999999999999999998 6 22221
Q ss_pred ccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccC
Q 004774 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (731)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI 393 (731)
.+-.+.+.|+.+|++|.+ ..+ .++.|+|+++||.+..+. -+..+++|.-|.
T Consensus 401 ------------~ni~wa~~le~aG~~viy--g~~--------------~~k~H~K~~li~r~~~~~-~~~y~~igTgN~ 451 (672)
T TIGR03705 401 ------------ANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREGGE-LRRYVHLGTGNY 451 (672)
T ss_pred ------------hhHHHHHHHHHcCCEEEE--cCC--------------CeeeeeEEEEEEEeeCCc-eEEEEEecCCCC
Confidence 134567789999999984 122 357799999999862221 122455554444
Q ss_pred CCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeee-EeChHHHHHHHHHHHHHHhhcccchhhhhhccc
Q 004774 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKRV 472 (731)
Q Consensus 394 ~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~-i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~ 472 (731)
... -...|+|+++. ..+..+.|+...|...|.......
T Consensus 452 n~~--------------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~--------- 490 (672)
T TIGR03705 452 HPK--------------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK--------- 490 (672)
T ss_pred CCc--------------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh---------
Confidence 331 12469999999 888899999999998875321110
Q ss_pred ccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhc
Q 004774 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (731)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~ 552 (731)
.. +++ + + |..
T Consensus 491 -------------~~-------------------------------------~l~-~---~-----P~~----------- 500 (672)
T TIGR03705 491 -------------FK-------------------------------------HLL-V---S-----PFT----------- 500 (672)
T ss_pred -------------hH-------------------------------------HHH-h---C-----cch-----------
Confidence 00 000 0 1 221
Q ss_pred cccccchhHHHHHHHHHHHhccc----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-
Q 004774 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII- 627 (731)
Q Consensus 553 ~~~~~~e~sI~~ayl~~I~~Ak~----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~Ivl- 627 (731)
.+..+.+.+...|.+||+ +|+|.+|| +|+. .|..+|..| +.+||+|++++
T Consensus 501 -----~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D~-----------------~ii~aL~~A--s~aGV~V~LivR 555 (672)
T TIGR03705 501 -----LRKRLLELIDREIENARAGKPARIIAKMNS-LVDP-----------------DLIDALYEA--SQAGVKIDLIVR 555 (672)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEEe
Confidence 246688899999999999 99999999 5564 789999999 77999999999
Q ss_pred ---------cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCce
Q 004774 628 ---------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKM 698 (731)
Q Consensus 628 ---------P~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~ 698 (731)
|+.++ +..| .+++..+++ |++ |+.|.. + ||++
T Consensus 556 GiCcL~pgipg~sd----~i~v---------------~siv~r~Le-h~r------Iy~f~~----~---------~d~~ 596 (672)
T TIGR03705 556 GICCLRPGVPGLSE----NIRV---------------RSIVGRFLE-HSR------IYYFGN----G---------GEEK 596 (672)
T ss_pred cccccCCCCCCCCC----CEEE---------------EEEhhHhhC-cCE------EEEEeC----C---------CCcE
Confidence 66654 3333 267778888 775 444432 2 7889
Q ss_pred eeeccccccccccccccceeEEEecccccC
Q 004774 699 LGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 699 ~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
++|||||||.|||..|.|+++.|+|+.+.+
T Consensus 597 ~~igSAn~m~Rnl~~r~E~~~~i~d~~~~~ 626 (672)
T TIGR03705 597 VYISSADWMTRNLDRRVEVLFPIEDPTLKQ 626 (672)
T ss_pred EEEECCCCCCCcccceEEEEEEEcCHHHHH
Confidence 999999999999999999999999998764
No 15
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.89 E-value=1.8e-22 Score=195.26 Aligned_cols=157 Identities=50% Similarity=0.803 Sum_probs=133.1
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
.+++||+|+|+|++|++|++||+.+.++++|+.++..|...... .+. -......+++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK---RPS---------SHRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc---ccc---------ccccCCCCCcCeEEEEEECCe
Confidence 46899999999999999999999888889998877655443210 000 001124456999999999987
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCCCc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g 171 (731)
++++|++++++.||+|||+|.|.+.+....|.|+|||.+.+++++||++.+|+.++..+...+.|++|.+..+++.+..|
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988888899999999999999999999999999988889999999888888888889
Q ss_pred eEEEEEEEe
Q 004774 172 SIQLELKFT 180 (731)
Q Consensus 172 ~L~lsl~y~ 180 (731)
+|+++++|+
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999985
No 16
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=1.5e-19 Score=166.41 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=101.7
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|+|+|++|++++..+ .+. +||||+|.+++++ .+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~-~kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAV-YET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEE-EEe
Confidence 89999999999988655 444 9999999998877 499
Q ss_pred ccccC-CCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccc-cccCCceeEEEEEccCCCCCCCCCCceE
Q 004774 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (731)
Q Consensus 97 ~v~~~-~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~-~~~~~~~~~~w~~l~~~~~~~~~~~g~L 173 (731)
++..+ +.||+|||+|.|.+.+....|.|+|||+|.++ +++||.+.+++. .+..++..+.||+|....++ ...|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence 99876 89999999999999887778999999999998 899999999995 57778888999999654443 357999
Q ss_pred EEEEEE
Q 004774 174 QLELKF 179 (731)
Q Consensus 174 ~lsl~y 179 (731)
+|+|+|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999987
No 17
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.77 E-value=5.7e-18 Score=160.25 Aligned_cols=128 Identities=23% Similarity=0.459 Sum_probs=112.6
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
...+...|.|.|++|++|+.+ .+|||+|.|+++
T Consensus 6 ~~R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~ 38 (146)
T cd04013 6 SRRTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKT 38 (146)
T ss_pred ceEEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCE
Confidence 346778899999999999862 479999999999
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcC-CC----CCceeEEEecccccccCCceeEEEEEccCCCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD-VF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~-~~----~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (731)
.++||+++.++.+|.|+|+|.|...++...+.|.|+..+ .. ++++||.+.||+.++..+...++||+|+...+++
T Consensus 39 ~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 39 LYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred EEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 999999999999999999999999888889999996543 33 4799999999999999999999999998887776
Q ss_pred -------CCCCceEEEEEEEeecCCCC
Q 004774 167 -------PKPGASIQLELKFTPCDKNP 186 (731)
Q Consensus 167 -------~~~~g~L~lsl~y~p~~~~p 186 (731)
....+.|+++++|.+....|
T Consensus 119 ~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 119 KSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccccCCCCEEEEEEEEEEeeeCC
Confidence 56779999999999987655
No 18
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=4.4e-18 Score=157.73 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=101.1
Q ss_pred EEEEEEEeeC---CCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 19 L~v~i~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
|+|+|++|++ |+.+|..+. +||||+|.+++++ .|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence 8999999999 776665554 9999999998876 59
Q ss_pred eccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCC-------CCceeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~-------~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (731)
|++++++.||+|||+|.|.+..+...|.|+|||++.+ ++++||++.+++.++..+...+.||+|.+.++++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999988878899999999887 699999999999999989889999999876656667
Q ss_pred CCceEEE
Q 004774 169 PGASIQL 175 (731)
Q Consensus 169 ~~g~L~l 175 (731)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 7888875
No 19
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=5.9e-18 Score=156.49 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=106.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|.|+|++|++|+..+..+. +||||++.+.+....+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 38999999999998776554 999999999886778999
Q ss_pred cccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 004774 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~ls 176 (731)
++.++.||+|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..++..+.|++|.+..+ .+..|+|.+.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence 999999999999999999877788999999999985 9999999999999998888999999965543 2468999999
Q ss_pred EEEee
Q 004774 177 LKFTP 181 (731)
Q Consensus 177 l~y~p 181 (731)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99986
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.77 E-value=3.9e-18 Score=158.90 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=100.6
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~v 98 (731)
++|+|++|+||+.++..+. +||||+|.+++.+ .+|++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 5799999999998776554 9999999998765 69999
Q ss_pred ccCCCCCeEeeEEEEeecC------CCCeEEEEEEEcCCCC-CceeEEEeccccccc--CCceeEEEEEccCCCCCCCCC
Q 004774 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (731)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~------~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~--~~~~~~~w~~l~~~~~~~~~~ 169 (731)
++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.|++.++. .+.....||+|....+++.+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999877 3567999999999887 899999999999987 566788999996555555567
Q ss_pred CceEEEEEE
Q 004774 170 GASIQLELK 178 (731)
Q Consensus 170 ~g~L~lsl~ 178 (731)
.|+|+++++
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999873
No 21
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=3.5e-17 Score=152.47 Aligned_cols=121 Identities=21% Similarity=0.407 Sum_probs=101.6
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
...|+|+|++|++|+..+ . +||||+|.+++....+
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---~------------------------------------------~DPYv~v~l~~~~~~k 37 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---V------------------------------------------PHPYCVISLNEVKVAR 37 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---C------------------------------------------CCeeEEEEECCEeEEE
Confidence 356999999999998632 2 8999999998877789
Q ss_pred eccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceE
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L 173 (731)
|+++ ++.||.|||.|.|.+..+. ..++|.|+|.+..+ +++||++.+||.++..+...+.||+|.....++.+..|+|
T Consensus 38 T~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i 116 (126)
T cd08400 38 TKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSL 116 (126)
T ss_pred eecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEE
Confidence 9985 5899999999999966553 56899999998887 8999999999999998888899999965433344668999
Q ss_pred EEEEEEeec
Q 004774 174 QLELKFTPC 182 (731)
Q Consensus 174 ~lsl~y~p~ 182 (731)
+|+++|.+.
T Consensus 117 ~l~l~~~~~ 125 (126)
T cd08400 117 RIRARYSHE 125 (126)
T ss_pred EEEEEEEcc
Confidence 999999873
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.74 E-value=2.2e-17 Score=152.61 Aligned_cols=99 Identities=25% Similarity=0.442 Sum_probs=87.0
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (731)
+||||.|.+.....++|+++++|.||+|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+...+.||+
T Consensus 22 sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 101 (121)
T cd08401 22 RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP 101 (121)
T ss_pred cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence 899999999877678999999999999999999999877778999999999986 8999999999999987778899999
Q ss_pred ccCCCCCCCCCCceEEEEEEE
Q 004774 159 IIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 159 l~~~~~~~~~~~g~L~lsl~y 179 (731)
|. +.+...+..|+|+|+++|
T Consensus 102 L~-~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 102 LQ-PVDADSEVQGKVHLELRL 121 (121)
T ss_pred EE-ccCCCCcccEEEEEEEEC
Confidence 94 433333458999999875
No 23
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=5.9e-17 Score=151.13 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|.|+|++|++|+..+..+. +||||+|.+.+++ .+|+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998775554 8999999998866 6999
Q ss_pred cccCCCCCeEeeEEEEeecCCC----CeEEEEEEEcCCC--CCceeEEEeccccccc-CCceeEEEEEccCCCCCCCCCC
Q 004774 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~----~~l~~~v~d~~~~--~~~~iG~~~i~l~~~~-~~~~~~~w~~l~~~~~~~~~~~ 170 (731)
+++++.||+|||.|.|.+..+. ..|.|+|||.+.+ ++++||++.+++.++. .++....||+|. ..+...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999988643 4689999999887 5899999999999997 567778999994 444333568
Q ss_pred ceEEEEEEEe
Q 004774 171 ASIQLELKFT 180 (731)
Q Consensus 171 g~L~lsl~y~ 180 (731)
|+|.|++.++
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999886
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=3.8e-17 Score=150.29 Aligned_cols=116 Identities=26% Similarity=0.507 Sum_probs=99.6
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|+|+|++|++|+..+..+. +||||+|.+++.. .+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 789999999999998776554 9999999998754 689
Q ss_pred ccccC-CCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004774 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (731)
Q Consensus 97 ~v~~~-~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~ 174 (731)
+++.+ +.||+|||.|.|.+..+ ...|.|+|||++..++++||++.+++.++..+.....|++|.. .+ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence 88754 79999999999999875 4679999999998889999999999999877777789999953 33 4689999
Q ss_pred EEEEE
Q 004774 175 LELKF 179 (731)
Q Consensus 175 lsl~y 179 (731)
++++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99986
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=1.3e-16 Score=148.58 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=90.3
Q ss_pred CCcEEEEEECC-eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEE
Q 004774 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (731)
Q Consensus 80 ~d~yv~v~l~~-~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~ 157 (731)
+||||++.++. ....+|++++++.||+|||.|.|.+......|.|+|||.+..+ +++||++.+++.++..+.....|+
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 99999999975 3457999999999999999999999877778999999999987 899999999999999877788999
Q ss_pred EccCCCCCCCCCCceEEEEEEEeecCC
Q 004774 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (731)
Q Consensus 158 ~l~~~~~~~~~~~g~L~lsl~y~p~~~ 184 (731)
+|....+...+..|+|.+++.|.+.+.
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 995333323456899999999988654
No 26
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=1.2e-16 Score=153.15 Aligned_cols=122 Identities=26% Similarity=0.395 Sum_probs=103.4
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|+|+|++|++|++++..+. +||||+|.++++. .+|+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk 37 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTR 37 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeE
Confidence 38999999999998887665 9999999999854 6999
Q ss_pred cccC-CCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCC----ceeEEEEEccCCCC-----C
Q 004774 98 VLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----S 165 (731)
Q Consensus 98 v~~~-~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~----~~~~~w~~l~~~~~-----~ 165 (731)
+..+ +.||+|||+|.|.+..+ ...+.|+|+|.+..+ +++||++.++|.++..+ ...+.||+|.+..+ +
T Consensus 38 ~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k 117 (150)
T cd04019 38 PSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKK 117 (150)
T ss_pred eccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccc
Confidence 9877 69999999999999765 457899999998875 89999999999998643 45689999976654 4
Q ss_pred CCCCCceEEEEEEEeec
Q 004774 166 PPKPGASIQLELKFTPC 182 (731)
Q Consensus 166 ~~~~~g~L~lsl~y~p~ 182 (731)
+.+..|+|+|.+.|.+.
T Consensus 118 ~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 118 KRKFASRIHLRLCLDGG 134 (150)
T ss_pred cCcccccEEEEEEecCc
Confidence 55678999999999864
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=1.6e-16 Score=146.85 Aligned_cols=98 Identities=24% Similarity=0.442 Sum_probs=83.9
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCCCceeEEEecccccccCCc-----ee
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGE-----LI 153 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~-----~~ 153 (731)
+||||++.+++. ..+|++++++.||+|||+|.|.+... ...|.|+|||++..++++||++.+++.++.... ..
T Consensus 17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 899999999875 47999999999999999999998774 567999999999888999999999999987432 35
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEe
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLELKFT 180 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl~y~ 180 (731)
..||+|.+..+ .+..|+|.|+++|-
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEec
Confidence 68999965543 35789999999984
No 28
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=8.3e-16 Score=140.90 Aligned_cols=112 Identities=26% Similarity=0.387 Sum_probs=99.0
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~v 98 (731)
|+|+|++|++|+..+..+. +||||++.+.+.. .+|++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~v 38 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSKV 38 (116)
T ss_pred EEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eeccc
Confidence 7899999999998776554 8999999998755 79999
Q ss_pred ccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 004774 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (731)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~ls 176 (731)
++++.||.|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++..++..+.|++|. + ..|+|.+.
T Consensus 39 ~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~-~------~~G~~~~~ 111 (116)
T cd08376 39 CSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE-D------GEGSLLLL 111 (116)
T ss_pred ccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEcc-C------CCcEEEEE
Confidence 99999999999999998876 577999999999986 899999999999999888899999993 2 25999999
Q ss_pred EEEe
Q 004774 177 LKFT 180 (731)
Q Consensus 177 l~y~ 180 (731)
+.|+
T Consensus 112 ~~~~ 115 (116)
T cd08376 112 LTLT 115 (116)
T ss_pred EEec
Confidence 8875
No 29
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.68 E-value=4.8e-16 Score=143.79 Aligned_cols=117 Identities=25% Similarity=0.514 Sum_probs=99.3
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~v 98 (731)
|.|+|++|++|++++..+. +||||++.+++..+.+|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 8999999999998886664 8999999998877789999
Q ss_pred ccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 004774 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (731)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~-~~~~~w~~l~~~~~~~~~~~g~L~ls 176 (731)
++++.||+|||.|.|.+.+....|.|+|||++.++ +++||++.++++++..+ ...+.|++|.. .+......|+|++.
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~-~~~~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE-VDPDEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECee-eCCCCccccEEEEE
Confidence 99999999999999999877788999999999987 89999999999988753 34778999943 22222457999888
Q ss_pred EE
Q 004774 177 LK 178 (731)
Q Consensus 177 l~ 178 (731)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 30
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.5e-16 Score=146.97 Aligned_cols=120 Identities=22% Similarity=0.412 Sum_probs=100.6
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe------
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~------ 91 (731)
.|+|+|++|++|+.++..+. +||||+|.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 38999999999998776654 899999999653
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCce------eEEEEEccCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~------~~~w~~l~~~~~ 164 (731)
...+|++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.+++.++..+.. ...||+|. +..
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRS 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecC
Confidence 246999999999999999999999877778999999999987 8999999999999985543 45899995 333
Q ss_pred CCCCCCceEEEEEEEe
Q 004774 165 SPPKPGASIQLELKFT 180 (731)
Q Consensus 165 ~~~~~~g~L~lsl~y~ 180 (731)
+..+..|+|++++.|.
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 3335689999999984
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.68 E-value=7e-16 Score=141.94 Aligned_cols=117 Identities=31% Similarity=0.542 Sum_probs=100.3
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|.|+|++|++|+..+..+. +||||+|.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998776554 8999999998765 699
Q ss_pred ccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~l 175 (731)
++++++.||.|||+|.|.+......+.|+|||++... +++||++.+++.++..+. ..|++|..... ..+..|+|.+
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEE
Confidence 9999999999999999999876778999999999875 899999999999987553 58999964433 3356899999
Q ss_pred EEEE
Q 004774 176 ELKF 179 (731)
Q Consensus 176 sl~y 179 (731)
++.+
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9876
No 32
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.68 E-value=2.3e-16 Score=175.20 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=109.6
Q ss_pred CCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCC
Q 004774 520 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 599 (731)
Q Consensus 520 ~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~ 599 (731)
..|.++++.|+|.+- .|+. .-.+.+++++.+|.+||++|+|++|||+|+.. .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~---------~ 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDE---------V 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCcc---------c
Confidence 346789999986552 2211 12578999999999999999999999997531 0
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEe
Q 004774 600 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC 679 (731)
Q Consensus 600 ~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~ 679 (731)
....+..+..+|.+| +++||+|+|+++.. + .+ ..+++.|+++||+ +..|.
T Consensus 56 ~~~~G~~i~~aL~~a--A~rGV~VRIL~d~~-~----~~-----------------~~~~~~L~~aGv~------v~~~~ 105 (424)
T PHA02820 56 GTNFGTMILNEIIQL--PKRGVRVRIAVNKS-N----KP-----------------LKDVELLQMAGVE------VRYID 105 (424)
T ss_pred cchhHHHHHHHHHHH--HHCCCEEEEEECCC-C----Cc-----------------hhhHHHHHhCCCE------EEEEe
Confidence 112235788999888 67999999999953 1 11 1234679999997 33332
Q ss_pred cc-CCCCCCCCccccCCCceeeeccccccccccccccceeEEEec
Q 004774 680 LG-KREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFA 723 (731)
Q Consensus 680 ~~-~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~ 723 (731)
.. ...+++|+|++|||+++++|||+|+|.||+..|.|+++.+.+
T Consensus 106 ~~~~~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n~E~gv~i~~ 150 (424)
T PHA02820 106 ITNILGGVLHTKFWISDNTHIYLGSANMDWRSLTQVKELGIAIFN 150 (424)
T ss_pred cCCCCcccceeeEEEECCCEEEEeCCcCChhhhhhCCceEEEEec
Confidence 11 123679999999999999999999999999999999999875
No 33
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.67 E-value=2.2e-16 Score=143.49 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=87.8
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
.....+.|+|+|++|++|+ . .+. +||||+|.+..
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~ 43 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVS 43 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCC
Confidence 3456789999999999998 2 233 89999999953
Q ss_pred --eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 --~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
..+.+|+|+++|.||+|||+|.|.++.. ...|.|+|||.|.++ +++||++.++++++..+...++|..|
T Consensus 44 ~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 44 EGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 2457999999999999999999998874 466999999999998 99999999999998777778888764
No 34
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=3.6e-16 Score=144.77 Aligned_cols=105 Identities=25% Similarity=0.490 Sum_probs=91.0
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
..|-.+.|.|+|++|++|+.++ .+. +||||+|.+.+
T Consensus 8 l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~~ 44 (122)
T cd08381 8 ISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLPD 44 (122)
T ss_pred EEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEeeC
Confidence 3455899999999999999887 554 99999999953
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEee-cC---CCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~-~~---~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
..+.||++++++.||+|||+|.|++ +. ....|.|+|||++.++ +++||++.++|.++..++....||+|
T Consensus 45 ~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 45 PQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3457999999999999999999997 32 3467899999999987 89999999999999988888899987
No 35
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.67 E-value=1.1e-15 Score=143.61 Aligned_cols=127 Identities=24% Similarity=0.458 Sum_probs=102.5
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
+.|.|+|+|++|++|+..+..+.. + .++...+.+||||++.+++....
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~--------------------~------------~~~~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH--------------------A------------VPKKGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh--------------------c------------ccccCccCcCcEEEEEECCEEEe
Confidence 468999999999999876643210 0 00000134899999999987778
Q ss_pred eeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccC--CceeEEEEEccCCCCCCCCCCc
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~--~~~~~~w~~l~~~~~~~~~~~g 171 (731)
+|++++++.+|.|||+|.|.+. ....+.|.|++++.++ +++||++.++|.++.. +...+.|++|. +.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence 9999999999999999999997 4578999999998876 8999999999999986 56788999992 369
Q ss_pred eEEEEEEEeec
Q 004774 172 SIQLELKFTPC 182 (731)
Q Consensus 172 ~L~lsl~y~p~ 182 (731)
+|++.+.|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998763
No 36
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=6e-16 Score=143.36 Aligned_cols=121 Identities=31% Similarity=0.460 Sum_probs=100.0
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-eeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~-~~~~~ 95 (731)
|.|+|+|++|++|+..+..+. .+||||++.+.+ ....+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999986443221 289999999988 56789
Q ss_pred eccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~ 174 (731)
|++++++.+|.|||.|.|.+......|.|+|||.+..+ +++||.+.+++.++..+.....|...+...+ +..|+|+
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~---k~~G~i~ 117 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG---KPVGELN 117 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCC---ccceEEE
Confidence 99999999999999999999866788999999999886 8999999999999986666554433334444 3579999
Q ss_pred EEEEEee
Q 004774 175 LELKFTP 181 (731)
Q Consensus 175 lsl~y~p 181 (731)
++++|.|
T Consensus 118 ~~l~~~p 124 (124)
T cd04044 118 YDLRFFP 124 (124)
T ss_pred EEEEeCC
Confidence 9999987
No 37
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.66 E-value=8.8e-16 Score=143.10 Aligned_cols=120 Identities=22% Similarity=0.421 Sum_probs=99.9
Q ss_pred cEEEEEEEEeeCCCCCCC--CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
|.|.|+|++|++|+..+. .+. +||||+|.++... .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 689999999999998765 443 8999999997755 7
Q ss_pred eeccccCCCCCeEeeEEEEeecC-CCCeEEEEEEEcCCCC-CceeEEEecccccccC---CceeEEEEEccCCC-CCCCC
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPS-GSPPK 168 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~-~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l~~~~-~~~~~ 168 (731)
+|++++++.+|.|||.|.|.+.. ....|.|+|||++..+ +++||++.+++.++.. ......||+|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4678999999999885 8999999999999873 34467899995442 22234
Q ss_pred CCceEEEEEEE
Q 004774 169 PGASIQLELKF 179 (731)
Q Consensus 169 ~~g~L~lsl~y 179 (731)
..|+|+|.+.|
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 68999999874
No 38
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.66 E-value=1.1e-15 Score=140.96 Aligned_cols=113 Identities=27% Similarity=0.528 Sum_probs=96.8
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eeeeee
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~~~~T 96 (731)
|.|+|++|++|+..+..+. +||||++.+.+ ....+|
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999998765443 99999999964 355799
Q ss_pred ccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~l 175 (731)
++++++.||+|||+|.|.+.... ..|.|+|||++.+++++||++.+++.++..+.....|++| .+. ..|+|.+
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~~-----~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NPQ-----GKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CCC-----CCceEEE
Confidence 99999999999999999987753 4589999999988889999999999999989899999999 332 3688888
Q ss_pred EEEE
Q 004774 176 ELKF 179 (731)
Q Consensus 176 sl~y 179 (731)
.+.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 8764
No 39
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=1.1e-15 Score=145.08 Aligned_cols=108 Identities=20% Similarity=0.399 Sum_probs=91.9
Q ss_pred eeeccEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 13 IYLHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
.|..|.|.|+|++|+||++++ ..+. +||||++++..
T Consensus 25 ~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp~ 62 (146)
T cd04028 25 YDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLEG 62 (146)
T ss_pred EeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEECC
Confidence 467899999999999998764 2333 89999999943
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEE-EcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~-d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
..+.||++++++.||+|||+|.|.+......|.|+|| +.+.+. +++||++.|+|+.+..+.....||+|...
T Consensus 63 ~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 63 KKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2357999999999999999999999866778999999 567776 89999999999999878888899999643
No 40
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.65 E-value=1.6e-15 Score=139.92 Aligned_cols=120 Identities=27% Similarity=0.466 Sum_probs=98.5
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|+|+|++|++|+..+.... | ...+.+||||+|.+++ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~--------------------------~----------~~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG--------------------------G----------LVKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCcccccccc--------------------------c----------CCCCCcCCEEEEEECC-EeEEc
Confidence 679999999999998664210 0 0012389999999988 45899
Q ss_pred ccccCCCCCeEeeEEEEeecC-CCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004774 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~-~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~l 175 (731)
++++++.+|+|||+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+...+.||+|.+. ..|+|++
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 457899999999988889999999999999877778899999422 4699999
Q ss_pred EEEE
Q 004774 176 ELKF 179 (731)
Q Consensus 176 sl~y 179 (731)
.++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 8764
No 41
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=5.1e-16 Score=143.04 Aligned_cols=106 Identities=18% Similarity=0.343 Sum_probs=90.4
Q ss_pred eeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004774 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (731)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~ 90 (731)
...+-++.|.|+|++|+||++++ .+. +||||++.+.+
T Consensus 6 ~~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p 42 (119)
T cd08685 6 SIEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSP 42 (119)
T ss_pred EEEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEe
Confidence 34567899999999999999876 443 89999999954
Q ss_pred ----eeeeeeccccCCCCCeEeeEEEEeecCCC--CeEEEEEEEcCCCC--CceeEEEecccccccCCceeEEEEEc
Q 004774 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 ----~~~~~T~v~~~~~~P~wne~f~~~~~~~~--~~l~~~v~d~~~~~--~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
....||++++++.+|+|||+|.|.+.... ..|.|+||+++... +++||.+.|++.++..++..+.||.|
T Consensus 43 ~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 43 DKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 34569999999999999999999987642 46889999998764 68999999999999888888999986
No 42
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=9.8e-16 Score=140.83 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=85.4
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC-----C-e
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~-----~-~ 91 (731)
.|+|+|++|++|+..+. |. +||||+|++. . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 48999999999987653 43 8999999983 2 2
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEcc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (731)
.+.+|+++.++.||+|||+|.|.+... ...|.|.|+|++..+ +++||++.+|+.++..+.....|++|.
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 346899999999999999999999753 245899999999887 899999999999999888889999993
No 43
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.64 E-value=2.2e-15 Score=139.69 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=98.3
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|+|+|++|++|+.++..+. +||||+|.+++.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 38999999999998776554 8999999998755 6999
Q ss_pred cccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC---CCCCCce
Q 004774 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~---~~~~~g~ 172 (731)
+++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+...+.||.|.....+ ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 999999999999999998875 467999999999887 89999999999999877777899999642222 2356788
Q ss_pred EEEEEE
Q 004774 173 IQLELK 178 (731)
Q Consensus 173 L~lsl~ 178 (731)
|.+.++
T Consensus 118 l~~~~~ 123 (123)
T cd04025 118 LRLKVR 123 (123)
T ss_pred EEEEeC
Confidence 888763
No 44
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.63 E-value=4.7e-15 Score=139.91 Aligned_cols=115 Identities=23% Similarity=0.385 Sum_probs=96.5
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
-|.|.|+|++|++|+..+..+. +||||++.++... .+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~k 50 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HK 50 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-ee
Confidence 4889999999999998876654 9999999997755 79
Q ss_pred eccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccC-----CceeEEEEEccCCCCCCCC
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPK 168 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~-----~~~~~~w~~l~~~~~~~~~ 168 (731)
|++++++.||.|||+|.|.+.... ..|.|+|||++.++ +++||++.+++.++.. ......|..+ . + .
T Consensus 51 T~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-~--~---~ 124 (136)
T cd08375 51 TKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-H--E---V 124 (136)
T ss_pred ccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-c--c---c
Confidence 999999999999999999997654 56899999999887 8999999999999875 3334456666 1 1 3
Q ss_pred CCceEEEEEEE
Q 004774 169 PGASIQLELKF 179 (731)
Q Consensus 169 ~~g~L~lsl~y 179 (731)
..|+|++++.+
T Consensus 125 ~~g~i~l~~~~ 135 (136)
T cd08375 125 PTGEVVVKLDL 135 (136)
T ss_pred cceeEEEEEEe
Confidence 57999999986
No 45
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=5.7e-15 Score=137.69 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=90.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~ 155 (731)
+||||+|.+.+.+ .+|++++++.+|+|||+|.|.+... ...|.|+|||++..+ +++||++.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998765 6999999999999999999998764 567999999999886 8999999999999998888889
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEeecCCC
Q 004774 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (731)
Q Consensus 156 w~~l~~~~~~~~~~~g~L~lsl~y~p~~~~ 185 (731)
|++|.+..+++ ..|+|+++++|.|.+.+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99997665543 46899999999997653
No 46
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.62 E-value=1.3e-14 Score=135.24 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=101.6
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
+..|+|+|++|++|+..+..+. +||||++.+++.. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 4679999999999998776554 9999999998865 69
Q ss_pred eccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCC-CCCCCCCceEE
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~-~~~~~~~g~L~ 174 (731)
|++++++.+|+|||.|.|.+......|.|+|||++..++++||.+.+++.++.. ....|++|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999988888889999999999889999999999987643 345788884221 12335689999
Q ss_pred EEEEEeec
Q 004774 175 LELKFTPC 182 (731)
Q Consensus 175 lsl~y~p~ 182 (731)
+++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987763
No 47
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.61 E-value=3.6e-15 Score=138.35 Aligned_cols=103 Identities=33% Similarity=0.540 Sum_probs=90.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~ 92 (731)
..+.|.|+|++|++|+.++..+. +||||+|.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 55899999999999998775554 89999999853 34
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++..+...+.|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 67999999999999999999998763 457999999999887 89999999999999888889999998
No 48
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.61 E-value=2.3e-15 Score=136.81 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=87.1
Q ss_pred EEEEEEEeeCCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
|.|+|++|++|+.++. .+. +||||++.+++ .+.||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999998763 332 89999999988 557999
Q ss_pred cccCCCCCeE-eeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccC---CceeEEEEEccC
Q 004774 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (731)
Q Consensus 98 v~~~~~~P~w-ne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l~~ 161 (731)
+++++.||.| ||+|.|.+... ...|.|+|||++.++ +++||++.+++.++.. +...+.||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999998874 367999999999987 8999999999999986 446889999975
No 49
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=142.82 Aligned_cols=95 Identities=29% Similarity=0.570 Sum_probs=87.9
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
..|.|+|+|.+|.+|...|+.+. +||||.+.+++++ .
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~-l 40 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK-L 40 (168)
T ss_pred cceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee-e
Confidence 57899999999999999887654 9999999999988 5
Q ss_pred eeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCce
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (731)
||++++++.||+|||+|+|.+..+...|+++|||+|.++ +++||.++|++..+.....
T Consensus 41 kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 41 KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhh
Confidence 999999999999999999999999999999999999998 9999999999998875543
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.61 E-value=3.7e-15 Score=138.36 Aligned_cols=103 Identities=26% Similarity=0.476 Sum_probs=90.9
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~~ 92 (731)
..|.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSN 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCC
Confidence 45789999999999998776554 9999999993 345
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
+.+|++++++.+|+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..++....||+|
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 68999999999999999999998764 457999999999887 89999999999999877788999998
No 51
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.60 E-value=2.8e-15 Score=139.50 Aligned_cols=102 Identities=23% Similarity=0.401 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
.+.|.|+|++|+||++++.. +. +||||+|.+.+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~ 51 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSN 51 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999987753 33 99999999942
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
..+.||++++++.||+|||+|.|++... ...|.|+|||.+.++ +++||++.++|.++..+.....||+|
T Consensus 52 ~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 52 RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 2346999999999999999999998753 467999999999887 89999999999999877778899998
No 52
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.60 E-value=3.3e-15 Score=139.37 Aligned_cols=103 Identities=22% Similarity=0.336 Sum_probs=87.6
Q ss_pred eccEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
..+.|.|+|++|+||++++.. +. +||||++.+..
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~ 50 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKS 50 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCc
Confidence 358899999999999987753 43 89999999953
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccC---CceeEEEEEc
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l 159 (731)
..+.||++++++.||+|||+|.|++... ...|.++||+.+.++ +++||++.|+|.++.. ++....||+|
T Consensus 51 ~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 51 HNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred ccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998764 467999999999887 8999999999999964 3467789998
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.60 E-value=6.7e-15 Score=132.57 Aligned_cols=97 Identities=26% Similarity=0.493 Sum_probs=85.1
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~v 98 (731)
|.|+|++|++|+..+..+. +||||++.+++. ..+|++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence 7899999999998765444 999999999984 479999
Q ss_pred ccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCCCceeEEEecccccccCC--ceeEEEEEcc
Q 004774 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDII 160 (731)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~--~~~~~w~~l~ 160 (731)
++++.||+|||.|.|.+..+ ...|.|+|+|.+. +++||++.++|.++... ...+.||+|.
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999999999999999885 5679999999887 89999999999998754 3678999994
No 54
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.60 E-value=1.1e-14 Score=143.39 Aligned_cols=145 Identities=23% Similarity=0.272 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~ 320 (731)
.++++.++++|.+|+++|+|+.|.|.++. .+ . ...|.++|.+|++|||+||||+ |.......
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-----~--~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-----Y--GPVILDALLAAARRGVKVRILV-DEWSNTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----cc-----c--chHHHHHHHHHHHCCCEEEEEE-cccccCCc------
Confidence 57899999999999999999999987532 01 1 2789999999999999999997 55433210
Q ss_pred CcccCChHHHHhhhcC---CCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCC
Q 004774 321 GVMATHDEETKKFFKH---SSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (731)
Q Consensus 321 ~~~~~~~~~~~~~l~~---~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r 397 (731)
.........|.. .||+++..+... ....++|+|++|||++ ++++||.|+.+.+
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~------------~~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDK------------TYGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCc------------ccccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 001234444554 378877432110 0236889999999998 9999999999965
Q ss_pred CCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh--HHHHHHHHHHHHHHhh
Q 004774 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (731)
Q Consensus 398 ~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp--av~dl~~~F~~~Wn~~ 459 (731)
+. .++|..+.+.+| +|.++.+.|.+.|+..
T Consensus 138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 42 357999999999 7999999999999874
No 55
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.60 E-value=4.6e-15 Score=137.99 Aligned_cols=103 Identities=22% Similarity=0.396 Sum_probs=89.1
Q ss_pred eccEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
..|.|.|+|++|+||++.+.. + .+||||+|.+..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~------------------------------------------~~DpyVkv~l~p~~~ 50 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKK------------------------------------------RSNPYVKTYLLPDKS 50 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCC------------------------------------------CCCcEEEEEEEcCCc
Confidence 568899999999999976542 2 289999999943
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
....||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++......+.|++|
T Consensus 51 ~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 51 RQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3356999999999999999999998763 457999999999887 89999999999999988889999998
No 56
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=7.5e-15 Score=134.78 Aligned_cols=97 Identities=22% Similarity=0.336 Sum_probs=85.1
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
+.|.|+|++||+|+.++ +.||||+|.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence 57999999999997533 17899999998865 699
Q ss_pred ccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCcee--EEEEEcc
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~--~~w~~l~ 160 (731)
++.+++ ||.|||.|.|.+......|.|+|||++.++|++||++.|+|+++..++.. ..||+|.
T Consensus 36 ~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999884 99999999999988888899999999988899999999999999866554 7899994
No 57
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=9.4e-15 Score=135.52 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=94.7
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|+|+|++|++|+.++..+. +||||++.+++...++|+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~ 38 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTD 38 (123)
T ss_pred CeEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEcc
Confidence 38999999999998776554 999999999765668999
Q ss_pred cccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC---CceeEEEecccccccCCc-eeEEEEEccCCCCC-CCCCCce
Q 004774 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGAS 172 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~---~~~iG~~~i~l~~~~~~~-~~~~w~~l~~~~~~-~~~~~g~ 172 (731)
+++++.||.|||+|.|.+.. ...|.|+|||++.++ +++||++.+++.++.... ....|++|...... .....|+
T Consensus 39 v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~ 117 (123)
T cd08382 39 VAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGK 117 (123)
T ss_pred EEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeE
Confidence 99999999999999999976 678999999998875 479999999999986433 34679999543321 2234688
Q ss_pred EEEEE
Q 004774 173 IQLEL 177 (731)
Q Consensus 173 L~lsl 177 (731)
|.+++
T Consensus 118 v~~~~ 122 (123)
T cd08382 118 IVVSL 122 (123)
T ss_pred EEEEe
Confidence 87765
No 58
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.59 E-value=4.8e-15 Score=137.32 Aligned_cols=103 Identities=23% Similarity=0.465 Sum_probs=87.6
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|+||++++..+. +||||++.+-.
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~ 49 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSS 49 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCC
Confidence 45789999999999998765443 89999999843
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCC-ceeEEEEEc
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI 159 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~-~~~~~w~~l 159 (731)
....||++++++.||+|||+|.|+++.. ...|.|+||+.+.++ +++||.+.|+|.++... +....||+|
T Consensus 50 ~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 50 TSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2367999999999999999999998774 567999999999887 89999999999999644 457789876
No 59
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1e-14 Score=134.57 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=93.2
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|.|+|++|++|+..+..+. +||||+|.+++....+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 689999999999998775554 99999999988777899
Q ss_pred ccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCC
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
++++++.+|+|||.|.|.+......|.|+|||++.++ +++||++.+++.++..+ ..+.||.|++..
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999888889999999999987 88999999999999865 668899998764
No 60
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.58 E-value=7.5e-15 Score=136.44 Aligned_cols=113 Identities=26% Similarity=0.437 Sum_probs=94.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
+|+|+|++|++|+..+..+. +||||+|.+.+....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 48999999999998765443 999999999884557999
Q ss_pred ccc-CCCCCeEeeEEEEeecCC-----CCeEEEEEEEcCCCC-CceeEEEecccccccCCce-----eEEEEEccCCCCC
Q 004774 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (731)
Q Consensus 98 v~~-~~~~P~wne~f~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~-----~~~w~~l~~~~~~ 165 (731)
+.. ++.+|.|||.|.|.+..+ ...|.|+|||++.++ +++||++.+++.++..+.. ...||+|..++|
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g- 117 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG- 117 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-
Confidence 976 589999999999999887 578999999999866 8999999999999985544 368999987766
Q ss_pred CCCCCceEEE
Q 004774 166 PPKPGASIQL 175 (731)
Q Consensus 166 ~~~~~g~L~l 175 (731)
+..|+|++
T Consensus 118 --~~~G~~~~ 125 (125)
T cd04051 118 --KPQGVLNF 125 (125)
T ss_pred --CcCeEEeC
Confidence 45788864
No 61
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.58 E-value=1.8e-14 Score=134.39 Aligned_cols=114 Identities=25% Similarity=0.499 Sum_probs=95.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|+|+|++|++|+..+..+. +||||+|.+++.. .+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~~-~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKTK-KRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCEe-eecc
Confidence 58999999999998776554 8999999997654 7999
Q ss_pred cccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCC------------CCceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~------------~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
+++++.+|.|||+|.|.+..+...|.|+|||++.. .+++||.+.+++.++. .....||.|. +.+.
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~-~~~~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLE-KRTD 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECc-cCCC
Confidence 99999999999999999877777899999999852 3899999999999875 3356899995 4344
Q ss_pred CCCCCceEEEEE
Q 004774 166 PPKPGASIQLEL 177 (731)
Q Consensus 166 ~~~~~g~L~lsl 177 (731)
.....|+|.+++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 445789998874
No 62
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=1.1e-14 Score=139.00 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCcEEEEEECCe----eeeeeccccCCCCCeEeeEEEEeecC----------------CCCeEEEEEEEcCCCC-CceeE
Q 004774 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (731)
Q Consensus 80 ~d~yv~v~l~~~----~~~~T~v~~~~~~P~wne~f~~~~~~----------------~~~~l~~~v~d~~~~~-~~~iG 138 (731)
+||||+|.+.+. ...+|++++++.||+|||+|.|.+.. ....|.|+||+++.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999652 34699999999999999999999851 1245899999999886 89999
Q ss_pred EEecccccccCC-ceeEEEEEccCC
Q 004774 139 TAAIPAHTIATG-ELISRWYDIIAP 162 (731)
Q Consensus 139 ~~~i~l~~~~~~-~~~~~w~~l~~~ 162 (731)
++.|++..+..+ .....||+|...
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEecccccccCCcCcceeecCCc
Confidence 999999999876 567899999533
No 63
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=2.4e-14 Score=134.98 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=96.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|+|+|++|++|+.++..+. +||||+|.+.+.. .+|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998886665 9999999998755 6999
Q ss_pred cccCCCCCeEeeEEEEeecCC----------CCeEEEEEEEcCCCC-CceeEEEec-ccccccC---CceeEEEEEccCC
Q 004774 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP 162 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~----------~~~l~~~v~d~~~~~-~~~iG~~~i-~l~~~~~---~~~~~~w~~l~~~ 162 (731)
+++++.||.|||.|.|.+... ...|.|+|||.+..+ +++||++.+ |+..+.. +.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985321 246899999999987 899999986 5554442 45677999994 3
Q ss_pred CCCCCCCCceEEEEEEEeec
Q 004774 163 SGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 163 ~~~~~~~~g~L~lsl~y~p~ 182 (731)
.+ ...|+|.+++.+.+.
T Consensus 118 ~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 118 GG---QSAGELLAAFELIEV 134 (135)
T ss_pred CC---CchhheeEEeEEEEe
Confidence 33 368999999999875
No 64
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.57 E-value=3.1e-14 Score=136.19 Aligned_cols=99 Identities=19% Similarity=0.385 Sum_probs=83.4
Q ss_pred CCcEEEEEE----CCeeeeeeccccCCCCCeEeeEEEEeecCC---------CCeEEEEEEEcCCC-C-CceeEEEeccc
Q 004774 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF-G-AQIIGTAAIPA 144 (731)
Q Consensus 80 ~d~yv~v~l----~~~~~~~T~v~~~~~~P~wne~f~~~~~~~---------~~~l~~~v~d~~~~-~-~~~iG~~~i~l 144 (731)
+||||++++ ......||+++++|.||+|||+|.|.+... ...|.|+|||++.+ + |++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 234467999999999999999999998665 34699999999876 4 99999999999
Q ss_pred ccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 004774 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (731)
Q Consensus 145 ~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p 181 (731)
..+........|++|++.+. ..+|.|+++++.-.
T Consensus 105 ~~l~~~~~~~~~~~L~~~~k---~~Gg~l~v~ir~r~ 138 (155)
T cd08690 105 EPLETKCEIHESVDLMDGRK---ATGGKLEVKVRLRE 138 (155)
T ss_pred ccccccCcceEEEEhhhCCC---CcCCEEEEEEEecC
Confidence 99987777888999975433 36899999998654
No 65
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.57 E-value=4.5e-14 Score=131.35 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=95.8
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eeeee
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~~~~ 95 (731)
.|.|+|++|++|+..+..+. +||||++.+.+ ....+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 48899999999998776554 89999999864 34579
Q ss_pred eccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccC---CceeEEEEEccCCCCCCCCCC
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~---~~~~~~w~~l~~~~~~~~~~~ 170 (731)
|++++++.+|.|||+|.|.+... ...|.|+|||++..+ +++||++.++|.++.. +...+.|++| . ..
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-~-------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-D-------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-C-------CC
Confidence 99999999999999999999885 567899999999886 8999999999987643 3356789999 2 25
Q ss_pred ceEEEEEEEeec
Q 004774 171 ASIQLELKFTPC 182 (731)
Q Consensus 171 g~L~lsl~y~p~ 182 (731)
|+|++.+.+.-.
T Consensus 112 g~i~l~~~~~~~ 123 (126)
T cd04043 112 GRLLLRVSMEGE 123 (126)
T ss_pred CeEEEEEEEeee
Confidence 899888887653
No 66
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.57 E-value=1.6e-14 Score=134.44 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=88.3
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----ee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----~~ 92 (731)
+.|.|+|++|++|+.++..+. +||||+|.+.+ ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 789999999999998776554 99999999853 34
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCC---CCceeEEEecccccccCCceeEEEEEc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF---GAQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~---~~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
..+|++++++.||+|||+|.|.+... ...|.|+||+.+.+ .+++||.+.+++.++..++....||+|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 57999999999999999999998654 36789999999875 389999999999999888888999998
No 67
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.56 E-value=2e-14 Score=133.40 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=85.1
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----~ 91 (731)
.+.|.|+|++|++|+.++..+. +||||+|.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 4789999999999998776554 99999999964 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecC----CCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~----~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
.+.+|++++++.+|+|||+|.|.+.. ....|.|+|||.+.++ +++||++.++|.+.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45799999999999999999999654 2467999999999887 899999999999843 3345689998
No 68
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=5e-14 Score=129.13 Aligned_cols=96 Identities=25% Similarity=0.483 Sum_probs=75.7
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~ 155 (731)
+||||.+.+++...++|+++++ .+|.|||+|.|.+... ...|.|.+|+.+... +..+|. +++..+..++..+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEE--EEecCcCCCCccee
Confidence 8999999999877789999999 9999999999999874 355788888887664 556665 55555666777899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 004774 156 WYDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 156 w~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
||+|....+ .....|+|++.++|
T Consensus 95 w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCC-CCCcCceEEEEEEC
Confidence 999953332 23568999999986
No 69
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.55 E-value=1.9e-14 Score=133.14 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=88.3
Q ss_pred eccEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
..+.|.|+|++|++|+.++ ..+. +||||+|.+.+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 4588999999999999876 3333 89999999842
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
....+|++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||++.++|.++..+...+.||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 2457999999999999999999998764 457999999999887 89999999999999878788999986
No 70
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.55 E-value=1.6e-14 Score=131.38 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=84.3
Q ss_pred cEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eee
Q 004774 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~~ 93 (731)
|.|+|+|++|++|+..+.. +. +||||+|.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999987765 43 89999999853 345
Q ss_pred eeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 94 ~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++. ....|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence 7999999999999999999987764 467999999999987 899999999999997 23478887
No 71
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.54 E-value=6.2e-15 Score=138.93 Aligned_cols=111 Identities=23% Similarity=0.351 Sum_probs=91.5
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
...+.|.|+|++|+||+.++.... +++||||+|.+..
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~ 51 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNA 51 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCc
Confidence 357889999999999998874211 1289999999854
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
..+.||++++++.||+|||.|.|.++.. ...|.|+|||.|.++ +++||++.+++.. .|++.++|..+++..++
T Consensus 52 k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~ 129 (138)
T cd08407 52 KLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRR 129 (138)
T ss_pred ccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCC
Confidence 2356999999999999999999998874 466999999999988 8999999999974 67778899999876554
Q ss_pred C
Q 004774 166 P 166 (731)
Q Consensus 166 ~ 166 (731)
+
T Consensus 130 ~ 130 (138)
T cd08407 130 Q 130 (138)
T ss_pred c
Confidence 4
No 72
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=6.2e-14 Score=128.19 Aligned_cols=111 Identities=27% Similarity=0.449 Sum_probs=93.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeecc
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~v 98 (731)
|+|+|++|++|+..+..+. +||||+|.+.+...++|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999998765444 8999999998766789999
Q ss_pred ccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 004774 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (731)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~ 174 (731)
+.++.+|.|||+|.|.+... ...+.|+|||++..+ +++||++.+++.++..+.....|++|... ++ ...|.|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~-g~--~~~~~~~ 113 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQ-GG--GKLGAVF 113 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCC-CC--ccCceEE
Confidence 99999999999999998774 567899999999886 89999999999999888888999999533 32 2356554
No 73
>PRK13912 nuclease NucT; Provisional
Probab=99.53 E-value=7.6e-15 Score=144.80 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
..+...++.+|++|+++|+|+ .|++++. .+..+|.+| ++|||+|+||++...+... ...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~-~Y~~~~~-----------------~i~~aL~~A--a~RGV~VrIlld~~~~~~~-~~~ 90 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIA-IYSFTHK-----------------DIAKALKSA--AKRGVKISIIYDYESNHNN-DQS 90 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEE-EEEEchH-----------------HHHHHHHHH--HHCCCEEEEEEeCccccCc-chh
Confidence 457789999999999999998 4887763 789999999 6799999999998654211 110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeE
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHI 719 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~ 719 (731)
. + .+.+.+ .+++.....-+... ......++|+|++|||++++++||+|++.+|+..|.|+++
T Consensus 91 ~----------~-----~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~H~K~~viD~~~~~iGS~N~t~~s~~~N~E~~l 152 (177)
T PRK13912 91 T----------I-----GYLDKY--PNIKVCLLKGLKAK-NGKYYGIMHQKVAIIDDKIVVLGSANWSKNAFENNYEVLL 152 (177)
T ss_pred H----------H-----HHHHhC--CCceEEEecCcccc-CcccccccceeEEEEcCCEEEEeCCCCChhHhccCCceEE
Confidence 0 0 011111 12210000000000 0011246999999999999999999999999999999999
Q ss_pred EEecccccC
Q 004774 720 HIFANSFLG 728 (731)
Q Consensus 720 ~i~~~~~~~ 728 (731)
++.++++++
T Consensus 153 ii~d~~~~~ 161 (177)
T PRK13912 153 ITDDTETIL 161 (177)
T ss_pred EECCHHHHH
Confidence 999998764
No 74
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.53 E-value=5.9e-14 Score=131.09 Aligned_cols=102 Identities=27% Similarity=0.394 Sum_probs=85.2
Q ss_pred ccEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004774 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~ 92 (731)
.+.|.|+|++|++|+.++.. +. +||||+|.+.. ..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------------------~DpyV~v~l~~~~~~ 52 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------------------SDPYVKLQLLPEKEH 52 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------------------cCCEEEEEEeCCcCc
Confidence 46899999999999987654 33 89999999853 34
Q ss_pred eeeeccccCCCCCeEeeEEEEe-ecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCC--ceeEEEEEc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~--~~~~~w~~l 159 (731)
..||++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||++.++|.++..+ ++...|.+|
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 5699999999999999999994 4432 346899999999887 89999999999999755 678889988
No 75
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=5.9e-14 Score=127.74 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=86.9
Q ss_pred CCcCCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCCCceeEEEecccccccC-Ccee
Q 004774 76 KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELI 153 (731)
Q Consensus 76 ~~~~~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~-~~~~ 153 (731)
..|.+||||+|.+++....+|++++++.||+|||.|.|.+.+. ...|.|+|+|.+.+++++||++.++|.++.. +...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 4566899999999887778999999999999999999999875 4669999999998889999999999999853 4456
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEeec
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl~y~p~ 182 (731)
+.||+|.+ ...|+|++++.|.|+
T Consensus 89 ~~w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 89 QQWFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred ceeEECCC------CCCCEEEEEEEEecC
Confidence 79999942 246999999999984
No 76
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=5.4e-14 Score=130.63 Aligned_cols=101 Identities=22% Similarity=0.378 Sum_probs=87.2
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--eee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~~ 93 (731)
.+.|.|+|++|+||++++..+. +||||++.+.. ...
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~ 52 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQR 52 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCcce
Confidence 3789999999999998775543 89999988743 445
Q ss_pred eeeccccCCCCCeEeeEEEEe-ecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 94 ARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 94 ~~T~v~~~~~~P~wne~f~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
.||+++++ .||+|||+|.|+ +... ...|.|+||+++.++ +++||++.|+|.++..++....|++|
T Consensus 53 ~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 53 AKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred eecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 79999988 999999999999 5542 467999999999887 89999999999999988889999998
No 77
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.53 E-value=4.8e-14 Score=127.62 Aligned_cols=96 Identities=20% Similarity=0.356 Sum_probs=79.8
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|.|+|++|++|+..+..+. ...++||||+|.++... .||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~~-~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRRV-FRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCEe-Eee
Confidence 789999999999998664221 00128999999997654 699
Q ss_pred ccccCCCCCeEeeEEEEeecCCC--CeEEEEEEEcCCCC-CceeEEEecccccccCCc
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~ 151 (731)
++++++.||+|||.|.|++.+.. ..|.|+|||++.++ +++||++.++|.++..+.
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999999999999986643 46899999999987 899999999999988553
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=6.1e-14 Score=130.29 Aligned_cols=102 Identities=30% Similarity=0.473 Sum_probs=87.8
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Ceee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~~~ 93 (731)
.+.|.|+|++|++|+.++..+. +||||++.+. ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 5689999999999998775554 8999999993 3445
Q ss_pred eeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 94 ~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
.+|++++++.+|+|||+|.|...+. ...|.|+|||.+.++ +++||++.+++.++..+.....|++|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999984332 356899999999887 89999999999999988888999998
No 79
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.53 E-value=1.1e-14 Score=137.15 Aligned_cols=108 Identities=23% Similarity=0.378 Sum_probs=89.1
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|+||+.++..+. +||||+|.+..
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~ 50 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRK 50 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 45789999999999998776554 99999999943
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (731)
....||+|++++.||+|||+|.|.++.. ...|.|+|||.+.++ +++||++.|+.. ..++..++|..++...+++
T Consensus 51 ~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 51 ISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred ccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 2246999999999999999999998763 467999999999877 899999999776 4567778898887665543
No 80
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.53 E-value=2.9e-14 Score=140.25 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCh
Q 004774 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (731)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~ 638 (731)
...+.+.++.+|.+|+++|+|+++||.+.. ......|..+|.+| +++||+|+||+...+.... .
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a--~~rGv~V~il~~~~~~~~~--~ 82 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAA--ARRGVKVRILVDEWSNTDL--K 82 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHH--HHCCCEEEEEEcccccCCc--h
Confidence 467899999999999999999999999741 00013788999999 5579999999998764321 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCcCCeEEEEeccCC---CCCCCCccccCCCceeeeccccccccccc
Q 004774 639 TVQEILFWQSQTMQMMYSVVAQELREM---QVDAHPQDYLSFYCLGKR---EEAPKDVLANNGDKMLGISFSNFFMRIEG 712 (731)
Q Consensus 639 ~v~~~~~~~~~ti~~~~~~~~~~Ll~~---Gv~~~~~~yi~~y~~~~~---~~~lHaK~~ivDd~~~~vGS~Nld~RS~~ 712 (731)
. ...++..|.++ |++ +..+ ... ...+|+|++|||++.++|||+|++.+|+.
T Consensus 83 ~---------------~~~~~~~l~~~~~~~i~------~~~~--~~~~~~~~~~H~K~~iiD~~~~~vGS~N~~~~~~~ 139 (176)
T cd00138 83 I---------------SSAYLDSLRALLDIGVR------VFLI--RTDKTYGGVLHTKLVIVDDETAYIGSANLDGRSLT 139 (176)
T ss_pred H---------------HHHHHHHHHHhhcCceE------EEEE--cCCcccccceeeeEEEEcCCEEEEECCcCChhhhh
Confidence 0 12334455554 553 2222 212 25699999999999999999999999999
Q ss_pred cccceeEEEeccc-cc
Q 004774 713 SQKCCHIHIFANS-FL 727 (731)
Q Consensus 713 ~n~E~~~~i~~~~-~~ 727 (731)
.|.|+++.+.++. ++
T Consensus 140 ~~~e~~~~~~~~~~~~ 155 (176)
T cd00138 140 LNSEVGVVIYDPASLA 155 (176)
T ss_pred hhcceEEEEeChHHHH
Confidence 9999999999987 44
No 81
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=6.9e-14 Score=133.78 Aligned_cols=116 Identities=29% Similarity=0.377 Sum_probs=87.0
Q ss_pred EEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeeec
Q 004774 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~ 97 (731)
.|.|+|++|++|+.+|..+. ...+. +. .+...+.+||||+|.+++.+ .||+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~-------------------~~-------~~~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK-------------------AF-------LGEKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee-------------------cc-------ccCCCCCcCcEEEEEECCEe-eecc
Confidence 37899999999999885431 00000 00 01122348999999999876 5999
Q ss_pred cccCCCCCeEeeEEEEeecC--CCCeEEEEEEEcCCCC-CceeEEEecccccccCCce-------eEEEEEccCC
Q 004774 98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAP 162 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~--~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~-------~~~w~~l~~~ 162 (731)
+++++.||+|||+|.|++.. ....|.|+|||++..+ +++||++.+++.++...+. ...|+.|+++
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 99999999999999999643 3567999999999985 9999999999999875432 2467777644
No 82
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.52 E-value=7.6e-14 Score=129.52 Aligned_cols=100 Identities=26% Similarity=0.515 Sum_probs=88.5
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|.|+|++|++|+..+..+. +||||+|.+.+.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 689999999999998776554 8999999998755 588
Q ss_pred ccccC-CCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 97 ~v~~~-~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
++.++ +.+|.|||+|.|.+..+ ...|.|+|||.+.+. +++||++.+++.++..+...+.|+.|
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 88875 89999999999999887 467999999999886 89999999999999877788899999
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.51 E-value=9.7e-14 Score=126.26 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=70.6
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC-----CCeEEEEEEEcCCCC-CceeEEEecccccccCC---
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~--- 150 (731)
+||||++.+++++ .+|++++++.+|.|||+|.|.+..+ ...|.|+|||.+.++ +++||++.++|.++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999865 6999999999999999999997554 357899999999887 89999999999999654
Q ss_pred ceeEEEEEccC
Q 004774 151 ELISRWYDIIA 161 (731)
Q Consensus 151 ~~~~~w~~l~~ 161 (731)
.....|++|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45788999964
No 84
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.51 E-value=2.1e-14 Score=135.01 Aligned_cols=108 Identities=29% Similarity=0.434 Sum_probs=90.8
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..|.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999998776554 89999999853
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (731)
....+|++++++.+|+|||+|.|.+... ...|.|+|||.+..+ +++||.+.+++.. .++..++|+.++...+++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 3357999999999999999999998764 357999999999887 8999999999985 466678899997665543
No 85
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.51 E-value=1.1e-13 Score=128.16 Aligned_cols=103 Identities=25% Similarity=0.434 Sum_probs=88.7
Q ss_pred eccEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Ce
Q 004774 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~ 91 (731)
..+.|.|+|++|++|+.++ ..+. +||||++.+. ..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~ 49 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDER 49 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCC
Confidence 3578999999999999876 3333 8999999984 33
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
...+|++++++.+|+|||+|.|.+... ...|.|+|||.+..+ +++||++.++|.++........|++|
T Consensus 50 ~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 50 RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 457999999999999999999998764 357999999999887 89999999999999988888899998
No 86
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=3e-14 Score=132.66 Aligned_cols=114 Identities=19% Similarity=0.322 Sum_probs=89.8
Q ss_pred ceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC
Q 004774 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (731)
Q Consensus 10 ~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~ 89 (731)
+......|.|.|+|++|+||++++.... .||||+|.+-
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~------------------------------------------~dpYVKV~L~ 44 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLT------------------------------------------LSFFVKVGMF 44 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCC------------------------------------------CCcEEEEEEE
Confidence 3345677899999999999997643222 7999999983
Q ss_pred C----eeeeeeccccCCC-CCeEeeEEEEeecCCCC--eEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccC
Q 004774 90 Q----ATVARTRVLKNSQ-EPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (731)
Q Consensus 90 ~----~~~~~T~v~~~~~-~P~wne~f~~~~~~~~~--~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (731)
. ..+.||++++++. +|+|||+|.|+++.+.. .+.++|||.+..+ +++||++.++.+.. .+++.++|..++.
T Consensus 45 ~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~ 123 (135)
T cd08692 45 STGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA 123 (135)
T ss_pred ECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence 2 4567999999985 69999999999988643 4678899998876 89999999999864 3556789999977
Q ss_pred CCCCC
Q 004774 162 PSGSP 166 (731)
Q Consensus 162 ~~~~~ 166 (731)
...++
T Consensus 124 ~pr~~ 128 (135)
T cd08692 124 NPEKV 128 (135)
T ss_pred CCCCe
Confidence 65543
No 87
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.50 E-value=1.1e-13 Score=152.03 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=101.9
Q ss_pred hHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEEeCCCCccCccCccCCC
Q 004774 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (731)
Q Consensus 243 ~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA-~rGVkVriLv~D~~gs~~~~~~~~~~ 321 (731)
..++++++|.+||++|+|++|.|-|.. +++. . ...+..|.++|.+|| +|||+||||+ |..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~-~--~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------ 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDD-K--TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------ 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCC-C--CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch------
Confidence 468999999999999999999886642 2222 0 001258999999985 9999999997 876542210
Q ss_pred cccCChHHHHhhhcCCCce----EEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCC
Q 004774 322 VMATHDEETKKFFKHSSVN----CVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (731)
Q Consensus 322 ~~~~~~~~~~~~l~~~gV~----v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r 397 (731)
.....+.|..+|++ ++++ .+++|+|++|||++ +||+||+|+...+
T Consensus 284 -----~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s 332 (369)
T PHA03003 284 -----SMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTH 332 (369)
T ss_pred -----hhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchh
Confidence 13455667777754 3211 11279999999999 9999999998855
Q ss_pred CCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhh
Q 004774 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459 (731)
Q Consensus 398 ~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~ 459 (731)
|.. ..+.++. ...|++|.+++..|.++|+..
T Consensus 333 ~~~------------------------------~~e~~~~-~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 333 YLH------------------------------HAFVSFN-TIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred hcc------------------------------CCCeEEe-cCChhHHHHHHHHHHHHhCCc
Confidence 532 1233332 567999999999999999764
No 88
>PRK13912 nuclease NucT; Provisional
Probab=99.50 E-value=3.7e-13 Score=132.80 Aligned_cols=140 Identities=17% Similarity=0.267 Sum_probs=101.1
Q ss_pred chHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCC
Q 004774 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~ 321 (731)
++++.++++|++|+++|+|+.|.|.. ..+.++|.+|++|||+||||+ |..++...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc-------
Confidence 67899999999999999999998731 479999999999999999996 98754321
Q ss_pred cccCChHHHHhhh-cCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 004774 322 VMATHDEETKKFF-KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (731)
Q Consensus 322 ~~~~~~~~~~~~l-~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~ 400 (731)
+......+ +.+++++......... .......+|+|++|||++ ++++|+.|++...+..
T Consensus 88 -----~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~ 146 (177)
T PRK13912 88 -----DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN 146 (177)
T ss_pred -----chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC--------EEEEeCCCCChhHhcc
Confidence 01111122 3457776642111100 011234689999999998 9999999999855532
Q ss_pred CCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhh
Q 004774 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (731)
Q Consensus 401 ~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~~Wn~~ 459 (731)
. +++.+.+..| ++.++.+.|.+.|..+
T Consensus 147 N--------------------------------~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 N--------------------------------YEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred C--------------------------------CceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1 3567788887 5799999999999764
No 89
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.50 E-value=3.9e-14 Score=133.77 Aligned_cols=108 Identities=27% Similarity=0.452 Sum_probs=90.1
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e-
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A- 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~- 91 (731)
..+.|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~ 50 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence 46789999999999998776554 99999999843 2
Q ss_pred -eeeeeccccCCCCCeEeeEEEEeecC---CCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCC
Q 004774 92 -TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (731)
Q Consensus 92 -~~~~T~v~~~~~~P~wne~f~~~~~~---~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (731)
...+|+|++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.+++.. .++....|++|.+..+++
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 34689999999999999999999875 3456899999999987 8999999999988 466678899997665543
No 90
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.49 E-value=9.8e-14 Score=134.84 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=86.9
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----C
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~----~ 90 (731)
..|.|.|+|++|++|+..+..+. +||||+|.+. .
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45889999999999998776554 9999999883 2
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
..++||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.+++.++........|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3467999999999999999999985432 356899999999988 89999999999998766566778777
No 91
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.48 E-value=1.4e-13 Score=131.82 Aligned_cols=100 Identities=25% Similarity=0.445 Sum_probs=86.1
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe--
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA-- 91 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~-- 91 (731)
...+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~ 62 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASR 62 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccc
Confidence 346789999999999999887665 999999998531
Q ss_pred --------------------------eeeeeccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCCCceeEEEeccc
Q 004774 92 --------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPA 144 (731)
Q Consensus 92 --------------------------~~~~T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l 144 (731)
.+++|++++++.+|.|||+|.|.+... ...|.|+|||.+ +++||++.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l 139 (153)
T cd08676 63 ERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPL 139 (153)
T ss_pred ccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEH
Confidence 247899999999999999999998764 567999999998 89999999999
Q ss_pred ccccCCceeEEEEEc
Q 004774 145 HTIATGELISRWYDI 159 (731)
Q Consensus 145 ~~~~~~~~~~~w~~l 159 (731)
.++. +...+.||+|
T Consensus 140 ~~l~-~~~~d~W~~L 153 (153)
T cd08676 140 KDLP-SCGLDSWFKL 153 (153)
T ss_pred HHhC-CCCCCCeEeC
Confidence 9998 4457899986
No 92
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.48 E-value=2.3e-13 Score=127.52 Aligned_cols=108 Identities=26% Similarity=0.439 Sum_probs=92.0
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
+.|..+.|.|+|++|++|+..+..+. +||||+|.+.+
T Consensus 8 ~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~~ 45 (131)
T cd04026 8 ISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 45 (131)
T ss_pred EEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEcC
Confidence 45778999999999999997664443 89999999953
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEeecCC--CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
...++|++++++.+|.|||+|.|.+... ...|.|+|||++... +++||++.+++.++... ..+.||+|.++
T Consensus 46 ~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 46 PKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3568999999999999999999998764 457999999999876 89999999999999855 67889999755
No 93
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.4e-13 Score=150.93 Aligned_cols=128 Identities=27% Similarity=0.398 Sum_probs=107.7
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~ 91 (731)
+-...|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~------------------------------------------sdpyVK~~llPdk~ 201 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGT------------------------------------------SDPYVKVYLLPDKK 201 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCC------------------------------------------CCCeeEEEEcCCCC
Confidence 556779999999999999883332 99999999965 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~ 167 (731)
...+|+|.+++.||+|||+|.|.++.. ...|.++|||.|+|+ +++||++.++|..+........|.++........
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~ 281 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSE 281 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcc
Confidence 467999999999999999999997765 467999999999998 9999999999999987766788999965433333
Q ss_pred CCCceEEEEEEEeecC
Q 004774 168 KPGASIQLELKFTPCD 183 (731)
Q Consensus 168 ~~~g~L~lsl~y~p~~ 183 (731)
...|+|.++++|.|.+
T Consensus 282 ~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 282 ELAGELLLSLCYLPTA 297 (421)
T ss_pred cccceEEEEEEeecCC
Confidence 4448999999999974
No 94
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.47 E-value=2.1e-13 Score=128.88 Aligned_cols=102 Identities=22% Similarity=0.435 Sum_probs=86.9
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---eeeee
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR 95 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---~~~~~ 95 (731)
|.|+|++|++|+.+ ..+. +||||+|.+.. ...++
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r 37 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR 37 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence 67999999999876 4343 89999999973 45689
Q ss_pred eccccCCCCCeEeeEEEEeecCC----------------CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEE
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~----------------~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (731)
|++++++.+|.|||+|.|.+... ...|.|+|||.+..+ +++||++.+++.++........||+
T Consensus 38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~ 117 (137)
T cd08675 38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF 117 (137)
T ss_pred cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence 99999999999999999998764 356899999999985 8999999999999987777889999
Q ss_pred ccCCCC
Q 004774 159 IIAPSG 164 (731)
Q Consensus 159 l~~~~~ 164 (731)
| .+.+
T Consensus 118 L-~~~~ 122 (137)
T cd08675 118 L-QPRE 122 (137)
T ss_pred c-CCcC
Confidence 9 4444
No 95
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.47 E-value=6.3e-14 Score=132.28 Aligned_cols=108 Identities=29% Similarity=0.469 Sum_probs=89.6
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~-- 90 (731)
..++|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45899999999999998765554 8999999983 2
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (731)
....+|++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.+. +...++|++|+...+++
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 2346899999999999999999997642 457899999999887 89999999999875 55677899888776554
No 96
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.47 E-value=3.3e-14 Score=134.19 Aligned_cols=113 Identities=28% Similarity=0.483 Sum_probs=92.0
Q ss_pred ceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC
Q 004774 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (731)
Q Consensus 10 ~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~ 89 (731)
+......|.|.|+|++|++|+.++..+. +||||+|.+.
T Consensus 8 l~y~~~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~ 45 (136)
T cd08402 8 LRYVPTAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLM 45 (136)
T ss_pred eEEcCCCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEE
Confidence 3344467899999999999998776554 9999999984
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccC
Q 004774 90 Q----ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (731)
Q Consensus 90 ~----~~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (731)
. ....+|++++++.+|.|||+|.|.+.... ..|.|+|||.+.++ +++||++.+++.. .+++.++|++++.
T Consensus 46 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~ 123 (136)
T cd08402 46 QNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLA 123 (136)
T ss_pred ECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence 2 23568999999999999999999987542 46899999999987 8999999999975 3666788999976
Q ss_pred CCCCC
Q 004774 162 PSGSP 166 (731)
Q Consensus 162 ~~~~~ 166 (731)
...++
T Consensus 124 ~~~~~ 128 (136)
T cd08402 124 SPRRP 128 (136)
T ss_pred CCCCe
Confidence 65443
No 97
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.47 E-value=1.4e-13 Score=156.89 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=107.8
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~ 320 (731)
+..+.+++++|.+||++|+|++..|-| + ..+.++|+.||+|||+||||+ +..+.....
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~p-------d---------~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~----- 400 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIP-------D---------QETLTLLRLSAISGIDVRILY-PGKSDSIIS----- 400 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCC-------C---------HHHHHHHHHHHHcCCEEEEEc-CCCCChHHH-----
Confidence 578999999999999999999855533 2 579999999999999999997 764322110
Q ss_pred CcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 004774 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (731)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~ 400 (731)
........+.|.++||++..+. + ...|+|++|||++ +|++|+.|+....+.
T Consensus 401 ---~~a~~~~~~~L~~aGv~I~~y~--~---------------~~lHaK~~ivD~~--------~a~vGS~Nld~RS~~- 451 (509)
T PRK12452 401 ---DQASQSYFTPLLKAGASIYSYK--D---------------GFMHAKIVLVDDK--------IATIGTANMDVRSFE- 451 (509)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEec--C---------------CCeeeeEEEECCC--------EEEEeCcccCHhHhh-
Confidence 0001344566778999997421 1 1359999999999 999999999874331
Q ss_pred CCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcc
Q 004774 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (731)
Q Consensus 401 ~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~ 461 (731)
..|.+..+...|+.|.+++..|.++|..+..
T Consensus 452 ------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~ 482 (509)
T PRK12452 452 ------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHSTE 482 (509)
T ss_pred ------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 3567889999999999999999999987543
No 98
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.46 E-value=6.1e-14 Score=132.07 Aligned_cols=109 Identities=33% Similarity=0.489 Sum_probs=90.2
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
...|.|+|+|++|++|++++..+. +||||+|.+..
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~ 48 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGR 48 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCc
Confidence 456889999999999998876664 89999999842
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
....+|++++++.+|.|||+|.|.+.... ..|.|+|||.+.++ +++||++.+++. ..+...++|++++...++
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRK 126 (134)
T ss_pred ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCC
Confidence 23579999999999999999999986542 45899999999988 899999999987 335566789999877665
Q ss_pred C
Q 004774 166 P 166 (731)
Q Consensus 166 ~ 166 (731)
+
T Consensus 127 ~ 127 (134)
T cd08403 127 P 127 (134)
T ss_pred e
Confidence 4
No 99
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.45 E-value=7.2e-14 Score=132.08 Aligned_cols=108 Identities=20% Similarity=0.421 Sum_probs=89.9
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|+||+..+ .+. +||||+|.+..
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~ 49 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKV 49 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEE
Confidence 3578999999999999877 443 89999999853
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
....||++++++.||+|||+|.|.++.. ...|.|+||+.+..+ +++||++.|+......+++.++|..++...++
T Consensus 50 ~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 50 VKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred eeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 1346999999999999999999998753 356999999999776 89999999998777778888899998765443
No 100
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.45 E-value=4.2e-13 Score=127.73 Aligned_cols=91 Identities=31% Similarity=0.645 Sum_probs=81.9
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T 96 (731)
|.|.|+|++|++|+..+. +. +||||++.++++. .+|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 789999999999987664 32 8999999998765 799
Q ss_pred ccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCc
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~ 151 (731)
++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||.+.+++.++....
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 9999999999999999999998888999999999887 899999999999987543
No 101
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.45 E-value=1.2e-13 Score=129.80 Aligned_cols=106 Identities=31% Similarity=0.520 Sum_probs=90.4
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----~ 91 (731)
.+.|.|+|++|++|+..+..+. +||||++.+.+ .
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 4789999999999998764443 89999999854 2
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
...+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.+ .+...+.|++|++..++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK 126 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence 356999999999999999999998775 467999999999876 8999999999998 57778899999876554
No 102
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.45 E-value=1e-13 Score=131.04 Aligned_cols=108 Identities=19% Similarity=0.375 Sum_probs=87.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---e
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---~ 91 (731)
..+.|.|+|++|+||+.++..+. +||||++.+.. .
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~ 50 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQ 50 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCc
Confidence 45899999999999998776554 89999999842 1
Q ss_pred --eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 92 --~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
...||++++++.||+|||+|.|+++.. ...|.|+||+.+.++ +++||++.+++.... .++.++|+.++...++
T Consensus 51 ~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~ 129 (138)
T cd08408 51 EISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQ 129 (138)
T ss_pred ceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCC
Confidence 246999999999999999999998763 457999999999877 899999999987443 2345678888766554
No 103
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.45 E-value=1e-13 Score=130.67 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=87.2
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC-C---
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-Q--- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~-~--- 90 (731)
..|.|.|+|++|++|+.++..+. +||||+|.+. +
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 55899999999999998876664 9999999983 2
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~ 166 (731)
....+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||++.|...... +...++|+.|+...+++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 2346999999999999999999998653 346899999999877 899999987654332 22457899998776654
No 104
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.44 E-value=1.3e-12 Score=121.57 Aligned_cols=116 Identities=29% Similarity=0.522 Sum_probs=94.1
Q ss_pred EEEEEEEEeeCCCCCC--CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-----
Q 004774 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (731)
Q Consensus 18 ~L~v~i~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----- 90 (731)
.|+|+|++|++|+.++ ..+. .||||++++.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------------------VDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------------------cCCEEEEEEEeCCCCC
Confidence 5899999999998765 2232 89999999942
Q ss_pred eeeeeeccccCCC-CCeEeeEEEEeecCCC-CeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 004774 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (731)
Q Consensus 91 ~~~~~T~v~~~~~-~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (731)
....+|+++.++. +|+|||+|.|.+..+. ..|.|+|||.+..++++||.+.+++.++..+ ..|++|.+..+.+ .
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-L 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-C
Confidence 3447999988765 9999999999987654 5689999999888889999999999999654 4789998776653 4
Q ss_pred CCceEEEEEEE
Q 004774 169 PGASIQLELKF 179 (731)
Q Consensus 169 ~~g~L~lsl~y 179 (731)
..|.|.+.+.+
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 56899888875
No 105
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.44 E-value=1.8e-13 Score=126.89 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHH
Q 004774 566 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILF 645 (731)
Q Consensus 566 yl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~ 645 (731)
++.+|.+|+++|+|.+|||... .+..+|..+ +++|++|+|++....+.......
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~~~~~~~------ 54 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDDSEAINL------ 54 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGHHCCCSH------
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccccchhhh------
Confidence 3679999999999999999433 567888776 66999999999974321000011
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeEEEeccc
Q 004774 646 WQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANS 725 (731)
Q Consensus 646 ~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~ 725 (731)
.....+.+.+.+.|++ ++ ..+|+|++++|++.++|||+||+.+|+..|.|+++.+.+++
T Consensus 55 -------~~~~~~~~~~~~~~i~--------v~------~~~H~K~~i~d~~~~iiGS~N~t~~~~~~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 55 -------ASLKELRELLKNAGIE--------VR------NRLHAKFYIIDDKVAIIGSANLTSSSFRRNYELGVIIDDPE 113 (126)
T ss_dssp -------HHHHHHHHHHHHTTHC--------EE------S-B--EEEEETTTEEEEES--CSCCCSCTSEEEEEEEECHH
T ss_pred -------HHHHHHHhhhccceEE--------Ee------cCCCcceEEecCccEEEcCCCCCcchhcCCcceEEEEECHH
Confidence 1123444445788886 22 36899999999999999999999999999999999999986
Q ss_pred cc
Q 004774 726 FL 727 (731)
Q Consensus 726 ~~ 727 (731)
..
T Consensus 114 ~~ 115 (126)
T PF13091_consen 114 LV 115 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 106
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.44 E-value=4.9e-13 Score=124.24 Aligned_cols=91 Identities=26% Similarity=0.378 Sum_probs=77.7
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeee
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~ 93 (731)
..-|.|+|+|++|++|+. +..+. +||||+|.+++. +
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~ 60 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-E 60 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-c
Confidence 456899999999999973 43333 899999999876 5
Q ss_pred eeeccccCCCCCeEeeEEEEeecC--CCCeEEEEEEEcCCCC-CceeEEEeccccccc
Q 004774 94 ARTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (731)
Q Consensus 94 ~~T~v~~~~~~P~wne~f~~~~~~--~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~ 148 (731)
.||++++++.||+|||+|.|.... ....|.|+|||++.++ +++||++.++|....
T Consensus 61 ~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 61 KRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred ccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 899999999999999999997433 3678999999999986 999999999998665
No 107
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.44 E-value=1.4e-12 Score=121.41 Aligned_cols=97 Identities=25% Similarity=0.420 Sum_probs=78.2
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCc---e--e
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE---L--I 153 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~---~--~ 153 (731)
+||||+|.+++....+|++++++.+|+|||.|.|.+.. ...|.|+|||++..+ +++||++.++|.++.... . .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 89999999987656899999999999999999999864 568999999999986 899999999999987422 1 3
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl 177 (731)
..|+++..+........|+|.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 458999544311234578888765
No 108
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.42 E-value=2.4e-12 Score=121.24 Aligned_cols=114 Identities=24% Similarity=0.395 Sum_probs=90.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e-----
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A----- 91 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~----- 91 (731)
..|++++|++|+ ++..+. +||||++++.. .
T Consensus 3 ~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~~ 39 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFPA 39 (137)
T ss_pred EEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCcccccc
Confidence 578999999998 565554 99999999953 1
Q ss_pred -----eeeeeccccCCCCCeE-eeEEEEeecCCCCeEEEEEEEcCCCC----CceeEEEecccccccCC---ceeEEEEE
Q 004774 92 -----TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATG---ELISRWYD 158 (731)
Q Consensus 92 -----~~~~T~v~~~~~~P~w-ne~f~~~~~~~~~~l~~~v~d~~~~~----~~~iG~~~i~l~~~~~~---~~~~~w~~ 158 (731)
...+|++++++.||+| ||+|.|.+.. ...|.|+|||++..+ +++||++.+++.++..+ .....|++
T Consensus 40 ~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~ 118 (137)
T cd08691 40 LPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYT 118 (137)
T ss_pred cccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEE
Confidence 2579999999999999 9999999864 457999999976532 69999999999999744 34667999
Q ss_pred ccCCCCCCCCCCceEEEEE
Q 004774 159 IIAPSGSPPKPGASIQLEL 177 (731)
Q Consensus 159 l~~~~~~~~~~~g~L~lsl 177 (731)
| ..++......|+|.+.+
T Consensus 119 l-~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 119 L-GRRTPTDHVSGQLTFRF 136 (137)
T ss_pred C-CcCCCCCcEEEEEEEEe
Confidence 9 45445556678888765
No 109
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.42 E-value=8.8e-14 Score=146.45 Aligned_cols=107 Identities=26% Similarity=0.440 Sum_probs=95.4
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
+-...|+|+|.+|+||-+||.+|. +||||++.+-.
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPK 214 (683)
T ss_pred ecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCc
Confidence 445679999999999999999997 99999999943
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCCC--CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCC
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
..++||++++.++||+|||+|+|.+.+.. ..|.|+|||+|+.+ ++|+|...+.+++|. .+..++||.|+...
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE 290 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence 56689999999999999999999998874 66899999999988 999999999999998 55788999998663
No 110
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.42 E-value=8.6e-13 Score=124.12 Aligned_cols=90 Identities=30% Similarity=0.465 Sum_probs=79.2
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC------
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------ 90 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~------ 90 (731)
+.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~ 53 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD 53 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence 689999999999998776554 99999999853
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC-----CCeEEEEEEEcCCCC-CceeEEEeccccccc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~-----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~ 148 (731)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++.
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 3468999999999999999999998763 457899999999988 899999999999987
No 111
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.39 E-value=3.9e-12 Score=115.45 Aligned_cols=90 Identities=30% Similarity=0.498 Sum_probs=67.5
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEc-------CCCC-CceeEEEecccccc
Q 004774 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHTI 147 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~-------~~~~-~~~iG~~~i~l~~~ 147 (731)
+||||++.++. ...+||+++++|.||+|||+|.|.+.. ...|.+.|||. |..+ ++++|++.+.|+.-
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECHH
Confidence 89999999864 346899999999999999999999974 67899999997 3445 89999988887533
Q ss_pred c--CCceeEEEEEccCCCCCCCCCCceEEEEEEE
Q 004774 148 A--TGELISRWYDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 148 ~--~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
. .......-+.| ..-+|.++|+|
T Consensus 94 ~~~~~~~~~~~~~~---------~~~~~~~s~~~ 118 (118)
T cd08686 94 SLQTKKWQEKVISM---------NGITVNLSIKF 118 (118)
T ss_pred HhccCCeeEEEEEe---------cCEEEEEEEeC
Confidence 2 22333344444 12367777765
No 112
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.37 E-value=3.5e-12 Score=117.74 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=70.1
Q ss_pred CCcEEEEEECCee------eeeeccccCCCCCeEeeEEEEeecC-CCCeEEEEEEEcCC----CC-CceeEEEecccccc
Q 004774 80 SDPYVTVVVPQAT------VARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (731)
Q Consensus 80 ~d~yv~v~l~~~~------~~~T~v~~~~~~P~wne~f~~~~~~-~~~~l~~~v~d~~~----~~-~~~iG~~~i~l~~~ 147 (731)
+||||+|.+.+.. +++|++++++.||+|||+|.|.+.. ....|.|+|||++. ++ +++||++.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 8999999996643 5899999999999999999998653 45678999999996 55 89999999999999
Q ss_pred cCCceeEEEEEc
Q 004774 148 ATGELISRWYDI 159 (731)
Q Consensus 148 ~~~~~~~~w~~l 159 (731)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 988778889999
No 113
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.36 E-value=5.1e-12 Score=117.05 Aligned_cols=102 Identities=28% Similarity=0.428 Sum_probs=83.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|++|++.+..+. +||||++.+.+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~ 50 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASK 50 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCC
Confidence 34689999999999998765443 89999999842
Q ss_pred eeeeeeccccCCCCCeEeeEEEEe-ecCC---CCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEE
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~-~~~~---~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (731)
....+|++++++.+|+|||.|.|. +... ...+.|+|||.+.+++++||.+.+++.++..++..+.|+.
T Consensus 51 ~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 51 ATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 346799999999999999999996 3322 4578999999988788999999999999987766665554
No 114
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=3.1e-12 Score=118.79 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=88.5
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee-eeeec
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR 97 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~-~~~T~ 97 (731)
|+|+|++|++|+.++..+. +||||++.+++.. ..+|+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT~ 39 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRDN 39 (124)
T ss_pred EEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeeccceee
Confidence 7899999999998876554 9999999998754 35888
Q ss_pred cccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004774 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~l 175 (731)
+++++.||+|||+|.|.+..+ ...|.|+|||.+.++ +++||++.+++.+... ..+|.....+...+ ..|.++.
T Consensus 40 ~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~~ 114 (124)
T cd04037 40 YIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQW 114 (124)
T ss_pred EEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCceec
Confidence 899999999999999997654 567999999999986 8999999999986652 23444442232222 3566665
Q ss_pred EEEEee
Q 004774 176 ELKFTP 181 (731)
Q Consensus 176 sl~y~p 181 (731)
.-.+.|
T Consensus 115 ~~~~~~ 120 (124)
T cd04037 115 RDSLKP 120 (124)
T ss_pred CcccCc
Confidence 555444
No 115
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=2.5e-12 Score=161.12 Aligned_cols=122 Identities=22% Similarity=0.459 Sum_probs=103.2
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
+.-+.|.|.|+|++|+||. +.++ ++||||++.++++
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~------------------------------------------~sdPyv~l~~g~~ 2010 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMG------------------------------------------NTNAFCKLTLGNG 2010 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccC------------------------------------------CCCCeEEEEECCC
Confidence 4457899999999999997 2233 3999999999976
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCC--CeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~--~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~ 169 (731)
...||+|++++.||+|||+|+|.+..+. ..|.|+|||+|.++++.+|.+.|++.++..+.....||+|. ++++ .
T Consensus 2011 ~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~---k 2086 (2102)
T PLN03200 2011 PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PESN---K 2086 (2102)
T ss_pred CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-cccc---c
Confidence 5569999999999999999998877764 67999999999999889999999999999888999999995 3332 2
Q ss_pred Cce---EEEEEEEee
Q 004774 170 GAS---IQLELKFTP 181 (731)
Q Consensus 170 ~g~---L~lsl~y~p 181 (731)
.|+ |.+.+.|.+
T Consensus 2087 ~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2087 DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCcceEEEEEEecC
Confidence 455 999998865
No 116
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-11 Score=137.63 Aligned_cols=129 Identities=26% Similarity=0.365 Sum_probs=114.1
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
...|.|+|.+|+||++.+..|. .||||+|.++++.+.+
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~R 41 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVCR 41 (800)
T ss_pred ccceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhhh
Confidence 4579999999999998876654 9999999999999999
Q ss_pred eccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~l 175 (731)
|.++.++.-|.|.|+|.|.++.....|.|-|||.|.-.|+.||++.|.-.+|......+.||.| .+-....+..|+|++
T Consensus 42 T~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v~l 120 (800)
T KOG2059|consen 42 TATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKVHL 120 (800)
T ss_pred hhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeEEE
Confidence 9999999999999999999999999999999999944499999999999999877788999999 555555577899999
Q ss_pred EEEEeecCCCCc
Q 004774 176 ELKFTPCDKNPL 187 (731)
Q Consensus 176 sl~y~p~~~~p~ 187 (731)
++.+.+...+..
T Consensus 121 ~l~~~e~~~~~~ 132 (800)
T KOG2059|consen 121 ELALTEAIQSSG 132 (800)
T ss_pred EEEeccccCCCc
Confidence 999999766543
No 117
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.24 E-value=3.3e-09 Score=113.35 Aligned_cols=332 Identities=16% Similarity=0.138 Sum_probs=183.0
Q ss_pred hHHHHHHHHHhcccEEEEEEEEeeccce-eeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCC
Q 004774 243 CWEDICHAISEAHHLIYIVGWSVFHKIK-LIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (731)
Q Consensus 243 ~f~~l~~aI~~Ak~sI~i~~wi~~~~~~-l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~ 321 (731)
.+++.++.|+.|+++++|..|-++=... +.-+|. ....| +.+...|..++.+||.||+.. +...... +
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds-St~~G--~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~------ 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS-STQYG--EQVYNTLLALAKSGVKIRIAQ-SYPSGGP-P------ 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCC-cchHH--HHHHHHHHHhccCCeEEEEEe-ecCCCCC-C------
Confidence 5788999999999999997765532110 000111 11123 789999999999999999996 4442111 1
Q ss_pred cccCChHHHHhhhcCCC-ceEEe--cccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCC
Q 004774 322 VMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY 398 (731)
Q Consensus 322 ~~~~~~~~~~~~l~~~g-V~v~~--~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~ 398 (731)
..-...|+..| ++++- .+.++. -.-.|-|..|||++ -=|+||.|+...-
T Consensus 142 ------~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDWrS- 193 (456)
T KOG3603|consen 142 ------NADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDWRS- 193 (456)
T ss_pred ------cccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccchhh-
Confidence 12234466666 77762 112221 12459999999998 8899999998722
Q ss_pred CCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC--hHHHHHHHHHHHHHHhhcccchhhhhhccccccc
Q 004774 399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 476 (731)
Q Consensus 399 d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~G--pav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~ 476 (731)
.+. -..+++.+.- -++.||...|.++|.......- .-++|.
T Consensus 194 lTq-------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~------~p~~wp 236 (456)
T KOG3603|consen 194 LTQ-------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSL------IPKKWP 236 (456)
T ss_pred ccc-------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCcc------CCCCCc
Confidence 110 1133343332 3699999999999986543310 001111
Q ss_pred ccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccc
Q 004774 477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 556 (731)
Q Consensus 477 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~ 556 (731)
... ..+... + .|- . . ..+......++..|.+ |-.|
T Consensus 237 ~~~-----st~~N~-~-----------~p~----~--~-~~dg~~~~~y~saSP~-------~~~~-------------- 271 (456)
T KOG3603|consen 237 NCY-----STHYNK-P-----------LPM----K--I-AVDGTPATPYISASPP-------PLNP-------------- 271 (456)
T ss_pred ccc-----cccccc-c-----------Ccc----e--e-ecCCCCcceEEccCCC-------CCCC--------------
Confidence 000 000000 0 000 0 0 0011223444444421 1111
Q ss_pred cchhHHHHHHHHHHHhccceEEEec-ccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC
Q 004774 557 VIDKSIQTAYIQAIRSAQHFIYIEN-QYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (731)
Q Consensus 557 ~~e~sI~~ayl~~I~~Ak~~IyIen-qYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~ 635 (731)
.+...=.+|+++.|..|++||||.- .||-+.... +|.--.+|=.+|.+| +-|||+|++++.-+...++
T Consensus 272 ~grt~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~---------k~~~fw~iDdaiR~a--a~RgV~vR~lvs~~~~~~~ 340 (456)
T KOG3603|consen 272 SGRTWDLEAILNTIDEAQKFVYISVMDYFPSTIYS---------KNHRFWEIDDAIRRA--AVRGVKVRLLVSCWKHSEP 340 (456)
T ss_pred CCCchhHHHHHHHHHHHhhheeeeehhccchheee---------cCcchhhhhHHHHHH--hhcceEEEEEEeccCCCCc
Confidence 0112235799999999999999964 555443321 222122778888888 5599999999997754332
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEec-c------CCCCCCCCccccCCCceeeeccccccc
Q 004774 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCL-G------KREEAPKDVLANNGDKMLGISFSNFFM 708 (731)
Q Consensus 636 ~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~-~------~~~~~lHaK~~ivDd~~~~vGS~Nld~ 708 (731)
.+.. ..+++ +.+...+...-|+ +.|+-. . ..+.-.|+|.||-+. .+.|||+|...
T Consensus 341 ---~m~~----~L~SL----q~l~~~~~~~~iq------vk~f~VP~~~~~~ip~~Rv~HnKymVTe~-aayIGTSNws~ 402 (456)
T KOG3603|consen 341 ---SMFR----FLRSL----QDLSDPLENGSIQ------VKFFIVPQTNIEKIPFARVNHNKYMVTES-AAYIGTSNWSG 402 (456)
T ss_pred ---hHHH----HHHHH----HHhcCccccCceE------EEEEEeCCCccccCchhhhccceeEEeec-ceeeeccCCCc
Confidence 1110 01111 1111122111122 122211 1 012348999999887 69999999987
Q ss_pred cccccccceeEEEecc
Q 004774 709 RIEGSQKCCHIHIFAN 724 (731)
Q Consensus 709 RS~~~n~E~~~~i~~~ 724 (731)
==|.--.=+.++|..+
T Consensus 403 dYf~~TaG~~ivv~q~ 418 (456)
T KOG3603|consen 403 DYFTSTAGTAIVVRQT 418 (456)
T ss_pred cceeccCceEEEEecC
Confidence 6666656666666554
No 118
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.20 E-value=1.2e-10 Score=107.80 Aligned_cols=124 Identities=20% Similarity=0.380 Sum_probs=86.7
Q ss_pred HHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCc-cCccCccCCCcccC
Q 004774 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS-HDKLGVKTPGVMAT 325 (731)
Q Consensus 247 l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs-~~~~~~~~~~~~~~ 325 (731)
|.++|++|+++|+|+.+.|. + ..|.++|..++++||+|+|++ |.... .... . ..
T Consensus 1 l~~~i~~A~~~i~i~~~~~~--------~---------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~--~-----~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT--------D---------PDIIKALLDAAKRGVKVRIIV-DSNQDDSEAI--N-----LA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS---------S---------CHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCC--S-----HH
T ss_pred CHHHHhccCCEEEEEEEecC--------c---------HHHHHHHHHHHHCCCeEEEEE-CCCccccchh--h-----hH
Confidence 57899999999999988662 1 578999999999999999997 65321 0100 0 00
Q ss_pred ChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCC
Q 004774 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405 (731)
Q Consensus 326 ~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~ 405 (731)
....+.+.+...|++++ .+.|.|++|||++ ++++|+.|++...|.
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------ 100 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------ 100 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------
Confidence 01334455577888876 1449999999998 999999999996552
Q ss_pred cCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChH-HHHHHHHHHHHH
Q 004774 406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (731)
Q Consensus 406 ~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpa-v~dl~~~F~~~W 456 (731)
..++..+.+.+|. +.++.+.|.+.|
T Consensus 101 --------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 --------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp --------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred --------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2368999999996 999999999989
No 119
>PRK05443 polyphosphate kinase; Provisional
Probab=99.20 E-value=2.9e-11 Score=140.89 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=96.3
Q ss_pred HHHHHHHHhccc-----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCh
Q 004774 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (731)
Q Consensus 564 ~ayl~~I~~Ak~-----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~ 638 (731)
...+..|++|.+ .|.|+- |-+... ..++.+|..| +++|++|+|++|..+--+ .
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~----------------s~iv~aL~~A--a~~Gk~V~vlve~karfd--e- 408 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTL-YRTSKD----------------SPIVDALIEA--AENGKQVTVLVELKARFD--E- 408 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEE-EEecCC----------------HHHHHHHHHH--HHcCCEEEEEEccCcccc--H-
Confidence 567789999999 799885 555432 2789999999 779999999999875211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCc-------eeeecccccccccc
Q 004774 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDK-------MLGISFSNFFMRIE 711 (731)
Q Consensus 639 ~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~-------~~~vGS~Nld~RS~ 711 (731)
| ....+++.|.++||+ .+|++ ...++|||+++||++ |+.|||+|+|.||+
T Consensus 409 -------~-------~n~~~~~~L~~aGv~-------V~y~~--~~~k~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~ 465 (691)
T PRK05443 409 -------E-------ANIRWARRLEEAGVH-------VVYGV--VGLKTHAKLALVVRREGGGLRRYVHLGTGNYNPKTA 465 (691)
T ss_pred -------H-------HHHHHHHHHHHcCCE-------EEEcc--CCccceeEEEEEEeecCCceeEEEEEcCCCCCcchh
Confidence 1 124667889999996 23555 346899999999999 99999999999999
Q ss_pred ccccceeEEEecccccC
Q 004774 712 GSQKCCHIHIFANSFLG 728 (731)
Q Consensus 712 ~~n~E~~~~i~~~~~~~ 728 (731)
.+|+|+++++.+++++.
T Consensus 466 ~~y~D~~l~t~d~~i~~ 482 (691)
T PRK05443 466 RLYTDLSLLTADPEIGE 482 (691)
T ss_pred hhccceeEEEeChHHHH
Confidence 99999999999998764
No 120
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.17 E-value=1.1e-10 Score=132.79 Aligned_cols=146 Identities=18% Similarity=0.114 Sum_probs=104.7
Q ss_pred CCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccC
Q 004774 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHD 313 (731)
Q Consensus 234 ~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~ 313 (731)
+|+.+..+.....+.++|.+||++|+|++-.|-| + ..+.++|..||+|||+||||+ +......
T Consensus 310 sgP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip-------~---------~~i~~aL~~Aa~rGV~Vril~-p~~~d~~ 372 (483)
T PRK01642 310 SGPGDPEETIHQFLLTAIYSARERLWITTPYFVP-------D---------EDLLAALKTAALRGVDVRIII-PSKNDSL 372 (483)
T ss_pred CCCCChhhHHHHHHHHHHHHhccEEEEEcCCcCC-------C---------HHHHHHHHHHHHcCCEEEEEe-CCCCCcH
Confidence 3444433567888999999999999998632322 1 579999999999999999997 6643221
Q ss_pred ccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccC
Q 004774 314 KLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (731)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI 393 (731)
... .......+.|.++||++..+ .. ...|.|++|||++ ++++|+.|+
T Consensus 373 ~~~--------~~~~~~~~~L~~~Gv~I~~y---~~--------------~~~HaK~~ivD~~--------~~~vGS~N~ 419 (483)
T PRK01642 373 LVF--------WASRAFFTELLEAGVKIYRY---EG--------------GLLHTKSVLVDDE--------LALVGTVNL 419 (483)
T ss_pred HHH--------HHHHHHHHHHHHcCCEEEEe---CC--------------CceEeEEEEECCC--------EEEeeCCcC
Confidence 110 00133455677889998742 11 1249999999999 999999999
Q ss_pred CCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhcc
Q 004774 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (731)
Q Consensus 394 ~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~~Wn~~~~ 461 (731)
...-|.. =+++.+.+.+| .++++.+.|.++|..+..
T Consensus 420 d~rS~~~--------------------------------N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~ 456 (483)
T PRK01642 420 DMRSFWL--------------------------------NFEITLVIDDTGFAADLAAMQEDYFARSRE 456 (483)
T ss_pred CHhHHhh--------------------------------hhcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 7633311 03678889997 589999999999977543
No 121
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.17 E-value=8.9e-11 Score=130.30 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
+....+++.+|.+||++|+|++.||.++.. +..+.++|.+| +++||+|+|+++.....+.
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~~--------------g~~l~~aL~~a--a~rGV~Vril~D~~gs~~~---- 76 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFEDKV--------------GKQLHAALLAA--AQRGVKVEVLVDGYGSPDL---- 76 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecCch--------------HHHHHHHHHHH--HHCCCEEEEEEECCCCCCC----
Confidence 568899999999999999999999988753 35888999988 7799999999997632111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccC-----C---CCCCCCccccCCCceeeecccccccccc
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGK-----R---EEAPKDVLANNGDKMLGISFSNFFMRIE 711 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~-----~---~~~lHaK~~ivDd~~~~vGS~Nld~RS~ 711 (731)
...+++.|.++||+ +.+|.+.. + -..+|.|++|||+++++|||.|+..--+
T Consensus 77 ---------------~~~~~~~L~~aGv~------v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~~a~vGg~N~~~~~~ 135 (411)
T PRK11263 77 ---------------SDEFVNELTAAGVR------FRYFDPRPRLLGMRTNLFRRMHRKIVVIDGRIAFVGGINYSADHL 135 (411)
T ss_pred ---------------CHHHHHHHHHCCeE------EEEeCCcccccccccccccCCcceEEEEcCCEEEEcCeEchHhhc
Confidence 13566789999997 22332210 0 1248999999999999999999965322
Q ss_pred c-----cccceeEEEeccc
Q 004774 712 G-----SQKCCHIHIFANS 725 (731)
Q Consensus 712 ~-----~n~E~~~~i~~~~ 725 (731)
. ...++++.|.+|.
T Consensus 136 ~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 136 SDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred cccCCCCceEEEEEEECHH
Confidence 1 2467778887764
No 122
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.17 E-value=1.3e-10 Score=105.39 Aligned_cols=69 Identities=33% Similarity=0.556 Sum_probs=59.2
Q ss_pred CCcEEEEEECCe-----eeeeeccccCCCCCeEeeEEEEeecC-----CCCeEEEEEEEcCCCC-CceeEEEeccccccc
Q 004774 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (731)
Q Consensus 80 ~d~yv~v~l~~~-----~~~~T~v~~~~~~P~wne~f~~~~~~-----~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~ 148 (731)
+||||+|.+.+. ..++|++++++.+|+|| +|.|++.. ....|.|+|||++.++ +++||++.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 999999998542 35899999999999999 78888542 2567999999999987 899999999999998
Q ss_pred C
Q 004774 149 T 149 (731)
Q Consensus 149 ~ 149 (731)
.
T Consensus 100 ~ 100 (110)
T cd04047 100 K 100 (110)
T ss_pred c
Confidence 3
No 123
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.16 E-value=1e-10 Score=99.80 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.7
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe--eeeee
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~--~~~~T 96 (731)
|+|+|++|++|+..+..+. .||||++.+.+. ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999998665443 899999999773 33899
Q ss_pred ccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEe
Q 004774 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (731)
Q Consensus 97 ~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~ 141 (731)
+++.++.+|.|||+|.|.+..+ ...|.|+||+.+..+ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999996554 466999999999998 99999874
No 124
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.08 E-value=7.1e-10 Score=96.54 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=70.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecC-CCCeEEEEEEEcCCCC-CceeEEEeccccccc-CCceeEEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~-~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~-~~~~~~~w 156 (731)
++|||++.+.....++|++..++.+|.|||.|.|++.. ....+.|+|++.+... +.++|.+.+++.++. .......|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999988555799999999999999999999988 6678999999998887 899999999999998 66667778
Q ss_pred EEc
Q 004774 157 YDI 159 (731)
Q Consensus 157 ~~l 159 (731)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 765
No 125
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.2e-09 Score=95.71 Aligned_cols=73 Identities=42% Similarity=0.754 Sum_probs=65.2
Q ss_pred CCcEEEEEECCe--eeeeeccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCCce
Q 004774 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (731)
Q Consensus 80 ~d~yv~v~l~~~--~~~~T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (731)
.+|||++.+... ...+|+++.++.+|.|||+|.|.+... ...|.|+||+.+... +.++|.+.+++.++..+..
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 899999999875 568999999999999999999999888 788999999998876 8999999999998875543
No 126
>PLN02223 phosphoinositide phospholipase C
Probab=99.03 E-value=2.3e-09 Score=119.68 Aligned_cols=96 Identities=23% Similarity=0.421 Sum_probs=79.4
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEeecCCCC-eEEEEEEEcCCCC-CceeEEEecccccccCCcee
Q 004774 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~v~~~~~~P~wne~f~~~~~~~~~-~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (731)
.||||+|.+.+ ....+|+|..++.||+|||+|.|++..++. -|+|+|+|+|... ++++|++.+|+..+..|-
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 89999999955 344688888889999999999999887764 5799999999876 899999999999999774
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
++++|++..|.+.. ...|.+.+.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 78899888887644 3566666554
No 127
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.1e-10 Score=123.39 Aligned_cols=122 Identities=25% Similarity=0.480 Sum_probs=101.5
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
+...+.++|++|++|..+|..|. +||||++.++..+ .
T Consensus 293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r 329 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R 329 (1283)
T ss_pred cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence 55678999999999998887775 9999999998866 5
Q ss_pred eeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCC------------CCceeEEEecccccccCCceeEEEEEccCC
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~------------~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
+|+++-...||+|||.|.|.+.+....|++.|||.|.. +|+|+|+..|-+..+. | +.+-||.|. .
T Consensus 330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynle-k 406 (1283)
T KOG1011|consen 330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLE-K 406 (1283)
T ss_pred hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchh-h
Confidence 99999999999999999999999999999999998754 3799999999888776 3 467899994 4
Q ss_pred CCCCCCCCceEEEEEEEeec
Q 004774 163 SGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 163 ~~~~~~~~g~L~lsl~y~p~ 182 (731)
+..+....|-|++.+...-.
T Consensus 407 rtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 407 RTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred ccchhhccceEEEEEEEEEc
Confidence 43344567888887776543
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=98.97 E-value=5.2e-09 Score=119.34 Aligned_cols=96 Identities=23% Similarity=0.455 Sum_probs=78.4
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCcee
Q 004774 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (731)
.||||+|.+.+ ....+|+++.++.||+|||+|.|++..+. .-|.|+|+|+|..+ ++++|++.+|+..+..|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999954 44569999999999999999999988765 45799999999877 899999999999999775
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
+|++|.+..|.+.. ...|.+.+.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 59999888876533 3345555444
No 129
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6.5e-10 Score=123.71 Aligned_cols=111 Identities=32% Similarity=0.553 Sum_probs=91.0
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
.+..+|.|+|.|++|++|+.++..+. +||||++.+-.
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~ 330 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDG 330 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecC
Confidence 44557999999999999999887775 89999999832
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCC
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
..+.||.+.+++.||+|||+|.|.++.. ...|.|+|||++.++ .++||.+.+.... .+.+..+|..++...
T Consensus 331 ~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p 408 (421)
T KOG1028|consen 331 DKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSP 408 (421)
T ss_pred CceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCc
Confidence 5567999999999999999999988864 346899999999998 7899998887764 455566787776655
Q ss_pred CCC
Q 004774 164 GSP 166 (731)
Q Consensus 164 ~~~ 166 (731)
+++
T Consensus 409 ~~p 411 (421)
T KOG1028|consen 409 RKP 411 (421)
T ss_pred cCc
Confidence 443
No 130
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.93 E-value=4.5e-09 Score=119.48 Aligned_cols=98 Identities=27% Similarity=0.503 Sum_probs=81.7
Q ss_pred CCcEEEEEECC----eeeeeec-cccCCCCCeEeeEEEEeecCCCC-eEEEEEEEcCCCC-CceeEEEecccccccCCce
Q 004774 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~-v~~~~~~P~wne~f~~~~~~~~~-~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (731)
+||||.|++.+ +.+.+|+ |..++.+|.|+|+|.|++.-|+. -|+|.|+|.|..+ ++|+|+.++|+..+..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 89999999855 5668999 56669999999999999988864 4699999999998 999999999999999774
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEee
Q 004774 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (731)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~L~lsl~y~p 181 (731)
+-++|++..|... ...+|.+.+.+.+
T Consensus 720 --RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCccc-cceeEEEEEEEec
Confidence 5678888877653 4578888887764
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.91 E-value=5.6e-09 Score=122.80 Aligned_cols=129 Identities=26% Similarity=0.436 Sum_probs=103.3
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
--|.|.|+|.+|++|...+..-. ++.|||+++.......+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~g 473 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIG 473 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCC
Confidence 35889999999999987662221 23899999999887778
Q ss_pred eeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEE-EEEccCCCCCCCCCCce
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGAS 172 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~-w~~l~~~~~~~~~~~g~ 172 (731)
||++++++.||+|||+|.+.+..-...|.++|||.+.++ +..+|++.++|+.+........ -+.++.. . +..|+
T Consensus 474 kT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~-~---k~vGr 549 (1227)
T COG5038 474 KTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN-T---KNVGR 549 (1227)
T ss_pred ccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc-C---ccceE
Confidence 999999999999999999999988899999999977766 9999999999998874433332 3444322 2 46899
Q ss_pred EEEEEEEeecCCCCc
Q 004774 173 IQLELKFTPCDKNPL 187 (731)
Q Consensus 173 L~lsl~y~p~~~~p~ 187 (731)
|...++|.|...+..
T Consensus 550 L~yDl~ffp~~e~k~ 564 (1227)
T COG5038 550 LTYDLRFFPVIEDKK 564 (1227)
T ss_pred EEEeeeeecccCCcc
Confidence 999999999765544
No 132
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.91 E-value=5.6e-09 Score=97.38 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.6
Q ss_pred CCcEEEEEECC--eeeeeeccccCCCC--CeEeeEEEEeecCC------------------------CCeEEEEEEEcCC
Q 004774 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (731)
Q Consensus 80 ~d~yv~v~l~~--~~~~~T~v~~~~~~--P~wne~f~~~~~~~------------------------~~~l~~~v~d~~~ 131 (731)
+||||++.+.+ ...++|.|..++.+ |.||+.|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999976 56789999999999 99999999997661 2457999999999
Q ss_pred CC-CceeEEEecccccccCCc
Q 004774 132 FG-AQIIGTAAIPAHTIATGE 151 (731)
Q Consensus 132 ~~-~~~iG~~~i~l~~~~~~~ 151 (731)
++ +++||.++++|..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 999999999999887553
No 133
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.91 E-value=9.9e-09 Score=116.84 Aligned_cols=96 Identities=22% Similarity=0.449 Sum_probs=79.7
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCcee
Q 004774 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (731)
.||||+|.+.+ ..+.+|++..++.||+|||+|.|++.-++ .-|+|+|+|+|... ++++|+.+||+..|..|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 79999999944 44569999999999999999999977765 56799999999865 999999999999999774
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
+.++|++..|.+.. ..+|.+.+.|
T Consensus 574 -R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 57899888887644 3577776665
No 134
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.90 E-value=3.8e-09 Score=124.20 Aligned_cols=123 Identities=25% Similarity=0.382 Sum_probs=102.7
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
.|.|+|.+.+|.||+..|..+. +||||++.+.+...++
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence 7899999999999999999887 9999999999988999
Q ss_pred eccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCceE
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L 173 (731)
|++++++.||+|||+|.+++..- ...+++.|+|+|... ++.||.+.++|+.+..+.....-.+| +... .....|.+
T Consensus 1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~ 1154 (1227)
T COG5038 1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTL 1154 (1227)
T ss_pred ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEe
Confidence 99999999999999999999864 566899999999987 89999999999999877665555566 4332 22345666
Q ss_pred EEEEEEeec
Q 004774 174 QLELKFTPC 182 (731)
Q Consensus 174 ~lsl~y~p~ 182 (731)
+....|.+.
T Consensus 1155 ~~~~~~r~~ 1163 (1227)
T COG5038 1155 HPGFNFRSK 1163 (1227)
T ss_pred ecceecchh
Confidence 666665554
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.83 E-value=3.1e-08 Score=112.71 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=79.8
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCcee
Q 004774 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (731)
.||||+|.+.+ ..+.+|+++.++.+|+|||+|.|++..++ .-|+|.|+|+|... ++++|+..+|+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 89999999954 44569999999999999999999987765 55799999998876 899999999999999774
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 004774 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
+.++|.+..|.+.. ..+|.+.+.|
T Consensus 557 -R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 57899888887644 3577776665
No 136
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=110.19 Aligned_cols=131 Identities=27% Similarity=0.483 Sum_probs=107.0
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
|.|.|-|+|..||+||-||..+. ..|.||+|.+++.. .
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 46899999999999999987664 28999999999877 7
Q ss_pred eeccccCCCCCeEe-eEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEeccccccc----------CCceeEEEEEc
Q 004774 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA----------TGELISRWYDI 159 (731)
Q Consensus 95 ~T~v~~~~~~P~wn-e~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~----------~~~~~~~w~~l 159 (731)
||.|..++.||.|| +-|.|.+... ...|.|++.|+|..+ ++.||++.|.++.+. .|....+||++
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 5688888774 467999999999998 899999999998875 24567899999
Q ss_pred cCCCCCCCCCCceEEEEEEEeecCCCCcccc
Q 004774 160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQ 190 (731)
Q Consensus 160 ~~~~~~~~~~~g~L~lsl~y~p~~~~p~~~~ 190 (731)
++.-. ...|+|.+-++.--......|-+
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~q 146 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQ 146 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccc
Confidence 87643 35799998887655444444333
No 137
>PLN02228 Phosphoinositide phospholipase C
Probab=98.77 E-value=6.4e-08 Score=109.86 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=82.6
Q ss_pred CCcEEEEEECC----eeeeeeccccCCCCCeE-eeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCce
Q 004774 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (731)
Q Consensus 80 ~d~yv~v~l~~----~~~~~T~v~~~~~~P~w-ne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~ 152 (731)
.||||+|.+.+ ....+|+++.++.+|+| ||+|.|++..+. .-|+|.|+|.|... ++++|+.+||+..|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999954 34469999999999999 999999987765 55799999998776 899999999999998774
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEeec
Q 004774 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~ 182 (731)
+.++|++..|.+.. .++|.+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 57899888887644 4688888887763
No 138
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.75 E-value=3.9e-08 Score=86.53 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=57.3
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEeccccccc
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~ 148 (731)
+||||.|.+++..++||++ +.||.|||+|.|++. ...++++.|||+.....-.||..-+++.+|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 8999999999987789988 589999999999995 4778999999997766778899999998876
No 139
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.75 E-value=5e-08 Score=104.43 Aligned_cols=172 Identities=17% Similarity=0.236 Sum_probs=112.4
Q ss_pred CCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEe
Q 004774 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (731)
Q Consensus 227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~ 306 (731)
+|.-+...|++ .=.+||+..|+.|+++|+|..--+.|......+ .+ -..|.++|.+||=|||+||+|+-
T Consensus 265 SP~~~~~~grt----~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~------fw~iDdaiR~aa~RgV~vR~lvs 333 (456)
T KOG3603|consen 265 SPPPLNPSGRT----WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HR------FWEIDDAIRRAAVRGVKVRLLVS 333 (456)
T ss_pred CCCCCCCCCCc----hhHHHHHHHHHHHhhheeeeehhccchheeecC-cc------hhhhhHHHHHHhhcceEEEEEEe
Confidence 45555666774 348899999999999999977666676544333 31 25899999999999999999983
Q ss_pred CCCCccCccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEE
Q 004774 307 DDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA 386 (731)
Q Consensus 307 D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~va 386 (731)
+..-+.... .+.+-. -+.+...+++..|+|+++- -|.... ......+.+|+|.+|-+. .|
T Consensus 334 ~~~~~~~~m----~~~L~S-Lq~l~~~~~~~~iqvk~f~-VP~~~~-----~~ip~~Rv~HnKymVTe~---------aa 393 (456)
T KOG3603|consen 334 CWKHSEPSM----FRFLRS-LQDLSDPLENGSIQVKFFI-VPQTNI-----EKIPFARVNHNKYMVTES---------AA 393 (456)
T ss_pred ccCCCCchH----HHHHHH-HHHhcCccccCceEEEEEE-eCCCcc-----ccCchhhhccceeEEeec---------ce
Confidence 222111100 000000 0122233457788888642 121110 022345789999999997 89
Q ss_pred EEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeee-----EeChHHHHHHHHHHHHHHhhcc
Q 004774 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-----LDGPAAYDVLINFEQRWRKATK 461 (731)
Q Consensus 387 fvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~-----i~Gpav~dl~~~F~~~Wn~~~~ 461 (731)
|+|--|.+-+||..... +.+. -.|+++.+|..+|.++|++.-.
T Consensus 394 yIGTSNws~dYf~~TaG--------------------------------~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 394 YIGTSNWSGDYFTSTAG--------------------------------TAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred eeeccCCCccceeccCc--------------------------------eEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 99999999988854210 1111 3578999999999999987543
No 140
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.68 E-value=8.6e-08 Score=107.48 Aligned_cols=135 Identities=15% Similarity=0.058 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCC
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDPKT 637 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~--g~~~~ 637 (731)
...+.+++.+|++|+++|||++-||-.++. +.+++.+|.+|.++++||+|+|++=..-. |-+.+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~--------------g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDEA--------------GREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCch--------------HHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 468899999999999999999999998864 36899999988777899999999975310 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCcCCeEEEEecc--CCCC--CCCCccccCCCceeeecccccccccc
Q 004774 638 NTVQEILFWQSQTMQMMYSVVAQELREMQ--VDAHPQDYLSFYCLG--KREE--APKDVLANNGDKMLGISFSNFFMRIE 711 (731)
Q Consensus 638 ~~v~~~~~~~~~ti~~~~~~~~~~Ll~~G--v~~~~~~yi~~y~~~--~~~~--~lHaK~~ivDd~~~~vGS~Nld~RS~ 711 (731)
... ....+++..|.++| ++ +.+|+.. .++. -+|-|.+||||++++.| +|++.--+
T Consensus 100 ~~~------------~~~~~~~~~l~~~~~gv~------v~~f~~p~~~~e~~gr~HrKi~IiD~~v~ysG-aNi~d~Yl 160 (451)
T PRK09428 100 AAS------------NTNADWYCEMAQEYPGVD------IPVYGVPVNTREALGVLHLKGFIIDDTVLYSG-ASLNNVYL 160 (451)
T ss_pred CCC------------CcCHHHHHHHHHhCCCce------EEEcCCccccchhhhhceeeEEEECCCEEEec-ccccHHHh
Confidence 000 01145677888764 75 4455331 1111 28999999999999999 89987443
Q ss_pred cc----ccceeEEEeccccc
Q 004774 712 GS----QKCCHIHIFANSFL 727 (731)
Q Consensus 712 ~~----n~E~~~~i~~~~~~ 727 (731)
.- .+.-.+.|.++..+
T Consensus 161 ~~~~~~r~Dry~~i~g~~la 180 (451)
T PRK09428 161 HQHDKYRYDRYHLIRNAELA 180 (451)
T ss_pred cCCcccCcceEEEEeCchHH
Confidence 32 34556777776643
No 141
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.67 E-value=5.5e-09 Score=69.67 Aligned_cols=26 Identities=58% Similarity=0.994 Sum_probs=17.9
Q ss_pred cccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 363 ~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
.++||||++|||++ +||+||+|++++
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~ 27 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDG 27 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCC
Confidence 46899999999999 999999999974
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.46 E-value=7e-07 Score=101.04 Aligned_cols=101 Identities=25% Similarity=0.387 Sum_probs=76.5
Q ss_pred CCcEEEEEECC-----eeeeeeccccCCCCCeEe-eEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCc
Q 004774 80 SDPYVTVVVPQ-----ATVARTRVLKNSQEPVWN-EHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (731)
Q Consensus 80 ~d~yv~v~l~~-----~~~~~T~v~~~~~~P~wn-e~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~ 151 (731)
+.|||+|++.+ .+.++|.|..+..||+|| |.|+|.+..|. ..|+|.|++.|+++ ..|||+++.|+..+..|-
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence 67999999954 344456667779999999 99999999986 56799999999999 589999999999998763
Q ss_pred eeEEEEEccCCCCCCCCCCceEEEEEEEeecCC
Q 004774 152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (731)
Q Consensus 152 ~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~~~ 184 (731)
+..+|- ..-+..-....|.+.+...|...
T Consensus 1165 ---RsVpLk-N~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1165 ---RSVPLK-NGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred ---eeeecc-cCchhhhhhhhheeeeEeccccC
Confidence 456773 22222223456777777766543
No 143
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.40 E-value=1.1e-06 Score=99.19 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=96.6
Q ss_pred HHHHHHHHhcccEEEEEE-EEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcc
Q 004774 245 EDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (731)
Q Consensus 245 ~~l~~aI~~Ak~sI~i~~-wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~ 323 (731)
..++.+|.+|+++|+|+. |.+. + ..+.++|..++++||+|+||+ ++.+...... .
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~~---------------~--~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~------~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFVP---------------D--RELLAALKAAARRGVDVRIII-PSLGANDSAI------V 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcCC---------------C--HHHHHHHHHHHhcCCEEEEEe-CCCCCCChHH------H
Confidence 679999999999999997 6541 1 678899999999999999997 7432221100 0
Q ss_pred cCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCC
Q 004774 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (731)
Q Consensus 324 ~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h 403 (731)
........+.+...|+++.. ++.. ...|.|++|||++ ++++|+.|+...-+...
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~---~~~g-------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~lN-- 382 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYE---YPGG-------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRLN-- 382 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEE---ecCC-------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHHh--
Confidence 00013345567788998863 2210 2459999999999 99999999998433210
Q ss_pred CCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhc
Q 004774 404 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (731)
Q Consensus 404 ~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~~Wn~~~ 460 (731)
..+.+.|+.| .+.++...|...|....
T Consensus 383 ------------------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 383 ------------------------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred ------------------------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 1457788887 78999999997776543
No 144
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.35 E-value=1.7e-07 Score=104.88 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=82.7
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
.-+.+|.|.|+.|+++-+.|.+|. +||||.|++..
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~ 981 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFR 981 (1103)
T ss_pred ccccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccc
Confidence 456779999999999999999887 99999999965
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEeecCCC-----CeEEEEEEEcCCCC-CceeEEEeccccccc
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~~~~~-----~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~ 148 (731)
..+++|+|+++|.||+|+|.|.|.++... .-|.|+|+|+|-++ ++|-|++.+-|.++.
T Consensus 982 fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 982 FPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 66789999999999999999999998852 34799999999998 899999999998876
No 145
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.35 E-value=1.4e-07 Score=63.45 Aligned_cols=26 Identities=19% Similarity=0.014 Sum_probs=24.5
Q ss_pred CCCCCccccCCCceeeeccccccccc
Q 004774 685 EAPKDVLANNGDKMLGISFSNFFMRI 710 (731)
Q Consensus 685 ~~lHaK~~ivDd~~~~vGS~Nld~RS 710 (731)
..+|+|++|+|+++++|||+|++.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 46899999999999999999999987
No 146
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.31 E-value=1.8e-07 Score=104.57 Aligned_cols=92 Identities=20% Similarity=0.441 Sum_probs=76.4
Q ss_pred eeeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCC-------------------------------------CCc
Q 004774 94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF-------------------------------------GAQ 135 (731)
Q Consensus 94 ~~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~-------------------------------------~~~ 135 (731)
+-|.|+++|.||.|+|+|.|.+.... ..+.+.+||+|-- .|+
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 46889999999999999999998865 4588999987621 168
Q ss_pred eeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCCc
Q 004774 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (731)
Q Consensus 136 ~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~~~~p~ 187 (731)
|+|.+.|||.+++. ...+.||.| .++...++..|.+++.++....+.+..
T Consensus 259 FLGciNipl~EiP~-~Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPP-DGLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred cccccccchhcCCc-chHHHHhcc-CcccccccccceEEEEEEEeeeccccc
Confidence 99999999999984 357899999 677777788999999999888766554
No 147
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.13 E-value=2e-06 Score=100.88 Aligned_cols=108 Identities=20% Similarity=0.420 Sum_probs=89.1
Q ss_pred ceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC
Q 004774 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (731)
Q Consensus 10 ~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~ 89 (731)
+.+.|-+|+|.|-|.-|++|+-..- |- .+||||+..+.
T Consensus 1517 LsIsY~~~~LtImV~H~K~L~~Lqd-----------------------------g~-------------~P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1517 LSISYNNGTLTIMVMHAKGLALLQD-----------------------------GQ-------------DPDPYVKTYLL 1554 (1639)
T ss_pred EEEEEcCceEEEEhhhhcccccccC-----------------------------CC-------------CCCcceeEEec
Confidence 4466889999999999999963221 11 28999999994
Q ss_pred C----eeeeeeccccCCCCCeEeeEEEEe-ecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 90 Q----ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 90 ~----~~~~~T~v~~~~~~P~wne~f~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
. ..+.||+|+++|.+|.|||+.+.. .+.. .+.|.++||..+.+. ..++|.+.|||..+....+..+||.|
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred CCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 3 556799999999999999999877 3332 367999999998887 89999999999999877777799999
No 148
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.95 E-value=1.6e-05 Score=92.81 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=90.6
Q ss_pred HHHHHHHHhccc-----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCh
Q 004774 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (731)
Q Consensus 564 ~ayl~~I~~Ak~-----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~ 638 (731)
...+..|++|.+ .|.|+ -|-+.... .|+.+|.+| +++|++|+|++-.++--|-...
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~t-lYr~~~~s----------------~ii~aL~~A--a~~Gk~V~v~veLkArfde~~n 402 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQT-LYRTSKDS----------------PIIDALIEA--AENGKEVTVVVELKARFDEEAN 402 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEE-EEEecCCc----------------HHHHHHHHH--HHcCCEEEEEEEehhhccchhh
Confidence 567789999998 79998 46665431 789999999 7799999999996653221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCc-------eeeecccccccccc
Q 004774 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDK-------MLGISFSNFFMRIE 711 (731)
Q Consensus 639 ~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~-------~~~vGS~Nld~RS~ 711 (731)
-.+.+.|.++|++ .+|++. .-..|||+++||++ ++.+||.|++....
T Consensus 403 -----------------i~wa~~le~aG~~-------viyg~~--~~k~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta 456 (672)
T TIGR03705 403 -----------------IRWARRLEEAGVH-------VVYGVV--GLKTHAKLALVVRREGGELRRYVHLGTGNYHPKTA 456 (672)
T ss_pred -----------------HHHHHHHHHcCCE-------EEEcCC--CeeeeeEEEEEEEeeCCceEEEEEecCCCCCCccc
Confidence 1233568899995 366653 34689999999974 79999999999999
Q ss_pred ccccceeEEEeccccc
Q 004774 712 GSQKCCHIHIFANSFL 727 (731)
Q Consensus 712 ~~n~E~~~~i~~~~~~ 727 (731)
.+-++++++..+++..
T Consensus 457 ~~y~D~~l~t~~~~i~ 472 (672)
T TIGR03705 457 RLYTDLSLFTADPEIG 472 (672)
T ss_pred ccccceeEEEeChHHH
Confidence 9999999987777654
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.94 E-value=8.4e-06 Score=74.12 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=64.5
Q ss_pred CCcEEEEEE---CCeeeeeeccccCCCCCeEeeEEEEeecC----------------CCCeEEEEEEEcCCC--------
Q 004774 80 SDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF-------- 132 (731)
Q Consensus 80 ~d~yv~v~l---~~~~~~~T~v~~~~~~P~wne~f~~~~~~----------------~~~~l~~~v~d~~~~-------- 132 (731)
.++||++.+ ++.+..+|+++.++.-|.||.++.|+++- ...++.|+||..+.-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 899999996 34566799999999999999999999772 135689999986533
Q ss_pred ---CCceeEEEeccccccc-CCceeEEEEEc
Q 004774 133 ---GAQIIGTAAIPAHTIA-TGELISRWYDI 159 (731)
Q Consensus 133 ---~~~~iG~~~i~l~~~~-~~~~~~~w~~l 159 (731)
+|-.+|.+.||+.++. ....+.+||++
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2558999999999987 34467899985
No 150
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.91 E-value=1.9e-05 Score=89.22 Aligned_cols=109 Identities=17% Similarity=0.362 Sum_probs=84.0
Q ss_pred cCCCcEEEEEECC---eeeeeeccccCCCCCeEeeEEEEeecCC----------------CCeEEEEEEEc-CCCC-Cce
Q 004774 78 ITSDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDD-DVFG-AQI 136 (731)
Q Consensus 78 ~~~d~yv~v~l~~---~~~~~T~v~~~~~~P~wne~f~~~~~~~----------------~~~l~~~v~d~-~~~~-~~~ 136 (731)
+.+|||++|...+ ....+|+++++|.+|.|||.|.|.+... ...|.+++|+. +... ++|
T Consensus 149 ~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~F 228 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVF 228 (800)
T ss_pred CCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhh
Confidence 3389999999865 2225999999999999999999998776 24578999994 4444 899
Q ss_pred eEEEecccccccCCceeEEEEEccCC-CCC---CCCCCceEEEEEEEeecCCCC
Q 004774 137 IGTAAIPAHTIATGELISRWYDIIAP-SGS---PPKPGASIQLELKFTPCDKNP 186 (731)
Q Consensus 137 iG~~~i~l~~~~~~~~~~~w~~l~~~-~~~---~~~~~g~L~lsl~y~p~~~~p 186 (731)
+|++.+|+..+........||.|.-. +|+ .....|.+++.++|+...-.|
T Consensus 229 lGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 229 LGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred ceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 99999999988866667899999521 221 234578999999999865444
No 151
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.86 E-value=0.0002 Score=76.26 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhh--cCCEEEEEEeCCC-CccCccCc
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSE--EGVRVLLLVWDDK-TSHDKLGV 317 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~--rGVkVriLv~D~~-gs~~~~~~ 317 (731)
.++|+.+...|.+|++.|+|..--+. . ..+.|.+.|..+-+ .-.+|.||+ |.. |....+.-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG------~---------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLG------K---------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccc------h---------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 68999999999999999999855331 1 12678888888876 489999997 886 33322111
Q ss_pred cCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccc-ccc---ccccccceeEEeccCCCCCCcceEEEEccccC
Q 004774 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-IVG---TIFTHHQKCVLVDTQASGNNRKITAFIGGIDL 393 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~-~~~---~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI 393 (731)
.+.... ..-.++. ...|++.++. -|.- +.+.+.. +.+ ...-.|-||.-+|+. .+.-|.|+
T Consensus 102 ~s~llp---~~l~kkf--~e~vd~~lyh-tp~L-rg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanl 165 (469)
T KOG3964|consen 102 CSALLP---VWLGKKF--PERVDESLYH-TPFL-RGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANL 165 (469)
T ss_pred chhhch---HHHhhhh--hhhhceeeec-Chhh-hhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccc
Confidence 100000 0011111 1234444321 1110 0010000 111 124669999999995 47889999
Q ss_pred CCCCCCCC
Q 004774 394 CDGRYDTP 401 (731)
Q Consensus 394 ~~~r~d~~ 401 (731)
++.|+.+.
T Consensus 166 s~dyfTNR 173 (469)
T KOG3964|consen 166 SNDYFTNR 173 (469)
T ss_pred hhhhhccc
Confidence 99777553
No 152
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.74 E-value=7.2e-06 Score=54.78 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=17.1
Q ss_pred CCCCccccCCCceeeeccccccccc
Q 004774 686 APKDVLANNGDKMLGISFSNFFMRI 710 (731)
Q Consensus 686 ~lHaK~~ivDd~~~~vGS~Nld~RS 710 (731)
..|.|++|||+++++|||+||+.|+
T Consensus 4 ~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 4 SHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp EE---EEEETTTEEEEE---SSHHH
T ss_pred ceeeEEEEEcCCEEEECceecCCCC
Confidence 4799999999999999999999875
No 153
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.65 E-value=0.00047 Score=71.85 Aligned_cols=189 Identities=16% Similarity=0.122 Sum_probs=109.3
Q ss_pred EEEEeecCCCCccccccCCCCCCCCcccccCCCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcc
Q 004774 176 ELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAH 255 (731)
Q Consensus 176 sl~y~p~~~~p~~~~gi~~~~e~~gv~~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak 255 (731)
+.+|.|..-+-.-=.--.+||+ ......-.++++|..-. .+.. ..+=+.+...|.+|+
T Consensus 90 S~TYwP~~SD~~~P~LdLGWP~-------~~~~~g~Tr~~vy~qPp--~~~~-------------p~IKE~vR~~I~~A~ 147 (284)
T PF07894_consen 90 SGTYWPMQSDTEPPPLDLGWPE-------TPSYKGVTRATVYFQPP--KDGQ-------------PHIKEVVRRMIQQAQ 147 (284)
T ss_pred CcccCCCcCCCCCCCCCCCCCC-------CCcccCCceEEEEeCCC--CCCC-------------CCHHHHHHHHHHHhc
Confidence 7889886433221111234454 12234457888988741 1111 245667889999999
Q ss_pred cEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhc
Q 004774 256 HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFK 335 (731)
Q Consensus 256 ~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~ 335 (731)
+-|-|.-=.|+ |. .-|.++|.++-+|||-||||+ |..+...++..... --.....
T Consensus 148 kVIAIVMD~FT-------D~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~--------~~v~~~~ 202 (284)
T PF07894_consen 148 KVIAIVMDVFT-------DV---------DIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEK--------LGVNLQH 202 (284)
T ss_pred ceeEEEeeccc-------cH---------HHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHH--------CCCChhh
Confidence 99999877664 11 457776665559999999998 99865322110000 0000111
Q ss_pred CCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccC
Q 004774 336 HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKD 415 (731)
Q Consensus 336 ~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~ 415 (731)
-.|++||.-.. ..|..+.-.+.-...|+|+++||+. .+.+|.--.+.. +..-|
T Consensus 203 ~~nmrVRsv~G-----~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs--~~~~~------------ 255 (284)
T PF07894_consen 203 LKNMRVRSVTG-----CTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWS--SSRVH------------ 255 (284)
T ss_pred cCCeEEEEecC-----CeeecCCCCeeeCcccceeEEEecc--------cccccccceeec--ccccc------------
Confidence 24555552110 0011000112345779999999998 888887654441 11111
Q ss_pred CCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHH
Q 004774 416 DFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRW 456 (731)
Q Consensus 416 dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~W 456 (731)
+-+-..++|.+|....+.|..-.
T Consensus 256 ------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 256 ------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred ------------------cceeEEEeccccchHhHHHHHHH
Confidence 23578899999999999998654
No 154
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.64 E-value=4.5e-05 Score=51.24 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.8
Q ss_pred ccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 364 ~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
.++|+|++|||++ .+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCCC
Confidence 4789999999998 999999999873
No 155
>PF13918 PLDc_3: PLD-like domain
Probab=97.45 E-value=0.00057 Score=66.53 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=53.9
Q ss_pred CCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHh-hcCCEEEEEE
Q 004774 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV 305 (731)
Q Consensus 227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA-~rGVkVriLv 305 (731)
+|..+...|++. =.++++..|+.|+++|+|+---+-|-+. ...+.+.|| .|.++|.+|| +|||+||+|+
T Consensus 71 SPp~~~~~gRT~----DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~YWP-----~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRTL----DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNRYWP-----VIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCCc----HHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCCcch-----hHHHHHHHHHHHcCCeEEEEE
Confidence 677777778763 3789999999999999998777777442 222333444 7999999998 8999999998
No 156
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00042 Score=77.31 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=69.2
Q ss_pred CCcEEEEEECC------eeeeeeccccCCCCCeEeeEEEEeecCCC----CeEEEEEEEcCCCC-CceeEEEeccccccc
Q 004774 80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (731)
Q Consensus 80 ~d~yv~v~l~~------~~~~~T~v~~~~~~P~wne~f~~~~~~~~----~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~ 148 (731)
--|||+|.+-+ .+++.|+.+.++..|.+||+|.|-+.+.. .+|.|.|+|..+.+ |+.+|.+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 45999999833 55678899999999999999999988753 45899999999988 899999999999998
Q ss_pred CCceeEEEEEc
Q 004774 149 TGELISRWYDI 159 (731)
Q Consensus 149 ~~~~~~~w~~l 159 (731)
.......|++|
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 77777889999
No 157
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.35 E-value=0.00012 Score=62.02 Aligned_cols=77 Identities=13% Similarity=0.319 Sum_probs=58.0
Q ss_pred CCcEEE--EEECCeeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCCCceeEEEecccccccCCceeE
Q 004774 80 SDPYVT--VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELIS 154 (731)
Q Consensus 80 ~d~yv~--v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~ 154 (731)
..-|++ +.++.....||.+.+.+.||+|.|+|.|.+... ...|.|+|++ .+-+.+.||.+.+.++++. .++.+
T Consensus 21 ~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~ 98 (103)
T cd08684 21 PTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETD 98 (103)
T ss_pred CeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhh
Confidence 344665 334555557999999999999999999997653 3457888888 3445899999999999876 44566
Q ss_pred EEEE
Q 004774 155 RWYD 158 (731)
Q Consensus 155 ~w~~ 158 (731)
+|..
T Consensus 99 HW~e 102 (103)
T cd08684 99 HWLE 102 (103)
T ss_pred hhhc
Confidence 7864
No 158
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00042 Score=73.60 Aligned_cols=109 Identities=23% Similarity=0.402 Sum_probs=87.6
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
-.|.|+|.|++|++|..+...+. .++|||+|.+..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c 305 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFC 305 (405)
T ss_pred ccCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCce
Confidence 35789999999999976432111 389999999843
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEc-CCCC-CceeEEEecccccccCCc-eeEEEEEccCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSG 164 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~-~~~~-~~~iG~~~i~l~~~~~~~-~~~~w~~l~~~~~ 164 (731)
..+.+|+...++..|.+.....|.-.++...|.++||-. .... +.|+|.+.+-++++.... ....||+|.....
T Consensus 306 ~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 306 IAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred ecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 445699999999999999999999999999999999864 3444 799999999999998776 7889999965443
No 159
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00032 Score=73.33 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=79.5
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----~ 91 (731)
...|.|++++|..|..+|..+. +||||...+.. .
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~ 269 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKK 269 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchh
Confidence 3458999999999999998887 99999999853 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
-+.||.+.+++.+|.|||+|.+.+.+.. ..+.|.|||.+.-+ .+++|-+... .+..++...+|+.-
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g--~~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLG--GYRRGEVHKHWGRC 339 (362)
T ss_pred hcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccc--ccccchhhcCcccc
Confidence 3569999999999999999999988863 55899999998875 7888875543 33455666666544
No 160
>PLN02866 phospholipase D
Probab=97.15 E-value=0.00084 Score=80.51 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCC
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDPKT 637 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~--g~~~~ 637 (731)
.....+++.+|.+||++|||+.=.|-|.-..+.+ ..-..+..|...|.++ +++||+|+||+=.... ...++
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp-----~~D~~g~RL~~lL~rK--AkrGVkVrVLLyD~vg~al~~~S 415 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP-----FHDHESSRLDSLLEAK--AKQGVQIYILLYKEVALALKINS 415 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec-----CCCchHHHHHHHHHHH--HHCCCEEEEEEECccccccccCc
Confidence 5678999999999999999954333222111100 0012345788888887 7799999998432111 00001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--hcccCC--CcCCeE-EEEeccCCCCCCCCccccCCCceeeeccccc
Q 004774 638 NTVQEILFWQSQTMQMMYSVVAQELR--EMQVDA--HPQDYL-SFYCLGKREEAPKDVLANNGDKMLGISFSNF 706 (731)
Q Consensus 638 ~~v~~~~~~~~~ti~~~~~~~~~~Ll--~~Gv~~--~~~~yi-~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nl 706 (731)
. ...+.|. ..||++ .|.... ..+.+ .-|-|++|||++++++|..|+
T Consensus 416 ~------------------~~k~~L~~lh~gI~V~r~P~~~~~~~ln~-----RhHRKIVVIDg~IAFvGGiNL 466 (1068)
T PLN02866 416 V------------------YSKRRLLGIHENVKVLRYPDHFSSGVYLW-----SHHEKLVIVDYQICFIGGLDL 466 (1068)
T ss_pred h------------------hhHHHHHHhCCCeEEEecCcccccCcccc-----cCCCCeEEECCCEEEecCccc
Confidence 0 0112232 356641 111000 00111 369999999999999999999
No 161
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.00 E-value=0.00051 Score=73.48 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=79.8
Q ss_pred CCcEEEEEEC----CeeeeeeccccCCCCCeEeeEEEEeecCC------------CCeEEEEEEEcCCCC--CceeEEEe
Q 004774 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (731)
Q Consensus 80 ~d~yv~v~l~----~~~~~~T~v~~~~~~P~wne~f~~~~~~~------------~~~l~~~v~d~~~~~--~~~iG~~~ 141 (731)
.|.|++++.. .....+|.|++.+.+|.|+|.|.+.+... ...+.|+++.+..|- |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 7889988763 23446999999999999999999998772 235799999987663 89999999
Q ss_pred cccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 004774 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (731)
Q Consensus 142 i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~ 180 (731)
+.|.-|...-+.+..++|.+.++ ..+|.|.++++.-
T Consensus 468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccccc---ccCCeeEEEEEEe
Confidence 99999988888889999966543 3578998888753
No 162
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.91 E-value=0.00055 Score=80.36 Aligned_cols=85 Identities=24% Similarity=0.450 Sum_probs=73.9
Q ss_pred EEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee-eeeec
Q 004774 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR 97 (731)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~-~~~T~ 97 (731)
++|.|++|-+|.+.|..|. +|||+.+.++... .-++.
T Consensus 615 vrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~~ 652 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRAH 652 (1105)
T ss_pred EEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhhh
Confidence 6789999999999888876 9999999998733 34778
Q ss_pred cccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccc
Q 004774 98 VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAH 145 (731)
Q Consensus 98 v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~ 145 (731)
-+.++.+|+|++.|.+...-+. ..++++|+|+|..+ |+.||+..+.|+
T Consensus 653 yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 653 YIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred cCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 8899999999999999977764 55799999999998 999999999876
No 163
>PLN02964 phosphatidylserine decarboxylase
Probab=96.69 E-value=0.0025 Score=74.15 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=69.7
Q ss_pred CCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCe-EEEEEEEcCCCC-CceeEEEecccccccCCceeE--
Q 004774 79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS-- 154 (731)
Q Consensus 79 ~~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~-l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~-- 154 (731)
..|+|..+..-+.++.||.+.++|.+|+|||...|.+.+...+ ..|.|||.+.++ ++++|.+.++|..+...+..+
T Consensus 67 ~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elk 146 (644)
T PLN02964 67 FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESAC 146 (644)
T ss_pred cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHH
Confidence 3789888877777779999999999999999999998876544 499999999998 899999999888776544322
Q ss_pred EEEEccCCCC
Q 004774 155 RWYDIIAPSG 164 (731)
Q Consensus 155 ~w~~l~~~~~ 164 (731)
+-|.++++++
T Consensus 147 eaF~lfD~dg 156 (644)
T PLN02964 147 ESFDLLDPSS 156 (644)
T ss_pred HHHHHHCCCC
Confidence 2366777765
No 164
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.00068 Score=70.90 Aligned_cols=126 Identities=22% Similarity=0.279 Sum_probs=91.5
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----ee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----~~ 92 (731)
..++.+|.+|++|.+++..+. .|||++..+.. ..
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~ 130 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLN 130 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhh
Confidence 458899999999999998887 89999999854 22
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCc--eeEEEEEccCCCCC
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDIIAPSGS 165 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~--~~~~w~~l~~~~~~ 165 (731)
..+|++..++.||.|||.-....-.. ...+++.|.|.+.+. .+++|+..+++.-+.+.. ....|+.-.-+.++
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 35888999999999999876663222 345678888888887 899999998888776432 23335433222111
Q ss_pred ---C-CCCCceEEEEEEEeecCC
Q 004774 166 ---P-PKPGASIQLELKFTPCDK 184 (731)
Q Consensus 166 ---~-~~~~g~L~lsl~y~p~~~ 184 (731)
+ .++.|+|.+++.|-....
T Consensus 211 ad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred ccccchhhccceeeeeccCcCCC
Confidence 1 256899999998876543
No 165
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.34 Score=55.63 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=63.6
Q ss_pred chHHHHHHHHHhccc-----EEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccC
Q 004774 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~ 316 (731)
+.|+.+.+-|++|-. .|-++-|.. |+...|.++|++||+.|-+|-+|| +.-..
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqTLYRt----------------~~dSpIV~ALi~AA~nGKqVtvlV--ELkAR---- 409 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQTLYRT----------------SKDSPIVRALIDAAENGKQVTVLV--ELKAR---- 409 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEEEEec----------------CCCCHHHHHHHHHHHcCCeEEEEE--EEhhh----
Confidence 678889999999852 455565532 234799999999999999999998 22111
Q ss_pred ccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccC
Q 004774 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ 376 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~ 376 (731)
+-.+.+-.+.+.|+.+||+|.+ ..+ .+.-|-|+++|=-+
T Consensus 410 -----FDEE~NI~WAk~LE~AGvhVvy--G~~--------------glKtHAKm~lVvRr 448 (696)
T COG0855 410 -----FDEEANIHWAKRLERAGVHVVY--GVV--------------GLKTHAKMLLVVRR 448 (696)
T ss_pred -----cChhhhhHHHHHHHhCCcEEEe--ccc--------------ceeeeeeEEEEEEe
Confidence 1001123467889999999985 122 13459999998655
No 166
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.20 E-value=0.028 Score=58.80 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
.+|.+...++|++|++-|=|..==|.-. .|..-|..|. .+|+|-|+|++-...
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa-~kR~VpVYiLLD~~~-------- 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAA-NKRGVPVYILLDEQN-------- 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHH-HhcCCcEEEEechhc--------
Confidence 5799999999999999999998777543 5667777772 379999999998642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEE-------EEeccCC---CCCCCCccccCCCceeeecccccccc
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLS-------FYCLGKR---EEAPKDVLANNGDKMLGISFSNFFMR 709 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~-------~y~~~~~---~~~lHaK~~ivDd~~~~vGS~Nld~R 709 (731)
++ .|.+.-.+.+|...--..+. -|+.+.. .+.++.|.|+||.+.++-||.-|-.-
T Consensus 186 ~~---------------~Fl~Mc~~~~v~~~~~~nmrVRsv~G~~y~~rsg~k~~G~~~eKF~lvD~~~V~~GSYSFtWs 250 (284)
T PF07894_consen 186 LP---------------HFLEMCEKLGVNLQHLKNMRVRSVTGCTYYSRSGKKFKGQLKEKFMLVDGDKVISGSYSFTWS 250 (284)
T ss_pred Ch---------------HHHHHHHHCCCChhhcCCeEEEEecCCeeecCCCCeeeCcccceeEEEecccccccccceeec
Confidence 11 11111122333200000011 1222222 13499999999999999999999999
Q ss_pred ccccccceeEEEecc
Q 004774 710 IEGSQKCCHIHIFAN 724 (731)
Q Consensus 710 S~~~n~E~~~~i~~~ 724 (731)
|-.+|.-+-.++.++
T Consensus 251 ~~~~~r~~~~~~tGq 265 (284)
T PF07894_consen 251 SSRVHRNLVTVLTGQ 265 (284)
T ss_pred ccccccceeEEEecc
Confidence 999998877666543
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.00 E-value=0.1 Score=56.53 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=81.5
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC--------CCeEEEEEEEcCCC-C-CceeEEEecccccc--
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVF-G-AQIIGTAAIPAHTI-- 147 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~--------~~~l~~~v~d~~~~-~-~~~iG~~~i~l~~~-- 147 (731)
-.-.+...+++.. -.|-.+..+..|.||-+..+.+... ...|+++++..+.. . .+.||.+.++|...
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 4578888899877 4788888899999999999997763 46799999998833 3 79999999999988
Q ss_pred -cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEeecCC
Q 004774 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (731)
Q Consensus 148 -~~~--~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~~~ 184 (731)
..+ .....||+|+..+++-.+...+|.+++.-.....
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 544 4567899999875443345778888888777554
No 168
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.94 E-value=0.033 Score=57.58 Aligned_cols=50 Identities=30% Similarity=0.278 Sum_probs=40.3
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D 307 (731)
+...+.+.+.|++|+++|+|..|. + . -..|.+.|.+|.+|||+|+++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~---~------~--------l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP---E------F--------LEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G---G------G--------HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH---H------H--------HHHHHHHHHHHHHCCCEEEEEEeC
Confidence 468999999999999999999872 1 1 258999999999999999999955
No 169
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.93 E-value=0.032 Score=65.19 Aligned_cols=101 Identities=25% Similarity=0.401 Sum_probs=76.8
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
.+-+++.|+|+++.-|..++ ...||+|.+-+
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence 56778999999999887644 56899999833
Q ss_pred ---eeeeeeccccC-CCCCeEee-EEEEe--ecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCC
Q 004774 91 ---ATVARTRVLKN-SQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 91 ---~~~~~T~v~~~-~~~P~wne-~f~~~--~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
.+..+|++..+ +.||+|+| .|.|. +.+....|+|.|++.+ ..+||+--+|+..+..|. +.+.|....
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~ 807 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSES 807 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCC
Confidence 34568888776 99999996 47887 5556778999999874 469999999999888664 445564444
Q ss_pred CCC
Q 004774 164 GSP 166 (731)
Q Consensus 164 ~~~ 166 (731)
++|
T Consensus 808 Nqp 810 (1189)
T KOG1265|consen 808 NQP 810 (1189)
T ss_pred CCc
Confidence 444
No 170
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.15 Score=50.00 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~ 320 (731)
+...+++...|+.|++...+..||-. .| -..+.+.|..+...||++|||- ++.-++.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~--------------sG-~sll~~~L~d~~~Kgvkgkilt-s~YlnfT------- 94 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE--------------SG-LSLLFDLLLDLVNKGVKGKILT-SDYLNFT------- 94 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC--------------cc-HHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence 35899999999999999988888753 12 3688999999999999999996 6653322
Q ss_pred CcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 004774 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (731)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~ 400 (731)
....+.+++.-.+|+++++. . .+..+|-|-.|.--. ....|++|..|+++.-.-.
T Consensus 95 -----dP~al~~Ll~~~nve~r~~~-~--------------~~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 95 -----DPVALRKLLMLKNVELRVST-I--------------GSANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred -----CHHHHHHHHhhhccceEEEe-c--------------CccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 12345666666779988632 1 124558887775432 2247999999999965432
Q ss_pred CCCCCcCCCCccccCCCCCCCCCCCCCCCCCCce-eeeeeEeChHHHHHHHHHHHHHH
Q 004774 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR 457 (731)
Q Consensus 401 ~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWh-Dv~~~i~Gpav~dl~~~F~~~Wn 457 (731)
. ..|- -++..-.|..|..+...|...|.
T Consensus 150 n-----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 N-----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred C-----------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 1221 23455678999999999999996
No 171
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=95.90 E-value=0.32 Score=52.27 Aligned_cols=274 Identities=16% Similarity=0.177 Sum_probs=147.5
Q ss_pred chHHHHHHHHHhcc-----cEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccC
Q 004774 242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak-----~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~ 316 (731)
+.|+.+.+-|++|- .+|.++-|... ....+.++|++||+.|=+|-++| +.-...
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a----------------~~S~iv~aLi~AA~nGK~Vtv~v--ELkARF--- 76 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVA----------------SNSPIVNALIEAAENGKQVTVLV--ELKARF--- 76 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-----------------TT-HHHHHHHHHHHTT-EEEEEE--STTSSS---
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecC----------------CCCHHHHHHHHHHHcCCEEEEEE--EEeccc---
Confidence 45777888888874 68888877542 23799999999999999999998 321110
Q ss_pred ccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
. ...+-.+.+.|+.+||+|.+ ..|. +.-|-|+++|=-+..+ .-+..+++|-=|....
T Consensus 77 ---D---Ee~Ni~Wa~~Le~aGv~Viy--G~~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~ 133 (352)
T PF13090_consen 77 ---D---EENNIHWAKRLEEAGVHVIY--GVPG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK 133 (352)
T ss_dssp ---T---TCCCCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SSTT
T ss_pred ---c---HHHHhHHHhhHHhcCeEEEc--CCCC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc
Confidence 0 00012346778999999985 2232 2349999999654222 1223555544333220
Q ss_pred CCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhcccchhhhhhcccccc
Q 004774 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRVSHW 475 (731)
Q Consensus 397 r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~ 475 (731)
+ ..-+-|..+.-.-| .+.|+...|..- ++..
T Consensus 134 -------------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~l----~~~~------------ 165 (352)
T PF13090_consen 134 -------------------------------T-ARIYTDLSLFTADPEIGADVAKLFNYL----TGYS------------ 165 (352)
T ss_dssp -------------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHHH----CTTT------------
T ss_pred -------------------------------c-hhheecceeecCCHHHHHHHHHHHHHH----hCCC------------
Confidence 1 13467988888777 688898888542 1110
Q ss_pred cccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhcccc
Q 004774 476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKD 555 (731)
Q Consensus 476 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~ 555 (731)
. + +. + -.++-+ |..
T Consensus 166 ----------~-----~------------~~---------------~-~~Llva---------P~~-------------- 179 (352)
T PF13090_consen 166 ----------K-----P------------PK---------------Y-KHLLVA---------PFN-------------- 179 (352)
T ss_dssp ----------S------------------S------------------SS-EEC---------TTT--------------
T ss_pred ----------c-----c------------cc---------------c-cceeEC---------hHH--------------
Confidence 0 0 00 0 001111 211
Q ss_pred ccchhHHHHHHHHHHHhccc----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 004774 556 VVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (731)
Q Consensus 556 ~~~e~sI~~ayl~~I~~Ak~----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~ 631 (731)
....+.+..-.-|.+|+. +|.+- ++++-..++.++|-+| .+.||+|.+++=+.-
T Consensus 180 --lr~~~~~lI~~Ei~~a~~G~~a~I~~K------------------~NsL~D~~iI~~Ly~A--S~AGV~I~LiVRGiC 237 (352)
T PF13090_consen 180 --LRKKLLELIDREIENAKAGKPARIIAK------------------MNSLTDPEIIDKLYEA--SQAGVKIDLIVRGIC 237 (352)
T ss_dssp --CHHHHHHHHHHHHHHHCTTS-EEEEEE------------------ES-B--HHHHHHHHHH--HHTTEEEEEEESS-B
T ss_pred --HHHHHHHHHHHHHHHHhCCCCcEEEEE------------------ecCCCCHHHHHHHHHH--HhCCCEEEEEEeccc
Confidence 123445555555565554 34332 2344445899999999 568999999986531
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCC---Cceeeeccccccc
Q 004774 632 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNG---DKMLGISFSNFFM 708 (731)
Q Consensus 632 ~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivD---d~~~~vGS~Nld~ 708 (731)
. +.-||+ ..++.|.+.+.-. .-.-||.++.+- +.-+++|||-+-.
T Consensus 238 ---------------------c---------L~Pgi~-g~SeNI~V~SIVg-RfLEHsRi~~F~n~g~~~~yisSADwM~ 285 (352)
T PF13090_consen 238 ---------------------C---------LRPGIP-GLSENIRVISIVG-RFLEHSRIYYFGNGGDEEVYISSADWMT 285 (352)
T ss_dssp -------------------------------C-TTSC-TCCTTEEEEEE-S-SSEE--EEEEE-GCCS-EEEEESS-BSH
T ss_pred ---------------------c---------cCCCCC-CCCCCEEEEEecc-cccchhheeeecCCCCCeEEEEcccccc
Confidence 0 112442 2233444443321 112566666552 5679999999999
Q ss_pred cccccccceeEEEeccccc
Q 004774 709 RIEGSQKCCHIHIFANSFL 727 (731)
Q Consensus 709 RS~~~n~E~~~~i~~~~~~ 727 (731)
|-+.-=-|+.+=|+|+...
T Consensus 286 RNl~rRVEv~~PI~D~~lk 304 (352)
T PF13090_consen 286 RNLDRRVEVAFPIYDPRLK 304 (352)
T ss_dssp HHHHTCEEEEEE--SHHHH
T ss_pred CCCCeeEEEEeEECCHHHH
Confidence 9998889999999887643
No 172
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.51 E-value=0.003 Score=74.45 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=81.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
.|..+++.|.+|+.|...++.+. +|||..|..-++. +
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs-~ 240 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQS-K 240 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhccccc-c
Confidence 34456777788888887766554 9999999988766 5
Q ss_pred eeccccCCCCCeEeeEEEEe---ecCC-------CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCC
Q 004774 95 RTRVLKNSQEPVWNEHFNIP---LAHP-------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~---~~~~-------~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
.|-++.+|.+|.||.+..|. +... -..+.++|+|.+... ++++|+......-.. ....-.|+++....
T Consensus 241 ~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~-~~p~lkw~p~~rg~ 319 (1105)
T KOG1326|consen 241 ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMV-QCPALKWVPTMRGA 319 (1105)
T ss_pred eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEe-cCCccceEEeeccc
Confidence 89999999999999998887 2221 133689999999988 999999776544333 24456899994332
Q ss_pred CCCCCCCceEEEE
Q 004774 164 GSPPKPGASIQLE 176 (731)
Q Consensus 164 ~~~~~~~g~L~ls 176 (731)
...|++.++
T Consensus 320 ----~l~gd~l~a 328 (1105)
T KOG1326|consen 320 ----FLDGDVLIA 328 (1105)
T ss_pred ----ccccchhHH
Confidence 234555443
No 173
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.12 E-value=0.59 Score=44.04 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=68.5
Q ss_pred CcEEEEEECCee--eeeecccc-CCCCCeEeeEEEEeecCC---------CCeEEEEEEEcCCCCC-ceeEEEecccccc
Q 004774 81 DPYVTVVVPQAT--VARTRVLK-NSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHTI 147 (731)
Q Consensus 81 d~yv~v~l~~~~--~~~T~v~~-~~~~P~wne~f~~~~~~~---------~~~l~~~v~d~~~~~~-~~iG~~~i~l~~~ 147 (731)
-.||+...+... ..+|.... ....-.|||+|.+++.-. ...+.|.|+....-+. ..+|.+.|.|.++
T Consensus 25 ~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 25 KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 345555544432 23444333 366789999999985431 2347888888754443 5999999999999
Q ss_pred cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCCc
Q 004774 148 ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (731)
Q Consensus 148 ~~~--~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~~~~p~ 187 (731)
... +....-++|... ......|.+++.+.+...++.
T Consensus 105 ~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 105 ANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPD 142 (143)
T ss_pred hCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCC
Confidence 863 455667777332 245789999999998776654
No 174
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.91 E-value=0.036 Score=62.48 Aligned_cols=115 Identities=23% Similarity=0.307 Sum_probs=75.4
Q ss_pred CCcEEEEEEC---C--eeeeeeccccCCCCCeEeeEEEEeecC-----CCCeEEEEEEEcCCCC-CceeEEEeccccccc
Q 004774 80 SDPYVTVVVP---Q--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (731)
Q Consensus 80 ~d~yv~v~l~---~--~~~~~T~v~~~~~~P~wne~f~~~~~~-----~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~ 148 (731)
+|||..+.-- + ...++|.+++++.+|.|-+ |.+++.. ....+.+.++|.+..+ +++||++..++.++.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 9999988652 2 5567999999999999984 5555443 3467899999999988 699999999999886
Q ss_pred CCceeEEEEEccCCCCC----CCCCCceEEEEEEEeecCCCCccccccCCCCCC
Q 004774 149 TGELISRWYDIIAPSGS----PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEH 198 (731)
Q Consensus 149 ~~~~~~~w~~l~~~~~~----~~~~~g~L~lsl~y~p~~~~p~~~~gi~~~~e~ 198 (731)
. .....-+.+..+.++ ..+..|++.+. -........|+.-+.++..+
T Consensus 236 ~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~--~~~~~~~~sfld~i~gg~~l 286 (529)
T KOG1327|consen 236 E-PGSPNQIMLINPKKKAKKKSYKNSGQLILD--RFTSLDQYSFLDYIAGGEQL 286 (529)
T ss_pred c-cCCcccccccChhhhhhhhcccccceEEeh--heeehhhhhHHHHHccCcee
Confidence 4 222233344344332 12335555443 22333455666666554443
No 175
>PF13918 PLDc_3: PLD-like domain
Probab=94.64 E-value=0.34 Score=47.46 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 004774 563 QTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEG 633 (731)
Q Consensus 563 ~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g 633 (731)
.+|.++.|..|++||||+=-=|+|.... . -.+.-...|-.+|.+|+ -.|||+|++++..+...
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~-----~--~~~~YWP~ID~ALR~AA-~~R~V~VRlLIS~W~ht 146 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRY-----S--KPNRYWPVIDDALRRAA-IERGVKVRLLISCWKHT 146 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeec-----C--CCCCcchhHHHHHHHHH-HHcCCeEEEEEeecCCC
Confidence 5799999999999999997666664321 0 11122236667777763 36899999999988643
No 176
>PLN03008 Phospholipase D delta
Probab=93.80 E-value=0.13 Score=61.13 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=40.6
Q ss_pred EcCCCCccCC-cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCC----CcHHHHHHHH--hhcCCEEEE
Q 004774 231 PLDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGD----LTLGELLKYK--SEEGVRVLL 303 (731)
Q Consensus 231 ~l~~g~~y~~-~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~----~~l~~~L~~a--A~rGVkVri 303 (731)
.|..|+...- ..+..+.+++|++|||.||||.=.|....+.+..+. ..|.. ..|...|.+| +.++-+|+|
T Consensus 555 ~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~---~~~~~n~I~~eia~kI~~ki~~~e~f~V~I 631 (868)
T PLN03008 555 HLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYR---DAGADNLIPMELALKIVSKIRAKERFAVYV 631 (868)
T ss_pred ccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccccc---ccccccchhHHHHHHHHHHHhCCCCCEEEE
Confidence 3444443322 446889999999999999996433322222211000 01112 4455555555 446889999
Q ss_pred EE
Q 004774 304 LV 305 (731)
Q Consensus 304 Lv 305 (731)
++
T Consensus 632 Vi 633 (868)
T PLN03008 632 VI 633 (868)
T ss_pred EE
Confidence 87
No 177
>PLN02352 phospholipase D epsilon
Probab=93.63 E-value=0.28 Score=58.14 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~Ivl 627 (731)
....+++..+|.+|||+|||+.=-|-|+...-.+ .......-.+..|.+.|.++ +++||+|+||+
T Consensus 186 ~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~-~~~~~p~~~g~~LgdLLk~K--A~eGV~VrLLv 250 (758)
T PLN02352 186 RKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRD-PETDIPHARGVKLGELLKRK--AEEGVAVRVML 250 (758)
T ss_pred HHHHHHHHHHHHhhccEEEEEEEEecCCceeccC-cccccccccchHHHHHHHHH--HHCCCEEEEEE
Confidence 5688999999999999999997444443110000 00000011345788888888 67899999984
No 178
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=93.17 E-value=0.33 Score=57.76 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=24.0
Q ss_pred cceeEEeccCCCCCCcceEEEEccccCCCCCCCCC
Q 004774 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (731)
Q Consensus 367 HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~ 401 (731)
|-|++|||++ .+++|+.||.+.-.++.
T Consensus 703 HsK~mIvDD~--------~vIIGSANINqRSm~G~ 729 (887)
T KOG1329|consen 703 HSKLMIVDDE--------YVIIGSANINQRSMLGN 729 (887)
T ss_pred eeeeEEecCC--------EEEEeecccchhhccCC
Confidence 9999999999 99999999999656553
No 179
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.57 E-value=0.39 Score=46.96 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=69.4
Q ss_pred cCccccccccccCCCcCCCcEEEEEECCeeeeeeccccC--CCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEE
Q 004774 63 DGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140 (731)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~T~v~~~--~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~ 140 (731)
+-.|+..+..+..++.....|++|.++++.+.+|+...- ...-.|||.|.+.+..--..|.++||......+..|+++
T Consensus 20 ~~~~p~~E~~RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v 99 (168)
T PF15625_consen 20 DSQCPRAEQNRRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEV 99 (168)
T ss_pred CccCChhHhhhHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEE
Confidence 334555566667777788999999999988888877654 445678999999998877899999999988779999999
Q ss_pred eccccccc
Q 004774 141 AIPAHTIA 148 (731)
Q Consensus 141 ~i~l~~~~ 148 (731)
.+|+-...
T Consensus 100 ~vpvP~~~ 107 (168)
T PF15625_consen 100 FVPVPGST 107 (168)
T ss_pred EeeCCCCc
Confidence 99986543
No 180
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=92.46 E-value=0.58 Score=45.92 Aligned_cols=119 Identities=13% Similarity=0.010 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
+.|...+...|+.|+.+..+. . |+..... ..+...|..+ ..+||+++|++-..-. ..+|.
T Consensus 38 e~il~~Li~~l~k~~ef~IsV-a-Fit~sG~--------------sll~~~L~d~--~~Kgvkgkilts~Yln--fTdP~ 97 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV-A-FITESGL--------------SLLFDLLLDL--VNKGVKGKILTSDYLN--FTDPV 97 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE-E-EeeCccH--------------HHHHHHHHHH--hcCCceEEEecccccC--ccCHH
Confidence 568999999999999988888 3 6654321 2556677777 7899999999986532 22332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCC---Cceeeeccccccccccccccc
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNG---DKMLGISFSNFFMRIEGSQKC 716 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivD---d~~~~vGS~Nld~RS~~~n~E 716 (731)
+ +++-|+-..|+ +.++.-++ ..+|+|-.+.. .-.++|||+|+-.=-+.-|.|
T Consensus 98 a-----------------l~~Ll~~~nve------~r~~~~~~--~~fH~KgYiFe~~~~~taiiGSsNlt~sALt~n~E 152 (198)
T COG3886 98 A-----------------LRKLLMLKNVE------LRVSTIGS--ANFHTKGYIFEHNTGITAIIGSSNLTDSALTVNEE 152 (198)
T ss_pred H-----------------HHHHHhhhccc------eEEEecCc--cccccceeEEEecceEEEEEccchhhhhhcccCHH
Confidence 1 12222222244 34554432 45898887742 334899999999999999999
Q ss_pred eeEEEec
Q 004774 717 CHIHIFA 723 (731)
Q Consensus 717 ~~~~i~~ 723 (731)
-|+-+..
T Consensus 153 wn~k~s~ 159 (198)
T COG3886 153 WNLKVSS 159 (198)
T ss_pred HHhhhcc
Confidence 8876543
No 181
>PLN02270 phospholipase D alpha
Probab=92.15 E-value=0.39 Score=57.18 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHhccceEEEecccccccccCCCcc--cCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 004774 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSY--KNAGADNLIPMELALKIASKIRANERFAVYVII 627 (731)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~--~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~Ivl 627 (731)
...+.+.+..+|.+|||+|||.-=-|-|.-...... +..+- +..|.+.|.++ +++||+|+||+
T Consensus 207 ~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~----~~~LGeLLk~K--A~eGV~V~iLv 271 (808)
T PLN02270 207 PHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGG----DVTIGELLKKK--ASEGVRVLLLV 271 (808)
T ss_pred hhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecCCCCCCCCC----cchHHHHHHHH--hcCCCEEEEEE
Confidence 356889999999999999999964443331110000 00011 12555666655 77999999999
No 182
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=92.14 E-value=0.7 Score=45.45 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcC
Q 004774 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD 130 (731)
Q Consensus 80 ~d~yv~v~l--~~~~---~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~ 130 (731)
.+.||++.| ++.. ...|+.+.-+.++.|||.+.|++.-. .+.|.|+||+..
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 567888766 4422 23555555567899999999986543 456889999854
No 183
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=92.09 E-value=0.096 Score=56.19 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=70.9
Q ss_pred ceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHH
Q 004774 575 HFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMM 654 (731)
Q Consensus 575 ~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~ 654 (731)
..|.|+ -|=+.... .|+.+|.+| ++.|=+|.+++=.++-=|=...+ .|
T Consensus 37 ~aIk~T-LYR~a~~S----------------~iv~aLi~A--A~nGK~Vtv~vELkARFDEe~Ni-----~W-------- 84 (352)
T PF13090_consen 37 LAIKIT-LYRVASNS----------------PIVNALIEA--AENGKQVTVLVELKARFDEENNI-----HW-------- 84 (352)
T ss_dssp EEEEEE-ESSS-TT-----------------HHHHHHHHH--HHTT-EEEEEESTTSSSTTCCCC-----CC--------
T ss_pred cEEEEE-EEecCCCC----------------HHHHHHHHH--HHcCCEEEEEEEEeccccHHHHh-----HH--------
Confidence 356654 67776542 789999999 66899999999887621111121 13
Q ss_pred HHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCC-------CceeeeccccccccccccccceeEEEeccccc
Q 004774 655 YSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNG-------DKMLGISFSNFFMRIEGSQKCCHIHIFANSFL 727 (731)
Q Consensus 655 ~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivD-------d~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~ 727 (731)
.+.|.++||. .+|++. .--+|||+++|= -+|+.+||-|++.....+=|.++++-.++++.
T Consensus 85 ----a~~Le~aGv~-------ViyG~~--glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~YtD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 85 ----AKRLEEAGVH-------VIYGVP--GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIYTDLSLFTADPEIG 151 (352)
T ss_dssp ----CHHHHHCT-E-------EEE--T--T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCEEEEEEEE--HHHH
T ss_pred ----HhhHHhcCeE-------EEcCCC--ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhheecceeecCCHHHH
Confidence 2468899995 478763 234899999984 37999999999999999999999998887765
Q ss_pred C
Q 004774 728 G 728 (731)
Q Consensus 728 ~ 728 (731)
.
T Consensus 152 ~ 152 (352)
T PF13090_consen 152 A 152 (352)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=91.95 E-value=0.85 Score=44.13 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-----CceeEEEecccc
Q 004774 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (731)
Q Consensus 80 ~d~yv~v~l--~~~~~---~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-----~~~iG~~~i~l~ 145 (731)
.|-||++.+ ++... ..|+-+. ..++.|||-..|++.-. .+.|.|+||+....+ ...+|.+.++|.
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 678888876 33221 1333333 36799999998886543 466899999865321 256888888776
Q ss_pred cccCCceeEEEEEccCCCCCCCCCCceEEEEEEEeec
Q 004774 146 TIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 146 ~~~~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~ 182 (731)
+.. + .| ..|...+.++..|.
T Consensus 105 d~~-~-------~L---------r~G~~~L~lW~~~~ 124 (158)
T cd08398 105 DYT-D-------TL---------VSGKMALNLWPVPH 124 (158)
T ss_pred CCC-C-------hh---------hCCCEEEEEEcCCc
Confidence 533 1 12 35788888876554
No 185
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.42 E-value=1.1 Score=43.26 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=47.7
Q ss_pred CCcEEEEEE--CC---eeeeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC---CceeEEEecccccc
Q 004774 80 SDPYVTVVV--PQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (731)
Q Consensus 80 ~d~yv~v~l--~~---~~~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~---~~~iG~~~i~l~~~ 147 (731)
.+.||++.+ ++ .....|.....+.++.|||...|++.-. ++.|.|+||+.+... +..||.+.++|.+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567888766 33 2223444444457899999999985543 466899999876543 57899999988764
Q ss_pred c
Q 004774 148 A 148 (731)
Q Consensus 148 ~ 148 (731)
.
T Consensus 108 ~ 108 (156)
T cd08380 108 K 108 (156)
T ss_pred c
Confidence 3
No 186
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.33 E-value=0.4 Score=50.19 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=79.0
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
+.-..|.|.+.++++|+|+.... -+|- +.+.||.++.+.+
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~---------------------------~kgl-------------t~~~ycVle~drq 85 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQ---------------------------QKGL-------------TVCFYCVLEPDRQ 85 (442)
T ss_pred eecccceEEEEEecccccccChh---------------------------ccCc-------------eeeeeeeeeeccc
Confidence 33467889999999999974221 1111 3889999999998
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~ 170 (731)
...+|+|......-.|.|+|.+.+.+. +.+.+-|+.++... +.+.-...+.+..+. ....++.+.|. .++.
T Consensus 86 h~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RHKLC~~g~l~~~~v~-rqspd~~~Al~------lePr 157 (442)
T KOG1452|consen 86 HPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQRRHKLCHLGLLEAFVVD-RQSPDRVVALY------LEPR 157 (442)
T ss_pred CccccccccCCCCccchhhceeecccc-eeeeEEEeecCchhhccccccchhhhhhhh-hcCCcceeeee------cccC
Confidence 888999888888889999999987653 34566666665543 433222233333333 22233445442 1357
Q ss_pred ceEEEEEEEee
Q 004774 171 ASIQLELKFTP 181 (731)
Q Consensus 171 g~L~lsl~y~p 181 (731)
|++.+.|.+..
T Consensus 158 gq~~~r~~~~D 168 (442)
T KOG1452|consen 158 GQPPLRLPLAD 168 (442)
T ss_pred CCCceecccCC
Confidence 88888887665
No 187
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=90.20 E-value=2.9 Score=40.16 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=67.1
Q ss_pred EEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCC--------------CeEEEEEEEcCCCC-CceeEEEecccccc
Q 004774 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (731)
Q Consensus 83 yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~--------------~~l~~~v~d~~~~~-~~~iG~~~i~l~~~ 147 (731)
.+-+.+.+++ ++|+.+..+.+|.|+|.|.|++.... ..|.+.|-..|..+ ..++|...+.-..+
T Consensus 37 ~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 37 TLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred EEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence 3344445666 89999999999999999999987752 34667776666665 58888888877666
Q ss_pred cCCcee--EEEEEccCCCCCCCCCCceEEEEEEEeecC
Q 004774 148 ATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (731)
Q Consensus 148 ~~~~~~--~~w~~l~~~~~~~~~~~g~L~lsl~y~p~~ 183 (731)
...... ..-..|.........+.|-|.+++...|..
T Consensus 116 L~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 116 LCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 533332 223334322222123689999999988854
No 188
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.84 E-value=2.1 Score=37.09 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=62.0
Q ss_pred CcCCCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEE
Q 004774 77 IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW 156 (731)
Q Consensus 77 ~~~~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w 156 (731)
++..+..+.+.+++..+++|.-... .+..|+++|.|.+.. +.+|+|.|+-+|. ..+.|-..+.|.+... ..-
T Consensus 6 ~~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~----~~~ 77 (98)
T cd08687 6 MGCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQ 77 (98)
T ss_pred ecccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhcc----cce
Confidence 3447788899999988888876554 578899999999876 4589999987755 3456666777776321 112
Q ss_pred EEccCCCCCCCCCCceEEEEEEE
Q 004774 157 YDIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 157 ~~l~~~~~~~~~~~g~L~lsl~y 179 (731)
.+| .+.|.+...++|
T Consensus 78 ~~l--------epqg~l~~ev~f 92 (98)
T cd08687 78 LDM--------EPQLCLVAELTF 92 (98)
T ss_pred ecc--------ccccEEEEEEEe
Confidence 233 457888888887
No 189
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=88.22 E-value=0.54 Score=54.08 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCC
Q 004774 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (731)
Q Consensus 606 ~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~ 685 (731)
.|+++|..| |..|-+|.+|+-.++-=| +.. =++|+ +.|-++||. .+|+.. +-
T Consensus 385 pIV~ALi~A--A~nGKqVtvlVELkARFD-EE~----NI~WA------------k~LE~AGvh-------VvyG~~--gl 436 (696)
T COG0855 385 PIVRALIDA--AENGKQVTVLVELKARFD-EEA----NIHWA------------KRLERAGVH-------VVYGVV--GL 436 (696)
T ss_pred HHHHHHHHH--HHcCCeEEEEEEEhhhcC-hhh----hhHHH------------HHHHhCCcE-------EEeccc--ce
Confidence 789999999 667888888887765211 011 12343 468899994 577663 23
Q ss_pred CCCCccccC----CC---ceeeeccccccccccccccceeEEEecccccCC
Q 004774 686 APKDVLANN----GD---KMLGISFSNFFMRIEGSQKCCHIHIFANSFLGP 729 (731)
Q Consensus 686 ~lHaK~~iv----Dd---~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~~ 729 (731)
..|||+++| || +|+-+||-|.++.+..+=|.++++-.+++++.+
T Consensus 437 KtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriYTD~sl~Tad~~i~~D 487 (696)
T COG0855 437 KTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLYTDLSLLTADPEIGAD 487 (696)
T ss_pred eeeeeEEEEEEecCCcEEEEEEecCCCCCccceeeeeechhccCCHHHHHH
Confidence 489999998 33 588999999999999999999999888877643
No 190
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.65 E-value=2.9 Score=39.53 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=47.0
Q ss_pred CcEEEEEE--CC---e-eeeeeccccCC-CCCeEeeEEEEeecC----CCCeEEEEEEEcCCCC-C----ceeEEEeccc
Q 004774 81 DPYVTVVV--PQ---A-TVARTRVLKNS-QEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (731)
Q Consensus 81 d~yv~v~l--~~---~-~~~~T~v~~~~-~~P~wne~f~~~~~~----~~~~l~~~v~d~~~~~-~----~~iG~~~i~l 144 (731)
+.||++.+ ++ . .+..|+...-+ ..+.|||...|++.- .++.|.|+|+..+... . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45677766 44 2 33366666666 899999999998654 2567899999887765 3 6899999988
Q ss_pred cccc
Q 004774 145 HTIA 148 (731)
Q Consensus 145 ~~~~ 148 (731)
.+..
T Consensus 83 Fd~~ 86 (142)
T PF00792_consen 83 FDYR 86 (142)
T ss_dssp B-TT
T ss_pred ECCC
Confidence 7663
No 191
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=86.85 E-value=4.1 Score=43.51 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=65.0
Q ss_pred HHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC-CCCCChhHHHHHHHHH
Q 004774 570 IRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE-GDPKTNTVQEILFWQS 648 (731)
Q Consensus 570 I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~-g~~~~~~v~~~~~~~~ 648 (731)
+..| ..+-|.+=|..+.. .+-...|.+ +....+|.|++-+.+- |-+ . +++
T Consensus 5 ~~~a-d~l~IasGYvS~~~----------------l~~L~~l~e---~~~~~~I~LivGM~~~eGis----~-----~~~ 55 (296)
T PF09565_consen 5 IKEA-DELRIASGYVSNDA----------------LEELKKLVE---EYHILKIKLIVGMYYYEGIS----I-----PQH 55 (296)
T ss_pred cCCC-CeEEEEEecCCHHH----------------HHHHHHHHh---hCCCcceEEEEeccccCCcC----H-----HHH
Confidence 3344 56778888887542 122234433 3456788888887763 421 1 122
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccC----CCceeeeccccccc--cccccccceeEEEe
Q 004774 649 QTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANN----GDKMLGISFSNFFM--RIEGSQKCCHIHIF 722 (731)
Q Consensus 649 ~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~iv----Dd~~~~vGS~Nld~--RS~~~n~E~~~~i~ 722 (731)
-++..+-..+.+.+.. .+|-. +....|+|+.+. -+.-++||||||.. =+..-++|..+..+
T Consensus 56 ----~~~~~L~~~~~~~~~g-------~vYv~--~~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~~~~~E~~v~~D 122 (296)
T PF09565_consen 56 ----NALCKLNDFLQENGIG-------EVYVV--PDPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFTRRQYEAMVTCD 122 (296)
T ss_pred ----HHHHHHHHHhhhcCCc-------eEEEe--CCCCcccEEEEEecCCCceEEEEeeccccccccccccceeEEEecC
Confidence 2233333345555552 12211 346799999998 34578999999999 44557899555444
No 192
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=86.61 E-value=2.6 Score=40.88 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=50.5
Q ss_pred CCCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccc
Q 004774 79 TSDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (731)
Q Consensus 79 ~~d~yv~v~l--~~~~---~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~ 147 (731)
.+|.||++.+ ++.. .-.|..+.-+..+.|||-..|++.-. ++.|.|+||+.+..+ ...+|.++++|.+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4889999977 3322 12555555577899999999986653 466899999987654 67899999988754
No 193
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=86.23 E-value=4.6 Score=39.58 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCcEEEEEE--CCeee---eeecccc--C--CCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC----------Cce
Q 004774 80 SDPYVTVVV--PQATV---ARTRVLK--N--SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------AQI 136 (731)
Q Consensus 80 ~d~yv~v~l--~~~~~---~~T~v~~--~--~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~----------~~~ 136 (731)
.|.|+++.+ ++... ..|+... + ...+.|||...|++.-. ++.|.|++|+..... +..
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 678888876 43221 2343221 1 34678999999986542 456889999865432 467
Q ss_pred eEEEecccccc
Q 004774 137 IGTAAIPAHTI 147 (731)
Q Consensus 137 iG~~~i~l~~~ 147 (731)
+|.+.++|.+.
T Consensus 109 lG~~~~~LFd~ 119 (171)
T cd04012 109 LGWVSLPLFDF 119 (171)
T ss_pred EEEEeEeeEcc
Confidence 88888887654
No 194
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=86.22 E-value=1.2 Score=45.87 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecC
Q 004774 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (731)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~ 629 (731)
...|.+....+|++|++.|||..+.= . ...+...|.+| .+|||+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~---~---------------l~~l~~~L~~a--~~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPE---F---------------LEELRDELEEA--VDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GG---G---------------HHHHHHHHHHH--HHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHH---H---------------HHHHHHHHHHH--HHCCCEEEEEEeC
Confidence 47799999999999999999997631 1 13677888888 6699999999997
No 195
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=82.79 E-value=2.7 Score=49.94 Aligned_cols=118 Identities=19% Similarity=0.332 Sum_probs=75.4
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--- 90 (731)
+..|.+++.+++|..|.. +...||+..+..
T Consensus 756 l~ygflh~~vhsat~lkq-----------------------------------------------s~~lY~Td~v~e~~~ 788 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ-----------------------------------------------SRNLYCTDEVDEFGY 788 (1112)
T ss_pred ccccceeeeecccccccc-----------------------------------------------ccceeeehhhhhhcc
Confidence 467899999999998874 156888888753
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEc----------CCCC-CceeEEEecccccccCCceeEEEEE
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD----------DVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~----------~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~ 158 (731)
...++|+++.+|..|.||++|.+++-...+ ..+..+++ +... +...|+..+.+...... ...|+.
T Consensus 789 ~~s~~st~~iadT~~~~~npe~hv~~~~sqS-~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t 865 (1112)
T KOG4269|consen 789 FVSKASTRVIADTAEPQWNPEKHVPVIESQS-SRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYT 865 (1112)
T ss_pred ccccccceeeecccCCCCChhcccchhhccc-cchhhhcccchHHHhhhccchhhcccccccccccCccccc--cccCcc
Confidence 556899999999999999999999765421 11222221 1112 45666666665433311 224554
Q ss_pred ccCCCCCCCCCCceEEEEEEEeecCCCC
Q 004774 159 IIAPSGSPPKPGASIQLELKFTPCDKNP 186 (731)
Q Consensus 159 l~~~~~~~~~~~g~L~lsl~y~p~~~~p 186 (731)
-... .....+..+|.|.+.....
T Consensus 866 ~v~~-----~n~~~ve~~v~~ssss~Ss 888 (1112)
T KOG4269|consen 866 QVID-----MNGIVVETSVKFSSSSTSS 888 (1112)
T ss_pred Chhh-----hcCcceeeeEEeccccccc
Confidence 3222 2345678888888865443
No 196
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.57 E-value=11 Score=33.95 Aligned_cols=94 Identities=12% Similarity=0.169 Sum_probs=52.4
Q ss_pred EEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCC--------CCeEEEEEEEcCCCCCceeEEEecccccccC--Cce
Q 004774 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL 152 (731)
Q Consensus 83 yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~--------~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~--~~~ 152 (731)
||++..-.-..+.|.++. ..+|.+|-+-.+.+... ...+.++++..-......+|.+.+++.++.. ++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 555555444446777776 88999998888887775 3568899987653336899999999999873 334
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEe
Q 004774 153 ISRWYDIIAPSGSPPKPGASIQLELKFT 180 (731)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~L~lsl~y~ 180 (731)
...-..|.+..++ .-|.|...++..
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEec
Confidence 6667777666554 678988887753
No 197
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.55 E-value=9 Score=38.13 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=32.3
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~ 130 (731)
...++|.|.....+|.|||++-+.++.. ...|.|+++...
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 3446899999999999999999999885 466888777654
No 198
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.79 E-value=12 Score=37.49 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=39.5
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-----CceeEEEeccc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-----AQIIGTAAIPA 144 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-----~~~iG~~~i~l 144 (731)
...++|.|.....+|.|+|++-+.++.. ...|.|+++...... ...+|-+.+||
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 3457888989999999999999998875 467889887754321 23456666665
No 199
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=77.10 E-value=8.4 Score=38.11 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=32.0
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC----CceeEEEeccccc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~----~~~iG~~~i~l~~ 146 (731)
..+.|.|...+.+|.|+|+|.++++... ..|.|++++...-. +..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4468888888999999999999998863 56889988865432 1566766666654
No 200
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=72.79 E-value=30 Score=34.19 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=50.9
Q ss_pred cEEEEEE--CCee--eeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC--CceeEEEecccccccCCc
Q 004774 82 PYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGE 151 (731)
Q Consensus 82 ~yv~v~l--~~~~--~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~--~~~iG~~~i~l~~~~~~~ 151 (731)
-||++.| ++.. ..+|....-+.+|.|||-..|++.-. .+.|.|+||+..... ....|.- +...-....
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~ 109 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKH 109 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--ccccccccc
Confidence 5666654 3311 12455555577899999988886553 466889999863221 1112211 111111111
Q ss_pred eeEEEE--EccCCCCCCCCCCceEEEEEEEeecC
Q 004774 152 LISRWY--DIIAPSGSPPKPGASIQLELKFTPCD 183 (731)
Q Consensus 152 ~~~~w~--~l~~~~~~~~~~~g~L~lsl~y~p~~ 183 (731)
..-.|. .|++.++. -..|+..|.++-.|..
T Consensus 110 ~~l~wvn~~LFD~~~~--Lr~G~~~L~~W~~~~~ 141 (178)
T cd08399 110 QLLYYVNLLLIDHRFL--LRTGEYVLHMWQISGK 141 (178)
T ss_pred ceEEEEEEEEEcCCCc--eecCCEEEEEecCCCc
Confidence 222342 33444332 2468888888876643
No 201
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.98 E-value=4.2 Score=47.47 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=65.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccC-CceeEEEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~-~~~~~~w~ 157 (731)
.+||+.|.+.......+.+.+.+..|.|+|+|.+.+.. ...+.|.|+.+.... +.+...+++...++.. ......|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 79999999987665667778889999999999999544 446777787766554 5555555555555542 22345687
Q ss_pred EccCCCCCCCCCCceEEEEEEEeecCC
Q 004774 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (731)
Q Consensus 158 ~l~~~~~~~~~~~g~L~lsl~y~p~~~ 184 (731)
.+ ++.|++...+.++-...
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 75 23577777777665433
No 202
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=66.57 E-value=2.7 Score=47.71 Aligned_cols=44 Identities=9% Similarity=-0.029 Sum_probs=29.3
Q ss_pred CCCCCCCccccCCC-------ceeeecccccccc-----------ccccccceeEEEecccc
Q 004774 683 REEAPKDVLANNGD-------KMLGISFSNFFMR-----------IEGSQKCCHIHIFANSF 726 (731)
Q Consensus 683 ~~~~lHaK~~ivDd-------~~~~vGS~Nld~R-----------S~~~n~E~~~~i~~~~~ 726 (731)
...+.|+|+++... .|+++||+||..= ..--|||++|++.-..+
T Consensus 345 ~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG~~~~~~~~l~i~nyElGVl~~P~~~ 406 (443)
T PF06087_consen 345 SRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWGKRSKNGSQLSIRNYELGVLFLPSSF 406 (443)
T ss_dssp TTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH-EEETTTTCCEESSBEEEEEEEGGGC
T ss_pred CCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhcccccCCceeeecceEEEEEEecCcc
Confidence 44679999999876 5999999999744 34459999999944433
No 203
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=61.10 E-value=52 Score=29.04 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEc
Q 004774 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (731)
Q Consensus 80 ~d~yv~v~l--~~~~~---~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~ 129 (731)
++.||++.+ ++... -.|..+.-+..+.|||-..|++.-. ...|.|++|+.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478888876 33221 2454444466699999988885543 45688999874
No 204
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=57.70 E-value=13 Score=41.55 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=37.9
Q ss_pred eeEEEeccccc-ccCCceeEEEEEccCCCCCCCCCCceEEEEEEEeecCCCCc
Q 004774 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (731)
Q Consensus 136 ~iG~~~i~l~~-~~~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~~~~p~ 187 (731)
++|.+.||++. +..+...+.||++.+...+. ...|.+ ++++|......|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp~ 51 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLPS 51 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceeccH
Confidence 48999999999 66777889999998765544 345677 7888887655543
No 205
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=48.99 E-value=35 Score=33.51 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=33.4
Q ss_pred eccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC------CceeEEEecccc
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG------AQIIGTAAIPAH 145 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~------~~~iG~~~i~l~ 145 (731)
|.++....+|.|+|+|-+.++.. ...|.|++++...-. ...+|-+.+||-
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 34444448999999999999764 456889998765322 345555555554
No 206
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.40 E-value=1e+02 Score=30.68 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=32.7
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~ 130 (731)
...+.|.|...+.+|.|+|++-+.++.. ...|.|+.++.+
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 3457888999999999999999998875 356888888754
No 207
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=46.33 E-value=33 Score=30.45 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=39.9
Q ss_pred eEcCCCCccCC--cchHHHHHHHHHhc----ccEEEE----EEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCC
Q 004774 230 IPLDGGKLYKP--GTCWEDICHAISEA----HHLIYI----VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGV 299 (731)
Q Consensus 230 ~~l~~g~~y~~--~~~f~~l~~aI~~A----k~sI~i----~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGV 299 (731)
++-..|++|.+ .++|.-+++.+++- ...|.+ .|+ +. .. ...-..|.++|.+++++|.
T Consensus 11 ~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~Yf--NT-------SS----sk~l~~i~~~Le~~~~~g~ 77 (99)
T PF09345_consen 11 RLEISGESYPENAFAFYQPILDWLEAYLAEPNKPITFNFKLSYF--NT-------SS----SKALMDIFDLLEDAAQKGG 77 (99)
T ss_pred EEEEecccCccCHHHHHHHHHHHHHHHHhCCCCcEEEEEEEEEE--ec-------Hh----HHHHHHHHHHHHHHHhcCC
Confidence 44467788876 45788888777763 233333 333 11 10 0012467788888999999
Q ss_pred EEEEEEeC
Q 004774 300 RVLLLVWD 307 (731)
Q Consensus 300 kVriLv~D 307 (731)
+|.|- |-
T Consensus 78 ~V~v~-Wy 84 (99)
T PF09345_consen 78 KVTVN-WY 84 (99)
T ss_pred cEEEE-EE
Confidence 99998 63
No 208
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=44.55 E-value=48 Score=32.77 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.0
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD 130 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~ 130 (731)
..+.|.|...+.+|.|+|++-++++.. ...|.|+.++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 456888999999999999999998875 356888888754
No 209
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=43.89 E-value=27 Score=40.07 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=58.1
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCC----C-CceeEEEecccccccCCceeEEEEEccCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF----G-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~----~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (731)
..+.+|.++.+..||.|-+.|.+....+. +.+++++++.+.. . .+|+|++...+.++........-+-+ ..+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~--~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL--KPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc--ccC
Confidence 34569999999999999999998866654 5679999987654 2 68999999988887643222211212 222
Q ss_pred CCCCCCceEEEEEE
Q 004774 165 SPPKPGASIQLELK 178 (731)
Q Consensus 165 ~~~~~~g~L~lsl~ 178 (731)
++ ...|+|.+++.
T Consensus 118 ~~-~~~g~iti~ae 130 (529)
T KOG1327|consen 118 KN-AGSGTITISAE 130 (529)
T ss_pred cc-CCcccEEEEee
Confidence 22 34667666655
No 210
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=43.02 E-value=1.5e+02 Score=34.52 Aligned_cols=93 Identities=16% Similarity=0.392 Sum_probs=61.3
Q ss_pred cEEEEEECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCC--C--CCceeEEEecccccccCCceeEEEE
Q 004774 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV--F--GAQIIGTAAIPAHTIATGELISRWY 157 (731)
Q Consensus 82 ~yv~v~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~--~--~~~~iG~~~i~l~~~~~~~~~~~w~ 157 (731)
.||+..+.+.+. +|. +.....|.|...=.|...++...+++.++.... + .|..+|++-+.- -.......+|+
T Consensus 362 vyctmevegekl-qtd-qaeaskp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~p--tpns~ks~ewh 437 (1218)
T KOG3543|consen 362 VYCTMEVEGEKL-QTD-QAEASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQP--TPNSAKSPEWH 437 (1218)
T ss_pred EEEEEEeccccc-ccc-hhhhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEec--CCCCcCCccce
Confidence 899999998664 443 334668999988888888888788888887643 2 378889876532 23333456799
Q ss_pred EccCCCCCCCCCCceEEEEEEE
Q 004774 158 DIIAPSGSPPKPGASIQLELKF 179 (731)
Q Consensus 158 ~l~~~~~~~~~~~g~L~lsl~y 179 (731)
.+.-+...+ ...-.|.+.++.
T Consensus 438 ~mtvpknsq-dqdlkiklavrm 458 (1218)
T KOG3543|consen 438 TMTVPKNSQ-DQDLKIKLAVRM 458 (1218)
T ss_pred eeecCCCCc-CccceEEEEEec
Confidence 886554433 334455555543
No 211
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=41.26 E-value=2.7e+02 Score=30.30 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCcEEEEEECCeeeeeeccccCCCCC--eEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEeccccc--ccCCceeEE
Q 004774 80 SDPYVTVVVPQATVARTRVLKNSQEP--VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT--IATGELISR 155 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~~~~~P--~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~--~~~~~~~~~ 155 (731)
...|++++.+.... +|..+..+..- .-.|...+.+..-...|++.|+.....+...||.+.+.++. +...-+..+
T Consensus 74 khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 56889988887553 45333322222 34577777788888899999999988889999999998754 223345668
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEee
Q 004774 156 WYDIIAPSGSPPKPGASIQLELKFTP 181 (731)
Q Consensus 156 w~~l~~~~~~~~~~~g~L~lsl~y~p 181 (731)
||.+ ...|+ ..+.|.||+.=+.
T Consensus 153 Wy~c-~kDGq---~~cRIqLSFhKL~ 174 (508)
T PTZ00447 153 WFVC-FKDGQ---EICKVQMSFYKIQ 174 (508)
T ss_pred eEEE-ecCCc---eeeeEEEEehhhh
Confidence 9999 45553 4677777765333
No 212
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=40.51 E-value=49 Score=36.46 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 004774 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (731)
Q Consensus 561 sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~ 631 (731)
..++.+...|.+||++|+|.+-|.--.+ .+++.-|..|+.....++|-|++-..-
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~E----------------~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKLE----------------RELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchhH----------------HHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 4788999999999999999999986543 489999999999999999999987654
No 213
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=30.38 E-value=3.6e+02 Score=30.23 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=57.8
Q ss_pred CCCcEEEEEECCeeeeeeccccC---CCCC-eEe---eEEEEeec------CC------CCeEEEEEEEcCC-------C
Q 004774 79 TSDPYVTVVVPQATVARTRVLKN---SQEP-VWN---EHFNIPLA------HP------LSNLEIQVKDDDV-------F 132 (731)
Q Consensus 79 ~~d~yv~v~l~~~~~~~T~v~~~---~~~P-~wn---e~f~~~~~------~~------~~~l~~~v~d~~~-------~ 132 (731)
++.+||+|+|.+-..+.+.+-.- +.+| .-+ ..|.+.-. .+ ...|+|.||.-.. .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 46789999998754433332211 1111 111 23444311 11 1458999997332 2
Q ss_pred CCceeEEEeccccccc-CCc---eeEEEEEccCCCCC--CCCCCceEEEEEEEeec
Q 004774 133 GAQIIGTAAIPAHTIA-TGE---LISRWYDIIAPSGS--PPKPGASIQLELKFTPC 182 (731)
Q Consensus 133 ~~~~iG~~~i~l~~~~-~~~---~~~~w~~l~~~~~~--~~~~~g~L~lsl~y~p~ 182 (731)
+..+||++.|+|+--- .+. ....|..| .+... ......+|+|.++-.|.
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~i-Gk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISI-GKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceec-CCCCCCCCCCCcceEEEEEeccCC
Confidence 3689999999997221 111 35679999 33221 12256889999986663
No 214
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=24.24 E-value=1.3e+02 Score=31.44 Aligned_cols=48 Identities=40% Similarity=0.310 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEE
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv 305 (731)
+..-..+.+.|+.|+++|.+... .++ ...+.+.|.++.+|||.|.+++
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~---~e~--------------~~~l~~~l~~~~~rgv~v~i~~ 166 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLP---YEI--------------FKELKEPLIRALKRGVRVLILV 166 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeC---HHH--------------HHHhHHHHHHHHHccCeEEEEe
Confidence 46788899999999999999865 111 2679999999999999999998
No 215
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=22.48 E-value=2.2e+02 Score=25.65 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=39.4
Q ss_pred CeEEEEEEEcCC---CC-CceeEEEeccccccc--------------CCceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 004774 120 SNLEIQVKDDDV---FG-AQIIGTAAIPAHTIA--------------TGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (731)
Q Consensus 120 ~~l~~~v~d~~~---~~-~~~iG~~~i~l~~~~--------------~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~ 180 (731)
..|.+.++.-.. .. ..+||.+.+++.+.. .......-|+|.++.+. ..|+|.+.++..
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~---~~G~I~l~iRLs 104 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGN---PVGEISLYIRLS 104 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCc---eeeeEEEEEEEe
Confidence 456666665432 23 679999999997654 22245668999887764 478988877754
No 216
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=21.47 E-value=2.5e+02 Score=29.01 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=18.9
Q ss_pred CcHHHHHHHHhhcCCEEEEEE
Q 004774 285 LTLGELLKYKSEEGVRVLLLV 305 (731)
Q Consensus 285 ~~l~~~L~~aA~rGVkVriLv 305 (731)
..+.++|.+|.+.||+|.-+-
T Consensus 193 p~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 193 EEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 689999999999999998764
No 217
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=20.90 E-value=5.6e+02 Score=24.55 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=64.8
Q ss_pred HHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHH
Q 004774 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEIL 644 (731)
Q Consensus 565 ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~ 644 (731)
.+-.-+..--..|.||.||---.-. +.|++ +..+.++.. ..+-+.|.++|-.-+. .+.-
T Consensus 10 LFg~Yl~d~~~~I~ieDPYir~~hQ---------i~Nl~--~F~El~vk~--~~~~~~i~LvT~~d~~----~~~~---- 68 (148)
T cd02685 10 LFGPYLDDGVTEITVEDPYIRNFHQ---------IRNFL--RFCELVVKP--PCELKYIHLVTGEDED----NGKQ---- 68 (148)
T ss_pred HHHHHHhCCceEEEEeCccccchHH---------HHHHH--HHHHHHhcC--ccceEEEEEEecCCCC----CHHH----
Confidence 3334445233599999999865421 22332 333333332 3456677777764221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceee-----------------ecccccc
Q 004774 645 FWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLG-----------------ISFSNFF 707 (731)
Q Consensus 645 ~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~-----------------vGS~Nld 707 (731)
|. .....+.+.|.+.||. +. +.. +..+|+.-++.|.-|.+ +|..|++
T Consensus 69 --Q~----~~l~~i~~sl~~~gI~------~~-~~f---~~tiHDR~I~~~nGw~IkigRGLD~fq~~~~~fsig~~d~~ 132 (148)
T cd02685 69 --QI----EALEEIKQSLASHGVE------FT-WEF---SDTIHDREIRTDNGWIIKIGRGLDYFKPPEGKFSLGNRDQD 132 (148)
T ss_pred --HH----HHHHHHHHHHHhCCcE------EE-EEE---CCCccceEEEecCCeEEEECCcccceeCCCCccchhhcchh
Confidence 12 2234667788888985 11 111 24688888888876654 7888888
Q ss_pred ccccccccceeE
Q 004774 708 MRIEGSQKCCHI 719 (731)
Q Consensus 708 ~RS~~~n~E~~~ 719 (731)
.|.-.- |++.+
T Consensus 133 ~R~C~~-t~Vdi 143 (148)
T cd02685 133 FRPCKA-TEVDI 143 (148)
T ss_pred ccceee-eEEEE
Confidence 886542 44443
No 218
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=20.71 E-value=3.2e+02 Score=28.18 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHhhcCCEEEEEE
Q 004774 284 DLTLGELLKYKSEEGVRVLLLV 305 (731)
Q Consensus 284 ~~~l~~~L~~aA~rGVkVriLv 305 (731)
...+.++|.+|.++||+|+..-
T Consensus 191 Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 191 DPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred CHHHHHHHHHHHHcCCEEEEEE
Confidence 3689999999999999987764
Done!