Query 004774
Match_columns 731
No_of_seqs 392 out of 2750
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsi_A Phosphatidylserine synt 100.0 5.4E-43 1.9E-47 391.5 16.3 360 208-728 23-406 (458)
2 1v0w_A Phospholipase D; hydrol 100.0 1.5E-41 5E-46 387.3 16.7 374 241-728 65-477 (506)
3 1xdp_A Polyphosphate kinase; P 99.9 6.4E-28 2.2E-32 279.2 12.6 271 242-728 347-634 (687)
4 2o8r_A Polyphosphate kinase; s 99.9 4.7E-27 1.6E-31 269.8 15.0 268 241-728 351-640 (705)
5 2fk9_A Protein kinase C, ETA t 99.8 6.2E-19 2.1E-23 168.8 12.8 130 10-180 22-156 (157)
6 2dmh_A Myoferlin; beta-sandwic 99.8 4.2E-18 1.4E-22 159.9 16.2 124 15-184 5-136 (140)
7 4ggj_A Mitochondrial cardiolip 99.8 6.2E-19 2.1E-23 175.5 10.1 135 241-461 45-179 (196)
8 2ep6_A MCTP2 protein; beta san 99.8 4.5E-18 1.5E-22 158.4 14.7 129 7-181 3-132 (133)
9 3b7y_A E3 ubiquitin-protein li 99.8 4.7E-18 1.6E-22 162.1 14.9 124 15-181 18-153 (153)
10 1wfj_A Putative elicitor-respo 99.8 3.2E-18 1.1E-22 159.9 12.9 125 14-185 7-134 (136)
11 3kwu_A MUNC13-1; calcium bindi 99.8 2.5E-17 8.6E-22 156.1 18.7 124 12-181 12-147 (148)
12 1gmi_A Protein kinase C, epsil 99.8 6.6E-18 2.3E-22 157.9 14.2 129 14-182 3-134 (136)
13 3m7f_B E3 ubiquitin-protein li 99.7 2.4E-17 8.1E-22 161.2 15.7 124 16-182 7-142 (176)
14 1rlw_A Phospholipase A2, CALB 99.7 5.5E-17 1.9E-21 149.2 13.3 118 16-181 2-125 (126)
15 1byr_A Protein (endonuclease); 99.7 2.9E-17 1E-21 156.7 11.5 122 560-728 13-135 (155)
16 3pyc_A E3 ubiquitin-protein li 99.7 2.7E-16 9.2E-21 146.0 15.7 120 17-179 5-131 (132)
17 2nq3_A Itchy homolog E3 ubiqui 99.7 1.9E-16 6.5E-21 154.4 13.9 127 13-184 32-164 (173)
18 1byr_A Protein (endonuclease); 99.7 4.1E-16 1.4E-20 148.7 12.6 135 241-460 13-149 (155)
19 2b3r_A Phosphatidylinositol-4- 99.7 1.1E-15 3.8E-20 142.5 14.6 109 9-160 12-129 (134)
20 4gel_A Mitochondrial cardiolip 99.6 1.2E-16 4.2E-21 161.8 7.0 152 241-462 57-212 (220)
21 4ggj_A Mitochondrial cardiolip 99.6 1.5E-16 5.2E-21 158.2 6.8 119 561-728 46-164 (196)
22 1rsy_A Synaptotagmin I; calciu 99.6 1.6E-15 5.5E-20 144.5 13.1 104 15-160 40-149 (152)
23 1a25_A CALB, protein kinase C 99.6 1.9E-15 6.5E-20 143.4 13.4 107 12-161 26-139 (149)
24 2r83_A Synaptotagmin-1; C2A-C2 99.6 4.8E-15 1.6E-19 155.7 17.4 126 15-182 17-148 (284)
25 3rdl_A Protein kinase C alpha 99.6 2.1E-15 7.3E-20 140.6 13.0 108 12-162 11-125 (137)
26 1rh8_A Piccolo protein; beta-s 99.6 7.2E-16 2.5E-20 144.9 9.7 108 12-161 13-138 (142)
27 2q3x_A Regulating synaptic mem 99.6 2E-15 6.9E-20 146.8 13.1 109 12-162 25-140 (171)
28 3fdw_A Synaptotagmin-like prot 99.6 1.5E-15 5.1E-20 143.9 11.8 105 16-162 22-135 (148)
29 3f04_A Synaptotagmin-1; C2A, c 99.6 1.8E-15 6E-20 142.5 12.1 104 15-160 32-141 (143)
30 2z0u_A WW domain-containing pr 99.6 8.6E-16 2.9E-20 147.0 8.7 104 15-160 41-154 (155)
31 2d8k_A Synaptotagmin VII; exoc 99.6 3.7E-15 1.3E-19 140.0 12.6 104 15-160 24-134 (141)
32 2bwq_A Regulating synaptic mem 99.6 4.8E-15 1.7E-19 136.7 12.5 102 15-159 16-128 (129)
33 3fbk_A RGS3, RGP3, regulator o 99.6 9.8E-15 3.4E-19 139.2 13.5 108 12-162 22-138 (153)
34 1v27_A Regulating synaptic mem 99.6 5.3E-15 1.8E-19 138.6 11.3 105 16-163 20-135 (141)
35 2chd_A Rabphilin-3A, exophilin 99.6 7.6E-15 2.6E-19 137.9 12.1 104 15-160 27-139 (142)
36 1wfm_A Synaptotagmin XIII; C2 99.6 9.5E-15 3.3E-19 136.8 12.3 102 15-161 24-132 (138)
37 2dmg_A KIAA1228 protein; beta- 99.6 1.6E-14 5.6E-19 135.6 12.3 104 16-162 23-136 (142)
38 1ugk_A Synaptotagmin IV, KIAA1 99.6 2.3E-14 8E-19 133.9 13.3 104 15-160 20-132 (138)
39 3n5a_A Synaptotagmin-7; calciu 99.5 1.9E-14 6.6E-19 134.1 11.8 104 15-162 14-125 (138)
40 1tjx_A Similar to synaptotagmi 99.5 2.7E-14 9.3E-19 136.9 12.5 104 15-160 23-146 (159)
41 2enp_A B/K protein; C2 type 1, 99.5 7.5E-15 2.6E-19 138.9 8.4 113 15-164 24-143 (147)
42 1w15_A Synaptotagmin IV; metal 99.5 5.7E-15 1.9E-19 140.7 7.5 103 15-161 28-138 (153)
43 2cm5_A Rabphilin-3A; protein t 99.5 4.5E-14 1.5E-18 136.4 13.6 91 15-147 35-133 (166)
44 3l9b_A Otoferlin; C2-domain, b 99.5 1.3E-13 4.5E-18 127.3 12.8 101 80-183 37-142 (144)
45 1dqv_A Synaptotagmin III; beta 99.5 1.3E-13 4.4E-18 146.0 14.6 125 15-182 18-150 (296)
46 2cjt_A UNC-13 homolog A, MUNC1 99.5 1.9E-13 6.5E-18 126.9 11.6 96 80-179 23-130 (131)
47 1xdp_A Polyphosphate kinase; P 99.4 5.2E-14 1.8E-18 163.1 4.9 118 564-728 350-481 (687)
48 4gel_A Mitochondrial cardiolip 99.4 2.3E-13 7.9E-18 137.6 7.8 120 560-728 57-196 (220)
49 3jzy_A Intersectin 2; C2 domai 99.4 1.3E-12 4.6E-17 148.5 14.6 117 15-180 385-507 (510)
50 2cjs_A UNC-13 homolog A, MUNC1 99.4 3.6E-12 1.2E-16 123.2 14.2 67 80-149 32-99 (167)
51 3nsj_A Perforin-1; pore formin 99.4 2.4E-12 8.2E-17 146.0 15.0 107 16-179 393-502 (540)
52 1djx_A PLC-D1, phosphoinositid 99.4 2.2E-12 7.5E-17 149.4 14.6 120 15-180 495-623 (624)
53 3bxj_A RAS GTPase-activating p 99.4 8.8E-14 3E-18 157.0 1.5 128 13-187 7-163 (483)
54 2r83_A Synaptotagmin-1; C2A-C2 99.3 8.2E-12 2.8E-16 131.0 13.0 103 16-160 149-271 (284)
55 1cjy_A CPLA2, protein (cytosol 99.3 5.4E-12 1.8E-16 147.4 12.0 103 15-159 16-124 (749)
56 1dqv_A Synaptotagmin III; beta 99.2 3.2E-12 1.1E-16 135.2 5.5 104 16-162 151-262 (296)
57 3hsi_A Phosphatidylserine synt 99.0 3E-10 1E-14 126.8 9.1 135 560-725 36-182 (458)
58 3pfq_A PKC-B, PKC-beta, protei 99.0 8.8E-10 3E-14 129.6 13.3 108 13-163 168-282 (674)
59 3ohm_B 1-phosphatidylinositol- 99.0 2E-09 6.8E-14 127.8 12.3 96 80-182 742-846 (885)
60 3qr0_A Phospholipase C-beta (P 98.9 2.8E-09 9.5E-14 125.9 13.2 114 15-181 648-771 (816)
61 2zkm_X 1-phosphatidylinositol- 98.9 3.2E-09 1.1E-13 125.9 12.6 113 15-180 676-798 (799)
62 1yrk_A NPKC-delta, protein kin 98.8 4.4E-08 1.5E-12 87.9 13.8 89 80-180 27-124 (126)
63 1v0w_A Phospholipase D; hydrol 98.8 6.2E-09 2.1E-13 118.2 10.2 132 560-725 65-208 (506)
64 2enj_A NPKC-theta, protein kin 98.8 3.1E-08 1.1E-12 89.9 11.5 91 80-182 32-131 (138)
65 2o8r_A Polyphosphate kinase; s 98.5 1.2E-07 4.2E-12 109.3 9.2 120 563-727 354-487 (705)
66 3qph_A TRMB, A global transcri 97.7 3.9E-06 1.3E-10 90.1 0.1 110 559-726 117-230 (342)
67 3qph_A TRMB, A global transcri 95.7 0.009 3.1E-07 63.8 5.7 51 241-309 118-168 (342)
68 2c1l_A Restriction endonucleas 95.1 0.054 1.8E-06 53.7 8.0 90 606-724 52-144 (358)
69 2f5t_X Archaeal transcriptiona 94.4 0.038 1.3E-06 55.6 5.4 51 241-308 9-59 (233)
70 3l4c_A Dedicator of cytokinesi 82.6 10 0.00035 37.3 11.4 41 91-131 76-119 (220)
71 2f5t_X Archaeal transcriptiona 82.2 1.8 6.3E-05 43.2 6.2 52 559-630 8-59 (233)
72 2yrb_A Protein fantom; beta sa 80.8 14 0.00048 34.2 11.1 100 80-181 40-150 (156)
73 2wxf_A Phosphatidylinositol-4, 74.7 14 0.00047 44.4 11.5 51 80-130 235-294 (940)
74 3hhm_A Phosphatidylinositol-4, 67.8 22 0.00074 43.1 11.1 68 80-148 375-456 (1091)
75 1q32_A TDP1P;, tyrosyl-DNA pho 62.0 3.1 0.00011 46.6 2.3 40 683-722 427-488 (544)
76 1e7u_A Phosphatidylinositol 3- 47.5 76 0.0026 38.1 11.0 50 80-129 238-295 (961)
77 2y3a_A Phosphatidylinositol-4, 45.0 20 0.00069 43.6 5.6 50 80-129 371-429 (1092)
78 1jy1_A TDP1, tyrosyl-DNA phosp 36.0 15 0.00051 40.4 2.3 48 335-400 100-147 (464)
79 3sq7_A Tyrosyl-DNA phosphodies 35.1 21 0.00073 39.2 3.3 43 685-727 352-416 (470)
80 2cs4_A Protein C12ORF2; GTP bi 32.1 90 0.0031 26.3 5.9 76 209-305 5-84 (95)
81 3ehd_A Uncharacterized conserv 24.7 50 0.0017 30.7 3.5 42 572-631 2-44 (162)
82 2c1l_A Restriction endonucleas 24.7 1.9E+02 0.0065 28.8 7.6 80 284-396 50-129 (358)
83 2ymb_A MITD1, MIT domain-conta 23.9 1.1E+02 0.0039 30.5 6.1 107 569-711 118-241 (257)
84 2l82_A Designed protein OR32; 22.4 91 0.0031 26.7 4.3 45 285-343 90-134 (162)
No 1
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=5.4e-43 Score=391.48 Aligned_cols=360 Identities=11% Similarity=0.030 Sum_probs=228.2
Q ss_pred CCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcH
Q 004774 208 LRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTL 287 (731)
Q Consensus 208 ~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l 287 (731)
++.+|.|+++.+| +++|++++++|++|+++|+|++|+|.+ |+ .| ..|
T Consensus 23 ~~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~----~g--~~l 69 (458)
T 3hsi_A 23 ALQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DE----AG--QEI 69 (458)
T ss_dssp ECCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SH----HH--HHH
T ss_pred cccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEec-------Cc----HH--HHH
Confidence 3569999999999 689999999999999999999999864 32 34 799
Q ss_pred HHHHHHHhhc--CCEEEEEEeCC-------CCccCccCccCCCcccCChHHHHhhhcCC--CceEE--ecccCCCCcccc
Q 004774 288 GELLKYKSEE--GVRVLLLVWDD-------KTSHDKLGVKTPGVMATHDEETKKFFKHS--SVNCV--LAPRYASSKLSY 354 (731)
Q Consensus 288 ~~~L~~aA~r--GVkVriLv~D~-------~gs~~~~~~~~~~~~~~~~~~~~~~l~~~--gV~v~--~~~~~p~~~~~~ 354 (731)
.++|.+||+| ||+||||+ |+ +|+.... ....+.+.|..+ +|+|+ +++ +|.+
T Consensus 70 ~~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~~----------~~~~~~~~L~~~g~nv~v~~~~f~-~p~~---- 133 (458)
T 3hsi_A 70 LDEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKSA----------TNADWYCEQRQTYQLPDDPNMFFG-VPIN---- 133 (458)
T ss_dssp HHHHHHHHHHSTTCEEEEEE-ETTGGGSCCC-----C----------CHHHHHHHHHHHHTCTTCCCCEEE-ECSS----
T ss_pred HHHHHHHHhcCCCCEEEEEE-ECcccccccccccccc----------ccHHHHHHHHhhCCCceEeeeecC-Cccc----
Confidence 9999999999 99999996 98 4443210 013444445433 38877 543 2322
Q ss_pred cccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCce
Q 004774 355 FKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH 434 (731)
Q Consensus 355 ~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWh 434 (731)
....+.|+|+|++||||+ + ++||+||+++|+... .+...|+
T Consensus 134 ----~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~dr 174 (458)
T 3hsi_A 134 ----TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDR 174 (458)
T ss_dssp ----SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECC
T ss_pred ----cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcch
Confidence 123567999999999998 8 556699999766431 1124577
Q ss_pred eeeeeEeChHHHHHHHHH--HHHHHhhcccchhhhhhccc-ccccccchhhccccccccCCcccccCCCccccCCCCccc
Q 004774 435 DLHCRLDGPAAYDVLINF--EQRWRKATKLTELTFKFKRV-SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVV 511 (731)
Q Consensus 435 Dv~~~i~Gpav~dl~~~F--~~~Wn~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 511 (731)
| +.+.||.+.|....| ...|+...-.. +....... ..|... .......+.... ...+|.
T Consensus 175 d--~~i~g~~~~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~----~~~~~~~l~~~~------~~~~~~----- 236 (458)
T 3hsi_A 175 Y--QKITHAELADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGN----IRAYRKDLAQNG------EYSLKS----- 236 (458)
T ss_dssp E--EEEECHHHHHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHH----HHHHHHHHHHHC------CCCCSS-----
T ss_pred h--hhhcCchHHHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHH----HHHHHHhhhhcc------cccccc-----
Confidence 7 449999999999999 44575432211 00000000 000000 000000000000 000010
Q ss_pred ccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCC
Q 004774 512 RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW 591 (731)
Q Consensus 512 ~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~ 591 (731)
...+...+|+.... + |.. .+..+..+|+.+|.+|+++|||+||||+|+.
T Consensus 237 -----~~~~~~~~~v~p~~--~-----~~~----------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~--- 285 (458)
T 3hsi_A 237 -----AVKLPNVLSVSPLF--G-----LGA----------------SGNELNQVIEDLFLQVQKKLVICTPYFNFPR--- 285 (458)
T ss_dssp -----CBSSCSSCEEEEEE--E-----ESS----------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH---
T ss_pred -----cCCCCceEEEecCC--C-----CCC----------------chhHHHHHHHHHHHhcccEEEEEEeccCCCH---
Confidence 00011123443311 1 110 1356899999999999999999999999985
Q ss_pred CcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC----CCChhHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Q 004774 592 PSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD----PKTNTVQ-EILFWQSQTMQMMYSVVAQELREMQ 666 (731)
Q Consensus 592 ~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~----~~~~~v~-~~~~~~~~ti~~~~~~~~~~Ll~~G 666 (731)
.+..+|..| +++||+|+||+|+...++ .+.+++. +...+.+..+...+..-++.|+++|
T Consensus 286 --------------~~~~aL~~A--a~rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G 349 (458)
T 3hsi_A 286 --------------TLQHKIATL--LENGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESG 349 (458)
T ss_dssp --------------HHHHHHHHH--HTTTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred --------------HHHHHHHHH--HHCCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCC
Confidence 788999998 779999999999975322 1222221 0000001000001111135788888
Q ss_pred -cCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeEEEeccc--ccC
Q 004774 667 -VDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANS--FLG 728 (731)
Q Consensus 667 -v~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~--~~~ 728 (731)
++ +.+|.. ..+++|||+++|||++++|||+|||+||+.+|+|++++|++++ +++
T Consensus 350 ~i~------V~i~~~--~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~~~l~~ 406 (458)
T 3hsi_A 350 QLV------VRLWRD--GDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLA 406 (458)
T ss_dssp SEE------EEEECB--TTBEECCCEEEETTTEEEEECCCCSHHHHHTCEEEEEEEECTTCSSHH
T ss_pred CeE------EEEEec--CCCceeEEEEEECCeEEEecCCCCCcchhhhCceeEEEEeCCcHHHHH
Confidence 22 224443 3478999999999999999999999999999999999999997 543
No 2
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=1.5e-41 Score=387.33 Aligned_cols=374 Identities=14% Similarity=0.071 Sum_probs=211.5
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEe-eccceeeeccCCCCCCCCCCcHHHHHHHHhhcC--CEEEEEEeCCCCccCccCc
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~-~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rG--VkVriLv~D~~gs~~~~~~ 317 (731)
+++|++|+++|++||++|+|++|+| .+ +. .| .+|.++|++||+|| |+||||+ |++|+.....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~-------d~----~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~- 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPN-------GA----FQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCC-------HH----HH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCC-------Ch----HH--HHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-
Confidence 5799999999999999999999994 43 22 34 79999999999999 9999996 8866542100
Q ss_pred cCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCC
Q 004774 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (731)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r 397 (731)
....+.+.|+.+|+++.. ..|.....+.. ....+.|||||++||||+ +||+||+||++++
T Consensus 130 --------~~~~~~~~L~~~g~~~~~--~~~~~~~~~~~--~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 130 --------IPSKYRDELTAKLGKAAE--NITLNVASMTT--SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp --------HHHHHHHHHHHHHGGGGG--GEEEEEEEECS--BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred --------CCHHHHHHHHhcccceee--cCccccccccc--cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 024455666665554310 01100000000 001234999999999999 9999999997545
Q ss_pred CCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccc-hhhhhhccccccc
Q 004774 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLT-ELTFKFKRVSHWR 476 (731)
Q Consensus 398 ~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~-~~~~~~~~~~~~~ 476 (731)
|.+. ..+|||++++++||+|.+++..|.++|+...... .+.. .|.
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~------~~~ 235 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIAS------VWF 235 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTT------EEE
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccCChhh------hcc
Confidence 5431 1379999999999999999999999998765321 0000 000
Q ss_pred ccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchh-----hhhhhhh
Q 004774 477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED-----IDDQSLI 551 (731)
Q Consensus 477 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~-----~~~~~~~ 551 (731)
... ...+..+... . ...|.. ....+...+|+............|+.... .....++
T Consensus 236 ~~~-~~~~~~~~~~-~---------~~~p~~--------~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~ 296 (506)
T 1v0w_A 236 AAS-GNAGCMPTMH-K---------DTNPKA--------SPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCV 296 (506)
T ss_dssp EES-TTCCCCTTHH-H---------HHSCSS--------CCCCSSEEEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSS
T ss_pred ccc-cccccCchhc-c---------ccCccc--------CcccccccceecccccceeecCCccccccccCcccccceee
Confidence 000 0000000000 0 000100 00112223222211100000000211000 0000000
Q ss_pred cccc--------ccchhHHHHHHHHHHHhccceEEEec----ccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCC
Q 004774 552 CAKD--------VVIDKSIQTAYIQAIRSAQHFIYIEN----QYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANE 619 (731)
Q Consensus 552 ~~~~--------~~~e~sI~~ayl~~I~~Ak~~IyIen----qYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~ 619 (731)
+..+ ...+..+..+|+.+|.+||++|||++ |||+|... ....+..+|.+| ++|
T Consensus 297 ~d~P~~~~~~~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~p~~~-------------~~~~i~~aL~~A--a~r 361 (506)
T 1v0w_A 297 VGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPR-------------YDIRLYDALAAK--MAA 361 (506)
T ss_dssp TTCCCTTTSCHHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTTTSCS-------------CCHHHHHHHHHH--HHT
T ss_pred ccccccccCcccccccccHHHHHHHHHhCcCcEEEEEeccccccccCccc-------------chHHHHHHHHHH--HhC
Confidence 0000 01135799999999999999999998 56666321 113788999988 569
Q ss_pred CcEEEEEecCCCCCCCCChhHHHHHHHHHHH----HHHHHH--HHHHHHHhcccC-CC--cCCeEEEEec---------c
Q 004774 620 RFAVYVIIPMWPEGDPKTNTVQEILFWQSQT----MQMMYS--VVAQELREMQVD-AH--PQDYLSFYCL---------G 681 (731)
Q Consensus 620 gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~t----i~~~~~--~~~~~Ll~~Gv~-~~--~~~yi~~y~~---------~ 681 (731)
||+|+||+|..++. ..+. +.... +..... .-...|+++|+- ++ ....+.+|.+ +
T Consensus 362 GV~VrIl~~~~~~~----~~~~----~a~~~~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~~~ 433 (506)
T 1v0w_A 362 GVKVRIVVSDPANR----GAVG----SGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWAD 433 (506)
T ss_dssp TCEEEEEECCGGGC----C----------CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCTT
T ss_pred CCcEEEEeCCCCch----HHHH----HhHHHHHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCcccccc
Confidence 99999999987632 1111 10000 000000 001123333310 00 0000123211 1
Q ss_pred CCCCCCCCccccCCCceeeeccccccccccccccceeEEEecccccC
Q 004774 682 KREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 682 ~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
....++|+|+|||||++++|||+|||+||+ +|++++|+++++++
T Consensus 434 ~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~---~E~~l~i~~~~~a~ 477 (506)
T 1v0w_A 434 GHPYAQHHKLVSVDSSTFYIGSKNLYPSWL---QDFGYIVESPEAAK 477 (506)
T ss_dssp SCCCCBCCEEEEETTTEEEEESCCSSCCCS---BCEEEEEECHHHHH
T ss_pred CccccceEEEEEECCcEEEEeCCCCCCcch---hhceeEecCHHHHH
Confidence 124689999999999999999999999999 49999999998764
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.95 E-value=6.4e-28 Score=279.18 Aligned_cols=271 Identities=14% Similarity=0.129 Sum_probs=188.7
Q ss_pred chHHHHHHHHHhccc-----EEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccC
Q 004774 242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (731)
Q Consensus 242 ~~f~~l~~aI~~Ak~-----sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~ 316 (731)
+.|+.+++.|++|++ +|+|+.|++.+ + ..+.++|++||+|||+|+||+ |..+.+..
T Consensus 347 ~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~-------d---------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~-- 407 (687)
T 1xdp_A 347 HTFEHVLELLRQASFDPSVLAIKINIYRVAK-------D---------SRIIDSMIHAAHNGKKVTVVV-ELQARFDE-- 407 (687)
T ss_dssp BCTHHHHHHHHHHHHCTTEEEEEEEESSCCT-------T---------CHHHHHHHHHHHTTCEEEEEE-CTTCSSTT--
T ss_pred hhhhhHHHHHHHHhhCCcceEEEEEeeeecC-------c---------HHHHHHHHHHHhcCCEEEEEE-CCCcccch--
Confidence 578999999999997 99999987643 1 689999999999999999997 98763210
Q ss_pred ccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceE---EEEccccC
Q 004774 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGIDL 393 (731)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~v---afvGG~NI 393 (731)
. ....+.+.|..+||+|... .| .+++|+|++|||++.. ..+ ||+||.|+
T Consensus 408 -~-------~n~~~~~~L~~aGV~V~~~--~~--------------~~k~H~Ki~VID~re~----~~i~~~a~iGS~N~ 459 (687)
T 1xdp_A 408 -E-------ANIHWAKRLTEAGVHVIFS--AP--------------GLKIHAKLFLISRKEN----GEVVRYAHIGTGNF 459 (687)
T ss_dssp -T-------TTTTTTHHHHHHTCEEEEC--CT--------------TCEECCEEEEEEEEET----TEEEEEEEEESSCS
T ss_pred -h-------hHHHHHHHHHHCCCEEEEe--cC--------------CccccceEEEEEeccC----CeEEEEEEEeCCcC
Confidence 0 0124566678899999742 12 2468999999995210 116 99999999
Q ss_pred CCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhcccchhhhhhccc
Q 004774 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (731)
Q Consensus 394 ~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~~Wn~~~~~~~~~~~~~~~ 472 (731)
....+ ..|+|+++.+.|| +|.+++..|...|..+....
T Consensus 460 d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~--------- 498 (687)
T 1xdp_A 460 NEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT--------- 498 (687)
T ss_dssp CTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC---------
T ss_pred Ccchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc---------
Confidence 77321 2589999999987 69999999999997542210
Q ss_pred ccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhc
Q 004774 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (731)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~ 552 (731)
. . +++.+ |..
T Consensus 499 -------------~------------------~-------------------~l~~s---------P~~----------- 508 (687)
T 1xdp_A 499 -------------F------------------D-------------------YLMVS---------PQN----------- 508 (687)
T ss_dssp -------------C------------------S-------------------SCEEE---------TTS-----------
T ss_pred -------------h------------------h-------------------heeeC---------Cch-----------
Confidence 0 0 00111 211
Q ss_pred cccccchhHHHHHHHHHHHhccc----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 004774 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (731)
Q Consensus 553 ~~~~~~e~sI~~ayl~~I~~Ak~----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP 628 (731)
....+...+...|+.|++ +|+|.++| +|+. .+..+|.+| +.+||+|+||+.
T Consensus 509 -----~~~~l~~~I~~ei~~A~~g~~~~I~i~~~~-lpD~-----------------~ii~AL~~A--a~rGV~VrLivr 563 (687)
T 1xdp_A 509 -----SRRLLYEMVDREIANAQQGLPSGITLKLNN-LVDK-----------------GLVDRLYAA--SSSGVPVNLLVR 563 (687)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCCEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCCEEEEES
T ss_pred -----hhHHHHHHHHHHHHHHHcCCCCEEEEEeCC-CCCH-----------------HHHHHHHHH--HHCCCEEEEEEe
Confidence 123345556666777887 89999998 6764 788999999 669999999995
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCC-CCCccccC---CCceeeeccc
Q 004774 629 MWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA-PKDVLANN---GDKMLGISFS 704 (731)
Q Consensus 629 ~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~-lHaK~~iv---Dd~~~~vGS~ 704 (731)
+.-. | ..||. ...+.+.+.... +.+ -|+|++.+ ||++++||||
T Consensus 564 g~c~-----------------------------l-~pgvp-~~sdni~V~s~~--~r~Leh~rI~~f~~~dd~~~~IGSA 610 (687)
T 1xdp_A 564 GMCS-----------------------------L-IPNLE-GISDNIRAISIV--DRYLEHDRVYIFENGGDKKVYLSSA 610 (687)
T ss_dssp SCBC-----------------------------B-CTTCT-TTSTTEEEEEEC--SSSEECCCEEEECGGGSCEEEEESC
T ss_pred cccc-----------------------------c-CCCCC-CCCCCEEEEEeh--hHHhhCCeEEEEcCCCCCEEEEEcC
Confidence 4310 0 00110 000111111110 112 26777766 7899999999
Q ss_pred cccccccccccceeEEEecccccC
Q 004774 705 NFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 705 Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
|+|.|||.+|.|+++.|+|+++++
T Consensus 611 N~d~Rsl~~n~Ev~~~I~d~~~~~ 634 (687)
T 1xdp_A 611 DWMTRNIDYRIEVATPLLDPRLKQ 634 (687)
T ss_dssp CBSHHHHHSEEEEEEECCSHHHHH
T ss_pred ccchhhhhhheeeeEEecCHHHHH
Confidence 999999999999999999998764
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.94 E-value=4.7e-27 Score=269.78 Aligned_cols=268 Identities=12% Similarity=0.132 Sum_probs=187.7
Q ss_pred cchHHHHHHHHHhccc-----EEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCcc
Q 004774 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~ 315 (731)
.+.|+.++++|++|++ +|+++.|++.. ...|.++|++||++||+|++|+ | .++...
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~----------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arfd- 411 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-E-LKARFD- 411 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcC----------------CHHHHHHHHHHHHCCCEEEEEE-e-CCCCcc-
Confidence 3689999999999999 99999998732 1689999999999999999997 8 665421
Q ss_pred CccCCCcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccC--CCCCCcceEEEEccccC
Q 004774 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL 393 (731)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~--~~~~~~~~vafvGG~NI 393 (731)
...+..+.+.|+.+||+|.+. + .++++|+|++|||++ ..|.- +..+++|--|.
T Consensus 412 --------ee~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~ 466 (705)
T 2o8r_A 412 --------EENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCS
T ss_pred --------hhhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCCce-eEEEeccccce
Confidence 011246788899999999741 1 347899999999986 22211 11222221121
Q ss_pred CCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhcccchhhhhhccc
Q 004774 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (731)
Q Consensus 394 ~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp-av~dl~~~F~~~Wn~~~~~~~~~~~~~~~ 472 (731)
.+ ....-|.|+++...+| +|.+++..|...|... ..
T Consensus 467 n~--------------------------------~tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~--~~--------- 503 (705)
T 2o8r_A 467 NE--------------------------------TTARIYSDTTLMTANTDIVHDVYRLFRILDGDP--EP--------- 503 (705)
T ss_dssp SC--------------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHHHTTCC--CC---------
T ss_pred ee--------------------------------eEEEEEeeeeeeecChHHHHHHHHHHHHHhCCC--CC---------
Confidence 11 0112467777777775 6799999996655321 00
Q ss_pred ccccccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhc
Q 004774 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (731)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~ 552 (731)
+ + ..|++.+ |..
T Consensus 504 --------------------------------~--------------~--~~~l~~s---------P~~----------- 515 (705)
T 2o8r_A 504 --------------------------------A--------------R--FSRLLVA---------RYN----------- 515 (705)
T ss_dssp --------------------------------S--------------C--CSSCEET---------TTT-----------
T ss_pred --------------------------------C--------------C--ceEEEEC---------Cch-----------
Confidence 0 0 0122322 332
Q ss_pred cccccchhHHHHHHHHHHHhccc----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-
Q 004774 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII- 627 (731)
Q Consensus 553 ~~~~~~e~sI~~ayl~~I~~Ak~----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~Ivl- 627 (731)
....|.+.+...|.+|++ +|+|.+|| +|+. .+..+|..| +.+||+|.||+
T Consensus 516 -----~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D~-----------------~ii~aL~~A--s~~GV~V~LIVR 570 (705)
T 2o8r_A 516 -----MGEAITNLIEREIENVKRGKRGYMLLKMNG-LQDK-----------------NVITQLYRA--SEAGVEIDLIVR 570 (705)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCEEEEEES
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEEc
Confidence 136789999999999999 99999999 7874 788999999 66999999999
Q ss_pred ------cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccC---CCce
Q 004774 628 ------PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANN---GDKM 698 (731)
Q Consensus 628 ------P~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~iv---Dd~~ 698 (731)
|+.| -.++..|+ +++..|++ |+|++.. ||++
T Consensus 571 GiC~L~Pgv~--~sdni~V~---------------Sivgr~Le-----------------------h~RIy~f~~gd~~~ 610 (705)
T 2o8r_A 571 GICCLVPDMP--QSRNIRVT---------------RLVDMYLE-----------------------HSRIWCFHNGGKEE 610 (705)
T ss_dssp SCBCSCCSSG--GGTTEEEE---------------ECCSSSEE-----------------------CCCEEEECGGGSCE
T ss_pred cccccCCCCC--CCCCeEEE---------------eeHHHHHh-----------------------cCEEEEEECCCCcE
Confidence 7622 11122221 23333333 4555554 8899
Q ss_pred eeeccccccccccccccceeEEEecccccC
Q 004774 699 LGISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 699 ~~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
++|||||+|+|||.+|.|+++.|+|+++.+
T Consensus 611 ~~IGSAn~m~Rnl~~r~Ev~~~i~d~~~~~ 640 (705)
T 2o8r_A 611 VFISSADWMKRNLYNRIETACPVLDPTLRR 640 (705)
T ss_dssp EEEESCCBCHHHHHTSBCEEEECCSHHHHH
T ss_pred EEEeccccchhhhhheeEEEEEEcCHHHHH
Confidence 999999999999999999999999998764
No 5
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=168.76 Aligned_cols=130 Identities=22% Similarity=0.368 Sum_probs=105.9
Q ss_pred ceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC
Q 004774 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (731)
Q Consensus 10 ~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~ 89 (731)
..+....|.|+|+|++|++|+++|..+.++ ++. ...+++||||+|.++
T Consensus 22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~------------------------------~~~g~sDPYv~v~l~ 69 (157)
T 2fk9_A 22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFK------------------------------KGHQLLDPYLTVSVD 69 (157)
T ss_dssp --CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSS------------------------------SSCCCCCEEEEEEET
T ss_pred chhccCccEEEEEEEEEECCCCcccccccc--ccc------------------------------cCCCCCCeEEEEEEC
Confidence 346689999999999999999877543210 110 012348999999999
Q ss_pred CeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCC----ceeEEEEEccCCCC
Q 004774 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG 164 (731)
Q Consensus 90 ~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~----~~~~~w~~l~~~~~ 164 (731)
+.++.+|+++++|.||+|||+|.|.+.. ...|.|+|||++.++ +++||++.|+|.++..+ ...+.||+|.
T Consensus 70 ~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~---- 144 (157)
T 2fk9_A 70 QVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE---- 144 (157)
T ss_dssp TEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB----
T ss_pred CEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC----
Confidence 9887899999999999999999999865 458999999999988 89999999999999854 6789999992
Q ss_pred CCCCCCceEEEEEEEe
Q 004774 165 SPPKPGASIQLELKFT 180 (731)
Q Consensus 165 ~~~~~~g~L~lsl~y~ 180 (731)
+.|+|++.++|.
T Consensus 145 ----~~G~i~l~l~~~ 156 (157)
T 2fk9_A 145 ----PEGKVFVVITLT 156 (157)
T ss_dssp ----SSCEEEEEEEEC
T ss_pred ----CCcEEEEEEEEE
Confidence 269999999874
No 6
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=159.88 Aligned_cols=124 Identities=28% Similarity=0.484 Sum_probs=107.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
..|.|.|+|++|++|+.++. +. +||||++.+.+.+ .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 46899999999999998776 54 9999999999865 7
Q ss_pred eeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEE---ccCCCCCC
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~---l~~~~~~~ 166 (731)
+|++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||++.|+|.++..+...+.|++ |.+..+.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~- 119 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ- 119 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence 999999999999999999998753 577999999999987 8999999999999988888889988 6555443
Q ss_pred CCCCceEEEEEEEeecCC
Q 004774 167 PKPGASIQLELKFTPCDK 184 (731)
Q Consensus 167 ~~~~g~L~lsl~y~p~~~ 184 (731)
...|+|+++++|.|.+.
T Consensus 120 -~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 120 -DTGATIDLVIGYDPPSG 136 (140)
T ss_dssp -EEEEEEEEEEEECCCBS
T ss_pred -CCCCEEEEEEEEECCCC
Confidence 24699999999999655
No 7
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.77 E-value=6.2e-19 Score=175.53 Aligned_cols=135 Identities=14% Similarity=0.194 Sum_probs=102.1
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~ 320 (731)
++.|.+|+++|++|+++|+|++|+|+. ..|.++|.+||+|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 578999999999999999999998831 579999999999999999996 8642211
Q ss_pred CcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 004774 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (731)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~ 400 (731)
.......|..+||+++... + ...+|+|++|||++ ++|+||.|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~--~--------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQ--D--------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECC--S--------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCccccc--c--------------cccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 0123456788999998531 1 13569999999999 999999999874321
Q ss_pred CCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcc
Q 004774 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (731)
Q Consensus 401 ~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~ 461 (731)
..|-++.+.-.+++|.++++.|.+.|+....
T Consensus 149 ------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 ------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp ------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred ------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 1233444444456799999999999987643
No 8
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.76 E-value=4.5e-18 Score=158.36 Aligned_cols=129 Identities=24% Similarity=0.358 Sum_probs=110.8
Q ss_pred CCCceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEE
Q 004774 7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV 86 (731)
Q Consensus 7 ~~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v 86 (731)
+.+.......|.|.|+|++|++|+.++..+. +||||++
T Consensus 3 ~~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v 40 (133)
T 2ep6_A 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLL 40 (133)
T ss_dssp SCCCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEE
T ss_pred cccccccCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEE
Confidence 3455566778999999999999998876664 9999999
Q ss_pred EECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 87 ~l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
.+.+.+ .+|++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.+++.++..+. ..|++|....++
T Consensus 41 ~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~ 117 (133)
T 2ep6_A 41 ELGNDR-LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE 117 (133)
T ss_dssp EETTEE-EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT
T ss_pred EECCEE-EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCC
Confidence 999865 6999999999999999999999988888999999999997 899999999999997654 589999655433
Q ss_pred CCCCCceEEEEEEEee
Q 004774 166 PPKPGASIQLELKFTP 181 (731)
Q Consensus 166 ~~~~~g~L~lsl~y~p 181 (731)
. ...|+|+++++|..
T Consensus 118 ~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 118 Q-AFKGVIYLEMDLIY 132 (133)
T ss_dssp S-CCSSEEEEEEEEEE
T ss_pred C-ccceEEEEEEEEEe
Confidence 2 56899999999864
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.76 E-value=4.7e-18 Score=162.05 Aligned_cols=124 Identities=21% Similarity=0.365 Sum_probs=100.9
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|+|+|++|++|+.++..+. +||||++.+..
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 55 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG 55 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46789999999999998876654 89999999964
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCcee------EEEEEccCC
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI------SRWYDIIAP 162 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~------~~w~~l~~~ 162 (731)
....+|++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.|+|.++..+... ..||+|...
T Consensus 56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~ 135 (153)
T 3b7y_A 56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135 (153)
T ss_dssp EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence 3568999999999999999999999988888999999999987 89999999999999865432 589999543
Q ss_pred CCCCCCCCceEEEEEEEee
Q 004774 163 SGSPPKPGASIQLELKFTP 181 (731)
Q Consensus 163 ~~~~~~~~g~L~lsl~y~p 181 (731)
.+ .....|+|+++++|.|
T Consensus 136 ~~-~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 136 SH-KSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ST-TCCCCSEEEEEEEECC
T ss_pred cC-CCCcceEEEEEEEEeC
Confidence 32 3356899999999986
No 10
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.76 E-value=3.2e-18 Score=159.86 Aligned_cols=125 Identities=24% Similarity=0.483 Sum_probs=108.9
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeee
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~ 93 (731)
...|.|+|+|++|++|+.++..+. +||||+|.+.+..
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~- 43 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD- 43 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-
T ss_pred CCcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-
Confidence 367999999999999998876654 9999999998866
Q ss_pred eeecccc-CCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccc-cCCceeEEEEEccCCCCCCCCCC
Q 004774 94 ARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPG 170 (731)
Q Consensus 94 ~~T~v~~-~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~-~~~~~~~~w~~l~~~~~~~~~~~ 170 (731)
.+|++++ ++.||+|||+|.|.+......|.|+|||++.++ +++||++.|+|.++ ..++....||+|. ..+ +..
T Consensus 44 ~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~ 119 (136)
T 1wfj_A 44 QKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYK 119 (136)
T ss_dssp EECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEE
T ss_pred ceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccC
Confidence 5999998 899999999999999987788999999999987 89999999999999 4566678899996 322 458
Q ss_pred ceEEEEEEEeecCCC
Q 004774 171 ASIQLELKFTPCDKN 185 (731)
Q Consensus 171 g~L~lsl~y~p~~~~ 185 (731)
|+|+++++|.|....
T Consensus 120 G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 120 GEIWVALSFKPSGPS 134 (136)
T ss_dssp EEEEEEEEEEECCSC
T ss_pred EEEEEEEEEEeCCCC
Confidence 999999999997653
No 11
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.76 E-value=2.5e-17 Score=156.09 Aligned_cols=124 Identities=23% Similarity=0.435 Sum_probs=105.0
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
+..+.|.|.|+|++|++|+.++..+. +||||++.++..
T Consensus 12 ~~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~ 49 (148)
T 3kwu_A 12 TSKWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKT 49 (148)
T ss_dssp ---CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTE
T ss_pred ccccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCE
Confidence 34567999999999999999887665 999999999875
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCC-----------C-CceeEEEecccccccCCceeEEEEEc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~-----------~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
. .+|++++++.||.|||+|.|.+..+...|.|+|||.+.+ + +++||++.++|.++. ...+.|++|
T Consensus 50 ~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L 126 (148)
T 3kwu_A 50 K-KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNL 126 (148)
T ss_dssp E-EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEEC
T ss_pred E-EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEc
Confidence 5 699999999999999999999988888999999999985 4 999999999999984 456799999
Q ss_pred cCCCCCCCCCCceEEEEEEEee
Q 004774 160 IAPSGSPPKPGASIQLELKFTP 181 (731)
Q Consensus 160 ~~~~~~~~~~~g~L~lsl~y~p 181 (731)
. +.+......|+|+|+++|.-
T Consensus 127 ~-~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 127 D-KRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp B-CSSTTCCCCCEEEEEEEEEC
T ss_pred c-cCCCCCCCceEEEEEEEEEe
Confidence 5 33333356799999999863
No 12
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.75 E-value=6.6e-18 Score=157.93 Aligned_cols=129 Identities=19% Similarity=0.400 Sum_probs=105.5
Q ss_pred eeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeee
Q 004774 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (731)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~ 93 (731)
...|.|.|+|++|++|+++|..+.+. -|++ .+.+.+||||++.+++...
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~-----------------------~g~~--------~~~~~~DPyv~v~l~~~~~ 51 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDA-----------------------VGPR--------PQTFLLDPYIALNVDDSRI 51 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC------------------------CCSS--------CCCCCCCEEEEEEETTEEE
T ss_pred ccceEEEEEEEeCcCCCCcccccccc-----------------------cccc--------cCCcCcCcEEEEEECCeEe
Confidence 57899999999999999877543200 0111 1223489999999998887
Q ss_pred eeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCC--ceeEEEEEccCCCCCCCCCC
Q 004774 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKPG 170 (731)
Q Consensus 94 ~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~--~~~~~w~~l~~~~~~~~~~~ 170 (731)
.+|++++++.||+|||+|.|.+... ..|.|+|||++.++ +++||++.+++.++..+ ...+.|++| . +.
T Consensus 52 ~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L-~-------~~ 122 (136)
T 1gmi_A 52 GQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL-E-------PE 122 (136)
T ss_dssp EECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC-B-------SS
T ss_pred eeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc-C-------CC
Confidence 8999999999999999999998766 78999999999887 89999999999999864 345889998 2 36
Q ss_pred ceEEEEEEEeec
Q 004774 171 ASIQLELKFTPC 182 (731)
Q Consensus 171 g~L~lsl~y~p~ 182 (731)
|+|+++++|.+.
T Consensus 123 G~i~l~l~~~~~ 134 (136)
T 1gmi_A 123 GKVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEEEEE
T ss_pred eEEEEEEEEEec
Confidence 999999999874
No 13
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.74 E-value=2.4e-17 Score=161.19 Aligned_cols=124 Identities=20% Similarity=0.369 Sum_probs=98.9
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-----
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----- 90 (731)
.|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 5789999999999998887665 99999999964
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCcee-E-----EEEEccCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~-~-----~w~~l~~~~ 163 (731)
..+.+|++++++.||+|||+|.|.+......|.|+|||.+.++ +++||++.|+|.++..+... + .||+|...
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~- 123 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR- 123 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCS-
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc-
Confidence 1467999999999999999999999988788999999999987 89999999999999865433 2 79999533
Q ss_pred CCCCCCCceEEEEEEEeec
Q 004774 164 GSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 164 ~~~~~~~g~L~lsl~y~p~ 182 (731)
....+..|+|+|+++|.|.
T Consensus 124 ~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 124 SHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp STTCCCCSEEEEEEEECC-
T ss_pred CCCCccCEEEEEEEEEEeC
Confidence 3333568999999999997
No 14
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.71 E-value=5.5e-17 Score=149.22 Aligned_cols=118 Identities=25% Similarity=0.436 Sum_probs=98.5
Q ss_pred ccEEEEEEEEeeCCCCC---CCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--
Q 004774 16 HGDLDLKIIRARRLPNM---DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~-- 90 (731)
.|.|.|+|++|++|+.+ +..+ .+||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g------------------------------------------~~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLD------------------------------------------TPDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHC------------------------------------------CCCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCC------------------------------------------CCCCEEEEEEccCC
Confidence 47899999999999974 3223 289999999986
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecC-CCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCCCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~-~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~ 169 (731)
....+|++++++.||+|||+|.|.+.. ....|.|+|||++.+++++||++.++|.++..+.....|++|. + ..
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~-----~~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VT 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TE
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-C-----Cc
Confidence 356899999999999999999999954 4577999999999988999999999999999888899999993 2 23
Q ss_pred CceEEEEEEEee
Q 004774 170 GASIQLELKFTP 181 (731)
Q Consensus 170 ~g~L~lsl~y~p 181 (731)
.|+|++++.-.|
T Consensus 114 ~g~i~~~le~~~ 125 (126)
T 1rlw_A 114 EMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEeCC
Confidence 567777765443
No 15
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.71 E-value=2.9e-17 Score=156.73 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
..+.+.++.+|.+|+++|+|+++|| ++. .+..+|.+| ++|||+|+||++..... ..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~-~~~-----------------~i~~aL~~a--~~rGV~Vril~~~~~~~---~~- 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSF-TAP-----------------DIMKALVAA--KKRGVDVKIVIDERGNT---GR- 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSB-CCH-----------------HHHHHHHHH--HHTTCEEEEEEESTTCC---SH-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEe-CCH-----------------HHHHHHHHH--HHCCCEEEEEEeCcccc---cc-
Confidence 4688999999999999999999999 332 788899888 56999999999976431 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeE
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHI 719 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~ 719 (731)
....+++.|+++|++ +..+.. .+.+|+|++|||++++++||+|++.||+..|.|+++
T Consensus 69 --------------~~~~~~~~L~~~gv~------v~~~~~---~~~~H~K~~iiD~~~~~iGS~N~~~~~~~~n~E~~~ 125 (155)
T 1byr_A 69 --------------ASIAAMNYIANSGIP------LRTDSN---FPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAV 125 (155)
T ss_dssp --------------HHHHHHHHHHHTTCC------EEEECS---SSCCCCCEEEETTTEEEEESCCBSHHHHHTSCEEEE
T ss_pred --------------ccHHHHHHHHHCCCe------EEEcCC---cccccceEEEECCCEEEEECCCCCccccccCcccEE
Confidence 123566788899987 444432 357999999999999999999999999999999999
Q ss_pred EEecc-cccC
Q 004774 720 HIFAN-SFLG 728 (731)
Q Consensus 720 ~i~~~-~~~~ 728 (731)
.+.++ ++++
T Consensus 126 ~i~~~~~l~~ 135 (155)
T 1byr_A 126 VIWNMPKLAE 135 (155)
T ss_dssp EEESCHHHHH
T ss_pred EEcCcHHHHH
Confidence 99994 6543
No 16
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.69 E-value=2.7e-16 Score=146.04 Aligned_cols=120 Identities=19% Similarity=0.352 Sum_probs=99.8
Q ss_pred cEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-eeeee
Q 004774 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (731)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~-~~~~~ 95 (731)
..|+|+|++|++|++++..+. +||||++.+.+ ....+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 469999999999999887665 99999999975 45689
Q ss_pred eccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC----CceeEEEecccccc-cCCceeEEEEEccCCC-CCCCCC
Q 004774 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTI-ATGELISRWYDIIAPS-GSPPKP 169 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~----~~~iG~~~i~l~~~-~~~~~~~~w~~l~~~~-~~~~~~ 169 (731)
|++++++.||+|||+|.|.+.... .|.|+|||++.++ +++||++.+++.++ ........|++|.... ..+...
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998765 4999999999886 69999999999988 3344456899996542 233456
Q ss_pred CceEEEEEEE
Q 004774 170 GASIQLELKF 179 (731)
Q Consensus 170 ~g~L~lsl~y 179 (731)
.|+|.+++++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999875
No 17
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.68 E-value=1.9e-16 Score=154.38 Aligned_cols=127 Identities=17% Similarity=0.281 Sum_probs=103.1
Q ss_pred eeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004774 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (731)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~ 92 (731)
....+.|.|+|++|++|+..+..+. +||||+|.+++ .
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~ 68 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-Q 68 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-E
T ss_pred cCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-E
Confidence 3578889999999999984332222 89999999988 5
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCc-----eeEEEEEccCCCCCC
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-----LISRWYDIIAPSGSP 166 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~-----~~~~w~~l~~~~~~~ 166 (731)
..+|++++++.||+|||+|.|.+.. ...|.|+|||++.++ +++||++.++|.++..+. ....|++|.... ..
T Consensus 69 ~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-~~ 146 (173)
T 2nq3_A 69 SKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-EP 146 (173)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-CT
T ss_pred EeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-CC
Confidence 5899999999999999999999864 778999999999987 899999999999986321 236799996542 23
Q ss_pred CCCCceEEEEEEEeecCC
Q 004774 167 PKPGASIQLELKFTPCDK 184 (731)
Q Consensus 167 ~~~~g~L~lsl~y~p~~~ 184 (731)
....|+|.+++.|.+...
T Consensus 147 ~~~~G~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 147 TETIGDLSICLDGLQLES 164 (173)
T ss_dssp TSEEEEEEEEEESEECC-
T ss_pred CcccEEEEEEEeeeecch
Confidence 356899999999998743
No 18
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.66 E-value=4.1e-16 Score=148.75 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=106.9
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~ 320 (731)
.++++.+.++|++|+++|+|+.|.|. + ..|.++|.+|++|||+||||+ |..+....
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~--------~---------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------ 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFT--------A---------PDIMKALVAAKKRGVDVKIVI-DERGNTGR------ 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBC--------C---------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeC--------C---------HHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence 35799999999999999999998762 1 479999999999999999996 77653210
Q ss_pred CcccCChHHHHhhhcCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 004774 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (731)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~ 400 (731)
......+.|.++|++++..+ + ..++|.|++|||++ ++++||.|+....+
T Consensus 69 -----~~~~~~~~L~~~gv~v~~~~--~--------------~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 69 -----ASIAAMNYIANSGIPLRTDS--N--------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp -----HHHHHHHHHHHTTCCEEEEC--S--------------SSCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred -----ccHHHHHHHHHCCCeEEEcC--C--------------cccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 02345666778999998532 1 12569999999998 99999999987311
Q ss_pred CCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh--HHHHHHHHHHHHHHhhc
Q 004774 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 460 (731)
Q Consensus 401 ~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gp--av~dl~~~F~~~Wn~~~ 460 (731)
..+++..+.+.|+ ++.++...|.+.|+.+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2357899999994 89999999999998754
No 19
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.65 E-value=1.1e-15 Score=142.50 Aligned_cols=109 Identities=17% Similarity=0.412 Sum_probs=93.4
Q ss_pred CceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE
Q 004774 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (731)
Q Consensus 9 ~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l 88 (731)
.++..+..+.|.|+|++|++|+. +..+. +||||+|.+
T Consensus 12 ~~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v~l 48 (134)
T 2b3r_A 12 KLSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKTYL 48 (134)
T ss_dssp EEEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEEEE
T ss_pred EEEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEEEE
Confidence 34456788999999999999986 54443 899999998
Q ss_pred C----CeeeeeeccccCCCCCeEeeEEEEe-ecC---CCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEc
Q 004774 89 P----QATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 89 ~----~~~~~~T~v~~~~~~P~wne~f~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
. .....||++++++.||+|||+|.|. +.. ....|.|+|||.+.++ +++||++.++|.++..+...+.||+|
T Consensus 49 ~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 128 (134)
T 2b3r_A 49 LPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128 (134)
T ss_dssp ESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEEC
T ss_pred EcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEEC
Confidence 2 2345799999999999999999999 764 3468999999999987 89999999999999988889999999
Q ss_pred c
Q 004774 160 I 160 (731)
Q Consensus 160 ~ 160 (731)
.
T Consensus 129 ~ 129 (134)
T 2b3r_A 129 T 129 (134)
T ss_dssp B
T ss_pred C
Confidence 4
No 20
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.64 E-value=1.2e-16 Score=161.75 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=110.4
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~ 320 (731)
.+.++.|+++|++|++||+|+.|+|+ + ..|.++|++||+|||+||||+ |..++...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~--------~---------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------ 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFT--------S---------LFLADSIKRALQRGVIIRIIS-DGEMVYSK------ 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBC--------C---------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeC--------C---------HHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence 46899999999999999999999883 1 579999999999999999996 98765431
Q ss_pred CcccCChHHHHhhhcCCCceEEecccCCCCcccc--ccc--ccccccccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSY--FKQ--QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~--~~~--~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
......+..+++.++...........+ +.. ...+.+.++|+|++++|++ ++++||+|++..
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 122334555677665421111000000 000 0123467899999999998 999999998763
Q ss_pred CCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhccc
Q 004774 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL 462 (731)
Q Consensus 397 r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~ 462 (731)
.+ ...|.|+.+...|++|.++++.|.+.|+.....
T Consensus 178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~~ 212 (220)
T 4gel_A 178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAKT 212 (220)
T ss_dssp HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEEC
T ss_pred cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccCC
Confidence 21 236889999999999999999999999876543
No 21
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.63 E-value=1.5e-16 Score=158.22 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhH
Q 004774 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (731)
Q Consensus 561 sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v 640 (731)
+....++.+|.+||++|+|+. |++++. .|+.+|.+| ++|||+|+||+......
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~-y~~~~~-----------------~i~~aL~~a--a~rGV~Vrii~D~~~~~------- 98 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCL-FAFSSP-----------------QLGRAVQLL--HQRGVRVRVITDCDYMA------- 98 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEE-SCBCCH-----------------HHHHHHHHH--HHTTCEEEEEESSCCC--------
T ss_pred HHHHHHHHHHHHhheEEEEEE-EEeCCH-----------------HHHHHHHHH--HHcCCcEEEEEeccccc-------
Confidence 456789999999999999997 666663 789999999 67999999999642110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeEE
Q 004774 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIH 720 (731)
Q Consensus 641 ~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~ 720 (731)
...+.+..|.++||+ +..+. ..+.+|+|++|||++++++||+|++.||+..|.|..++
T Consensus 99 -------------~~~~~~~~l~~~gi~------v~~~~---~~~~~H~K~~viD~~~~~~GS~N~t~~~~~~n~E~~~~ 156 (196)
T 4ggj_A 99 -------------LNGSQIGLLRKAGIQ------VRHDQ---DLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLI 156 (196)
T ss_dssp ---------------CCHHHHHHHTTCE------EEECC---SSSCCCCEEEEETTTEEEEESCCBCHHHHHHCCEEEEE
T ss_pred -------------ccHHHHHHHHhcCCC------ccccc---ccccccCcEEEEcceEEEecCccCChhhhcccceeEEE
Confidence 012334668899986 32322 23579999999999999999999999999999999999
Q ss_pred EecccccC
Q 004774 721 IFANSFLG 728 (731)
Q Consensus 721 i~~~~~~~ 728 (731)
+.++++++
T Consensus 157 i~~~~~~~ 164 (196)
T 4ggj_A 157 MEDTEYVR 164 (196)
T ss_dssp ECCHHHHH
T ss_pred EECHHHHH
Confidence 99987653
No 22
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=1.6e-15 Score=144.46 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=92.2
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~~ 92 (731)
..+.|.|+|++|++|+.++..+. +||||+|.+. ...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 56899999999999998876654 8999999994 245
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEcc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (731)
..+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++..+...+.|++|.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 67999999999999999999998753 577999999999987 899999999999998888899999995
No 23
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=1.9e-15 Score=143.39 Aligned_cols=107 Identities=22% Similarity=0.389 Sum_probs=93.1
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
+.+..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 26 l~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~ 63 (149)
T 1a25_A 26 AHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPD 63 (149)
T ss_dssp EEESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESC
T ss_pred EEecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECC
Confidence 34668899999999999998876664 89999999964
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEeecCC--CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccC
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (731)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+ ..+.||+|..
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 64 PKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp TTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 4567999999999999999999998764 357999999999986 89999999999999865 5789999954
No 24
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.62 E-value=4.8e-15 Score=155.73 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=108.6
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--ee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~~ 92 (731)
..+.|.|+|++|++|+.++..+. +||||++.+.. ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 57899999999999998886665 99999999953 34
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~ 168 (731)
..+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.++|.++..+...+.|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 57999999999999999999998763 467999999999987 89999999999999988888999999655443345
Q ss_pred CCceEEEEEEEeec
Q 004774 169 PGASIQLELKFTPC 182 (731)
Q Consensus 169 ~~g~L~lsl~y~p~ 182 (731)
..|+|.+++.|.|.
T Consensus 135 ~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 135 KLGDICFSLRYVPT 148 (284)
T ss_dssp CCCEEEEEEEEETT
T ss_pred ccccEEEEEEecCc
Confidence 67999999999874
No 25
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.62 E-value=2.1e-15 Score=140.59 Aligned_cols=108 Identities=22% Similarity=0.401 Sum_probs=93.2
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-- 89 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~-- 89 (731)
+.+..|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 11 l~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~ 48 (137)
T 3rdl_A 11 AEVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 48 (137)
T ss_dssp EEEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEECC
T ss_pred EEEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEEcC
Confidence 44678999999999999998876665 9999999994
Q ss_pred --CeeeeeeccccCCCCCeEeeEEEEeecCCC--CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 90 --QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 90 --~~~~~~T~v~~~~~~P~wne~f~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
.....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||++.++|.++..+. ...||+|...
T Consensus 49 ~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 49 PKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp TTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 345689999999999999999999987643 56999999999987 899999999999998655 7899999644
No 26
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.62 E-value=7.2e-16 Score=144.87 Aligned_cols=108 Identities=28% Similarity=0.436 Sum_probs=93.4
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCe
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~ 91 (731)
+.|..|.|.|+|++|++|+.++..+. +||||++.+.+.
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~ 50 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPG 50 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTS
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEecC
Confidence 44668999999999999999886665 899999999763
Q ss_pred -------------eeeeeccccCCCCCeEeeEEEEe-ecC---CCCeEEEEEEEcCCCC-CceeEEEecccccccCCcee
Q 004774 92 -------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (731)
Q Consensus 92 -------------~~~~T~v~~~~~~P~wne~f~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~ 153 (731)
...+|++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||++.|+|.++..+...
T Consensus 51 ~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~ 130 (142)
T 1rh8_A 51 RGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT 130 (142)
T ss_dssp SCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC
T ss_pred CCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCC
Confidence 24799999999999999999997 543 3568999999999987 89999999999999877778
Q ss_pred EEEEEccC
Q 004774 154 SRWYDIIA 161 (731)
Q Consensus 154 ~~w~~l~~ 161 (731)
..||+|..
T Consensus 131 ~~W~~L~~ 138 (142)
T 1rh8_A 131 PRWYPLKE 138 (142)
T ss_dssp CEEEECBC
T ss_pred CeEEECCc
Confidence 89999953
No 27
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.62 E-value=2e-15 Score=146.83 Aligned_cols=109 Identities=22% Similarity=0.407 Sum_probs=94.5
Q ss_pred eeeeccEEEEEEEEeeCCCCCCC-CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~ 90 (731)
+.|..+.|.|+|++|++|+.++. .+. +||||+|.+..
T Consensus 25 l~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~ 62 (171)
T 2q3x_A 25 MEDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLE 62 (171)
T ss_dssp EEEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEEC
Confidence 33578999999999999998874 444 89999999854
Q ss_pred ----eeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEE-EcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 91 ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 91 ----~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~-d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
....+|++++++.||+|||+|.|.+......|.|+|| |++.++ +++||++.|+|.++..+...+.||+|...
T Consensus 63 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 63 NGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 2367999999999999999999999877788999999 999987 89999999999999888889999999543
No 28
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=143.92 Aligned_cols=105 Identities=17% Similarity=0.335 Sum_probs=90.6
Q ss_pred ccEEEEEEEEeeCCCCCC-CCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
.+.|.|+|++|++|+.++ ..+. +||||++.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR 59 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 589999999999999876 3443 89999999953
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
....+|++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||++.++|.++..+...+.||+|...
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 23679999999999999999999987753 45999999999987 89999999999999877778899999543
No 29
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.62 E-value=1.8e-15 Score=142.46 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.9
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~~ 92 (731)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 56889999999999998776554 9999999993 345
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEcc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (731)
..+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++..+...+.|++|.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 68999999999999999999998754 368999999999987 899999999999999888899999993
No 30
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.61 E-value=8.6e-16 Score=147.01 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=90.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC---e
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---~ 91 (731)
..+.|.|+|++|++|++++..+. +||||++.+.+ .
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 46889999999999998886665 99999999954 2
Q ss_pred --eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEeccccccc-CCceeEEEEEcc
Q 004774 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (731)
Q Consensus 92 --~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~-~~~~~~~w~~l~ 160 (731)
.+.||++++++.||+|||+|.|.+... ...|.|+|||+|.++ +++||++.++|.++. .+.....||+|+
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 368999999999999999999998763 467999999999987 899999999999995 467788999984
No 31
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=139.97 Aligned_cols=104 Identities=29% Similarity=0.473 Sum_probs=91.1
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~~ 92 (731)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 56889999999999998876654 9999999994 345
Q ss_pred eeeeccccCCCCCeEeeEEEEeecC----CCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEcc
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~----~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (731)
..+|++++++.||+|||+|.|.+.+ ....|.|+|||++.++ +++||++.++|.++..+.....|++|.
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 134 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECc
Confidence 6899999999999999999999543 2467999999999987 899999999999999888889999994
No 32
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=4.8e-15 Score=136.74 Aligned_cols=102 Identities=25% Similarity=0.446 Sum_probs=84.4
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----C
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~----~ 90 (731)
..+.|.|+|++|++|+.++..+. +||||++.+. .
T Consensus 16 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 53 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSD 53 (129)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSG
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCC
Confidence 35889999999999998876664 8999999992 3
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecC----CCCeEEEEEEEcCCCC---CceeEEEecccccccCCceeEEEEEc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~----~~~~l~~~v~d~~~~~---~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
....+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.++|.++.... ...||+|
T Consensus 54 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 54 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 456899999999999999999999543 2467999999999886 899999999999988654 7899998
No 33
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.58 E-value=9.8e-15 Score=139.17 Aligned_cols=108 Identities=22% Similarity=0.394 Sum_probs=90.8
Q ss_pred eeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
.....+.|.|+|++|++|+.++ .+. +||||+|.+..
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~~ 58 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIPE 58 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEESC
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEcC
Confidence 4457788999999999999877 343 89999999932
Q ss_pred ---eeeeeeccccCCCCCeEeeEEEEeec--CCCCeEEEEEEEcCCCC--CceeEEEecccccccC-CceeEEEEEccCC
Q 004774 91 ---ATVARTRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIAP 162 (731)
Q Consensus 91 ---~~~~~T~v~~~~~~P~wne~f~~~~~--~~~~~l~~~v~d~~~~~--~~~iG~~~i~l~~~~~-~~~~~~w~~l~~~ 162 (731)
....+|++++++.||+|||+|.|.+. .....|.|+|||.+.++ +++||++.++|.++.. +.....||+|...
T Consensus 59 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 59 DSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp SCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 34579999999999999999999984 34456999999999874 7999999999999984 7788899999654
No 34
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=5.3e-15 Score=138.59 Aligned_cols=105 Identities=25% Similarity=0.421 Sum_probs=89.3
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC----Ce
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~----~~ 91 (731)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5789999999999998886665 8999999983 24
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecC-C---CCeEEEEEEEcCCCC---CceeEEEecccccccCCceeEEEEEccCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAH-P---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~-~---~~~l~~~v~d~~~~~---~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
...+|++++++.||+|||+|.|.+.. . ...|.|+|||++.++ +++||++.|+|.++.... ...||+|....
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 56799999999999999999999533 2 367999999999986 799999999999987554 78999996443
No 35
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.58 E-value=7.6e-15 Score=137.91 Aligned_cols=104 Identities=29% Similarity=0.467 Sum_probs=90.8
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 56889999999999998876654 89999999964
Q ss_pred eeeeeeccccCCCCCeEeeEEEEe-ecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEcc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~ 160 (731)
....+|++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||++.++|.++..++....|++|.
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 356899999999999999999998 5443 267999999999987 799999999999999888888888883
No 36
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=9.5e-15 Score=136.82 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=87.3
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC---Ce
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---QA 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~---~~ 91 (731)
..+.|.|+|++|++ ++..+. +||||+|.+. ..
T Consensus 24 ~~~~L~V~v~~a~~---~d~~g~------------------------------------------sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 24 QKAELFVTRLEAVT---SNHDGG------------------------------------------CDCYVQGSVANRTGS 58 (138)
T ss_dssp TTTEEEEEEEEEEC---CCCSSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEEEc---CCCCCC------------------------------------------cceEEEEEEEcCCCc
Confidence 36889999999993 455554 9999999993 34
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (731)
...+|++++++.||+|||+|.|.+... ...|.|+|||.|.++ +++||++.++|.++..+...+.|++|..
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 467999999999999999999998764 457999999999987 8999999999999987778889999954
No 37
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=135.61 Aligned_cols=104 Identities=22% Similarity=0.418 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----e
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~----~ 91 (731)
.+.|.|+|++|++|+.++..+ +||||+|.+.. .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 688999999999999866432 79999999942 2
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC---CceeEEEecccccccCCceeEEEEEccCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~---~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
...+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+.....|++|...
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 457999999999999999999998653 357999999999875 36999999999999877788899999544
No 38
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.56 E-value=2.3e-14 Score=133.94 Aligned_cols=104 Identities=29% Similarity=0.421 Sum_probs=87.8
Q ss_pred eccEEEEEEEEeeCCCCCCCC-chhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e
Q 004774 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~ 91 (731)
..+.|.|+|++|++|+.++.. +. +||||++.+.. .
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 568899999999999988764 43 89999999953 4
Q ss_pred eeeeeccccCCCCCeEeeEEEEe-ecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCce-eEEEEEcc
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDII 160 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~-~~~w~~l~ 160 (731)
...+|++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||++.++|.++..+.. ...|++|.
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 56899999999999999999996 6553 357999999999987 8999999999999986544 45678884
No 39
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.55 E-value=1.9e-14 Score=134.12 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=85.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|++|+.++..+. +||||++.+.+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 56899999999999998876654 99999999954
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
....+|++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||++.|++.++. ...++|++|+..
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~ 125 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIAR 125 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHS
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhC
Confidence 34679999999999999999999987754 57999999999987 899999999998643 223445555443
No 40
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.54 E-value=2.7e-14 Score=136.91 Aligned_cols=104 Identities=27% Similarity=0.445 Sum_probs=88.3
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 57899999999999998876664 89999999953
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccc------------cCCceeE
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~------------~~~~~~~ 154 (731)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++..+ ..+....
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2467999999999999999999998764 356999999999987 89999999999853 2345678
Q ss_pred EEEEcc
Q 004774 155 RWYDII 160 (731)
Q Consensus 155 ~w~~l~ 160 (731)
.|++|.
T Consensus 141 ~W~~L~ 146 (159)
T 1tjx_A 141 QWHTLQ 146 (159)
T ss_dssp EEEECB
T ss_pred eEEECc
Confidence 899984
No 41
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-15 Score=138.87 Aligned_cols=113 Identities=27% Similarity=0.475 Sum_probs=90.5
Q ss_pred eccEEEEEEEEeeCCCCC-CCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--e
Q 004774 15 LHGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~--~ 91 (731)
..+.|.|+|++|++|+.. +..+. +...+.+||||+|.+.. .
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~------------------------------------~~~~~~~dpyv~v~l~~~~~ 67 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGS------------------------------------RQDMAHSNPYVKICLLPDQK 67 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCS------------------------------------SCTTCCCCCEEEEEEETCCS
T ss_pred CCCEEEEEEEEEeCCCCccccccc------------------------------------cccCCCCCcEEEEEEEeCCC
Confidence 467999999999999973 43321 01122489999999953 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (731)
...+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+.....|++| .+.+
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L-~~~~ 143 (147)
T 2enp_A 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL-IPSG 143 (147)
T ss_dssp SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECC-BCCC
T ss_pred cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEe-ecCC
Confidence 467999999999999999999998753 357999999999987 89999999999999877777788888 4543
No 42
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.54 E-value=5.7e-15 Score=140.69 Aligned_cols=103 Identities=27% Similarity=0.423 Sum_probs=80.7
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEE--CCe-
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQA- 91 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l--~~~- 91 (731)
..+.|.|+|++|++|+.++..+. +||||+|.+ ++.
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 57899999999999998876664 899999999 443
Q ss_pred -eeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccC
Q 004774 92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (731)
Q Consensus 92 -~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~ 161 (731)
...+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||++.|++.+ .+.....|++|+.
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 2579999999999999999999987753 56999999999987 8999999999987 2333445555543
No 43
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.54 E-value=4.5e-14 Score=136.40 Aligned_cols=91 Identities=29% Similarity=0.405 Sum_probs=80.3
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..+.|.|+|++|++|+.++..+. +||||+|.+.+
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46889999999999998876664 99999999965
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccc
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~ 147 (731)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|++.++
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 3568999999999999999999998763 457999999999987 89999999999875
No 44
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.50 E-value=1.3e-13 Score=127.25 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=89.6
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeE
Q 004774 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~-~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~ 154 (731)
+|||+++.+-+.+ .||++++ ++.||+|||.|.|++..+ ...|.|+|+|++.+. +++||++.++|.++..+....
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 8999999998766 6999998 699999999999998875 466999999999887 999999999999998777777
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEeecC
Q 004774 155 RWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (731)
Q Consensus 155 ~w~~l~~~~~~~~~~~g~L~lsl~y~p~~ 183 (731)
-+-+|++.++++. .++|.++|+|.|.+
T Consensus 116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 116 VSDTLIDDNNAII--KTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred EeecccCCCCCcc--ccEEEEEEEecCCC
Confidence 7889998888763 48999999999954
No 45
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.50 E-value=1.3e-13 Score=145.97 Aligned_cols=125 Identities=24% Similarity=0.386 Sum_probs=100.8
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--Cee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~~~ 92 (731)
..+.|.|+|++|++|+.++..+. +||||++.+. +..
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~ 55 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKK 55 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCe
Confidence 46889999999999998887665 9999999993 345
Q ss_pred eeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecc-ccccc-CCceeEEEEEccCCCCCC
Q 004774 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIA-TGELISRWYDIIAPSGSP 166 (731)
Q Consensus 93 ~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~-l~~~~-~~~~~~~w~~l~~~~~~~ 166 (731)
..+|++++++.||+|||+|.|.+... ...|.|+|||.|.++ +++||++.++ +.++. .......|++|....+ .
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~-~ 134 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS-E 134 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS-C
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccc-c
Confidence 57999999999999999999998654 347999999999987 8999999996 44443 2345667999954433 2
Q ss_pred CCCCceEEEEEEEeec
Q 004774 167 PKPGASIQLELKFTPC 182 (731)
Q Consensus 167 ~~~~g~L~lsl~y~p~ 182 (731)
....|+|.+++.|.|.
T Consensus 135 ~~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 135 KADLGELNFSLCYLPT 150 (296)
T ss_dssp CSCCCEEEEEEEEETT
T ss_pred ccccceEEEEEEeccc
Confidence 3457999999999764
No 46
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.47 E-value=1.9e-13 Score=126.87 Aligned_cols=96 Identities=19% Similarity=0.337 Sum_probs=67.9
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCC-CceeEEEecccccccCCc--eeEE
Q 004774 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR 155 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~-~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~--~~~~ 155 (731)
+||||++. .+. .+|++++ ++.||+|||+|.|.+......|.|+|||+| +. +++||++.|+|.++.... ....
T Consensus 23 ~DPYv~v~--~~~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~ 98 (131)
T 2cjt_A 23 FNTYVTLK--VQN-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 98 (131)
T ss_dssp CEEEEEEE--ETT-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred cCeEEEEE--ecC-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence 89999999 222 3555554 699999999999999988788999999999 55 899999999999986332 2224
Q ss_pred EEEcc----CCCCCC----CCCCceEEEEEEE
Q 004774 156 WYDII----APSGSP----PKPGASIQLELKF 179 (731)
Q Consensus 156 w~~l~----~~~~~~----~~~~g~L~lsl~y 179 (731)
|.++. ...|+. ....+.+.+.++|
T Consensus 99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 55542 222221 1124558888776
No 47
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.42 E-value=5.2e-14 Score=163.11 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=94.0
Q ss_pred HHHHHHHHhccc-----eEEEeccccc-ccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCC
Q 004774 564 TAYIQAIRSAQH-----FIYIENQYFL-GSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (731)
Q Consensus 564 ~ayl~~I~~Ak~-----~IyIenqYFi-p~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~ 637 (731)
..++.+|.+|++ +|+| ++||+ ++. .++.+|++| +++||+|+||++..+.-+ .
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d~-----------------~I~~AL~~A--A~rGV~VrVLvd~~a~~~--~ 407 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKDS-----------------RIIDSMIHA--AHNGKKVTVVVELQARFD--E 407 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTTC-----------------HHHHHHHHH--HHTTCEEEEEECTTCSST--T
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCcH-----------------HHHHHHHHH--HhcCCEEEEEECCCcccc--h
Confidence 467889999997 9999 99999 653 789999999 679999999999875211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCC-CCCccccCC----Cce---eeecccccccc
Q 004774 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA-PKDVLANNG----DKM---LGISFSNFFMR 709 (731)
Q Consensus 638 ~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~-lHaK~~ivD----d~~---~~vGS~Nld~R 709 (731)
. ....+++.|.++||+ +..|. .++ +|+|++||| |++ ++|||+|+|.|
T Consensus 408 ~---------------~n~~~~~~L~~aGV~------V~~~~----~~~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~r 462 (687)
T 1xdp_A 408 E---------------ANIHWAKRLTEAGVH------VIFSA----PGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEK 462 (687)
T ss_dssp T---------------TTTTTTHHHHHHTCE------EEECC----TTCEECCEEEEEEEEETTEEEEEEEEESSCSCTT
T ss_pred h---------------hHHHHHHHHHHCCCE------EEEec----CCccccceEEEEEeccCCeEEEEEEEeCCcCCcc
Confidence 0 113566789999996 32222 245 999999999 454 99999999999
Q ss_pred ccccccceeEEEecccccC
Q 004774 710 IEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 710 S~~~n~E~~~~i~~~~~~~ 728 (731)
|+.+|+|+++++.+++++.
T Consensus 463 s~~~n~D~~l~i~~~~i~~ 481 (687)
T 1xdp_A 463 TARLYTDYSLLTADARITN 481 (687)
T ss_dssp GGGTEEEEEEEECCHHHHH
T ss_pred hhhhcceEEEEEeCHHHHH
Confidence 9999999999999987653
No 48
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.41 E-value=2.3e-13 Score=137.57 Aligned_cols=120 Identities=13% Similarity=-0.057 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChh
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~ 639 (731)
....+.++.+|.+||++|+|+. |++++. .|+.+|.+| ++|||+|+||+........
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~~-----------------~I~~aL~~A--a~RGV~VRii~D~~~~~~~---- 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTSL-----------------FLADSIKRA--LQRGVIIRIISDGEMVYSK---- 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCCH-----------------HHHHHHHHH--HHHTCEEEEECCTTTTTST----
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCCH-----------------HHHHHHHHH--HHcCCeEEEEEechhhhhh----
Confidence 3455778999999999999996 887774 789999999 6799999999965432110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCC--------------------CCCccccCCCcee
Q 004774 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA--------------------PKDVLANNGDKML 699 (731)
Q Consensus 640 v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~--------------------lHaK~~ivDd~~~ 699 (731)
...+..|+.+|+. +..+. .... .|.|++++|+.++
T Consensus 113 ----------------~~~~~~~~~~~~~------~~~~~---~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v 167 (220)
T 4gel_A 113 ----------------GSQISMLAQLGVP------VRVPI---TTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIV 167 (220)
T ss_dssp ----------------TCHHHHHHHTTCC------EEECC---SSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEE
T ss_pred ----------------HHHHHHHHhcCCc------EEeec---ccccccceeEEEcchhcccccccccceeccccccceE
Confidence 1223456666764 11110 1122 5677777778999
Q ss_pred eeccccccccccccccceeEEEecccccC
Q 004774 700 GISFSNFFMRIEGSQKCCHIHIFANSFLG 728 (731)
Q Consensus 700 ~vGS~Nld~RS~~~n~E~~~~i~~~~~~~ 728 (731)
++||+|++.+|+..|.|..+++.++++++
T Consensus 168 ~~GS~N~t~~s~~~N~E~~~vi~~~~~a~ 196 (220)
T 4gel_A 168 ISGSVNWTALGLGGNWENCIITADDKLTA 196 (220)
T ss_dssp EEESCCBSHHHHHTSBEEEEEECCHHHHH
T ss_pred EecCccccccccccCceEEEEEECHHHHH
Confidence 99999999999999999999999987653
No 49
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.40 E-value=1.3e-12 Score=148.47 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=99.2
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeee
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~ 94 (731)
..|.|.|+|++|++|+++|..+. +||||+|.+++.. .
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~ 421 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-Y 421 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred CCceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-c
Confidence 45789999999999998887665 9999999998755 7
Q ss_pred eeccccCCCCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCce----eEEEEEccCCCCCCCC
Q 004774 95 RTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPK 168 (731)
Q Consensus 95 ~T~v~~~~~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~----~~~w~~l~~~~~~~~~ 168 (731)
+|++++++.||+|||+|.|.+.... ..|.|+|||+|.++ +++||++.+++.++..+.. ...|+++. . .
T Consensus 422 ~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~-~-----~ 495 (510)
T 3jzy_A 422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH-E-----V 495 (510)
T ss_dssp ECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB-S-----S
T ss_pred cCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCC-C-----C
Confidence 9999999999999999999987764 56999999999987 8999999999999986543 77899983 2 2
Q ss_pred CCceEEEEEEEe
Q 004774 169 PGASIQLELKFT 180 (731)
Q Consensus 169 ~~g~L~lsl~y~ 180 (731)
..|+|.+.+.+.
T Consensus 496 ~~G~i~l~~~l~ 507 (510)
T 3jzy_A 496 PTGEVWVRFDLQ 507 (510)
T ss_dssp SSCEEEEEEEEE
T ss_pred CCceEEEEEEEE
Confidence 468988887653
No 50
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.38 E-value=3.6e-12 Score=123.22 Aligned_cols=67 Identities=21% Similarity=0.405 Sum_probs=57.0
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccC
Q 004774 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT 149 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~~T~v~~-~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~ 149 (731)
+||||+|. .+. .+|++++ ++.||+|||+|.|.+......|.|+|||+|..+|++||++.|+|.++..
T Consensus 32 ~DPYV~v~--~~~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 32 FNTYVTLK--VQN-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp CEEEEEEE--ETT-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECCSSCCEEEEEEEEEGGGSCB
T ss_pred CCeEEEEE--ecc-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECCCCCCceEEEEEEEHHHhcc
Confidence 89999999 222 4666665 5999999999999999888889999999993349999999999999863
No 51
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.38 E-value=2.4e-12 Score=146.02 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=91.5
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCeeeee
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~~~~ 95 (731)
.|.|.|+|++|++|+. |..+. +||||+|.+++.. .|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k 428 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR 428 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence 5789999999999998 77665 9999999999865 89
Q ss_pred eccccCCCCCeEeeEEEEeec--CCCCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCCCCCCCce
Q 004774 96 TRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (731)
Q Consensus 96 T~v~~~~~~P~wne~f~~~~~--~~~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~~~~g~ 172 (731)
|+|++++.||+|||+|.|.+. .....|+|+|||+|.++ +++||++.++|. .| ..+.|++| ..|+
T Consensus 429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~ 495 (540)
T 3nsj_A 429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL---------NHGR 495 (540)
T ss_dssp CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC---------SSSE
T ss_pred eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc---------CCeE
Confidence 999999999999999999854 35678999999999987 799999999987 24 46789987 3588
Q ss_pred EEEEEEE
Q 004774 173 IQLELKF 179 (731)
Q Consensus 173 L~lsl~y 179 (731)
|++++..
T Consensus 496 l~~~~~~ 502 (540)
T 3nsj_A 496 VKFSYHA 502 (540)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8887663
No 52
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.38 E-value=2.2e-12 Score=149.38 Aligned_cols=120 Identities=24% Similarity=0.451 Sum_probs=100.7
Q ss_pred eccEEEEEEEEeeCCCCCCC--CchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC--
Q 004774 15 LHGDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~-- 90 (731)
..+.|.|+|++|++|+.++. .+ .+||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~------------------------------------------~~DPYV~V~l~g~~ 532 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNS------------------------------------------IVDPKVIVEIHGVG 532 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSS------------------------------------------CCCEEEEEEEESSG
T ss_pred cceEEEEEEEEcCCCCcccccccC------------------------------------------CCCcEEEEEEecCC
Confidence 56889999999999997663 22 389999999954
Q ss_pred --eeeeeeccccCC-CCCeEeeEEEEeecCCC-CeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCCCC
Q 004774 91 --ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (731)
Q Consensus 91 --~~~~~T~v~~~~-~~P~wne~f~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~ 165 (731)
....||++++++ .||+|||+|.|.+..+. ..|.|+|||+|.++ +++||++.|||..+..| .+|++|.+..|.
T Consensus 533 ~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~ 609 (624)
T 1djx_A 533 RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGD 609 (624)
T ss_dssp GGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSC
T ss_pred CCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcC
Confidence 345799999997 99999999999998764 67899999999986 89999999999999865 369999888776
Q ss_pred CCCCCceEEEEEEEe
Q 004774 166 PPKPGASIQLELKFT 180 (731)
Q Consensus 166 ~~~~~g~L~lsl~y~ 180 (731)
+. ..++|.+.+.|.
T Consensus 610 ~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 610 QH-PSATLFVKISIQ 623 (624)
T ss_dssp EE-EEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEE
Confidence 52 468888888875
No 53
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.36 E-value=8.8e-14 Score=156.97 Aligned_cols=128 Identities=24% Similarity=0.420 Sum_probs=26.1
Q ss_pred eeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECCee
Q 004774 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (731)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~~~ 92 (731)
....|.|+|+|++|++|+++ .||||++.+++..
T Consensus 7 ~r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~ 39 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDML 39 (483)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred ceeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeE
Confidence 45678899999999999852 3799999998876
Q ss_pred eeeeccccCC---CCCeEeeEEEEeecCCCCeEEEEEEEc-CC---C-CCceeEEEecccccccCCceeEEEEEccCCCC
Q 004774 93 VARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-DV---F-GAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (731)
Q Consensus 93 ~~~T~v~~~~---~~P~wne~f~~~~~~~~~~l~~~v~d~-~~---~-~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (731)
..||++++++ .||+|||+|.|.+.+....|.|+|||+ +. . ++++||++.|++.++..+...+.||+|.++.+
T Consensus 40 ~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~ 119 (483)
T 3bxj_A 40 YARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG 119 (483)
T ss_dssp -------------------CCEECC------------------------------------------CCEECC-------
T ss_pred EeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCC
Confidence 7899999999 999999999999766667899999994 42 3 48999999999999998888899999965543
Q ss_pred ---------------------CCCCCCceEEEEEEEeecCCCCc
Q 004774 165 ---------------------SPPKPGASIQLELKFTPCDKNPL 187 (731)
Q Consensus 165 ---------------------~~~~~~g~L~lsl~y~p~~~~p~ 187 (731)
+.....|+|+++++|.+....|.
T Consensus 120 ~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP~ 163 (483)
T 3bxj_A 120 SGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPM 163 (483)
T ss_dssp -------------------------------CEEEEEECCBCCG
T ss_pred ccccccccccccccccccccccCCCCCceEEEEEEeeeeeeccH
Confidence 11234689999999998654443
No 54
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.31 E-value=8.2e-12 Score=130.96 Aligned_cols=103 Identities=26% Similarity=0.445 Sum_probs=86.7
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--e
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~--~ 91 (731)
.+.|.|+|++|++|+.++..+. +||||++.+. + .
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 186 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL 186 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence 5789999999999998886664 8999999984 2 2
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCCC---CeEEEEEEEcCCCC-CceeEEEeccccccc------------CCceeEE
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISR 155 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~------------~~~~~~~ 155 (731)
.+.+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||++.|++..+. .+.....
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~ 266 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 266 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence 4579999999999999999999987753 46899999999987 899999999997632 3456778
Q ss_pred EEEcc
Q 004774 156 WYDII 160 (731)
Q Consensus 156 w~~l~ 160 (731)
|++|.
T Consensus 267 W~~L~ 271 (284)
T 2r83_A 267 WHTLQ 271 (284)
T ss_dssp EEECB
T ss_pred eeecC
Confidence 99884
No 55
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.30 E-value=5.4e-12 Score=147.45 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=91.5
Q ss_pred eccEEEEEEEEeeCCCC---CCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC-
Q 004774 15 LHGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~- 90 (731)
..+.|.|+|++|++|+. +|..+. +||||+|.+.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~ 53 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTT 53 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTS
T ss_pred CccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecC
Confidence 45799999999999997 555443 89999999975
Q ss_pred -eeeeeeccccCCCCCeEeeEEEEeecCC-CCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEc
Q 004774 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (731)
Q Consensus 91 -~~~~~T~v~~~~~~P~wne~f~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l 159 (731)
..+.||++++++.||+|||+|.|.+..+ ...|.|+|||+|.+++++||++.|+|.++..+.....|++|
T Consensus 54 ~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 54 PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 3567999999999999999999999874 56799999999998899999999999999988888999999
No 56
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.25 E-value=3.2e-12 Score=135.16 Aligned_cols=104 Identities=29% Similarity=0.447 Sum_probs=85.2
Q ss_pred ccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC--C--e
Q 004774 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (731)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--~--~ 91 (731)
.|.|.|+|++|++|+.++..+. +||||++.+. + .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 5889999999999999887665 8999999995 2 3
Q ss_pred eeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCC
Q 004774 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (731)
Q Consensus 92 ~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~ 162 (731)
.+.||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++..+.. ...++|+.|+..
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~ 262 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLAN 262 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSS
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhC
Confidence 457999999999999999999998775 346999999999997 8999999999987642 123455555443
No 57
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.03 E-value=3e-10 Score=126.80 Aligned_cols=135 Identities=16% Similarity=0.038 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC--CCC
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD--PKT 637 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~--~~~ 637 (731)
.....+++.+|.+||++|+|+++||.++.. +.+++.+|.+|.++++||+|+||++...+.. ..+
T Consensus 36 ~~~~~~l~~~I~~A~~~I~i~~~~~~~d~~--------------g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~ 101 (458)
T 3hsi_A 36 AEFKTQIIELIRNAKKRIYVTALYWQKDEA--------------GQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGA 101 (458)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCBCSSHH--------------HHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC--
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEEecCcH--------------HHHHHHHHHHHHhcCCCCEEEEEEECcccccccccc
Confidence 357899999999999999999999999853 3588999999866566999999999853210 101
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCcCCeEEEEe-c-c--CCCCCCCCccccCCCceeeecccccccccc
Q 004774 638 NTVQEILFWQSQTMQMMYSVVAQELREMQ--VDAHPQDYLSFYC-L-G--KREEAPKDVLANNGDKMLGISFSNFFMRIE 711 (731)
Q Consensus 638 ~~v~~~~~~~~~ti~~~~~~~~~~Ll~~G--v~~~~~~yi~~y~-~-~--~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~ 711 (731)
... .+..+++..|+++| |+ +... +|. + + ...+.+|.|++||||++++.| +|++.+.+
T Consensus 102 ~~~------------~~~~~~~~~L~~~g~nv~--v~~~--~f~~p~~~~~~~~r~H~Ki~viD~~v~~~G-~Ni~d~y~ 164 (458)
T 3hsi_A 102 EKS------------ATNADWYCEQRQTYQLPD--DPNM--FFGVPINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYL 164 (458)
T ss_dssp ---------------CCHHHHHHHHHHHHTCTT--CCCC--EEEECSSSSGGGCCEECCEEEETTEEEEES-CCBSTTTT
T ss_pred ccc------------cccHHHHHHHHhhCCCce--Eeee--ecCCccccccccCcceeeEEEECCCEEEEe-eecCHHHh
Confidence 000 01146788898888 76 2200 333 1 1 112569999999999998888 99999998
Q ss_pred ccc----cceeEEEeccc
Q 004774 712 GSQ----KCCHIHIFANS 725 (731)
Q Consensus 712 ~~n----~E~~~~i~~~~ 725 (731)
..+ +.-.++|.++.
T Consensus 165 ~~~~~~~~drd~~i~g~~ 182 (458)
T 3hsi_A 165 HQFEKYRYDRYQKITHAE 182 (458)
T ss_dssp TCSSCCEECCEEEEECHH
T ss_pred cCCcccCcchhhhhcCch
Confidence 863 33344555543
No 58
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.03 E-value=8.8e-10 Score=129.55 Aligned_cols=108 Identities=22% Similarity=0.394 Sum_probs=92.5
Q ss_pred eeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEEC---
Q 004774 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (731)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~--- 89 (731)
.+..+.|.|+|++|++|+++|..+. +||||++.+.
T Consensus 168 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~ 205 (674)
T 3pfq_A 168 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 205 (674)
T ss_dssp EECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCS
T ss_pred eeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCc
Confidence 3567889999999999999887765 9999999982
Q ss_pred -CeeeeeeccccCCCCCeEeeEEEEeecCC--CCeEEEEEEEcCCCC-CceeEEEecccccccCCceeEEEEEccCCC
Q 004774 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (731)
Q Consensus 90 -~~~~~~T~v~~~~~~P~wne~f~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~ 163 (731)
...+.+|++++++.||+|||+|.|.+... ...|.|+|||.|.++ +++||.+.+++.++... ....|+.|+...
T Consensus 206 ~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls~~ 282 (674)
T 3pfq_A 206 KSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQE 282 (674)
T ss_dssp SCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBCTT
T ss_pred cccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccC-Ccccceeecccc
Confidence 23457999999999999999999998754 356999999999998 89999999999999855 458999997653
No 59
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.96 E-value=2e-09 Score=127.80 Aligned_cols=96 Identities=23% Similarity=0.404 Sum_probs=77.8
Q ss_pred CCcEEEEEECC-----eeeeeeccccC-CCCCeEee-EEEEe-ecCC-CCeEEEEEEEcCCCCCceeEEEecccccccCC
Q 004774 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (731)
Q Consensus 80 ~d~yv~v~l~~-----~~~~~T~v~~~-~~~P~wne-~f~~~-~~~~-~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~ 150 (731)
+||||+|.+.+ ..+.+|+++++ +.||+||| +|.|. +..+ ...|+|+|||+| +++||++.|||..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999954 23469999986 69999999 69998 6544 457899999987 89999999999999866
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEeec
Q 004774 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~ 182 (731)
-++++|.+..|.+ -..++|.+.+.+...
T Consensus 819 ---yR~vpL~~~~g~~-l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 819 ---YHYVCLRNEANQP-LCLPALLIYTEASDY 846 (885)
T ss_dssp ---EEEEEEECTTSCE-EEEEEEEEEEEEEEC
T ss_pred ---ceEEEecCCCCCc-cCceEEEEEEEEEec
Confidence 3578998877754 246888888888763
No 60
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.95 E-value=2.8e-09 Score=125.90 Aligned_cols=114 Identities=24% Similarity=0.401 Sum_probs=92.1
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..++|.|+|++|++|+.+ . +||||+|.+.+
T Consensus 648 ~~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 681 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTD 681 (816)
T ss_dssp CCEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGG
T ss_pred cceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCcc
Confidence 357899999999999742 1 89999999954
Q ss_pred e--eeeeeccccC-CCCCeEeeE-EEEe-ecCCC-CeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCC
Q 004774 91 A--TVARTRVLKN-SQEPVWNEH-FNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (731)
Q Consensus 91 ~--~~~~T~v~~~-~~~P~wne~-f~~~-~~~~~-~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (731)
. ...||+++++ +.||+|||+ |.|. +..+. ..|+|+|||++ +++||++++||..+..| -++++|.+..|
T Consensus 682 ~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g 755 (816)
T 3qr0_A 682 TVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPG---YRHVPLRNESN 755 (816)
T ss_dssp CEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCE---EEEEEEECTTS
T ss_pred cccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCC
Confidence 1 4579999886 699999998 9998 76553 57899999985 79999999999999876 36899988877
Q ss_pred CCCCCCceEEEEEEEee
Q 004774 165 SPPKPGASIQLELKFTP 181 (731)
Q Consensus 165 ~~~~~~g~L~lsl~y~p 181 (731)
.+. ..++|.+.+.+..
T Consensus 756 ~~~-~~atLfv~i~~~~ 771 (816)
T 3qr0_A 756 RPL-GLASVFAHIVAKD 771 (816)
T ss_dssp CEE-EEEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEEe
Confidence 652 3478888887665
No 61
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.92 E-value=3.2e-09 Score=125.90 Aligned_cols=113 Identities=21% Similarity=0.367 Sum_probs=90.1
Q ss_pred eccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEEECC----
Q 004774 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (731)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~l~~---- 90 (731)
..++|.|+|++|++|+.. . +||||+|.+.+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 467899999999999841 2 89999999943
Q ss_pred -eeeeeec-cccC-CCCCeEee-EEEE-eecCCC-CeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCC
Q 004774 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (731)
Q Consensus 91 -~~~~~T~-v~~~-~~~P~wne-~f~~-~~~~~~-~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~ 164 (731)
..+.||+ ++++ +.||+||| +|.| .+..+. ..|.|+|||++ +++||++.|||..+..| .+|++|.+..|
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSG---YHHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCC---cEEEeccCCCC
Confidence 2357999 7765 69999999 6999 776553 57899999987 89999999999999865 46899987776
Q ss_pred CCCCCCceEEEEEEEe
Q 004774 165 SPPKPGASIQLELKFT 180 (731)
Q Consensus 165 ~~~~~~g~L~lsl~y~ 180 (731)
.+. ..++|.+.+.+.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 543 357788877764
No 62
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.84 E-value=4.4e-08 Score=87.86 Aligned_cols=89 Identities=16% Similarity=0.352 Sum_probs=74.3
Q ss_pred CCcEEEEEECCeeee---ee-ccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEeccccccc-----CC
Q 004774 80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (731)
Q Consensus 80 ~d~yv~v~l~~~~~~---~T-~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~-----~~ 150 (731)
.||||.|.++..... +| ..+++|..|+|||.|.-.+.+ ...|.|.|+.... ++++.++|++.+|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 899999999874433 77 666779999999999988755 5589999997655 99999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 004774 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (731)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~ 180 (731)
...+-|++| ++.|.|++.++|.
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 567889999 4579999999986
No 63
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.83 E-value=6.2e-09 Score=118.16 Aligned_cols=132 Identities=9% Similarity=-0.003 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHhccceEEEecccc-cccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCC--cEEEEEecCCCCCCCC
Q 004774 560 KSIQTAYIQAIRSAQHFIYIENQYF-LGSSYAWPSYKNAGADNLIPMELALKIASKIRANER--FAVYVIIPMWPEGDPK 636 (731)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IyIenqYF-ip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~g--v~V~IvlP~~~~g~~~ 636 (731)
..+..+++.+|.+||++|+|+.-+| -++. ++..+..+|.+| ++|| |+|+||+...+.+..
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~--------------~g~~i~~aL~~a--a~rGp~V~Vril~D~~g~~~~- 127 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA--------------FQDAIVAGLKES--AAKGNKLKVRILVGAAPVYHM- 127 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH--------------HHHHHHHHHHHH--HHTTCCEEEEEEEECCC--CC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh--------------HHHHHHHHHHHH--HhCCCCcEEEEEEeCcccccc-
Confidence 5688999999999999999998763 4432 235788899888 5688 999999987432110
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEe--cc---CCCCCCCCccccCCCceeeeccccc-cccc
Q 004774 637 TNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC--LG---KREEAPKDVLANNGDKMLGISFSNF-FMRI 710 (731)
Q Consensus 637 ~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~--~~---~~~~~lHaK~~ivDd~~~~vGS~Nl-d~RS 710 (731)
... ...+++.|.++|++ ...++.+.. .. ..-...|.|++|||++++++||+|+ +.+.
T Consensus 128 -~~~--------------~~~~~~~L~~~g~~--~~~~~~~~~~~~~~~~~~~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y 190 (506)
T 1v0w_A 128 -NVI--------------PSKYRDELTAKLGK--AAENITLNVASMTTSKTAFSWNHSKILVVDGQSALTGGINSWKDDY 190 (506)
T ss_dssp -CCH--------------HHHHHHHHHHHHGG--GGGGEEEEEEEECSBTTTTBCBCCCEEEETTTEEEEESCCCCHHHH
T ss_pred -ccC--------------CHHHHHHHHhcccc--eeecCccccccccccCCccccceeeEEEECCcEEEeeccccCcccc
Confidence 011 13556778887774 222333221 11 1123689999999999999999998 7665
Q ss_pred cccc---cceeEEEeccc
Q 004774 711 EGSQ---KCCHIHIFANS 725 (731)
Q Consensus 711 ~~~n---~E~~~~i~~~~ 725 (731)
+..+ .++++.+.++.
T Consensus 191 ~~~~~~~~D~~v~i~G~~ 208 (506)
T 1v0w_A 191 LDTTHPVSDVDLALTGPA 208 (506)
T ss_dssp TSSSSCCBEEEEEEESHH
T ss_pred ccCCCCceEEEEEEECHH
Confidence 5544 78899888764
No 64
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.80 E-value=3.1e-08 Score=89.95 Aligned_cols=91 Identities=19% Similarity=0.394 Sum_probs=75.9
Q ss_pred CCcEEEEEECCeee---eee-ccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEeccccccc-----CC
Q 004774 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (731)
Q Consensus 80 ~d~yv~v~l~~~~~---~~T-~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~-----~~ 150 (731)
.||||.|.++.... ++| ..+++|..|+|||.|.-.+.+ ...|.|.|+.... ++++.++|++.+|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999987544 788 677779999999999988655 5589999996544 89999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEeec
Q 004774 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (731)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p~ 182 (731)
...+-|++| ++.|.|++.++|.-.
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~e 131 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFLE 131 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECCC
T ss_pred CceEEEEec--------ccCcEEEEEEEEEEe
Confidence 567889999 458999999999743
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.53 E-value=1.2e-07 Score=109.28 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccc-----eEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCC
Q 004774 563 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (731)
Q Consensus 563 ~~ayl~~I~~Ak~-----~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~ 637 (731)
...++..|++|++ +|.| +.|.++... .++.+|++| +++|++|+||+-..+-.+-..
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~-tlYr~~~ds----------------~Iv~ALi~A--A~rGv~V~vLvel~arfdee~ 414 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRL-TQYRVAENS----------------SIISALEAA--AQSGKKVSVFVELKARFDEEN 414 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEE-EESCCCSCC----------------HHHHHHHHH--HHTTCEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEE-EEEEEcCCH----------------HHHHHHHHH--HHCCCEEEEEEeCCCCcchhh
Confidence 4688999999999 9996 488887532 889999999 779999999998654211100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCc---------eeeeccccccc
Q 004774 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDK---------MLGISFSNFFM 708 (731)
Q Consensus 638 ~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~---------~~~vGS~Nld~ 708 (731)
. ..+.+.|.++||+ .+|++. ....|+|+++||++ |+.+||.|++.
T Consensus 415 n-----------------i~wa~~Le~aGv~-------Vv~g~~--~lk~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~ 468 (705)
T 2o8r_A 415 N-----------------LRLSERMRRSGIR-------IVYSMP--GLKVHAKTALILYHTPAGERPQGIALLSTGNFNE 468 (705)
T ss_dssp C-----------------HHHHHHHHHHTCE-------EEECCT--TCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSC
T ss_pred h-----------------HHHHHHHHHCCCE-------EEEccC--CCCceeEEEEEecccccCCceeEEEeccccceee
Confidence 1 2456789999996 245442 34589999999988 68999999999
Q ss_pred cccccccceeEEEeccccc
Q 004774 709 RIEGSQKCCHIHIFANSFL 727 (731)
Q Consensus 709 RS~~~n~E~~~~i~~~~~~ 727 (731)
.++.+.++++++..+++.+
T Consensus 469 ~tariy~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 469 TTARIYSDTTLMTANTDIV 487 (705)
T ss_dssp CCSSCEEEEEEEECCHHHH
T ss_pred eEEEEEeeeeeeecChHHH
Confidence 9999999999999988764
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=97.75 E-value=3.9e-06 Score=90.07 Aligned_cols=110 Identities=9% Similarity=-0.050 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCh
Q 004774 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (731)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~ 638 (731)
...|.+....+|.+|++.||+..|+..- ..+...|.+| .+|||+|++|+|..++. .
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~l------------------~~l~~~L~~a--~~RGV~Vrvi~~~~~d~----a 172 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEFF------------------ETIREDLIKT--LERGVTVSLYIDKIPDL----S 172 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHHH------------------HHHHHHHHHH--HHTTCEEEEEESSCCCC----G
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHHH------------------HHHHHHHHHH--HhCCCEEEEEECCCCCh----h
Confidence 3679999999999999999999876432 2556677777 56999999999876531 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccc----cccccccc
Q 004774 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNF----FMRIEGSQ 714 (731)
Q Consensus 639 ~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nl----d~RS~~~n 714 (731)
. | .+. ....+++ + .+ ..-.++|+|+++++||+.|+ ++||+..|
T Consensus 173 ~------~----------~~~--~~~~~vR--------~-----~~--~~p~l~ivD~~~alv~~~~~~~~~~~rS~~~~ 219 (342)
T 3qph_A 173 E------F----------KGK--GNFFVRQ--------F-----YK--LNHLIGMTDGKEVVTIQNATFDSIGPPSFKST 219 (342)
T ss_dssp G------G----------SSS--SEEEEEE--------C-----SC--CCSEEEEETTTEEEEECSSSCCSSCCCEEEEC
T ss_pred h------h----------hcc--ccceEEE--------E-----cC--CCcEEEEEECCEEEEecccccccccccccccc
Confidence 0 0 110 1122221 1 11 33447999999999999998 45999999
Q ss_pred cceeEEEecccc
Q 004774 715 KCCHIHIFANSF 726 (731)
Q Consensus 715 ~E~~~~i~~~~~ 726 (731)
+| .++|.++.|
T Consensus 220 ~e-aliv~~~~l 230 (342)
T 3qph_A 220 YP-EIIFSQYSL 230 (342)
T ss_dssp CH-HHHHHHHHH
T ss_pred cc-EEEEECHHH
Confidence 99 888877765
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=95.73 E-value=0.009 Score=63.82 Aligned_cols=51 Identities=25% Similarity=0.191 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~ 309 (731)
+.....+.+.|.+|+++|++..|- .. ...+.+.|.++++|||+|++++ .+.
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~---~~--------------l~~l~~~L~~a~~RGV~Vrvi~-~~~ 168 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPS---EF--------------FETIREDLIKTLERGVTVSLYI-DKI 168 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECH---HH--------------HHHHHHHHHHHHHTTCEEEEEE-SSC
T ss_pred HHHHHHHHHHHHhhheEEEEEeCH---HH--------------HHHHHHHHHHHHhCCCEEEEEE-CCC
Confidence 468999999999999999998652 10 1468899999999999999996 443
No 68
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=95.05 E-value=0.054 Score=53.70 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCC
Q 004774 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (731)
Q Consensus 606 ~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~ 685 (731)
++...+.+. ..+|++|.+|+-+..+....+ ....++|+..||+ ..+++ +..
T Consensus 52 rfy~~f~~h--~~~Ggkv~~IlGgstsQrlTS------------------KQavEElL~cGve------v~IiN---rkR 102 (358)
T 2c1l_A 52 RFYETFTEH--INQGGRVIAILGGSTSQRLSS------------------RQVVEELLNRGVE------VHIIN---RKR 102 (358)
T ss_dssp TTHHHHHHH--HHTTCEEEEEEECCSSSCCBB------------------HHHHHHHHHTTCE------EEEEE---CSS
T ss_pred eecHHHHHH--HhcCCcEEEEEcccccccccH------------------HHHHHHHHhcCCc------eEEee---eee
Confidence 556666666 348999999998654432222 2345789999997 33443 457
Q ss_pred CCCCcccc---CCCceeeeccccccccccccccceeEEEecc
Q 004774 686 APKDVLAN---NGDKMLGISFSNFFMRIEGSQKCCHIHIFAN 724 (731)
Q Consensus 686 ~lHaK~~i---vDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~ 724 (731)
.+|+|+.. -|..-++|||.||--=-|.-|-||.++++++
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQNvE~sllld~~ 144 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMSQNIEASLLLDNN 144 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTTTSBEEEEEECHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccccceeEEEEEcCC
Confidence 89999865 5888999999999999999999999999875
No 69
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=94.45 E-value=0.038 Score=55.58 Aligned_cols=51 Identities=24% Similarity=0.098 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCC
Q 004774 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDD 308 (731)
Q Consensus 241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~ 308 (731)
+...+.+.+.|++|+++|++..|. +. ..+|.+.|.+|++|||.|+|+++..
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~----------e~-------l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS----------EF-------FETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG----------GG-------HHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH----------HH-------HHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 468899999999999999997662 11 2689999999999999999999543
No 70
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=82.59 E-value=10 Score=37.27 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=33.5
Q ss_pred eeeeeeccccCCCCCeEeeEEEEeecCC---CCeEEEEEEEcCC
Q 004774 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131 (731)
Q Consensus 91 ~~~~~T~v~~~~~~P~wne~f~~~~~~~---~~~l~~~v~d~~~ 131 (731)
...++|.|...+.+|.|+|++.+.++.. ...|.|+++....
T Consensus 76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 3457899999999999999999999886 3568899887644
No 71
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=82.23 E-value=1.8 Score=43.18 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 004774 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (731)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~ 630 (731)
...|.+-...+|++|++.|++. +|... ...|...|.+| .+|||.|.|++...
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~ls----i~~e~--------------l~~l~~~L~~A--~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVV----TPSEF--------------FETIREDLIKT--LERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEE----ECGGG--------------HHHHHHHHHHH--HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHhhhEEEEE----eCHHH--------------HHHHHHHHHHH--HHCCCEEEEEEcCC
Confidence 3678889999999999999994 34332 14678888888 67999999999864
No 72
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=80.76 E-value=14 Score=34.25 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=70.1
Q ss_pred CCcEEEEEEC--CeeeeeeccccCCCCCeEeeEEEEeecCC--------CCeEEEEEEEcCCCCCceeEEEeccccccc-
Q 004774 80 SDPYVTVVVP--QATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIA- 148 (731)
Q Consensus 80 ~d~yv~v~l~--~~~~~~T~v~~~~~~P~wne~f~~~~~~~--------~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~- 148 (731)
.+|..-+.++ .-..+.|.+.. ..+|.+|-+-++.+... ...+.++|.......-..+|.+.|+|.++.
T Consensus 40 ~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe 118 (156)
T 2yrb_A 40 KEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILE 118 (156)
T ss_dssp SCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHH
T ss_pred cCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhC
Confidence 3565555553 34445676666 88999999888888654 246788888764433589999999999987
Q ss_pred CCceeEEEEEccCCCCCCCCCCceEEEEEEEee
Q 004774 149 TGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (731)
Q Consensus 149 ~~~~~~~w~~l~~~~~~~~~~~g~L~lsl~y~p 181 (731)
..+.+..-.+|....+.. ..-|.|.+.|+...
T Consensus 119 ~~~~i~g~~~L~g~~g~~-~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 119 KSGRIFCTASLIGTKGDI-PNFGTVEYWFRLRV 150 (156)
T ss_dssp CCSCEEEEEEECBSSSCC-TTSEEEEEEEEEEE
T ss_pred cCCceEEEEEEEcCCCCc-ceEEEEEEEEEEec
Confidence 344466677887665532 35799999998764
No 73
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=74.74 E-value=14 Score=44.38 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCcEEEEEE--CCe---eeeeeccccCCCCCeEeeEEEEeecC----CCCeEEEEEEEcC
Q 004774 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDD 130 (731)
Q Consensus 80 ~d~yv~v~l--~~~---~~~~T~v~~~~~~P~wne~f~~~~~~----~~~~l~~~v~d~~ 130 (731)
.+.||++.+ ++. ....|..+.-..+|.|||...|++.- ..+.|.|+||+..
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence 678888877 442 22345444447789999999988553 2567899999853
No 74
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=67.83 E-value=22 Score=43.13 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCcEEEEEE--CC---eeeeeeccccCCCCCeEeeEEEEeecC----CCCeEEEEEEEcCCCC-----CceeEEEecccc
Q 004774 80 SDPYVTVVV--PQ---ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (731)
Q Consensus 80 ~d~yv~v~l--~~---~~~~~T~v~~~~~~P~wne~f~~~~~~----~~~~l~~~v~d~~~~~-----~~~iG~~~i~l~ 145 (731)
.+.||++.+ ++ +...+|+.+ ...+|.|||..+|++.- ..+.|-|+||+....+ ...+|.+.++|.
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 678898887 33 222234333 35678899999988643 3567899999765421 346777777765
Q ss_pred ccc
Q 004774 146 TIA 148 (731)
Q Consensus 146 ~~~ 148 (731)
+..
T Consensus 454 d~~ 456 (1091)
T 3hhm_A 454 DYT 456 (1091)
T ss_dssp CTT
T ss_pred ccC
Confidence 543
No 75
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=62.02 E-value=3.1 Score=46.64 Aligned_cols=40 Identities=3% Similarity=-0.133 Sum_probs=29.9
Q ss_pred CCCCCCCccccC---------C---C----ceeeeccccccccc------cccccceeEEEe
Q 004774 683 REEAPKDVLANN---------G---D----KMLGISFSNFFMRI------EGSQKCCHIHIF 722 (731)
Q Consensus 683 ~~~~lHaK~~iv---------D---d----~~~~vGS~Nld~RS------~~~n~E~~~~i~ 722 (731)
...+.|.|+++- | | .|+++||+||..=. .--|||++|+|-
T Consensus 427 ~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~P 488 (544)
T 1q32_A 427 GTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYH 488 (544)
T ss_dssp TTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEE
T ss_pred CCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEec
Confidence 457799999872 3 1 58999999996433 334899999994
No 76
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=47.53 E-value=76 Score=38.09 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=33.6
Q ss_pred CCcEEEEEE--CCeee--eeeccccCCCCCeEeeEEEEeecC----CCCeEEEEEEEc
Q 004774 80 SDPYVTVVV--PQATV--ARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDD 129 (731)
Q Consensus 80 ~d~yv~v~l--~~~~~--~~T~v~~~~~~P~wne~f~~~~~~----~~~~l~~~v~d~ 129 (731)
.+.||++.+ ++... .+|.-+.-+.+|.|||.+.|++.- ..+.|.|+||+.
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 295 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCG 295 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEec
Confidence 578888776 44222 244444446789999998887543 256788999874
No 77
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=45.02 E-value=20 Score=43.58 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeEeeEEEEeecCC----CCeEEEEEEEc
Q 004774 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (731)
Q Consensus 80 ~d~yv~v~l--~~~~---~~~T~v~~~~~~P~wne~f~~~~~~~----~~~l~~~v~d~ 129 (731)
.+.||++.+ ++.. ...|..+.-+.+|.|||...|++.-. .+.|.|+||+.
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 566776555 4422 22454444477899999988886543 46688999875
No 78
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=36.03 E-value=15 Score=40.44 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=33.2
Q ss_pred cCCCceEEecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCC
Q 004774 335 KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (731)
Q Consensus 335 ~~~gV~v~~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~ 400 (731)
..+||.+... +.|. ...+||-|++|.=.+ +..-.+|-..|+...-|..
T Consensus 100 ~~~nv~~~~p-~mp~------------~fGthHsKmmiL~y~-----~glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 100 PYENISLCQA-KLDI------------AFGTHHTKMMLLLYE-----EGLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp TCTTEEEEEC-CCCS------------TTCCBCCCEEEEEES-----SCEEEEEECCCBSGGGGTS
T ss_pred cCCCeEEEeC-CCCC------------cccccchhhheeecC-----CceEEEEeCCCCChhHhcc
Confidence 3578887643 3332 246999999998654 2247788888998877754
No 79
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=35.09 E-value=21 Score=39.17 Aligned_cols=43 Identities=2% Similarity=-0.149 Sum_probs=31.5
Q ss_pred CCCCCcccc-C---------------CCceeeecccccccc------ccccccceeEEEeccccc
Q 004774 685 EAPKDVLAN-N---------------GDKMLGISFSNFFMR------IEGSQKCCHIHIFANSFL 727 (731)
Q Consensus 685 ~~lHaK~~i-v---------------Dd~~~~vGS~Nld~R------S~~~n~E~~~~i~~~~~~ 727 (731)
.+-|.|+.+ + .=.|+++||+||.-= ..--|||++|++....|.
T Consensus 352 a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k~irsYElGVL~~p~~~~ 416 (470)
T 3sq7_A 352 TPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYHSRRLA 416 (470)
T ss_dssp CCBCCEEEEEEEC--------CCTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEEGGGSS
T ss_pred cCCceEEEEEecccccccccccCCCceeeEEEEecccCCHHHhhhhccCCcceeeeEEEcccccc
Confidence 457999998 1 125999999999621 233479999999887663
No 80
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.12 E-value=90 Score=26.29 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=45.7
Q ss_pred CCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHh----cccEEEEEEEEeeccceeeeccCCCCCCCCC
Q 004774 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISE----AHHLIYIVGWSVFHKIKLIREQTRPLPRGGD 284 (731)
Q Consensus 209 ~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~----Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~ 284 (731)
..+..++++.|| +..++.|-+- +..-.+++.|+.+ ..++..++-| |+-++.++..
T Consensus 5 ~~~mel~Vwv~g--------~er~VsGvT~--~TTC~DVV~aL~~~~G~~~~y~LvE~w---------Rg~ER~L~~~-- 63 (95)
T 2cs4_A 5 SSGMELKVWVDG--------VQRIVCGVTE--VTTCQEVVIALAQAIGRTGRYTLIEKW---------RDTERHLAPH-- 63 (95)
T ss_dssp SCCBCCCEEETT--------EEECCSSBCS--SSCHHHHHHHHHHHHSCCSEEEEEEEE---------TTEEEECCSS--
T ss_pred CCCCEEEEEECC--------ceeEEECCCC--CCcHHHHHHHHHhccCCCccEEEEEec---------CCCeecCCCc--
Confidence 345667778877 2334444432 2344445554433 4577777777 5555555544
Q ss_pred CcHHHHHHHHhhcCCEEEEEE
Q 004774 285 LTLGELLKYKSEEGVRVLLLV 305 (731)
Q Consensus 285 ~~l~~~L~~aA~rGVkVriLv 305 (731)
.++.++|.+=.++.=+|++.+
T Consensus 64 ~r~l~~l~~wG~~~~eV~F~L 84 (95)
T 2cs4_A 64 ENPIISLNKWGQYASDVQLIL 84 (95)
T ss_dssp SCHHHHHHTTGGGSTTCEEEE
T ss_pred ccHHHHHHHhCcCCCceEEEE
Confidence 899999888666666666655
No 81
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=24.66 E-value=50 Score=30.72 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=28.7
Q ss_pred hccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcC-CCcEEEEEecCCC
Q 004774 572 SAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRAN-ERFAVYVIIPMWP 631 (731)
Q Consensus 572 ~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~-~gv~V~IvlP~~~ 631 (731)
+|-..||+..|+|.+.+ .....++.+++++. .|+ .+..|...
T Consensus 2 ~~M~kIYLAGP~Fs~~q----------------~~~~~~l~~~L~~~~~g~--~v~~P~~~ 44 (162)
T 3ehd_A 2 NAMTKIYFAGPLFSQAD----------------LRYNAYLVEQIRQLDKTI--DLYLPQEN 44 (162)
T ss_dssp --CEEEEEESCCSSHHH----------------HHHHHHHHHHHHTTCTTE--EEECGGGG
T ss_pred CCccEEEEECCCCCHHH----------------HHHHHHHHHHHHhcCCCC--EEECCCcc
Confidence 56778999999998874 24556677777643 575 46888654
No 82
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=24.65 E-value=1.9e+02 Score=28.81 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhcCCCceEEecccCCCCccccccccccccc
Q 004774 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (731)
Q Consensus 284 ~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~~~~~~ 363 (731)
+.+|.....+..++|++|.+++ -...+... . +++..+.+..-||++.+.++-.
T Consensus 50 gvrfy~~f~~h~~~Ggkv~~Il-GgstsQrl-------T----SKQavEElL~cGvev~IiNrkR--------------- 102 (358)
T 2c1l_A 50 GVRFYETFTEHINQGGRVIAIL-GGSTSQRL-------S----SRQVVEELLNRGVEVHIINRKR--------------- 102 (358)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEE-ECCSSSCC-------B----BHHHHHHHHHTTCEEEEEECSS---------------
T ss_pred ceeecHHHHHHHhcCCcEEEEE-cccccccc-------c----HHHHHHHHHhcCCceEEeeeee---------------
Confidence 3899999999999999999997 43322211 1 3667777788899998653211
Q ss_pred ccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (731)
Q Consensus 364 ~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~ 396 (731)
-.|-|+...-.. ..-.-+||.-|+.-.
T Consensus 103 -i~HaK~Yg~~~n-----~g~~LIV~SgNfT~p 129 (358)
T 2c1l_A 103 -ILHAKLYGTSNN-----LGESLVVSSGNFTGP 129 (358)
T ss_dssp -CBCCEEEEEEET-----TEEEEEEESCCBSTT
T ss_pred -ecchhhhcccCC-----CceEEEEecCCcccc
Confidence 129999887543 112667888888763
No 83
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=23.94 E-value=1.1e+02 Score=30.54 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=59.2
Q ss_pred HHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCChhHHHHHHHHH
Q 004774 569 AIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQS 648 (731)
Q Consensus 569 ~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~~~~v~~~~~~~~ 648 (731)
-+...-..|.|+.||---.-. +.|++ ++.+.++.. ...-..|.++|-.-. +. ...+ |.
T Consensus 118 yl~~~~~~i~i~DPYir~~hQ---------~~Nl~--~f~E~~vk~--~~~~~~i~L~T~~d~-~~---~~~~-----q~ 175 (257)
T 2ymb_A 118 YLNETVTEVWIEDPYIRHTHQ---------LYNFL--RFCEMLIKR--PCKVKTIHLLTSLDE-GI---EQVQ-----QS 175 (257)
T ss_dssp TCSTTCCEEEEECSCCCSHHH---------HHHHH--HHHHHHTC----CCCCEEEEEECCCS-ST---THHH-----HH
T ss_pred HHhcCCeEEEEeCceecchHH---------HHHHH--HHHHHHhhc--cCccceEEEEecCCC-cc---cHHH-----HH
Confidence 343344789999999875421 12332 223333222 345668888885321 11 1111 11
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCCCCCCCccccCCCce-----------------eeecccccccccc
Q 004774 649 QTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKM-----------------LGISFSNFFMRIE 711 (731)
Q Consensus 649 ~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~-----------------~~vGS~Nld~RS~ 711 (731)
.....+.+.|...||. +. +.. ...+|..-++.|.-| ..+|..++|.|--
T Consensus 176 ----~~l~~ik~sl~~~gi~------~~-~~~---~~tiHDR~I~~dnGW~IkigRGLD~fq~~~~~f~lg~~d~~lR~C 241 (257)
T 2ymb_A 176 ----RGLQEIEESLRSHGVL------LE-VQY---SSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPC 241 (257)
T ss_dssp ----HHHHHHHHHHHHHTCE------EE-EEE---CTTCCCCEEEETTSEEEEESSTTCCBCCCSSTTCTTSSCTTSSCB
T ss_pred ----HHHHHHHHHHHhCCCE------EE-EEE---CCCccceeEEecCCcEEEecCccccccCCCCcccccccccccCcc
Confidence 1235667788888985 21 122 245898888888655 4577788887753
No 84
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.38 E-value=91 Score=26.66 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=32.4
Q ss_pred CcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCChHHHHhhhcCCCceEEe
Q 004774 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (731)
Q Consensus 285 ~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 343 (731)
.-+.+.+.+|-+|||.|.+. |+.-..-. -.+....++..|+.++.
T Consensus 90 ewikdfieeakergvevfvv-ynnkdddr-------------rkeaqqefrsdgvdvrt 134 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVV-YNNKDDDR-------------RKEAQQEFRSDGVDVRT 134 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EECSCHHH-------------HHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEE-ecCCCchh-------------HHHHHHHhhhcCceeee
Confidence 56888999999999999998 66642110 12345567889999883
Done!