BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004775
(731 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis
GN=nsun2 PE=2 SV=1
Length = 798
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 264/747 (35%), Positives = 393/747 (52%), Gaps = 115/747 (15%)
Query: 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNI 60
K LQ ++ ++E +PL WYP LAWH+N SR +RK+ LE+FH+FL E E GNI
Sbjct: 101 FKELQDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFHQFLVNETESGNI 160
Query: 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120
+RQEAVSM+PP+ L VQP H +LDMCAAPGSKT Q++E++H N P G VIAND+D
Sbjct: 161 SRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEMLHADMN-VPFPEGFVIANDVD 219
Query: 121 VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 180
+RC LL+HQ KR+ + ++V NH+A P N S L +DR+
Sbjct: 220 NKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREV------------LYYDRI 267
Query: 181 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240
LCDVPCSGDGTLRK D+W+KW LH LQ++IA RG+ L GGR+VYSTCS+NP
Sbjct: 268 LCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNP 327
Query: 241 VENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRR 299
VE+EAV+A +L K EGS+EL DV++E+P L PG+ +WKV K G W + + R
Sbjct: 328 VEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTSRH 387
Query: 300 IGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLER 359
I P+MFP PK EE++ + L R
Sbjct: 388 TQIRPTMFP------------PKD-------------------------EEKLKSMNLNR 410
Query: 360 CMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGM 419
CMR++PH QN+G FF+AVL K +P+P N + L R PP
Sbjct: 411 CMRILPHHQNTGGFFVAVLIKKAPMP-----WNKRQPKLQRR--PP-------------- 449
Query: 420 EVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEV-PVNTETKSERTG 478
V D + PE L +N G A EP VD+E E P ++ S +T
Sbjct: 450 -VSACDASIAVAPE--LVKAVTENSAGMADEP------AVDTENGETKPCTNQSDSSKTD 500
Query: 479 ------GKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTN 531
+K+++ G + DP +F + D+ I + I+TFY +D SF L++R +
Sbjct: 501 IVCCPPPSKKMKLFGFKE--DPFVFVSEDDPIFDPIQTFYALDPSFP-KKNLLTRTQEGK 557
Query: 532 RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPV 591
+ +++Y VSK +++ L N +++K+ + G+K+ R + +G C++R++ EG+
Sbjct: 558 K-RQLYMVSKELRNVLLHN---SEKMKVINTGIKVLCR--NNDGEQYGCAYRLAQEGIYT 611
Query: 592 ILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS---KGGE 648
+ P+I +I+ S+ D K LL + + F E ++A+ MG V+ + E
Sbjct: 612 LYPFINARIVTVSIEDIKVLLTQENPFLSKF-SKETQKQANNFDMGSIVLKYEPDPQEPE 670
Query: 649 ALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGDL-----VQEN 703
L P I + W+G+ S+ V + L + + + EK ++ V+
Sbjct: 671 TLQCP-------IVLCGWRGKTSIRSFVPKNERLHYLRMMGVEVFKEKAEVLEKKPVEGK 723
Query: 704 ALGTDEVQEEMNDNGKEEPESLEVAVN 730
A + + E+M+ +G +E ES E++ N
Sbjct: 724 ACDEEHIDEKMDIDGAKE-ESKELSGN 749
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
GN=NSUN2 PE=2 SV=1
Length = 796
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/680 (35%), Positives = 367/680 (53%), Gaps = 96/680 (14%)
Query: 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNI 60
+ LQ ++ +VE + L WYP LAWH+N SR LRK+ LERFH+FL E E GNI
Sbjct: 99 FRELQHLEVDGQKVEMPQALSWYPEELAWHTNLSRKILRKSPQLERFHQFLVSETECGNI 158
Query: 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120
+RQEAVSM+PPL L+V PDH +LDMCAAPGSKT QL+E++H N P G VIAND+D
Sbjct: 159 SRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADMN-VPFPKGFVIANDVD 217
Query: 121 VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 180
+RC LL+HQ KR+ + ++V NH+A P + ++ + L +DR+
Sbjct: 218 NKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQ------------VDVDGRKETLFYDRI 265
Query: 181 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240
LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG+ L GGR+VYSTCS+NP
Sbjct: 266 LCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNP 325
Query: 241 VENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRR 299
+ENEAV+A +L K +G++EL DVS+E+P L PG+ KWKV K G W K V R+
Sbjct: 326 IENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPSNRQ 385
Query: 300 IGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLER 359
I P+MFP EE++ + LER
Sbjct: 386 TQIRPTMFPIKE-------------------------------------EEKLKAMNLER 408
Query: 360 CMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGM 419
C+R++PH QN+G FF+AVL K SP+P ++ +K+ P K ++ + N
Sbjct: 409 CIRILPHHQNTGGFFVAVLIKKSPMPWNKRQPKVHQKL-------PGKTEDTEVTATNA- 460
Query: 420 EVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTG- 478
DG+++ + +L A + +P +++ + +TE ++K G
Sbjct: 461 ----GDGSEDATEKPTL-----------AEDEEPKKVQELQNSDTE-----QSKKGVCGP 500
Query: 479 -GKRKLQIQGKWKGIDPVIFF-NDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRI 536
+K+++ G + DP +F D+ + I+ FY +D SF L++R + + +++
Sbjct: 501 PPSKKMKLFGFKE--DPFVFLPEDDPLFLPIQKFYALDPSFP-KMNLLTRTQEGKK-RQL 556
Query: 537 YYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYI 596
Y VSK +++ L N +++K+ + G+K++ R + +G C+FR++ EG+ + P+I
Sbjct: 557 YMVSKELRNVLLNN---SEKMKVINTGIKVWSRNS--DGEQFGCAFRLAQEGIYTLYPFI 611
Query: 597 TKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQI 656
+I+ + D K LL + + F +E K + MG V+ E P +
Sbjct: 612 HARIVNVCIEDVKILLTQENPFLSKF-SSETQRKVKDMAMGSIVLKYEPDPE---KPDDL 667
Query: 657 DASTIAIGCWKGRASLSVMV 676
+ G W+G+ SL V
Sbjct: 668 QCPIVLCG-WQGKTSLRAFV 686
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2
PE=1 SV=2
Length = 767
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/716 (35%), Positives = 378/716 (52%), Gaps = 101/716 (14%)
Query: 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNI 60
K L+ ++ +VE +PL WYP LAWH+N SR LRK+ LE+FH+FL E E GNI
Sbjct: 99 FKELEDLEVDGQKVEVPQPLSWYPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNI 158
Query: 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120
+RQEAVSM+PPL L+V+P H +LDMCAAPGSKT QL+E++H N P G VIAND+D
Sbjct: 159 SRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMN-VPFPEGFVIANDVD 217
Query: 121 VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 180
+RC LL+HQ KR+ + ++V NH+A P + I+ + L +DR+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQ------------IDVDGRKEILFYDRI 265
Query: 181 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240
LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG L GGR+VYSTCS+NP
Sbjct: 266 LCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNP 325
Query: 241 VENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRR 299
+E+EAV+A +L K EG++EL DVSNE+P L PG+ +WKV K G W V R
Sbjct: 326 IEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRH 385
Query: 300 IGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLER 359
I P+MFP PK E++ + LER
Sbjct: 386 TQIRPTMFP------------PKD-------------------------PEKLQAMHLER 408
Query: 360 CMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGM 419
C+R++PH QN+G FF+AVL K S +P ++ KLQ + E
Sbjct: 409 CLRILPHHQNTGGFFVAVLVKKSSMPWNKRQ---------------PKLQGKSAETREST 453
Query: 420 EVDLADGTDEKDPEGS-LEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTG 478
++ AD T+ K + S LE+ S + + TE N +K +
Sbjct: 454 QLSPADLTEGKPTDPSKLESPSFTGTGDTEI-----------AHATEDLENNGSKKDGVC 502
Query: 479 G---KRKLQIQGKWKGIDPVIFF-NDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVK 534
G +K+++ G + DP +F D+ + I+ FY +D SF L++R + + +
Sbjct: 503 GPPPSKKMKLFGFKE--DPFVFIPEDDPLFPPIEKFYALDPSFP-RMNLLTRTTEGKK-R 558
Query: 535 RIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILP 594
++Y VSK +++ L N +++K+ + G+K++ R S G C+FR++ EG+ + P
Sbjct: 559 QLYMVSKELRNVLLNN---SEKMKVINTGIKVWCRNNS--GEEFDCAFRLAQEGIYTLYP 613
Query: 595 YITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPI 654
+I +I+ S+ D K LL + F + +E +A L G V+ +NP
Sbjct: 614 FINSRIITVSMEDVKILLTQENPFFRK-LSSETYSQAKDLAKGSIVLKYEPDS---ANPD 669
Query: 655 QIDASTIAIGCWKGRASLSVMVTAIDCQELLERL-LMRLEIEKGDLVQENALGTDE 709
+ + G W+G+AS+ V E L L +M LE+ G+ +E + T+E
Sbjct: 670 ALQCPIVLCG-WRGKASIRTFVPK---NERLHYLRMMGLEV-LGEKKKEGVILTNE 720
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2
PE=1 SV=2
Length = 757
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 253/735 (34%), Positives = 381/735 (51%), Gaps = 107/735 (14%)
Query: 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNI 60
K L+ ++ +VE +PL WYP LAWH+N SR LRK+ L +FH+FL E E GNI
Sbjct: 99 FKELEDLEVDGQKVEVPQPLSWYPEELAWHTNLSRKILRKSPLLAKFHQFLVSETESGNI 158
Query: 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120
+RQEAVSM+PPL L+V+P H +LDMCAAPGSKT QL+E++H + P G VIAND+D
Sbjct: 159 SRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMS-VPFPEGFVIANDVD 217
Query: 121 VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 180
+RC LL+HQ KR+ + ++V NH+A P ++ + L +DR+
Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLT------------VDVDGRKEILFYDRI 265
Query: 181 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240
LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG L GGR+VYSTCS+NP
Sbjct: 266 LCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNP 325
Query: 241 VENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRR 299
VE+EAV+A +L K EG++EL DVS E+P L PG+ +WKV + G W A V + R
Sbjct: 326 VEDEAVIAALLEKSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRH 385
Query: 300 IGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLER 359
I P+MFP TD+ E++ + LER
Sbjct: 386 TQIRPTMFP-------PTDL------------------------------EKLQAMHLER 408
Query: 360 CMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGM 419
C+R++PH QN+G FF+AVL K +P+P ++ K+QN+ + E
Sbjct: 409 CLRILPHHQNTGGFFVAVLVKKAPMPWNKRQ---------------PKVQNK-SAEAREP 452
Query: 420 EVDLADGTDEKDP--EGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERT 477
V E +P + LE+ I GA DSE NTE+ ++
Sbjct: 453 RVSSHVAATEGNPSDQSELESQMI---TGAG-----------DSETAHNTENTESNEKKD 498
Query: 478 G-----GKRKLQIQGKWKGIDPVIFF-NDETIINSIKTFYGIDDSFQLSGQLVSRNGDTN 531
G +K+++ G + DP +F D+ + I+ FY +D SF L++R +
Sbjct: 499 GVCGPPPSKKMKLFGFKE--DPFVFIPEDDPLFPPIEKFYALDPSFP-RMNLLTRTTEGK 555
Query: 532 RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPV 591
+ +++Y VSK +++ L N +++K+ + G+K++ R S G C+FR++ EG+
Sbjct: 556 K-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVWCRNNS--GEEFDCAFRLAQEGIYT 609
Query: 592 ILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALS 651
+ P+I +I+ S+ D K LL + F + +E + L G V+ +
Sbjct: 610 LYPFINSRIITVSMEDVKTLLTQENPFFRK-LSSEAYSQVKDLAKGSVVLKYEPDS---A 665
Query: 652 NPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGD----LVQENALGT 707
NP + + G W+G+AS+ V + L + + + EK L ENA
Sbjct: 666 NPDTLQCPIVLCG-WRGKASIRTFVPKNERLHYLRMMGLEVLGEKKKEGVILTNENAASP 724
Query: 708 DEVQEEMNDNGKEEP 722
++ +E ++P
Sbjct: 725 EQPGDEDAKQTAQDP 739
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis
GN=nsun2 PE=2 SV=1
Length = 698
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 236/667 (35%), Positives = 359/667 (53%), Gaps = 94/667 (14%)
Query: 13 EVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPL 72
++E +PL WYP LAWH+N SR +RK+ LE+FH+FL E E GNI+RQEAVSM+PP+
Sbjct: 109 KIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFHQFLVSETESGNISRQEAVSMIPPV 168
Query: 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132
L+VQP H +LDMCAAPGSKT Q++E++H N P G VIAND+D +RC LL+HQ K
Sbjct: 169 LLNVQPHHKILDMCAAPGSKTAQIIEMLHADMN-VPFPEGFVIANDVDNKRCYLLVHQAK 227
Query: 133 RMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192
R+ + ++V NH+A P IE+ + L +DR+LCDVPCSGDGT+
Sbjct: 228 RLNSPCIMVVNHDASSIPRLL------------IENNGSREVLYYDRILCDVPCSGDGTM 275
Query: 193 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 252
RK D+W+KW LH LQ++IA RG+ L GGR+VYSTCS+NPVE+EAV+ +L
Sbjct: 276 RKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIVSLLD 335
Query: 253 KCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGS 311
K EGS+EL DV++E+P L PG+ +W+V K G W + V R I P+MFP
Sbjct: 336 KSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTSRHTQIRPTMFP--- 392
Query: 312 SHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSG 371
++D EE++ + L RCMR++PH QN+G
Sbjct: 393 --------------------------LKD--------EEKLKSMNLNRCMRILPHHQNTG 418
Query: 372 AFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTE-EVNGMEVDLADGTDEK 430
FF+AVL K +P+P ++ + + PP + + E+ D++ DE
Sbjct: 419 GFFVAVLIKKAPMPWNKRQPKLQRR-------PPVSVCDASVAPEIVKAVADISAIADEP 471
Query: 431 DPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWK 490
++D E+G E P T + S+ V +K + G ++
Sbjct: 472 ---------AVDAENG---ETKPCTNQSGSSKTDSVCCPPPSKKMKLFGFKE-------- 511
Query: 491 GIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDL 549
DP +F + D+ I I+ FY +D SF L++R + + +++Y VSK +++ L
Sbjct: 512 --DPFVFLSEDDPIFEPIQKFYALDPSFP-KKNLLTRTQEGKK-RQLYMVSKELRNVLLH 567
Query: 550 NFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFK 609
N +++K+ + G+K+ R + +G C++R++ EG+ + P+I +IL S+ D K
Sbjct: 568 N---SEKMKVINTGIKVLCR--NNDGEQYGCAYRLAQEGIYSLYPFINARILTVSVEDIK 622
Query: 610 HLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGR 669
LL + + F E ++A+ L MG V+ + P + + G W+G+
Sbjct: 623 VLLTQENPFLSKF-SKETQKQANNLDMGSIVLKYEPDPQ---QPETLQCPIVLCG-WRGK 677
Query: 670 ASLSVMV 676
S+ V
Sbjct: 678 TSIRSFV 684
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4b PE=3 SV=2
Length = 685
Score = 335 bits (859), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 237/707 (33%), Positives = 338/707 (47%), Gaps = 148/707 (20%)
Query: 8 VIEEGE-VEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAV 66
V+ EG+ + P LPWYP+ LA+ + + +RK+ L+R +FL ENE GNI RQEAV
Sbjct: 88 VVHEGQTIPPPTVLPWYPDGLAYIVDAQKDVIRKSPPLKRLQRFLVSENEAGNINRQEAV 147
Query: 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN---------GMVIAN 117
SM+PPLFLDV+P H +LDMCAAPGSKT QL+E +++ N + G+VIAN
Sbjct: 148 SMLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIAN 207
Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
D D +R +L+HQ R+ + N++V NH+A P SS SD G+ L F
Sbjct: 208 DADPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKG--SSPSD-GLNVIEEKKILKF 264
Query: 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237
DR+L DVPCSGDGT RK +WR+W+ LH LQ++I +RG+ LLKVGG +VYSTCS
Sbjct: 265 DRILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCS 324
Query: 238 MNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKF 297
+NP+ENEAVV L+ G+V LVDVS ++P L PGL WKV D +
Sbjct: 325 INPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSPAENTN 384
Query: 298 RRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPL 357
+I + SM+P EEE+S L +
Sbjct: 385 DKIELTESMWPLP--------------------------------------EEEMSKLHI 406
Query: 358 ERCMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVN 417
ERC RL PH QN+G FF+AVLQK P+ + +P++ PP+ + Q TE+
Sbjct: 407 ERCARLYPHMQNTGGFFVAVLQKTD--PINSRSFDPKKYTASMEILPPEN-KRQRTEK-- 461
Query: 418 GMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERT 477
G DE +NS + G + D E
Sbjct: 462 --------GVDE-------ASNSTLTKSGNSY---------FDEE--------------- 482
Query: 478 GGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRI 536
P ++ N D+T I +I FYGID SF Q RN V+ I
Sbjct: 483 ----------------PFVYINPDDTSIKTIVDFYGIDPSFP-RDQFFVRNQSGIPVRSI 525
Query: 537 YYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT--------SREGNSAPCSFRISSEG 588
Y+ K+ ++ N ++K G++ F +Q S + N C+FRI S G
Sbjct: 526 YFACSLFKEIIEAN---TNRVKFVHGGVRFFVKQEISQLLKDFSLKANKDICNFRIHSNG 582
Query: 589 LPVILPYITKQILY-ASLVDFKHLLQYKTIKFADFVDAEFGEKA-SKLMMGCCVIVLSKG 646
+ +I P++ ++ Y A L D K L++ + F ++ +K K+ +GC
Sbjct: 583 VNIISPFLNEKHFYDAGLKDLKILVKNEYPHVEQFSESGMLKKEFEKMPLGC-------- 634
Query: 647 GEALSNPIQIDAST---------IAIGCWKGRASLSVMVTAIDCQEL 684
N +++DA T I W+ S ++M+ + Q L
Sbjct: 635 -----NILRVDAQTKDGALMDMLILQPIWRSPTSCNLMLARKEKQNL 676
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila
melanogaster GN=CG6133 PE=2 SV=1
Length = 746
Score = 325 bits (833), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 201/573 (35%), Positives = 292/573 (50%), Gaps = 114/573 (19%)
Query: 20 LPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPD 79
LPWYPN LA+ + +R +R+++ L R H FL +E G I+RQEAVSM+PP+ LDV+P
Sbjct: 118 LPWYPNGLAYQLHLTRKDIRRSEPLYRLHNFLIVETTAGGISRQEAVSMIPPIVLDVRPT 177
Query: 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL 139
VLDMCAAPGSKT QL+E +H + +P G V+AND+D RC +L+HQ KR+ + L
Sbjct: 178 DKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCL 237
Query: 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW 199
+VTNH++ FP K + + L FD++LCDVPCSGDGTLRK PDIW
Sbjct: 238 LVTNHDSSVFPNLVTTK-----------PDGSKAILKFDKILCDVPCSGDGTLRKNPDIW 286
Query: 200 RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVE 259
KWN+ LH +Q +I RG +L+VGGR+VYSTCS+NP+ENEAV+ I++ +G++E
Sbjct: 287 LKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALE 346
Query: 260 LVDVSNEVPQLIHRPGLRKWKVRDKGI--WLASHKHVRKFRRIGIVPSMFPSGSSHMDAT 317
LVD + VP L ++PG+ WK+ K + + V + I P MFP +
Sbjct: 347 LVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA------ 400
Query: 318 DIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAV 377
+E++ + LE+C+R++PH Q+SG FF+AV
Sbjct: 401 --------------------------------DEMAKIGLEKCLRVLPHLQDSGGFFVAV 428
Query: 378 LQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLE 437
L+K L + D E+ V L + + E ++
Sbjct: 429 LEKRRQL----------------------SFEKNDVVEL----VKLNETAKQPAAEPQVD 462
Query: 438 ANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIF 497
A DG + EE VP + K R G ++ DP +F
Sbjct: 463 A------DGKPI------------EEKSVPWGPQRKKRRLHGYKE----------DPYVF 494
Query: 498 FND-ETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQ 556
F + + +IK FY +D+S LS + + T + K IYY S+ ++ DL
Sbjct: 495 FGENDPDYQAIKEFYQLDES--LSQRCLLTRCVTEKKKNIYYCSEPIR---DLVLNNENN 549
Query: 557 LKITSVGLKMFERQTSREGNSAPCSFRISSEGL 589
+KI + G+K F R +R FR++ EGL
Sbjct: 550 IKIINTGVKTFVRCENRHTVH---PFRLAQEGL 579
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4a PE=1 SV=3
Length = 688
Score = 316 bits (809), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 225/693 (32%), Positives = 343/693 (49%), Gaps = 133/693 (19%)
Query: 20 LPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPD 79
LPWYP+ +A+ + S+ +RK+ L+ +FL LE E G+I RQE+VSMVPPL L+V+
Sbjct: 101 LPWYPDGMAFMLDISKEVIRKSPHLKALQEFLVLETEAGDINRQESVSMVPPLLLNVESH 160
Query: 80 HFVLDMCAAPGSKTFQLLEIIHQSTN----PGALPNGMVIANDLDVQRCNLLIHQTKRMC 135
H VLDMCAAPGSKT QLLE +H+ T LP+G+VIAND D +R ++L+HQ KR+
Sbjct: 161 HKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVHQIKRLN 220
Query: 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195
+ N+++ NH+A P NF +S G + L FDR+L DVPCSGDGT RK
Sbjct: 221 SPNVLIVNHDASFLP------NFHLSSPDGKKF------LKFDRILADVPCSGDGTFRKN 268
Query: 196 PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255
+W +W++ GLH+ Q++I MRG+ LL+ GGR+VYSTCS+NP+ENEAVV+ +L
Sbjct: 269 IALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATR 328
Query: 256 GSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMD 315
GSV LVDVS+E+PQL G+ W V D + I PS
Sbjct: 329 GSVRLVDVSSELPQLKRSQGVDNWVVCDSD--------------LNIYPSF--------- 365
Query: 316 ATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFI 375
D PK E +++ L ++E+++L ++ C+R+ PH QN+G FF+
Sbjct: 366 --DTLPK----------ELYEKMPPTLWPLP--KKELAELNIQNCLRIYPHFQNTGGFFV 411
Query: 376 AVLQKVSPLPVQEKHINPEEKMLPRNDDPP----KKLQNQDTEEVNGMEVDLADGTDEKD 431
AVL+K L K + K+ R P K + QDT+E + + LA E
Sbjct: 412 AVLEKYENLTSSMKTAVDDNKVFLREQKLPSEQASKKRKQDTQETSS-DSKLA----EVK 466
Query: 432 PEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKG 491
P+G + GG R +
Sbjct: 467 PKG-----------------------------------------KNGGNR-------FHE 478
Query: 492 IDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLN 550
+DP ++ D+ + I +GID++ Q RN + K IY + ++ ++ N
Sbjct: 479 LDPFVYIKEDDQALEKIYKKFGIDEAIIKKNQFFVRNVNGVPTKAIYISNDLFRNVIENN 538
Query: 551 FRVGQQLKITSVGLKMFERQ----TSRE--GNSAPCSFRISSEGLPVILPYITKQILY-A 603
++K GLK+F RQ SRE + C FR+ S+G + +I + L+
Sbjct: 539 ---RNRVKFVHGGLKIFVRQDFGSLSREIAEKNGTCVFRVQSDGANLASHFIAESCLFHT 595
Query: 604 SLVDFKHLLQYKTIKFADFV-DAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIA 662
+L D LL ++ + DF D+ F ++ + L +G ++ + E + +
Sbjct: 596 TLSDLFILLDHEAVTIDDFPEDSLFRKEYNHLDLGSTLLHVDLAKEE-----SVIKKQVY 650
Query: 663 IGCWKGRASLSVMVTAIDCQELLERLLMRLEIE 695
I WK +V+++ E+ ++L+IE
Sbjct: 651 IPLWKSVRICNVLLSNS------EKRTLKLQIE 677
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NCL1 PE=1 SV=1
Length = 684
Score = 313 bits (801), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 226/377 (59%), Gaps = 58/377 (15%)
Query: 6 TEVIEEGE-VEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQE 64
T V EGE ++ LPWYP++LAW + + +RKN+ + +FL +EN +GNI+RQE
Sbjct: 92 TNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVENAVGNISRQE 151
Query: 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRC 124
AVSM+PP+ L+V+P H VLDMCAAPGSKT QL+E +H+ T+ P+G V+AND D +R
Sbjct: 152 AVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDE---PSGFVVANDADARRS 208
Query: 125 NLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV 184
++L+HQ KR+ +ANL+V NH+AQ FP R + N ++ +D L FDR+LCDV
Sbjct: 209 HMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKND----------VLKFDRILCDV 258
Query: 185 PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 244
PCSGDGT+RK ++W+ WN G GLH++Q+ I RG+ LLK GR+VYSTCS+NP+ENE
Sbjct: 259 PCSGDGTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENE 318
Query: 245 AVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVP 304
AVVAE LRK + LV+ +++P LI G+ KW V D+ +
Sbjct: 319 AVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNL------------------ 360
Query: 305 SMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLV 364
DEG ++ + + EEE S L+ CMR+
Sbjct: 361 ---------------------TEKTKGDEG--TLDSFFSPS---EEEASKFNLQNCMRVY 394
Query: 365 PHDQNSGAFFIAVLQKV 381
PH QN+G FFI V +KV
Sbjct: 395 PHQQNTGGFFITVFEKV 411
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 29/243 (11%)
Query: 457 EKVDSE----ETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDE-TIINSIKTFY 511
EK+ SE E+E P + K E K +L +P +F + + + FY
Sbjct: 420 EKLSSETPALESEGPQTKKIKVEEVQKKERLPRDA---NEEPFVFVDPQHEALKVCWDFY 476
Query: 512 GIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT 571
GID+ F + LV RN + +Y V ++KD + N +LKI G+K+F Q
Sbjct: 477 GIDNIFDRNTCLV-RNATGEPTRVVYTVCPALKDVIQAN---DDRLKIIYSGVKLFVSQR 532
Query: 572 SREGNSAPCSFRISSEGLPVILPYI-TKQILYASLVDFKHLLQYKTIKFADF----VDAE 626
S CS+RI SE LP++ ++ + +I+ A+L KHLL F D +D +
Sbjct: 533 S----DIECSWRIQSESLPIMKHHMKSNRIVEANLEMLKHLLIESFPNFDDIRSKNIDND 588
Query: 627 FGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLE 686
F EK +KL GC I +S+ A N + + WKG +++MV D ELL
Sbjct: 589 FVEKMTKLSSGCAFIDVSRNDPAKEN--------LFLPVWKGNKCINLMVCKEDTHELLY 640
Query: 687 RLL 689
R+
Sbjct: 641 RIF 643
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 53 LENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNG 112
+E +G I QEA SM+PP+ LD +P +LDM AAPGSKT Q+ + + G
Sbjct: 85 IEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMEN--------EG 136
Query: 113 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 172
+IAND R N+LI R VT + +F
Sbjct: 137 CIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT----------------- 179
Query: 173 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232
FDRVL D PCS G +RK R W++G LQ ++ + LK GG +V
Sbjct: 180 ----FDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLV 235
Query: 233 YSTCSMNPVENEAVVAEILRKCEGSVELVDV 263
YSTC+++P+ENE VV +L+K + +E V +
Sbjct: 236 YSTCTVDPLENEEVVDFLLQKTDAKLEKVKL 266
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 136/297 (45%), Gaps = 43/297 (14%)
Query: 14 VEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLF 73
++ + P W+ + + W N ++L + L +E+ G QEA SM+PP
Sbjct: 50 IKLMTPKGWHFDPIPWCENGYWIKLDQEVQLGN-----TIEHLQGLFYIQEASSMLPPTA 104
Query: 74 LDVQPDH----FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129
L H +VLDM +APGSKT Q+ ++ G+++AN+ R +L
Sbjct: 105 LLSVEQHDAQQYVLDMASAPGSKTTQIAALMGN--------KGLLVANEYSASRVKVLHA 156
Query: 130 QTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189
RM AN +T+ +A+ F + E +FD VL D PCSG+
Sbjct: 157 NIARMGVANCALTHFDARVF------------GEYMFE--------IFDSVLLDAPCSGE 196
Query: 190 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAE 249
GT+RK PD + W+ G+ Q + LK GG +VYSTC+++ EN+ V
Sbjct: 197 GTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELVYSTCALSRQENQNVCDY 256
Query: 250 ILRKCEGSVELVDVSNEVP----QLIHRPGLRKW-KVRD-KGIWLASHKHVRKFRRI 300
+ ++ +VE +++S+ P L W ++ D +G ++A K V R+
Sbjct: 257 LKQRYPDAVEFINLSSLFPGADKSCTEEGFLHVWPQIYDSEGFFVAKIKKVSSIERV 313
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 116/259 (44%), Gaps = 50/259 (19%)
Query: 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFL-- 74
+ P+PW + W S S +QL T+E + QEA SM+PP+ L
Sbjct: 60 LEPIPWCQDGF-WISLDSDVQL--GNTVEHLQGLFYI---------QEASSMLPPIALFS 107
Query: 75 --DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132
+ +H +LDM +APGSKT Q+ ++ S G++IAN+ R +L
Sbjct: 108 TKTDKAEHTILDMASAPGSKTTQIAAMMDNS--------GLLIANEYSSSRVKVLHANVL 159
Query: 133 RMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL---FDRVLCDVPCSGD 189
RM +N +T+ +A+ F G+ L FD +L D PCSG+
Sbjct: 160 RMGVSNTALTHFDARVF-----------------------GEYLYDQFDAILLDAPCSGE 196
Query: 190 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAE 249
GT+RK P W + + + Q + LK GG +VYSTC+++ +EN+ V
Sbjct: 197 GTIRKDPLALNNWGLAENSAIAETQKALLESAFLALKTGGSLVYSTCALSKLENQDVCEH 256
Query: 250 ILRKCEGSVELVDVSNEVP 268
+ +VE ++ P
Sbjct: 257 LRSTFPEAVEFESLATLFP 275
>sp|Q3IHA0|RSMF_PSEHT Ribosomal RNA small subunit methyltransferase F
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rsmF PE=3 SV=2
Length = 482
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 32/197 (16%)
Query: 58 GNITRQEAVSMVPPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVI 115
G + QEA SM+PP+ L +H +VLDM +APGSKT QL +++ G+++
Sbjct: 96 GAMYVQEASSMLPPIALKQSIEHTNYVLDMASAPGSKTSQLAALMNN--------QGVLV 147
Query: 116 ANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC-RANKNFSSASDKGIESESNMGQ 174
AN+L R +L KRM N ++ HF G N F
Sbjct: 148 ANELSSSRLKVLSATLKRMGVGNCALS-----HFDGVIFGNYMFEC-------------- 188
Query: 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234
FD +L D PCSG+GT+RK D + W++ + +Q + LK GG +VYS
Sbjct: 189 --FDSILLDAPCSGEGTVRKDADALKNWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYS 246
Query: 235 TCSMNPVENEAVVAEIL 251
TC++ P+EN+ V +L
Sbjct: 247 TCTLTPLENQHVCDFLL 263
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 50/257 (19%)
Query: 19 PLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPP--LF--L 74
P+PW + W + + +QL T+E + QEA SM+PP LF L
Sbjct: 62 PIPWCSDGF-WVALDNEIQL--GNTIEHIQGLFYI---------QEASSMLPPTALFDGL 109
Query: 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134
D ++ +LDM +APGSKT Q+ ++ G+++AN+ R +L +RM
Sbjct: 110 DNSSEYTILDMASAPGSKTTQMASLMDN--------KGLLVANEYSSSRVKVLHANVQRM 161
Query: 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL---FDRVLCDVPCSGDGT 191
N +T+ +A+ F G+ L FD +L D PCSG+GT
Sbjct: 162 GVYNTALTHFDARVF-----------------------GEYLYHQFDAILLDAPCSGEGT 198
Query: 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 251
+RK P R W++ + Q + LK GG +VYSTC+++ EN+ V ++
Sbjct: 199 IRKDPLALRNWSLEENASIIETQKALIESAFLALKTGGSLVYSTCALSRSENQEVCEHLM 258
Query: 252 RKCEGSVELVDVSNEVP 268
+VE +S P
Sbjct: 259 SCFPQAVEFQSLSELFP 275
>sp|B0TIZ6|RSMF_SHEHH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
halifaxensis (strain HAW-EB4) GN=rsmF PE=3 SV=1
Length = 479
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 116/264 (43%), Gaps = 57/264 (21%)
Query: 19 PLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFL-DVQ 77
P+PW N W + S +QL T+E G QEA SM+PP L D
Sbjct: 62 PIPWC-NQGFWVTISSDLQL--GNTIEHLQ---------GLFYIQEASSMLPPTALFDSH 109
Query: 78 PDH----------FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127
D+ VLDM +APGSKT Q+ +++ G+++AN+ R +L
Sbjct: 110 ADNENDLSQFAQTRVLDMASAPGSKTTQIAALMNN--------QGLLVANEYSASRVKVL 161
Query: 128 IHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF---DRVLCDV 184
RM +N +T+ +A+ F G+ LF D VL D
Sbjct: 162 HANVARMGVSNCALTHFDARVF-----------------------GEYLFETFDSVLLDA 198
Query: 185 PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 244
PCSG+GT+RK PD + W+ G+ Q + LKVGG +VYSTC+++ EN+
Sbjct: 199 PCSGEGTIRKDPDALKNWDNNDNKGIVDTQKALIESAFLALKVGGCLVYSTCALSRQENQ 258
Query: 245 AVVAEILRKCEGSVELVDVSNEVP 268
V + +VE ++ P
Sbjct: 259 DVCHHLKTAFGEAVEFAALTELFP 282
>sp|A8H3W2|RSMF_SHEPA Ribosomal RNA small subunit methyltransferase F OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmF PE=3
SV=1
Length = 488
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 115/271 (42%), Gaps = 58/271 (21%)
Query: 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFL-- 74
P+PW + W + +QL T+E G QEA SM+PP L
Sbjct: 60 FEPIPWCKDGF-WVTLTQEIQL--GNTIEHLQ---------GLFYIQEASSMLPPTALFE 107
Query: 75 ------------DVQPDHF----VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118
D D F VLDM +APGSKT Q+ ++ G++IAN+
Sbjct: 108 PLEVAVAAENTEDDGSDDFSNKIVLDMASAPGSKTTQIAALMKN--------QGLLIANE 159
Query: 119 LDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFD 178
R +L RM AN +T+ +A+ F + E+ FD
Sbjct: 160 YSASRVKVLHANVARMGVANCALTHFDARVF------------GEYMFET--------FD 199
Query: 179 RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238
+L D PCSG+GT+RK PD + W+ G+ Q + LKVGG +VYSTC++
Sbjct: 200 SILLDAPCSGEGTIRKDPDALKNWDNNDDKGIVETQKALIESAFLALKVGGSLVYSTCAL 259
Query: 239 NPVENEAVVAEILRKCEGSVELVDVSNEVPQ 269
+ EN+ V + +VE ++ PQ
Sbjct: 260 SRQENQDVCHHLKSLYGDAVEFGSLATLFPQ 290
>sp|A1S788|RSMF_SHEAM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rsmF PE=3
SV=1
Length = 467
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 93/198 (46%), Gaps = 36/198 (18%)
Query: 54 ENEIGNITRQEAVSMVPP--LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+PP LF+D +P +LD+ +APGSKT QL ++H
Sbjct: 85 EHYQGLFYIQEASSMMPPCALFMDKEPRQLLLDVASAPGSKTTQLAALMHN--------Q 136
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
G++IAN+ R L +RM AN+ +T + + F
Sbjct: 137 GLIIANEYSASRTKALHANLQRMGVANVAITQFDGRVF---------------------- 174
Query: 172 MGQLLF---DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228
G L+ D + D PCSG+GT+RK P + W + LQ + LK G
Sbjct: 175 -GAHLYETLDAIQLDAPCSGEGTVRKDPLSLKNWCPDEIEAIAELQRDLIDSAFQALKPG 233
Query: 229 GRIVYSTCSMNPVENEAV 246
G +VYSTC++N ENE V
Sbjct: 234 GVLVYSTCTLNRRENEDV 251
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 33/221 (14%)
Query: 53 LENEIGNITRQEAVSMVPPLFLDVQP-----DHFVLDMCAAPGSKTFQLLEIIHQSTNPG 107
+E+ G QEA SM+PP L +P +LDM +APGSKT QL +++
Sbjct: 84 VEHIQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNN----- 138
Query: 108 ALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 167
G+++AN+ R +L +RM +NL +T+ +A+ F F S
Sbjct: 139 ---QGLLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVF----GKYLFES------- 184
Query: 168 SESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227
FD +L D PC G+GT+RK PD + W+ + S+Q + LK
Sbjct: 185 ---------FDAILLDAPCGGEGTVRKDPDALKHWDESEIEAIASVQRDLIESAFLALKP 235
Query: 228 GGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
GG +VYSTC++N EN+ V + +V+ ++ P
Sbjct: 236 GGSLVYSTCTLNRRENQDVCLHLKATYGDAVQFESLAGLFP 276
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNKGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNKGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNKGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 30/208 (14%)
Query: 63 QEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120
QEA SM+P LF D V+D+ AAPGSKT Q+ ++ G ++AN+
Sbjct: 100 QEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNN--------EGTILANEFS 151
Query: 121 VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 180
R +L R +N+ +T HF G + F +A + +FD +
Sbjct: 152 ASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE-----------MFDAI 191
Query: 181 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240
L D PCSG+G +RK PD + W+ + + Q ++ L++GG +VYSTC++N
Sbjct: 192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNR 251
Query: 241 VENEAVVAEILRKCEGSVELVDVSNEVP 268
ENEAV + +VE + + + P
Sbjct: 252 EENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|A1RIZ0|RSMF_SHESW Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain W3-18-1) GN=rsmF PE=3 SV=2
Length = 486
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 108/246 (43%), Gaps = 50/246 (20%)
Query: 19 PLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQP 78
P+PW + W S QL LE+ G QEA SM+PP L P
Sbjct: 62 PIPWCKDGF-WISYDEEEQLGN-----------ALEHIQGLFYIQEASSMLPPTAL-FTP 108
Query: 79 DHF--------VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130
F VLD+ +APGSKT Q+ ++H S G++IAN+ R +L
Sbjct: 109 SAFTPSAKWQCVLDLASAPGSKTTQIAALMHNS--------GLLIANEYSASRVKVLHAN 160
Query: 131 TKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190
RM ++ +T HF G R + S FD VL D PC G+G
Sbjct: 161 VLRMGASHCALT-----HFDG-RVFGEYLYES--------------FDAVLIDAPCGGEG 200
Query: 191 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEI 250
T+RK D + W++ + Q + LK GG +VYSTC++N +EN+ V E
Sbjct: 201 TVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLENQG-VCEY 259
Query: 251 LRKCEG 256
L++ G
Sbjct: 260 LKQTYG 265
>sp|A4Y7J8|RSMF_SHEPC Ribosomal RNA small subunit methyltransferase F OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rsmF PE=3
SV=2
Length = 486
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 108/246 (43%), Gaps = 50/246 (20%)
Query: 19 PLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQP 78
P+PW + W S QL LE+ G QEA SM+PP L P
Sbjct: 62 PIPWCKDGF-WISYDEEEQLGN-----------ALEHIQGLFYIQEASSMLPPTAL-FTP 108
Query: 79 DHF--------VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130
F VLD+ +APGSKT Q+ ++H S G++IAN+ R +L
Sbjct: 109 SAFTPSAKWQCVLDLASAPGSKTTQIAALMHNS--------GLLIANEYSASRVKVLHAN 160
Query: 131 TKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190
RM ++ +T HF G R + S FD VL D PC G+G
Sbjct: 161 VLRMGASHCALT-----HFDG-RVFGEYLYES--------------FDAVLIDAPCGGEG 200
Query: 191 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEI 250
T+RK D + W++ + Q + LK GG +VYSTC++N +EN+ V E
Sbjct: 201 TVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLENQG-VCEY 259
Query: 251 LRKCEG 256
L++ G
Sbjct: 260 LKQTYG 265
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 38/222 (17%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLD--VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGAL 109
E+ G QEA SM+P LF V+ D +LD AAPGSKT Q+ +++
Sbjct: 89 EHLSGLFYIQEASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNN------- 141
Query: 110 PNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESE 169
GM++AN+ R +L +R N+ +T+ +A+ F
Sbjct: 142 -QGMLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVF-------------------- 180
Query: 170 SNMGQLL---FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226
GQ L FD +L D PCSG+GT+RK D R W++ + + ++Q + LK
Sbjct: 181 ---GQWLPETFDAILLDAPCSGEGTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALK 237
Query: 227 VGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
GG +VYSTC+++ EN+AV +L K ++ L +++ P
Sbjct: 238 PGGVLVYSTCTLSQQENQAVCQSLLEKFGDALTLDSLADLFP 279
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 111/254 (43%), Gaps = 40/254 (15%)
Query: 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVP--PLFL 74
+ P+PW W S L T E + QEA SM+P LF
Sbjct: 64 LTPIPWCEEGF-WIERDSEDALPLGSTAEHLSGLFYI---------QEASSMLPVAALFA 113
Query: 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134
D V+D+ AAPGSKT Q I + N GA ++AN+ R +L R
Sbjct: 114 DGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRC 165
Query: 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194
+N+ +T HF G + F +A + +FD +L D PCSG+G +RK
Sbjct: 166 GISNVALT-----HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRK 205
Query: 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254
PD + W+ + + Q ++ L+ GG +VYSTC++N ENEAV +
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETY 265
Query: 255 EGSVELVDVSNEVP 268
+VE + + + P
Sbjct: 266 PDAVEFLPLGDLFP 279
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQ---IAARMGNRGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQ---IAARMGNRGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQ---IAARMGNRGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQ---IAARMGNRGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQ---IAARMGNRGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---ISARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---ISARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---ISARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 40/254 (15%)
Query: 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVP--PLFL 74
+ P+PW W ++ L T E + QEA SM+P LF
Sbjct: 64 LTPIPWCEEGF-WIERYNEDALPLGSTAEHLSGLFYI---------QEASSMLPVAALFA 113
Query: 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134
+ V+D+ AAPGSKT Q I + N GA ++AN+ R +L R
Sbjct: 114 NGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA-----ILANEFSASRVKVLHANISRC 165
Query: 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194
+N+ +T HF G + F +A + +FD +L D PCSG+G +RK
Sbjct: 166 GISNVALT-----HFDG----RVFGAAVPE-----------MFDAILLDAPCSGEGVVRK 205
Query: 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254
PD + W+ + + Q ++ L+ GG +VYSTC++N ENEAV +
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETY 265
Query: 255 EGSVELVDVSNEVP 268
+VE + + + P
Sbjct: 266 PDAVEFLPLGDLFP 279
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---ISARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+D+ AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQ---IAARMNNEGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A9MNH4|RSMF_SALAR Ribosomal RNA small subunit methyltransferase F OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmF PE=3 SV=2
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 103/217 (47%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q I + N GA
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQ---IAARMGNHGA--- 144
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 --ILANEFSASRVKILHANLCRCGVANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLESAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + +++ P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP 279
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q+ +
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN--------R 142
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
G ++AN+ R +L R AN +T HF G + F +A +
Sbjct: 143 GTILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 54 ENEIGNITRQEAVSMVP--PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN 111
E+ G QEA SM+P LF D V+DM AAPGSKT Q+ +
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN--------R 142
Query: 112 GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESN 171
G ++AN+ R +L R AN +T HF G + F +A +
Sbjct: 143 GTILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE------- 186
Query: 172 MGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +
Sbjct: 187 ----MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTL 242
Query: 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
VYSTC++N ENEAV + +VE + + + P
Sbjct: 243 VYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2
Length = 473
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 41/251 (16%)
Query: 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDV 76
+ P+PW N ++ S + L E+ G QEA SM+P L +
Sbjct: 63 LTPVPWCENGFWIDADESLVPLGNTA-----------EHMAGLFYIQEASSMMPVSALFM 111
Query: 77 QPDHF--VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134
H+ VLDM AAPGSKT Q+ ++ G+++AN+ R +L +R
Sbjct: 112 GNAHYDSVLDMAAAPGSKTTQMAALMDN--------QGVLVANEFSASRVKVLHANIERC 163
Query: 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194
N ++N + F G + FD VL D PCSG+GT+RK
Sbjct: 164 GIRNTALSNFDGCVFGGWLPER--------------------FDAVLIDAPCSGEGTIRK 203
Query: 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254
PD + W++ + + Q + LKVGG +VYSTC+++ EN+ V + +
Sbjct: 204 DPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTY 263
Query: 255 EGSVELVDVSN 265
+V + N
Sbjct: 264 GDAVSFESLGN 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,592,946
Number of Sequences: 539616
Number of extensions: 12095202
Number of successful extensions: 33757
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 33087
Number of HSP's gapped (non-prelim): 377
length of query: 731
length of database: 191,569,459
effective HSP length: 125
effective length of query: 606
effective length of database: 124,117,459
effective search space: 75215180154
effective search space used: 75215180154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)