Query 004775
Match_columns 731
No_of_seqs 392 out of 2543
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 12:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2198 tRNA cytosine-5-methyl 100.0 1.1E-67 2.4E-72 562.0 18.7 283 1-300 78-362 (375)
2 PRK11933 yebU rRNA (cytosine-C 100.0 3.7E-52 8E-57 466.6 32.5 378 17-644 60-442 (470)
3 COG0144 Sun tRNA and rRNA cyto 100.0 1.8E-52 3.8E-57 456.5 21.8 182 56-263 134-315 (355)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 4E-49 8.7E-54 418.1 15.2 181 56-264 63-247 (283)
5 KOG1122 tRNA and rRNA cytosine 100.0 1.2E-47 2.5E-52 412.1 13.1 193 43-268 211-403 (460)
6 TIGR00446 nop2p NOL1/NOP2/sun 100.0 9.9E-45 2.1E-49 381.0 20.4 172 56-256 49-220 (264)
7 PRK14903 16S rRNA methyltransf 100.0 1.1E-41 2.3E-46 380.6 22.8 179 56-263 215-393 (431)
8 PRK14901 16S rRNA methyltransf 100.0 3.8E-40 8.2E-45 368.8 20.0 201 17-255 204-404 (434)
9 TIGR00563 rsmB ribosomal RNA s 100.0 2.6E-39 5.7E-44 361.2 21.5 171 56-255 216-388 (426)
10 PRK14902 16S rRNA methyltransf 100.0 5E-38 1.1E-42 352.6 22.9 203 17-263 204-406 (444)
11 PRK14904 16S rRNA methyltransf 100.0 4.7E-38 1E-42 352.9 21.8 178 55-263 227-404 (445)
12 PRK10901 16S rRNA methyltransf 100.0 1.3E-36 2.7E-41 339.8 21.6 197 16-255 196-392 (427)
13 KOG2360 Proliferation-associat 100.0 1.6E-29 3.4E-34 270.1 12.3 180 54-261 189-370 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.6 2.1E-14 4.7E-19 159.5 14.5 188 17-265 180-371 (396)
15 COG2242 CobL Precorrin-6B meth 99.5 1.2E-13 2.7E-18 137.3 14.9 139 69-266 25-164 (187)
16 COG1092 Predicted SAM-dependen 99.5 7.9E-14 1.7E-18 153.9 13.3 168 54-264 196-367 (393)
17 PF10672 Methyltrans_SAM: S-ad 99.4 6.5E-13 1.4E-17 141.5 9.6 162 17-243 83-246 (286)
18 PRK00377 cbiT cobalt-precorrin 99.4 7.4E-12 1.6E-16 126.3 14.5 140 69-264 31-171 (198)
19 PRK11783 rlmL 23S rRNA m(2)G24 99.4 5.1E-12 1.1E-16 150.1 15.4 183 17-265 498-682 (702)
20 TIGR00537 hemK_rel_arch HemK-r 99.4 2E-11 4.3E-16 121.0 16.6 156 68-262 9-164 (179)
21 TIGR01177 conserved hypothetic 99.3 3.4E-11 7.4E-16 130.9 15.1 131 64-239 162-298 (329)
22 PF12847 Methyltransf_18: Meth 99.3 6.3E-11 1.4E-15 107.2 13.3 110 78-236 1-112 (112)
23 PRK14967 putative methyltransf 99.3 1.3E-10 2.8E-15 119.5 17.1 147 75-261 33-182 (223)
24 PF13659 Methyltransf_26: Meth 99.3 1.4E-11 3E-16 112.6 8.9 116 79-237 1-117 (117)
25 TIGR03704 PrmC_rel_meth putati 99.2 1.1E-10 2.5E-15 122.4 15.7 147 78-260 86-237 (251)
26 PTZ00146 fibrillarin; Provisio 99.2 2E-10 4.3E-15 122.5 14.6 108 74-234 128-236 (293)
27 PRK07402 precorrin-6B methylas 99.2 2.8E-10 6E-15 114.5 14.1 144 61-263 23-168 (196)
28 PF08704 GCD14: tRNA methyltra 99.2 1.7E-10 3.6E-15 120.8 12.8 159 54-283 18-181 (247)
29 TIGR03533 L3_gln_methyl protei 99.2 1E-09 2.2E-14 117.4 18.2 143 76-255 119-266 (284)
30 PRK04266 fibrillarin; Provisio 99.2 3.8E-10 8.3E-15 116.8 14.4 136 74-264 68-209 (226)
31 TIGR03534 RF_mod_PrmC protein- 99.2 7.1E-10 1.5E-14 114.6 15.8 143 78-255 87-233 (251)
32 PRK08287 cobalt-precorrin-6Y C 99.1 3.7E-10 8E-15 112.7 13.0 126 70-255 23-148 (187)
33 PF05175 MTS: Methyltransferas 99.1 2.3E-10 5.1E-15 112.9 10.8 144 65-262 18-161 (170)
34 COG2226 UbiE Methylase involve 99.1 2.2E-10 4.9E-15 119.1 10.9 119 74-246 47-165 (238)
35 PF01209 Ubie_methyltran: ubiE 99.1 1.3E-10 2.7E-15 120.9 8.9 129 72-254 41-169 (233)
36 TIGR00080 pimt protein-L-isoas 99.1 5.3E-10 1.2E-14 114.3 12.9 106 72-234 71-176 (215)
37 TIGR00138 gidB 16S rRNA methyl 99.1 1.6E-09 3.5E-14 108.4 15.3 157 46-263 3-167 (181)
38 PRK14968 putative methyltransf 99.1 3.7E-09 8.1E-14 104.2 16.8 146 73-255 18-165 (188)
39 PRK09328 N5-glutamine S-adenos 99.1 3.2E-09 6.9E-14 111.6 16.9 146 75-255 105-254 (275)
40 PRK00107 gidB 16S rRNA methylt 99.1 3.8E-09 8.3E-14 106.4 16.3 121 77-258 44-164 (187)
41 PF01135 PCMT: Protein-L-isoas 99.1 7.1E-10 1.5E-14 113.6 11.0 106 72-234 66-171 (209)
42 PRK11805 N5-glutamine S-adenos 99.1 1.6E-09 3.5E-14 117.0 14.3 140 79-255 134-278 (307)
43 TIGR02469 CbiT precorrin-6Y C5 99.0 3.6E-09 7.9E-14 96.8 13.6 109 73-235 14-122 (124)
44 TIGR00536 hemK_fam HemK family 99.0 5.9E-09 1.3E-13 111.2 16.8 139 78-252 114-257 (284)
45 PRK13942 protein-L-isoaspartat 99.0 1.9E-09 4E-14 110.4 12.1 84 72-184 70-153 (212)
46 PRK00121 trmB tRNA (guanine-N( 99.0 2.1E-09 4.5E-14 109.2 12.0 127 78-252 40-167 (202)
47 COG2519 GCD14 tRNA(1-methylade 99.0 2.9E-09 6.4E-14 110.6 11.9 138 55-255 73-212 (256)
48 COG2518 Pcm Protein-L-isoaspar 99.0 3.7E-09 8E-14 107.5 11.7 105 70-234 64-168 (209)
49 TIGR00438 rrmJ cell division p 99.0 9.3E-09 2E-13 102.8 14.1 118 75-235 29-146 (188)
50 PRK03522 rumB 23S rRNA methylu 99.0 3.1E-09 6.7E-14 115.1 11.4 85 75-190 170-254 (315)
51 PRK13944 protein-L-isoaspartat 99.0 6.9E-09 1.5E-13 105.6 12.9 106 72-234 66-172 (205)
52 TIGR02752 MenG_heptapren 2-hep 98.9 7.4E-09 1.6E-13 106.2 12.7 112 73-235 40-151 (231)
53 PF13847 Methyltransf_31: Meth 98.9 8.1E-09 1.7E-13 99.5 12.1 111 77-237 2-112 (152)
54 TIGR00479 rumA 23S rRNA (uraci 98.9 9.2E-09 2E-13 115.8 14.3 110 74-238 288-398 (431)
55 PRK14966 unknown domain/N5-glu 98.9 2.1E-08 4.5E-13 111.8 15.9 145 76-255 249-397 (423)
56 PRK00312 pcm protein-L-isoaspa 98.9 1.2E-08 2.7E-13 103.7 12.9 105 72-236 72-176 (212)
57 PRK13168 rumA 23S rRNA m(5)U19 98.9 7.8E-09 1.7E-13 117.0 12.0 87 74-188 293-379 (443)
58 PRK11873 arsM arsenite S-adeno 98.9 1.3E-08 2.7E-13 107.5 12.8 116 71-237 70-185 (272)
59 COG4123 Predicted O-methyltran 98.9 1.4E-08 3.1E-13 106.0 12.0 154 66-255 32-186 (248)
60 PLN02233 ubiquinone biosynthes 98.8 2.3E-08 5E-13 105.6 12.8 116 72-238 67-185 (261)
61 PRK11188 rrmJ 23S rRNA methylt 98.8 3.7E-08 8E-13 100.8 13.2 117 76-235 49-165 (209)
62 PRK09489 rsmC 16S ribosomal RN 98.8 7.1E-08 1.5E-12 105.9 15.9 129 64-242 182-310 (342)
63 COG2890 HemK Methylase of poly 98.8 8.6E-08 1.9E-12 102.5 16.1 142 81-263 113-261 (280)
64 COG2263 Predicted RNA methylas 98.8 9.5E-08 2.1E-12 95.6 15.2 127 73-261 40-166 (198)
65 PRK15001 SAM-dependent 23S rib 98.8 1E-07 2.2E-12 105.8 16.6 135 56-238 204-343 (378)
66 TIGR00091 tRNA (guanine-N(7)-) 98.8 1.8E-08 4E-13 101.5 9.8 117 78-235 16-132 (194)
67 PRK01544 bifunctional N5-gluta 98.8 8.8E-08 1.9E-12 110.2 15.5 143 78-255 138-285 (506)
68 PF02475 Met_10: Met-10+ like- 98.8 2.1E-08 4.6E-13 102.1 9.1 101 76-233 99-200 (200)
69 COG1041 Predicted DNA modifica 98.8 3.6E-08 7.7E-13 107.0 10.6 126 66-236 179-311 (347)
70 PRK13943 protein-L-isoaspartat 98.7 7.3E-08 1.6E-12 104.9 12.9 105 73-234 75-179 (322)
71 PRK08317 hypothetical protein; 98.7 1.8E-07 3.8E-12 95.0 13.9 129 73-253 14-146 (241)
72 PRK14121 tRNA (guanine-N(7)-)- 98.7 9.7E-08 2.1E-12 105.8 12.8 119 76-238 120-238 (390)
73 COG2520 Predicted methyltransf 98.7 1.1E-07 2.4E-12 103.6 12.9 131 76-263 186-320 (341)
74 COG2265 TrmA SAM-dependent met 98.7 5.6E-08 1.2E-12 109.5 10.9 90 72-190 287-376 (432)
75 PLN02244 tocopherol O-methyltr 98.7 1.5E-07 3.2E-12 103.1 13.8 108 77-237 117-225 (340)
76 PLN02396 hexaprenyldihydroxybe 98.7 2.4E-07 5.1E-12 100.9 15.0 147 75-281 128-301 (322)
77 TIGR02085 meth_trns_rumB 23S r 98.7 9.5E-08 2.1E-12 106.0 11.4 82 75-187 230-311 (374)
78 PRK11036 putative S-adenosyl-L 98.7 1.7E-07 3.7E-12 98.2 12.7 108 77-237 43-151 (255)
79 PRK00517 prmA ribosomal protei 98.7 3E-07 6.5E-12 96.4 14.4 119 76-263 117-236 (250)
80 PRK15451 tRNA cmo(5)U34 methyl 98.7 1.8E-07 3.9E-12 97.8 12.5 110 76-236 54-165 (247)
81 PRK10909 rsmD 16S rRNA m(2)G96 98.7 1.6E-07 3.5E-12 95.6 11.6 80 77-186 52-131 (199)
82 PRK11207 tellurite resistance 98.7 2.8E-07 6.1E-12 93.2 13.0 109 73-234 25-133 (197)
83 KOG1540 Ubiquinone biosynthesi 98.6 2.9E-07 6.2E-12 95.7 13.0 134 73-255 95-231 (296)
84 PF03602 Cons_hypoth95: Conser 98.6 6.3E-08 1.4E-12 97.3 8.0 82 78-186 42-124 (183)
85 PLN02781 Probable caffeoyl-CoA 98.6 2.7E-07 5.9E-12 96.1 12.5 119 69-236 59-179 (234)
86 PLN02476 O-methyltransferase 98.6 1.7E-07 3.8E-12 99.8 11.2 148 39-236 80-229 (278)
87 TIGR00406 prmA ribosomal prote 98.6 4.8E-07 1E-11 96.9 14.5 124 76-263 157-281 (288)
88 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.5E-07 3.2E-12 103.8 10.7 101 73-190 192-292 (352)
89 KOG2904 Predicted methyltransf 98.6 3.3E-07 7.1E-12 96.0 12.3 147 78-252 148-300 (328)
90 PRK10258 biotin biosynthesis p 98.6 4.1E-07 9E-12 94.8 12.6 116 63-237 27-142 (251)
91 PRK01683 trans-aconitate 2-met 98.6 2.7E-07 5.8E-12 96.5 10.9 105 73-235 26-130 (258)
92 PRK15068 tRNA mo(5)U34 methylt 98.6 1.1E-06 2.4E-11 95.8 15.8 109 74-236 118-227 (322)
93 KOG2915 tRNA(1-methyladenosine 98.6 6.8E-07 1.5E-11 93.6 13.0 149 55-263 84-236 (314)
94 COG2264 PrmA Ribosomal protein 98.6 7.7E-07 1.7E-11 95.4 13.7 127 76-263 160-286 (300)
95 PF08241 Methyltransf_11: Meth 98.6 1.8E-07 4E-12 81.0 7.4 95 83-233 1-95 (95)
96 COG0293 FtsJ 23S rRNA methylas 98.5 2.9E-07 6.2E-12 93.7 9.6 133 76-254 43-175 (205)
97 TIGR00452 methyltransferase, p 98.5 1E-06 2.3E-11 95.6 14.6 112 74-239 117-229 (314)
98 COG2813 RsmC 16S RNA G1207 met 98.5 8.6E-07 1.9E-11 94.8 13.4 154 54-262 132-287 (300)
99 TIGR00308 TRM1 tRNA(guanine-26 98.5 2.1E-07 4.6E-12 103.1 9.2 104 79-237 45-148 (374)
100 TIGR00740 methyltransferase, p 98.5 9.5E-07 2.1E-11 91.6 13.3 108 77-235 52-161 (239)
101 PF02353 CMAS: Mycolic acid cy 98.5 4.9E-07 1.1E-11 96.4 11.1 115 70-238 54-169 (273)
102 PTZ00098 phosphoethanolamine N 98.5 6.5E-07 1.4E-11 94.7 12.0 110 73-236 47-157 (263)
103 cd02440 AdoMet_MTases S-adenos 98.5 9.3E-07 2E-11 75.8 10.9 103 81-234 1-103 (107)
104 PRK14103 trans-aconitate 2-met 98.5 4.1E-07 8.9E-12 95.3 10.3 101 74-234 25-125 (255)
105 PF06325 PrmA: Ribosomal prote 98.5 6E-07 1.3E-11 96.6 11.8 123 76-263 159-281 (295)
106 PRK04338 N(2),N(2)-dimethylgua 98.5 3.2E-07 6.9E-12 102.1 10.0 101 78-234 57-157 (382)
107 PRK05031 tRNA (uracil-5-)-meth 98.5 3.7E-07 8.1E-12 100.9 10.4 60 79-149 207-266 (362)
108 COG2227 UbiG 2-polyprenyl-3-me 98.5 2.3E-07 5E-12 96.0 8.0 106 77-237 58-163 (243)
109 PF01728 FtsJ: FtsJ-like methy 98.5 2E-07 4.3E-12 92.5 7.4 120 75-237 20-141 (181)
110 PF13649 Methyltransf_25: Meth 98.5 3.1E-07 6.7E-12 82.4 7.8 101 82-229 1-101 (101)
111 PLN02336 phosphoethanolamine N 98.5 1.5E-06 3.3E-11 99.0 15.2 128 74-255 262-389 (475)
112 PHA03412 putative methyltransf 98.5 6.9E-07 1.5E-11 92.9 11.1 114 77-233 48-161 (241)
113 PRK00216 ubiE ubiquinone/menaq 98.5 2.5E-06 5.5E-11 87.0 14.6 115 73-238 46-161 (239)
114 TIGR00477 tehB tellurite resis 98.5 1.4E-06 2.9E-11 88.1 12.5 106 74-234 26-132 (195)
115 PLN02672 methionine S-methyltr 98.5 2.9E-06 6.3E-11 104.3 16.7 145 79-255 119-295 (1082)
116 TIGR02143 trmA_only tRNA (urac 98.4 8.6E-07 1.9E-11 97.7 10.9 59 80-149 199-257 (353)
117 PF01170 UPF0020: Putative RNA 98.4 1.3E-06 2.8E-11 87.4 11.2 128 72-236 22-150 (179)
118 PLN03075 nicotianamine synthas 98.4 1.6E-06 3.5E-11 93.1 12.5 109 78-235 123-233 (296)
119 PF02384 N6_Mtase: N-6 DNA Met 98.4 9.7E-07 2.1E-11 95.0 10.1 159 56-236 24-184 (311)
120 PF01596 Methyltransf_3: O-met 98.4 2.2E-07 4.7E-12 95.1 4.7 148 40-236 7-156 (205)
121 TIGR00095 RNA methyltransferas 98.4 1.6E-06 3.4E-11 87.6 10.6 83 78-187 49-132 (189)
122 COG0742 N6-adenine-specific me 98.4 2E-06 4.4E-11 86.4 11.1 81 78-186 43-124 (187)
123 PRK11705 cyclopropane fatty ac 98.4 1.8E-06 3.9E-11 96.2 11.4 110 72-238 161-270 (383)
124 PRK00811 spermidine synthase; 98.4 3.9E-06 8.6E-11 89.8 13.4 133 71-253 70-207 (283)
125 COG2230 Cfa Cyclopropane fatty 98.4 2.4E-06 5.1E-11 91.1 11.1 114 70-237 64-178 (283)
126 PHA03411 putative methyltransf 98.3 7.5E-06 1.6E-10 87.1 14.1 141 74-255 60-206 (279)
127 PRK05134 bifunctional 3-demeth 98.3 8.2E-06 1.8E-10 84.0 14.1 110 75-238 45-154 (233)
128 PRK12335 tellurite resistance 98.3 4.7E-06 1E-10 89.2 12.6 102 78-234 120-222 (287)
129 PRK04457 spermidine synthase; 98.3 6.2E-06 1.3E-10 87.4 13.3 115 77-238 65-180 (262)
130 PLN02490 MPBQ/MSBQ methyltrans 98.3 7E-06 1.5E-10 90.1 13.6 103 77-234 112-214 (340)
131 COG4122 Predicted O-methyltran 98.3 3E-06 6.5E-11 87.4 10.0 123 64-238 45-169 (219)
132 PF09445 Methyltransf_15: RNA 98.3 2.1E-06 4.5E-11 84.9 8.4 83 80-191 1-84 (163)
133 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 6.3E-06 1.4E-10 83.2 11.8 110 76-238 37-146 (223)
134 PRK06922 hypothetical protein; 98.3 7.5E-06 1.6E-10 95.7 13.6 128 73-239 413-541 (677)
135 smart00650 rADc Ribosomal RNA 98.3 6.6E-06 1.4E-10 81.0 11.2 80 73-186 8-87 (169)
136 TIGR02716 C20_methyl_CrtF C-20 98.2 1.1E-05 2.3E-10 87.0 13.4 118 73-243 144-262 (306)
137 smart00828 PKS_MT Methyltransf 98.2 1.8E-05 3.9E-10 80.8 14.4 103 81-236 2-105 (224)
138 TIGR00006 S-adenosyl-methyltra 98.2 1.4E-05 3.1E-10 86.3 13.8 91 73-189 15-105 (305)
139 PRK03612 spermidine synthase; 98.2 7.4E-06 1.6E-10 94.8 12.4 143 77-269 296-448 (521)
140 PF01269 Fibrillarin: Fibrilla 98.2 7.6E-06 1.6E-10 84.2 11.0 137 74-263 69-210 (229)
141 PRK01581 speE spermidine synth 98.2 1.1E-05 2.3E-10 89.0 12.5 137 70-255 143-289 (374)
142 TIGR00417 speE spermidine synt 98.2 1.4E-05 3.1E-10 84.9 13.0 131 72-252 67-201 (270)
143 TIGR01983 UbiG ubiquinone bios 98.2 1.1E-05 2.4E-10 82.2 11.2 108 77-237 44-151 (224)
144 TIGR02072 BioC biotin biosynth 98.2 1E-05 2.2E-10 82.4 10.3 102 78-235 34-135 (240)
145 KOG1596 Fibrillarin and relate 98.1 7.8E-06 1.7E-10 84.3 9.0 126 75-253 153-282 (317)
146 KOG4589 Cell division protein 98.1 2.1E-05 4.5E-10 78.7 10.7 132 76-253 67-199 (232)
147 TIGR02021 BchM-ChlM magnesium 98.1 3.5E-05 7.6E-10 78.8 12.3 62 76-148 53-115 (219)
148 PF02390 Methyltransf_4: Putat 98.1 1.8E-05 3.9E-10 80.4 9.9 135 81-262 20-157 (195)
149 COG2521 Predicted archaeal met 98.0 4.7E-06 1E-10 85.8 5.0 140 74-263 130-275 (287)
150 TIGR03438 probable methyltrans 98.0 6.7E-05 1.5E-09 81.0 14.1 122 77-250 62-189 (301)
151 PF13489 Methyltransf_23: Meth 98.0 1.6E-05 3.4E-10 75.9 8.3 99 76-238 20-118 (161)
152 PLN02336 phosphoethanolamine N 98.0 3.9E-05 8.4E-10 87.6 12.8 110 73-235 32-142 (475)
153 PF05401 NodS: Nodulation prot 98.0 3.4E-05 7.3E-10 78.2 10.6 140 74-268 39-185 (201)
154 PRK00050 16S rRNA m(4)C1402 me 98.0 8.7E-06 1.9E-10 87.7 6.9 90 73-189 14-103 (296)
155 PF01795 Methyltransf_5: MraW 98.0 6E-06 1.3E-10 89.2 5.5 195 73-300 15-299 (310)
156 PLN02589 caffeoyl-CoA O-methyl 98.0 2.9E-05 6.4E-10 81.7 10.4 122 65-234 66-189 (247)
157 PF08242 Methyltransf_12: Meth 98.0 3.4E-06 7.4E-11 75.1 2.4 99 83-231 1-99 (99)
158 PRK11088 rrmA 23S rRNA methylt 98.0 2.6E-05 5.7E-10 82.7 9.5 98 77-235 84-181 (272)
159 PRK14896 ksgA 16S ribosomal RN 98.0 1.9E-05 4.1E-10 83.4 8.1 79 73-187 24-102 (258)
160 COG0275 Predicted S-adenosylme 97.9 0.00018 3.8E-09 77.1 14.9 194 72-299 17-300 (314)
161 COG4076 Predicted RNA methylas 97.9 9.6E-06 2.1E-10 81.0 5.1 99 80-232 34-132 (252)
162 PF03848 TehB: Tellurite resis 97.9 9E-05 1.9E-09 75.2 12.0 107 75-235 27-133 (192)
163 TIGR03840 TMPT_Se_Te thiopurin 97.9 6.4E-05 1.4E-09 77.4 11.0 110 77-238 33-155 (213)
164 PTZ00338 dimethyladenosine tra 97.9 2.7E-05 5.9E-10 83.9 8.6 84 72-189 30-114 (294)
165 COG0220 Predicted S-adenosylme 97.9 5.2E-05 1.1E-09 78.9 9.7 123 80-249 50-172 (227)
166 PLN02585 magnesium protoporphy 97.9 0.00023 4.9E-09 77.6 14.8 46 78-134 144-189 (315)
167 smart00138 MeTrc Methyltransfe 97.9 0.00012 2.5E-09 77.8 12.2 113 77-234 98-241 (264)
168 KOG1271 Methyltransferases [Ge 97.9 6.3E-05 1.4E-09 75.1 9.4 114 80-242 69-188 (227)
169 KOG1099 SAM-dependent methyltr 97.9 2E-05 4.3E-10 81.0 6.0 131 80-253 43-178 (294)
170 KOG1270 Methyltransferases [Co 97.9 3.4E-05 7.5E-10 80.9 7.5 100 79-235 90-195 (282)
171 PLN02366 spermidine synthase 97.8 0.00033 7.1E-09 76.2 13.9 111 77-233 90-204 (308)
172 TIGR02987 met_A_Alw26 type II 97.8 0.00015 3.2E-09 84.1 11.7 159 78-253 31-215 (524)
173 KOG1663 O-methyltransferase [S 97.8 0.00018 3.9E-09 74.3 10.7 147 39-234 33-182 (237)
174 COG4106 Tam Trans-aconitate me 97.7 8.3E-05 1.8E-09 76.1 7.9 102 75-234 27-128 (257)
175 KOG2671 Putative RNA methylase 97.7 5.2E-05 1.1E-09 81.9 6.2 145 58-233 188-352 (421)
176 PRK07580 Mg-protoporphyrin IX 97.7 0.00035 7.6E-09 71.4 12.0 59 76-145 61-120 (230)
177 PRK10742 putative methyltransf 97.7 0.00012 2.6E-09 76.9 8.2 87 69-186 77-174 (250)
178 COG0286 HsdM Type I restrictio 97.7 0.00091 2E-08 77.1 15.9 175 58-253 166-346 (489)
179 PLN02823 spermine synthase 97.6 0.00045 9.8E-09 75.9 12.4 136 70-252 96-237 (336)
180 PRK00274 ksgA 16S ribosomal RN 97.6 0.00014 2.9E-09 77.5 8.0 79 73-186 37-115 (272)
181 PF03291 Pox_MCEL: mRNA cappin 97.6 0.00032 6.9E-09 77.0 10.8 139 43-238 37-189 (331)
182 PRK06202 hypothetical protein; 97.6 0.00038 8.3E-09 71.9 10.7 110 74-234 56-165 (232)
183 KOG2187 tRNA uracil-5-methyltr 97.6 0.00014 3E-09 82.5 7.7 114 73-239 378-493 (534)
184 PRK05785 hypothetical protein; 97.6 0.00038 8.1E-09 72.2 10.4 92 77-229 50-141 (226)
185 PRK11727 23S rRNA mA1618 methy 97.6 0.00078 1.7E-08 73.6 13.2 154 78-263 114-293 (321)
186 KOG1098 Putative SAM-dependent 97.6 4.6E-05 1E-09 87.2 3.7 131 76-252 42-172 (780)
187 COG1889 NOP1 Fibrillarin-like 97.6 0.001 2.2E-08 67.7 12.7 137 75-265 73-214 (231)
188 TIGR03587 Pse_Me-ase pseudamin 97.5 0.00038 8.3E-09 71.2 9.6 60 75-148 40-99 (204)
189 PRK13255 thiopurine S-methyltr 97.5 0.00081 1.8E-08 69.6 11.8 111 76-238 35-158 (218)
190 COG3963 Phospholipid N-methylt 97.5 0.001 2.2E-08 65.9 11.1 144 42-237 11-158 (194)
191 PF02527 GidB: rRNA small subu 97.5 0.00052 1.1E-08 69.3 9.5 97 81-234 51-147 (184)
192 KOG1661 Protein-L-isoaspartate 97.4 0.00048 1E-08 70.3 8.6 104 73-233 75-191 (237)
193 PRK01544 bifunctional N5-gluta 97.4 0.00058 1.3E-08 79.0 10.3 118 78-237 347-464 (506)
194 PF08003 Methyltransf_9: Prote 97.4 0.0013 2.8E-08 70.9 11.7 107 78-238 115-222 (315)
195 TIGR00755 ksgA dimethyladenosi 97.4 0.00054 1.2E-08 72.0 8.6 65 73-150 24-88 (253)
196 PRK11760 putative 23S rRNA C24 97.4 0.00044 9.5E-09 75.7 7.9 74 76-188 209-282 (357)
197 KOG2899 Predicted methyltransf 97.4 0.00066 1.4E-08 70.7 8.6 47 78-133 58-104 (288)
198 COG0030 KsgA Dimethyladenosine 97.2 0.0013 2.8E-08 69.8 9.1 85 71-188 23-107 (259)
199 PF01564 Spermine_synth: Sperm 97.2 0.00094 2E-08 70.3 7.8 134 70-253 69-207 (246)
200 COG0116 Predicted N6-adenine-s 97.1 0.0046 9.9E-08 68.7 12.6 128 72-235 185-344 (381)
201 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0051 1.1E-07 74.0 14.1 90 77-186 189-313 (702)
202 PF05185 PRMT5: PRMT5 arginine 97.1 0.0018 3.8E-08 73.9 9.0 126 79-251 187-315 (448)
203 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0018 3.9E-08 72.3 8.8 104 79-237 50-155 (377)
204 COG0357 GidB Predicted S-adeno 97.0 0.0025 5.3E-08 65.9 9.0 133 43-232 23-165 (215)
205 PF01861 DUF43: Protein of unk 97.0 0.0042 9E-08 65.0 10.3 134 78-270 44-180 (243)
206 PF07021 MetW: Methionine bios 97.0 0.0034 7.3E-08 63.7 9.2 71 76-182 11-81 (193)
207 KOG4300 Predicted methyltransf 97.0 0.0033 7.2E-08 64.2 8.9 103 79-234 77-181 (252)
208 KOG3420 Predicted RNA methylas 96.9 0.00069 1.5E-08 65.6 3.6 79 78-191 48-126 (185)
209 PF05219 DREV: DREV methyltran 96.9 0.0033 7.1E-08 66.4 8.9 94 78-234 94-187 (265)
210 KOG1541 Predicted protein carb 96.9 0.0061 1.3E-07 62.9 9.8 142 58-253 28-174 (270)
211 TIGR00478 tly hemolysin TlyA f 96.8 0.002 4.4E-08 67.2 5.9 39 77-125 74-112 (228)
212 PF12147 Methyltransf_20: Puta 96.7 0.016 3.5E-07 62.2 12.2 132 78-255 135-267 (311)
213 PF00891 Methyltransf_2: O-met 96.7 0.0083 1.8E-07 62.3 9.9 115 73-247 95-211 (241)
214 KOG2730 Methylase [General fun 96.6 0.0017 3.6E-08 66.9 3.5 90 78-195 94-184 (263)
215 COG0421 SpeE Spermidine syntha 96.5 0.01 2.2E-07 63.9 8.8 121 69-237 68-192 (282)
216 PF05724 TPMT: Thiopurine S-me 96.4 0.011 2.4E-07 61.3 8.5 114 75-239 34-159 (218)
217 PRK13256 thiopurine S-methyltr 96.4 0.033 7.2E-07 58.1 11.6 113 76-237 41-165 (226)
218 KOG0820 Ribosomal RNA adenine 96.2 0.017 3.6E-07 61.4 8.5 81 72-186 52-133 (315)
219 cd00315 Cyt_C5_DNA_methylase C 96.2 0.0083 1.8E-07 64.1 6.3 79 81-194 2-80 (275)
220 TIGR02081 metW methionine bios 96.2 0.017 3.7E-07 58.0 8.2 54 77-147 12-65 (194)
221 COG1867 TRM1 N2,N2-dimethylgua 96.2 0.013 2.8E-07 64.7 7.6 120 79-255 53-173 (380)
222 KOG1975 mRNA cap methyltransfe 96.2 0.017 3.7E-07 62.6 8.4 137 67-254 108-250 (389)
223 PF00398 RrnaAD: Ribosomal RNA 96.1 0.012 2.6E-07 62.4 6.8 66 72-150 24-89 (262)
224 KOG3010 Methyltransferase [Gen 96.1 0.022 4.9E-07 59.6 8.5 127 75-255 29-157 (261)
225 KOG3191 Predicted N6-DNA-methy 96.0 0.18 3.9E-06 51.0 14.2 143 79-258 44-188 (209)
226 TIGR00497 hsdM type I restrict 96.0 0.038 8.2E-07 64.0 10.8 153 56-232 193-352 (501)
227 PLN02232 ubiquinone biosynthes 96.0 0.02 4.4E-07 56.1 7.3 81 115-238 1-84 (160)
228 TIGR01444 fkbM_fam methyltrans 95.9 0.027 5.9E-07 53.2 7.5 58 81-147 1-58 (143)
229 PF04816 DUF633: Family of unk 95.8 0.19 4.1E-06 51.8 13.7 120 82-262 1-121 (205)
230 PF10294 Methyltransf_16: Puta 95.8 0.039 8.5E-07 54.9 8.5 59 76-144 43-104 (173)
231 KOG1253 tRNA methyltransferase 95.7 0.0092 2E-07 67.7 4.0 113 73-237 104-217 (525)
232 COG3897 Predicted methyltransf 95.6 0.024 5.2E-07 57.7 6.3 58 78-146 79-136 (218)
233 COG1189 Predicted rRNA methyla 95.6 0.035 7.6E-07 58.1 7.5 38 78-125 79-116 (245)
234 KOG2361 Predicted methyltransf 95.4 0.038 8.2E-07 57.9 7.1 108 81-234 74-182 (264)
235 PF13578 Methyltransf_24: Meth 95.4 0.012 2.5E-07 53.2 3.0 102 83-233 1-103 (106)
236 KOG1499 Protein arginine N-met 95.4 0.073 1.6E-06 58.5 9.4 112 77-239 59-171 (346)
237 TIGR03439 methyl_EasF probable 95.3 0.38 8.2E-06 52.8 14.5 135 76-252 74-211 (319)
238 COG4976 Predicted methyltransf 95.1 0.029 6.3E-07 58.4 5.0 129 75-263 122-263 (287)
239 PF08123 DOT1: Histone methyla 95.0 0.13 2.8E-06 52.9 9.4 51 73-132 37-87 (205)
240 KOG1500 Protein arginine N-met 94.9 0.14 3E-06 55.9 9.5 134 78-264 177-317 (517)
241 PF06080 DUF938: Protein of un 94.7 0.2 4.3E-06 51.6 9.9 134 79-254 26-164 (204)
242 PF04445 SAM_MT: Putative SAM- 94.6 0.069 1.5E-06 56.0 6.5 85 70-185 65-160 (234)
243 PF01739 CheR: CheR methyltran 94.6 0.24 5.1E-06 50.7 10.2 116 78-234 31-174 (196)
244 PRK01747 mnmC bifunctional tRN 94.5 0.46 1E-05 56.9 13.8 142 69-258 47-222 (662)
245 COG1064 AdhP Zn-dependent alco 94.3 0.18 3.9E-06 55.7 9.1 96 74-234 162-258 (339)
246 PRK10611 chemotaxis methyltran 94.3 0.33 7.2E-06 52.5 11.0 50 80-130 117-166 (287)
247 PF13679 Methyltransf_32: Meth 94.3 0.18 4E-06 48.3 8.1 56 75-135 22-77 (141)
248 PRK00536 speE spermidine synth 94.1 0.47 1E-05 50.7 11.5 121 70-255 65-189 (262)
249 PF00145 DNA_methylase: C-5 cy 93.9 0.22 4.7E-06 53.2 8.6 78 81-194 2-79 (335)
250 PF05891 Methyltransf_PK: AdoM 93.6 0.14 3E-06 53.1 6.1 106 78-234 55-160 (218)
251 KOG1227 Putative methyltransfe 93.0 0.052 1.1E-06 58.4 2.0 59 78-146 194-254 (351)
252 COG4262 Predicted spermidine s 92.9 0.69 1.5E-05 51.3 10.4 113 75-234 286-406 (508)
253 KOG0024 Sorbitol dehydrogenase 92.8 0.43 9.3E-06 52.2 8.5 112 73-238 164-276 (354)
254 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.7 0.43 9.3E-06 50.9 8.4 51 211-263 175-237 (256)
255 PF03059 NAS: Nicotianamine sy 92.6 0.77 1.7E-05 49.4 10.2 106 80-234 122-229 (276)
256 KOG2782 Putative SAM dependent 92.5 0.048 1E-06 56.3 1.0 95 73-190 38-132 (303)
257 KOG2078 tRNA modification enzy 92.1 0.069 1.5E-06 59.9 1.5 63 77-150 248-312 (495)
258 PF01555 N6_N4_Mtase: DNA meth 91.8 0.29 6.4E-06 49.1 5.7 42 76-128 189-230 (231)
259 COG0500 SmtA SAM-dependent met 91.4 3.5 7.6E-05 36.0 11.4 108 82-243 52-163 (257)
260 TIGR00675 dcm DNA-methyltransf 91.1 0.34 7.4E-06 52.9 5.6 77 82-194 1-77 (315)
261 PF05148 Methyltransf_8: Hypot 90.9 0.9 2E-05 47.1 8.1 120 64-256 58-178 (219)
262 COG1352 CheR Methylase of chem 90.9 1.5 3.2E-05 47.2 10.0 51 79-129 97-147 (268)
263 PF04989 CmcI: Cephalosporin h 90.6 0.34 7.4E-06 50.0 4.8 116 75-233 30-145 (206)
264 PF06962 rRNA_methylase: Putat 90.5 2.6 5.7E-05 41.0 10.4 109 113-254 1-113 (140)
265 PF05971 Methyltransf_10: Prot 90.0 1.7 3.7E-05 47.4 9.6 152 79-263 103-283 (299)
266 PRK11524 putative methyltransf 89.7 0.57 1.2E-05 50.3 5.8 45 77-132 207-251 (284)
267 COG4798 Predicted methyltransf 89.5 3.4 7.4E-05 42.5 10.7 40 72-119 42-81 (238)
268 PRK04148 hypothetical protein; 89.4 0.74 1.6E-05 44.5 5.7 42 78-130 16-58 (134)
269 PF10354 DUF2431: Domain of un 88.8 9.9 0.00021 37.9 13.4 79 173-263 72-150 (166)
270 COG1063 Tdh Threonine dehydrog 88.4 2.9 6.2E-05 46.3 10.3 103 76-235 166-269 (350)
271 COG2384 Predicted SAM-dependen 88.1 11 0.00024 39.4 13.5 120 77-255 15-135 (226)
272 COG2933 Predicted SAM-dependen 87.8 0.91 2E-05 48.4 5.5 70 76-184 209-278 (358)
273 PF10237 N6-adenineMlase: Prob 87.1 1.5 3.2E-05 43.7 6.4 51 175-251 85-135 (162)
274 COG0270 Dcm Site-specific DNA 86.9 1.9 4.2E-05 47.3 7.8 84 79-195 3-86 (328)
275 PF00107 ADH_zinc_N: Zinc-bind 86.5 1.4 3E-05 40.7 5.5 89 89-236 2-90 (130)
276 TIGR02822 adh_fam_2 zinc-bindi 85.9 6.6 0.00014 42.7 11.2 51 74-138 161-212 (329)
277 PF03141 Methyltransf_29: Puta 85.5 1.3 2.9E-05 51.0 5.7 160 19-239 48-223 (506)
278 PRK13699 putative methylase; P 85.4 1.6 3.6E-05 45.5 6.0 48 76-134 161-208 (227)
279 TIGR03451 mycoS_dep_FDH mycoth 85.2 4 8.6E-05 44.7 9.2 52 74-137 172-223 (358)
280 PRK09880 L-idonate 5-dehydroge 85.1 7.6 0.00016 42.3 11.3 52 75-138 166-217 (343)
281 KOG3115 Methyltransferase-like 84.6 3.6 7.9E-05 42.6 7.7 117 79-237 61-185 (249)
282 PF05430 Methyltransf_30: S-ad 83.7 1.4 3E-05 42.0 4.1 56 175-256 49-104 (124)
283 cd08230 glucose_DH Glucose deh 83.4 5.9 0.00013 43.2 9.6 48 76-137 170-221 (355)
284 PRK10458 DNA cytosine methylas 83.0 4 8.7E-05 47.2 8.2 99 78-192 87-185 (467)
285 cd08237 ribitol-5-phosphate_DH 82.7 7.9 0.00017 42.2 10.2 46 75-128 160-206 (341)
286 cd08281 liver_ADH_like1 Zinc-d 82.6 4.9 0.00011 44.3 8.6 52 74-137 187-238 (371)
287 PF09243 Rsm22: Mitochondrial 82.5 7.3 0.00016 41.8 9.6 47 80-134 35-81 (274)
288 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.3 0.0032 7E-08 67.7 -16.6 65 180-244 1-65 (283)
289 PRK11524 putative methyltransf 80.9 2.2 4.7E-05 45.9 4.8 58 174-238 25-82 (284)
290 PF11599 AviRa: RRNA methyltra 80.6 3 6.6E-05 43.4 5.5 48 78-132 51-98 (246)
291 PHA01634 hypothetical protein 80.0 6.9 0.00015 37.8 7.2 48 78-135 28-75 (156)
292 cd08254 hydroxyacyl_CoA_DH 6-h 79.5 12 0.00026 39.8 10.1 44 75-128 162-206 (338)
293 KOG3987 Uncharacterized conser 77.9 0.94 2E-05 46.8 0.9 38 79-127 113-150 (288)
294 COG1568 Predicted methyltransf 77.1 3.1 6.7E-05 44.9 4.4 156 53-263 126-286 (354)
295 PRK10309 galactitol-1-phosphat 75.8 14 0.00031 40.0 9.4 52 74-137 156-207 (347)
296 TIGR03201 dearomat_had 6-hydro 74.8 14 0.0003 40.3 9.0 50 74-137 162-212 (349)
297 PLN02740 Alcohol dehydrogenase 74.8 16 0.00034 40.6 9.6 53 74-138 194-246 (381)
298 TIGR03366 HpnZ_proposed putati 72.9 18 0.00039 38.2 9.1 52 74-137 116-167 (280)
299 TIGR02818 adh_III_F_hyde S-(hy 71.7 16 0.00034 40.4 8.6 51 74-137 181-232 (368)
300 PRK09424 pntA NAD(P) transhydr 71.4 34 0.00074 40.2 11.5 49 75-137 161-210 (509)
301 KOG3178 Hydroxyindole-O-methyl 70.7 14 0.00031 41.0 7.8 107 73-238 168-278 (342)
302 cd08239 THR_DH_like L-threonin 70.0 17 0.00037 39.1 8.3 52 74-137 159-210 (339)
303 TIGR01202 bchC 2-desacetyl-2-h 69.9 19 0.0004 38.8 8.5 42 77-127 143-185 (308)
304 cd08238 sorbose_phosphate_red 67.7 22 0.00049 39.9 8.9 50 74-130 171-222 (410)
305 PF03721 UDPG_MGDP_dh_N: UDP-g 67.2 34 0.00074 34.5 9.2 128 88-263 7-150 (185)
306 PLN03154 putative allyl alcoho 67.1 17 0.00037 39.9 7.6 52 74-138 154-207 (348)
307 PF01555 N6_N4_Mtase: DNA meth 66.4 11 0.00023 37.8 5.4 81 177-263 1-81 (231)
308 KOG0023 Alcohol dehydrogenase, 65.3 25 0.00054 39.0 8.1 60 75-148 178-239 (360)
309 PLN02827 Alcohol dehydrogenase 65.3 28 0.00061 38.6 9.0 52 74-137 189-240 (378)
310 PF13636 Nol1_Nop2_Fmu_2: pre- 64.7 7 0.00015 35.8 3.3 70 555-644 11-80 (102)
311 TIGR02825 B4_12hDH leukotriene 63.2 29 0.00063 37.2 8.4 50 74-137 134-185 (325)
312 cd08278 benzyl_alcohol_DH Benz 62.1 41 0.0009 36.9 9.5 46 74-128 182-228 (365)
313 KOG1709 Guanidinoacetate methy 61.6 53 0.0012 34.6 9.3 106 77-234 100-205 (271)
314 PRK12429 3-hydroxybutyrate deh 61.4 55 0.0012 33.3 9.7 61 79-148 4-64 (258)
315 PF03141 Methyltransf_29: Puta 59.7 17 0.00036 42.3 5.9 43 214-263 446-491 (506)
316 cd08277 liver_alcohol_DH_like 59.0 56 0.0012 35.9 9.8 52 74-137 180-231 (365)
317 cd05278 FDH_like Formaldehyde 59.0 37 0.0008 36.4 8.3 46 74-128 163-209 (347)
318 PRK13699 putative methylase; P 58.3 44 0.00095 34.9 8.4 71 174-255 18-88 (227)
319 PF03492 Methyltransf_7: SAM d 57.5 58 0.0012 36.1 9.5 44 79-122 17-67 (334)
320 KOG3045 Predicted RNA methylas 57.3 54 0.0012 35.5 8.7 111 79-264 181-292 (325)
321 PRK12939 short chain dehydroge 57.0 69 0.0015 32.4 9.5 61 79-148 7-67 (250)
322 PRK06181 short chain dehydroge 56.9 77 0.0017 32.6 10.0 59 81-148 3-61 (263)
323 cd08242 MDR_like Medium chain 56.4 1E+02 0.0022 32.8 11.0 51 74-137 151-201 (319)
324 PLN02668 indole-3-acetate carb 56.3 1.1E+02 0.0024 34.8 11.5 52 79-130 64-121 (386)
325 PF07091 FmrO: Ribosomal RNA m 56.1 36 0.00077 36.4 7.2 54 75-137 102-155 (251)
326 cd08300 alcohol_DH_class_III c 55.7 67 0.0014 35.3 9.7 52 74-137 182-233 (368)
327 cd08293 PTGR2 Prostaglandin re 55.1 49 0.0011 35.6 8.4 52 75-138 149-204 (345)
328 PRK07533 enoyl-(acyl carrier p 54.5 99 0.0022 32.1 10.4 133 78-234 9-147 (258)
329 PRK08594 enoyl-(acyl carrier p 54.4 89 0.0019 32.5 10.0 61 78-148 6-70 (257)
330 cd08236 sugar_DH NAD(P)-depend 54.1 52 0.0011 35.3 8.4 46 73-127 154-200 (343)
331 PF11899 DUF3419: Protein of u 53.6 19 0.00041 40.7 5.0 63 58-131 14-77 (380)
332 PF07669 Eco57I: Eco57I restri 53.5 51 0.0011 30.2 7.0 78 176-263 2-81 (106)
333 cd08283 FDH_like_1 Glutathione 53.5 22 0.00048 39.5 5.6 48 73-129 179-227 (386)
334 PRK15182 Vi polysaccharide bio 53.0 1.5E+02 0.0032 34.1 12.1 118 87-254 12-138 (425)
335 KOG1501 Arginine N-methyltrans 52.6 27 0.00059 40.1 5.9 58 81-148 69-127 (636)
336 PRK05599 hypothetical protein; 52.5 91 0.002 32.1 9.6 60 81-149 2-61 (246)
337 KOG1269 SAM-dependent methyltr 52.5 28 0.00061 39.1 6.1 111 68-232 100-212 (364)
338 cd08285 NADP_ADH NADP(H)-depen 52.5 69 0.0015 34.7 9.1 52 74-137 162-213 (351)
339 cd08234 threonine_DH_like L-th 51.9 1.1E+02 0.0024 32.6 10.5 47 73-127 154-200 (334)
340 TIGR02819 fdhA_non_GSH formald 51.3 74 0.0016 35.8 9.3 52 74-137 181-232 (393)
341 PRK08339 short chain dehydroge 51.1 2E+02 0.0044 29.9 12.1 63 79-149 8-70 (263)
342 cd08255 2-desacetyl-2-hydroxye 50.7 95 0.0021 32.1 9.5 47 73-128 92-139 (277)
343 cd08294 leukotriene_B4_DH_like 50.7 1.1E+02 0.0023 32.5 10.1 50 74-137 139-190 (329)
344 PF00106 adh_short: short chai 50.6 1.4E+02 0.0029 28.2 9.9 91 87-195 7-99 (167)
345 PF06859 Bin3: Bicoid-interact 50.6 13 0.00028 34.8 2.6 20 214-233 23-42 (110)
346 cd08301 alcohol_DH_plants Plan 50.1 84 0.0018 34.4 9.4 52 74-137 183-234 (369)
347 cd08295 double_bond_reductase_ 49.9 50 0.0011 35.7 7.5 52 74-138 147-200 (338)
348 PRK07326 short chain dehydroge 49.7 97 0.0021 31.2 9.2 60 79-148 6-65 (237)
349 PRK06194 hypothetical protein; 49.7 1.6E+02 0.0035 30.7 11.1 61 79-148 6-66 (287)
350 COG5459 Predicted rRNA methyla 49.6 24 0.00053 39.4 4.9 22 212-234 203-224 (484)
351 PRK00050 16S rRNA m(4)C1402 me 49.3 29 0.00063 37.9 5.4 69 215-300 216-284 (296)
352 PRK07666 fabG 3-ketoacyl-(acyl 49.1 1.3E+02 0.0029 30.3 10.1 61 79-148 7-67 (239)
353 PRK08340 glucose-1-dehydrogena 48.8 1.5E+02 0.0032 30.5 10.6 58 81-148 2-59 (259)
354 PRK08324 short chain dehydroge 48.0 79 0.0017 38.3 9.4 133 78-235 421-557 (681)
355 cd08232 idonate-5-DH L-idonate 47.0 97 0.0021 33.2 9.1 42 77-127 164-206 (339)
356 cd05285 sorbitol_DH Sorbitol d 47.0 1.5E+02 0.0033 31.9 10.7 48 73-128 157-204 (343)
357 PRK12937 short chain dehydroge 46.6 1.4E+02 0.0029 30.2 9.7 137 79-238 5-142 (245)
358 PRK06701 short chain dehydroge 46.5 1.3E+02 0.0029 31.9 10.0 135 78-236 45-182 (290)
359 PRK13394 3-hydroxybutyrate deh 46.0 2E+02 0.0044 29.2 11.0 61 79-148 7-67 (262)
360 PRK06079 enoyl-(acyl carrier p 45.7 1.7E+02 0.0038 30.1 10.5 131 79-235 7-143 (252)
361 PLN03209 translocon at the inn 45.1 4.1E+02 0.0089 31.9 14.4 68 73-148 74-149 (576)
362 PRK09242 tropinone reductase; 45.1 2E+02 0.0044 29.4 10.8 62 79-148 9-71 (257)
363 PRK06113 7-alpha-hydroxysteroi 44.9 2.1E+02 0.0045 29.3 10.9 61 79-148 11-71 (255)
364 PRK08415 enoyl-(acyl carrier p 43.9 2E+02 0.0043 30.4 10.8 133 79-235 5-143 (274)
365 TIGR03026 NDP-sugDHase nucleot 43.9 2.1E+02 0.0046 32.3 11.5 35 219-254 104-138 (411)
366 PRK08945 putative oxoacyl-(acy 43.4 2.1E+02 0.0047 29.0 10.7 63 76-146 9-71 (247)
367 PRK06949 short chain dehydroge 42.7 3.7E+02 0.0079 27.3 12.3 62 78-148 8-69 (258)
368 PRK06914 short chain dehydroge 42.2 1.7E+02 0.0037 30.4 9.8 60 81-148 5-65 (280)
369 PRK12829 short chain dehydroge 41.6 1E+02 0.0022 31.5 7.9 61 77-148 9-69 (264)
370 PRK08643 acetoin reductase; Va 41.4 2.2E+02 0.0048 29.0 10.4 60 80-148 3-62 (256)
371 KOG1331 Predicted methyltransf 41.3 46 0.001 36.2 5.3 99 77-234 44-143 (293)
372 PF02086 MethyltransfD12: D12 41.3 33 0.00072 35.6 4.3 43 78-131 20-62 (260)
373 PF07279 DUF1442: Protein of u 41.1 90 0.0019 32.8 7.2 70 69-146 33-105 (218)
374 PLN02514 cinnamyl-alcohol dehy 41.1 1.8E+02 0.0038 32.0 10.2 50 76-137 178-227 (357)
375 PLN02586 probable cinnamyl alc 40.8 1.5E+02 0.0032 32.7 9.5 50 76-137 181-230 (360)
376 cd00401 AdoHcyase S-adenosyl-L 40.4 1.3E+02 0.0027 34.6 9.0 42 77-128 200-242 (413)
377 PRK07063 short chain dehydroge 40.3 2.1E+02 0.0045 29.4 10.0 62 79-148 7-69 (260)
378 PRK05786 fabG 3-ketoacyl-(acyl 39.3 2.7E+02 0.0059 27.9 10.6 60 79-148 5-64 (238)
379 PRK07523 gluconate 5-dehydroge 39.1 3E+02 0.0065 28.1 11.0 62 78-148 9-70 (255)
380 PRK05867 short chain dehydroge 39.0 2.8E+02 0.006 28.4 10.7 61 79-148 9-69 (253)
381 COG0677 WecC UDP-N-acetyl-D-ma 38.9 74 0.0016 36.3 6.6 123 88-253 16-145 (436)
382 PRK07102 short chain dehydroge 38.8 2.6E+02 0.0057 28.3 10.4 61 81-149 3-63 (243)
383 PRK07576 short chain dehydroge 38.8 2.5E+02 0.0055 29.1 10.5 62 78-148 8-69 (264)
384 PRK07832 short chain dehydroge 37.8 1.6E+02 0.0034 30.6 8.8 56 86-148 6-61 (272)
385 PRK05717 oxidoreductase; Valid 37.6 2E+02 0.0043 29.5 9.4 58 79-148 10-67 (255)
386 cd08261 Zn_ADH7 Alcohol dehydr 37.6 1.6E+02 0.0034 31.6 9.0 45 73-127 154-199 (337)
387 TIGR01963 PHB_DH 3-hydroxybuty 37.5 3.3E+02 0.0071 27.5 10.9 59 81-148 3-61 (255)
388 PF04672 Methyltransf_19: S-ad 37.5 1.4E+02 0.0029 32.4 8.1 120 80-238 70-193 (267)
389 PF05050 Methyltransf_21: Meth 37.5 61 0.0013 30.6 5.2 40 84-130 1-42 (167)
390 PF02254 TrkA_N: TrkA-N domain 37.5 72 0.0016 28.7 5.4 48 87-149 4-52 (116)
391 cd05281 TDH Threonine dehydrog 37.4 1.3E+02 0.0028 32.4 8.3 45 75-128 160-205 (341)
392 PF11968 DUF3321: Putative met 37.4 60 0.0013 34.0 5.3 41 215-255 124-173 (219)
393 PRK06172 short chain dehydroge 37.4 3.5E+02 0.0076 27.5 11.2 61 79-148 7-67 (253)
394 PRK06505 enoyl-(acyl carrier p 37.0 2.6E+02 0.0057 29.3 10.4 61 79-148 7-68 (271)
395 PRK08085 gluconate 5-dehydroge 36.8 3.3E+02 0.0071 27.8 10.8 61 79-148 9-69 (254)
396 cd08233 butanediol_DH_like (2R 36.6 2E+02 0.0044 31.0 9.7 47 74-128 168-214 (351)
397 PRK06603 enoyl-(acyl carrier p 36.4 2.7E+02 0.0058 28.9 10.2 36 79-121 8-44 (260)
398 KOG3492 Ribosome biogenesis pr 36.2 1.1E+02 0.0025 30.3 6.6 121 501-644 10-135 (180)
399 PRK07478 short chain dehydroge 36.1 3.5E+02 0.0076 27.6 10.9 61 79-148 6-66 (254)
400 TIGR02415 23BDH acetoin reduct 36.1 3.1E+02 0.0067 27.8 10.5 54 87-148 7-60 (254)
401 cd08298 CAD2 Cinnamyl alcohol 35.9 3.3E+02 0.0071 28.9 11.0 45 74-127 163-207 (329)
402 PRK07454 short chain dehydroge 35.7 2.5E+02 0.0054 28.4 9.6 62 79-149 6-67 (241)
403 PRK07231 fabG 3-ketoacyl-(acyl 35.7 2.7E+02 0.0059 28.0 9.9 60 79-148 5-64 (251)
404 PRK08265 short chain dehydroge 35.6 3.1E+02 0.0066 28.3 10.5 58 79-148 6-63 (261)
405 PRK07904 short chain dehydroge 35.5 85 0.0018 32.6 6.3 67 76-149 5-72 (253)
406 cd08231 MDR_TM0436_like Hypoth 35.4 3.4E+02 0.0073 29.4 11.2 50 77-138 176-225 (361)
407 PLN02702 L-idonate 5-dehydroge 35.2 3E+02 0.0065 30.0 10.8 54 73-138 176-229 (364)
408 PRK10083 putative oxidoreducta 34.7 2.8E+02 0.006 29.6 10.3 53 74-137 156-208 (339)
409 cd08282 PFDH_like Pseudomonas 34.6 2.4E+02 0.0053 31.0 10.0 112 74-233 172-283 (375)
410 PRK12826 3-ketoacyl-(acyl-carr 34.4 4.4E+02 0.0096 26.4 11.3 61 79-148 6-66 (251)
411 COG4152 ABC-type uncharacteriz 34.4 69 0.0015 34.6 5.2 90 176-288 148-255 (300)
412 PRK06139 short chain dehydroge 34.3 3.6E+02 0.0078 29.5 11.2 61 79-148 7-67 (330)
413 PLN02178 cinnamyl-alcohol dehy 33.9 1.7E+02 0.0036 32.6 8.6 17 218-234 256-272 (375)
414 KOG1197 Predicted quinone oxid 33.9 79 0.0017 34.2 5.6 49 74-130 142-190 (336)
415 PRK07831 short chain dehydroge 33.3 4.9E+02 0.011 26.7 11.5 65 77-148 15-80 (262)
416 PRK06197 short chain dehydroge 32.7 4.4E+02 0.0096 27.9 11.4 64 78-149 15-79 (306)
417 PRK07984 enoyl-(acyl carrier p 31.9 3.8E+02 0.0082 28.0 10.5 35 79-120 6-41 (262)
418 COG0863 DNA modification methy 31.6 91 0.002 33.0 5.8 48 76-134 220-267 (302)
419 cd08286 FDH_like_ADH2 formalde 31.6 2.2E+02 0.0047 30.6 8.9 46 75-128 163-208 (345)
420 KOG2352 Predicted spermine/spe 31.5 70 0.0015 37.2 5.1 135 80-250 297-431 (482)
421 cd05279 Zn_ADH1 Liver alcohol 30.2 3.1E+02 0.0068 30.0 9.9 52 74-137 179-230 (365)
422 PRK06198 short chain dehydroge 30.2 4.8E+02 0.01 26.5 10.8 61 79-148 6-67 (260)
423 COG0604 Qor NADPH:quinone redu 29.7 3.5E+02 0.0076 29.7 10.1 51 74-138 138-190 (326)
424 PRK05876 short chain dehydroge 29.2 5.9E+02 0.013 26.7 11.5 61 79-148 6-66 (275)
425 PRK08159 enoyl-(acyl carrier p 29.2 3.8E+02 0.0082 28.1 10.0 133 79-235 10-148 (272)
426 PRK07889 enoyl-(acyl carrier p 29.0 2.3E+02 0.0049 29.4 8.2 36 78-120 6-42 (256)
427 cd08265 Zn_ADH3 Alcohol dehydr 28.9 3.5E+02 0.0076 29.9 10.1 52 74-137 199-250 (384)
428 cd08243 quinone_oxidoreductase 28.8 2.7E+02 0.0058 29.0 8.8 52 75-138 139-190 (320)
429 PRK07677 short chain dehydroge 28.5 5.4E+02 0.012 26.2 10.8 60 80-148 2-61 (252)
430 COG2961 ComJ Protein involved 28.4 1.7E+02 0.0037 31.5 6.9 124 77-255 88-211 (279)
431 cd08245 CAD Cinnamyl alcohol d 28.1 4.2E+02 0.0092 28.1 10.3 45 74-127 158-202 (330)
432 PRK12742 oxidoreductase; Provi 28.1 4.4E+02 0.0095 26.3 9.9 41 79-127 6-47 (237)
433 PRK06196 oxidoreductase; Provi 27.9 3.9E+02 0.0084 28.6 10.0 58 79-149 26-83 (315)
434 cd08284 FDH_like_2 Glutathione 27.8 3.1E+02 0.0067 29.3 9.2 47 74-128 163-209 (344)
435 cd08256 Zn_ADH2 Alcohol dehydr 27.7 3.3E+02 0.0071 29.4 9.5 48 73-128 169-216 (350)
436 PRK07890 short chain dehydroge 27.6 5.2E+02 0.011 26.2 10.5 62 78-148 4-65 (258)
437 PRK06484 short chain dehydroge 27.5 4E+02 0.0086 30.7 10.6 132 78-236 268-401 (520)
438 PF13561 adh_short_C2: Enoyl-( 27.4 1.3E+02 0.0029 30.6 6.0 125 89-235 5-133 (241)
439 PRK05650 short chain dehydroge 27.3 6.1E+02 0.013 26.1 11.1 59 81-148 2-60 (270)
440 PRK05875 short chain dehydroge 27.1 5.6E+02 0.012 26.4 10.8 62 79-148 7-69 (276)
441 PRK12384 sorbitol-6-phosphate 26.9 6.8E+02 0.015 25.4 11.6 61 80-148 3-64 (259)
442 PRK09186 flagellin modificatio 26.8 3.6E+02 0.0078 27.4 9.1 62 79-148 4-66 (256)
443 PRK07062 short chain dehydroge 26.7 5.3E+02 0.012 26.4 10.4 63 79-149 8-71 (265)
444 PRK12859 3-ketoacyl-(acyl-carr 26.6 6.8E+02 0.015 25.7 11.2 94 78-190 5-110 (256)
445 PRK10754 quinone oxidoreductas 26.6 3.8E+02 0.0081 28.4 9.5 49 75-137 137-187 (327)
446 cd08270 MDR4 Medium chain dehy 26.5 4E+02 0.0087 27.7 9.6 50 76-137 130-179 (305)
447 PRK06500 short chain dehydroge 26.3 4.2E+02 0.0092 26.6 9.5 58 79-148 6-63 (249)
448 PRK06125 short chain dehydroge 26.2 5E+02 0.011 26.6 10.1 62 79-148 7-68 (259)
449 PRK07806 short chain dehydroge 26.1 5.6E+02 0.012 25.8 10.3 128 79-235 6-134 (248)
450 PRK07530 3-hydroxybutyryl-CoA 25.8 5.9E+02 0.013 27.1 10.8 43 81-132 6-48 (292)
451 PF01488 Shikimate_DH: Shikima 25.7 4.6E+02 0.0099 24.8 8.9 46 78-131 11-56 (135)
452 PRK06077 fabG 3-ketoacyl-(acyl 25.6 7E+02 0.015 25.1 11.0 135 79-237 6-142 (252)
453 PRK07453 protochlorophyllide o 25.5 5.9E+02 0.013 27.2 10.9 61 79-148 6-66 (322)
454 PRK05866 short chain dehydroge 25.4 3.3E+02 0.0072 28.9 8.8 61 79-148 40-100 (293)
455 PRK09260 3-hydroxybutyryl-CoA 25.4 3.1E+02 0.0067 29.2 8.6 38 88-132 8-45 (288)
456 KOG2352 Predicted spermine/spe 25.3 7E+02 0.015 29.4 11.6 118 77-238 46-164 (482)
457 PRK05854 short chain dehydroge 25.2 6.4E+02 0.014 27.0 11.1 63 79-149 14-77 (313)
458 PRK07024 short chain dehydroge 25.2 4.5E+02 0.0098 26.9 9.6 58 81-148 4-61 (257)
459 KOG1562 Spermidine synthase [A 25.2 2.1E+02 0.0045 31.7 7.0 124 78-253 121-248 (337)
460 PLN02989 cinnamyl-alcohol dehy 25.1 4.1E+02 0.009 28.3 9.6 62 79-148 5-67 (325)
461 PRK07370 enoyl-(acyl carrier p 24.6 4.7E+02 0.01 27.1 9.6 25 78-102 5-30 (258)
462 PRK05855 short chain dehydroge 24.6 4.2E+02 0.0091 30.5 10.1 61 79-148 315-375 (582)
463 cd05288 PGDH Prostaglandin deh 24.5 3.4E+02 0.0074 28.6 8.7 47 75-129 142-188 (329)
464 PRK06940 short chain dehydroge 24.5 4.7E+02 0.01 27.4 9.7 57 81-148 4-60 (275)
465 PF03446 NAD_binding_2: NAD bi 24.5 5.8E+02 0.013 24.7 9.7 109 88-263 8-118 (163)
466 PRK07814 short chain dehydroge 24.4 7.5E+02 0.016 25.4 11.1 62 78-148 9-70 (263)
467 cd08296 CAD_like Cinnamyl alco 24.4 4.6E+02 0.01 28.1 9.8 50 74-136 159-208 (333)
468 cd08244 MDR_enoyl_red Possible 24.4 4.8E+02 0.01 27.3 9.8 46 74-127 138-183 (324)
469 KOG3673 FtsJ-like RNA methyltr 24.3 23 0.0005 41.4 -0.3 16 82-97 271-286 (845)
470 PRK07060 short chain dehydroge 24.2 6E+02 0.013 25.4 10.1 43 78-128 8-50 (245)
471 PRK05396 tdh L-threonine 3-deh 24.2 5E+02 0.011 27.8 10.0 48 77-137 162-210 (341)
472 cd08291 ETR_like_1 2-enoyl thi 24.0 3.9E+02 0.0084 28.5 9.1 47 78-138 142-191 (324)
473 cd05284 arabinose_DH_like D-ar 23.5 3E+02 0.0065 29.3 8.1 45 75-127 164-208 (340)
474 PRK07985 oxidoreductase; Provi 23.4 5.4E+02 0.012 27.3 10.0 62 78-148 48-111 (294)
475 KOG3201 Uncharacterized conser 23.4 98 0.0021 31.4 3.8 70 56-133 4-76 (201)
476 PRK05884 short chain dehydroge 23.3 3.8E+02 0.0083 27.1 8.5 37 87-130 7-43 (223)
477 PRK08416 7-alpha-hydroxysteroi 23.3 7.7E+02 0.017 25.3 10.9 62 79-148 8-70 (260)
478 PRK12743 oxidoreductase; Provi 23.3 5.7E+02 0.012 26.1 9.9 60 80-148 3-63 (256)
479 PRK07109 short chain dehydroge 23.1 7E+02 0.015 27.2 11.0 61 79-148 8-68 (334)
480 PRK06128 oxidoreductase; Provi 23.0 5.5E+02 0.012 27.2 10.0 132 79-234 55-190 (300)
481 PRK08628 short chain dehydroge 22.7 6.5E+02 0.014 25.6 10.1 60 79-148 7-66 (258)
482 cd08292 ETR_like_2 2-enoyl thi 22.6 2.6E+02 0.0055 29.5 7.3 27 74-100 135-163 (324)
483 PRK05872 short chain dehydroge 22.4 6.4E+02 0.014 26.7 10.3 46 78-131 8-53 (296)
484 cd08279 Zn_ADH_class_III Class 22.3 3.8E+02 0.0083 29.2 8.8 46 74-127 178-223 (363)
485 PRK07097 gluconate 5-dehydroge 22.2 8.6E+02 0.019 24.9 11.2 62 78-148 9-70 (265)
486 PRK06124 gluconate 5-dehydroge 22.2 8.1E+02 0.018 24.8 10.7 62 78-148 10-71 (256)
487 PRK08589 short chain dehydroge 22.1 7.4E+02 0.016 25.7 10.6 60 79-148 6-65 (272)
488 PRK14891 50S ribosomal protein 21.7 1E+02 0.0022 29.8 3.4 34 508-546 7-40 (131)
489 COG1062 AdhC Zn-dependent alco 21.6 1.9E+02 0.0042 32.5 6.0 52 73-137 180-232 (366)
490 cd08269 Zn_ADH9 Alcohol dehydr 21.5 4.8E+02 0.01 27.2 9.0 52 73-136 124-175 (312)
491 cd08240 6_hydroxyhexanoate_dh_ 21.5 6E+02 0.013 27.3 10.0 43 77-127 174-216 (350)
492 PRK06101 short chain dehydroge 21.0 7.3E+02 0.016 25.1 10.0 53 85-149 6-58 (240)
493 cd05286 QOR2 Quinone oxidoredu 20.8 7E+02 0.015 25.5 10.0 46 74-127 132-177 (320)
494 cd08287 FDH_like_ADH3 formalde 20.7 6.3E+02 0.014 27.0 9.9 51 74-136 164-214 (345)
495 KOG0821 Predicted ribosomal RN 20.7 1.3E+02 0.0027 32.0 4.2 62 77-149 49-110 (326)
496 PRK15057 UDP-glucose 6-dehydro 20.6 1.1E+03 0.023 26.8 12.0 34 88-129 7-40 (388)
497 KOG2651 rRNA adenine N-6-methy 20.6 1.3E+02 0.0029 34.2 4.5 37 75-121 150-186 (476)
498 PRK07041 short chain dehydroge 20.4 6.4E+02 0.014 25.1 9.3 53 87-148 4-56 (230)
499 cd08274 MDR9 Medium chain dehy 20.3 7.1E+02 0.015 26.5 10.2 16 218-233 256-271 (350)
500 cd08297 CAD3 Cinnamyl alcohol 20.2 4.5E+02 0.0097 28.1 8.6 43 75-127 162-206 (341)
No 1
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-67 Score=562.03 Aligned_cols=283 Identities=54% Similarity=0.876 Sum_probs=264.7
Q ss_pred CCCccceeecccccCCCccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCC
Q 004775 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDH 80 (731)
Q Consensus 1 ~~~l~~~~~eg~~~~~~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~ 80 (731)
++++.+.++||++++.+.++||||++++|+.++.+..+|+++.+.+||.|++.++++|+|++||++||+|+++|+++|||
T Consensus 78 ~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~ 157 (375)
T KOG2198|consen 78 FESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGD 157 (375)
T ss_pred chhhhhhhccccccCccccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCC
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+||||||||||||+||++.++...+ .|.|+|||++.+|+++|+|+++++..+++.+++|+++.||++.+...
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~~-----~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~--- 229 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDPT-----RGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG--- 229 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCCC-----CCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC---
Confidence 9999999999999999999996422 58999999999999999999999999999999999999998754210
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhh-cccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCC
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK-WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~-w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~ 239 (731)
.+.....||+||||||||||||+|+++++|+. |+...+.+||.+|.+||++|+++||+||+|||||||+|
T Consensus 230 ---------~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 ---------NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ---------chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 12345799999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCC-ccccchhhhhhhhcc
Q 004775 240 PVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKG-IWLASHKHVRKFRRI 300 (731)
Q Consensus 240 p~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~~~-~~~~~~~~~~~~~~~ 300 (731)
|+|||+||+++|+++++++++++++..+|.|++.+|.+.|++.+++ .|+.++.++|.....
T Consensus 301 pieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~~~~~~vp~~~~~ 362 (375)
T KOG2198|consen 301 PIENEAVVQEALQKVGGAVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWFTSPLEVPKLVAN 362 (375)
T ss_pred chhhHHHHHHHHHHhcCcccceeeccccccceecCCCCcceEEecCcccccCccccccchhh
Confidence 9999999999999999999999999999999999999999999976 489999999977654
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=3.7e-52 Score=466.61 Aligned_cols=378 Identities=24% Similarity=0.378 Sum_probs=275.8
Q ss_pred CccccCCCCCcceeecc-chhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhc--CCCCCCEEEeeccCcchHH
Q 004775 17 IRPLPWYPNNLAWHSNF-SRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFL--DVQPDHFVLDMCAAPGSKT 93 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~-~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llL--d~~pg~~VLDmCAAPGsKT 93 (731)
.+++||+|+++.+.... .+..+...+ .| ..|.|+.||++||+|+.+| +++||++||||||||||||
T Consensus 60 ~~~~p~~~~g~~~~~~~~~~~~~~~~~------~~-----~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKT 128 (470)
T PRK11933 60 LTPIPWCEEGFWIERDDEDALPLGNTA------EH-----LSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKT 128 (470)
T ss_pred eeECCCCCceEEEecCccccCCcccCh------HH-----HCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHH
Confidence 56899999976432210 011122222 22 4599999999999999999 9999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccc
Q 004775 94 FQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173 (731)
Q Consensus 94 ~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~ 173 (731)
+|||++|++ .|.|+|||++.+|+..|.+|++|+|+.|+.+++.|+..+... .
T Consensus 129 t~la~~l~~--------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--------------------~ 180 (470)
T PRK11933 129 TQIAALMNN--------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--------------------L 180 (470)
T ss_pred HHHHHHcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--------------------c
Confidence 999999875 699999999999999999999999999999999998865321 1
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 174 ~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
...||+||+||||||.|++||+|+++..|++.....++.+|.+||.+|+++|||||+|||||||++|+|||+||+++|++
T Consensus 181 ~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 181 PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 24699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCcc
Q 004775 254 CEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 333 (731)
Q Consensus 254 ~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (731)
++..++++++.. .|... +.
T Consensus 261 ~~~~~~~~~~~~------------~~~~~-------------------------~~------------------------ 279 (470)
T PRK11933 261 YPDAVEFEPLGD------------LFPGA-------------------------EK------------------------ 279 (470)
T ss_pred CCCcEEeccccc------------ccccc-------------------------cc------------------------
Confidence 875555554421 11100 00
Q ss_pred cchhhhcccccCCchhhhcccccCCceEEEcccCCCCCceEEEEEEEcCCCccccccCCcccccCCCCCCCCccccCccc
Q 004775 334 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDT 413 (731)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (731)
......|+|++||.++|+|||||+|+|........ . ..
T Consensus 280 --------------------~~~~~~~~r~~P~~~~~dGfFiA~lrk~~~~~~~~---~--------~~----------- 317 (470)
T PRK11933 280 --------------------ALTEEGFLHVFPQIYDSEGFFVARLRKTASVPRLP---A--------PK----------- 317 (470)
T ss_pred --------------------ccCCCCeEEECCCCCCCcceeeEEEEecCCccccc---c--------cc-----------
Confidence 00134799999999999999999999975421100 0 00
Q ss_pred cccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccCC
Q 004775 414 EEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGID 493 (731)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~d 493 (731)
. ..+| .
T Consensus 318 -------------------------------------------------------------~-~~~k------------~ 323 (470)
T PRK11933 318 -------------------------------------------------------------Y-KVGK------------F 323 (470)
T ss_pred -------------------------------------------------------------c-cccc------------c
Confidence 0 0000 0
Q ss_pred CcccCC--ChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEec
Q 004775 494 PVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT 571 (731)
Q Consensus 494 P~~f~~--d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~vs~~vk~il~~n~~~g~~lkii~~GvK~F~rq~ 571 (731)
|+.-.. ..+.|....+-|+++.. ....++.++ ..||++-......+ .+|||+..|+.+=+-..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~------~~l~~~p~~~~~~~-------~~l~v~r~Gl~lg~~kk 388 (470)
T PRK11933 324 PFTPAKDKEAQEIRQAAASVGLSWP--ENLRLWQRD------KEVWLFPAGIEPLI-------GKVRFSRIGIKLAETHK 388 (470)
T ss_pred cccccchhHHHHHHHHHHhcCCCCC--CCCcEEEEC------CEEEEeccccchhh-------cCCeEeeeceeEeeeec
Confidence 000000 11234444444566532 223454444 36998887642311 47999999999976542
Q ss_pred CCCCCCcccceeeccchhhhhhhcccCcEEEcCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEe
Q 004775 572 SREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 644 (731)
Q Consensus 572 ~~~~~~~~c~~Ri~~eGl~~i~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~e~~~~~~~l~~G~~vl~~~ 644 (731)
=+|..++.....+.+.-.++++.++.++....|....+... +. ..-|-++|.++
T Consensus 389 --------~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Yl~ge~l~~~---~~--------~~~G~~lv~~~ 442 (470)
T PRK11933 389 --------KGYRWQHEAVIALASPDNANAFELTPQEAEEWYMGRDIYPQ---TA--------PPAGEVIVTYQ 442 (470)
T ss_pred --------CCeeEcHHHHHHhCcccccceEecCHHHHHHHHCCCCccCC---CC--------CCCCEEEEEEC
Confidence 26888888777777666678999999999999987666542 10 12477776665
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-52 Score=456.46 Aligned_cols=182 Identities=40% Similarity=0.607 Sum_probs=167.2
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
..|.|+.||++||+|+++|+++||++||||||||||||+|||++|.+. ++.|+|+|++.+|+..|++|++|+|
T Consensus 134 ~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~-------~~iV~A~D~~~~Rl~~l~~nl~RlG 206 (355)
T COG0144 134 AEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENE-------GAIVVAVDVSPKRLKRLRENLKRLG 206 (355)
T ss_pred hceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCC-------CceEEEEcCCHHHHHHHHHHHHHcC
Confidence 559999999999999999999999999999999999999999998762 4567999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
+.|+.++++|+..++.... ...+||+||+||||||+|++||+|++|+.|++.+...++.+|.
T Consensus 207 ~~nv~~~~~d~~~~~~~~~------------------~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~ 268 (355)
T COG0144 207 VRNVIVVNKDARRLAELLP------------------GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK 268 (355)
T ss_pred CCceEEEeccccccccccc------------------ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHH
Confidence 9999999999988765321 1136999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+||.+|+++|||||+|||||||++|+|||+||.++|+++. .++++++
T Consensus 269 ~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~ 315 (355)
T COG0144 269 EILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPV 315 (355)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC-Cceeecc
Confidence 9999999999999999999999999999999999999986 4666665
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=4e-49 Score=418.14 Aligned_cols=181 Identities=42% Similarity=0.611 Sum_probs=163.9
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
+.|.|+.||.+||+++++|+++||+.||||||||||||+||+++|.+ .|.|+|+|++..|+..|..+++|+|
T Consensus 63 ~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~--------~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 63 KNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGN--------KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp HTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTT--------TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred hCCcEEecccccccccccccccccccccccccCCCCceeeeeecccc--------hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 35999999999999999999999999999999999999999999875 6999999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
..++.+++.|+..+.. ......||+||+|+||||.|+++++|++.+.|++.....+..+|.
T Consensus 135 ~~~v~~~~~D~~~~~~-------------------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~ 195 (283)
T PF01189_consen 135 VFNVIVINADARKLDP-------------------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQR 195 (283)
T ss_dssp -SSEEEEESHHHHHHH-------------------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHH
T ss_pred CceEEEEeeccccccc-------------------cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHH
Confidence 9999999888776421 011236999999999999999999999977889999999999999
Q ss_pred HHHHHHHhhc----cCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 216 QIAMRGISLL----KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 216 ~IL~rAl~lL----KpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
+||.+|++++ ||||+|||||||++|+|||+||..+|+++. .++++++.
T Consensus 196 ~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~-~~~l~~~~ 247 (283)
T PF01189_consen 196 EILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP-DFELVPIP 247 (283)
T ss_dssp HHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST-SEEEECCE
T ss_pred HHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC-CcEEEecc
Confidence 9999999999 999999999999999999999999999985 68887763
No 5
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=412.08 Aligned_cols=193 Identities=36% Similarity=0.547 Sum_probs=172.8
Q ss_pred hHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHH
Q 004775 43 TLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (731)
Q Consensus 43 ~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~ 122 (731)
.+.++++||. |.+..|.++|+||+++|+||||++||||||||||||++||.+|++ +|.|+|||.+..
T Consensus 211 pigat~e~la-----g~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn--------~G~I~AnD~n~~ 277 (460)
T KOG1122|consen 211 PIGATPEYLA-----GHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKN--------TGVIFANDSNEN 277 (460)
T ss_pred ccCCchhhcc-----cceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcC--------CceEEecccchH
Confidence 4456677655 999999999999999999999999999999999999999999987 799999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhc
Q 004775 123 RCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW 202 (731)
Q Consensus 123 R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w 202 (731)
|+..++.|+.|+|+.|.+++++|+..||.-. +. ..|||||+|+||||.|++.|.+.....-
T Consensus 278 r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~------------------~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k 338 (460)
T KOG1122|consen 278 RLKSLKANLHRLGVTNTIVSNYDGREFPEKE------------------FP-GSFDRVLLDAPCSGTGVISKDQSVKTNK 338 (460)
T ss_pred HHHHHHHHHHHhCCCceEEEccCcccccccc------------------cC-cccceeeecCCCCCCcccccccccccch
Confidence 9999999999999999999999999887421 11 3899999999999999999988863323
Q ss_pred ccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004775 203 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (731)
Q Consensus 203 ~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP 268 (731)
+......++.+|+++|..|++++++||+|||||||+.++|||+||+++|+++. .++|+++...++
T Consensus 339 ~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG 403 (460)
T KOG1122|consen 339 TVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIG 403 (460)
T ss_pred hHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC-ceEeccccccCC
Confidence 46778889999999999999999999999999999999999999999999986 699998864444
No 6
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=9.9e-45 Score=380.98 Aligned_cols=172 Identities=40% Similarity=0.613 Sum_probs=159.7
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
..|.|+.||.+||+++++|+++||++|||+|||||+||++|++.+++ +|.|+|+|+++.|++.++++++++|
T Consensus 49 ~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~~l~~~~~n~~~~g 120 (264)
T TIGR00446 49 LSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKN--------EGAIVANEFSKSRTKVLIANINRCG 120 (264)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCC--------CCEEEEEcCCHHHHHHHHHHHHHcC
Confidence 45999999999999999999999999999999999999999998764 5899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
..++.+++.|+..++.. ...||+||+||||||.|+++++|++++.|++.....++.+|.
T Consensus 121 ~~~v~~~~~D~~~~~~~---------------------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 179 (264)
T TIGR00446 121 VLNVAVTNFDGRVFGAA---------------------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK 179 (264)
T ss_pred CCcEEEecCCHHHhhhh---------------------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence 98899999998765321 145999999999999999999999988899999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
+||.+|+++|||||+|||||||++++|||+||+++|+++.+
T Consensus 180 ~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998764
No 7
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.1e-41 Score=380.63 Aligned_cols=179 Identities=31% Similarity=0.537 Sum_probs=164.2
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
+.|.++.||.+||+++.+|++++|++|||||||||+||+++++.+++ +|.|+|+|+++.|++.++++++|+|
T Consensus 215 ~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~--------~g~V~a~Dis~~rl~~~~~n~~r~g 286 (431)
T PRK14903 215 KDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKD--------QGKILAVDISREKIQLVEKHAKRLK 286 (431)
T ss_pred HCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 56999999999999999999999999999999999999999998764 6899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
..++.+++.|+..++.. ....||+|||||||||.|+++++|++++.|++.....+..+|.
T Consensus 287 ~~~v~~~~~Da~~l~~~--------------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~ 346 (431)
T PRK14903 287 LSSIEIKIADAERLTEY--------------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQL 346 (431)
T ss_pred CCeEEEEECchhhhhhh--------------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHH
Confidence 98888999998775421 1257999999999999999999999998999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+||.+|+++|||||+|||||||++|+|||+||.++|++++ .++++++
T Consensus 347 ~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~-~~~~~~~ 393 (431)
T PRK14903 347 RIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDI 393 (431)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC-CcEEecc
Confidence 9999999999999999999999999999999999999876 4666554
No 8
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.8e-40 Score=368.78 Aligned_cols=201 Identities=30% Similarity=0.483 Sum_probs=171.8
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
.+++||.|+++.+. ..+..+. ....| ..|+++.||.+|++++.+|++++|++|||+|||||+||++|
T Consensus 204 ~~~~~~~~~~~~~~--~~~~~~~------~~~~f-----~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~l 270 (434)
T PRK14901 204 ATPIPGLPQGLRLT--GNPGSIR------QLPGY-----EEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHI 270 (434)
T ss_pred eEECCCCCCeEEec--CCCCccc------cChHH-----hCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHH
Confidence 46788999876443 1111222 22233 45999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
++.+.+ +|.|+|+|++..|+..+++|++++|..++.+++.|+..++... ......
T Consensus 271 a~~~~~--------~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----------------~~~~~~ 325 (434)
T PRK14901 271 AELMGD--------QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK-----------------PQWRGY 325 (434)
T ss_pred HHHhCC--------CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc-----------------cccccc
Confidence 998754 6899999999999999999999999999999999988754210 011257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
||+||+||||||.|+++++|++.+.|++.....+..+|.+||.+|+++|||||+|||||||++|+|||+||.++|++++
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999999999999999999777888899999999999999999999999999999999999999999999999764
No 9
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=2.6e-39 Score=361.20 Aligned_cols=171 Identities=32% Similarity=0.449 Sum_probs=151.8
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
+.|.++.||.+||+++.+|++++|++|||||||||+||+++++.+. .|.|+|+|+++.|++.+++|++++|
T Consensus 216 ~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~---------~~~v~a~D~~~~~l~~~~~n~~r~g 286 (426)
T TIGR00563 216 EEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP---------QAQVVALDIHEHRLKRVYENLKRLG 286 (426)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 5699999999999999999999999999999999999999999863 4899999999999999999999999
Q ss_pred CCceEEE--ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004775 136 TANLIVT--NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (731)
Q Consensus 136 ~~ni~vt--~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (731)
.. +.++ ..|+...+. ......||+||+||||||.|++|++|++.+.|++.....+..+
T Consensus 287 ~~-~~v~~~~~d~~~~~~-------------------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~l 346 (426)
T TIGR00563 287 LT-IKAETKDGDGRGPSQ-------------------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAEL 346 (426)
T ss_pred CC-eEEEEeccccccccc-------------------cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHH
Confidence 86 4453 344332211 0113579999999999999999999999777889999999999
Q ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
|.+||.+|+++|||||+|||||||++|+|||+||..+|++++
T Consensus 347 Q~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 347 QSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999875
No 10
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5e-38 Score=352.64 Aligned_cols=203 Identities=32% Similarity=0.471 Sum_probs=173.0
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
.++.||+|+++.+. ...+...+ .| ..|.++.||.+|++++.++++++|++|||+|||||+||+++
T Consensus 204 ~~~~~~~~~~~~~~----~~~~~~~~------~~-----~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~l 268 (444)
T PRK14902 204 VEESLLSPEALVIE----KGNIAGTD------LF-----KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHI 268 (444)
T ss_pred eEEcCCCCCeEEEe----CCCcccCh------HH-----hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHH
Confidence 56789999875432 12232222 22 35999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
++.+++ .|.|+|+|+++.|+..+++|++++|..++.+++.|+..++.. . ...
T Consensus 269 a~~~~~--------~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------------------~-~~~ 320 (444)
T PRK14902 269 AELLKN--------TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------------------F-AEK 320 (444)
T ss_pred HHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch-------------------h-ccc
Confidence 998743 589999999999999999999999998899999988764310 1 157
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
||+|++||||||.|+++++|++...|++.....+..+|.+||..|.++|||||+|||||||++++|||+||.++|++++
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~- 399 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP- 399 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC-
Confidence 9999999999999999999998666777888889999999999999999999999999999999999999999999865
Q ss_pred cEEEEec
Q 004775 257 SVELVDV 263 (731)
Q Consensus 257 ~~elvd~ 263 (731)
.++++++
T Consensus 400 ~~~~~~~ 406 (444)
T PRK14902 400 EFELVPL 406 (444)
T ss_pred CcEEecc
Confidence 4777665
No 11
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.7e-38 Score=352.91 Aligned_cols=178 Identities=28% Similarity=0.443 Sum_probs=161.4
Q ss_pred cccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
...|.++.|+.+|++++.+|++++|++|||+|||||+||.++++.+.. .|.|+|+|+++.|++.++++++++
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~--------~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQN--------RGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCC--------CcEEEEEECCHHHHHHHHHHHHHh
Confidence 356999999999999999999999999999999999999999998753 589999999999999999999999
Q ss_pred CCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004775 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (731)
Q Consensus 135 g~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ 214 (731)
|..++.++++|+..++. ...||+|++||||||.|+++++|++.+.|++.....+..+|
T Consensus 299 g~~~v~~~~~Da~~~~~----------------------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q 356 (445)
T PRK14904 299 GITIIETIEGDARSFSP----------------------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ 356 (445)
T ss_pred CCCeEEEEeCccccccc----------------------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH
Confidence 99888999998876421 14799999999999999999999997778888888899999
Q ss_pred HHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
.+||.++.++|||||+|||||||++|+|||+||..+|++++ .+++++.
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~-~~~~~~~ 404 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP-EFSAEPS 404 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC-CCEEecc
Confidence 99999999999999999999999999999999999999875 3555443
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-36 Score=339.76 Aligned_cols=197 Identities=30% Similarity=0.433 Sum_probs=164.5
Q ss_pred CCccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHH
Q 004775 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQ 95 (731)
Q Consensus 16 ~~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~q 95 (731)
..++.||.|+++.+.- . ..+ .....| +.|.++.||.+||+++.+|++++|++|||+|||||+||++
T Consensus 196 ~~~~~~~~~~~~~~~~--~-~~~------~~~~~~-----~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~ 261 (427)
T PRK10901 196 EAFPHAVGPDAIRLET--P-VPV------HQLPGF-----AEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAH 261 (427)
T ss_pred ceeecCCCCCeEEECC--C-CCc------ccCchh-----hCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHH
Confidence 3467889998764421 1 112 122222 4599999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccc
Q 004775 96 LLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175 (731)
Q Consensus 96 Lae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (731)
+++.+. .+.|+|+|+++.|+..++++++++|.. +.++++|+..++.. ....
T Consensus 262 la~~~~---------~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-------------------~~~~ 312 (427)
T PRK10901 262 ILELAP---------QAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-------------------WDGQ 312 (427)
T ss_pred HHHHcC---------CCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-------------------cccC
Confidence 998752 379999999999999999999999875 57888888764321 1125
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 176 ~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
.||+|++||||||.|+++++|++.+.+++.+...+..+|.++|.+|.++|||||+|||||||+++.|||++|..+|++++
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 79999999999999999999998545677777788999999999999999999999999999999999999999999865
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.6e-29 Score=270.14 Aligned_cols=180 Identities=27% Similarity=0.373 Sum_probs=147.9
Q ss_pred ccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004775 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (731)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR 133 (731)
.++.|.+..|+.+|++|+++|++.+|..|+|+|||||.||+|+|..+.+ .|.|+|.|.+..|.+.+..+++.
T Consensus 189 ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n--------~gki~afe~d~~r~~tl~~~l~~ 260 (413)
T KOG2360|consen 189 LYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRN--------QGKIYAFERDAKRAATLRKLLKI 260 (413)
T ss_pred ccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhc--------cCCcchhhhhhHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999875 79999999999999999999999
Q ss_pred cCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh--hhcccccccchH
Q 004775 134 MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW--RKWNVGLGNGLH 211 (731)
Q Consensus 134 lg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~--~~w~~~~~~~L~ 211 (731)
.|..++....+|+...+ ..........||+||+|||+|+..+.-.+- ..-.+....+|.
T Consensus 261 ag~~~~~~~~~df~~t~-------------------~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~ 321 (413)
T KOG2360|consen 261 AGVSIVESVEGDFLNTA-------------------TPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQ 321 (413)
T ss_pred cCCCccccccccccCCC-------------------CcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHH
Confidence 99988777777665421 112235678899999999999864422211 111234456788
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEE
Q 004775 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (731)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elv 261 (731)
..|..++.+|+.+-+. -++||||||++.+|||.||+.+|......+++.
T Consensus 322 ~fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~~p~~~~l~ 370 (413)
T KOG2360|consen 322 SFQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLA 370 (413)
T ss_pred HHHHHHHHHHhcCCch-hheeeecchhhhhhhhHHHHHHHhhChhHhhhc
Confidence 8999999999997666 899999999999999999999999765444443
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.57 E-value=2.1e-14 Score=159.51 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=136.9
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
+.++....+++.|.+++...+ ++|.+..|.........+ .+|.+|||+|||+|+.++++
T Consensus 180 ~~~~~v~E~g~~f~vdl~~g~------------------ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~a 238 (396)
T PRK15128 180 PALLPIEEHGMKLLVDIQGGH------------------KTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSA 238 (396)
T ss_pred CccEEEEECCEEEEEeccccc------------------ccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHH
Confidence 334555567777777765433 679999997766554443 46899999999999988765
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCcccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQ 174 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~ 174 (731)
+. . +...|+++|+|+..++.+++|++.++.. ++.+.+.|+..+..- .....
T Consensus 239 a~--~--------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~-----------------~~~~~ 291 (396)
T PRK15128 239 LM--G--------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT-----------------YRDRG 291 (396)
T ss_pred Hh--C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH-----------------HHhcC
Confidence 42 2 2468999999999999999999999874 688888988664210 00112
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC--CCCcCcHHHHHHHHH
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILR 252 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS--l~p~ENEaVV~~~L~ 252 (731)
.+||.|++|||+-.... ..+ .........++..|+++|++||.|+++||| +...+-..+|.++..
T Consensus 292 ~~fDlVilDPP~f~~~k----~~l---------~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~ 358 (396)
T PRK15128 292 EKFDVIVMDPPKFVENK----SQL---------MGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAI 358 (396)
T ss_pred CCCCEEEECCCCCCCCh----HHH---------HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 57999999999743220 011 112233567888999999999999999999 656666788888888
Q ss_pred HCCCcEEEEecCc
Q 004775 253 KCEGSVELVDVSN 265 (731)
Q Consensus 253 ~~~g~~elvd~s~ 265 (731)
+.+..++++....
T Consensus 359 ~~~~~~~~l~~~~ 371 (396)
T PRK15128 359 DAGRDVQFIEQFR 371 (396)
T ss_pred HcCCeEEEEEEcC
Confidence 8888888888653
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.53 E-value=1.2e-13 Score=137.26 Aligned_cols=139 Identities=26% Similarity=0.303 Sum_probs=115.5
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..-.|.++||+++||++||+|+-|.+++ +++ |.|+|+|+|.+++|+.++.+|+.++|.+|+.++.++|..
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~--------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAG--------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhC--------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 45567889999999999999999999998 554 579999999999999999999999999999999999877
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
+.. ....||+|++ .|.|. ...||..++..||+|
T Consensus 96 ~L~---------------------~~~~~daiFI----GGg~~----------------------i~~ile~~~~~l~~g 128 (187)
T COG2242 96 ALP---------------------DLPSPDAIFI----GGGGN----------------------IEEILEAAWERLKPG 128 (187)
T ss_pred hhc---------------------CCCCCCEEEE----CCCCC----------------------HHHHHHHHHHHcCcC
Confidence 421 1137999998 33332 246899999999999
Q ss_pred CEEEEEeCCCCCcCcHHHHHHHHHHCCC-cEEEEecCcc
Q 004775 229 GRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDVSNE 266 (731)
Q Consensus 229 G~LVYSTCSl~p~ENEaVV~~~L~~~~g-~~elvd~s~~ 266 (731)
|+||...-++ ||++...+.+++.++ ++..+.++..
T Consensus 129 grlV~naitl---E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 129 GRLVANAITL---ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred CeEEEEeecH---HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 9999987777 999999999999998 4555555443
No 16
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.52 E-value=7.9e-14 Score=153.89 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=128.7
Q ss_pred ccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004775 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (731)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR 133 (731)
..++|.+..|..+.....-.+. |.+|||+||.+|++|.++|.. +...|+++|+|...+..+++|++.
T Consensus 196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~g----------GA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALG----------GASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred cccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhc----------CCCceEEEeccHHHHHHHHHHHHh
Confidence 3478999999988766555543 999999999999999998653 246999999999999999999998
Q ss_pred cCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004775 134 MCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (731)
Q Consensus 134 lg~~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (731)
+|.. .+.++++|+..+-. .......+||+|++||| ++.+++. ......
T Consensus 263 Ng~~~~~~~~i~~Dvf~~l~-----------------~~~~~g~~fDlIilDPP-----sF~r~k~--------~~~~~~ 312 (393)
T COG1092 263 NGLDGDRHRFIVGDVFKWLR-----------------KAERRGEKFDLIILDPP-----SFARSKK--------QEFSAQ 312 (393)
T ss_pred cCCCccceeeehhhHHHHHH-----------------HHHhcCCcccEEEECCc-----ccccCcc--------cchhHH
Confidence 8864 47888999877532 11223368999999999 2222222 223455
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcH--HHHHHHHHHCCCcEEEEecC
Q 004775 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENE--aVV~~~L~~~~g~~elvd~s 264 (731)
.-..+|+..|+++|+|||+++.||||-+-..++ ..|...+...+..++++...
T Consensus 313 rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~ 367 (393)
T COG1092 313 RDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGE 367 (393)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeecc
Confidence 667899999999999999999999997665554 67777777766677777643
No 17
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.40 E-value=6.5e-13 Score=141.46 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=112.4
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
+..+....+++.|.+++...+ ++|.+..|..+..+.... ..|.+|||+||.+|++|+++
T Consensus 83 ~~~~~v~E~gl~f~v~l~~gq------------------ktGlFlDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~A 141 (286)
T PF10672_consen 83 PEFFTVEENGLKFRVDLTDGQ------------------KTGLFLDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAA 141 (286)
T ss_dssp SSEEEEEETTEEEEEESSSSS------------------STSS-GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHH
T ss_pred CCceEEEECCEEEEEEcCCCC------------------cceEcHHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHH
Confidence 344445667777877765543 689999999887765544 35899999999999999987
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCcccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQ 174 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~ 174 (731)
+.. +...|+++|.|...++.+++|++.+|.. .+.++..|+..+-.. . ...
T Consensus 142 a~g----------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-----------------~-~~~ 193 (286)
T PF10672_consen 142 AAG----------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-----------------L-KKG 193 (286)
T ss_dssp HHT----------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-----------------H-HHT
T ss_pred HHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-----------------H-hcC
Confidence 542 2458999999999999999999988864 688888888664210 0 123
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCc
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 243 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~EN 243 (731)
.+||.|+||||.-.-| ...+..-..+|+.+++++|++||.|+.||||-+-..+
T Consensus 194 ~~fD~IIlDPPsF~k~----------------~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 194 GRFDLIILDPPSFAKS----------------KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp T-EEEEEE--SSEESS----------------TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CCCCEEEECCCCCCCC----------------HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 5899999999943211 1234456778999999999999999999999776654
No 18
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.37 E-value=7.4e-12 Score=126.34 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=108.6
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccc
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQ 147 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~ 147 (731)
+....+++.++++|||+|||+|..+.+++..+.. .+.|+|+|+++.+++.+++++++++ ..++.+.+.|+.
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~--------~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGE--------TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 3334568899999999999999999999887642 5799999999999999999999998 467888888775
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
.+.. .....||+|++... .. ....++..+.++|||
T Consensus 103 ~~l~--------------------~~~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~Lkp 137 (198)
T PRK00377 103 EILF--------------------TINEKFDRIFIGGG---SE----------------------KLKEIISASWEIIKK 137 (198)
T ss_pred hhHh--------------------hcCCCCCEEEECCC---cc----------------------cHHHHHHHHHHHcCC
Confidence 4311 01147999998431 00 114578899999999
Q ss_pred CCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 228 GGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 228 GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
||++|+.+|++ ++...+..+|++.+..++++.+.
T Consensus 138 gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 138 GGRIVIDAILL---ETVNNALSALENIGFNLEITEVI 171 (198)
T ss_pred CcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999877 67778888888877667776664
No 19
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.37 E-value=5.1e-12 Score=150.10 Aligned_cols=183 Identities=12% Similarity=0.053 Sum_probs=129.9
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
+.++....+++.|.+++... .++|.+..|.....+...+ ..|.+|||+|||+|+.++++
T Consensus 498 ~~~~~v~e~g~~f~v~~~~~------------------~~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~a 556 (702)
T PRK11783 498 GEFLEVTEYGAKLLVNLTDY------------------LDTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHA 556 (702)
T ss_pred CceEEEEECCEEEEEEcCCC------------------CcceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHH
Confidence 44444556666666655432 2568787787655443333 35889999999999999998
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCcccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQ 174 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~ 174 (731)
+.. +...|+++|+|+..++.+++|++.++.. ++.+++.|+..+.. ...
T Consensus 557 a~~----------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~--------------------~~~ 606 (702)
T PRK11783 557 ALG----------GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK--------------------EAR 606 (702)
T ss_pred HHC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH--------------------HcC
Confidence 763 1357999999999999999999999875 68888888765321 002
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
.+||.|++|||+-+.+- +..+. ......+.+++..++++|++||.|++++|+-+.... .+++.+.
T Consensus 607 ~~fDlIilDPP~f~~~~--~~~~~---------~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~----~~~~~~~ 671 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSK--RMEDS---------FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD----EEGLAKL 671 (702)
T ss_pred CCcCEEEECCCCCCCCC--ccchh---------hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh----HHHHHhC
Confidence 57999999999866431 10011 122345678899999999999999999999765544 5566666
Q ss_pred CCcEEEEecCc
Q 004775 255 EGSVELVDVSN 265 (731)
Q Consensus 255 ~g~~elvd~s~ 265 (731)
+..++++....
T Consensus 672 g~~~~~i~~~~ 682 (702)
T PRK11783 672 GLKAEEITAKT 682 (702)
T ss_pred CCeEEEEecCC
Confidence 76777777543
No 20
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.36 E-value=2e-11 Score=120.99 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=111.2
Q ss_pred cchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004775 68 MVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (731)
Q Consensus 68 mlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~ 147 (731)
++....++..++.+|||+|||+|..+..++.. ...|+++|+++..++.++++++..+. ++.+...|..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~ 76 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK-----------GKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLF 76 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccc
Confidence 34444455667789999999999999888764 12799999999999999999987775 5666766654
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
..+ ..+||.|++++|+-....-.+ .+-|..+....+......+.++|.++.++|||
T Consensus 77 ~~~-----------------------~~~fD~Vi~n~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~ 132 (179)
T TIGR00537 77 KGV-----------------------RGKFDVILFNPPYLPLEDDLR-RGDWLDVAIDGGKDGRKVIDRFLDELPEILKE 132 (179)
T ss_pred ccc-----------------------CCcccEEEECCCCCCCcchhc-ccchhhhhhhcCCchHHHHHHHHHhHHHhhCC
Confidence 321 147999999999853322111 12222222222333345678899999999999
Q ss_pred CCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 228 GGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 228 GG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
||++++++++. .++..+...|++.+..++.+.
T Consensus 133 gG~~~~~~~~~---~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 133 GGRVQLIQSSL---NGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CCEEEEEEecc---CChHHHHHHHHhCCCeEEEEE
Confidence 99999998877 457778888888875554443
No 21
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.29 E-value=3.4e-11 Score=130.91 Aligned_cols=131 Identities=24% Similarity=0.228 Sum_probs=102.0
Q ss_pred Cccccchhh------hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 64 EAVSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 64 d~~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+++|-|.+ ++++++|+.|||.|||+|+.+..++.. ...|+|+|+|+.++..++.|+++.|..
T Consensus 162 ~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-----------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 162 KPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-----------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred CCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-----------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 355665544 357889999999999999987765432 368999999999999999999999988
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004775 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (731)
Q Consensus 138 ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I 217 (731)
++.+...|+..+|. ....||.|++||||...... ....+..++.++
T Consensus 231 ~i~~~~~D~~~l~~---------------------~~~~~D~Iv~dPPyg~~~~~-------------~~~~~~~l~~~~ 276 (329)
T TIGR01177 231 DFFVKRGDATKLPL---------------------SSESVDAIATDPPYGRSTTA-------------AGDGLESLYERS 276 (329)
T ss_pred CCeEEecchhcCCc---------------------ccCCCCEEEECCCCcCcccc-------------cCCchHHHHHHH
Confidence 88888888877542 12579999999998542211 012344678899
Q ss_pred HHHHHhhccCCCEEEEEeCCCC
Q 004775 218 AMRGISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 218 L~rAl~lLKpGG~LVYSTCSl~ 239 (731)
|..+.+.||+||+++|.+++-.
T Consensus 277 l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 277 LEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHccCCcEEEEEEcCCC
Confidence 9999999999999999988753
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.27 E-value=6.3e-11 Score=107.22 Aligned_cols=110 Identities=23% Similarity=0.266 Sum_probs=84.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccc-ccCCCcccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEA-QHFPGCRAN 155 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da-~~fp~~~~~ 155 (731)
|+.+|||+|||+|..+..+++.. +...|+|+|+|+..++.+++++...+. .++.+.+.|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-----
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-----
Confidence 68999999999999999999853 357899999999999999999966554 7899999988 2211
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|+++. .+... .... ..+.++|.++.++|+|||++|+++
T Consensus 67 -----------------~~~~~D~v~~~~-~~~~~----------------~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 -----------------FLEPFDLVICSG-FTLHF----------------LLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -----------------TSSCEEEEEECS-GSGGG----------------CCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------cCCCCCEEEECC-Ccccc----------------ccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 125699999843 10000 1111 456788999999999999999999
Q ss_pred C
Q 004775 236 C 236 (731)
Q Consensus 236 C 236 (731)
|
T Consensus 112 ~ 112 (112)
T PF12847_consen 112 C 112 (112)
T ss_dssp -
T ss_pred C
Confidence 8
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=99.27 E-value=1.3e-10 Score=119.48 Aligned_cols=147 Identities=18% Similarity=0.249 Sum_probs=102.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++++|||+|||+|..+..++.. + .+.|+++|+++.++..+++|+++.+. ++.+.+.|....
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~-~---------~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----- 96 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA-G---------AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----- 96 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh-----
Confidence 4678999999999999998888753 1 35899999999999999999988876 466776665431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCC---CCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVP---CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~P---CSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||.|++|+| |+..+...+.+.. .|..+ ......+.+++..+.++||+||++
T Consensus 97 -----------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~a~~~Lk~gG~l 155 (223)
T PRK14967 97 -----------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPAR--AWDAG--PDGRAVLDRLCDAAPALLAPGGSL 155 (223)
T ss_pred -----------------ccCCCeeEEEECCCCCCCCcccccccChhH--hhhCC--CcHHHHHHHHHHHHHHhcCCCcEE
Confidence 01257999999986 4444544444443 23211 123345678999999999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHCCCcEEEE
Q 004775 232 VYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~~~g~~elv 261 (731)
++.+-+++ +-..+...+++.+..++.+
T Consensus 156 ~~~~~~~~---~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 156 LLVQSELS---GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred EEEEeccc---CHHHHHHHHHHCCCCeEEE
Confidence 97654443 2233456666665444444
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.27 E-value=1.4e-11 Score=112.56 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=88.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|.+|||+|||+|..+..+++.. ...++++|+|+..++++++++.+.+. .++.+.+.|...+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE------ 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH------
T ss_pred CCEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh------
Confidence 6799999999999999888763 36999999999999999999999886 578899998876431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
.....+||.|++|||......... ....+..+++.++.++||+||.+++.+|+
T Consensus 65 -------------~~~~~~~D~Iv~npP~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 65 -------------PLPDGKFDLIVTNPPYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -------------TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -------------hccCceeEEEEECCCCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 122378999999999865422111 11125668899999999999999999874
No 25
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.25 E-value=1.1e-10 Score=122.45 Aligned_cols=147 Identities=13% Similarity=0.131 Sum_probs=105.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||+|||+|..+..++.... ...|+|+|+|+..++.+++|+++++. .+.+.|...+..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~---------~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~------ 147 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD---------GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP------ 147 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC---------CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc------
Confidence 346899999999999999987642 35899999999999999999988763 456666543210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-Chhhhhhccc----ccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNV----GLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~----~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. .....||.|++||||...+.+.+ .|+.. .+.+ ..+......+.+|+..|.++||+||+++
T Consensus 148 ------------~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~-~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 148 ------------T-ALRGRVDILAANAPYVPTDAIALMPPEAR-DHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLL 213 (251)
T ss_pred ------------h-hcCCCEeEEEECCCCCCchhhhcCCHHHH-hCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 0 00146999999999998887765 34432 2221 2223455678999999999999999999
Q ss_pred EEeCCCCCcCcHHHHHHHHHHCCCcEEE
Q 004775 233 YSTCSMNPVENEAVVAEILRKCEGSVEL 260 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~g~~el 260 (731)
+.+.. ++..-|..++++++....+
T Consensus 214 l~~~~----~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 214 VETSE----RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred EEECc----chHHHHHHHHHHCCCCcee
Confidence 98653 2334466677776644433
No 26
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=2e-10 Score=122.51 Aligned_cols=108 Identities=26% Similarity=0.404 Sum_probs=79.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.++||++|||+|||||.+|.+|+..+.. +|.|+|+|+++.....|...++.. +|+.++..|+.. |..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~--------~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~-p~~- 195 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGP--------EGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY-PQK- 195 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCC--------CCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC-hhh-
Confidence 46899999999999999999999999853 689999999977666666655432 577888888764 210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH-HHHHHhhccCCCEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI-AMRGISLLKVGGRIV 232 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I-L~rAl~lLKpGG~LV 232 (731)
.......||+||+|+. .|+ |.++ +..+.++|||||+++
T Consensus 196 ----------------y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 196 ----------------YRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred ----------------hhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEEE
Confidence 0011246999999984 111 3333 457888999999999
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
.+
T Consensus 235 I~ 236 (293)
T PTZ00146 235 IS 236 (293)
T ss_pred EE
Confidence 84
No 27
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.18 E-value=2.8e-10 Score=114.52 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=105.5
Q ss_pred EecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 004775 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI 140 (731)
Q Consensus 61 ~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~ 140 (731)
..|+.++.+....++++++++|||+|||+|..|..++... +.+.|+|+|+|+.+++.+++++++++..++.
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~ 93 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVE 93 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeE
Confidence 4456666666667788999999999999999999987652 3579999999999999999999999888888
Q ss_pred EEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHH
Q 004775 141 VTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM 219 (731)
Q Consensus 141 vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~ 219 (731)
+.+.|+.. ++.+ ...+|+|.+|.. . . ..+++.
T Consensus 94 ~~~~d~~~~~~~~---------------------~~~~d~v~~~~~----~------------------~----~~~~l~ 126 (196)
T PRK07402 94 VIEGSAPECLAQL---------------------APAPDRVCIEGG----R------------------P----IKEILQ 126 (196)
T ss_pred EEECchHHHHhhC---------------------CCCCCEEEEECC----c------------------C----HHHHHH
Confidence 88888753 1110 124677776531 0 0 135788
Q ss_pred HHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC-cEEEEec
Q 004775 220 RGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDV 263 (731)
Q Consensus 220 rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g-~~elvd~ 263 (731)
.+.++|+|||++++.++++ +.-..+.+.++..+. .++.+.+
T Consensus 127 ~~~~~LkpgG~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 127 AVWQYLKPGGRLVATASSL---EGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHhcCCCeEEEEEeecH---HHHHHHHHHHHhcCCCCceEEEE
Confidence 8999999999999998874 444556666765432 3455544
No 28
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.18 E-value=1.7e-10 Score=120.84 Aligned_cols=159 Identities=26% Similarity=0.379 Sum_probs=106.7
Q ss_pred ccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004775 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (731)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR 133 (731)
.+.+.-||.-|.+ +....|++.||++||+.++|+|+.|..|+..++ |.|.|+..|.+..|++.++.|+++
T Consensus 18 ~rrtQIiYpkD~~--~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~--------p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 18 PRRTQIIYPKDIS--YILMRLDIRPGSRVLEAGTGSGSLTHALARAVG--------PTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp -SSS----HHHHH--HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCcceeeCchHH--HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhC--------CCeEEEccccCHHHHHHHHHHHHH
Confidence 3444556655655 344678999999999999999999999999986 479999999999999999999999
Q ss_pred cCCC-ceEEEeccccc--CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch
Q 004775 134 MCTA-NLIVTNHEAQH--FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL 210 (731)
Q Consensus 134 lg~~-ni~vt~~Da~~--fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L 210 (731)
+|.. ++.+.+.|... |+. .....||+|++|.| +-|.
T Consensus 88 ~gl~~~v~~~~~Dv~~~g~~~--------------------~~~~~~DavfLDlp-----------~Pw~---------- 126 (247)
T PF08704_consen 88 HGLDDNVTVHHRDVCEEGFDE--------------------ELESDFDAVFLDLP-----------DPWE---------- 126 (247)
T ss_dssp TTCCTTEEEEES-GGCG--ST--------------------T-TTSEEEEEEESS-----------SGGG----------
T ss_pred cCCCCCceeEecceecccccc--------------------cccCcccEEEEeCC-----------CHHH----------
Confidence 9985 78899888753 210 01257999999998 2232
Q ss_pred HHHHHHHHHHHHhhc-cCCCEEE-EEeCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceecc
Q 004775 211 HSLQVQIAMRGISLL-KVGGRIV-YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRD 283 (731)
Q Consensus 211 ~~lQ~~IL~rAl~lL-KpGG~LV-YSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~ 283 (731)
.+.++.+.| |+||+|+ ||.|- |.=.-...+|++++ |..+.+-+.+. +.|+|..
T Consensus 127 ------~i~~~~~~L~~~gG~i~~fsP~i----eQv~~~~~~L~~~g--f~~i~~~Evl~--------R~~~v~~ 181 (247)
T PF08704_consen 127 ------AIPHAKRALKKPGGRICCFSPCI----EQVQKTVEALREHG--FTDIETVEVLL--------REWEVRP 181 (247)
T ss_dssp ------GHHHHHHHE-EEEEEEEEEESSH----HHHHHHHHHHHHTT--EEEEEEEEEEE--------EEEEEET
T ss_pred ------HHHHHHHHHhcCCceEEEECCCH----HHHHHHHHHHHHCC--CeeeEEEEEEe--------eEEEEEe
Confidence 477888899 8999885 66552 33344455667765 44444432222 4687753
No 29
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.17 E-value=1e-09 Score=117.35 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=105.1
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~ 154 (731)
..++.+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++.. ++.+.+.|....
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----- 184 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF---------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----- 184 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-----
Confidence 3456799999999999999998763 3579999999999999999999999874 688888876431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
....+||.|++|||+...+.+...+..+. +.+.. +..-...+.+++..+.++|++||+
T Consensus 185 -----------------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 185 -----------------LPGRKYDLIVSNPPYVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred -----------------cCCCCccEEEECCCCCCccchhhCCHhhh-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 01146999999999988776654333332 23322 112335778899999999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
++.-+.. ..+-|..++...+
T Consensus 247 l~~e~g~-----~~~~v~~~~~~~~ 266 (284)
T TIGR03533 247 LVVEVGN-----SMEALEEAYPDVP 266 (284)
T ss_pred EEEEECc-----CHHHHHHHHHhCC
Confidence 9876542 2235667777654
No 30
>PRK04266 fibrillarin; Provisional
Probab=99.16 E-value=3.8e-10 Score=116.81 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=93.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
++++||++|||+|||+|.+|..++..+. .|.|+|+|+++.+++.+.+++++. .|+.+..+|+.. |...
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~---------~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~-~~~~ 135 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE---------EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK-PERY 135 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC---------CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC-cchh
Confidence 7889999999999999999999998753 489999999999999888777654 677888888754 2100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
... ...||+|++|.+ .| | ....+|..+.++|||||++|.
T Consensus 136 ----------------~~l-~~~~D~i~~d~~---------~p-----~----------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 136 ----------------AHV-VEKVDVIYQDVA---------QP-----N----------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ----------------hhc-cccCCEEEECCC---------Ch-----h----------HHHHHHHHHHHhcCCCcEEEE
Confidence 001 145999998865 11 1 012357889999999999998
Q ss_pred EeCC--CCCcCcH----HHHHHHHHHCCCcEEEEecC
Q 004775 234 STCS--MNPVENE----AVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 234 STCS--l~p~ENE----aVV~~~L~~~~g~~elvd~s 264 (731)
+..+ +.....+ ..+...|+..| |+.+...
T Consensus 175 ~v~~~~~d~~~~~~~~~~~~~~~l~~aG--F~~i~~~ 209 (226)
T PRK04266 175 AIKARSIDVTKDPKEIFKEEIRKLEEGG--FEILEVV 209 (226)
T ss_pred EEecccccCcCCHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 5332 2211121 12336666654 5555543
No 31
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.15 E-value=7.1e-10 Score=114.59 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=103.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+.+|||+|||+|..+..++... +...|+++|+++..+..++.+++..+..++.+.+.|+...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-------- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-------- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--------
Confidence 34599999999999999998764 3468999999999999999999998888888888876441
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....+||.|++|||+...+.+.........|.+.. +..-......++.++.++|++||++++
T Consensus 150 --------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 --------------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred --------------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 01257999999999998776543222222222111 122234456799999999999999998
Q ss_pred EeCCCCCcCcHHHHHHHHHHCC
Q 004775 234 STCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~ 255 (731)
. ++. ...+-+.++|++.+
T Consensus 216 ~-~~~---~~~~~~~~~l~~~g 233 (251)
T TIGR03534 216 E-IGY---DQGEAVRALFEAAG 233 (251)
T ss_pred E-ECc---cHHHHHHHHHHhCC
Confidence 6 333 33455677777765
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.15 E-value=3.7e-10 Score=112.70 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=96.8
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
....|++.++.+|||+|||+|..+..++... +.+.|+++|+++..+..+++++++++..++.+.+.|+...
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~ 93 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQF---------PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE 93 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence 3345677889999999999999999998763 3579999999999999999999988887788877765320
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
. ...||+|+++.. .+ .+ ..++..+.++|++||
T Consensus 94 ----------------------~-~~~~D~v~~~~~---~~------------------~~----~~~l~~~~~~Lk~gG 125 (187)
T PRK08287 94 ----------------------L-PGKADAIFIGGS---GG------------------NL----TAIIDWSLAHLHPGG 125 (187)
T ss_pred ----------------------c-CcCCCEEEECCC---cc------------------CH----HHHHHHHHHhcCCCe
Confidence 0 146999997531 01 01 246788899999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+++++... .++...+..++++.+
T Consensus 126 ~lv~~~~~---~~~~~~~~~~l~~~g 148 (187)
T PRK08287 126 RLVLTFIL---LENLHSALAHLEKCG 148 (187)
T ss_pred EEEEEEec---HhhHHHHHHHHHHCC
Confidence 99987544 377777888898876
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.14 E-value=2.3e-10 Score=112.90 Aligned_cols=144 Identities=22% Similarity=0.240 Sum_probs=98.1
Q ss_pred ccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec
Q 004775 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 144 (731)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~ 144 (731)
.++.+....+...++.+|||+|||+|..+..++... +...|+|+|+++..+..++.|+++++..++.+...
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~---------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG---------PDAKVTAVDINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS---------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence 344444444444578899999999999999988753 35689999999999999999999999887888887
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (731)
|..... ...+||.|+++||....+ ........+++..|.++
T Consensus 89 d~~~~~----------------------~~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~ 129 (170)
T PF05175_consen 89 DLFEAL----------------------PDGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRY 129 (170)
T ss_dssp STTTTC----------------------CTTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHH
T ss_pred cccccc----------------------cccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHh
Confidence 764421 136899999999932211 11234667899999999
Q ss_pred ccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 225 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 225 LKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
||+||+++...-+ ....+..+++.+ +.++.+.
T Consensus 130 Lk~~G~l~lv~~~--~~~~~~~l~~~f----~~~~~~~ 161 (170)
T PF05175_consen 130 LKPGGRLFLVINS--HLGYERLLKELF----GDVEVVA 161 (170)
T ss_dssp EEEEEEEEEEEET--TSCHHHHHHHHH----S--EEEE
T ss_pred ccCCCEEEEEeec--CCChHHHHHHhc----CCEEEEE
Confidence 9999988543222 233444444444 3455544
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.13 E-value=2.2e-10 Score=119.08 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=93.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.||++|||+|||+|-.|..+++..+ +|.|+++|+|..++...+..++..+..++.++.+||..+|
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g---------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--- 114 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVG---------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--- 114 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcC---------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC---
Confidence 4455999999999999999999999853 6999999999999999999999888777999999999976
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
+++..||+|.+ +.| +|.-+ ...+.|+.+.+.|||||+++-
T Consensus 115 ------------------f~D~sFD~vt~-----~fg-lrnv~----------------d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 115 ------------------FPDNSFDAVTI-----SFG-LRNVT----------------DIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred ------------------CCCCccCEEEe-----eeh-hhcCC----------------CHHHHHHHHHHhhcCCeEEEE
Confidence 23478999987 111 22111 235689999999999997764
Q ss_pred EeCCCCCcCcHHH
Q 004775 234 STCSMNPVENEAV 246 (731)
Q Consensus 234 STCSl~p~ENEaV 246 (731)
+.+++-.+.-+
T Consensus 155 --le~~~p~~~~~ 165 (238)
T COG2226 155 --LEFSKPDNPVL 165 (238)
T ss_pred --EEcCCCCchhh
Confidence 45555555433
No 35
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.13 E-value=1.3e-10 Score=120.92 Aligned_cols=129 Identities=26% Similarity=0.362 Sum_probs=85.4
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.++.+++|.+|||+|||+|..|..|++.++ +.|.|+++|+++..++.+++++++.+..++.++..||..+|-
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 446788999999999999999998887654 368999999999999999999999888899999999988752
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....||.|.| +-| +|.-| .+.+.|+...++|||||++
T Consensus 113 ---------------------~d~sfD~v~~-----~fg-lrn~~----------------d~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 113 ---------------------PDNSFDAVTC-----SFG-LRNFP----------------DRERALREMYRVLKPGGRL 149 (233)
T ss_dssp ----------------------TT-EEEEEE-----ES--GGG-S----------------SHHHHHHHHHHHEEEEEEE
T ss_pred ---------------------CCCceeEEEH-----Hhh-HHhhC----------------CHHHHHHHHHHHcCCCeEE
Confidence 2378999986 122 11111 1356899999999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHC
Q 004775 232 VYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
+.-- ++..+|. .+..+.+-+
T Consensus 150 ~ile--~~~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 150 VILE--FSKPRNP-LLRALYKFY 169 (233)
T ss_dssp EEEE--EEB-SSH-HHHHHHHH-
T ss_pred EEee--ccCCCCc-hhhceeeee
Confidence 8643 3444554 555555544
No 36
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.12 E-value=5.3e-10 Score=114.26 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=85.3
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+|+++++++|||+|||+|..|..|+...+. .|.|+++|+++..+..+++++++++..++.+...|+.....
T Consensus 71 ~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~--------~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 71 ELLELKPGMKVLEIGTGSGYQAAVLAEIVGR--------DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHhCCCCcCEEEEECCCccHHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 3568899999999999999999999887542 58899999999999999999999999899999888765211
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....||+|++++++.. +.....+.|++||+|
T Consensus 143 ---------------------~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 143 ---------------------PLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGIL 173 (215)
T ss_pred ---------------------ccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEE
Confidence 1257999999876421 122346789999999
Q ss_pred EEE
Q 004775 232 VYS 234 (731)
Q Consensus 232 VYS 234 (731)
+..
T Consensus 174 v~~ 176 (215)
T TIGR00080 174 VMP 176 (215)
T ss_pred EEE
Confidence 975
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.10 E-value=1.6e-09 Score=108.44 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=107.8
Q ss_pred HHHHHhhcccccCcEEecCc-------cccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEe
Q 004775 46 RFHKFLKLENEIGNITRQEA-------VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (731)
Q Consensus 46 ~~~~~l~~~~~~G~i~~Qd~-------~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (731)
.|..||+..++..+++|--. ..+-...++..-++.+|||+|||+|..+..++.. . +.+.|+|+|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~-~--------~~~~V~~iD 73 (181)
T TIGR00138 3 AYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA-R--------PELKLTLLE 73 (181)
T ss_pred HHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH-C--------CCCeEEEEe
Confidence 34555666666666666433 1111111222224899999999999988888754 2 357899999
Q ss_pred CCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004775 119 LDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (731)
Q Consensus 119 id~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~ 198 (731)
.++.++.++.+++++++..++.+.+.|+..++. ...||.|+++. +
T Consensus 74 ~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----------------------~~~fD~I~s~~-------~------ 118 (181)
T TIGR00138 74 SNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----------------------EEQFDVITSRA-------L------ 118 (181)
T ss_pred CcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----------------------cCCccEEEehh-------h------
Confidence 999999999999999998889999988876421 25799999842 0
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC-CcEEEEec
Q 004775 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE-GSVELVDV 263 (731)
Q Consensus 199 ~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~-g~~elvd~ 263 (731)
+. ...++..+.++|+|||+++.. .....+..+..+.+++. ..++.++.
T Consensus 119 ------------~~-~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 119 ------------AS-LNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred ------------hC-HHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeec
Confidence 00 123566678899999999976 45666777777777632 23666665
No 38
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=3.7e-09 Score=104.18 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=102.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFP 150 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n--i~vt~~Da~~fp 150 (731)
.+...++.+|||+|||.|..+..++.. ...|+|+|+++..+..++++++..+..+ +.+..+|....
T Consensus 18 ~~~~~~~~~vLd~G~G~G~~~~~l~~~-----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 18 NAVDKKGDRVLEVGTGSGIVAIVAAKN-----------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred hhhccCCCEEEEEccccCHHHHHHHhh-----------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 344578899999999999999988775 2689999999999999999988877654 66666664331
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
.....||.|++++|+...+...+.. .|..+.......-......++..+.++||+||.
T Consensus 86 ---------------------~~~~~~d~vi~n~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 86 ---------------------FRGDKFDVILFNPPYLPTEEEEEWD-DWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ---------------------ccccCceEEEECCCcCCCCchhhhh-hhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 0113799999999976544322211 122222222222234567889999999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+++..+++. +..-+..++.+.+
T Consensus 144 ~~~~~~~~~---~~~~l~~~~~~~g 165 (188)
T PRK14968 144 ILLLQSSLT---GEDEVLEYLEKLG 165 (188)
T ss_pred EEEEEcccC---CHHHHHHHHHHCC
Confidence 998887763 3344566777765
No 39
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=3.2e-09 Score=111.60 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=104.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
...++.+|||+|||+|..+..++..+ +...|+|+|+++..+..++.+++.....++.+.+.|....
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----- 170 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER---------PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----- 170 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----
Confidence 45678899999999999999998874 3578999999999999999998833445788887776321
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
....+||.|+++|||...+.+...+.....+.+.. +......+.+++..+.++|++||+
T Consensus 171 -----------------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 171 -----------------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred -----------------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 01257999999999998876542221122222221 223446778899999999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+++.+ .. ...+.+..++++.+
T Consensus 234 l~~e~-g~---~~~~~~~~~l~~~g 254 (275)
T PRK09328 234 LLLEI-GY---DQGEAVRALLAAAG 254 (275)
T ss_pred EEEEE-Cc---hHHHHHHHHHHhCC
Confidence 99864 22 22344667777654
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.07 E-value=3.8e-09 Score=106.40 Aligned_cols=121 Identities=23% Similarity=0.241 Sum_probs=93.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
+++.+|||+|||+|..+..++... +.+.|+|+|+++.++..++++++.++..++.+.+.|+..++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~---------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----- 109 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR---------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----- 109 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-----
Confidence 458999999999999999888753 358999999999999999999999998888888888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
..+||.|+++. .+ + + ..++..+.++|||||++++.-.
T Consensus 110 -----------------~~~fDlV~~~~----~~----~--------------~----~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 110 -----------------EEKFDVVTSRA----VA----S--------------L----SDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----------------CCCccEEEEcc----cc----C--------------H----HHHHHHHHHhcCCCeEEEEEeC
Confidence 25799999742 00 0 1 3467888999999999998854
Q ss_pred CCCCcCcHHHHHHHHHHCCCcE
Q 004775 237 SMNPVENEAVVAEILRKCEGSV 258 (731)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~g~~ 258 (731)
. ...+.+.++.+..|..+
T Consensus 147 ~----~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 147 R----DPEEEIAELPKALGGKV 164 (187)
T ss_pred C----ChHHHHHHHHHhcCceE
Confidence 4 35555666666666553
No 41
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.06 E-value=7.1e-10 Score=113.57 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=82.1
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+|+++||++|||+++|+|..|+.|+.+++. .|.|+++|.++..++.+++++.+++..|+.+..+|+..-
T Consensus 66 ~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~--------~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g-- 135 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGTGSGYQAALLAHLVGP--------VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG-- 135 (209)
T ss_dssp HHTTC-TT-EEEEES-TTSHHHHHHHHHHST--------TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT--
T ss_pred HHHhcCCCCEEEEecCCCcHHHHHHHHhcCc--------cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc--
Confidence 4678999999999999999999999998864 699999999999999999999999999999999987541
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
......||+|++.+.| .+.|..| ++.||+||+|
T Consensus 136 -------------------~~~~apfD~I~v~~a~------~~ip~~l----------------------~~qL~~gGrL 168 (209)
T PF01135_consen 136 -------------------WPEEAPFDRIIVTAAV------PEIPEAL----------------------LEQLKPGGRL 168 (209)
T ss_dssp -------------------TGGG-SEEEEEESSBB------SS--HHH----------------------HHTEEEEEEE
T ss_pred -------------------cccCCCcCEEEEeecc------chHHHHH----------------------HHhcCCCcEE
Confidence 1123679999996654 3445544 4578999999
Q ss_pred EEE
Q 004775 232 VYS 234 (731)
Q Consensus 232 VYS 234 (731)
|.-
T Consensus 169 V~p 171 (209)
T PF01135_consen 169 VAP 171 (209)
T ss_dssp EEE
T ss_pred EEE
Confidence 963
No 42
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.6e-09 Score=117.01 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=102.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~ 157 (731)
..+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++.. ++.+.+.|.....
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~---------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------- 197 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF---------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------- 197 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-------
Confidence 3689999999999999988763 3578999999999999999999999874 5888888764310
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccc----cchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~----~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++|||+.+.+.+...+..+. +.|..+ ..-.....+|+..+.++|+|||++++
T Consensus 198 ---------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 198 ---------------PGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ---------------CCCCccEEEECCCCCCccchhhcCHhhc-cCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1146999999999999877654443333 344322 12235678899999999999999987
Q ss_pred EeCCCCCcCcHHHHHHHHHHCC
Q 004775 234 STCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~ 255 (731)
-+= . +.+-+...+...+
T Consensus 262 E~g---~--~~~~~~~~~~~~~ 278 (307)
T PRK11805 262 EVG---N--SRVHLEEAYPDVP 278 (307)
T ss_pred EEC---c--CHHHHHHHHhhCC
Confidence 522 1 2233666676543
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.04 E-value=3.6e-09 Score=96.79 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=85.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++++|||+|||+|..+..++..+ +.+.|+++|+++.+++.++++++.++..++.+...|+..+..
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV---------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 3466788999999999999999998864 347999999999999999999999888888888777654211
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....+||.|+++.+ .+ ...+++..+.++||+||+++
T Consensus 84 -------------------~~~~~~D~v~~~~~------------------------~~-~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 84 -------------------DSLPEPDRVFIGGS------------------------GG-LLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred -------------------hhcCCCCEEEECCc------------------------ch-hHHHHHHHHHHHcCCCCEEE
Confidence 01247999998532 00 12378999999999999998
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
.+.
T Consensus 120 ~~~ 122 (124)
T TIGR02469 120 LNA 122 (124)
T ss_pred EEe
Confidence 764
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=5.9e-09 Score=111.22 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=99.7
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~ 156 (731)
++.+|||+|||+|..+..++... +...|+|+|+|+..++.+++|+++++..+ +.+...|.... +
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~---------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~---- 178 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEF---------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--L---- 178 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--C----
Confidence 33699999999999999988764 24689999999999999999999998764 88887775431 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...+||.|++|||+.....+...++... |.|.. +..-.....+|+..+.++|++||.|+
T Consensus 179 ----------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 179 ----------------AGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ----------------cCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 1137999999999987654332232211 22221 12223478889999999999999999
Q ss_pred EEeCCCCCcCcHHHHHHHHH
Q 004775 233 YSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~ 252 (731)
+.++.- . ...|.+++.
T Consensus 242 ~e~g~~---q-~~~~~~~~~ 257 (284)
T TIGR00536 242 CEIGNW---Q-QKSLKELLR 257 (284)
T ss_pred EEECcc---H-HHHHHHHHH
Confidence 886643 2 334455565
No 45
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=1.9e-09 Score=110.40 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=70.9
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.++++++|++|||+|||+|..|..+++.++. .|.|+++|+++..+..+++++++++..++.+.+.|+....
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~--------~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~- 140 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--------SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY- 140 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 3568899999999999999999999988643 5899999999999999999999999889999999876521
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecC
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDV 184 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~ 184 (731)
.....||+|+++.
T Consensus 141 --------------------~~~~~fD~I~~~~ 153 (212)
T PRK13942 141 --------------------EENAPYDRIYVTA 153 (212)
T ss_pred --------------------CcCCCcCEEEECC
Confidence 1125799999854
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.02 E-value=2.1e-09 Score=109.21 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=92.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc-ccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA-QHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da-~~fp~~~~~~ 156 (731)
++.+|||+|||+|..+..+++.. |.+.|+|+|+++.++..+++++++.+..++.+.+.|+ ..++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~---------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~---- 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN---------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM---- 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC---------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----
Confidence 68899999999999999998864 3468999999999999999999988888899999988 543310
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.....||.|++..|. . |...........+..+|.++.++|||||+++++|+
T Consensus 107 ---------------~~~~~~D~V~~~~~~-----------p---~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 107 ---------------FPDGSLDRIYLNFPD-----------P---WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ---------------cCccccceEEEECCC-----------C---CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 112579999986541 1 11100000111356789999999999999999875
Q ss_pred CCCCcCcHHHHHHHHH
Q 004775 237 SMNPVENEAVVAEILR 252 (731)
Q Consensus 237 Sl~p~ENEaVV~~~L~ 252 (731)
++..+..+++
T Consensus 158 ------~~~~~~~~~~ 167 (202)
T PRK00121 158 ------WEGYAEYMLE 167 (202)
T ss_pred ------CHHHHHHHHH
Confidence 4455555554
No 47
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.9e-09 Score=110.61 Aligned_cols=138 Identities=21% Similarity=0.245 Sum_probs=103.9
Q ss_pred cccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
..+.-|+--|++ +.+..+++.||++|||.++|+|..|+.||..++ |.|.|+..|+...+++.+.+|++.+
T Consensus 73 R~tQiIyPKD~~--~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg--------~~G~v~tyE~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 73 RRTQIIYPKDAG--YIVARLGISPGSRVLEAGTGSGALTAYLARAVG--------PEGHVTTYEIREDFAKTARENLSEF 142 (256)
T ss_pred CCCceecCCCHH--HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC--------CCceEEEEEecHHHHHHHHHHHHHh
Confidence 333444444443 556678999999999999999999999998876 4799999999999999999999999
Q ss_pred CCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004775 135 CTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (731)
Q Consensus 135 g~~n-i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (731)
+..+ +.+...|....- ....||+|++|.| +-|
T Consensus 143 ~l~d~v~~~~~Dv~~~~----------------------~~~~vDav~LDmp-----------~PW-------------- 175 (256)
T COG2519 143 GLGDRVTLKLGDVREGI----------------------DEEDVDAVFLDLP-----------DPW-------------- 175 (256)
T ss_pred ccccceEEEeccccccc----------------------cccccCEEEEcCC-----------ChH--------------
Confidence 8866 666666655421 1248999999998 333
Q ss_pred HHHHHHHHHhhccCCCEEE-EEeCCCCCcCcHHHHHHHHHHCC
Q 004775 214 QVQIAMRGISLLKVGGRIV-YSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LV-YSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+.|.++..+|||||.++ |+.|. |+=.-+...|++.+
T Consensus 176 --~~le~~~~~Lkpgg~~~~y~P~v----eQv~kt~~~l~~~g 212 (256)
T COG2519 176 --NVLEHVSDALKPGGVVVVYSPTV----EQVEKTVEALRERG 212 (256)
T ss_pred --HHHHHHHHHhCCCcEEEEEcCCH----HHHHHHHHHHHhcC
Confidence 36889999999999876 66554 33333445555553
No 48
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.7e-09 Score=107.53 Aligned_cols=105 Identities=18% Similarity=0.302 Sum_probs=85.9
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
...+|+++||++||+++||+|.-|+.|+++ .|.|+++|++..-++.++.|++++|..|+.+.+.|+..
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-----------~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~- 131 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARL-----------VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK- 131 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHH-----------hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc-
Confidence 345789999999999999999999999998 36999999999999999999999999999999999875
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
.......||+|++.+-+ ..-|+.| ++.||+||
T Consensus 132 --------------------G~~~~aPyD~I~Vtaaa------~~vP~~L----------------------l~QL~~gG 163 (209)
T COG2518 132 --------------------GWPEEAPYDRIIVTAAA------PEVPEAL----------------------LDQLKPGG 163 (209)
T ss_pred --------------------CCCCCCCcCEEEEeecc------CCCCHHH----------------------HHhcccCC
Confidence 11223689999985431 2234433 45799999
Q ss_pred EEEEE
Q 004775 230 RIVYS 234 (731)
Q Consensus 230 ~LVYS 234 (731)
+||.-
T Consensus 164 rlv~P 168 (209)
T COG2518 164 RLVIP 168 (209)
T ss_pred EEEEE
Confidence 99975
No 49
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.96 E-value=9.3e-09 Score=102.84 Aligned_cols=118 Identities=23% Similarity=0.226 Sum_probs=79.0
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+++|++|||+|||||+.|.+++..... .+.|+|+|+++.+ ...++.+++.|+...+.+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~--------~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGG--------KGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCC--------CceEEEEeccccc-----------cCCCceEEEeeCCChhHHHH
Confidence 4578999999999999999999887542 5789999999864 23456677777654211000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
. ........||+|++|+++...|. |+...... ...+..+|..+.++|+|||+++..
T Consensus 90 ------------l-~~~~~~~~~D~V~~~~~~~~~g~----------~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 90 ------------I-RERVGDDKVDVVMSDAAPNISGY----------WDIDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ------------H-HHHhCCCCccEEEcCCCCCCCCC----------ccccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 0 00012357999999976544442 22111111 134678999999999999999986
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
.
T Consensus 146 ~ 146 (188)
T TIGR00438 146 V 146 (188)
T ss_pred E
Confidence 3
No 50
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=3.1e-09 Score=115.05 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+..++.+|||+|||.|..+..++.. ...|+|+|+++..++.++++++.++..++.+.+.|+..+...
T Consensus 170 ~~~~~~~VLDl~cG~G~~sl~la~~-----------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-- 236 (315)
T PRK03522 170 RELPPRSMWDLFCGVGGFGLHCATP-----------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-- 236 (315)
T ss_pred HhcCCCEEEEccCCCCHHHHHHHhc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--
Confidence 3346789999999999999998863 368999999999999999999999998899999988764210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG 190 (731)
....||.|++|||++|.+
T Consensus 237 ------------------~~~~~D~Vv~dPPr~G~~ 254 (315)
T PRK03522 237 ------------------QGEVPDLVLVNPPRRGIG 254 (315)
T ss_pred ------------------cCCCCeEEEECCCCCCcc
Confidence 113699999999987654
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=6.9e-09 Score=105.56 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=82.2
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp 150 (731)
.+|+++++++|||+|||+|..|..+++.++. .|.|+++|+++..+..+++++++++.. ++.+.+.|+....
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~--------~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIER--------RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 3467889999999999999999999988642 579999999999999999999998875 4788888876421
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
.....||+|+++.... . +....++.|++||+
T Consensus 138 ---------------------~~~~~fD~Ii~~~~~~------~----------------------~~~~l~~~L~~gG~ 168 (205)
T PRK13944 138 ---------------------EKHAPFDAIIVTAAAS------T----------------------IPSALVRQLKDGGV 168 (205)
T ss_pred ---------------------ccCCCccEEEEccCcc------h----------------------hhHHHHHhcCcCcE
Confidence 0125799999975420 0 11234678999999
Q ss_pred EEEE
Q 004775 231 IVYS 234 (731)
Q Consensus 231 LVYS 234 (731)
|+..
T Consensus 169 lvi~ 172 (205)
T PRK13944 169 LVIP 172 (205)
T ss_pred EEEE
Confidence 9875
No 52
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.94 E-value=7.4e-09 Score=106.23 Aligned_cols=112 Identities=25% Similarity=0.346 Sum_probs=87.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.++++++.+|||+|||+|..+..+++.++ +.+.|+++|+++..+..+++++++.+..++.+...|+..++.
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 110 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVG--------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF- 110 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC-
Confidence 56788999999999999999999988754 357999999999999999999988888888888888866431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++.-. ++..++ ..++|..+.++|+|||+++
T Consensus 111 --------------------~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --------------------CCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEE
Confidence 1257999987422 111111 1357889999999999998
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
..+
T Consensus 149 ~~~ 151 (231)
T TIGR02752 149 CLE 151 (231)
T ss_pred EEE
Confidence 763
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.94 E-value=8.1e-09 Score=99.52 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=89.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
+.+.+|||+|||.|..+..|+..+. +.+.|+++|+++..+..++.++++++..++.+.+.|...++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~--------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~---- 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN--------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE---- 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST--------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC----
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC--------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc----
Confidence 5688999999999999999986543 3688999999999999999999999999999999998875421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.. ..||.|++..++. .......++.++.++|++||+++.+.+
T Consensus 70 ---------------~~-~~~D~I~~~~~l~----------------------~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 70 ---------------LE-EKFDIIISNGVLH----------------------HFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ---------------SS-TTEEEEEEESTGG----------------------GTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------cC-CCeeEEEEcCchh----------------------hccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 11 5899999976540 011234678999999999999998877
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 112 ~ 112 (152)
T PF13847_consen 112 N 112 (152)
T ss_dssp E
T ss_pred C
Confidence 7
No 54
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.93 E-value=9.2e-09 Score=115.84 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=83.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC-CCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF-PGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f-p~~ 152 (731)
+++.++++|||+|||+|..++.++.. ...|+|+|+++..++.+++|++.++..|+.+...|+..+ +..
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~-----------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQ-----------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHh-----------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 45678899999999999999998865 358999999999999999999999998999999988653 110
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
......||+|++|||.+|.. ..++.. +..+++ +++|
T Consensus 357 ------------------~~~~~~~D~vi~dPPr~G~~------------------------~~~l~~-l~~l~~-~~iv 392 (431)
T TIGR00479 357 ------------------PWAGQIPDVLLLDPPRKGCA------------------------AEVLRT-IIELKP-ERIV 392 (431)
T ss_pred ------------------HhcCCCCCEEEECcCCCCCC------------------------HHHHHH-HHhcCC-CEEE
Confidence 01124699999999976532 122332 334678 4689
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
|.+|.-
T Consensus 393 yvsc~p 398 (431)
T TIGR00479 393 YVSCNP 398 (431)
T ss_pred EEcCCH
Confidence 998963
No 55
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.91 E-value=2.1e-08 Score=111.82 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=100.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..++... +...|+|+|+|+..++.+++|+++++. ++.+.+.|......
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~---------p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l---- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER---------PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM---- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc----
Confidence 4567799999999999998887652 357899999999999999999998875 67788777643110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....+||.|+||||....+.....+.. .++.|.. +..--...++|+..+.++|+|||.+
T Consensus 315 ----------------~~~~~FDLIVSNPPYI~~~e~~l~~~~-v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~l 377 (423)
T PRK14966 315 ----------------PSEGKWDIIVSNPPYIENGDKHLLQGD-LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFL 377 (423)
T ss_pred ----------------ccCCCccEEEECCCCCCcchhhhcchh-hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEE
Confidence 011469999999998766542111111 1122211 1122234678999999999999998
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 232 VYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
++.. .....+-|.+++++.+
T Consensus 378 ilEi----G~~Q~e~V~~ll~~~G 397 (423)
T PRK14966 378 LLEH----GFDQGAAVRGVLAENG 397 (423)
T ss_pred EEEE----CccHHHHHHHHHHHCC
Confidence 7652 2244556677777654
No 56
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.2e-08 Score=103.75 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=82.2
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+|+++++++|||+|||+|..|..++.+. +.|+++|+++..+..+++++++++..++.+...|+....
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~-----------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 139 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV-----------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW- 139 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHh-----------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-
Confidence 45788999999999999999998777652 579999999999999999999999888888888764310
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||+|+++.+|.. +.....++|+|||+|
T Consensus 140 --------------------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~l 171 (212)
T PRK00312 140 --------------------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGIL 171 (212)
T ss_pred --------------------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEE
Confidence 01257999999875421 123346789999999
Q ss_pred EEEeC
Q 004775 232 VYSTC 236 (731)
Q Consensus 232 VYSTC 236 (731)
+.+..
T Consensus 172 v~~~~ 176 (212)
T PRK00312 172 VAPVG 176 (212)
T ss_pred EEEEc
Confidence 98754
No 57
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.89 E-value=7.8e-09 Score=116.95 Aligned_cols=87 Identities=23% Similarity=0.184 Sum_probs=70.8
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+++.++.+|||+|||+|..|+.++.. .+.|+|+|+|+..++.++.|++.++..++.+.+.|+..+..-
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~-----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~- 360 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQ-----------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD- 360 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHh-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-
Confidence 46678999999999999999998875 258999999999999999999999988899999988653100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
.......||+|++|||++|
T Consensus 361 ----------------~~~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 361 ----------------QPWALGGFDKVLLDPPRAG 379 (443)
T ss_pred ----------------hhhhcCCCCEEEECcCCcC
Confidence 0011246999999999876
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=107.48 Aligned_cols=116 Identities=20% Similarity=0.310 Sum_probs=88.5
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
..+..+.+|++|||+|||+|..+.+++..++ +.+.|+|+|+++.++..++++...++..++.+...|+..++
T Consensus 70 ~~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~ 141 (272)
T PRK11873 70 TALAELKPGETVLDLGSGGGFDCFLAARRVG--------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP 141 (272)
T ss_pred hhhccCCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC
Confidence 3446788999999999999988888877654 35799999999999999999998888888888777765543
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||.|+++.- +...|+ ..+++..+.++|||||+
T Consensus 142 ~---------------------~~~~fD~Vi~~~v------~~~~~d----------------~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 142 V---------------------ADNSVDVIISNCV------INLSPD----------------KERVFKEAFRVLKPGGR 178 (272)
T ss_pred C---------------------CCCceeEEEEcCc------ccCCCC----------------HHHHHHHHHHHcCCCcE
Confidence 1 1257999997531 111111 13578999999999999
Q ss_pred EEEEeCC
Q 004775 231 IVYSTCS 237 (731)
Q Consensus 231 LVYSTCS 237 (731)
|+.+.-.
T Consensus 179 l~i~~~~ 185 (272)
T PRK11873 179 FAISDVV 185 (272)
T ss_pred EEEEEee
Confidence 9987543
No 59
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.87 E-value=1.4e-08 Score=106.02 Aligned_cols=154 Identities=16% Similarity=0.239 Sum_probs=114.2
Q ss_pred cccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEec
Q 004775 66 VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNH 144 (731)
Q Consensus 66 ~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~ 144 (731)
-++|...+..+....+|||+|||.|.-.+.+|+.. +...|+++|+++....++.++++..+. .++.+.+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~---------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRT---------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccC---------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 34455556677779999999999999988887763 247999999999999999999988775 47899999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (731)
|...|... ....+||.|+|+||.--.|.- ++++-.+.- ........-..+++.|.++
T Consensus 103 Di~~~~~~-------------------~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~---Ar~e~~~~le~~i~~a~~~ 159 (248)
T COG4123 103 DIKEFLKA-------------------LVFASFDLIICNPPYFKQGSR-LNENPLRAI---ARHEITLDLEDLIRAAAKL 159 (248)
T ss_pred hHHHhhhc-------------------ccccccCEEEeCCCCCCCccc-cCcChhhhh---hhhhhcCCHHHHHHHHHHH
Confidence 98887532 112479999999998887765 333321110 0011111235689999999
Q ss_pred ccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 225 LKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 225 LKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
||+||++.+. +|.|.=.-+-..+++++
T Consensus 160 lk~~G~l~~V----~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 160 LKPGGRLAFV----HRPERLAEIIELLKSYN 186 (248)
T ss_pred ccCCCEEEEE----ecHHHHHHHHHHHHhcC
Confidence 9999999887 88888777788888765
No 60
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=2.3e-08 Score=105.58 Aligned_cols=116 Identities=20% Similarity=0.303 Sum_probs=86.2
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH---cCCCceEEEeccccc
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR---MCTANLIVTNHEAQH 148 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR---lg~~ni~vt~~Da~~ 148 (731)
..+.++++++|||+|||+|..+..+++.++ +.+.|+|+|+|+.++..++++... .+..++.+.+.|+..
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 346788999999999999999888877653 357999999999999998776532 234578888888877
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
+|- ....||.|++-- +++.-+ ...++|..+.+.||||
T Consensus 139 lp~---------------------~~~sfD~V~~~~------~l~~~~----------------d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 139 LPF---------------------DDCYFDAITMGY------GLRNVV----------------DRLKAMQEMYRVLKPG 175 (261)
T ss_pred CCC---------------------CCCCEeEEEEec------ccccCC----------------CHHHHHHHHHHHcCcC
Confidence 542 125799998621 111111 1245789999999999
Q ss_pred CEEEEEeCCC
Q 004775 229 GRIVYSTCSM 238 (731)
Q Consensus 229 G~LVYSTCSl 238 (731)
|+++.++.+-
T Consensus 176 G~l~i~d~~~ 185 (261)
T PLN02233 176 SRVSILDFNK 185 (261)
T ss_pred cEEEEEECCC
Confidence 9999886654
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.83 E-value=3.7e-08 Score=100.80 Aligned_cols=117 Identities=23% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+++|.+|||+|||||++|..+++.++. .|.|+|+|+++. ...+++.+.++|+...+.+.-
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~--------~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~- 108 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGD--------KGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKA- 108 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCC--------CceEEEEecccc-----------cCCCCcEEEecCCCChHHHHH-
Confidence 478999999999999999999988642 589999999881 134578888888776321100
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
. ........||.|++|+...-.|.. ..+. .....+...+|..+.++|||||+++..+
T Consensus 109 -----------i-~~~~~~~~~D~V~S~~~~~~~g~~--~~d~---------~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 109 -----------L-LERVGDSKVQVVMSDMAPNMSGTP--AVDI---------PRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred -----------H-HHHhCCCCCCEEecCCCCccCCCh--HHHH---------HHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 001123679999998621111110 0010 1111223578999999999999998863
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.82 E-value=7.1e-08 Score=105.85 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=91.6
Q ss_pred CccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe
Q 004775 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 143 (731)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~ 143 (731)
|..|.+....|......+|||+|||.|..+..++... |...|+++|+|+..+..++.++++.+... .+..
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~ 251 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS---------PKIRLTLSDVSAAALESSRATLAANGLEG-EVFA 251 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEE
Confidence 3344444444444455689999999999999888762 35689999999999999999999887643 4444
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
.|.... ....||.|++++|- .+|. ......-.+++..+.+
T Consensus 252 ~D~~~~-----------------------~~~~fDlIvsNPPF-H~g~----------------~~~~~~~~~~i~~a~~ 291 (342)
T PRK09489 252 SNVFSD-----------------------IKGRFDMIISNPPF-HDGI----------------QTSLDAAQTLIRGAVR 291 (342)
T ss_pred cccccc-----------------------cCCCccEEEECCCc-cCCc----------------cccHHHHHHHHHHHHH
Confidence 443220 12579999999982 1110 0011233568999999
Q ss_pred hccCCCEEEEEeCCCCCcC
Q 004775 224 LLKVGGRIVYSTCSMNPVE 242 (731)
Q Consensus 224 lLKpGG~LVYSTCSl~p~E 242 (731)
+||+||++++.++++.|.+
T Consensus 292 ~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 292 HLNSGGELRIVANAFLPYP 310 (342)
T ss_pred hcCcCCEEEEEEeCCCChH
Confidence 9999999999999987765
No 63
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=8.6e-08 Score=102.46 Aligned_cols=142 Identities=19% Similarity=0.242 Sum_probs=99.5
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+|||+|+|+|.-++.++... +...|+|+|+|+..++.++.|++++|..++.++..| .|..+
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~-------- 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPL-------- 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--ccccc--------
Confidence 79999999999998887763 357999999999999999999999998665555543 23221
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcc-------ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTL-------RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl-------rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
..+||.|+++||.-..-.. +..|.. .-|.-. .--..-.+|+..+...|++||.++.
T Consensus 174 -------------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~-Al~~g~---dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 174 -------------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLL-ALVGGG---DGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred -------------CCceeEEEeCCCCCCCcccccChhhhccCHHH-HHccCc---cHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 1489999999998665411 122221 011111 2234678899999999999888776
Q ss_pred EeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 234 STCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
- ++. ...+.|.+++.+.+. +..+..
T Consensus 237 e-~g~---~q~~~v~~~~~~~~~-~~~v~~ 261 (280)
T COG2890 237 E-IGL---TQGEAVKALFEDTGF-FEIVET 261 (280)
T ss_pred E-ECC---CcHHHHHHHHHhcCC-ceEEEE
Confidence 5 555 335666777777664 554444
No 64
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=9.5e-08 Score=95.55 Aligned_cols=127 Identities=18% Similarity=0.294 Sum_probs=98.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+.+.-.|..|+|+|||+|..++.++- |+ .-.|+|+|+|++.++.++.|+.++ ..++.++..|...|.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~-lG---------a~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~-- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAAL-LG---------ASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR-- 106 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHh-cC---------CcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC--
Confidence 33445688999999999997776543 32 479999999999999999999984 457889999888763
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
..||.|+.+|| .|..+|++|. ..|..|++. +.+|
T Consensus 107 ----------------------~~~dtvimNPP---FG~~~rhaDr-----------------~Fl~~Ale~----s~vV 140 (198)
T COG2263 107 ----------------------GKFDTVIMNPP---FGSQRRHADR-----------------PFLLKALEI----SDVV 140 (198)
T ss_pred ----------------------CccceEEECCC---CccccccCCH-----------------HHHHHHHHh----hheE
Confidence 57899999999 5666666553 456667776 4679
Q ss_pred EEeCCCCCcCcHHHHHHHHHHCCCcEEEE
Q 004775 233 YSTCSMNPVENEAVVAEILRKCEGSVELV 261 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~g~~elv 261 (731)
|| ++..-+++-+.......|+.+...
T Consensus 141 Ys---iH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 141 YS---IHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred EE---eeccccHHHHHHHHHhcCCeEEEE
Confidence 96 666678999999999888765444
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.81 E-value=1e-07 Score=105.80 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=94.1
Q ss_pred ccCcEEec--CccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004775 56 EIGNITRQ--EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (731)
Q Consensus 56 ~~G~i~~Q--d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR 133 (731)
..|.|+.. |..+.+....|....+.+|||+|||+|..+..++... |...|+++|+|+..++.+++|++.
T Consensus 204 ~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~---------P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 204 HANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred cCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 44666654 4455554445555556799999999999999888762 467999999999999999999987
Q ss_pred cCCC---ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch
Q 004775 134 MCTA---NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL 210 (731)
Q Consensus 134 lg~~---ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L 210 (731)
++.. ++.+...|+... ....+||.|+|+||.--...+ .
T Consensus 275 n~~~~~~~v~~~~~D~l~~----------------------~~~~~fDlIlsNPPfh~~~~~----------------~- 315 (378)
T PRK15001 275 NMPEALDRCEFMINNALSG----------------------VEPFRFNAVLCNPPFHQQHAL----------------T- 315 (378)
T ss_pred cCcccCceEEEEEcccccc----------------------CCCCCEEEEEECcCcccCccC----------------C-
Confidence 7642 455555544220 112479999999995321111 0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 211 HSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
...-.+++..+.+.|++||++...+-..
T Consensus 316 ~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 316 DNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 1123468999999999999998875443
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.80 E-value=1.8e-08 Score=101.51 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
...+|||+|||+|..+..+|... |.+.|+|+|++..++..+..++++.+..|+.+++.|+..++...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~---------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---- 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN---------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---- 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh----
Confidence 45699999999999999998762 46799999999999999999999888889999999987643210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....||.|+++.| +.|.+-. ..... -++..++..+.++|||||.|.++|
T Consensus 83 --------------~~~~~~d~v~~~~p-----------dpw~k~~-h~~~r--~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 83 --------------FPDGSLSKVFLNFP-----------DPWPKKR-HNKRR--ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred --------------CCCCceeEEEEECC-----------CcCCCCC-ccccc--cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 11247999999876 2232100 00001 124678999999999999998876
No 67
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.78 E-value=8.8e-08 Score=110.23 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~ 156 (731)
++.+|||+|||+|..+..++..+ +...|+|+|+|+..++.++.|+++++.. ++.+.+.|....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~---------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~------- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL---------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN------- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------
Confidence 45799999999999999887764 3579999999999999999999988864 577777765321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....+||.|+++||..........+.-...+.|.. +..-.....+|+..+.++|++||.++
T Consensus 202 ---------------~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~ 266 (506)
T PRK01544 202 ---------------IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKII 266 (506)
T ss_pred ---------------CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence 01247999999999877654311111112222211 11223456789999999999999998
Q ss_pred EEeCCCCCcCcHHHHHHHHHHCC
Q 004775 233 YSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+. +.. -..+-|..++.+.+
T Consensus 267 lE-ig~---~q~~~v~~~~~~~g 285 (506)
T PRK01544 267 LE-IGF---KQEEAVTQIFLDHG 285 (506)
T ss_pred EE-ECC---chHHHHHHHHHhcC
Confidence 75 443 24445666676654
No 68
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.77 E-value=2.1e-08 Score=102.08 Aligned_cols=101 Identities=32% Similarity=0.403 Sum_probs=74.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+++|+.||||+||-|.+++++|..- ....|+|+|+++..++.|++|++.+++.+ +.+.+.|+..++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~---------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG---------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------
T ss_pred CCcceEEEEccCCccHHHHHHhhhc---------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---
Confidence 6789999999999999999998742 14689999999999999999999999865 7789999988642
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...||+|+++.|-+. ...|..|+.++|.||.+-|
T Consensus 167 -------------------~~~~drvim~lp~~~--------------------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 167 -------------------EGKFDRVIMNLPESS--------------------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -------------------TT-EEEEEE--TSSG--------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred -------------------ccccCEEEECChHHH--------------------------HHHHHHHHHHhcCCcEEEC
Confidence 268999999887222 1247778999999999987
No 69
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.75 E-value=3.6e-08 Score=106.95 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=98.5
Q ss_pred cccchhh------hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce
Q 004775 66 VSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL 139 (731)
Q Consensus 66 ~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni 139 (731)
.||-|-+ +..+++|+.|||=+||+||....+. ++ ...|+++|++.+++.-++.|++.++...+
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~----------G~~viG~Did~~mv~gak~Nl~~y~i~~~ 247 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG-LM----------GARVIGSDIDERMVRGAKINLEYYGIEDY 247 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh-hc----------CceEeecchHHHHHhhhhhhhhhhCcCce
Confidence 5555533 4478999999999999999766542 32 47999999999999999999999998777
Q ss_pred EEEec-ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH
Q 004775 140 IVTNH-EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA 218 (731)
Q Consensus 140 ~vt~~-Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL 218 (731)
.+... ||...| +. ...||.|.+|||.--. +...+..+..+..++|
T Consensus 248 ~~~~~~Da~~lp-l~--------------------~~~vdaIatDPPYGrs-------------t~~~~~~l~~Ly~~~l 293 (347)
T COG1041 248 PVLKVLDATNLP-LR--------------------DNSVDAIATDPPYGRS-------------TKIKGEGLDELYEEAL 293 (347)
T ss_pred eEEEecccccCC-CC--------------------CCccceEEecCCCCcc-------------cccccccHHHHHHHHH
Confidence 55555 988866 21 2469999999995322 1222344788999999
Q ss_pred HHHHhhccCCCEEEEEeC
Q 004775 219 MRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 219 ~rAl~lLKpGG~LVYSTC 236 (731)
..+.+.||+||++||.+-
T Consensus 294 e~~~evLk~gG~~vf~~p 311 (347)
T COG1041 294 ESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHhhcCcEEEEecC
Confidence 999999999999999854
No 70
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=7.3e-08 Score=104.88 Aligned_cols=105 Identities=15% Similarity=0.302 Sum_probs=81.4
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.++++++++|||+|||+|..|+.++...+. .|.|+++|+++..++.+++++++++..++.+...|+...+.
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~--------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~- 145 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP- 145 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-
Confidence 356889999999999999999999887542 47899999999999999999999999888888888654321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||+|+++..+ . .+....++.|++||+++
T Consensus 146 --------------------~~~~fD~Ii~~~g~------~----------------------~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 146 --------------------EFAPYDVIFVTVGV------D----------------------EVPETWFTQLKEGGRVI 177 (322)
T ss_pred --------------------ccCCccEEEECCch------H----------------------HhHHHHHHhcCCCCEEE
Confidence 11469999986421 1 11223466899999988
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
..
T Consensus 178 v~ 179 (322)
T PRK13943 178 VP 179 (322)
T ss_pred EE
Confidence 65
No 71
>PRK08317 hypothetical protein; Provisional
Probab=98.72 E-value=1.8e-07 Score=95.03 Aligned_cols=129 Identities=24% Similarity=0.288 Sum_probs=90.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.++..++.+.. ....++.+...|+..++.
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~- 83 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG--------PEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPF- 83 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCC-
Confidence 45778899999999999999999988763 35799999999999988877632 223567777777765431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++... + ..+ .....++.++.++|||||+++
T Consensus 84 --------------------~~~~~D~v~~~~~------~-------~~~---------~~~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRV------L-------QHL---------EDPARALAEIARVLRPGGRVV 121 (241)
T ss_pred --------------------CCCCceEEEEech------h-------hcc---------CCHHHHHHHHHHHhcCCcEEE
Confidence 1257999997421 1 000 113457889999999999999
Q ss_pred EEeCCCC----CcCcHHHHHHHHHH
Q 004775 233 YSTCSMN----PVENEAVVAEILRK 253 (731)
Q Consensus 233 YSTCSl~----p~ENEaVV~~~L~~ 253 (731)
.+.+.+. ...+...+..++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (241)
T PRK08317 122 VLDTDWDTLVWHSGDRALMRKILNF 146 (241)
T ss_pred EEecCCCceeecCCChHHHHHHHHH
Confidence 8876532 22345555555543
No 72
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.71 E-value=9.7e-08 Score=105.85 Aligned_cols=119 Identities=15% Similarity=0.270 Sum_probs=94.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
...+..|||+|||+|..++++|... |...++|+|++..++..+..++.+.+..|+.++++||..+...
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~--- 187 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL--- 187 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh---
Confidence 3457799999999999999999873 4689999999999999999999999999999999999764321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....||+|++--| +-|.+ ..-.++ .+..+|..+.++|++||.+...|
T Consensus 188 ----------------~~~~s~D~I~lnFP-----------dPW~K---krHRRl--v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 188 ----------------LPSNSVEKIFVHFP-----------VPWDK---KPHRRV--ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ----------------CCCCceeEEEEeCC-----------CCccc---cchhhc--cHHHHHHHHHHHcCCCcEEEEEE
Confidence 12367999998655 33422 111122 36788999999999999999999
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
.+.
T Consensus 236 D~~ 238 (390)
T PRK14121 236 DSE 238 (390)
T ss_pred ECH
Confidence 886
No 73
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=103.61 Aligned_cols=131 Identities=22% Similarity=0.218 Sum_probs=96.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+.+|++||||+||-|.+|+.+|..= .-.|+|+|+++..++.|++|++.++..+ +.+.++|+..++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g----------~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG----------RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC----------CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 5679999999999999999998751 2239999999999999999999999877 77899999886421
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...||+|+..-|= .+...+..|+++++.||.|.|-
T Consensus 254 -------------------~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 254 -------------------LGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred -------------------cccCCEEEeCCCC--------------------------cchhhHHHHHHHhhcCcEEEEE
Confidence 1579999986651 2234678899999999999876
Q ss_pred e-CCCCCcC--cHHHHHHHHHHCCCcEEEEec
Q 004775 235 T-CSMNPVE--NEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 T-CSl~p~E--NEaVV~~~L~~~~g~~elvd~ 263 (731)
+ |--+..+ .+..+..+-.+.+-.++....
T Consensus 289 ~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~ 320 (341)
T COG2520 289 EFVPEDDIEERPEKRIKSAARKGGYKVEVLKV 320 (341)
T ss_pred eccchhhcccchHHHHHHHHhhccCcceEEEE
Confidence 4 3332222 334455555554434555554
No 74
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.6e-08 Score=109.52 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=76.7
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+++..++++|||+.||-|.+|+.||.. ...|+|+|+++..++.+.+|++.++..|+.+...++..+..
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~-----------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKR-----------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhccc-----------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 4567789999999999999999999854 46899999999999999999999999999999999888643
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG 190 (731)
.. .....||.||+|||-+|.+
T Consensus 356 ~~------------------~~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 356 AW------------------WEGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred hc------------------cccCCCCEEEECCCCCCCC
Confidence 11 1235799999999988876
No 75
>PLN02244 tocopherol O-methyltransferase
Probab=98.71 E-value=1.5e-07 Score=103.14 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=83.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~ 155 (731)
+++.+|||+|||+|..+..|++.. ...|+|+|+++..+..++++++..+. .++.+...|+..+|-
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~----------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~---- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY----------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF---- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC----
Confidence 688999999999999999998764 25899999999999999998887776 468888888876541
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|++- +.+.+.++ ..+++..+.++|||||+++.++
T Consensus 183 -----------------~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 -----------------EDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred -----------------CCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 13679999972 11111111 2467888999999999999887
Q ss_pred CC
Q 004775 236 CS 237 (731)
Q Consensus 236 CS 237 (731)
+.
T Consensus 224 ~~ 225 (340)
T PLN02244 224 WC 225 (340)
T ss_pred ec
Confidence 54
No 76
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.70 E-value=2.4e-07 Score=100.92 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~ 153 (731)
.+.+|.+|||+|||.|..+..|+.. .+.|+|+|.+++.++.++.++...+. .++.+.+.++..++.
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~-----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-- 194 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM-----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-- 194 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--
Confidence 3457889999999999988877652 36899999999999999877654433 467788887766431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||+|+| .+++.+-++ ...+|....++|||||+++.
T Consensus 195 -------------------~~~~FD~Vi~------~~vLeHv~d----------------~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 195 -------------------EGRKFDAVLS------LEVIEHVAN----------------PAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred -------------------ccCCCCEEEE------hhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEE
Confidence 1267999997 112211111 13578888899999999999
Q ss_pred EeCCCC------------------C--------cCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCccccee
Q 004775 234 STCSMN------------------P--------VENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKV 281 (731)
Q Consensus 234 STCSl~------------------p--------~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~W~v 281 (731)
+|-.-. | .=+..-+..+|++.| ++++++ .++...|....|..
T Consensus 234 st~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG--f~i~~~----~G~~~~p~~~~w~~ 301 (322)
T PLN02396 234 STINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS--VDVKEM----AGFVYNPITGRWLL 301 (322)
T ss_pred EECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC--CeEEEE----eeeEEcCcCCeEEe
Confidence 862211 1 123455666666654 555555 34445566566764
No 77
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.68 E-value=9.5e-08 Score=106.00 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+..++.+|||++||.|..++.++.. ...|+|+|+++..++.+++|++.++..++.+.+.|+..+...
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~-----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-- 296 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP-----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-- 296 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--
Confidence 3346789999999999999988742 358999999999999999999999988899999888664210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCC
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCS 187 (731)
....||.|++|||-.
T Consensus 297 ------------------~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 297 ------------------QMSAPELVLVNPPRR 311 (374)
T ss_pred ------------------cCCCCCEEEECCCCC
Confidence 013599999999954
No 78
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.67 E-value=1.7e-07 Score=98.23 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~ 155 (731)
.++.+|||+|||+|..+..+++. ...|+++|+++..+..++++++..+. .++.+++.|+..++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-----------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~---- 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-----------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ---- 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh----
Confidence 45679999999999999998774 35899999999999999999988876 468888888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....||.|+|... +. |- .....+|..+.++|||||+|+...
T Consensus 108 ----------------~~~~~fD~V~~~~v------l~--------~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 108 ----------------HLETPVDLILFHAV------LE--------WV--------ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ----------------hcCCCCCEEEehhH------HH--------hh--------CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 11257999997322 10 10 012357889999999999997654
Q ss_pred CC
Q 004775 236 CS 237 (731)
Q Consensus 236 CS 237 (731)
.+
T Consensus 150 ~n 151 (255)
T PRK11036 150 YN 151 (255)
T ss_pred EC
Confidence 33
No 79
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.67 E-value=3e-07 Score=96.38 Aligned_cols=119 Identities=23% Similarity=0.263 Sum_probs=83.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..++. ++ .+.|+|+|+|+.++..+++|+++.+.. .+.+...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~-~g---------~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---------- 176 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAK-LG---------AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---------- 176 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHH-cC---------CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC----------
Confidence 46899999999999987765543 22 346999999999999999999887762 2211100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...||.|+++.. ......++..+.++|||||+++.|
T Consensus 177 -------------------~~~fD~Vvani~-------------------------~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 177 -------------------DLKADVIVANIL-------------------------ANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -------------------CCCcCEEEEcCc-------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 126999998531 112346788899999999999998
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
.... +..+-+...++++| ++++..
T Consensus 213 gi~~---~~~~~v~~~l~~~G--f~~~~~ 236 (250)
T PRK00517 213 GILE---EQADEVLEAYEEAG--FTLDEV 236 (250)
T ss_pred ECcH---hhHHHHHHHHHHCC--CEEEEE
Confidence 6543 44555667777765 455443
No 80
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.67 E-value=1.8e-07 Score=97.84 Aligned_cols=110 Identities=22% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..+++.+.. |.+.|+|+|.|+.+++.++.++.+.+.. ++.+...|+..+|.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---
Confidence 457899999999999999888876532 4689999999999999999999887764 67888887765431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L-~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
..||.|++.- ++. .+ ...+.+++.+..+.|||||.++.
T Consensus 124 --------------------~~~D~vv~~~------~l~---------------~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 124 --------------------ENASMVVLNF------TLQ---------------FLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred --------------------CCCCEEehhh------HHH---------------hCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3478887521 110 01 12246789999999999999999
Q ss_pred EeC
Q 004775 234 STC 236 (731)
Q Consensus 234 STC 236 (731)
+..
T Consensus 163 ~e~ 165 (247)
T PRK15451 163 SEK 165 (247)
T ss_pred EEe
Confidence 863
No 81
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.66 E-value=1.6e-07 Score=95.61 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|+.++.++.. ..+.|+++|+++..++.+++|++.++..++.+.+.|+..+..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr----------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----- 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR----------YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----- 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-----
Confidence 46789999999999988865432 136899999999999999999999998888888888755310
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
.....||.|++|||.
T Consensus 117 ---------------~~~~~fDlV~~DPPy 131 (199)
T PRK10909 117 ---------------QPGTPHNVVFVDPPF 131 (199)
T ss_pred ---------------hcCCCceEEEECCCC
Confidence 011469999999993
No 82
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.65 E-value=2.8e-07 Score=93.24 Aligned_cols=109 Identities=17% Similarity=0.052 Sum_probs=79.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+.+.++.+|||+|||+|..+..|++. ...|+|+|+|+..++.++.+++..+..++.+...|...++
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~-----------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-- 91 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAAN-----------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-- 91 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--
Confidence 345567789999999999999998864 2489999999999999999888877777777777655432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. ...||.|+|-. ++. |. -......++....++|||||+++
T Consensus 92 -------------------~-~~~fD~I~~~~------~~~--------~~------~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 92 -------------------F-DGEYDFILSTV------VLM--------FL------EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred -------------------c-CCCcCEEEEec------chh--------hC------CHHHHHHHHHHHHHHcCCCcEEE
Confidence 1 14699999621 110 00 01234578999999999999976
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
+.
T Consensus 132 ~~ 133 (197)
T PRK11207 132 IV 133 (197)
T ss_pred EE
Confidence 54
No 83
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.65 E-value=2.9e-07 Score=95.70 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=99.5
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHF 149 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~---~ni~vt~~Da~~f 149 (731)
.|++..|++|||||+|+|-.|+-|+..+.+.. + ...+.|+..|+++..+....++.++.+. .++.++..||..+
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~--~-~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQF--G-DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhcccc--C-CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 46788899999999999999999998876421 1 1247999999999999999999877654 3488999999987
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
| + +...||+... +-| +|--+++ .+.|+.|.+.|||||
T Consensus 172 p-F--------------------dd~s~D~yTi-----afG-IRN~th~----------------~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 172 P-F--------------------DDDSFDAYTI-----AFG-IRNVTHI----------------QKALREAYRVLKPGG 208 (296)
T ss_pred C-C--------------------CCCcceeEEE-----ecc-eecCCCH----------------HHHHHHHHHhcCCCc
Confidence 6 1 2357888764 222 2221221 357999999999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
++. |=..+.+|.+.+..+-..+-
T Consensus 209 rf~---cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 209 RFS---CLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred EEE---EEEccccccHHHHHHHHhhh
Confidence 875 77666666566688877653
No 84
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.64 E-value=6.3e-08 Score=97.32 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~ 156 (731)
+|.+|||+|||+|+..+.++.. +...|+.+|.|++.+..+++|++.++..+ +.+...|+..+-..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR----------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~---- 107 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR----------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLK---- 107 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHH----
T ss_pred CCCeEEEcCCccCccHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHh----
Confidence 5889999999999988765443 35699999999999999999999999875 88888887653110
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
......+||.|++|||.
T Consensus 108 -------------~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 108 -------------LAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp -------------HHHCTS-EEEEEE--ST
T ss_pred -------------hcccCCCceEEEECCCc
Confidence 01123789999999994
No 85
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=2.7e-07 Score=96.06 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=90.8
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccc
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQ 147 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~ 147 (731)
+..+++...+..+|||+|+|.|.-++.++..+.. .|.|+++|++++++..+++++++.|.. ++.+..+|+.
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~--------~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPE--------DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 4445567778899999999999999999887643 689999999999999999999999975 6888888886
Q ss_pred cC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 148 HF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 148 ~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
.. +.+. .......||.|++|++= .....++..++++|+
T Consensus 131 ~~L~~l~----------------~~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 131 SALDQLL----------------NNDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLVK 169 (234)
T ss_pred HHHHHHH----------------hCCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcC
Confidence 53 1110 00112579999999750 112356788899999
Q ss_pred CCCEEEEEeC
Q 004775 227 VGGRIVYSTC 236 (731)
Q Consensus 227 pGG~LVYSTC 236 (731)
|||.|+.-.+
T Consensus 170 ~GG~ii~dn~ 179 (234)
T PLN02781 170 VGGIIAFDNT 179 (234)
T ss_pred CCeEEEEEcC
Confidence 9999997544
No 86
>PLN02476 O-methyltransferase
Probab=98.63 E-value=1.7e-07 Score=99.81 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=106.0
Q ss_pred cchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEe
Q 004775 39 RKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (731)
Q Consensus 39 rk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (731)
+..+.+..+.++-... ....+........+...++......+||++|++.|.-|+.+|..+.. .|.|+++|
T Consensus 80 ~~~~~L~~l~e~a~~~-~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~--------~G~V~TiE 150 (278)
T PLN02476 80 REPKILRQLREETSKM-RGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPE--------SGCLVACE 150 (278)
T ss_pred CCCHHHHHHHHHHHhc-cCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCC--------CCEEEEEE
Confidence 3445566665553311 11233334445555666677778899999999999999999988753 68999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-ceEEEecccccCC-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccCh
Q 004775 119 LDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 196 (731)
Q Consensus 119 id~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~p 196 (731)
.++.++..+++++++.|.. ++.+..+||.... .+. .......||.|++|++
T Consensus 151 ~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~----------------~~~~~~~FD~VFIDa~----------- 203 (278)
T PLN02476 151 RDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI----------------QNGEGSSYDFAFVDAD----------- 203 (278)
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH----------------hcccCCCCCEEEECCC-----------
Confidence 9999999999999999985 7889999887631 110 0011257999999986
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 197 DIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 197 d~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
+ ......+..++++|++||.||.=-+
T Consensus 204 ----K----------~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 204 ----K----------RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred ----H----------HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 0 2234567888999999999997533
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.62 E-value=4.8e-07 Score=96.95 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=85.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..++.. + .+.|+|+|+|+.++..+++|+.+++... +.+...+...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g---------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~------ 220 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G---------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ------ 220 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc------
Confidence 457899999999999988776542 2 4689999999999999999999887653 3333332111
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....+||+|+++.. .....+++..+.++|||||+++.|
T Consensus 221 -----------------~~~~~fDlVvan~~-------------------------~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 221 -----------------PIEGKADVIVANIL-------------------------AEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -----------------ccCCCceEEEEecC-------------------------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11257999998642 011246788899999999999998
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
...- +...-|.+++++. |+++.+
T Consensus 259 gi~~---~~~~~v~~~~~~~---f~~~~~ 281 (288)
T TIGR00406 259 GILE---TQAQSVCDAYEQG---FTVVEI 281 (288)
T ss_pred eCcH---hHHHHHHHHHHcc---CceeeE
Confidence 6432 4444555666542 555543
No 88
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.62 E-value=1.5e-07 Score=103.78 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
++++.++ .|||++||.|..|+.||.. ...|+|+|+++..+..+++|++.++..|+.+...++..+...
T Consensus 192 ~l~~~~~-~vlDlycG~G~fsl~la~~-----------~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 192 WLDLSKG-DVLDLYCGVGTFSLPLAKK-----------AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HCTT-TT-EEEEES-TTTCCHHHHHCC-----------SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred HhhcCCC-cEEEEeecCCHHHHHHHhh-----------CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence 4566666 8999999999999999765 468999999999999999999999999999998887665321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG 190 (731)
......- ............+|.||+|||-+|.+
T Consensus 260 ~~~~r~~-----~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 260 LAKAREF-----NRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp HCCS-GG-----TTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhHHH-----HhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 0000000 00000011224689999999988866
No 89
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=3.3e-07 Score=96.01 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=102.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~ 156 (731)
.+..+||+|||+|..++.++..| |.+.|+|+|++...+.++.+|++|++.. .+.+.+++.+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L---------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~-------- 210 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGL---------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES-------- 210 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcC---------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc--------
Confidence 35679999999999998887665 4689999999999999999999999875 46777664332
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-Chhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
+...+.....+++|.++++||.-.+--++. .|++ +.+.+.. +..-...-..+..-|.++|++||.+
T Consensus 211 --------d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV-~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 211 --------DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV-RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred --------ccccccccccCceeEEecCCCcccccchhhcCchh-eecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 011122233478999999999866554432 3333 2233322 2223345567788899999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHH
Q 004775 232 VYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~ 252 (731)
.+.+--. .+....|+..+.
T Consensus 282 ~le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 282 QLELVER--KEHSYLVRIWMI 300 (328)
T ss_pred EEEeccc--ccCcHHHHHHHH
Confidence 9986533 344456666664
No 90
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.59 E-value=4.1e-07 Score=94.79 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=78.3
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt 142 (731)
|..........+...++.+|||+|||+|..|..++.. ...|+++|+++.+++.++.+.. ...+.
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~l~~a~~~~~-----~~~~~ 90 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-----------GSQVTALDLSPPMLAQARQKDA-----ADHYL 90 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCC-----CCCEE
Confidence 4443333334445556789999999999988877542 3689999999999887766432 23445
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004775 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (731)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (731)
+.|+..+|. ....||.|++..+ + .|.. ....+|.++.
T Consensus 91 ~~d~~~~~~---------------------~~~~fD~V~s~~~------l--------~~~~--------d~~~~l~~~~ 127 (251)
T PRK10258 91 AGDIESLPL---------------------ATATFDLAWSNLA------V--------QWCG--------NLSTALRELY 127 (251)
T ss_pred EcCcccCcC---------------------CCCcEEEEEECch------h--------hhcC--------CHHHHHHHHH
Confidence 666655431 1257999997432 1 1221 1246789999
Q ss_pred hhccCCCEEEEEeCC
Q 004775 223 SLLKVGGRIVYSTCS 237 (731)
Q Consensus 223 ~lLKpGG~LVYSTCS 237 (731)
++|||||.++++|-.
T Consensus 128 ~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 128 RVVRPGGVVAFTTLV 142 (251)
T ss_pred HHcCCCeEEEEEeCC
Confidence 999999999998643
No 91
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.58 E-value=2.7e-07 Score=96.51 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=77.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+.+.++.+|||+|||+|..|..+++.. +.+.|+++|+++..+..++.+. +++.+...|+..++
T Consensus 26 ~~~~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~-- 89 (258)
T PRK01683 26 RVPLENPRYVVDLGCGPGNSTELLVERW---------PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ-- 89 (258)
T ss_pred hCCCcCCCEEEEEcccCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC--
Confidence 4456789999999999999999998764 3579999999999888776542 45666777765432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...+||+|++... + .|-+ .+.+++.++.++|||||+++
T Consensus 90 --------------------~~~~fD~v~~~~~------l--------~~~~--------d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 90 --------------------PPQALDLIFANAS------L--------QWLP--------DHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred --------------------CCCCccEEEEccC------h--------hhCC--------CHHHHHHHHHHhcCCCcEEE
Confidence 1147999998542 1 1211 13568999999999999998
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
.++
T Consensus 128 ~~~ 130 (258)
T PRK01683 128 VQM 130 (258)
T ss_pred EEC
Confidence 863
No 92
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.58 E-value=1.1e-06 Score=95.79 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=75.4
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~fp~~ 152 (731)
+++.+|.+|||+|||+|..+..++.. + ...|+++|.++..+.......+..+ ..++.+...++..+|.
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~-g---------~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGA-G---------AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHc-C---------CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 44557899999999999999988775 1 3579999999876654333223333 2467777777666541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|+| .|++.+..+ ...+|+.+.+.|+|||++|
T Consensus 187 ---------------------~~~FD~V~s------~~vl~H~~d----------------p~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 187 ---------------------LKAFDTVFS------MGVLYHRRS----------------PLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred ---------------------cCCcCEEEE------CChhhccCC----------------HHHHHHHHHHhcCCCcEEE
Confidence 257999996 233322111 1357889999999999999
Q ss_pred EEeC
Q 004775 233 YSTC 236 (731)
Q Consensus 233 YSTC 236 (731)
.+|-
T Consensus 224 l~~~ 227 (322)
T PRK15068 224 LETL 227 (322)
T ss_pred EEEE
Confidence 8864
No 93
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=6.8e-07 Score=93.60 Aligned_cols=149 Identities=23% Similarity=0.380 Sum_probs=106.7
Q ss_pred cccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
+.+.-+|.-|.+ +....|++.||.+||..+.|+||.+..++..+. |+|+|+..|.+..|.+.+.+..++.
T Consensus 84 hRTQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~--------ptGhl~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 84 HRTQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVA--------PTGHLYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred CcceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhC--------cCcceEEEEecHHHHHHHHHHHHHh
Confidence 334444444433 334678999999999999999999999999885 6999999999999999999999999
Q ss_pred CCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004775 135 CTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (731)
Q Consensus 135 g~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (731)
+.+ |+.++.-|...-- .......+|.|++|.| +| |
T Consensus 154 gi~~~vt~~hrDVc~~G-------------------F~~ks~~aDaVFLDlP---------aP-----w----------- 189 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSG-------------------FLIKSLKADAVFLDLP---------AP-----W----------- 189 (314)
T ss_pred CCCcceEEEEeecccCC-------------------ccccccccceEEEcCC---------Ch-----h-----------
Confidence 874 6778777765410 0111378999999998 22 2
Q ss_pred HHHHHHHHHhhccCCC-EEEEEeCCCCC-cCcHHHHHHHHHHCCC-cEEEEec
Q 004775 214 QVQIAMRGISLLKVGG-RIVYSTCSMNP-VENEAVVAEILRKCEG-SVELVDV 263 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG-~LVYSTCSl~p-~ENEaVV~~~L~~~~g-~~elvd~ 263 (731)
..+-+|..+||.+| ++ ||++| +|.-+--.++|+.++. +++.+++
T Consensus 190 --~AiPha~~~lk~~g~r~----csFSPCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 190 --EAIPHAAKILKDEGGRL----CSFSPCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred --hhhhhhHHHhhhcCceE----EeccHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 13556677888776 44 67766 4555556667777763 3444444
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=7.7e-07 Score=95.44 Aligned_cols=127 Identities=23% Similarity=0.255 Sum_probs=91.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+++|.+|||++||+|-.+..++.+ +...|+|+|+|+..+...++|++++++.... -+..|...
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL----------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~----~~~~~~~~--- 222 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL----------GAKKVVGVDIDPQAVEAARENARLNGVELLV----QAKGFLLL--- 222 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc----------CCceEEEecCCHHHHHHHHHHHHHcCCchhh----hcccccch---
Confidence 468999999999999977766543 3579999999999999999999999886511 11111110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.......||+|+++ -|+..-.+++..+.++|||||+++.|=
T Consensus 223 --------------~~~~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 223 --------------EVPENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --------------hhcccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 01122589999972 255566688889999999999999995
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+.-.. +..|.+++.+.+ |+++++
T Consensus 264 --Il~~q-~~~V~~a~~~~g--f~v~~~ 286 (300)
T COG2264 264 --ILEDQ-AESVAEAYEQAG--FEVVEV 286 (300)
T ss_pred --ehHhH-HHHHHHHHHhCC--CeEeEE
Confidence 44444 666777776554 666665
No 95
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.56 E-value=1.8e-07 Score=81.01 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred EeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCC
Q 004775 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (731)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~ 162 (731)
||++||+|..+..+++. + ...|+++|+++..++.++++.+.. ++.+...|+..+|-
T Consensus 1 LdiG~G~G~~~~~l~~~-~---------~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~----------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G---------GASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPF----------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T---------TCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-----------
T ss_pred CEecCcCCHHHHHHHhc-c---------CCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcc-----------
Confidence 89999999999999876 2 479999999999988887765433 34477888777642
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 163 ~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++-- .|..+ ..+.++++.+.++|||||+++.
T Consensus 57 ----------~~~sfD~v~~~~-------------~~~~~---------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ----------PDNSFDVVFSNS-------------VLHHL---------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----------TT-EEEEEEES-------------HGGGS---------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------cccccccccccc-------------ceeec---------cCHHHHHHHHHHHcCcCeEEeC
Confidence 237899999711 11111 4567899999999999999974
No 96
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.9e-07 Score=93.73 Aligned_cols=133 Identities=20% Similarity=0.199 Sum_probs=88.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+++|++|+|+|||||||+..++..+.. +|.|+|+|+.+-.. .+++.++..|...-+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~--------~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~- 102 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGA--------GGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEK- 102 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCC--------CCcEEEEECccccc-----------CCCceEEeeeccCccHHHH-
Confidence 367999999999999999999998864 57899999966432 3567778777765221100
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
-........+|+|++|+----.|+ |+... .....+-...+.-|...|++||.+|.
T Consensus 103 ------------l~~~l~~~~~DvV~sD~ap~~~g~----------~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~-- 157 (205)
T COG0293 103 ------------LLEALGGAPVDVVLSDMAPNTSGN----------RSVDH-ARSMYLCELALEFALEVLKPGGSFVA-- 157 (205)
T ss_pred ------------HHHHcCCCCcceEEecCCCCcCCC----------ccccH-HHHHHHHHHHHHHHHHeeCCCCeEEE--
Confidence 001112244799999986455554 22111 22233445567778889999999884
Q ss_pred CCCCCcCcHHHHHHHHHHC
Q 004775 236 CSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~ 254 (731)
....-+++..+-..++++
T Consensus 158 -K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 158 -KVFQGEDFEDLLKALRRL 175 (205)
T ss_pred -EEEeCCCHHHHHHHHHHh
Confidence 445667777777777764
No 97
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.55 E-value=1e-06 Score=95.61 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=74.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~fp~~ 152 (731)
+++.+|.+|||+|||+|..+..++.. ....|+|+|.+...+..+....+..+ ..++.+...+...+|.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~----------g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~- 185 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGH----------GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE- 185 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHc----------CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-
Confidence 35678999999999999988777653 13589999999987655432222222 2345555555544331
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|+| .|++-+.++ -...|..+.+.|||||+||
T Consensus 186 ---------------------~~~FD~V~s------~gvL~H~~d----------------p~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 186 ---------------------LYAFDTVFS------MGVLYHRKS----------------PLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred ---------------------CCCcCEEEE------cchhhccCC----------------HHHHHHHHHHhcCCCCEEE
Confidence 147999996 344322111 1346888999999999999
Q ss_pred EEeCCCC
Q 004775 233 YSTCSMN 239 (731)
Q Consensus 233 YSTCSl~ 239 (731)
.+|..+.
T Consensus 223 letl~i~ 229 (314)
T TIGR00452 223 LETLVID 229 (314)
T ss_pred EEEEEec
Confidence 9886554
No 98
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=8.6e-07 Score=94.76 Aligned_cols=154 Identities=19% Similarity=0.170 Sum_probs=112.2
Q ss_pred ccccCcEEec--CccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 54 ENEIGNITRQ--EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 54 ~~~~G~i~~Q--d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
-+..|-|+.. |..|.+...-|...++.+|||+|||-|-..+.++.. .|...|+-+|+|...++..+.|+
T Consensus 132 ~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~---------~p~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 132 KTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK---------SPQAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred EeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh---------CCCCeEEEEecCHHHHHHHHHhH
Confidence 4566777775 668888888888888889999999999999999886 25689999999999999999999
Q ss_pred HHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004775 132 KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (731)
Q Consensus 132 kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (731)
+.++..+..+...|... . -..+||.|+|+||-- .| ..-.+
T Consensus 203 ~~N~~~~~~v~~s~~~~--~---------------------v~~kfd~IisNPPfh-~G----------------~~v~~ 242 (300)
T COG2813 203 AANGVENTEVWASNLYE--P---------------------VEGKFDLIISNPPFH-AG----------------KAVVH 242 (300)
T ss_pred HHcCCCccEEEEecccc--c---------------------ccccccEEEeCCCcc-CC----------------cchhH
Confidence 99988875333332211 1 114899999999922 11 12344
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
.+-.+|+..|.+.|++||.|-...-..-|. ...|++.-+.++.+.
T Consensus 243 ~~~~~~i~~A~~~L~~gGeL~iVan~~l~y------~~~L~~~Fg~v~~la 287 (300)
T COG2813 243 SLAQEIIAAAARHLKPGGELWIVANRHLPY------EKKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEcCCCCh------HHHHHHhcCCEEEEE
Confidence 556689999999999999887766555443 234444434555544
No 99
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.54 E-value=2.1e-07 Score=103.14 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=80.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
+-+|||++||+|.-++.++....+ ...|++||+++..++.+++|++.++..++.+++.|+..+..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g--------a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~------- 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG--------VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR------- 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC--------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------
Confidence 358999999999999988765321 36899999999999999999999988889999999876421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
....+||+|.+||+ |.. ...|..|++.++.||.| |.|||
T Consensus 110 -------------~~~~~fDvIdlDPf--Gs~------------------------~~fld~al~~~~~~glL-~vTaT 148 (374)
T TIGR00308 110 -------------YRNRKFHVIDIDPF--GTP------------------------APFVDSAIQASAERGLL-LVTAT 148 (374)
T ss_pred -------------HhCCCCCEEEeCCC--CCc------------------------HHHHHHHHHhcccCCEE-EEEec
Confidence 01246999999997 211 13678889999987765 55565
No 100
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.53 E-value=9.5e-07 Score=91.60 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~ 155 (731)
.++.+|||++||+|..+..+++.+.. |.+.|+++|+++..+..++++++..+. .++.++..|+..++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----
Confidence 57889999999999999999887532 357999999999999999998887654 467888887766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEEE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~-~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
..+|.|++.-. +. .++ .....++.++.+.|||||+++.+
T Consensus 121 -------------------~~~d~v~~~~~------l~---------------~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 -------------------KNASMVILNFT------LQ---------------FLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -------------------CCCCEEeeecc------hh---------------hCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 34788775211 10 011 12357899999999999999987
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
.
T Consensus 161 d 161 (239)
T TIGR00740 161 E 161 (239)
T ss_pred e
Confidence 4
No 101
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.53 E-value=4.9e-07 Score=96.38 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=79.8
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH 148 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~ 148 (731)
....|+++||++|||++||-|+.+..+|+..+ ..|+++.+|..-...+++++++.|+. .+.+...|...
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG----------CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34567899999999999999999999998752 58999999999999999999999986 47777777554
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
++ .+||+|++ -|++-+-. +..-...+.++.++||||
T Consensus 124 ~~------------------------~~fD~IvS------i~~~Ehvg--------------~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 LP------------------------GKFDRIVS------IEMFEHVG--------------RKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ---------------------------S-SEEEE------ESEGGGTC--------------GGGHHHHHHHHHHHSETT
T ss_pred cC------------------------CCCCEEEE------EechhhcC--------------hhHHHHHHHHHHHhcCCC
Confidence 32 38999985 23221110 111245688899999999
Q ss_pred CEEEEEeCCC
Q 004775 229 GRIVYSTCSM 238 (731)
Q Consensus 229 G~LVYSTCSl 238 (731)
|+++.-+++.
T Consensus 160 G~~~lq~i~~ 169 (273)
T PF02353_consen 160 GRLVLQTITH 169 (273)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEeccc
Confidence 9998766554
No 102
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.52 E-value=6.5e-07 Score=94.71 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=79.5
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+.+.|+.+|||+|||.|..+..++... .+.|+++|+++..+..++.+... ..++.+...|+...|
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~----------~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~-- 112 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY----------GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD-- 112 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc----------CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--
Confidence 3578899999999999999988887542 35899999999999988876543 246777777765432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~-D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||.|++ ++- ..+. .....++|+++.++|||||++
T Consensus 113 -------------------~~~~~FD~V~s~~~l--------------~h~~-------~~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 113 -------------------FPENTFDMIYSRDAI--------------LHLS-------YADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred -------------------CCCCCeEEEEEhhhH--------------HhCC-------HHHHHHHHHHHHHHcCCCcEE
Confidence 11267999996 110 0000 013467899999999999999
Q ss_pred EEEeC
Q 004775 232 VYSTC 236 (731)
Q Consensus 232 VYSTC 236 (731)
+.+.-
T Consensus 153 vi~d~ 157 (263)
T PTZ00098 153 LITDY 157 (263)
T ss_pred EEEEe
Confidence 98743
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.52 E-value=9.3e-07 Score=75.79 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=77.7
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+|||+|||+|..+.+++. . +...++++|.++..+..+.+........++.+...|...+..
T Consensus 1 ~ildig~G~G~~~~~~~~--~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS--G--------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc--C--------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---------
Confidence 489999999999888876 1 247999999999999888764444455667777776655321
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|+++.+|... ...+..++..+.++|++||.++++
T Consensus 62 -----------~~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 -----------EADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----------ccCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 112579999999886542 345567889999999999999886
No 104
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.52 E-value=4.1e-07 Score=95.31 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=74.7
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.++.+|||++||+|..+..|+... |.+.|+++|+++..++.++.+ ++.+...|+..++.
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~---------p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-- 86 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRW---------PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-- 86 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC--
Confidence 456788999999999999999888763 357899999999988876542 35666777655321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...||.|++... + .|-+ .+.+++.++.+.|||||+++.
T Consensus 87 --------------------~~~fD~v~~~~~------l--------~~~~--------d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 87 --------------------KPDTDVVVSNAA------L--------QWVP--------EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred --------------------CCCceEEEEehh------h--------hhCC--------CHHHHHHHHHHhCCCCcEEEE
Confidence 257999998442 1 1111 135688999999999999997
Q ss_pred E
Q 004775 234 S 234 (731)
Q Consensus 234 S 234 (731)
+
T Consensus 125 ~ 125 (255)
T PRK14103 125 Q 125 (255)
T ss_pred E
Confidence 6
No 105
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.52 E-value=6e-07 Score=96.60 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..+|.+|||++||+|-.+..++. ++ .+.|+|+|+|+..+..+++|++.+++..-..+ ......
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~k-lG---------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~~~~~~------ 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAK-LG---------AKKVVAIDIDPLAVEAARENAELNGVEDRIEV-SLSEDL------ 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHH-TT---------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-SCTSCT------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHH-cC---------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-EEeccc------
Confidence 46789999999999997665544 33 57899999999999999999999998652222 211111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...+||.|+++- +...-..++....++|++||+++.|
T Consensus 222 -----------------~~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~l~~~G~lIlS- 258 (295)
T PF06325_consen 222 -----------------VEGKFDLVVANI-------------------------LADVLLELAPDIASLLKPGGYLILS- 258 (295)
T ss_dssp -----------------CCS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEE-
T ss_pred -----------------ccccCCEEEECC-------------------------CHHHHHHHHHHHHHhhCCCCEEEEc-
Confidence 127899999732 3344566777888899999999987
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
-+...+.+.|+ +++++ + +++++.
T Consensus 259 -GIl~~~~~~v~-~a~~~-g--~~~~~~ 281 (295)
T PF06325_consen 259 -GILEEQEDEVI-EAYKQ-G--FELVEE 281 (295)
T ss_dssp -EEEGGGHHHHH-HHHHT-T--EEEEEE
T ss_pred -cccHHHHHHHH-HHHHC-C--CEEEEE
Confidence 45455555554 55564 3 666655
No 106
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.52 E-value=3.2e-07 Score=102.11 Aligned_cols=101 Identities=23% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||++||+|..++.++...+ ...|+|||+++..++.+++|++.++..++.+.+.|+..+..
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~---------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~------ 121 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG---------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH------ 121 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh------
Confidence 357999999999999999876532 24899999999999999999999999888888888865321
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
. ...||+|++||| |.+ ...|..|++.+++||.|.+|
T Consensus 122 --------------~-~~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 --------------E-ERKFDVVDIDPF--GSP------------------------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------------h-cCCCCEEEECCC--CCc------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 0 246999999998 332 13577788889996655444
No 107
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.52 E-value=3.7e-07 Score=100.90 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+.+|||+|||+|..|+.++.. ...|+|+|+++..++.+++|++.++..|+.+.+.|+..+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-----------~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-----------FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 357999999999999977764 358999999999999999999999998999999998764
No 108
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.52 E-value=2.3e-07 Score=96.03 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
-+|.+|||++||-|..+.-||.+ ...|+|+|++++-++.++..+...++. +......+..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-----------Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~ed-------- 117 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-----------GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVED-------- 117 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-----------CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHH--------
Confidence 37999999999999988888775 468999999999999999888776653 1111111111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
......+||+|+| .-++-+-|+. ..+++.+.+++||||.++.||-
T Consensus 118 -------------l~~~~~~FDvV~c------mEVlEHv~dp----------------~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 118 -------------LASAGGQFDVVTC------MEVLEHVPDP----------------ESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -------------HHhcCCCccEEEE------hhHHHccCCH----------------HHHHHHHHHHcCCCcEEEEecc
Confidence 1112268999998 2223222221 3489999999999999999965
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 163 n 163 (243)
T COG2227 163 N 163 (243)
T ss_pred c
Confidence 4
No 109
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.51 E-value=2e-07 Score=92.50 Aligned_cols=120 Identities=28% Similarity=0.274 Sum_probs=68.7
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
++..+.+|||+||||||+|..+++..+ +.+.|+|+|+.+.. ..+++....+|........
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~--------~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~- 79 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGG--------PAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIK- 79 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTT--------TEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSH-
T ss_pred CcccccEEEEcCCcccceeeeeeeccc--------ccceEEEEeccccc-----------cccceeeeecccchhhHHH-
Confidence 444569999999999999999987652 36999999997651 1133444444433211100
Q ss_pred CCCCCCCCccccccccccccccccEEEecC--CCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~--PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. ...........||.|+||+ +|+|+... + ......+....|.-|+++|++||.+|
T Consensus 80 -~---------i~~~~~~~~~~~dlv~~D~~~~~~g~~~~----d---------~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 80 -D---------IRKLLPESGEKFDLVLSDMAPNVSGDRNI----D---------EFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp -H---------GGGSHGTTTCSESEEEE-------SSHHS----S---------HHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred -h---------hhhhccccccCcceeccccccCCCCchhh----H---------HHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 0 0000001125899999998 55554211 1 12234566677778889999999888
Q ss_pred EEeCC
Q 004775 233 YSTCS 237 (731)
Q Consensus 233 YSTCS 237 (731)
--+-.
T Consensus 137 ~K~~~ 141 (181)
T PF01728_consen 137 IKVFK 141 (181)
T ss_dssp EEESS
T ss_pred EEecc
Confidence 66544
No 110
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.51 E-value=3.1e-07 Score=82.44 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=71.8
Q ss_pred EEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCC
Q 004775 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSA 161 (731)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~ 161 (731)
|||+|||+|..+..++..+.. .+...++++|+|+..+..++++.+..+. ++.+...|+..++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~------~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~---------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA------GPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF---------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH----------
T ss_pred CEEeecCCcHHHHHHHHHhhh------cccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc----------
Confidence 799999999999999988621 1347999999999999999999887665 77888888876431
Q ss_pred CccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
...+||.|+| ++.. +. .--...+.+++++..++|||||
T Consensus 64 -----------~~~~~D~v~~----~~~~-~~--------------~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 -----------SDGKFDLVVC----SGLS-LH--------------HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -----------HSSSEEEEEE-----TTG-GG--------------GSSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------cCCCeeEEEE----cCCc-cC--------------CCCHHHHHHHHHHHHHHhCCCC
Confidence 2368999997 2211 10 0011345789999999999998
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.50 E-value=1.5e-06 Score=98.97 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=87.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.++.+|||+|||+|..+..++... ...|+|+|+|+..+..+++++...+ .++.+...|+...+
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--- 327 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF----------DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--- 327 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC---
Confidence 456789999999999999988887753 2589999999999998887765332 35677777765432
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.....||.|++. +++.+.++ ..+++..+.++|||||+|+.
T Consensus 328 ------------------~~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 328 ------------------YPDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred ------------------CCCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEE
Confidence 112579999972 22221111 24688999999999999998
Q ss_pred EeCCCCCcCcHHHHHHHHHHCC
Q 004775 234 STCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~ 255 (731)
++-...+..-.......+...+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g 389 (475)
T PLN02336 368 SDYCRSPGTPSPEFAEYIKQRG 389 (475)
T ss_pred EEeccCCCCCcHHHHHHHHhcC
Confidence 8654443322233344555443
No 112
>PHA03412 putative methyltransferase; Provisional
Probab=98.50 E-value=6.9e-07 Score=92.95 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
..+.+|||+|||+|..+..++..+... +...|+|+|+|+..+..+++++ .++.+.+.|+..++.
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~------~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----- 111 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYA------KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----- 111 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccC------CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-----
Confidence 347899999999999999998865321 2468999999999999888764 346677777654320
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
..+||.|+++||..-... ..+ .....-..+-.+++.+|.+++++|+.|+.
T Consensus 112 -----------------~~~FDlIIsNPPY~~~~~--------~d~--~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 112 -----------------DTLFDMAISNPPFGKIKT--------SDF--KGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred -----------------cCCccEEEECCCCCCccc--------ccc--CCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 247999999999765331 111 11111234556789999999998876553
No 113
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.48 E-value=2.5e-06 Score=87.02 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=82.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~ 151 (731)
.+.+.++.+|||+|||+|..+..++..+.. ...|+++|+++.++..++.++...+. .++.+...|+..++.
T Consensus 46 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~--------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 46 WLGVRPGDKVLDLACGTGDLAIALAKAVGK--------TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HhCCCCCCeEEEeCCCCCHHHHHHHHHcCC--------CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 455678899999999999999999887521 47899999999999999888766443 356777777655331
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....||.|++.- .+...+ ....+|..+.++|++||++
T Consensus 118 ---------------------~~~~~D~I~~~~------~l~~~~----------------~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 118 ---------------------PDNSFDAVTIAF------GLRNVP----------------DIDKALREMYRVLKPGGRL 154 (239)
T ss_pred ---------------------CCCCccEEEEec------ccccCC----------------CHHHHHHHHHHhccCCcEE
Confidence 125799998621 111000 1245788999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
++++-+.
T Consensus 155 i~~~~~~ 161 (239)
T PRK00216 155 VILEFSK 161 (239)
T ss_pred EEEEecC
Confidence 9875543
No 114
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.48 E-value=1.4e-06 Score=88.14 Aligned_cols=106 Identities=14% Similarity=0.057 Sum_probs=74.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.++.+|||++||.|..+..|++. ...|+|+|+++..+..+.++++..+.. +.+...|...++
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~-----------g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~--- 90 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLA-----------GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA--- 90 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---
Confidence 44455679999999999999998863 358999999999999999888776664 444455543321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~-~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. ...||.|++-... . .++ .....++..+.++|||||+++
T Consensus 91 ------------------~-~~~fD~I~~~~~~------~---------------~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 91 ------------------L-NEDYDFIFSTVVF------M---------------FLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ------------------c-cCCCCEEEEeccc------c---------------cCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 1 1469999873321 0 011 223467899999999999965
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
..
T Consensus 131 i~ 132 (195)
T TIGR00477 131 IV 132 (195)
T ss_pred EE
Confidence 54
No 115
>PLN02672 methionine S-methyltransferase
Probab=98.45 E-value=2.9e-06 Score=104.33 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEE
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----------------ANLIVT 142 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~----------------~ni~vt 142 (731)
+.+|||+|||+|..++.++... +.+.|+|+|+|+..+..+.+|+++++. .++.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~---------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW---------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 5689999999999999998764 347999999999999999999998643 256777
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc------------ccc---
Q 004775 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV------------GLG--- 207 (731)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~------------~~~--- 207 (731)
+.|..... .....+||+|+++||.-..+.+..-+...+.+.| -.+
T Consensus 190 ~sDl~~~~--------------------~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~ 249 (1082)
T PLN02672 190 ESDLLGYC--------------------RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVE 249 (1082)
T ss_pred ECchhhhc--------------------cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCC
Confidence 77654321 0001369999999998877654332211122211 111
Q ss_pred -cchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 208 -NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 208 -~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
..--.+.++|+..|.++|+|||.|+.- +.....++|..+++++.+
T Consensus 250 g~dGL~~yr~i~~~a~~~L~pgG~l~lE---iG~~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 250 DQFGLGLIARAVEEGISVIKPMGIMIFN---MGGRPGQAVCERLFERRG 295 (1082)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEEE---ECccHHHHHHHHHHHHCC
Confidence 223356789999999999999998854 445566677657787765
No 116
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.45 E-value=8.6e-07 Score=97.75 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=52.6
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
.+|||+|||+|..++.++.. ...|+|+|+++..++.+++|++.++..|+.+...|+..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-----------~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-----------FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 47999999999999988765 258999999999999999999999998999999988764
No 117
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.44 E-value=1.3e-06 Score=87.42 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=81.7
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp 150 (731)
.+.++++|+.|||-|||+|+..+..+.+..+...........+++.|+|++.++.++.|++..|... +.+.+.|+..++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 4557889999999999999988777655433100000002248999999999999999999998754 677888888865
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||.|++|||. |. .......+..+..+++..+.+.|++ +
T Consensus 102 ~---------------------~~~~~d~IvtnPPy---G~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~ 144 (179)
T PF01170_consen 102 L---------------------PDGSVDAIVTNPPY---GR-----------RLGSKKDLEKLYRQFLRELKRVLKP--R 144 (179)
T ss_dssp G---------------------TTSBSCEEEEE--S---TT-----------SHCHHHHHHHHHHHHHHHHHCHSTT--C
T ss_pred c---------------------ccCCCCEEEECcch---hh-----------hccCHHHHHHHHHHHHHHHHHHCCC--C
Confidence 1 12579999999994 21 1112234567888999999999998 4
Q ss_pred EEEEeC
Q 004775 231 IVYSTC 236 (731)
Q Consensus 231 LVYSTC 236 (731)
+|+-|+
T Consensus 145 ~v~l~~ 150 (179)
T PF01170_consen 145 AVFLTT 150 (179)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444433
No 118
>PLN03075 nicotianamine synthase; Provisional
Probab=98.44 E-value=1.6e-06 Score=93.11 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=83.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCC-ceEEEecccccCCCcccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTA-NLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR-lg~~-ni~vt~~Da~~fp~~~~~ 155 (731)
+..+|+|++||||..|+.++..-+ .|.|.++++|+|+.+++.+++.+++ .+.. ++.+..+|+...+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc----
Confidence 678999999999988777655322 2578999999999999999999865 6664 58898888876321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|+|++ + ..|.. ..+.++|.+..+.|+|||.+++-+
T Consensus 192 -----------------~l~~FDlVF~~A-L-------------i~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -----------------SLKEYDVVFLAA-L-------------VGMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -----------------ccCCcCEEEEec-c-------------ccccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 125799999973 1 11211 234689999999999999999864
No 119
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.41 E-value=9.7e-07 Score=94.99 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=92.3
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
..|.++--...+.+.+.+++++++.+|||.|||.|++.+.+.+.+.... .......++|+|+++..+.+++-++.-.+
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~--~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKR--NKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp SCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCH--HHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccc--cccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 4577666566666777777999999999999999999988888652100 00135789999999999998887775544
Q ss_pred C--CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004775 136 T--ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (731)
Q Consensus 136 ~--~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (731)
. .+..+...|...-+. ......||.||++||-+..+........-.+|... ...-...
T Consensus 102 ~~~~~~~i~~~d~l~~~~-------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~-~~~~~~~ 161 (311)
T PF02384_consen 102 IDNSNINIIQGDSLENDK-------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY-FPPKSNA 161 (311)
T ss_dssp HHCBGCEEEES-TTTSHS-------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTC-SSSTTEH
T ss_pred cccccccccccccccccc-------------------cccccccccccCCCCcccccccccccccccccccc-CCCccch
Confidence 3 233455665433111 01136899999999988764311100000122221 1111223
Q ss_pred HHHHHHHHHhhccCCCEEEEEeC
Q 004775 214 QVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LVYSTC 236 (731)
+...+.+++++||+||++++..-
T Consensus 162 ~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 162 EYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhHHHHHhhcccccceeEEec
Confidence 34478899999999999877644
No 120
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.41 E-value=2.2e-07 Score=95.10 Aligned_cols=148 Identities=16% Similarity=0.272 Sum_probs=97.8
Q ss_pred chhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC
Q 004775 40 KNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119 (731)
Q Consensus 40 k~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi 119 (731)
.++.++.++++-........+..=.....+...++....-.+||+++++.|.-|+.+|+.+.. .|.|+++|.
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~--------~g~i~tiE~ 78 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPE--------DGKITTIEI 78 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTT--------TSEEEEEES
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcc--------cceEEEecC
Confidence 345566666654432211111111111122333344445669999999999999999998753 689999999
Q ss_pred CHHHHHHHHHHHHHcCCC-ceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004775 120 DVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (731)
Q Consensus 120 d~~R~~~L~~n~kRlg~~-ni~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd 197 (731)
++.+...++.++++.|.. ++.+..+||..+ +.+. .......||.|++|+.
T Consensus 79 ~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~----------------~~~~~~~fD~VFiDa~------------ 130 (205)
T PF01596_consen 79 DPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA----------------NDGEEGQFDFVFIDAD------------ 130 (205)
T ss_dssp SHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH----------------HTTTTTSEEEEEEEST------------
T ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH----------------hccCCCceeEEEEccc------------
Confidence 999999999999999974 689999988763 2110 0011257999999985
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 198 ~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
+ ..+...+..++++|++||.||.--+
T Consensus 131 ---K----------~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 131 ---K----------RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp ---G----------GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ---c----------cchhhHHHHHhhhccCCeEEEEccc
Confidence 0 1223456677899999999987643
No 121
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.40 E-value=1.6e-06 Score=87.63 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=64.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~ 156 (731)
.|.+|||+|||+|+.++.++.. +...|+++|.++..+..+++|++.++.. ++.+.+.|+..+...
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~---- 114 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----------GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF---- 114 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH----
Confidence 4789999999999998888664 2358999999999999999999999875 688888888543110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCS 187 (731)
.......||+|++|||..
T Consensus 115 -------------~~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 115 -------------LAKKPTFDNVIYLDPPFF 132 (189)
T ss_pred -------------hhccCCCceEEEECcCCC
Confidence 000112489999999963
No 122
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=2e-06 Score=86.44 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~ 156 (731)
.|.+|||+|||+|+-.+.++.. +...++.+|.|.+.+..|++|++.++. .+..+...|+..+....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR----------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~--- 109 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR----------GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL--- 109 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC----------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc---
Confidence 5889999999999987766543 467999999999999999999999984 56788888887542110
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
.....||.|++|||.
T Consensus 110 ---------------~~~~~FDlVflDPPy 124 (187)
T COG0742 110 ---------------GTREPFDLVFLDPPY 124 (187)
T ss_pred ---------------CCCCcccEEEeCCCC
Confidence 111359999999994
No 123
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.38 E-value=1.8e-06 Score=96.23 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=78.0
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
..++++||++|||+|||.|+.+.++++.. ...|+|+|+|+..+..++++++.+ ++.+...|...+
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~----------g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l-- 225 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY----------GVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL-- 225 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc--
Confidence 44678999999999999999999988753 358999999999999998877432 345555544321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
...||+|++- +++..-+ ......++..+.++|||||++
T Consensus 226 ----------------------~~~fD~Ivs~------~~~ehvg--------------~~~~~~~l~~i~r~LkpGG~l 263 (383)
T PRK11705 226 ----------------------NGQFDRIVSV------GMFEHVG--------------PKNYRTYFEVVRRCLKPDGLF 263 (383)
T ss_pred ----------------------CCCCCEEEEe------CchhhCC--------------hHHHHHHHHHHHHHcCCCcEE
Confidence 1579999861 1111100 011245788899999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+.++.+.
T Consensus 264 vl~~i~~ 270 (383)
T PRK11705 264 LLHTIGS 270 (383)
T ss_pred EEEEccC
Confidence 9876543
No 124
>PRK00811 spermidine synthase; Provisional
Probab=98.37 E-value=3.9e-06 Score=89.81 Aligned_cols=133 Identities=15% Similarity=0.134 Sum_probs=90.6
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecc
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHE 145 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-----~~ni~vt~~D 145 (731)
++++.. ...+||++|+|.|+.+..++... +...|+++|+|+..++++++.+..++ -+++.++..|
T Consensus 70 ~~~~~~-~p~~VL~iG~G~G~~~~~~l~~~---------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D 139 (283)
T PRK00811 70 PLFAHP-NPKRVLIIGGGDGGTLREVLKHP---------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD 139 (283)
T ss_pred HHhhCC-CCCEEEEEecCchHHHHHHHcCC---------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence 344333 35699999999999888876531 23689999999999999999886542 3578889999
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
+..|-. ....+||+|++|.+- . |.+ ..+-...+.++.+.+.|
T Consensus 140 a~~~l~--------------------~~~~~yDvIi~D~~d---p-----------~~~----~~~l~t~ef~~~~~~~L 181 (283)
T PRK00811 140 GIKFVA--------------------ETENSFDVIIVDSTD---P-----------VGP----AEGLFTKEFYENCKRAL 181 (283)
T ss_pred hHHHHh--------------------hCCCcccEEEECCCC---C-----------CCc----hhhhhHHHHHHHHHHhc
Confidence 877521 012579999999741 0 111 01123457788889999
Q ss_pred cCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 226 KVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 226 KpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
++||.+|.-+-+ |......+..+++.
T Consensus 182 ~~gGvlv~~~~~--~~~~~~~~~~i~~t 207 (283)
T PRK00811 182 KEDGIFVAQSGS--PFYQADEIKDMHRK 207 (283)
T ss_pred CCCcEEEEeCCC--cccCHHHHHHHHHH
Confidence 999998865333 33445556655554
No 125
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=2.4e-06 Score=91.07 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=88.1
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH 148 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~ 148 (731)
....|.++||++|||++||=|+.+..+|+.. ...|+++++|+.-...++..++..|+. ++.+...|-..
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y----------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY----------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc----------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 3456789999999999999999999999874 368999999999999999999999987 78887776555
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
+. ..||+|+. -|.+ ..... ..-...+.++.++|+||
T Consensus 134 ~~------------------------e~fDrIvS------vgmf-------Ehvg~-------~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 134 FE------------------------EPFDRIVS------VGMF-------EHVGK-------ENYDDFFKKVYALLKPG 169 (283)
T ss_pred cc------------------------cccceeee------hhhH-------HHhCc-------ccHHHHHHHHHhhcCCC
Confidence 32 44999984 3332 11111 11245688899999999
Q ss_pred CEEEEEeCC
Q 004775 229 GRIVYSTCS 237 (731)
Q Consensus 229 G~LVYSTCS 237 (731)
|+++.-|-+
T Consensus 170 G~~llh~I~ 178 (283)
T COG2230 170 GRMLLHSIT 178 (283)
T ss_pred ceEEEEEec
Confidence 999876544
No 126
>PHA03411 putative methyltransferase; Provisional
Probab=98.33 E-value=7.5e-06 Score=87.08 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=93.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
++..++.+|||+|||+|..+..++... +...|+++|+++..+..+++++ +++.+.+.|+..+..
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~---------~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-- 123 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRC---------KPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-- 123 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc--
Confidence 455667899999999999988876652 1358999999999888876642 467778888765421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc--cccchHHH-HHHHHHHHHhhccCCCE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG--LGNGLHSL-QVQIAMRGISLLKVGGR 230 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~--~~~~L~~l-Q~~IL~rAl~lLKpGG~ 230 (731)
..+||.|+++||.-... +.-++.|..- .......+ -.+.+..+-.+|+|+|.
T Consensus 124 --------------------~~kFDlIIsNPPF~~l~-----~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~ 178 (279)
T PHA03411 124 --------------------NEKFDVVISNPPFGKIN-----TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGS 178 (279)
T ss_pred --------------------cCCCcEEEEcCCccccC-----chhhhhhhhhccCccccccccHHHHHhhhHheecCCce
Confidence 25799999999965433 2222332111 11111222 24678888889999996
Q ss_pred E--EEEeCC-CCCcCcHHHHHHHHHHCC
Q 004775 231 I--VYSTCS-MNPVENEAVVAEILRKCE 255 (731)
Q Consensus 231 L--VYSTCS-l~p~ENEaVV~~~L~~~~ 255 (731)
+ +||+=- ++-.=..+-...+|+.+|
T Consensus 179 ~~~~yss~~~y~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 179 AGFAYSGRPYYDGTMKSNKYLKWSKQTG 206 (279)
T ss_pred EEEEEeccccccccCCHHHHHHHHHhcC
Confidence 5 366522 244455566778888876
No 127
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.33 E-value=8.2e-06 Score=83.98 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=78.0
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++.+|||+|||+|..+..++.. ...|+++|.++..+..+..++...+. .+.+...++..++.
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~--- 109 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARL-----------GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA--- 109 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHc-----------CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh---
Confidence 3557889999999999988877653 24699999999999999888877665 45555555544321
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||+|++.-. +...+ ....+|.++.++|++||+++.+
T Consensus 110 -----------------~~~~~fD~Ii~~~~------l~~~~----------------~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 110 -----------------EHPGQFDVVTCMEM------LEHVP----------------DPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -----------------hcCCCccEEEEhhH------hhccC----------------CHHHHHHHHHHHcCCCcEEEEE
Confidence 11257999997321 11111 0135788999999999999998
Q ss_pred eCCC
Q 004775 235 TCSM 238 (731)
Q Consensus 235 TCSl 238 (731)
++.-
T Consensus 151 ~~~~ 154 (233)
T PRK05134 151 TLNR 154 (233)
T ss_pred ecCC
Confidence 8753
No 128
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.32 E-value=4.7e-06 Score=89.18 Aligned_cols=102 Identities=19% Similarity=0.097 Sum_probs=75.3
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||++||.|..+..++.. ...|+|+|+|+..+..++++++..+. ++.+...|....+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-----------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~------- 180 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-----------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS------- 180 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc-------
Confidence 3449999999999999888763 36899999999999999999888777 6777666654321
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHHhhccCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L-~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
. ...||.|++-.. +. .+ ......++....++|+|||++++.
T Consensus 181 --------------~-~~~fD~I~~~~v------l~---------------~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 --------------I-QEEYDFILSTVV------LM---------------FLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred --------------c-cCCccEEEEcch------hh---------------hCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 257999997321 10 01 123457889999999999997653
No 129
>PRK04457 spermidine synthase; Provisional
Probab=98.32 E-value=6.2e-06 Score=87.38 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=83.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~fp~~~~~ 155 (731)
.++.+|||+|+|.|+.+..++... |...|+++|+|+..++.+++++...+ .+++.++..|+..+-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~---------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---- 131 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL---------PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---- 131 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH----
Confidence 345689999999999998887764 45789999999999999888764333 2678889999876521
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....||.|++|+- .+.+. |. +-...+++..+.+.|+|||+++...
T Consensus 132 ----------------~~~~~yD~I~~D~~-~~~~~----~~-------------~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 132 ----------------VHRHSTDVILVDGF-DGEGI----ID-------------ALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred ----------------hCCCCCCEEEEeCC-CCCCC----cc-------------ccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 01257999999963 22221 10 0113578899999999999999865
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
++-
T Consensus 178 ~~~ 180 (262)
T PRK04457 178 WSR 180 (262)
T ss_pred CCC
Confidence 543
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.30 E-value=7e-06 Score=90.08 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+++.+. .+.|+++|.++..+..++++.. ..++.+...|+..++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~---------~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp------ 173 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD---------AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP------ 173 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC---------CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC------
Confidence 4788999999999999888877642 3689999999999888777543 345666777766543
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||+|++. +++.. |. ...++|+++.++|||||+++..
T Consensus 174 ---------------~~~~sFDvVIs~------~~L~~-------~~---------d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 174 ---------------FPTDYADRYVSA------GSIEY-------WP---------DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred ---------------CCCCceeEEEEc------Chhhh-------CC---------CHHHHHHHHHHhcCCCcEEEEE
Confidence 112579999972 11211 11 1135799999999999999875
No 131
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=3e-06 Score=87.43 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=94.0
Q ss_pred CccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEE
Q 004775 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVT 142 (731)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt 142 (731)
...-.+..+++......+||.++.+-|.-|+.||..+.. .|+++++|++++|...+++|+++.|+.. +.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~--------~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~ 116 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD--------DGRLTTIERDEERAEIARENLAEAGVDDRIELL 116 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC--------CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE
Confidence 334445566777788999999999999999999998753 5899999999999999999999999876 5555
Q ss_pred e-cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 143 N-HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 143 ~-~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
. .|+...-. ......||.|++|+- ...+...+..+
T Consensus 117 ~~gdal~~l~-------------------~~~~~~fDliFIDad-------------------------K~~yp~~le~~ 152 (219)
T COG4122 117 LGGDALDVLS-------------------RLLDGSFDLVFIDAD-------------------------KADYPEYLERA 152 (219)
T ss_pred ecCcHHHHHH-------------------hccCCCccEEEEeCC-------------------------hhhCHHHHHHH
Confidence 5 36554210 012478999999984 12345678899
Q ss_pred HhhccCCCEEEEEeCCC
Q 004775 222 ISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 222 l~lLKpGG~LVYSTCSl 238 (731)
+++|+|||.||.=--.+
T Consensus 153 ~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 153 LPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHhCCCcEEEEeeccc
Confidence 99999999998654333
No 132
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.30 E-value=2.1e-06 Score=84.87 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=57.4
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
..|||+|||-||-|.|+|... ..|+|+|+|+.|+++++||++-+|+ .++.++++|...+...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-----------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~------ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-----------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR------ 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG------
T ss_pred CEEEEeccCcCHHHHHHHHhC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh------
Confidence 369999999999999998862 4799999999999999999999996 5899999998764210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCc
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGt 191 (731)
... ...||.|+++||=.|-.-
T Consensus 64 -----------~~~-~~~~D~vFlSPPWGGp~Y 84 (163)
T PF09445_consen 64 -----------LKS-NKIFDVVFLSPPWGGPSY 84 (163)
T ss_dssp -----------B-------SEEEE---BSSGGG
T ss_pred -----------ccc-cccccEEEECCCCCCccc
Confidence 000 112899999999655443
No 133
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.28 E-value=6.3e-06 Score=83.23 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..++..+.. .+.++++|+++..+..+.++.. ...++.+...|+..++.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~--------~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~---- 102 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD--------RGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF---- 102 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC--------CceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC----
Confidence 457899999999999999998877421 2789999999999998887765 23456777777765431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||+|++.- .+...++ -..+|+++.++|+|||+++..+
T Consensus 103 -----------------~~~~~D~i~~~~------~~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 103 -----------------EDNSFDAVTIAF------GLRNVTD----------------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred -----------------CCCcEEEEEEee------eeCCccc----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 125799998621 1111111 1357899999999999999876
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
.+.
T Consensus 144 ~~~ 146 (223)
T TIGR01934 144 FSK 146 (223)
T ss_pred ecC
Confidence 553
No 134
>PRK06922 hypothetical protein; Provisional
Probab=98.27 E-value=7.5e-06 Score=95.72 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+++..++.+|||+|||+|..+..+++.. |.+.|+|+|+++..+..++.+....+ .++.+...|+..+|..
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~ 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSS 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccc
Confidence 4566689999999999999888887763 46899999999999999988766554 3566777777664421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc-hHHHHHHHHHHHHhhccCCCEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG-LHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~-L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||.|++..+ +. -|..+-+..... -.....++|+.+.++|||||++
T Consensus 483 -------------------fedeSFDvVVsn~v------LH----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 483 -------------------FEKESVDTIVYSSI------LH----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred -------------------cCCCCEEEEEEchH------HH----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 12367999997432 00 000000100000 1234577899999999999999
Q ss_pred EEEeCCCC
Q 004775 232 VYSTCSMN 239 (731)
Q Consensus 232 VYSTCSl~ 239 (731)
+.+.-++.
T Consensus 534 II~D~v~~ 541 (677)
T PRK06922 534 IIRDGIMT 541 (677)
T ss_pred EEEeCccC
Confidence 98743343
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.26 E-value=6.6e-06 Score=81.00 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=65.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++.. ..++.+++.|+..++.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~-----------~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~- 73 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER-----------AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL- 73 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc-----------CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc-
Confidence 456788999999999999999998775 26899999999999999887753 4578899999877531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
....||.|+.++|.
T Consensus 74 --------------------~~~~~d~vi~n~Py 87 (169)
T smart00650 74 --------------------PKLQPYKVVGNLPY 87 (169)
T ss_pred --------------------cccCCCEEEECCCc
Confidence 11368999999994
No 136
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.25 E-value=1.1e-05 Score=86.96 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=85.2
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~ 151 (731)
.++..++.+|||+|||+|..+..+++.. |.+.++++|. +..+..+++++.+.+.. ++.+..+|+...+
T Consensus 144 ~~~~~~~~~vlDiG~G~G~~~~~~~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 144 EAKLDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred HcCCCCCCEEEEeCCchhHHHHHHHHHC---------CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 4567888999999999999999888773 4678999997 68888888898888864 5778888765321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
...+|.|++ + + +...|+. ..-.++|+++.+.|||||+|
T Consensus 213 ----------------------~~~~D~v~~----~--~-------~lh~~~~-------~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 213 ----------------------YPEADAVLF----C--R-------ILYSANE-------QLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred ----------------------CCCCCEEEe----E--h-------hhhcCCh-------HHHHHHHHHHHHhcCCCCEE
Confidence 123688875 1 1 1122322 12357899999999999999
Q ss_pred EEEeCCCCCcCc
Q 004775 232 VYSTCSMNPVEN 243 (731)
Q Consensus 232 VYSTCSl~p~EN 243 (731)
+.....+...++
T Consensus 251 ~i~d~~~~~~~~ 262 (306)
T TIGR02716 251 LILDMVIDDPEN 262 (306)
T ss_pred EEEEeccCCCCC
Confidence 877655554443
No 137
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.25 E-value=1.8e-05 Score=80.83 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=75.6
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
+|||++||.|+.+..+++.. +...|+++|+|+..+..++.+++..|.. ++.+...|....|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------- 64 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH---------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------- 64 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--------
Confidence 79999999999999888764 2468999999999999999998887763 56777776543210
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
...||+|++- +++ ..+ .....++..+.++|||||+++.++.
T Consensus 65 --------------~~~fD~I~~~------~~l-------~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 65 --------------PDTYDLVFGF------EVI-------HHI---------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred --------------CCCCCEeehH------HHH-------HhC---------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1479999851 111 100 1134688899999999999998754
No 138
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.23 E-value=1.4e-05 Score=86.28 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=68.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+|.++||..++|+.+|-||.|..|++.+. .|.|+|+|.|+..+...+++++.++ .++.+++.+...+...
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~---------~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLG---------TGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEH 84 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCC---------CCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHH
Confidence 46778999999999999999999998753 4899999999999999988877553 4677777766665321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
. . ......||.||+|-=+|+.
T Consensus 85 l--------------~--~~~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 85 L--------------D--ELLVTKIDGILVDLGVSSP 105 (305)
T ss_pred H--------------H--hcCCCcccEEEEeccCCHh
Confidence 1 0 0112468999998877653
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.23 E-value=7.4e-06 Score=94.84 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=91.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH--HHHc-----CCCceEEEecccccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TKRM-----CTANLIVTNHEAQHF 149 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n--~kRl-----g~~ni~vt~~Da~~f 149 (731)
....+|||+|+|.|..+..++.. . +...|+++|+|++.++.++++ +..+ .-+++.+++.|+..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~--~-------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY--P-------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC--C-------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 44579999999999988777652 1 126999999999999999884 2222 235788888888775
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
.. ....+||.|++|.|-.. .|... +-...++++.+.+.|||||
T Consensus 367 l~--------------------~~~~~fDvIi~D~~~~~------~~~~~-----------~L~t~ef~~~~~~~L~pgG 409 (521)
T PRK03612 367 LR--------------------KLAEKFDVIIVDLPDPS------NPALG-----------KLYSVEFYRLLKRRLAPDG 409 (521)
T ss_pred HH--------------------hCCCCCCEEEEeCCCCC------Ccchh-----------ccchHHHHHHHHHhcCCCe
Confidence 21 11257999999986211 11110 1122567788899999999
Q ss_pred EEEEEeCCCCCcCcHHH---HHHHHHHCCCcEEEEecCccCCc
Q 004775 230 RIVYSTCSMNPVENEAV---VAEILRKCEGSVELVDVSNEVPQ 269 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaV---V~~~L~~~~g~~elvd~s~~lP~ 269 (731)
.++..++|- ...... +.+.|++.+ |.........|.
T Consensus 410 ~lv~~~~~~--~~~~~~~~~i~~~l~~~g--f~v~~~~~~vps 448 (521)
T PRK03612 410 LLVVQSTSP--YFAPKAFWSIEATLEAAG--LATTPYHVNVPS 448 (521)
T ss_pred EEEEecCCc--ccchHHHHHHHHHHHHcC--CEEEEEEeCCCC
Confidence 999877653 333444 344444443 333333334454
No 140
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.23 E-value=7.6e-06 Score=84.17 Aligned_cols=137 Identities=26% Similarity=0.381 Sum_probs=94.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.++||.+||-++||+|..-.|++..++. +|.|+|++.++.-..-|.+.+++- +|++.+-.||.. |.-.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~--------~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~-P~~Y 137 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGP--------DGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH-PEKY 137 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTT--------TSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS-GGGG
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCC--------CCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC-hHHh
Confidence 45789999999999999999999999863 799999999999988888777653 689989999986 3211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH-HHHHhhccCCCEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIV 232 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL-~rAl~lLKpGG~LV 232 (731)
..--..+|.|++|+. +..|.+|+ .+|-.+||+||.++
T Consensus 138 -----------------~~lv~~VDvI~~DVa-------------------------Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 138 -----------------RMLVEMVDVIFQDVA-------------------------QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp -----------------TTTS--EEEEEEE-S-------------------------STTHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------hcccccccEEEecCC-------------------------ChHHHHHHHHHHHhhccCCcEEE
Confidence 011258999999986 12355554 45667999999988
Q ss_pred EEe--CCC-CCcCcHHHHHHHHHHCC-CcEEEEec
Q 004775 233 YST--CSM-NPVENEAVVAEILRKCE-GSVELVDV 263 (731)
Q Consensus 233 YST--CSl-~p~ENEaVV~~~L~~~~-g~~elvd~ 263 (731)
.+- -|+ .....++|.+..+++.. ..+++++.
T Consensus 176 i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 176 ISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp EEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE
Confidence 774 334 34567777777766532 23444443
No 141
>PRK01581 speE spermidine synthase; Validated
Probab=98.21 E-value=1.1e-05 Score=88.96 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=87.2
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH--HH---H--cCCCceEEE
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TK---R--MCTANLIVT 142 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n--~k---R--lg~~ni~vt 142 (731)
|++++-+.| .+||++|+|.|+-+..++.. .+...|+++|+|+..++++++. +. + +.-+++.++
T Consensus 143 p~m~~h~~P-krVLIIGgGdG~tlrelLk~---------~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv 212 (374)
T PRK01581 143 PIMSKVIDP-KRVLILGGGDGLALREVLKY---------ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH 212 (374)
T ss_pred HHHHhCCCC-CEEEEECCCHHHHHHHHHhc---------CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE
Confidence 444444454 49999999999855544432 1247999999999999988852 11 1 234678899
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004775 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (731)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (731)
..|+..|.. .....||+|++|.| +... . ... .-.....+..+.
T Consensus 213 i~Da~~fL~--------------------~~~~~YDVIIvDl~---DP~~-----------~-~~~--~LyT~EFy~~~~ 255 (374)
T PRK01581 213 VCDAKEFLS--------------------SPSSLYDVIIIDFP---DPAT-----------E-LLS--TLYTSELFARIA 255 (374)
T ss_pred ECcHHHHHH--------------------hcCCCccEEEEcCC---Cccc-----------c-chh--hhhHHHHHHHHH
Confidence 999887531 11257999999976 1110 0 001 112356788889
Q ss_pred hhccCCCEEEEEeCCCCCcCcHHHH---HHHHHHCC
Q 004775 223 SLLKVGGRIVYSTCSMNPVENEAVV---AEILRKCE 255 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl~p~ENEaVV---~~~L~~~~ 255 (731)
+.|+|||.+|.-.. +|.....++ ...|++.+
T Consensus 256 ~~LkPgGV~V~Qs~--sp~~~~~~~~~i~~tL~~af 289 (374)
T PRK01581 256 TFLTEDGAFVCQSN--SPADAPLVYWSIGNTIEHAG 289 (374)
T ss_pred HhcCCCcEEEEecC--ChhhhHHHHHHHHHHHHHhC
Confidence 99999999877633 444555553 44444444
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.21 E-value=1.4e-05 Score=84.87 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=86.8
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecccc
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQ 147 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg----~~ni~vt~~Da~ 147 (731)
+++...|. +||++++|.|+.+..++... +...|+++|+|+..++.+++.+..++ .+++.+...|+.
T Consensus 67 l~~~~~p~-~VL~iG~G~G~~~~~ll~~~---------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~ 136 (270)
T TIGR00417 67 LFTHPNPK-HVLVIGGGDGGVLREVLKHK---------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF 136 (270)
T ss_pred hhcCCCCC-EEEEEcCCchHHHHHHHhCC---------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence 33344444 99999999999877765532 24689999999999999988876543 346777777776
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
.+-. .....||+|++|++- ..+. ...| ...+.++.+.++|+|
T Consensus 137 ~~l~--------------------~~~~~yDvIi~D~~~-~~~~---------------~~~l--~~~ef~~~~~~~L~p 178 (270)
T TIGR00417 137 KFLA--------------------DTENTFDVIIVDSTD-PVGP---------------AETL--FTKEFYELLKKALNE 178 (270)
T ss_pred HHHH--------------------hCCCCccEEEEeCCC-CCCc---------------ccch--hHHHHHHHHHHHhCC
Confidence 5421 012579999999862 1111 0011 224677888999999
Q ss_pred CCEEEEEeCCCCCcCcHHHHHHHHH
Q 004775 228 GGRIVYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 228 GG~LVYSTCSl~p~ENEaVV~~~L~ 252 (731)
||.++..++|. .-+...+..+++
T Consensus 179 gG~lv~~~~~~--~~~~~~~~~~~~ 201 (270)
T TIGR00417 179 DGIFVAQSESP--WIQLELITDLKR 201 (270)
T ss_pred CcEEEEcCCCc--ccCHHHHHHHHH
Confidence 99999886653 334455554443
No 143
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.19 E-value=1.1e-05 Score=82.24 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=78.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
..+.+|||+|||+|..+.+++.. ...++++|.++..+..++.++.+.+..++.+...++..++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----- 107 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-----------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE----- 107 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc-----
Confidence 34789999999999988887653 23599999999999999988887766556777666655431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.....||.|++... +... .....+|..+.++|++||.++.++|
T Consensus 108 ---------------~~~~~~D~i~~~~~-------------l~~~---------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 108 ---------------KGAKSFDVVTCMEV-------------LEHV---------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ---------------CCCCCccEEEehhH-------------HHhC---------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 01257999997321 1100 1124578899999999999999877
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 151 ~ 151 (224)
T TIGR01983 151 N 151 (224)
T ss_pred C
Confidence 4
No 144
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.16 E-value=1e-05 Score=82.36 Aligned_cols=102 Identities=24% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+.+|||+|||+|..+..+++.. +...|+++|+++..+..+..... +++.+...|+..++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~------ 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF---------PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL------ 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC---------CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC------
Confidence 35789999999999999998764 34679999999998877765432 366677777665431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|++..... |.. .-.++|.++.++||+||.+++++
T Consensus 95 ---------------~~~~fD~vi~~~~l~--------------~~~--------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 95 ---------------EDSSFDLIVSNLALQ--------------WCD--------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ---------------CCCceeEEEEhhhhh--------------hcc--------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 125799999753211 110 11357899999999999999874
No 145
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.15 E-value=7.8e-06 Score=84.35 Aligned_cols=126 Identities=31% Similarity=0.407 Sum_probs=98.3
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
-++||.+||=++||+|..-.|+...++ |.|.|+|++.+..--.-|...+++- +||+.+..||+.--..+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVG--------peG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYR- 221 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVG--------PEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYR- 221 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccC--------CCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchhee-
Confidence 478999999999999999999999886 4799999999987777777766543 68888888988721111
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH-HHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI-AMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I-L~rAl~lLKpGG~LVY 233 (731)
..-..+|.|+.|++ . ..|.+| ..+|..+||+||-+|.
T Consensus 222 -----------------mlVgmVDvIFaDva---------q----------------pdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 222 -----------------MLVGMVDVIFADVA---------Q----------------PDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred -----------------eeeeeEEEEeccCC---------C----------------chhhhhhhhhhhhhhccCCeEEE
Confidence 11257999999997 1 234444 4578889999999887
Q ss_pred E---eCCCCCcCcHHHHHHHHHH
Q 004775 234 S---TCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 234 S---TCSl~p~ENEaVV~~~L~~ 253 (731)
| .|+-+...+|+|-+.-.++
T Consensus 260 sikancidstv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 260 SIKANCIDSTVFAEAVFAAEVKK 282 (317)
T ss_pred EEecccccccccHHHHHHHHHHH
Confidence 6 7999999999998876654
No 146
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=2.1e-05 Score=78.70 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=82.7
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec-ccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~-Da~~fp~~~~ 154 (731)
++|+++|||++||||+|+..+.+..+ |.|.|+++|+- .-.......+... |..+ |....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~--------p~g~v~gVDll-----------h~~p~~Ga~~i~~~dvtd-p~~~~ 126 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVN--------PNGMVLGVDLL-----------HIEPPEGATIIQGNDVTD-PETYR 126 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhC--------CCceEEEEeee-----------eccCCCCcccccccccCC-HHHHH
Confidence 46899999999999999988877753 68999999971 1112222222222 2222 11000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
+ .-...+...+|+||.|.---.+|. +..+-..+..+-...|.-|+.+++|+|.+|
T Consensus 127 -----k-------i~e~lp~r~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv-- 181 (232)
T KOG4589|consen 127 -----K-------IFEALPNRPVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV-- 181 (232)
T ss_pred -----H-------HHHhCCCCcccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE--
Confidence 0 000123468999999976555664 122234456677788899999999999887
Q ss_pred eCCCCCcCcHHHHHHHHHH
Q 004775 235 TCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~ 253 (731)
|-+.--+.++-...-|..
T Consensus 182 -cK~w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 182 -CKLWDGSEEALLQRRLQA 199 (232)
T ss_pred -EEEecCCchHHHHHHHHH
Confidence 555555555555555554
No 147
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.07 E-value=3.5e-05 Score=78.80 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=50.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
+.++.+|||+|||.|..+..++.. ...|+|+|+|+..+..++.++...+. .++.+...|+..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-----------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-----------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 567899999999999999888753 25899999999999999998876665 367777666544
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.07 E-value=1.8e-05 Score=80.37 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=91.5
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
.+||+|||-|..++++|..- |.-.++|+|+...++..+...+.+.+..|+.+++.||..+...
T Consensus 20 l~lEIG~G~G~~l~~~A~~~---------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-------- 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN---------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-------- 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS---------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH--------
T ss_pred eEEEecCCCCHHHHHHHHHC---------CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh--------
Confidence 99999999999999998872 5679999999999999999999999999999999999873211
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCC
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p 240 (731)
......+|.|.+-=| |-|.+-.. .-.+ -+|...|....+.|++||.|...|
T Consensus 83 ----------~~~~~~v~~i~i~FP-----------DPWpK~rH-~krR--l~~~~fl~~~~~~L~~gG~l~~~T----- 133 (195)
T PF02390_consen 83 ----------LFPPGSVDRIYINFP-----------DPWPKKRH-HKRR--LVNPEFLELLARVLKPGGELYFAT----- 133 (195)
T ss_dssp ----------HSTTTSEEEEEEES----------------SGGG-GGGS--TTSHHHHHHHHHHEEEEEEEEEEE-----
T ss_pred ----------cccCCchheEEEeCC-----------CCCcccch-hhhh--cCCchHHHHHHHHcCCCCEEEEEe-----
Confidence 122367899988655 44543111 1111 245667888889999999998876
Q ss_pred cCcHHHHHHHHH---HCCCcEEEEe
Q 004775 241 VENEAVVAEILR---KCEGSVELVD 262 (731)
Q Consensus 241 ~ENEaVV~~~L~---~~~g~~elvd 262 (731)
.++.....+++ .+.+.++.+.
T Consensus 134 -D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 134 -DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred -CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 44444444443 3223466654
No 149
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.04 E-value=4.7e-06 Score=85.76 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=90.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH--HHcCCCceEEEecccccCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT--KRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~--kRlg~~ni~vt~~Da~~fp~ 151 (731)
..++.|.+|||.|.|-|..++..++. +...|+.++.|+.=+.++.-|= ..+-..++.++.+|+..+-
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V- 198 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER----------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV- 198 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc----------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-
Confidence 34667999999999999988777664 2459999999998877655441 2222236788888887642
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.++.+.+||.|+-|||- ++... +-.-.++-+.-.+.||+||+|
T Consensus 199 ------------------~~~~D~sfDaIiHDPPR---------------fS~Ag----eLYseefY~El~RiLkrgGrl 241 (287)
T COG2521 199 ------------------KDFDDESFDAIIHDPPR---------------FSLAG----ELYSEEFYRELYRILKRGGRL 241 (287)
T ss_pred ------------------hcCCccccceEeeCCCc---------------cchhh----hHhHHHHHHHHHHHcCcCCcE
Confidence 12345789999999992 22111 112245566678899999999
Q ss_pred E-EEeCC---CCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 232 V-YSTCS---MNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 232 V-YSTCS---l~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
. |.--. ..-..-..=|++-|++-| |+.|..
T Consensus 242 FHYvG~Pg~ryrG~d~~~gVa~RLr~vG--F~~v~~ 275 (287)
T COG2521 242 FHYVGNPGKRYRGLDLPKGVAERLRRVG--FEVVKK 275 (287)
T ss_pred EEEeCCCCcccccCChhHHHHHHHHhcC--ceeeee
Confidence 8 54222 112233455677777765 554443
No 150
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.03 E-value=6.7e-05 Score=80.99 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=80.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~fp~~~~~ 155 (731)
.++.+|||++||+|.||..|++.+.. ...|+|+|+|...+..+.+++.+.. --++..+++|......+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~--------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-- 131 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ--------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-- 131 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc--------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--
Confidence 46789999999999999999988642 3679999999999999988876532 123555677765421100
Q ss_pred CCCCCCCccccccccccccccc---cEEEe--cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 156 KNFSSASDKGIESESNMGQLLF---DRVLC--DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~F---DrIL~--D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
..+ +++++ +.+ -|.+ -...+.++|++..+.|+|||+
T Consensus 132 -------------------~~~~~~~~~~~~~gs~---~~~~-----------------~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 132 -------------------PEPAAGRRLGFFPGST---IGNF-----------------TPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred -------------------cccccCCeEEEEeccc---ccCC-----------------CHHHHHHHHHHHHHhcCCCCE
Confidence 111 33332 211 1211 022346789999999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHH
Q 004775 231 IVYSTCSMNPVENEAVVAEI 250 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~ 250 (731)
++... +-..+.+++..+
T Consensus 173 ~lig~---d~~~~~~~~~~a 189 (301)
T TIGR03438 173 LLIGV---DLVKDPAVLEAA 189 (301)
T ss_pred EEEec---cCCCCHHHHHHh
Confidence 99864 444666666444
No 151
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.03 E-value=1.6e-05 Score=75.90 Aligned_cols=99 Identities=27% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||++||.|..+..++.. +. .|+++|+++..+.. .++...+.+....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~----------~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~------ 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR----------GF-EVTGVDISPQMIEK----------RNVVFDNFDAQDP------ 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT----------TS-EEEEEESSHHHHHH----------TTSEEEEEECHTH------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh----------CC-EEEEEECCHHHHhh----------hhhhhhhhhhhhh------
Confidence 467899999999999988877543 23 89999999998876 2233333332221
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
......||.|+|- .++.+-++ -..+|....++|||||+++.++
T Consensus 73 ---------------~~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 73 ---------------PFPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp ---------------HCHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEE
T ss_pred ---------------hccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEE
Confidence 1223689999971 22222222 2467899999999999999986
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
=..
T Consensus 116 ~~~ 118 (161)
T PF13489_consen 116 PNR 118 (161)
T ss_dssp EBT
T ss_pred cCC
Confidence 443
No 152
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.03 E-value=3.9e-05 Score=87.57 Aligned_cols=110 Identities=22% Similarity=0.126 Sum_probs=76.5
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+++..++.+|||+|||+|..|..+++. .+.|+|+|+++..+...+... ...+++.+.+.|+....
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~-----------~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~-- 96 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKK-----------AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD-- 96 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhh-----------CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc--
Confidence 445567889999999999999998875 258999999999887644321 12357788888775321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~-~lQ~~IL~rAl~lLKpGG~L 231 (731)
.......||.|+|..++. .+. ....++|.++.++|||||+|
T Consensus 97 -----------------~~~~~~~fD~I~~~~~l~---------------------~l~~~~~~~~l~~~~r~Lk~gG~l 138 (475)
T PLN02336 97 -----------------LNISDGSVDLIFSNWLLM---------------------YLSDKEVENLAERMVKWLKVGGYI 138 (475)
T ss_pred -----------------cCCCCCCEEEEehhhhHH---------------------hCCHHHHHHHHHHHHHhcCCCeEE
Confidence 011235799999844310 011 11357899999999999999
Q ss_pred EEEe
Q 004775 232 VYST 235 (731)
Q Consensus 232 VYST 235 (731)
++.-
T Consensus 139 ~~~d 142 (475)
T PLN02336 139 FFRE 142 (475)
T ss_pred EEEe
Confidence 8863
No 153
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.02 E-value=3.4e-05 Score=78.21 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=90.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
|.-..-.++|+++||-|..|.+||.. -..|+|+|+++..++.+++++.. .+++.+...+...+.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-----------Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~--- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-----------CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW--- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-----------EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-----
T ss_pred cCccccceeEecCCCccHHHHHHHHh-----------hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC---
Confidence 44445578999999999999999876 36899999999999999887653 478888888765431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
+...||.|++ |.-+..-.. .....+++.+....|+|||.||.
T Consensus 103 -------------------P~~~FDLIV~----SEVlYYL~~---------------~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SEVLYYLDD---------------AEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp --------------------SS-EEEEEE----ES-GGGSSS---------------HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------------------CCCCeeEEEE----ehHhHcCCC---------------HHHHHHHHHHHHHHhCCCCEEEE
Confidence 2378999996 433322111 12335678888999999999998
Q ss_pred EeCC-------CCCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004775 234 STCS-------MNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (731)
Q Consensus 234 STCS-------l~p~ENEaVV~~~L~~~~g~~elvd~s~~lP 268 (731)
.+-. =|+. ..+-|.++|.+.=-.++.+.+....+
T Consensus 145 g~~rd~~c~~wgh~~-ga~tv~~~~~~~~~~~~~~~~~~~~~ 185 (201)
T PF05401_consen 145 GHARDANCRRWGHAA-GAETVLEMLQEHLTEVERVECRGGSP 185 (201)
T ss_dssp EEE-HHHHHHTT-S---HHHHHHHHHHHSEEEEEEEEE-SST
T ss_pred EEecCCcccccCccc-chHHHHHHHHHHhhheeEEEEcCCCC
Confidence 6432 1233 45566777776555677777765544
No 154
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.02 E-value=8.7e-06 Score=87.70 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=71.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+|.++||..|||+++|.|+.|..+++.+. +.|.|+|+|.|+..++.++++++. ..++.+.+.+...+...
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~--------~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLG--------PKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCC--------CCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 45678999999999999999999998864 258999999999999999887765 45788888887776432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
. ......||.||+|-=+|..
T Consensus 84 l-----------------~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 84 L-----------------AEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred H-----------------HcCCCccCEEEECCCcccc
Confidence 1 0011379999999887765
No 155
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.01 E-value=6e-06 Score=89.18 Aligned_cols=195 Identities=22% Similarity=0.263 Sum_probs=104.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+|.++|+..+||+.-|-||.|..|++.+. .|.|+|+|.|+..+..+.++++.. ..++.+.+.+..++...
T Consensus 15 ~L~~~~~g~~vD~T~G~GGHS~aiL~~~~---------~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 15 ALNPKPGGIYVDCTFGGGGHSKAILEKLP---------NGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHT--TT-EEEETT-TTSHHHHHHHHT-T---------T-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHH
T ss_pred hhCcCCCceEEeecCCcHHHHHHHHHhCC---------CCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHH
Confidence 46689999999999999999999998763 499999999999998877655433 35688888776665432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCC--------------Cc--cccChh-------hhhhcc------
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD--------------GT--LRKAPD-------IWRKWN------ 203 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd--------------Gt--lrk~pd-------~~~~w~------ 203 (731)
.. .. .....+|.||+|-=+|.. |- ||-+|+ +...|+
T Consensus 85 l~--------------~~-~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~ 149 (310)
T PF01795_consen 85 LK--------------EL-NGINKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELAR 149 (310)
T ss_dssp HH--------------HT-TTTS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHH
T ss_pred HH--------------Hc-cCCCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHH
Confidence 10 00 023589999999877753 22 343432 111110
Q ss_pred -----------------------------------------c----c-cc---------------cchHHHHHHHHHHHH
Q 004775 204 -----------------------------------------V----G-LG---------------NGLHSLQVQIAMRGI 222 (731)
Q Consensus 204 -----------------------------------------~----~-~~---------------~~L~~lQ~~IL~rAl 222 (731)
+ . .. ..|..+ ...|..|.
T Consensus 150 I~~~yGee~~a~~IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~L-~~~L~~a~ 228 (310)
T PF01795_consen 150 IFREYGEEKFARRIARAIVEARKKKPITTTKELAEIIEKAVPKKRRRRKIHPATRVFQALRIAVNDELEEL-ERGLEAAP 228 (310)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHSS--BHHHHHHHHHHHS-HHHCC-SS-TTHHHHHHHHHHHCTHHHHH-HHHHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCcccccccCCHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 0 0 00 011222 45688899
Q ss_pred hhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcc
Q 004775 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRI 300 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~ 300 (731)
.+|+|||+|+.- |++..|+- +|..+++...... .++..+|... ......|+...+....+|.+|+..+.|+
T Consensus 229 ~~L~~gGrl~VI--SFHSLEDR-iVK~~f~~~~~~~---~~p~~lp~~~-~~~~~~~~~i~kk~i~ps~~Ei~~NpRs 299 (310)
T PF01795_consen 229 DLLKPGGRLVVI--SFHSLEDR-IVKQFFRELAKSC---KCPPGLPVCE-CGKHPKFKLITKKPITPSEEEIEENPRS 299 (310)
T ss_dssp HHEEEEEEEEEE--ESSHHHHH-HHHHHHHCCSSC----------------------EESESS-B---HHHHHH-GGG
T ss_pred HHhcCCcEEEEE--EecchhhH-HHHHHHHHhcccC---CCcccccccc-cccccceEEccCCccCCChhhhhcCCch
Confidence 999999999875 67777865 5577787654322 2223344221 1223447777766777888888877664
No 156
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.01 E-value=2.9e-05 Score=81.71 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=89.9
Q ss_pred ccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEe
Q 004775 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTN 143 (731)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~ 143 (731)
....+...++......+||+++.+.|.-|+.+|..+. +.|.|+++|.++.+...++.++++.|. .++.+..
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~--------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP--------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 3334445555566677999999999999999998864 368999999999999999999999996 5688888
Q ss_pred cccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004775 144 HEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (731)
Q Consensus 144 ~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (731)
++|... +.+. ........||.|++|+- .......+..++
T Consensus 138 G~a~e~L~~l~---------------~~~~~~~~fD~iFiDad-------------------------K~~Y~~y~~~~l 177 (247)
T PLN02589 138 GPALPVLDQMI---------------EDGKYHGTFDFIFVDAD-------------------------KDNYINYHKRLI 177 (247)
T ss_pred ccHHHHHHHHH---------------hccccCCcccEEEecCC-------------------------HHHhHHHHHHHH
Confidence 888663 2110 00001257999999874 112245567778
Q ss_pred hhccCCCEEEEE
Q 004775 223 SLLKVGGRIVYS 234 (731)
Q Consensus 223 ~lLKpGG~LVYS 234 (731)
++|++||.||.=
T Consensus 178 ~ll~~GGviv~D 189 (247)
T PLN02589 178 DLVKVGGVIGYD 189 (247)
T ss_pred HhcCCCeEEEEc
Confidence 999999999863
No 157
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.98 E-value=3.4e-06 Score=75.10 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=58.5
Q ss_pred EeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCC
Q 004775 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (731)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~ 162 (731)
||++||+|..+..+++.. +.+.++++|+|+..+..+++++...+..+......+......
T Consensus 1 LdiGcG~G~~~~~l~~~~---------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~----------- 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD----------- 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS--------------
T ss_pred CEeCccChHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh-----------
Confidence 799999999999998875 358999999999999888888877765444443333222110
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 163 ~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
......||.|++= +++. .+ .....+|+++.++|||||+|
T Consensus 61 --------~~~~~~fD~V~~~------~vl~---------------~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 61 --------YDPPESFDLVVAS------NVLH---------------HL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------CCC----SEEEEE-------TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred --------cccccccceehhh------hhHh---------------hh-hhHHHHHHHHHHHcCCCCCC
Confidence 0111589999961 1211 11 22247899999999999986
No 158
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.98 E-value=2.6e-05 Score=82.68 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||++||+|..+..++..+... ....|+++|+|+..+..+..+ .+++.+...|+..+|-
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~------~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~----- 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI------TTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPF----- 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc------cCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCC-----
Confidence 456789999999999999998875421 123799999999988877543 2456677777766541
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|++-- .+. .+....+.|||||+++..+
T Consensus 148 ----------------~~~sfD~I~~~~------------------~~~-----------~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 148 ----------------ADQSLDAIIRIY------------------APC-----------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred ----------------cCCceeEEEEec------------------CCC-----------CHHHHHhhccCCCEEEEEe
Confidence 136799998510 010 1234567899999999875
No 159
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.97 E-value=1.9e-05 Score=83.40 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=65.1
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++++|||+|||+|..|..+++. ...|+|+|+|+..+..+.++++. .+++.+++.|+..++-
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~-----------~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKR-----------AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL- 89 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-
Confidence 456788999999999999999999876 25899999999999999887754 4678999999876431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCS 187 (731)
..||.|++.+|..
T Consensus 90 ----------------------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 ----------------------PEFNKVVSNLPYQ 102 (258)
T ss_pred ----------------------hhceEEEEcCCcc
Confidence 3479999999964
No 160
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=0.00018 Score=77.11 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=123.2
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+|++.|+...||..-|-||.|..+++.+.. .|.++|+|.|+..++.++..++.++ .++.+++....++..
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~--------~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~ 87 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPD--------LGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAE 87 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCC--------CCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHH
Confidence 3578999999999999999999999998753 6899999999999999999887766 567777765544322
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCC--------------Cc--cccChh-------hhhhcc-----
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD--------------GT--LRKAPD-------IWRKWN----- 203 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd--------------Gt--lrk~pd-------~~~~w~----- 203 (731)
.. ......+||-||.|---|+- |- ||-+++ +...|+
T Consensus 88 ~l----------------~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~ 151 (314)
T COG0275 88 AL----------------KELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLA 151 (314)
T ss_pred HH----------------HhcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHH
Confidence 10 00113578999988654432 22 233321 111121
Q ss_pred ------------------------------------------ccc--ccchH-----------------HHHHHHHHHHH
Q 004775 204 ------------------------------------------VGL--GNGLH-----------------SLQVQIAMRGI 222 (731)
Q Consensus 204 ------------------------------------------~~~--~~~L~-----------------~lQ~~IL~rAl 222 (731)
|.. ....| ..-.+.|..|.
T Consensus 152 ~I~~~yGEEr~arrIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~~a~ 231 (314)
T COG0275 152 RIFKEYGEERFAKRIARAIVERRKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAAL 231 (314)
T ss_pred HHHHHhccHhhHHHHHHHHHHHhccCCCccHHHHHHHHHHhCCchhcccCCCcchhhhhhheeeehhHHHHHHHHHHHHH
Confidence 100 00011 11245788999
Q ss_pred hhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCccc-ceeccCCccccchhhhhhhhc
Q 004775 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRK-WKVRDKGIWLASHKHVRKFRR 299 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~-W~v~~~~~~~~~~~~~~~~~~ 299 (731)
.+|+|||+|+.- |++..|+ -.|..+++++.. ..++..+|-. .+|-.. .+...+....+|.+|+..+-|
T Consensus 232 ~~L~~gGRl~VI--sFHSLED-RiVK~ff~~~s~----~~~p~~lP~~--~~~~~~~~~~itkK~i~ps~~Ei~~NpR 300 (314)
T COG0275 232 DLLKPGGRLAVI--SFHSLED-RIVKNFFKELSK----PGVPKGLPVT--EEGPALKFKLITKKPIMPSEEEIEANPR 300 (314)
T ss_pred HhhCCCcEEEEE--EecchHH-HHHHHHHHHhcc----cCCCCCCCcc--cccccchhhhccCCCcCCCHHHHHhCcc
Confidence 999999998754 3444464 567888887643 5556667732 233122 244445556778888876654
No 161
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.95 E-value=9.6e-06 Score=81.03 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=81.2
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
+.+.|++||+|-.+..+|.. .-+|+|++.|++|...+.+|++-.|..|+.++++||..+.-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-----------A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-------- 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-----------AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-------- 94 (252)
T ss_pred hceeeccCCcchHHHHHHhh-----------hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--------
Confidence 78999999999988887765 46899999999999999999988888999999999988631
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...|.|+|..= +..-+..-|...+.+++++||..++++
T Consensus 95 ---------------e~ADvvicEml--------------------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ---------------ENADVVICEML--------------------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ---------------cccceeHHHHh--------------------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 45789988321 112234568899999999999988875
No 162
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.93 E-value=9e-05 Score=75.24 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=73.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+.-+..++||++||.|.-+..||+. .-.|+|+|.|+..++.+.+.+.+.+++ +.+...|...+.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~-----------G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ-----------GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD---- 90 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT-----------T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS----
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc----
Confidence 3345669999999999999999885 347999999999999998888887776 666666654431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
. ...||.|++.+ ++..-+ .....+|+....+.++|||++++.
T Consensus 91 -----------------~-~~~yD~I~st~------v~~fL~--------------~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 91 -----------------F-PEEYDFIVSTV------VFMFLQ--------------RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -------------------TTTEEEEEEES------SGGGS---------------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------c-cCCcCEEEEEE------EeccCC--------------HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 1 25799998632 111100 011235677778899999999985
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
|
T Consensus 133 ~ 133 (192)
T PF03848_consen 133 T 133 (192)
T ss_dssp E
T ss_pred E
Confidence 4
No 163
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.92 E-value=6.4e-05 Score=77.41 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH------------HcCCCceEEEec
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK------------RMCTANLIVTNH 144 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k------------Rlg~~ni~vt~~ 144 (731)
.++.+|||++||.|--+..||+. .-.|+|+|+|+..++.+..... +....++.+...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-----------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-----------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 56789999999999999999874 2479999999999997633211 001124556666
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
|...++.. ....||.|+--. .+-. .| ....+.+.+..+
T Consensus 102 D~~~~~~~--------------------~~~~fD~i~D~~------~~~~l~~---------------~~R~~~~~~l~~ 140 (213)
T TIGR03840 102 DFFALTAA--------------------DLGPVDAVYDRA------ALIALPE---------------EMRQRYAAHLLA 140 (213)
T ss_pred cCCCCCcc--------------------cCCCcCEEEech------hhccCCH---------------HHHHHHHHHHHH
Confidence 66554310 014578776311 1100 11 223457888899
Q ss_pred hccCCCEEEEEeCCC
Q 004775 224 LLKVGGRIVYSTCSM 238 (731)
Q Consensus 224 lLKpGG~LVYSTCSl 238 (731)
+|||||++++.|-+.
T Consensus 141 lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 141 LLPPGARQLLITLDY 155 (213)
T ss_pred HcCCCCeEEEEEEEc
Confidence 999999988876655
No 164
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.92 E-value=2.7e-05 Score=83.93 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=69.4
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~fp 150 (731)
..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++...+ ..++.+++.|+..++
T Consensus 30 ~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-----------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 30 EKAAIKPTDTVLEIGPGTGNLTEKLLQL-----------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HhcCCCCcCEEEEecCchHHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3457789999999999999999998775 3579999999999999999988766 568999999986632
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
...||+|+++.|....
T Consensus 99 -----------------------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -----------------------FPYFDVCVANVPYQIS 114 (294)
T ss_pred -----------------------ccccCEEEecCCcccC
Confidence 1358999999996543
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.89 E-value=5.2e-05 Score=78.86 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=94.8
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
-.+|++|+|-|..++++|.. .|.--++|+|+....+..+...+.+.+++|+.++++||..+....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~---------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~------ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK---------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL------ 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH---------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc------
Confidence 48999999999999999886 366789999999999999999999999999999999998753211
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCC
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~ 239 (731)
...++.|+|.+-=| |-|.+ ..-..---+|...|....+.||+||.|.+.|
T Consensus 115 ------------~~~~sl~~I~i~FP-----------DPWpK---kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT---- 164 (227)
T COG0220 115 ------------IPDGSLDKIYINFP-----------DPWPK---KRHHKRRLTQPEFLKLYARKLKPGGVLHFAT---- 164 (227)
T ss_pred ------------CCCCCeeEEEEECC-----------CCCCC---ccccccccCCHHHHHHHHHHccCCCEEEEEe----
Confidence 12247899988655 44543 2211112257788999999999999999987
Q ss_pred CcCcHHHHHH
Q 004775 240 PVENEAVVAE 249 (731)
Q Consensus 240 p~ENEaVV~~ 249 (731)
.++.....
T Consensus 165 --D~~~y~e~ 172 (227)
T COG0220 165 --DNEEYFEW 172 (227)
T ss_pred --cCHHHHHH
Confidence 45555555
No 166
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.88 E-value=0.00023 Score=77.59 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=40.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
++.+|||+|||+|..+..++.. ...|+|+|+++..+..++++++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-----------g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-----------GAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhc
Confidence 5789999999999999888764 258999999999999999988765
No 167
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.87 E-value=0.00012 Score=77.84 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCCEEEeeccCcch----HHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH---H-cCC------------
Q 004775 77 QPDHFVLDMCAAPGS----KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK---R-MCT------------ 136 (731)
Q Consensus 77 ~pg~~VLDmCAAPGs----KT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k---R-lg~------------ 136 (731)
.++.+|||+|||+|- .+..+++.+... ..+...|+|.|+|+..++.+++.+- . -+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKA----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhc----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 456799999999996 444455543310 0124799999999999998876431 0 011
Q ss_pred -----------CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004775 137 -----------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (731)
Q Consensus 137 -----------~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~ 205 (731)
.++.+..+|....+ .....||.|+| . . +..-+
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~---------------------~~~~~fD~I~c----r--n-------vl~yf--- 216 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAES---------------------PPLGDFDLIFC----R--N-------VLIYF--- 216 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCC---------------------CccCCCCEEEe----c--h-------hHHhC---
Confidence 13445555544321 12368999997 1 1 11111
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
-...+.+++.+..+.|+|||+|+..
T Consensus 217 ----~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 217 ----DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ----CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1245678999999999999999986
No 168
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.87 E-value=6.3e-05 Score=75.10 Aligned_cols=114 Identities=25% Similarity=0.276 Sum_probs=78.0
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~~~ 158 (731)
++|||++||-|....+|++-= -.+.++++|-+++.+.++.+.+.|.+.+| |.+-..|... |
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg---------f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~-------- 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG---------FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-P-------- 130 (227)
T ss_pred cceeeccCCchHHHHHHHHhc---------CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-C--------
Confidence 399999999999888877641 24679999999999999999999999887 7776666543 1
Q ss_pred CCCCccccccccccccccccEEEe----cC-CCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 159 SSASDKGIESESNMGQLLFDRVLC----DV-PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~----D~-PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.....+||+||= |+ .-|+++.-.| + .--+...-++|+|||++|.
T Consensus 131 ------------~~~~~qfdlvlDKGT~DAisLs~d~~~~r---------------~----~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 131 ------------DFLSGQFDLVLDKGTLDAISLSPDGPVGR---------------L----VVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred ------------cccccceeEEeecCceeeeecCCCCcccc---------------e----eeehhhHhhccCCCcEEEE
Confidence 122367777762 21 1122222110 0 1124555678999999999
Q ss_pred EeCCCCCcC
Q 004775 234 STCSMNPVE 242 (731)
Q Consensus 234 STCSl~p~E 242 (731)
++|-+...|
T Consensus 180 tSCN~T~dE 188 (227)
T KOG1271|consen 180 TSCNFTKDE 188 (227)
T ss_pred EecCccHHH
Confidence 999885433
No 169
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.87 E-value=2e-05 Score=80.95 Aligned_cols=131 Identities=24% Similarity=0.312 Sum_probs=75.8
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
.+|+|+|||||||+..|.+.|.............|||+|+.+- ..++.++....|.+.-.....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~----- 106 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEA----- 106 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHH-----
Confidence 5899999999999999999887632211111225999998332 235677777777765221100
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHH----hhccCCCEEEEE
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGI----SLLKVGGRIVYS 234 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L-~~lQ~~IL~rAl----~lLKpGG~LVYS 234 (731)
. -..+...+.|.|+||..---+|. +.+ .-.|.+||..|+ ..||+||.+|-
T Consensus 107 ------I--i~hfggekAdlVvcDGAPDvTGl----------------Hd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa- 161 (294)
T KOG1099|consen 107 ------I--IEHFGGEKADLVVCDGAPDVTGL----------------HDLDEYVQAQLLLAALNIATCVLKPGGSFVA- 161 (294)
T ss_pred ------H--HHHhCCCCccEEEeCCCCCcccc----------------ccHHHHHHHHHHHHHHHHHhheecCCCeeeh-
Confidence 0 01123468899999853222221 111 124666666655 57999999873
Q ss_pred eCCCCCcCcHHHHHHHHHH
Q 004775 235 TCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~ 253 (731)
-+..-++-..+..-|+.
T Consensus 162 --KifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 162 --KIFRGRDTSLLYSQLRK 178 (294)
T ss_pred --hhhccCchHHHHHHHHH
Confidence 23344444444444444
No 170
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.85 E-value=3.4e-05 Score=80.88 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=68.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--c----eEEEecccccCCCc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--N----LIVTNHEAQHFPGC 152 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--n----i~vt~~Da~~fp~~ 152 (731)
|.+|||++||.|-.|.+||.+ ...|+|+|++.+.++.++...+..... + +.....++.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-----------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E----- 153 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-----------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE----- 153 (282)
T ss_pred CceEEEeccCccccchhhHhh-----------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh-----
Confidence 688999999999999999886 468999999999999998873322211 1 111111111
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.....||.|+| | ++.. .. ..-..++....++|||||+|+
T Consensus 154 -------------------~~~~~fDaVvc----s---------evle--------HV-~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 154 -------------------GLTGKFDAVVC----S---------EVLE--------HV-KDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred -------------------hcccccceeee----H---------HHHH--------HH-hCHHHHHHHHHHHhCCCCceE
Confidence 11256999997 1 1111 11 113468889999999999999
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
.||
T Consensus 193 itt 195 (282)
T KOG1270|consen 193 ITT 195 (282)
T ss_pred eee
Confidence 996
No 171
>PLN02366 spermidine synthase
Probab=97.78 E-value=0.00033 Score=76.15 Aligned_cols=111 Identities=10% Similarity=0.045 Sum_probs=78.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~ 152 (731)
....+||++++|.|+.+..++.. . +-..|+.+|+|+.-++.+++.+... .-+++.++..|+..|-.-
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~--~-------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH--S-------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC--C-------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh
Confidence 34679999999999987777543 1 1368999999999999988876543 235789999998765210
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.....||+|++|.+-. .| + ..+-...+.++.+.+.|+|||.+|
T Consensus 161 -------------------~~~~~yDvIi~D~~dp-~~-------------~----~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 161 -------------------APEGTYDAIIVDSSDP-VG-------------P----AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred -------------------ccCCCCCEEEEcCCCC-CC-------------c----hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 0125799999998521 11 1 111234567888999999999987
Q ss_pred E
Q 004775 233 Y 233 (731)
Q Consensus 233 Y 233 (731)
.
T Consensus 204 ~ 204 (308)
T PLN02366 204 T 204 (308)
T ss_pred E
Confidence 4
No 172
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.76 E-value=0.00015 Score=84.12 Aligned_cols=159 Identities=12% Similarity=0.053 Sum_probs=92.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+.+|||.|||.|+..+.++..+...... ..-.-.++|+|+|+..+..+..++..++...+.+.+.|........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~---- 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN---- 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc----
Confidence 45699999999999999999887531100 0012478999999999999999988776323344444432211000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccC------------hhhhh---hccc-----cc---c-cchHHH
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA------------PDIWR---KWNV-----GL---G-NGLHSL 213 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~------------pd~~~---~w~~-----~~---~-~~L~~l 213 (731)
.......||.|+..||.......++. ++.+. .|.. .. . .+...+
T Consensus 106 ------------~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 173 (524)
T TIGR02987 106 ------------IESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTE 173 (524)
T ss_pred ------------cccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccH
Confidence 00112579999999998765432211 11110 0100 00 0 122234
Q ss_pred HHHH-HHHHHhhccCCCEEEEEeCC-CCCcCcHHHHHHHHHH
Q 004775 214 QVQI-AMRGISLLKVGGRIVYSTCS-MNPVENEAVVAEILRK 253 (731)
Q Consensus 214 Q~~I-L~rAl~lLKpGG~LVYSTCS-l~p~ENEaVV~~~L~~ 253 (731)
...+ +.+++++|++||++.+.+=+ +........+.+.|-+
T Consensus 174 y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~ 215 (524)
T TIGR02987 174 YSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFN 215 (524)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 4444 46899999999999987554 3233444455555544
No 173
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.00018 Score=74.33 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=101.3
Q ss_pred cchhhHHHHHHHhhccc-ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE
Q 004775 39 RKNQTLERFHKFLKLEN-EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117 (731)
Q Consensus 39 rk~~~l~~~~~~l~~~~-~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn 117 (731)
|..+.++++.++..... .......=.....+...++..-...++||++.-+|.-++..|..|.. .|+|+|+
T Consensus 33 ~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~--------dGrv~a~ 104 (237)
T KOG1663|consen 33 REPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPE--------DGRVVAI 104 (237)
T ss_pred CCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCC--------CceEEEE
Confidence 34456667776643221 11222223334445555666667889999999999988888888764 7999999
Q ss_pred eCCHHHHHHHHHHHHHcCCCc-eEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC
Q 004775 118 DLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (731)
Q Consensus 118 Did~~R~~~L~~n~kRlg~~n-i~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~ 195 (731)
|+|..-.+......+..|+.. +.+..++|..- +.+. .+.+...||.+++|+=
T Consensus 105 eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~----------------~~~~~~tfDfaFvDad---------- 158 (237)
T KOG1663|consen 105 EIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELL----------------ADGESGTFDFAFVDAD---------- 158 (237)
T ss_pred ecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHH----------------hcCCCCceeEEEEccc----------
Confidence 999999999988888888754 66666666541 1110 1123578999999872
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 196 PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 196 pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
+. .......++++|+|+||.|+|=
T Consensus 159 ----K~-----------nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 159 ----KD-----------NYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ----hH-----------HHHHHHHHHHhhcccccEEEEe
Confidence 21 1225688999999999999986
No 174
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.74 E-value=8.3e-05 Score=76.11 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=78.0
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.+-.+|.|++||||.-|.+|++.. |...|+++|.|+.+++.+..+ .+++.+...|...+-
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~Rw---------P~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~---- 88 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRW---------PDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWK---- 88 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhC---------CCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcC----
Confidence 34567899999999999999999885 568999999999998877443 366777777777652
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....+|+|+.++- -.|-+.. .++|.|-+..|.|||.|..-
T Consensus 89 ------------------p~~~~dllfaNAv--------------lqWlpdH--------~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 89 ------------------PEQPTDLLFANAV--------------LQWLPDH--------PELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred ------------------CCCccchhhhhhh--------------hhhcccc--------HHHHHHHHHhhCCCceEEEE
Confidence 1256888887553 2455544 46788899999999998754
No 175
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.71 E-value=5.2e-05 Score=81.90 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=94.0
Q ss_pred CcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHH-------HHHHH
Q 004775 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN-------LLIHQ 130 (731)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~-------~L~~n 130 (731)
|+-+---.-|.+-+-..-++||+.|+|=+.|+||.-...|.- .+.|++-|+|...++ -.+.|
T Consensus 188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F-----------Ga~viGtDIDyr~vragrg~~~si~aN 256 (421)
T KOG2671|consen 188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF-----------GAYVIGTDIDYRTVRAGRGEDESIKAN 256 (421)
T ss_pred CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh-----------cceeeccccchheeecccCCCcchhHh
Confidence 443333335556666677899999999999999976555443 579999999988766 45677
Q ss_pred HHHcCCCc--eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC----h-----hhh
Q 004775 131 TKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA----P-----DIW 199 (731)
Q Consensus 131 ~kRlg~~n--i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~----p-----d~~ 199 (731)
.+..|+.. +-+..+|..+-| + .....||.|+||||..--.-.||. + +..
T Consensus 257 FkQYg~~~~fldvl~~D~sn~~-~-------------------rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~ 316 (421)
T KOG2671|consen 257 FKQYGSSSQFLDVLTADFSNPP-L-------------------RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESS 316 (421)
T ss_pred HHHhCCcchhhheeeecccCcc-h-------------------hhcceeeEEEeCCCcchhhhhhhhcccCcccCccccc
Confidence 88888532 445556655422 1 124789999999996321111211 0 000
Q ss_pred -hh-cccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 200 -RK-WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 200 -~~-w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.. ........+..+-..+|.-+.+.|.-||++|+
T Consensus 317 ~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 317 RGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred ccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 00 11122345666778889999999999999984
No 176
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.70 E-value=0.00035 Score=71.38 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 145 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~D 145 (731)
..++.+|||+|||+|..+..++.. ...|+++|+++..+..++.+....+. .++.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-----------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 357889999999999998888764 24599999999999999998877765 456666665
No 177
>PRK10742 putative methyltransferase; Provisional
Probab=97.67 E-value=0.00012 Score=76.87 Aligned_cols=87 Identities=16% Similarity=-0.000 Sum_probs=69.6
Q ss_pred chhhhcCCCCCC--EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc------CC---C
Q 004775 69 VPPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------CT---A 137 (731)
Q Consensus 69 lp~llLd~~pg~--~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl------g~---~ 137 (731)
..+.++.+++|. +|||++||.|.-++.++.. .+.|+++|.++.-+.+|.++++++ +. .
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-----------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ 145 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE 145 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhc
Confidence 445677888998 9999999999999988765 356999999999999999999986 32 4
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 138 ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
++.+.+.|+..|..- ....||+|.+|||.
T Consensus 146 ri~l~~~da~~~L~~--------------------~~~~fDVVYlDPMf 174 (250)
T PRK10742 146 RLQLIHASSLTALTD--------------------ITPRPQVVYLDPMF 174 (250)
T ss_pred eEEEEeCcHHHHHhh--------------------CCCCCcEEEECCCC
Confidence 678888887765320 11369999999994
No 178
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.65 E-value=0.00091 Score=77.10 Aligned_cols=175 Identities=16% Similarity=0.137 Sum_probs=113.4
Q ss_pred CcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
|.++--..++-+.+.+|.+++..+|+|-|||+||.-++.++.+.... ....+++.|++.....+.+-|+--.|..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 88777777777888888999999999999999999999999886421 0378999999999999988888766665
Q ss_pred -ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC---hhhhhhcccccccchHHH
Q 004775 138 -NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA---PDIWRKWNVGLGNGLHSL 213 (731)
Q Consensus 138 -ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~---pd~~~~w~~~~~~~L~~l 213 (731)
++.+..+|...-|... .......||.|+..||-|++|...-. ..-|+.........-..-
T Consensus 241 ~~~~i~~~dtl~~~~~~----------------~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
T COG0286 241 GDANIRHGDTLSNPKHD----------------DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA 304 (489)
T ss_pred ccccccccccccCCccc----------------ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch
Confidence 2333333332211100 01233689999999999977664321 111211111111111111
Q ss_pred HHHHHHHHHhhccCCCEEE--EEeCCCCCcCcHHHHHHHHHH
Q 004775 214 QVQIAMRGISLLKVGGRIV--YSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LV--YSTCSl~p~ENEaVV~~~L~~ 253 (731)
-..-+.+.+..|+|||+.. ...-.+...-+|..|...|-.
T Consensus 305 ~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 305 DLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 1456778889999977543 223334444478888888865
No 179
>PLN02823 spermine synthase
Probab=97.63 E-value=0.00045 Score=75.92 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=85.9
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecc
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHE 145 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~D 145 (731)
|+++..+.| .+||-++.|-|+-+..++..- +...|+++|+|+.-++++++.+... .-+++.++..|
T Consensus 96 ~~l~~~~~p-k~VLiiGgG~G~~~re~l~~~---------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 96 PALLHHPNP-KTVFIMGGGEGSTAREVLRHK---------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred HHHhhCCCC-CEEEEECCCchHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 444444433 589999999998777665421 2468999999999999998876432 23678899999
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCC-CCCccccChhhhhhcccccccchHHHHHHHHH-HHHh
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS-GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM-RGIS 223 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCS-GdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~-rAl~ 223 (731)
+..|-. ....+||+|++|++=. ..|. . .+-...+.++ .+.+
T Consensus 166 a~~~L~--------------------~~~~~yDvIi~D~~dp~~~~~---------------~--~~Lyt~eF~~~~~~~ 208 (336)
T PLN02823 166 ARAELE--------------------KRDEKFDVIIGDLADPVEGGP---------------C--YQLYTKSFYERIVKP 208 (336)
T ss_pred hHHHHh--------------------hCCCCccEEEecCCCccccCc---------------c--hhhccHHHHHHHHHH
Confidence 887631 1125799999997410 0010 0 0112234555 6678
Q ss_pred hccCCCEEEEEeCCCCCcCcHHHHHHHHH
Q 004775 224 LLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 224 lLKpGG~LVYSTCSl~p~ENEaVV~~~L~ 252 (731)
.|++||.+|.-.-|.....+...+..+++
T Consensus 209 ~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~ 237 (336)
T PLN02823 209 KLNPGGIFVTQAGPAGILTHKEVFSSIYN 237 (336)
T ss_pred hcCCCcEEEEeccCcchhccHHHHHHHHH
Confidence 99999998765434333334444444444
No 180
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.63 E-value=0.00014 Score=77.54 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=62.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+.+++. .+++.++++|+..++.-
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt~~L~~~-----------~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALTEPLLER-----------AAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLS 102 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHH
Confidence 457789999999999999999999876 2489999999999999887653 26789999998775310
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
...+|+|++.+|.
T Consensus 103 ---------------------~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ---------------------ELQPLKVVANLPY 115 (272)
T ss_pred ---------------------HcCcceEEEeCCc
Confidence 0116899999984
No 181
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.61 E-value=0.00032 Score=76.98 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=78.5
Q ss_pred hHHHHHHHhhcccccCcEEecCccccchhhhcC----CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEe
Q 004775 43 TLERFHKFLKLENEIGNITRQEAVSMVPPLFLD----VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (731)
Q Consensus 43 ~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd----~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (731)
.|..|++|++ |+|.-.++. -.++.+|||||||=||=..=... . ..+.++++|
T Consensus 37 ~lR~fNNwvK--------------s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~---~-------~i~~~vg~D 92 (331)
T PF03291_consen 37 HLRNFNNWVK--------------SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK---A-------KIKHYVGID 92 (331)
T ss_dssp HHHHHHHHHH--------------HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH---T-------T-SEEEEEE
T ss_pred HHHHHhHHHH--------------HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh---c-------CCCEEEEEe
Confidence 5778999876 222222221 12899999999999985443322 2 257999999
Q ss_pred CCHHHHHHHHHHHHHcCC----------CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 119 LDVQRCNLLIHQTKRMCT----------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 119 id~~R~~~L~~n~kRlg~----------~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
++..-++.++++.+.+.. -...+...|...-. +.. ........||+|=|=
T Consensus 93 is~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~---l~~------------~~~~~~~~FDvVScQ----- 152 (331)
T PF03291_consen 93 ISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES---LRE------------KLPPRSRKFDVVSCQ----- 152 (331)
T ss_dssp S-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH---HHC------------TSSSTTS-EEEEEEE-----
T ss_pred CCHHHHHHHHHHHHHhccccccccccccchhheeccccccch---hhh------------hccccCCCcceeehH-----
Confidence 999999999888743321 11233444443210 000 001113589999761
Q ss_pred CCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 189 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 189 dGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
....-...-...-+.+|.++..+|+|||+++-+|-+-
T Consensus 153 -------------FalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 153 -------------FALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp -------------S-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred -------------HHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 1111111112233558999999999999999987543
No 182
>PRK06202 hypothetical protein; Provisional
Probab=97.60 E-value=0.00038 Score=71.90 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+...++.+|||+|||+|..+..|+..+... .+...|+|+|+++..+..++.+.... ++.+...++..++.
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~-----g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~-- 125 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRD-----GLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA-- 125 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhC-----CCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc--
Confidence 344677899999999999999988765421 12458999999999998887654322 34444444433321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...+||.|++- .++.+-++. .-.++|+.+.++++ |.++.
T Consensus 126 -------------------~~~~fD~V~~~------~~lhh~~d~--------------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 126 -------------------EGERFDVVTSN------HFLHHLDDA--------------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred -------------------cCCCccEEEEC------CeeecCChH--------------HHHHHHHHHHHhcC--eeEEE
Confidence 12679999972 122211110 12467888888887 45554
Q ss_pred E
Q 004775 234 S 234 (731)
Q Consensus 234 S 234 (731)
.
T Consensus 165 ~ 165 (232)
T PRK06202 165 N 165 (232)
T ss_pred e
Confidence 3
No 183
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00014 Score=82.46 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=82.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~-fp~ 151 (731)
.+++.++..+||+|||+|...+.+|.. .+.|+++++++..+.-+..|++.+|..|..++.+.|.. |+.
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~-----------~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARG-----------VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS 446 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcc-----------ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccch
Confidence 457778899999999999988877653 68999999999999999999999999999999886654 333
Q ss_pred cccCCCCCCCCcccccccccccccccc-EEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFD-RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FD-rIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
+.- .. ...=+ ++++|||-.| +|..-. .+++-.+.--+
T Consensus 447 l~~-~~----------------~~~~~~v~iiDPpR~G---------------------lh~~~i----k~l~~~~~~~r 484 (534)
T KOG2187|consen 447 LLT-PC----------------CDSETLVAIIDPPRKG---------------------LHMKVI----KALRAYKNPRR 484 (534)
T ss_pred hcc-cC----------------CCCCceEEEECCCccc---------------------ccHHHH----HHHHhccCccc
Confidence 211 00 01234 7788999433 333322 23333443378
Q ss_pred EEEEeCCCC
Q 004775 231 IVYSTCSMN 239 (731)
Q Consensus 231 LVYSTCSl~ 239 (731)
+||.+|..+
T Consensus 485 lvyvSCn~~ 493 (534)
T KOG2187|consen 485 LVYVSCNPH 493 (534)
T ss_pred eEEEEcCHH
Confidence 999999983
No 184
>PRK05785 hypothetical protein; Provisional
Probab=97.58 E-value=0.00038 Score=72.24 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=63.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+++.. .+.|+|+|.|+..++.++... ...+.|+..+|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~----------~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp------ 105 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF----------KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALP------ 105 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc----------CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCC------
Confidence 357899999999999988887753 268999999999998765421 12455665543
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
....+||.|++ +. +++.-++ ..+.|+...+.|||++
T Consensus 106 ---------------~~d~sfD~v~~-----~~-~l~~~~d----------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 ---------------FRDKSFDVVMS-----SF-ALHASDN----------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---------------CCCCCEEEEEe-----cC-hhhccCC----------------HHHHHHHHHHHhcCce
Confidence 22368999997 11 2221111 2457888889999843
No 185
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.58 E-value=0.00078 Score=73.61 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=90.7
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC-ceEEEe-cccccCCCccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTN-HEAQHFPGCRA 154 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~-ni~vt~-~Da~~fp~~~~ 154 (731)
++.+|||+|||.|.....|+... +...++|+|+|+..+..+++|++++ +.. .+.+.. .+...+..-
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~---------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-- 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE---------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-- 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC---------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc--
Confidence 56899999999998877776653 2468999999999999999999998 665 455532 232221100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCcccc--Chhhhh--------------------hcccccccchHH
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK--APDIWR--------------------KWNVGLGNGLHS 212 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk--~pd~~~--------------------~w~~~~~~~L~~ 212 (731)
.......||.|+|.||.-.++.-.. .+..++ .|.++.- ..
T Consensus 183 ---------------i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe---~~ 244 (321)
T PRK11727 183 ---------------IIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGE---VA 244 (321)
T ss_pred ---------------ccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcE---ee
Confidence 0012358999999999765543210 000111 1211111 12
Q ss_pred HHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC-cEEEEec
Q 004775 213 LQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDV 263 (731)
Q Consensus 213 lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g-~~elvd~ 263 (731)
+-.+++..+..+++..|.. ||=+...+|-..|...|++.+- .+..++.
T Consensus 245 fi~~mi~eS~~~~~~~gwf---tsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 245 FIKRMIEESKAFAKQVLWF---TSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eehHhhHHHHHHHhhCcEE---EEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 3344555555555554422 3444555667777777776653 3445444
No 186
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.58 E-value=4.6e-05 Score=87.19 Aligned_cols=131 Identities=20% Similarity=0.240 Sum_probs=76.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+++++.|||+|||||+|...+++.|.. .+.||++|+-+-+ ..+++.....|... ..++..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv--------~slivGvDl~pik-----------p~~~c~t~v~dItt-d~cr~~ 101 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPV--------GSLIVGVDLVPIK-----------PIPNCDTLVEDITT-DECRSK 101 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCC--------CceEEEeeeeecc-----------cCCccchhhhhhhH-HHHHHH
Confidence 478999999999999998888887753 6899999985432 22333332222221 000000
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.......-+.|+||.|..-+-.| .|. .++.....|-++.|+-|..+|..||.+|-=
T Consensus 102 ------------l~k~l~t~~advVLhDgapnVg~----------~w~-~DA~~q~~L~l~al~LA~~~l~~~g~fvtk- 157 (780)
T KOG1098|consen 102 ------------LRKILKTWKADVVLHDGAPNVGG----------NWV-QDAFQQACLTLRALKLATEFLAKGGTFVTK- 157 (780)
T ss_pred ------------HHHHHHhCCCcEEeecCCCccch----------hHH-HHHHHhhHHHHHHHHHHHHHHHhcCccccc-
Confidence 00011124569999986422222 232 233444556677788899999999996633
Q ss_pred CCCCCcCcHHHHHHHHH
Q 004775 236 CSMNPVENEAVVAEILR 252 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~ 252 (731)
+.+.+.-.-+.+++.
T Consensus 158 --vfrs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 158 --VFRSEDYNGLLRVFG 172 (780)
T ss_pred --cccCCcchHHHHHHH
Confidence 334444444444443
No 187
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.001 Score=67.68 Aligned_cols=137 Identities=22% Similarity=0.299 Sum_probs=98.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+++|++||=++||+|...+|++...+ .|.|+|++.++.-..-|...+++ -+|+..+..||.. |.-.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~---------~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~-P~~Y- 139 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG---------EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK-PEKY- 139 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC---------CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC-cHHh-
Confidence 478999999999999999999999864 59999999999988888777754 3688888888875 3211
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH-HHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL-~rAl~lLKpGG~LVY 233 (731)
..--..+|+|.+|+. ...|.+|+ .+|-.+||.||.++.
T Consensus 140 ----------------~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 140 ----------------RHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred ----------------hhhcccccEEEEecC-------------------------CchHHHHHHHHHHHhcccCCeEEE
Confidence 011257999999985 13455554 567889999996655
Q ss_pred E--eCCCCCcCcH-HHHHHHHHHC-CCcEEEEecCc
Q 004775 234 S--TCSMNPVENE-AVVAEILRKC-EGSVELVDVSN 265 (731)
Q Consensus 234 S--TCSl~p~ENE-aVV~~~L~~~-~g~~elvd~s~ 265 (731)
+ +-|+...+.. +|-..-+++. .+.|++++.-+
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeEEec
Confidence 4 6677665555 4544344432 24577766643
No 188
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.54 E-value=0.00038 Score=71.17 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.++.+|||+|||+|..+..|++.+. .+.|+|+|+|+..+..++++. +++.+.+.|+..
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~---------~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP---------FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 456788999999999999999877642 468999999999999887653 334555555543
No 189
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.52 E-value=0.00081 Score=69.56 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=69.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH------------HcCCCceEEEe
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK------------RMCTANLIVTN 143 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k------------Rlg~~ni~vt~ 143 (731)
+.++.+|||.+||.|--+..||+. .-.|+|+|+++..++.+..... +....++.+..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-----------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-----------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-----------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence 356789999999999999999874 2479999999999987642110 01123455556
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHH
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGI 222 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L-~~lQ~~IL~rAl 222 (731)
.|...++.- ....||.|+- - +. |. .+ .....+.+.+..
T Consensus 104 ~D~~~l~~~--------------------~~~~fd~v~D-~-----~~-------~~--------~l~~~~R~~~~~~l~ 142 (218)
T PRK13255 104 GDFFALTAA--------------------DLADVDAVYD-R-----AA-------LI--------ALPEEMRERYVQQLA 142 (218)
T ss_pred CcccCCCcc--------------------cCCCeeEEEe-h-----Hh-------Hh--------hCCHHHHHHHHHHHH
Confidence 665543210 1146788873 0 00 00 11 123456788889
Q ss_pred hhccCCCEEEEEeCCC
Q 004775 223 SLLKVGGRIVYSTCSM 238 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl 238 (731)
++|+|||++++.|=.+
T Consensus 143 ~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 143 ALLPAGCRGLLVTLDY 158 (218)
T ss_pred HHcCCCCeEEEEEEEe
Confidence 9999999755544433
No 190
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.48 E-value=0.001 Score=65.91 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=103.6
Q ss_pred hhHHHHHHHhhcccccCcEEecCccccchhhh----cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE
Q 004775 42 QTLERFHKFLKLENEIGNITRQEAVSMVPPLF----LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117 (731)
Q Consensus 42 ~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~ll----Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn 117 (731)
.++.-|..|+......|.|.- +|-+.+.. .++..|--||.++.|+|-.|-.|++.... ...++|+
T Consensus 11 ~e~~F~k~wi~~PrtVGaI~P---sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~--------~~~L~~i 79 (194)
T COG3963 11 EEISFFKGWIDNPRTVGAILP---SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVR--------PESLTAI 79 (194)
T ss_pred HHHHHHHHHhcCCceeeeecC---CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCC--------ccceEEE
Confidence 567778899999999998863 33333222 36788999999999999999999887543 4689999
Q ss_pred eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004775 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (731)
Q Consensus 118 Did~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd 197 (731)
+.|+.....|.+. . +.+.++++||..+... + .......||.|+|-+|- .--|-
T Consensus 80 E~~~dF~~~L~~~---~--p~~~ii~gda~~l~~~-l---------------~e~~gq~~D~viS~lPl------l~~P~ 132 (194)
T COG3963 80 EYSPDFVCHLNQL---Y--PGVNIINGDAFDLRTT-L---------------GEHKGQFFDSVISGLPL------LNFPM 132 (194)
T ss_pred EeCHHHHHHHHHh---C--CCccccccchhhHHHH-H---------------hhcCCCeeeeEEecccc------ccCcH
Confidence 9999998877653 2 3455789988774311 1 12234789999998771 11111
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 198 ~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
..-.+||..++..|.+||.+|--|-+
T Consensus 133 --------------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 133 --------------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred --------------HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 12367999999999999999866655
No 191
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.48 E-value=0.00052 Score=69.33 Aligned_cols=97 Identities=24% Similarity=0.232 Sum_probs=74.0
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+|+|+++|.|-=..-+|-+. |...|+-+|...+|+..|.+-+..+|.+|+.+.+..+.. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~---------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~---------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR---------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P---------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH----------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T----------
T ss_pred eEEecCCCCCChhHHHHHhC---------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c----------
Confidence 89999999987777776553 467899999999999999999999999999999887766 1
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|++=+= ..+ ..++.-+..+|++||+++.-
T Consensus 111 -----------~~~~~fd~v~aRAv-------------------------~~l-~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 111 -----------EYRESFDVVTARAV-------------------------APL-DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -----------TTTT-EEEEEEESS-------------------------SSH-HHHHHHHGGGEEEEEEEEEE
T ss_pred -----------ccCCCccEEEeehh-------------------------cCH-HHHHHHHHHhcCCCCEEEEE
Confidence 11368999987321 111 24678889999999988765
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00048 Score=70.34 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred hcC--CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcC----------CCce
Q 004775 73 FLD--VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMC----------TANL 139 (731)
Q Consensus 73 lLd--~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~-VvAnDid~~R~~~L~~n~kRlg----------~~ni 139 (731)
.|+ ++||...||+++|+|..|+.++.++.. +|. ++++|.-+.-++..+.|+...- ...+
T Consensus 75 ~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~--------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 75 YLDDHLQPGASFLDVGSGSGYLTACFARMVGA--------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHhhccCcceeecCCCccHHHHHHHHHhcC--------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 455 799999999999999999999988875 454 4999999999999999886432 2345
Q ss_pred EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHH
Q 004775 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM 219 (731)
Q Consensus 140 ~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~ 219 (731)
.++.+|.... ......||+|.|-+-- .++.+
T Consensus 147 ~ivvGDgr~g---------------------~~e~a~YDaIhvGAaa----------------------------~~~pq 177 (237)
T KOG1661|consen 147 SIVVGDGRKG---------------------YAEQAPYDAIHVGAAA----------------------------SELPQ 177 (237)
T ss_pred EEEeCCcccc---------------------CCccCCcceEEEccCc----------------------------cccHH
Confidence 5556665541 1234689999984421 12345
Q ss_pred HHHhhccCCCEEEE
Q 004775 220 RGISLLKVGGRIVY 233 (731)
Q Consensus 220 rAl~lLKpGG~LVY 233 (731)
+-+..|++||+|+.
T Consensus 178 ~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 178 ELLDQLKPGGRLLI 191 (237)
T ss_pred HHHHhhccCCeEEE
Confidence 56788999999985
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.43 E-value=0.00058 Score=79.01 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+..+||+|||-|..++++|..- |.-.++|+|+...++..+...+.+.+..|+.++..|+..+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~---------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~----- 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN---------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND----- 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-----
Confidence 47799999999999999998872 5678999999999999999999999999999888876543211
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
....++|+|.+--| |-|.+- .-..---+|...|....++||+||.|-+.|=.
T Consensus 413 --------------~~~~sv~~i~i~FP-----------DPWpKk---rh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 413 --------------LPNNSLDGIYILFP-----------DPWIKN---KQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred --------------cCcccccEEEEECC-----------CCCCCC---CCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 22356899988555 455331 11111124566788889999999999888744
No 194
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.40 E-value=0.0013 Score=70.89 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL-IVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni-~vt~~Da~~fp~~~~~~ 156 (731)
.|.+|||++|+.|..+..++.. +...|+|+|.+..-+....---+-+|.... .....-...+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~----------GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------ 178 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR----------GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------ 178 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc----------CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence 5889999999999998887654 256899999887654432221122333321 11111111111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
. ...||.|+| .|++-+..+- ...|......|++||.||.=|-
T Consensus 179 ---------------~-~~~FDtVF~------MGVLYHrr~P----------------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 179 ---------------N-LGAFDTVFS------MGVLYHRRSP----------------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ---------------c-cCCcCEEEE------eeehhccCCH----------------HHHHHHHHHhhCCCCEEEEEEe
Confidence 1 367999997 7777543221 2346666778999999998876
Q ss_pred CC
Q 004775 237 SM 238 (731)
Q Consensus 237 Sl 238 (731)
-+
T Consensus 221 vi 222 (315)
T PF08003_consen 221 VI 222 (315)
T ss_pred ee
Confidence 55
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.39 E-value=0.00054 Score=72.03 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=53.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
.+++.++++|||+|||+|..|..|++.. ..|+|+|+|+..+..+..++.. ..++.+.+.|+..++
T Consensus 24 ~~~~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 24 AANVLEGDVVLEIGPGLGALTEPLLKRA-----------KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD 88 (253)
T ss_pred hcCCCCcCEEEEeCCCCCHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC
Confidence 3467789999999999999999998762 3599999999999988876533 467888999987754
No 196
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.37 E-value=0.00044 Score=75.69 Aligned_cols=74 Identities=24% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.+|++|||+||+|||+|-+|++. .+.|+|+|..+-. ..+ +..+++.....|+..+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-----------G~~V~AVD~g~l~-----~~L--~~~~~V~h~~~d~fr~~p---- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-----------GMFVTAVDNGPMA-----QSL--MDTGQVEHLRADGFKFRP---- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-----------CCEEEEEechhcC-----Hhh--hCCCCEEEEeccCcccCC----
Confidence 468999999999999999999875 3599999954321 111 334567666666554321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
....+|.|+||+-|.-
T Consensus 267 -----------------~~~~vDwvVcDmve~P 282 (357)
T PRK11760 267 -----------------PRKNVDWLVCDMVEKP 282 (357)
T ss_pred -----------------CCCCCCEEEEecccCH
Confidence 0357999999997643
No 197
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=0.00066 Score=70.69 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=41.3
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR 133 (731)
.+..+||++|-.|-.|++||..++. ..|+++|+|+.+++.++.+++-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~---------r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP---------RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc---------ceeeEeeccHHHHHHHHHhccc
Confidence 4678999999999999999998763 5799999999999999888753
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0013 Score=69.76 Aligned_cols=85 Identities=24% Similarity=0.203 Sum_probs=68.8
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
+..+++++++.||.+|+|.|+.|..|++. ...|+|+|+|+..+..|.+... ...|+.+++.|+-.++
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-----------~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d 89 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLER-----------AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD 89 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhh-----------cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCc
Confidence 34568889999999999999999999987 4679999999999999988654 3578999999998754
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
--. ...+++|+.+-|..=
T Consensus 90 ~~~--------------------l~~~~~vVaNlPY~I 107 (259)
T COG0030 90 FPS--------------------LAQPYKVVANLPYNI 107 (259)
T ss_pred chh--------------------hcCCCEEEEcCCCcc
Confidence 210 016899999999653
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.19 E-value=0.00094 Score=70.31 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=88.6
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecc
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHE 145 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg----~~ni~vt~~D 145 (731)
+++++.+ ...+||=+|.|-|+.+..++..- +-..|+++|+|+.-++++++-+.... -+++.++..|
T Consensus 69 ~~~~~~~-~p~~VLiiGgG~G~~~~ell~~~---------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 69 PPLLLHP-NPKRVLIIGGGDGGTARELLKHP---------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHSS-ST-EEEEEESTTSHHHHHHTTST---------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred hHhhcCC-CcCceEEEcCCChhhhhhhhhcC---------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 4455554 46799999999999877765431 23689999999999999988766532 3689999999
Q ss_pred cccCCCcccCCCCCCCCccccccccccccc-cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQL-LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~-~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (731)
|..|-.- ... +||+|++|.+= ..|.. . . -.....++.+.+.
T Consensus 139 g~~~l~~--------------------~~~~~yDvIi~D~~d-p~~~~-------------~--~--l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 139 GRKFLKE--------------------TQEEKYDVIIVDLTD-PDGPA-------------P--N--LFTREFYQLCKRR 180 (246)
T ss_dssp HHHHHHT--------------------SSST-EEEEEEESSS-TTSCG-------------G--G--GSSHHHHHHHHHH
T ss_pred hHHHHHh--------------------ccCCcccEEEEeCCC-CCCCc-------------c--c--ccCHHHHHHHHhh
Confidence 9876321 113 89999999872 22211 0 0 1224567778889
Q ss_pred ccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 225 LKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 225 LKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
|++||.++.-. -+|..++..+..+.+.
T Consensus 181 L~~~Gv~v~~~--~~~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 181 LKPDGVLVLQA--GSPFLHPELFKSILKT 207 (246)
T ss_dssp EEEEEEEEEEE--EETTTTHHHHHHHHHH
T ss_pred cCCCcEEEEEc--cCcccchHHHHHHHHH
Confidence 99999998764 3334566666666554
No 200
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0046 Score=68.67 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=91.1
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCC-------------------------------CCCCCCCeEEEEEeCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQST-------------------------------NPGALPNGMVIANDLD 120 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~-------------------------------~~~~~p~G~VvAnDid 120 (731)
++.+.+++..++|=-||+|...+.+|.+-.+-+ +.+ .+--.+++.|+|
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~-~~~~~~~G~Did 263 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG-KELPIIYGSDID 263 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc-CccceEEEecCC
Confidence 345678889999999999998888765532100 000 011158899999
Q ss_pred HHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh
Q 004775 121 VQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW 199 (731)
Q Consensus 121 ~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~ 199 (731)
++.++.++.|+++.|+. -|.+...|++.+... ...+|+|+|+||. |.-.
T Consensus 264 ~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---------------------~~~~gvvI~NPPY-GeRl-------- 313 (381)
T COG0116 264 PRHIEGAKANARAAGVGDLIEFKQADATDLKEP---------------------LEEYGVVISNPPY-GERL-------- 313 (381)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---------------------CCcCCEEEeCCCc-chhc--------
Confidence 99999999999999986 477888998886431 1579999999994 2211
Q ss_pred hhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 200 RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 200 ~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
+.......+...+...+-+.++-.++.|++|
T Consensus 314 -----g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 314 -----GSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred -----CChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 1112234477777777778888888888885
No 201
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.12 E-value=0.0051 Score=74.02 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=67.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCC----------------------------------CCCeEEEEEeCCHH
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGA----------------------------------LPNGMVIANDLDVQ 122 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~----------------------------------~p~G~VvAnDid~~ 122 (731)
+++..++|-+||+|...+.+|.+..+- -+|. .....|+|+|+|+.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~-~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~ 267 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADI-APGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPR 267 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcC-CCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHH
Confidence 578999999999999888877653311 0000 01247999999999
Q ss_pred HHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 123 RCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 123 R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
.+..+++|+++.|+.+ +.+.+.|+..++.. .....||.|++|||.
T Consensus 268 av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-------------------~~~~~~d~IvtNPPY 313 (702)
T PRK11783 268 VIQAARKNARRAGVAELITFEVKDVADLKNP-------------------LPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHcCCCcceEEEeCChhhcccc-------------------cccCCCCEEEECCCC
Confidence 9999999999999864 77888888775421 112469999999995
No 202
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.07 E-value=0.0018 Score=73.93 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=85.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+-.|||+|||.|-.+...+.+.... .....|+|+|.++..+..|++.+++.+. ..|.|++.|...+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~-----~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l------ 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARA-----GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL------ 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHH-----CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHh-----CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC------
Confidence 5689999999999876555543210 1246999999999999999888888886 569999999887531
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
+.++|+|+.-.= |. .....+-.+.|..+-++|||||+++=+.++
T Consensus 256 ----------------pekvDIIVSElL----Gs----------------fg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t 299 (448)
T PF05185_consen 256 ----------------PEKVDIIVSELL----GS----------------FGDNELSPECLDAADRFLKPDGIMIPSSYT 299 (448)
T ss_dssp ----------------SS-EEEEEE-------BT----------------TBTTTSHHHHHHHGGGGEEEEEEEESSEEE
T ss_pred ----------------CCceeEEEEecc----CC----------------ccccccCHHHHHHHHhhcCCCCEEeCcchh
Confidence 258999996321 11 223334456788888999999999944444
Q ss_pred --CCCcCcHHHHHHHH
Q 004775 238 --MNPVENEAVVAEIL 251 (731)
Q Consensus 238 --l~p~ENEaVV~~~L 251 (731)
+.|++.+..-..+.
T Consensus 300 ~ylaPiss~~l~~~~~ 315 (448)
T PF05185_consen 300 SYLAPISSPKLYQEVR 315 (448)
T ss_dssp EEEEEEE-HHHHHHHH
T ss_pred hEEEEeeCHHHHHHHH
Confidence 67888887666654
No 203
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.06 E-value=0.0018 Score=72.32 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCcccCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n--i~vt~~Da~~fp~~~~~~ 156 (731)
+-+|||.-||+|--++-.+.-+.+ ...|++||+|+..+++++.|++.+++.. +.+.+.||..+-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~--------~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----- 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAG--------VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----- 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SS--------ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----
T ss_pred CceEEeccccccHHHHHHHHHcCC--------CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----
Confidence 458999999999999988776543 4689999999999999999999999865 8888889876311
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.....||.|=+||= |+ + .-.|..|++.+|.||. ++.||
T Consensus 117 ---------------~~~~~fD~IDlDPf----GS------------p----------~pfldsA~~~v~~gGl-l~vTa 154 (377)
T PF02005_consen 117 ---------------SRQERFDVIDLDPF----GS------------P----------APFLDSALQAVKDGGL-LCVTA 154 (377)
T ss_dssp ---------------HSTT-EEEEEE--S----S------------------------HHHHHHHHHHEEEEEE-EEEEE
T ss_pred ---------------hccccCCEEEeCCC----CC------------c----------cHhHHHHHHHhhcCCE-EEEec
Confidence 12378999999983 21 1 2358889999999765 56677
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
|
T Consensus 155 T 155 (377)
T PF02005_consen 155 T 155 (377)
T ss_dssp -
T ss_pred c
Confidence 7
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.0025 Score=65.93 Aligned_cols=133 Identities=23% Similarity=0.239 Sum_probs=94.1
Q ss_pred hHHHHHHHhhcccccCcEEe-cCccccchhhhcCC------CC--CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeE
Q 004775 43 TLERFHKFLKLENEIGNITR-QEAVSMVPPLFLDV------QP--DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM 113 (731)
Q Consensus 43 ~l~~~~~~l~~~~~~G~i~~-Qd~~Smlp~llLd~------~p--g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~ 113 (731)
.+..+.+.|...++.=|++. -+...|+.-+++|. .+ +.+|+|+++|+|-=..-+| .+. |...
T Consensus 23 ~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLA-I~~--------p~~~ 93 (215)
T COG0357 23 KLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLA-IAF--------PDLK 93 (215)
T ss_pred HHHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHH-Hhc--------cCCc
Confidence 34444454555455555554 34556666666541 12 6899999999998777776 332 4677
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc-ccEEEecCCCCCCCcc
Q 004775 114 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL-FDRVLCDVPCSGDGTL 192 (731)
Q Consensus 114 VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~-FDrIL~D~PCSGdGtl 192 (731)
|+-+|...+|+.-|+.-.+.++.+|+.+++..+..|..- .. ||.|.+=+=
T Consensus 94 vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----------------------~~~~D~vtsRAv------- 144 (215)
T COG0357 94 VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----------------------KKQYDVVTSRAV------- 144 (215)
T ss_pred EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----------------------cccCcEEEeehc-------
Confidence 999999999999999999999999999999988876421 12 999987332
Q ss_pred ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 193 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 193 rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
..+ -.++.-+..++|+||.++
T Consensus 145 ------------------a~L-~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------------------ASL-NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------------------cch-HHHHHHHHHhcccCCcch
Confidence 111 236677889999988865
No 205
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.01 E-value=0.0042 Score=65.05 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=77.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~-fp~~~~~~ 156 (731)
.|.+|| |-|=+-.|+.++.+.+. ...|+.+|+|..-+..+.+.+++.|.+ +....+|.+. +|.
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~--------~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~----- 107 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGL--------PKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE----- 107 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT----------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T-----
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCC--------CCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH-----
Confidence 467887 55566666665555432 468999999999999999999999988 8889999876 221
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.-..+||.++.|||.+-.|. .-.|.||++.||.-|..+|-.+
T Consensus 108 ---------------~~~~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 108 ---------------ELRGKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---------------TTSS-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE
T ss_pred ---------------HHhcCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEE
Confidence 11278999999999665543 2358899999998775666666
Q ss_pred CCCCc-CcH-HHHHHHHHHCCCcEEEEecCccCCcc
Q 004775 237 SMNPV-ENE-AVVAEILRKCEGSVELVDVSNEVPQL 270 (731)
Q Consensus 237 Sl~p~-ENE-aVV~~~L~~~~g~~elvd~s~~lP~l 270 (731)
|..+. -.+ .-|+++|.+.| +-+-++ +|.|
T Consensus 150 ~~~~~s~~~~~~~Q~~l~~~g--l~i~di---i~~F 180 (243)
T PF01861_consen 150 THKEASPDKWLEVQRFLLEMG--LVITDI---IPDF 180 (243)
T ss_dssp -TTT--HHHHHHHHHHHHTS----EEEEE---EEEE
T ss_pred ecCcCcHHHHHHHHHHHHHCC--cCHHHH---Hhhh
Confidence 66542 222 35788887665 555554 4544
No 206
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.99 E-value=0.0034 Score=63.71 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
++||.+|||++||-|..-.+|.+.. .-..+++|+|+..+...+.+ | +.|+++|+..-.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k----------~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL----- 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK----------QVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGL----- 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc----------CCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhH-----
Confidence 5799999999999998766665531 35689999999987766542 3 456777765411
Q ss_pred CCCCCCCccccccccccccccccEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLC 182 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~ 182 (731)
..+....||.|++
T Consensus 69 --------------~~f~d~sFD~VIl 81 (193)
T PF07021_consen 69 --------------ADFPDQSFDYVIL 81 (193)
T ss_pred --------------hhCCCCCccEEeh
Confidence 1233578999986
No 207
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.96 E-value=0.0033 Score=64.24 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~-vt~~Da~~fp~~~~~~~ 157 (731)
.-.||.++||||.---. . ...|.-.|+++|.+++.-+.+...++...-.++. ++.+++.++|.+
T Consensus 77 K~~vLEvgcGtG~Nfkf----y------~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l----- 141 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKF----Y------PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL----- 141 (252)
T ss_pred ccceEEecccCCCCccc----c------cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-----
Confidence 34689999999962111 1 1235679999999999999998888766545555 778888887743
Q ss_pred CCCCCccccccccccccccccEEEec-CCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCD-VPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D-~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...++|.|+|- +=|| +..+.++|....++|||||++++-
T Consensus 142 ---------------~d~s~DtVV~TlvLCS-----------------------ve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 142 ---------------ADGSYDTVVCTLVLCS-----------------------VEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred ---------------ccCCeeeEEEEEEEec-----------------------cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 23789999873 2333 344678899999999999999985
No 208
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.00069 Score=65.58 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=57.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.|..++|+|||.|..+++. .+.. ...|+++|+|+..++...+|+..+.+. +.+.++|....
T Consensus 48 Egkkl~DLgcgcGmLs~a~-sm~~---------~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildl-------- 108 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF-SMPK---------NESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDL-------- 108 (185)
T ss_pred cCcchhhhcCchhhhHHHh-hcCC---------CceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccch--------
Confidence 6889999999999977443 2322 468999999999999999998876542 34444443321
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCc
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGt 191 (731)
....+.||.++.||| .||
T Consensus 109 -------------e~~~g~fDtaviNpp---FGT 126 (185)
T KOG3420|consen 109 -------------ELKGGIFDTAVINPP---FGT 126 (185)
T ss_pred -------------hccCCeEeeEEecCC---CCc
Confidence 112378999999999 455
No 209
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.94 E-value=0.0033 Score=66.44 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
..+++||++||-|+-|..++... ..|+|-|+|..+...|.+ -|. .+...+ ++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-----------~~v~aTE~S~~Mr~rL~~----kg~---~vl~~~--~w~------- 146 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-----------KEVYATEASPPMRWRLSK----KGF---TVLDID--DWQ------- 146 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-----------ceEEeecCCHHHHHHHHh----CCC---eEEehh--hhh-------
Confidence 45789999999999999998874 469999999988665543 343 333222 221
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....+||+|-| .-. ..-+..-..+|+...+.|+|+|++|.+
T Consensus 147 --------------~~~~~fDvIsc------LNv----------------LDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 147 --------------QTDFKFDVISC------LNV----------------LDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------------ccCCceEEEee------hhh----------------hhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 11257999986 111 111222356788899999999999976
No 210
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.86 E-value=0.0061 Score=62.93 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=90.1
Q ss_pred CcEEecCccccchhhhcCCCC--CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 58 GNITRQEAVSMVPPLFLDVQP--DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~p--g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
--+.+|-.-+.-...+|++.. ...|||++||+|--+..|.+ +.-..+++|+|+.+++.+.++ .+.
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-----------~Gh~wiGvDiSpsML~~a~~~--e~e 94 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-----------SGHQWIGVDISPSMLEQAVER--ELE 94 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-----------CCceEEeecCCHHHHHHHHHh--hhh
Confidence 345667666666777777776 67999999999976554422 124789999999999988862 332
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
..++. +|.- ....+..+.||.+|.= +. -.|--..-..+|.-+.
T Consensus 95 -gdlil--~DMG--------------------~GlpfrpGtFDg~ISI------SA--------vQWLcnA~~s~~~P~~ 137 (270)
T KOG1541|consen 95 -GDLIL--CDMG--------------------EGLPFRPGTFDGVISI------SA--------VQWLCNADKSLHVPKK 137 (270)
T ss_pred -cCeee--eecC--------------------CCCCCCCCccceEEEe------ee--------eeeecccCccccChHH
Confidence 12221 2211 1123456889988741 00 1343333334444444
Q ss_pred HHHH---HHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 216 QIAM---RGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 216 ~IL~---rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
+|+. .....|+.|++-|+= ...||++.+..++..
T Consensus 138 Rl~~FF~tLy~~l~rg~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 138 RLLRFFGTLYSCLKRGARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred HHHHHhhhhhhhhccCceeEEE----ecccchHHHHHHHHH
Confidence 4433 456789999999976 667999998888864
No 211
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.78 E-value=0.002 Score=67.19 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=33.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHH
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN 125 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~ 125 (731)
-.|..|||++||||++|..+++. +.+.|+|+|++...+.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----------ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----------GAKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----------CCCEEEEEeCCHHHHH
Confidence 36889999999999999999875 2479999999997554
No 212
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.73 E-value=0.016 Score=62.24 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL-IVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni-~vt~~Da~~fp~~~~~~ 156 (731)
..-+|||+|||+|.--+-+++.... . .-.|.-+|.++.-++.-++.++..|..++ .+++.||.+...+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~------~-~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~--- 204 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE------R-PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA--- 204 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC------C-CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh---
Confidence 3459999999999875555544321 1 24889999999999999999999999887 89999987743221
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.-....+.+++ | |...--|| ..+-.+.|.-....+.|||+|||+.=
T Consensus 205 ---------------~l~p~P~l~iV----s--GL~ElF~D-------------n~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 205 ---------------ALDPAPTLAIV----S--GLYELFPD-------------NDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred ---------------ccCCCCCEEEE----e--cchhhCCc-------------HHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 11235677876 3 32211111 11223346666778999999999866
Q ss_pred CCCCcCcHHHHHHHHHHCC
Q 004775 237 SMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~ 255 (731)
-+||. -..|+.+|..|.
T Consensus 251 PwHPQ--le~IAr~LtsHr 267 (311)
T PF12147_consen 251 PWHPQ--LEMIARVLTSHR 267 (311)
T ss_pred CCCcc--hHHHHHHHhccc
Confidence 67774 246788888763
No 213
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.72 E-value=0.0083 Score=62.28 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=78.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
..+..+..+|||++.|.|..+..++... |.-+++..|. +.-+..+.. ..++.++.+|... .
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~- 155 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAY---------PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--P- 155 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHS---------TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--C-
T ss_pred cccccCccEEEeccCcchHHHHHHHHHC---------CCCcceeecc-Hhhhhcccc------ccccccccccHHh--h-
Confidence 4466777899999999999999998773 4568888998 444444433 5678888887642 1
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC--CE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG--GR 230 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG--G~ 230 (731)
.+. +|+|++ ..+.+.|+... -.+||+++.+.|+|| |+
T Consensus 156 --------------------~P~-~D~~~l-------------~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 156 --------------------LPV-ADVYLL-------------RHVLHDWSDED-------CVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp --------------------CSS-ESEEEE-------------ESSGGGS-HHH-------HHHHHHHHHHHSEECTTEE
T ss_pred --------------------hcc-ccceee-------------ehhhhhcchHH-------HHHHHHHHHHHhCCCCCCe
Confidence 013 899987 12455665433 478999999999999 99
Q ss_pred EEEEeCCCCCcCcHHHH
Q 004775 231 IVYSTCSMNPVENEAVV 247 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV 247 (731)
|+..-.-+.....+...
T Consensus 195 llI~e~~~~~~~~~~~~ 211 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPS 211 (241)
T ss_dssp EEEEEEEECSSSSSHHH
T ss_pred EEEEeeccCCCCCCchH
Confidence 99887766555554443
No 214
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.58 E-value=0.0017 Score=66.88 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~ 156 (731)
--+.|+|.+||-||-|+|-|.. .-.|+|+|+|+-++++++||++-.|+++ +.++++|....-.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-----------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~----- 157 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-----------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS----- 157 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-----------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH-----
Confidence 4568889999999888887654 2478999999999999999999999875 6777777543100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~ 195 (731)
........+|.|+.-||-+|.|-++..
T Consensus 158 ------------~lq~~K~~~~~vf~sppwggp~y~~~~ 184 (263)
T KOG2730|consen 158 ------------KLKADKIKYDCVFLSPPWGGPSYLRAD 184 (263)
T ss_pred ------------HHhhhhheeeeeecCCCCCCcchhhhh
Confidence 011112347788888898998877654
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.01 Score=63.93 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=84.2
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEec
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNH 144 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg----~~ni~vt~~ 144 (731)
.++++..++| .+||=++-|.|+.+-.++... +--.++++|+|++=+++.+.-+.... -+++.+...
T Consensus 68 h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~---------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~ 137 (282)
T COG0421 68 HVPLLAHPNP-KRVLIIGGGDGGTLREVLKHL---------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID 137 (282)
T ss_pred hchhhhCCCC-CeEEEECCCccHHHHHHHhcC---------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec
Confidence 4455566677 699999999999888887653 24689999999999998888765443 256778888
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (731)
|+..|-.. ...+||+|++|.- |+. ...+ .| ......+.+.+.
T Consensus 138 Dg~~~v~~--------------------~~~~fDvIi~D~t---dp~-gp~~------------~L--ft~eFy~~~~~~ 179 (282)
T COG0421 138 DGVEFLRD--------------------CEEKFDVIIVDST---DPV-GPAE------------AL--FTEEFYEGCRRA 179 (282)
T ss_pred cHHHHHHh--------------------CCCcCCEEEEcCC---CCC-Cccc------------cc--CCHHHHHHHHHh
Confidence 88775321 1138999999963 221 0011 11 234567778889
Q ss_pred ccCCCEEEEEeCC
Q 004775 225 LKVGGRIVYSTCS 237 (731)
Q Consensus 225 LKpGG~LVYSTCS 237 (731)
|+++|.+|.=+=|
T Consensus 180 L~~~Gi~v~q~~~ 192 (282)
T COG0421 180 LKEDGIFVAQAGS 192 (282)
T ss_pred cCCCcEEEEecCC
Confidence 9999999887444
No 216
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.44 E-value=0.011 Score=61.32 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEE
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR------------MCTANLIVT 142 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR------------lg~~ni~vt 142 (731)
...++.+||+-+||.|--...||+. .-.|+|+|+++..++.+.+.... ....+|.+.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~-----------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ-----------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT-----------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC-----------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 4577889999999999988888774 34899999999999877433211 012245667
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004775 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (731)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (731)
++|...++. ...++||.|.= |...-.| .|+.+. +-.++..
T Consensus 103 ~gDfF~l~~--------------------~~~g~fD~iyD---r~~l~Al--pp~~R~---------------~Ya~~l~ 142 (218)
T PF05724_consen 103 CGDFFELPP--------------------EDVGKFDLIYD---RTFLCAL--PPEMRE---------------RYAQQLA 142 (218)
T ss_dssp ES-TTTGGG--------------------SCHHSEEEEEE---CSSTTTS---GGGHH---------------HHHHHHH
T ss_pred EcccccCCh--------------------hhcCCceEEEE---ecccccC--CHHHHH---------------HHHHHHH
Confidence 777665432 11257999972 1111111 344433 3466778
Q ss_pred hhccCCCEEEEEeCCCC
Q 004775 223 SLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl~ 239 (731)
++|+|||++++.|-...
T Consensus 143 ~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 143 SLLKPGGRGLLITLEYP 159 (218)
T ss_dssp HCEEEEEEEEEEEEES-
T ss_pred HHhCCCCcEEEEEEEcC
Confidence 89999999666654443
No 217
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.36 E-value=0.033 Score=58.14 Aligned_cols=113 Identities=13% Similarity=0.059 Sum_probs=72.7
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH------------HHcCCCceEEEe
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT------------KRMCTANLIVTN 143 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~------------kRlg~~ni~vt~ 143 (731)
+.++.+||+.+||.|-=...||+. .-.|+|+|+|+..++.+.+.. ++....++.+.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~-----------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK-----------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC-----------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE
Confidence 346789999999999999998875 236999999999998875521 112223567777
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
+|...++.. ......||.|.- - ...-.+ .|+ ...+.+.+..+
T Consensus 110 gD~f~l~~~------------------~~~~~~fD~VyD-r--a~~~Al--pp~---------------~R~~Y~~~l~~ 151 (226)
T PRK13256 110 ADIFNLPKI------------------ANNLPVFDIWYD-R--GAYIAL--PND---------------LRTNYAKMMLE 151 (226)
T ss_pred ccCcCCCcc------------------ccccCCcCeeee-e--hhHhcC--CHH---------------HHHHHHHHHHH
Confidence 777664310 001246888752 1 000011 222 23456778888
Q ss_pred hccCCCEEEEEeCC
Q 004775 224 LLKVGGRIVYSTCS 237 (731)
Q Consensus 224 lLKpGG~LVYSTCS 237 (731)
+|+|||+++.-|-.
T Consensus 152 lL~pgg~llll~~~ 165 (226)
T PRK13256 152 VCSNNTQILLLVME 165 (226)
T ss_pred HhCCCcEEEEEEEe
Confidence 99999999887643
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.23 E-value=0.017 Score=61.40 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=63.2
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp 150 (731)
.-.+++|+|.||.++-|||+-|..|++. ...|+|+++|+..+..|..+.+-... ..+.|..+|.-..+
T Consensus 52 ~ka~~k~tD~VLEvGPGTGnLT~~lLe~-----------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 52 EKADLKPTDVVLEVGPGTGNLTVKLLEA-----------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred hccCCCCCCEEEEeCCCCCHHHHHHHHh-----------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 3457899999999999999999999887 46899999999999988887653332 24777777754321
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
...||.++.+.|.
T Consensus 121 -----------------------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 -----------------------LPRFDGCVSNLPY 133 (315)
T ss_pred -----------------------CcccceeeccCCc
Confidence 2469999998874
No 219
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.21 E-value=0.0083 Score=64.15 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=55.6
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+|+|+|||.|+.+..+.++ + --.|+|+|+++..++.+++|.. +. +.+.|...+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G---------~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~-------- 57 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G---------FEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEK-------- 57 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C---------CEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchh--------
Confidence 6999999999998776443 1 3578999999999999888753 11 344555543210
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcccc
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk 194 (731)
.. ...+|.|+.++||.+.-...+
T Consensus 58 ----------~~-~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 58 ----------DF-IPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred ----------hc-CCCCCEEEeCCCChhhhHHhh
Confidence 00 246999999999988765443
No 220
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.18 E-value=0.017 Score=58.05 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=38.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~ 147 (731)
.++.+|||+|||+|..+..+++.. ...++++|+++..+..+.. . ++.+...|+.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~----------~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~ 65 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK----------QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLD 65 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc----------CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhh
Confidence 478899999999999887776542 2357999999987766532 1 3445555554
No 221
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.013 Score=64.68 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=86.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
.-.|||.-+|+|--.+-+|--+. .-.|++||++++.+++++.|++++...+..++|.||..+-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~---------~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~------- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG---------VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH------- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC---------ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH-------
Confidence 67999999999998887765432 23799999999999999999998856667777888765421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC-
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS- 237 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS- 237 (731)
.....||.|=+||= |+ | .-.+..|++.++.||.|..+ ||
T Consensus 117 -------------~~~~~fd~IDiDPF----GS------------P----------aPFlDaA~~s~~~~G~l~vT-ATD 156 (380)
T COG1867 117 -------------ELHRAFDVIDIDPF----GS------------P----------APFLDAALRSVRRGGLLCVT-ATD 156 (380)
T ss_pred -------------hcCCCccEEecCCC----CC------------C----------chHHHHHHHHhhcCCEEEEE-ecc
Confidence 11268999999983 22 1 12478889999999988765 54
Q ss_pred CCCcCcHHHHHHHHHHCC
Q 004775 238 MNPVENEAVVAEILRKCE 255 (731)
Q Consensus 238 l~p~ENEaVV~~~L~~~~ 255 (731)
..+...- .-...+++++
T Consensus 157 ~a~L~G~-~p~~c~rkY~ 173 (380)
T COG1867 157 TAPLCGS-YPRKCRRKYG 173 (380)
T ss_pred cccccCC-ChHHHHHHhc
Confidence 4443333 3456666665
No 222
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.17 E-value=0.017 Score=62.59 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=77.8
Q ss_pred ccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-C-C----ceE
Q 004775 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-T-A----NLI 140 (731)
Q Consensus 67 Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~-~----ni~ 140 (731)
|+|.-+++ ++++.||||+||-||-.+-.-. + .-|.+|++|+..--++.++.+.+.+. . . ...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~k---A-------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDK---A-------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhh---h-------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 44444443 6899999999999995443321 1 34789999997766666655544331 1 1 123
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004775 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (731)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (731)
+..+|-..- .+ .+. ......+||+|=|--. ..-...-...-..+|++
T Consensus 176 f~~~Dc~~~-~l-----------~d~---~e~~dp~fDivScQF~------------------~HYaFetee~ar~~l~N 222 (389)
T KOG1975|consen 176 FIAADCFKE-RL-----------MDL---LEFKDPRFDIVSCQFA------------------FHYAFETEESARIALRN 222 (389)
T ss_pred EEEeccchh-HH-----------HHh---ccCCCCCcceeeeeee------------------EeeeeccHHHHHHHHHH
Confidence 333433210 00 000 0012234888865211 11111112234567899
Q ss_pred HHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHC
Q 004775 221 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 221 Al~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
+.++|||||.++-++ -|-.||-+-|+..
T Consensus 223 va~~LkpGG~FIgTi------Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 223 VAKCLKPGGVFIGTI------PDSDVIIKRLRAG 250 (389)
T ss_pred HHhhcCCCcEEEEec------CcHHHHHHHHHhc
Confidence 999999999998652 5667787777754
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.09 E-value=0.012 Score=62.36 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=55.0
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
..+++.+++.|||+++|+|..|..|++. ...|+|+|+|+..+..|.+... ..+++.+++.|+..+.
T Consensus 24 ~~~~~~~~~~VlEiGpG~G~lT~~L~~~-----------~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 24 DALDLSEGDTVLEIGPGPGALTRELLKR-----------GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHTCGTTSEEEEESSTTSCCHHHHHHH-----------SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HhcCCCCCCEEEEeCCCCccchhhHhcc-----------cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 3457779999999999999999999887 2689999999999999887554 4578999999988764
No 224
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.09 E-value=0.022 Score=59.56 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=71.4
Q ss_pred CCCCCC-EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 75 DVQPDH-FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~-~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
...++| ..+|++||+| +|+.+++-.- -.|||.|++...+..++... + +.- ++-...+..-
T Consensus 29 ~~~~~h~~a~DvG~G~G-qa~~~iae~~----------k~VIatD~s~~mL~~a~k~~-----~-~~y-~~t~~~ms~~- 89 (261)
T KOG3010|consen 29 SRTEGHRLAWDVGTGNG-QAARGIAEHY----------KEVIATDVSEAMLKVAKKHP-----P-VTY-CHTPSTMSSD- 89 (261)
T ss_pred hhCCCcceEEEeccCCC-cchHHHHHhh----------hhheeecCCHHHHHHhhcCC-----C-ccc-ccCCcccccc-
Confidence 345666 8999999999 6655554332 37999999999998665422 1 111 1111111100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
-..+......++|.|+| +-| + .|- .| .+..+.+-++||+.|-++-
T Consensus 90 ------------~~v~L~g~e~SVDlI~~-Aqa-----------~--HWF-----dl----e~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 90 ------------EMVDLLGGEESVDLITA-AQA-----------V--HWF-----DL----ERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred ------------ccccccCCCcceeeehh-hhh-----------H--Hhh-----ch----HHHHHHHHHHcCCCCCEEE
Confidence 00011112478999987 111 1 121 12 3455667788887663332
Q ss_pred EeCCC-CCcCcHHHHHHHHHHCC
Q 004775 234 STCSM-NPVENEAVVAEILRKCE 255 (731)
Q Consensus 234 STCSl-~p~ENEaVV~~~L~~~~ 255 (731)
.=|-. +.+-+.++..-+++.+.
T Consensus 135 vW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 135 VWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred EEEccCCCcCCHHHHHHHHHHhh
Confidence 22333 78888888888887653
No 225
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.18 Score=51.00 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=92.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
-..+|+++||+|--++.|+..+. |....+|.|+++..++.-.+-++.++. ++.++..|... .
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--------~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~--~------- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--------PQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLS--G------- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--------CCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHh--h-------
Confidence 56799999999999999999875 367889999999999988887776655 35555554332 1
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCC--ccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDG--TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG--tlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
....+.|+++-+||.--+- -+. ...+-..|. .+..-...--++|...-.+|.|-|.+-..+|
T Consensus 106 -------------l~~~~VDvLvfNPPYVpt~~~~i~-~~~i~~a~a--GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 106 -------------LRNESVDVLVFNPPYVPTSDEEIG-DEGIASAWA--GGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred -------------hccCCccEEEECCCcCcCCcccch-hHHHHHHHh--cCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 1227899999999853221 110 111112232 1222223344577777789999998877777
Q ss_pred CCCCcCcHHHHHHHHHHCCCcE
Q 004775 237 SMNPVENEAVVAEILRKCEGSV 258 (731)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~g~~ 258 (731)
.-| +..-|-.+++..+..+
T Consensus 170 ~~N---~p~ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 170 RAN---KPKEILKILEKKGYGV 188 (209)
T ss_pred hhc---CHHHHHHHHhhcccce
Confidence 654 3333445777655333
No 226
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.99 E-value=0.038 Score=64.03 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=86.2
Q ss_pred ccCcEEecCccccchhhhcCCC--CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQ--PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~--pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR 133 (731)
..|.++.-..++.+.+.++++. |+..|.|||||+|+...+....++.. ...-.+++.+.......+.+.++.-
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~-----qe~~~~~gqe~~~~~~~~a~mnm~l 267 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEK-----TSLVSYYGQEINHTTYNLCRMNMIL 267 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhccc-----ccceeEEEEeCchHHHHHHHHHHHH
Confidence 4455555444444444555554 77899999999999876654443210 1135689999998888777777644
Q ss_pred cCC--CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCC---CccccChhhhhhccccccc
Q 004775 134 MCT--ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD---GTLRKAPDIWRKWNVGLGN 208 (731)
Q Consensus 134 lg~--~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd---Gtlrk~pd~~~~w~~~~~~ 208 (731)
.+. ..+.+..+|...-+. ......||.|+++||-+.. |.+....+..+.|......
T Consensus 268 ~~~~~~t~~~~~~dtl~~~d-------------------~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~ 328 (501)
T TIGR00497 268 HNIDYANFNIINADTLTTKE-------------------WENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLA 328 (501)
T ss_pred cCCCccccCcccCCcCCCcc-------------------ccccccCCEEeecCCcccccccccccccccccchhcccCCC
Confidence 433 122222232211000 0112469999999998764 1111000111112222223
Q ss_pred chHHHHHHHHHHHHhhccCCCEEE
Q 004775 209 GLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 209 ~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.+.......+.+++..|++||+..
T Consensus 329 ~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 329 PNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred CCchhhHHHHHHHHHhcCCCCeEE
Confidence 344567778888999999999743
No 227
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.96 E-value=0.02 Score=56.12 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=56.6
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004775 115 IANDLDVQRCNLLIHQTKRMC---TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (731)
Q Consensus 115 vAnDid~~R~~~L~~n~kRlg---~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGt 191 (731)
+|+|+|+..++.++.+.+..+ ..++.+...|+..+|. ....||.|++- .+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---------------------~~~~fD~v~~~-----~~- 53 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---------------------DDCEFDAVTMG-----YG- 53 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC---------------------CCCCeeEEEec-----ch-
Confidence 479999999999877665322 3568888888887652 12579999861 11
Q ss_pred cccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 192 lrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
++ .| ....+.|+...++|||||+++....+.
T Consensus 54 l~-------~~---------~d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 54 LR-------NV---------VDRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred hh-------cC---------CCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 11 11 123567899999999999998776653
No 228
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.87 E-value=0.027 Score=53.19 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=48.5
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~ 147 (731)
.|||++|+.|..+..++... +.+.|+|+|.++..+..|+.+++.++.+++.+.+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~---------~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG---------AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC---------CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 48999999999999887752 34699999999999999999999888877777765443
No 229
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.79 E-value=0.19 Score=51.81 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=83.2
Q ss_pred EEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCC
Q 004775 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
|.|+||--|.-...|++. .....|+|+|+++.=+..+++++++.|.. .+.+...|+... +.
T Consensus 1 vaDIGtDHgyLpi~L~~~---------~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~--l~------- 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN---------GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV--LK------- 62 (205)
T ss_dssp EEEET-STTHHHHHHHHT---------TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----------
T ss_pred CceeccchhHHHHHHHhc---------CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc--cC-------
Confidence 789999999988888764 12468999999999999999999999864 577777776431 10
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCC
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p 240 (731)
.....|.|+. +|.|- .+-.+||.++...++...++|. .|
T Consensus 63 ------------~~e~~d~ivI----AGMGG--------------------~lI~~ILe~~~~~~~~~~~lIL-----qP 101 (205)
T PF04816_consen 63 ------------PGEDVDTIVI----AGMGG--------------------ELIIEILEAGPEKLSSAKRLIL-----QP 101 (205)
T ss_dssp ------------GGG---EEEE----EEE-H--------------------HHHHHHHHHTGGGGTT--EEEE-----EE
T ss_pred ------------CCCCCCEEEE----ecCCH--------------------HHHHHHHHhhHHHhccCCeEEE-----eC
Confidence 0123677776 45552 3567899999988887778887 35
Q ss_pred cCcHHHHHHHHHHCCCcEEEEe
Q 004775 241 VENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 241 ~ENEaVV~~~L~~~~g~~elvd 262 (731)
.-+...+..+|..++ |.+++
T Consensus 102 ~~~~~~LR~~L~~~g--f~I~~ 121 (205)
T PF04816_consen 102 NTHAYELRRWLYENG--FEIID 121 (205)
T ss_dssp SS-HHHHHHHHHHTT--EEEEE
T ss_pred CCChHHHHHHHHHCC--CEEEE
Confidence 578999999999876 55555
No 230
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.77 E-value=0.039 Score=54.94 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=38.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEec
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC---TANLIVTNH 144 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg---~~ni~vt~~ 144 (731)
...+.+||++|||.|--++.++.+.+ ...|++-|.++ -+..++.|+++++ ..++.+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~---------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L 104 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG---------AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL 104 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T----------SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred hcCCceEEEECCccchhHHHHHhccC---------CceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence 45688999999999977666665522 46899999999 9999999998876 234444443
No 231
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.0092 Score=67.75 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=83.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~-vt~~Da~~fp~ 151 (731)
+-.-..+-+|||.-+|+|--++.-|.-+.+ -+.|+|||.+...+....+|++.+++..++ ....||...
T Consensus 104 ~~~~~~~l~vLealsAtGlrslRya~El~~--------v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~l-- 173 (525)
T KOG1253|consen 104 LKREEKSLRVLEALSATGLRSLRYAKELPG--------VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVL-- 173 (525)
T ss_pred hhhccCcchHHHHhhhhhHHHHHHHHHhcc--------hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHH--
Confidence 334567889999999999999999888764 579999999999999999999998876644 444555431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
+.........||+|=+||= |+- -..|+.|++.++.||.
T Consensus 174 ---------------M~~~~~~~~~FDvIDLDPy----Gs~----------------------s~FLDsAvqav~~gGL- 211 (525)
T KOG1253|consen 174 ---------------MYEHPMVAKFFDVIDLDPY----GSP----------------------SPFLDSAVQAVRDGGL- 211 (525)
T ss_pred ---------------HHhccccccccceEecCCC----CCc----------------------cHHHHHHHHHhhcCCE-
Confidence 0111122367999999983 221 1358899999999885
Q ss_pred EEEeCC
Q 004775 232 VYSTCS 237 (731)
Q Consensus 232 VYSTCS 237 (731)
++.|||
T Consensus 212 L~vT~T 217 (525)
T KOG1253|consen 212 LCVTCT 217 (525)
T ss_pred EEEEec
Confidence 567888
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.64 E-value=0.024 Score=57.72 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
.|.+|||+|||+|--+... +.. +...|++.|+++-....+..|++.+|+ ++.++..|.
T Consensus 79 rgkrVLd~gagsgLvaIAa--a~a--------GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~ 136 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAA--ARA--------GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADL 136 (218)
T ss_pred ccceeeecccccChHHHHH--HHh--------hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccc
Confidence 4889999999999755443 332 256899999999999999999988875 456665543
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.035 Score=58.07 Aligned_cols=38 Identities=26% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN 125 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~ 125 (731)
+|..|||++|.+||+|..+++. +..+|+|+|+...-++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~----------gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR----------GAKHVYAVDVGYGQLH 116 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc----------CCcEEEEEEccCCccC
Confidence 6889999999999999998774 3579999999775544
No 234
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.44 E-value=0.038 Score=57.92 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=68.3
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+||.++||-|+...-|++.-. ++.-.|+|+|-++..+.+++.+....- .++....+|... |.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~-------n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~-~~~-------- 136 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP-------NNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS-PSL-------- 136 (264)
T ss_pred hheeeccCCCcccchhhhcCC-------CCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc-hhc--------
Confidence 899999999999888876532 235799999999999999988765432 223333333322 110
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEEE
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~-~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
........+|.|.+ |+. ...++ .-+.+.+.+..++|||||.|++.
T Consensus 137 --------~~~~~~~svD~it~---------------IFv------LSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 137 --------KEPPEEGSVDIITL---------------IFV------LSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred --------cCCCCcCccceEEE---------------EEE------EeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01123366776654 110 00111 22345788889999999999975
No 235
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.42 E-value=0.012 Score=53.18 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=40.5
Q ss_pred EeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCCCCCC
Q 004775 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSA 161 (731)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~~~~~~ 161 (731)
|+++++.|.-|+.+++.+... ..+.++++|..+. .+.....+++.+. .++.++..+...+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~---------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN------GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP---------- 63 (106)
T ss_dssp --------------------------------EEEESS-------------GGG-BTEEEEES-THHHHH----------
T ss_pred Ccccccccccccccccccccc------ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH----------
Confidence 567889999999999887652 1258999999985 2222233333443 357888777654210
Q ss_pred CccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
......||.|++|..=+ .....+-+..+++.|+|||.||+
T Consensus 64 ---------~~~~~~~dli~iDg~H~-----------------------~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 64 ---------SLPDGPIDLIFIDGDHS-----------------------YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ---------HHHH--EEEEEEES--------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ---------HcCCCCEEEEEECCCCC-----------------------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 11136899999998511 12234568889999999999986
No 236
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.38 E-value=0.073 Score=58.49 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~ 155 (731)
-.+..|||++||+|-.++-.|.+ +...|+|+|.+.-. ..+...++.++..+ +.++.+....+ .
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA----------GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi---~-- 122 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA----------GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI---E-- 122 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh----------CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE---e--
Confidence 35889999999999988877765 35799999987766 77788888888876 55655554442 1
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.+..++|.|++ -|.-. ..-+-...-.+|-.==+.|++||.+.=++
T Consensus 123 ----------------LP~eKVDiIvS---------------EWMGy----~Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 123 ----------------LPVEKVDIIVS---------------EWMGY----FLLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred ----------------cCccceeEEee---------------hhhhH----HHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 11378999986 22110 00001112223333346899999999888
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
|++.
T Consensus 168 a~l~ 171 (346)
T KOG1499|consen 168 ATLY 171 (346)
T ss_pred ceEE
Confidence 8864
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.25 E-value=0.38 Score=52.84 Aligned_cols=135 Identities=8% Similarity=-0.021 Sum_probs=82.3
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE--EecccccCCCcc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV--TNHEAQHFPGCR 153 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~v--t~~Da~~fp~~~ 153 (731)
+.++..++|+|||.|.||..|++.|.... ..-.-+++|+|...+..+..++..-..+.+.+ +.+|...-...
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~-----~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~- 147 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQK-----KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW- 147 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcC-----CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh-
Confidence 35778999999999999999999986421 12467999999999999888887333455555 34433221000
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIV 232 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~-lLKpGG~LV 232 (731)
+. ..........|+. |=|..|-+ -......+|++..+ .|+|||.|+
T Consensus 148 l~--------------~~~~~~~~r~~~f--lGSsiGNf-----------------~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 148 LK--------------RPENRSRPTTILW--LGSSIGNF-----------------SRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred cc--------------cccccCCccEEEE--eCccccCC-----------------CHHHHHHHHHHHHHhhCCCCCEEE
Confidence 00 0000122344443 22333321 12234567777777 899999999
Q ss_pred EEeCCCCCcCcHHHHHHHHH
Q 004775 233 YSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~ 252 (731)
... .-..+.++|..+-.
T Consensus 195 iG~---D~~k~~~~l~~AY~ 211 (319)
T TIGR03439 195 IGL---DGCKDPDKVLRAYN 211 (319)
T ss_pred Eec---CCCCCHHHHHHHhc
Confidence 863 44466777655543
No 238
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.10 E-value=0.029 Score=58.40 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=81.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+..+-.++||++||+|-..-.|-.+ ..+++++|+|..+++.+.+. |.-. .....++..|..
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~-----------a~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~--- 182 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM-----------ADRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLE--- 182 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH-----------HhhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhh---
Confidence 4455689999999999876666554 35789999999998766543 2110 112344444421
Q ss_pred CCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~-D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
......||.|.. || .....--..++.-+..+|++||.+.|
T Consensus 183 ----------------~~~~er~DLi~AaDV-----------------------l~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 183 ----------------DLTQERFDLIVAADV-----------------------LPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred ----------------hccCCcccchhhhhH-----------------------HHhhcchhhHHHHHHHhcCCCceEEE
Confidence 122368999863 22 11112224577888999999999999
Q ss_pred EeCCCCCcC------------cHHHHHHHHHHCCCcEEEEec
Q 004775 234 STCSMNPVE------------NEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 234 STCSl~p~E------------NEaVV~~~L~~~~g~~elvd~ 263 (731)
|.=++.-.- .|.-|...|..+| ++++.+
T Consensus 224 SvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~G--l~~i~~ 263 (287)
T COG4976 224 SVETLPDDGGFVLGPSQRYAHSESYVRALLAASG--LEVIAI 263 (287)
T ss_pred EecccCCCCCeecchhhhhccchHHHHHHHHhcC--ceEEEe
Confidence 987764332 3455666676665 555555
No 239
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.97 E-value=0.13 Score=52.93 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=35.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k 132 (731)
.+++.+++..+|++||-|.-.+|+|-..+ -...+++|+.+.++..+..+.+
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~---------~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG---------CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH-----------SEEEEEE-SHHHHHHHHHHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcC---------CcEEEEEEechHHHHHHHHHHH
Confidence 45788999999999999998888875532 3579999999999887766544
No 240
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=94.87 E-value=0.14 Score=55.94 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~ 156 (731)
.+..|||++||+|-.+..+|++ +...|+|++.+.-. ..++..++.+++ .+|.|+-+....+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA----------GA~~vYAvEAS~MA-qyA~~Lv~~N~~~~rItVI~GKiEdi------- 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA----------GAKKVYAVEASEMA-QYARKLVASNNLADRITVIPGKIEDI------- 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh----------CcceEEEEehhHHH-HHHHHHHhcCCccceEEEccCccccc-------
Confidence 4779999999999998887765 35799999986543 333444444443 3466655543332
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE--
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS-- 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS-- 234 (731)
.-+++.|+|+..| .|+|--|..+. +--.+|.++|||.|.+.=+
T Consensus 239 ---------------eLPEk~DviISEP----MG~mL~NERML----------------EsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 239 ---------------ELPEKVDVIISEP----MGYMLVNERML----------------ESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred ---------------cCchhccEEEecc----chhhhhhHHHH----------------HHHHHHHhhcCCCCcccCccc
Confidence 1137899999866 47664443322 2234566899999987532
Q ss_pred eCCCCCcCcHHHHHHHHHHC----CCcEEEEecC
Q 004775 235 TCSMNPVENEAVVAEILRKC----EGSVELVDVS 264 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~----~g~~elvd~s 264 (731)
---+.|--+|..-.+-..+. ...+--||++
T Consensus 284 diHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt 317 (517)
T KOG1500|consen 284 DIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLT 317 (517)
T ss_pred ceeecccchHHHHHHHHhhhhhhhhhccccccch
Confidence 22367888888766655542 2245566664
No 241
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.70 E-value=0.2 Score=51.56 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~-vt~~Da~~fp~~~~~~~ 157 (731)
+.+||.++||+|-.+.+.|..+. .-.-.--|.+......+...+...+.+|+. ....|+..-+-
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP---------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w------ 90 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP---------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW------ 90 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC---------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC------
Confidence 33799999999999999999874 344556689998888888877777776642 12223322100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE-EEeC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YSTC 236 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV-YSTC 236 (731)
....+.......||.|+| . ++.+ .... ..-..++..|.++|++||.|+ |---
T Consensus 91 -------~~~~~~~~~~~~~D~i~~----~---------N~lH------I~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 91 -------PWELPAPLSPESFDAIFC----I---------NMLH------ISPW-SAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred -------ccccccccCCCCcceeee----h---------hHHH------hcCH-HHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 000001123468999997 0 1100 0011 223568899999999999876 5444
Q ss_pred CCC---CcCcHHHHHHHHHHC
Q 004775 237 SMN---PVENEAVVAEILRKC 254 (731)
Q Consensus 237 Sl~---p~ENEaVV~~~L~~~ 254 (731)
..+ ..|.-+--.+-|+..
T Consensus 144 ~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 144 NRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred ccCCEeCCcHHHHHHHHHhcC
Confidence 432 233334446666653
No 242
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.64 E-value=0.069 Score=56.00 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=55.2
Q ss_pred hhhhcCCCCCC--EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----C-----Cc
Q 004775 70 PPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----T-----AN 138 (731)
Q Consensus 70 p~llLd~~pg~--~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg----~-----~n 138 (731)
.+.+..+++|. +|||+.||-|+=++.++.. .+.|+++|.|+--..++..-++|.. . .+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-----------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-----------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH-----------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-----------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 34456677775 9999999999999998853 2589999999999999988877642 1 36
Q ss_pred eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCC
Q 004775 139 LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 185 (731)
Q Consensus 139 i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~P 185 (731)
+.+.+.|+..|.. .....||+|.+||-
T Consensus 134 i~l~~~d~~~~L~--------------------~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 134 IQLIHGDALEYLR--------------------QPDNSFDVVYFDPM 160 (234)
T ss_dssp EEEEES-CCCHCC--------------------CHSS--SEEEE--S
T ss_pred CEEEcCCHHHHHh--------------------hcCCCCCEEEECCC
Confidence 8888998887532 12368999999994
No 243
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.64 E-value=0.24 Score=50.71 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=62.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH--------------HHc-----C-C-
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT--------------KRM-----C-T- 136 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~--------------kRl-----g-~- 136 (731)
+.-+||.++|++|-=+-.||-++.........-.-.|+|.|+|...++.+++-. ++. + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 446999999999976555554444300000011469999999999887764421 110 0 0
Q ss_pred -------CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004775 137 -------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (731)
Q Consensus 137 -------~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~ 209 (731)
..+.+..+|... .......||.|+| +|-=+ .=
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---------------------~~~~~~~fD~I~C-----------RNVlI---------YF 149 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---------------------PDPPFGRFDLIFC-----------RNVLI---------YF 149 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----------------------S------EEEEEE------------SSGG---------GS
T ss_pred eEChHHcCceEEEecccCC---------------------CCcccCCccEEEe-----------cCEEE---------Ee
Confidence 023333333222 0122478999998 22111 11
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 210 LHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
-...|.+++.+..+.|+|||.|+..
T Consensus 150 ~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 150 DPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 2467899999999999999999987
No 244
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.46 E-value=0.46 Score=56.94 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=84.2
Q ss_pred chhhhcC-CCCCCEEEeeccCcchHHHHHHHHhhcC--CCCC-CCCCeEEEEEeCCHHHHHHHHHHHH----------Hc
Q 004775 69 VPPLFLD-VQPDHFVLDMCAAPGSKTFQLLEIIHQS--TNPG-ALPNGMVIANDLDVQRCNLLIHQTK----------RM 134 (731)
Q Consensus 69 lp~llLd-~~pg~~VLDmCAAPGsKT~qLae~l~~~--~~~~-~~p~G~VvAnDid~~R~~~L~~n~k----------Rl 134 (731)
||..+.. -++.-+|||+|=|.|--++.+.+..... ..+. ....=.++++|.++-....|.+-.+ .+
T Consensus 47 l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l 126 (662)
T PRK01747 47 LPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQL 126 (662)
T ss_pred HHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHH
Confidence 4444432 2344699999999999888887766310 0000 0013478999987633222222211 11
Q ss_pred ---------CCC---------ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecC--CCCCCCcccc
Q 004775 135 ---------CTA---------NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV--PCSGDGTLRK 194 (731)
Q Consensus 135 ---------g~~---------ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~--PCSGdGtlrk 194 (731)
|.. ++.+..+|+...- ..-...||.|++|+ | .|
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~--------------------~~~~~~~d~~~lD~FsP-------~~ 179 (662)
T PRK01747 127 QAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELL--------------------PQLDARADAWFLDGFAP-------AK 179 (662)
T ss_pred HHhCCccCCCceEEEecCCcEEEEEEecCHHHHH--------------------HhccccccEEEeCCCCC-------cc
Confidence 111 1222334433210 00014699999996 5 68
Q ss_pred ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcE
Q 004775 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSV 258 (731)
Q Consensus 195 ~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~ 258 (731)
||++|.. .++....+++++||+++-.||+ ..|...|...|-.+
T Consensus 180 np~~W~~--------------~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~~~GF~v 222 (662)
T PRK01747 180 NPDMWSP--------------NLFNALARLARPGATLATFTSA-------GFVRRGLQEAGFTV 222 (662)
T ss_pred ChhhccH--------------HHHHHHHHHhCCCCEEEEeehH-------HHHHHHHHHcCCee
Confidence 9999874 5788888999999999844443 57899999887433
No 245
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.33 E-value=0.18 Score=55.67 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=65.0
Q ss_pred cCCCCCCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++||++|+=.++| -|..+.|+|..++ ..|+|+|++.+..+.+ +++|...++... |......+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g----------a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~ 226 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG----------AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAV 226 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC----------CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHh
Confidence 368999999999887 3445667766653 5899999999988765 457765444333 33332211
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.||.=+| ...+..++++|++||+||
T Consensus 227 ---------------------~~~~d~ii~tv~-----------------------------~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 227 ---------------------KEIADAIIDTVG-----------------------------PATLEPSLKALRRGGTLV 256 (339)
T ss_pred ---------------------HhhCcEEEECCC-----------------------------hhhHHHHHHHHhcCCEEE
Confidence 123999997433 123567889999999998
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
..
T Consensus 257 ~v 258 (339)
T COG1064 257 LV 258 (339)
T ss_pred EE
Confidence 64
No 246
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.32 E-value=0.33 Score=52.51 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=33.9
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
-+||..+|++|-=.-.||-++..... .....-.|+|.|+|...++.+++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~-~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLG-TAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhc-ccCCCcEEEEEECCHHHHHHHHhC
Confidence 59999999999765555544443100 000135799999999998877664
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.29 E-value=0.18 Score=48.33 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=47.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
...+...|+|+|||-|..+..|+.++.+. .+.-.|+|+|.++...+.+....++++
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~-----~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS-----SPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc-----CCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 34678899999999999999999977542 135699999999999999988888776
No 248
>PRK00536 speE spermidine synthase; Provisional
Probab=94.13 E-value=0.47 Score=50.70 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=76.3
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecc
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHE 145 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~D 145 (731)
|+++.-+.| .+||=++.|-|+-.-.++.. + ..|+-+|+|..-++++++-+-.+ .-+++.++..
T Consensus 65 ppl~~h~~p-k~VLIiGGGDGg~~REvLkh----------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 65 MGGCTKKEL-KEVLIVDGFDLELAHQLFKY----------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred HHHhhCCCC-CeEEEEcCCchHHHHHHHCc----------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 455555444 79999999999977766543 2 39999999999999888854432 2345555431
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
+. .....+||+|++|..- + ....+.+.+.|
T Consensus 132 ---~~--------------------~~~~~~fDVIIvDs~~----------------~-----------~~fy~~~~~~L 161 (262)
T PRK00536 132 ---LL--------------------DLDIKKYDLIICLQEP----------------D-----------IHKIDGLKRML 161 (262)
T ss_pred ---hh--------------------hccCCcCCEEEEcCCC----------------C-----------hHHHHHHHHhc
Confidence 10 0112579999999420 0 11234456789
Q ss_pred cCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 226 KpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
++||.+|.=+-|... ...++..+.+..+
T Consensus 162 ~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l~ 189 (262)
T PRK00536 162 KEDGVFISVAKHPLL--EHVSMQNALKNMG 189 (262)
T ss_pred CCCcEEEECCCCccc--CHHHHHHHHHHHH
Confidence 999999874443332 3555566665544
No 249
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.86 E-value=0.22 Score=53.18 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=53.0
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~ 160 (731)
+|+|+|||-|+.+.-+-++ + --.|.|+|+++..++...+|.. .+...|...+...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g---------~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~-------- 56 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G---------FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS-------- 56 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T---------EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH--------
T ss_pred cEEEEccCccHHHHHHHhc-C---------cEEEEEeecCHHHHHhhhhccc-------ccccccccccccc--------
Confidence 7999999999998877443 1 2378999999999999988864 5556676654211
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcccc
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk 194 (731)
.... .+|+|+.=+||.+--...+
T Consensus 57 ----------~l~~-~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 57 ----------DLPK-DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp ----------HHHH-T-SEEEEE---TTTSTTST
T ss_pred ----------cccc-cceEEEeccCCceEecccc
Confidence 1111 5999999999999776654
No 250
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.56 E-value=0.14 Score=53.13 Aligned_cols=106 Identities=19% Similarity=0.016 Sum_probs=64.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.-.+.||++||-|..|-+++--+ --.|-.+|..++.+..+++.+...+..-..+.+.-.+.|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~----------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV----------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-----------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------
T ss_pred CcceEEecccccchhHHHHHHHh----------cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-------
Confidence 46799999999999998874321 3589999999999998876432211122334444444431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....+||.|.| .|-...... ..-.+.|+|+.+.|+|||.||.=
T Consensus 118 --------------P~~~~YDlIW~------------------QW~lghLTD--~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 118 --------------PEEGKYDLIWI------------------QWCLGHLTD--EDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ----------------TT-EEEEEE------------------ES-GGGS-H--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------CCCCcEeEEEe------------------hHhhccCCH--HHHHHHHHHHHHhCcCCcEEEEE
Confidence 12368999966 776443221 23367899999999999999853
No 251
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.02 E-value=0.052 Score=58.44 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=45.9
Q ss_pred CCCEEEeeccCcchHHH-HHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccc
Q 004775 78 PDHFVLDMCAAPGSKTF-QLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEA 146 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~-qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da 146 (731)
.|+.|.||.||-|.+|+ .+..+ ++..|+|+|.++..++.|+++++.+++. ...++.+|-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a----------gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~ 254 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA----------GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN 254 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc----------CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc
Confidence 36899999999999998 44332 3579999999999999999999887653 344444443
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.91 E-value=0.69 Score=51.30 Aligned_cols=113 Identities=24% Similarity=0.276 Sum_probs=73.9
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCC-CeEEEEEeCCHHHHHHHHHHHH--HcC-----CCceEEEeccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALP-NGMVIANDLDVQRCNLLIHQTK--RMC-----TANLIVTNHEA 146 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p-~G~VvAnDid~~R~~~L~~n~k--Rlg-----~~ni~vt~~Da 146 (731)
.++.-.+||=++-|-|--.-+|... | -+.|+-+|.|++.++...|+.. ..+ -+++.|++.||
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellky----------P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA 355 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKY----------PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA 355 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhC----------CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH
Confidence 3456679999998888655544332 4 6899999999999999997753 222 25789999999
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
.+|-. ....+||.|++|-| +|+- +..+.-.+ .+.-+-+.+.|+
T Consensus 356 f~wlr--------------------~a~~~fD~vIVDl~---------DP~t-----ps~~rlYS---~eFY~ll~~~l~ 398 (508)
T COG4262 356 FQWLR--------------------TAADMFDVVIVDLP---------DPST-----PSIGRLYS---VEFYRLLSRHLA 398 (508)
T ss_pred HHHHH--------------------hhcccccEEEEeCC---------CCCC-----cchhhhhh---HHHHHHHHHhcC
Confidence 87632 11258999999988 2221 11111111 122333455789
Q ss_pred CCCEEEEE
Q 004775 227 VGGRIVYS 234 (731)
Q Consensus 227 pGG~LVYS 234 (731)
++|++|.-
T Consensus 399 e~Gl~VvQ 406 (508)
T COG4262 399 ETGLMVVQ 406 (508)
T ss_pred cCceEEEe
Confidence 99998854
No 253
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.75 E-value=0.43 Score=52.21 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=72.1
Q ss_pred hcCCCCCCEEEeeccCcchH-HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
...+++|++||=|+|||=+. |...|+.++ ...|+..|+++.|++++++ +|...+....+.. ....
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G---------A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~-~~~~ 229 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMG---------ASDVVITDLVANRLELAKK----FGATVTDPSSHKS-SPQE 229 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcC---------CCcEEEeecCHHHHHHHHH----hCCeEEeeccccc-cHHH
Confidence 34689999999999999665 555555554 5799999999999987654 7876554443322 1000
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
+ ... .........||..+- |||... -++.|+..+|.||++
T Consensus 230 ~--~~~----------v~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~r~gGt~ 269 (354)
T KOG0024|consen 230 L--AEL----------VEKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKATRSGGTV 269 (354)
T ss_pred H--HHH----------HHhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHhccCCEE
Confidence 0 000 000111234888874 888663 356678899999998
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
|..-|--
T Consensus 270 vlvg~g~ 276 (354)
T KOG0024|consen 270 VLVGMGA 276 (354)
T ss_pred EEeccCC
Confidence 8875543
No 254
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.74 E-value=0.43 Score=50.86 Aligned_cols=51 Identities=24% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEeCC------C------CCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 211 HSLQVQIAMRGISLLKVGGRIVYSTCS------M------NPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGG~LVYSTCS------l------~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+....+.+++..++|||||.||....- + ..-=||+.|.++|++.| +.+++.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG--~~i~~~ 237 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG--FDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC--CEEEec
Confidence 445677899999999999999965321 0 12348999999999886 566555
No 255
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.58 E-value=0.77 Score=49.45 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=61.8
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-HcCC-CceEEEecccccCCCcccCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-RMCT-ANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k-Rlg~-~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+|+=+|+||=-.|+.++...+. +...|+++|+|+.+..+.++-++ .++. ..+.+...|+...+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~-------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~------- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG-------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT------- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT-------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--------
T ss_pred ceEEEEcCCCcchHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-------
Confidence 49999999998888877665443 24578999999999999988777 4553 45777777765432
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|++-+- -|. -..--.+||.+..+.+++|.+|+|=
T Consensus 188 --------------~dl~~~DvV~lAal---Vg~------------------~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 188 --------------YDLKEYDVVFLAAL---VGM------------------DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp --------------GG----SEEEE-TT----S----------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred --------------cccccCCEEEEhhh---ccc------------------ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 11257999987321 010 0012257888999999999988873
No 256
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=92.54 E-value=0.048 Score=56.28 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=64.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.|.+.+|...+||.-|.|+.|..|++.- +.-.++|.|.|+-...++.+....+--+.+.........++.+
T Consensus 38 ~lspv~g~sf~DmTfGagGHt~~ilqk~---------se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 38 ILSPVRGRSFVDMTFGAGGHTSSILQKH---------SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred HcCCCCCceEEEEeccCCcchHHHHHhC---------cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHH
Confidence 4678999999999999999999998863 3578999999998877776665332222222222333333322
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG 190 (731)
.. +.......||-||.|--||+.-
T Consensus 109 ~~--------------~~gl~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 109 IA--------------DTGLLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred HH--------------HhCCCcCCcceEEeecCccccc
Confidence 10 1123447899999999999864
No 257
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.07 E-value=0.069 Score=59.89 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=54.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEecccccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFP 150 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~--~ni~vt~~Da~~fp 150 (731)
+||+.|-|+|||-|-.++-++.. .-+|+|||.++..++.|..|++...+ .++.+.|+||..|-
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK-----------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK-----------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc-----------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 68999999999999988877654 36899999999999999999986654 35899999999874
No 258
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.85 E-value=0.29 Score=49.14 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=31.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
-.+|+.|||-+||+|+ |+++|..|+ -.-+++|+++.-+++++
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~----------R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG----------RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT-----------EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC----------CeEEEEeCCHHHHHHhc
Confidence 3689999999999998 566666653 46899999999988765
No 259
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.35 E-value=3.5 Score=35.97 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=64.4
Q ss_pred EEeeccCcchHHHHHHHHhhcCCCCCCCCC-eEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc--CCCcccCCCC
Q 004775 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH--FPGCRANKNF 158 (731)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~-G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~--fp~~~~~~~~ 158 (731)
|||++||+|..+ .++.... . ..++++|.+...+..........+...+.+...+... ++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---------RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-------- 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---------CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--------
Confidence 999999999977 3333321 2 3788899999988884443333111113444444332 11
Q ss_pred CCCCcccccccccccc-ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 159 SSASDKGIESESNMGQ-LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
... ..||.+.....+ .|.. ...++....+.+++||.++++...
T Consensus 114 -------------~~~~~~~d~~~~~~~~--------------~~~~---------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 114 -------------FEDSASFDLVISLLVL--------------HLLP---------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred -------------CCCCCceeEEeeeeeh--------------hcCC---------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 111 368888321110 0000 456788888899999999999877
Q ss_pred CCCcCc
Q 004775 238 MNPVEN 243 (731)
Q Consensus 238 l~p~EN 243 (731)
......
T Consensus 158 ~~~~~~ 163 (257)
T COG0500 158 RDGLLE 163 (257)
T ss_pred CCCCcc
Confidence 655443
No 260
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.10 E-value=0.34 Score=52.91 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred EEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCC
Q 004775 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSA 161 (731)
Q Consensus 82 VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~ 161 (731)
|+|+|||.|+.+.-+-++ +--.|.|+|++...++...+|.. + .+...|...+..
T Consensus 1 vidLF~G~GG~~~Gl~~a----------G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~---------- 54 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----------GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISP---------- 54 (315)
T ss_pred CEEEecCccHHHHHHHHc----------CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhh----------
Confidence 689999999998776432 12467899999999998887642 2 223345444311
Q ss_pred CccccccccccccccccEEEecCCCCCCCcccc
Q 004775 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (731)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk 194 (731)
.....+|+++.-+||.+.=...+
T Consensus 55 ----------~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 55 ----------SDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred ----------hhCCCcCEEEecCCCcccchhcc
Confidence 00135899999999988765443
No 261
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=90.94 E-value=0.9 Score=47.07 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=64.9
Q ss_pred CccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe
Q 004775 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 143 (731)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~ 143 (731)
.++-.+.-.+....++..|-||+||-+- ||+.+.+ .-.|...|+-. .|-.||.
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~----la~~~~~--------~~~V~SfDLva---------------~n~~Vta 110 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAK----LAKAVPN--------KHKVHSFDLVA---------------PNPRVTA 110 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-H----HHHH--S-----------EEEEESS----------------SSTTEEE
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHH----HHHhccc--------CceEEEeeccC---------------CCCCEEE
Confidence 3344444444454556899999999865 4455432 23799999732 2224666
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
+|..+.|- ....+|++++=- |=.|| .| ...|..|.+
T Consensus 111 cdia~vPL---------------------~~~svDv~VfcL--SLMGT---------n~------------~~fi~EA~R 146 (219)
T PF05148_consen 111 CDIANVPL---------------------EDESVDVAVFCL--SLMGT---------NW------------PDFIREANR 146 (219)
T ss_dssp S-TTS-S-----------------------TT-EEEEEEES-----SS----------H------------HHHHHHHHH
T ss_pred ecCccCcC---------------------CCCceeEEEEEh--hhhCC---------Cc------------HHHHHHHHh
Confidence 77777652 236799888622 33344 12 357999999
Q ss_pred hccCCCEEEEE-eCCCCCcCcHHHHHHHHHHCCC
Q 004775 224 LLKVGGRIVYS-TCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 224 lLKpGG~LVYS-TCSl~p~ENEaVV~~~L~~~~g 256 (731)
.||+||.|... .+|- .+|-..-...+++.|-
T Consensus 147 vLK~~G~L~IAEV~SR--f~~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 147 VLKPGGILKIAEVKSR--FENVKQFIKALKKLGF 178 (219)
T ss_dssp HEEEEEEEEEEEEGGG---S-HHHHHHHHHCTTE
T ss_pred eeccCcEEEEEEeccc--CcCHHHHHHHHHHCCC
Confidence 99999998755 4443 3466666677777763
No 262
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.88 E-value=1.5 Score=47.18 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
--+||-++|++|-=.=.||-+|...........-.|+|.|+|.+-+..++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 459999999999543333333322100000124689999999998877654
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.62 E-value=0.34 Score=49.97 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=57.6
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+++| +.|+.++.+-||-+...|.++..- .+.|.|+++|++...+........-+ .++|.+..+|......+.
T Consensus 30 ~~kP-d~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~i~Gds~d~~~~~- 101 (206)
T PF04989_consen 30 ELKP-DLIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPHNRKAIESHPM-SPRITFIQGDSIDPEIVD- 101 (206)
T ss_dssp HH---SEEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHH-
T ss_pred HhCC-CeEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchhchHHHhhccc-cCceEEEECCCCCHHHHH-
Confidence 4455 489999999999998888877542 14799999999766553322222122 267888888765422111
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
... ..........|+.|+- ..+.-..+.|..-..++++|+++|.
T Consensus 102 -~v~-----------~~~~~~~~vlVilDs~-----------------------H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 102 -QVR-----------ELASPPHPVLVILDSS-----------------------HTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -TSG-----------SS----SSEEEEESS---------------------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred -HHH-----------HhhccCCceEEEECCC-----------------------ccHHHHHHHHHHhCccCCCCCEEEE
Confidence 000 0001123446777663 1122235567777889999999874
No 264
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.47 E-value=2.6 Score=41.02 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=63.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004775 113 MVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (731)
Q Consensus 113 ~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGt 191 (731)
+|+|+|+-...+...+++++..+.. ++.+.+..-..+... .....+|.|+-+- |-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-------------------i~~~~v~~~iFNL-----GY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-------------------IPEGPVDAAIFNL-----GY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---------------------S--EEEEEEEE-----SB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-------------------CccCCcCEEEEEC-----Cc
Confidence 5899999999999999999988875 477766554444321 0113678777532 22
Q ss_pred cccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCC---cCcHHHHHHHHHHC
Q 004775 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP---VENEAVVAEILRKC 254 (731)
Q Consensus 192 lrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p---~ENEaVV~~~L~~~ 254 (731)
|... ..........-...|..|+++|++||+|+...-.=++ +|-++ |.++++..
T Consensus 57 LPgg--------Dk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~a-v~~~~~~L 113 (140)
T PF06962_consen 57 LPGG--------DKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEA-VEEFLASL 113 (140)
T ss_dssp -CTS---------TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHH-HHHHHHTS
T ss_pred CCCC--------CCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHH-HHHHHHhC
Confidence 2110 0111223344567789999999999999887666666 34444 45666653
No 265
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.99 E-value=1.7 Score=47.40 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=83.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC-ceEEEeccc--ccCCCccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTNHEA--QHFPGCRA 154 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~-ni~vt~~Da--~~fp~~~~ 154 (731)
.-++||+++|.-..--.|+..+.+ =.++|.|+|+.-++.++++++++ ++. .|.+..... .-|..+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~---------W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~- 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG---------WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII- 172 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST-
T ss_pred ceEeecCCccHHHHHHHHhhhhcC---------CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh-
Confidence 458999999988776666655542 48999999999999999999998 664 465554322 2232221
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCC------ccccC------------hhhh------hhcccccccch
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG------TLRKA------------PDIW------RKWNVGLGNGL 210 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG------tlrk~------------pd~~------~~w~~~~~~~L 210 (731)
.....||..+|.||--.+. +-||. |..- ..|.++ +=
T Consensus 173 -----------------~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~G---GE 232 (299)
T PF05971_consen 173 -----------------QPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEG---GE 232 (299)
T ss_dssp -----------------T--S-EEEEEE-----SS--------------------------------TTTTHHHH---TH
T ss_pred -----------------cccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCC---cc
Confidence 1225899999999965442 22221 1100 001111 11
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC-cEEEEec
Q 004775 211 HSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDV 263 (731)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g-~~elvd~ 263 (731)
...-.+++.....+- .++..-||=+...+|=..+...|++.+. .+..++.
T Consensus 233 v~FV~rMI~ES~~~~---~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~ 283 (299)
T PF05971_consen 233 VAFVKRMIKESLQLK---DQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEM 283 (299)
T ss_dssp HHHHHHHHHHHHHHG---GGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHHHHHHHhC---CCcEEEeecccCcccHHHHHHHHHhcCCceEEEEEc
Confidence 234567788877653 3444445778889999999999998763 3555554
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=89.71 E-value=0.57 Score=50.31 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=37.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k 132 (731)
.+|+.|||-|+|+|+ |+.+|+.++ -..+++|+++.-+++++.++.
T Consensus 207 ~~GD~VLDPF~GSGT-T~~AA~~lg----------R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFT-TGAVAKASG----------RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcH-HHHHHHHcC----------CCEEEEeCCHHHHHHHHHHHH
Confidence 689999999999998 455555543 478999999999999988764
No 267
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.53 E-value=3.4 Score=42.49 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=34.1
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi 119 (731)
.+..++||++|+|+--|.|.+|..++-.++ |+|.|++.=-
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vg--------p~G~Vy~~~p 81 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVG--------PKGKVYAYVP 81 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcC--------CceeEEEecc
Confidence 345789999999999999999999988876 5899988643
No 268
>PRK04148 hypothetical protein; Provisional
Probab=89.41 E-value=0.74 Score=44.46 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=30.9
Q ss_pred CCCEEEeeccCcch-HHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 78 pg~~VLDmCAAPGs-KT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
.+.+|||+|+|.|. .+..|+++ ...|+|+|+++.+++.++++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-----------G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-----------GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHh
Confidence 46789999999996 44444432 35899999999987766543
No 269
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.82 E-value=9.9 Score=37.89 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=52.1
Q ss_pred ccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHH
Q 004775 173 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 173 ~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~ 252 (731)
....||+|+=.-|+.|.|.-. ...+......+-...+..|.++|+++|.|..+-|.-.|- +.--|.++-+
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~---------~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~lA~ 141 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSED---------GKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEELAA 141 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccc---------hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHHHH
Confidence 347899999999999955311 111222233456778999999999999999999998774 4434444434
Q ss_pred HCCCcEEEEec
Q 004775 253 KCEGSVELVDV 263 (731)
Q Consensus 253 ~~~g~~elvd~ 263 (731)
+.+ +.++..
T Consensus 142 ~~g--l~l~~~ 150 (166)
T PF10354_consen 142 EAG--LVLVRK 150 (166)
T ss_pred hcC--CEEEEE
Confidence 433 444443
No 270
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.41 E-value=2.9 Score=46.28 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCCCCEEEeeccCcchH-HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
..++.+|+=+||||=|. +.+++..++ ...|+++|.++.|++++++. .+...+.....+ .... .+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~G---------a~~Viv~d~~~~Rl~~A~~~---~g~~~~~~~~~~--~~~~-~~ 230 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLG---------ASVVIVVDRSPERLELAKEA---GGADVVVNPSED--DAGA-EI 230 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHHHHHh---CCCeEeecCccc--cHHH-HH
Confidence 45666999999999555 455555543 57999999999999977652 333211111111 0000 00
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
........||.|+- |||.. ..+..|++++++||++++.
T Consensus 231 --------------~~~t~g~g~D~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 231 --------------LELTGGRGADVVIE---AVGSP-------------------------PALDQALEALRPGGTVVVV 268 (350)
T ss_pred --------------HHHhCCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEEE
Confidence 00011246999985 77721 1577899999999999986
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
-
T Consensus 269 G 269 (350)
T COG1063 269 G 269 (350)
T ss_pred e
Confidence 3
No 271
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.08 E-value=11 Score=39.42 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=90.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~ 155 (731)
+.+.++.|+||=-|.-...|... .+..+++|.|+++.-+..++.++++.+. ..+.+..+|+ ++.+..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~---------~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~- 82 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN---------NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLEL- 82 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc---------CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCc-
Confidence 45667999999999988877654 2467999999999999999999998875 4577777776 443321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...+|.|.. .|.|- .+-..||..+...|+.=-++|.
T Consensus 83 ------------------~d~~d~ivI----AGMGG--------------------~lI~~ILee~~~~l~~~~rlIL-- 118 (226)
T COG2384 83 ------------------EDEIDVIVI----AGMGG--------------------TLIREILEEGKEKLKGVERLIL-- 118 (226)
T ss_pred ------------------cCCcCEEEE----eCCcH--------------------HHHHHHHHHhhhhhcCcceEEE--
Confidence 136888876 45552 3446789999998874446664
Q ss_pred CCCCCcCcHHHHHHHHHHCC
Q 004775 236 CSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~ 255 (731)
.|--++.-+.+.|..++
T Consensus 119 ---QPn~~~~~LR~~L~~~~ 135 (226)
T COG2384 119 ---QPNIHTYELREWLSANS 135 (226)
T ss_pred ---CCCCCHHHHHHHHHhCC
Confidence 78889999999999865
No 272
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.83 E-value=0.91 Score=48.40 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=49.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.||+.-.|++|+|||+|-||... .=+|+|+|--+-+..+ +....+.-...|+..|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr-----------~m~V~aVDng~ma~sL-------~dtg~v~h~r~DGfk~~P---- 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR-----------NMRVYAVDNGPMAQSL-------MDTGQVTHLREDGFKFRP---- 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc-----------ceEEEEeccchhhhhh-------hcccceeeeeccCccccc----
Confidence 568999999999999999999765 4589999975544332 233445555556555421
Q ss_pred CCCCCCCccccccccccccccccEEEecC
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDV 184 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~ 184 (731)
.....|=.+||.
T Consensus 267 -----------------~r~~idWmVCDm 278 (358)
T COG2933 267 -----------------TRSNIDWMVCDM 278 (358)
T ss_pred -----------------CCCCCceEEeeh
Confidence 236789999986
No 273
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.13 E-value=1.5 Score=43.67 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=37.8
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHH
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 251 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L 251 (731)
.+||+|++|||- -+. ..+.+....+-.++|+++.|+.+ .+.++|..+.+.|
T Consensus 85 ~~~d~vv~DPPF-------l~~---------------ec~~k~a~ti~~L~k~~~kii~~----Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 85 GKFDVVVIDPPF-------LSE---------------ECLTKTAETIRLLLKPGGKIILC----TGEEMEELIKKLL 135 (162)
T ss_pred CCceEEEECCCC-------CCH---------------HHHHHHHHHHHHHhCccceEEEe----cHHHHHHHHHHHh
Confidence 689999999994 111 23334455555567889999988 5788999999988
No 274
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.91 E-value=1.9 Score=47.33 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
..+|+|+|||-|+...-+-+. +--.+.|+|+++..+....+|... ..+...|...+..-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----------gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~----- 62 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----------GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA----- 62 (328)
T ss_pred CceEEeeccCCchHHHHHHhc----------CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-----
Confidence 358999999999988665432 124889999999999998887542 233444444332110
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~ 195 (731)
.....+|.|+.-+||-+.=...++
T Consensus 63 -------------~~~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 63 -------------LRKSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred -------------ccccCCCEEEeCCCCcchhhcCcc
Confidence 001179999999999887665444
No 275
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.50 E-value=1.4 Score=40.66 Aligned_cols=89 Identities=27% Similarity=0.375 Sum_probs=55.9
Q ss_pred cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccc
Q 004775 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIES 168 (731)
Q Consensus 89 PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~ 168 (731)
-|..++|+|..++ ..|++.|.+..|.+++ +++|...+ .+.....+.. .+ .
T Consensus 2 vG~~a~q~ak~~G----------~~vi~~~~~~~k~~~~----~~~Ga~~~--~~~~~~~~~~-~i-------------~ 51 (130)
T PF00107_consen 2 VGLMAIQLAKAMG----------AKVIATDRSEEKLELA----KELGADHV--IDYSDDDFVE-QI-------------R 51 (130)
T ss_dssp HHHHHHHHHHHTT----------SEEEEEESSHHHHHHH----HHTTESEE--EETTTSSHHH-HH-------------H
T ss_pred hHHHHHHHHHHcC----------CEEEEEECCHHHHHHH----Hhhccccc--cccccccccc-cc-------------c
Confidence 3778889988753 6899999999998765 45774332 3322221100 00 0
Q ss_pred ccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 169 ESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 169 ~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.......+|.|+- |+|.+ ..+..++++|++||++|....
T Consensus 52 -~~~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 52 -ELTGGRGVDVVID---CVGSG-------------------------DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -HHTTTSSEEEEEE---SSSSH-------------------------HHHHHHHHHEEEEEEEEEESS
T ss_pred -cccccccceEEEE---ecCcH-------------------------HHHHHHHHHhccCCEEEEEEc
Confidence 0011147999985 66643 257778999999999987533
No 276
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.86 E-value=6.6 Score=42.66 Aligned_cols=51 Identities=12% Similarity=-0.071 Sum_probs=33.5
Q ss_pred cCCCCCCEEEeeccCcch-HHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+||+-+ .+.|+|..+ ...|++.+.+..|.+++ +.+|...
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~----------G~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ----------GATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC----------CCeEEEEeCChHHHHHH----HHhCCce
Confidence 467899999988764332 234444432 23699999999987654 4577653
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.48 E-value=1.3 Score=51.04 Aligned_cols=160 Identities=20% Similarity=0.297 Sum_probs=85.3
Q ss_pred cccCCCC-CcceeeccchhhhcchhhHHHHHHHhhcccccCc-EEecCccccch----------hhhcCC--CCC--CEE
Q 004775 19 PLPWYPN-NLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGN-ITRQEAVSMVP----------PLFLDV--QPD--HFV 82 (731)
Q Consensus 19 ~~pw~p~-~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~-i~~Qd~~Smlp----------~llLd~--~pg--~~V 82 (731)
|+||-.. ..+|..+++-+.| ...+.-++|+.. .|. |.......|++ ..++.. ..| -.+
T Consensus 48 P~~WP~SRd~iW~~Nvph~~L---~~~K~~qnWv~~---~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~ 121 (506)
T PF03141_consen 48 PIPWPKSRDYIWYANVPHTKL---AEEKADQNWVRV---EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTA 121 (506)
T ss_pred CCCCCcccceeeecccCchHH---hhhcccccceee---cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEE
Confidence 5677543 4578777755443 334455666542 232 33344444443 111111 223 389
Q ss_pred EeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCC
Q 004775 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (731)
Q Consensus 83 LDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~ 162 (731)
||++||.|++++.|++. + .-+=.+..+|..+.-+..+.+ -|++.++-+ .-.+.+|
T Consensus 122 LDvGcG~aSF~a~l~~r--~------V~t~s~a~~d~~~~qvqfale----RGvpa~~~~-~~s~rLP------------ 176 (506)
T PF03141_consen 122 LDVGCGVASFGAYLLER--N------VTTMSFAPNDEHEAQVQFALE----RGVPAMIGV-LGSQRLP------------ 176 (506)
T ss_pred EeccceeehhHHHHhhC--C------ceEEEcccccCCchhhhhhhh----cCcchhhhh-hcccccc------------
Confidence 99999999999998764 0 001111223444443333222 244432211 1111222
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCC
Q 004775 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 163 ~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~ 239 (731)
+....||.|=| |.-.. .|.+..+. +|...-++|+|||++|+|.--++
T Consensus 177 ---------fp~~~fDmvHc----src~i---------~W~~~~g~--------~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 177 ---------FPSNAFDMVHC----SRCLI---------PWHPNDGF--------LLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ---------CCccchhhhhc----ccccc---------cchhcccc--------eeehhhhhhccCceEEecCCccc
Confidence 23467998874 44332 46655542 56667789999999999976666
No 278
>PRK13699 putative methylase; Provisional
Probab=85.41 E-value=1.6 Score=45.49 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
-.+|+.|||-++|+|+. +.+|..+ .-..+++|+++.-++.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt-~~aa~~~----------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGST-CVAALQS----------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHH-HHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 36899999999999984 4444443 246889999999999888887654
No 279
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.17 E-value=4 Score=44.71 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=33.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||=.++ |+....++++.... +...|++.|.+..|...+. ++|..
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 35789999998854 55444333333321 1225999999999988773 46653
No 280
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.08 E-value=7.6 Score=42.25 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
...+|++||=.+| |+-...+++++... +...|++.|.++.|++++. .+|...
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 4567999998765 55544444443321 1247999999999987664 467643
No 281
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=84.62 E-value=3.6 Score=42.56 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=72.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEecccccC-C
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-------TANLIVTNHEAQHF-P 150 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-------~~ni~vt~~Da~~f-p 150 (731)
.-.+.|++||=|+....|+.+ .|.-.|++.++--+-+...+.++..++ ..|+-+...++..| |
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~---------fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPK---------FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhcccc---------CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 446889999999988887765 367899999998887887777776554 45666666665544 3
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
++. ..+.-..++. +-.+|..|++-+... + .+..++.+-.-+|+.||.
T Consensus 132 n~f-------------------~kgqLskmff---------~fpdpHfk~~khk~r---i--i~~~l~~eyay~l~~gg~ 178 (249)
T KOG3115|consen 132 NFF-------------------EKGQLSKMFF---------LFPDPHFKARKHKWR---I--ITSTLLSEYAYVLREGGI 178 (249)
T ss_pred chh-------------------hhccccccee---------ecCChhHhhhhccce---e--echhHHHHHHhhhhcCce
Confidence 221 1111222221 122444444322222 1 234467777779999999
Q ss_pred EEEEeCC
Q 004775 231 IVYSTCS 237 (731)
Q Consensus 231 LVYSTCS 237 (731)
+.++|=.
T Consensus 179 ~ytitDv 185 (249)
T KOG3115|consen 179 LYTITDV 185 (249)
T ss_pred EEEEeeH
Confidence 8888643
No 282
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=83.69 E-value=1.4 Score=41.96 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=41.0
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
..||.|..|+- .-++||++|.. .++.+..+++++||+++-.||+ ..|...|...
T Consensus 49 ~~~Da~ylDgF-----sP~~nPelWs~--------------e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-----SPAKNPELWSE--------------ELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGGSSH--------------HHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-----CCcCCcccCCH--------------HHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 68999999962 12689998764 5788889999999988755453 4689999998
Q ss_pred CC
Q 004775 255 EG 256 (731)
Q Consensus 255 ~g 256 (731)
|-
T Consensus 103 GF 104 (124)
T PF05430_consen 103 GF 104 (124)
T ss_dssp TE
T ss_pred CC
Confidence 73
No 283
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.42 E-value=5.9 Score=43.24 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=30.4
Q ss_pred CCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeC---CHHHHHHHHHHHHHcCCC
Q 004775 76 VQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDL---DVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 76 ~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDi---d~~R~~~L~~n~kRlg~~ 137 (731)
+++|++||=.+||+ |..+.|+|..+ ...|++.+. ++.|.+++ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~----------G~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR----------GFEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 56899999887643 33344444443 136888886 67787755 456664
No 284
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.96 E-value=4 Score=47.23 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
..-+++|+|||-||.+.-+-.. + --.|.|+|+++..++...+|.. +.+...+.+.|...+....+...
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a-G---------~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~ 154 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI-G---------GQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGV 154 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc-C---------CEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCcccccccc
Confidence 3569999999999988876332 1 2378899999999998887731 11223344455544321100000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
+ ..............+|+++.-+||-+.=..
T Consensus 155 -~---~~~~~~~~~~~~p~~DvL~gGpPCQ~FS~A 185 (467)
T PRK10458 155 -S---DEEAAEHIRQHIPDHDVLLAGFPCQPFSLA 185 (467)
T ss_pred -c---hhhhhhhhhccCCCCCEEEEcCCCCccchh
Confidence 0 000000000011358999999999887544
No 285
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=82.71 E-value=7.9 Score=42.23 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=31.9
Q ss_pred CCCCCCEEEeeccCcchH-HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
.+++|++||=.+||+=|. +.|+|..+.. ...|+++|.++.|+++++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g--------~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYP--------ESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcC--------CCcEEEEeCcHhHHHHHh
Confidence 468899999988755342 3455554221 347999999999988764
No 286
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.63 E-value=4.9 Score=44.27 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ |+-...++++.... +...|++.|.++.|++++. .+|..
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~ 238 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAA------GASQVVAVDLNEDKLALAR----ELGAT 238 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHH----HcCCc
Confidence 45789999998765 44444333333321 1236999999999988664 46653
No 287
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=82.54 E-value=7.3 Score=41.82 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=35.8
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
.+|||++||||.-+..+.+.... -..++++|.|+..+.+....++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~--------~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPS--------LKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcC--------ceeeeeecCCHHHHHHHHHHHhcc
Confidence 48999999999866666666542 357999999999988777655543
No 288
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.31 E-value=0.0032 Score=67.66 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=39.6
Q ss_pred EEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcH
Q 004775 180 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 244 (731)
Q Consensus 180 IL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENE 244 (731)
||++.+|++.+++|.|+..|..|........+..|.+.+..+...++.++...|++|++.+.++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G 65 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNG 65 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTT
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCC
Confidence 56788999999999999988877655544444444444444444444445556777877655443
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=80.86 E-value=2.2 Score=45.91 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=34.9
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 174 ~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
..+||.|++|||.-. |.-..+. ...|.. ..........+..+.++||+||.|+.. |+.
T Consensus 25 ~~siDlIitDPPY~~-~~~~~~~--~~~~~~---~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 25 SESVDLIFADPPYNI-GKNFDGL--IEAWKE---DLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred cCcccEEEECCCccc-ccccccc--cccccH---HHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 368999999999743 2100011 111211 112223457889999999999998875 554
No 290
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=80.60 E-value=3 Score=43.44 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=35.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k 132 (731)
..-.++|-|||.|...+.+ -+||.. .=..|+|-|+|...++++..|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVl-GLLh~~------~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVL-GLLHRR------RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHH-HHHTGG------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHH-HHhhhH------HHHhHhcccCCHHHHHHHHHhhh
Confidence 3458999999999986665 566653 13689999999999999988875
No 291
>PHA01634 hypothetical protein
Probab=80.04 E-value=6.9 Score=37.79 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=39.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
.+.+|+|++|+-|+-++..+ +. ++..|+|++.+++....+.++++-+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~--l~--------GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFL--LR--------GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHh--hc--------CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 47899999999999777653 32 35799999999999999999887653
No 292
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.50 E-value=12 Score=39.78 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
.++++++||..++|+ |..++++|..+ ...|++.+.+..+...+.
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~----------G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM----------GAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc----------CCEEEEEcCCHHHHHHHH
Confidence 478899999964331 34444554443 245899999998887663
No 293
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=77.94 E-value=0.94 Score=46.81 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.+++||++||-|-.|.+++-.. -.|+|-++|..+...|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-----------eevyATElS~tMr~rL 150 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-----------EEVYATELSWTMRDRL 150 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-----------HHHHHHHhhHHHHHHH
Confidence 4799999999999999887654 2478888776655443
No 294
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=77.12 E-value=3.1 Score=44.87 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=92.9
Q ss_pred cccccCcEEecCccccchhhhc-CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 53 LENEIGNITRQEAVSMVPPLFL-DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 53 ~~~~~G~i~~Qd~~Smlp~llL-d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
+++..|.++.--.+|-+..+.- .--.|..|+=|+ ---. +.||-+|.+- .-.|..+|+|..-+....+-+
T Consensus 126 ~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDL-tsia~aLt~m-------pk~iaVvDIDERli~fi~k~a 195 (354)
T COG1568 126 HQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDL-TSIALALTGM-------PKRIAVVDIDERLIKFIEKVA 195 (354)
T ss_pred hhcccccccccceeeeeeeeccccCcCCCeEEEEc--Cchh-hHHHHHhcCC-------CceEEEEechHHHHHHHHHHH
Confidence 3445555555444444332211 011356788776 2233 3344455431 358889999999999999999
Q ss_pred HHcCCCceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch
Q 004775 132 KRMCTANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL 210 (731)
Q Consensus 132 kRlg~~ni~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L 210 (731)
+.+|..|+.+..+|.++ +|. .-..+||+++-|||-+-.|.
T Consensus 196 ee~g~~~ie~~~~Dlr~plpe--------------------~~~~kFDvfiTDPpeTi~al------------------- 236 (354)
T COG1568 196 EELGYNNIEAFVFDLRNPLPE--------------------DLKRKFDVFITDPPETIKAL------------------- 236 (354)
T ss_pred HHhCccchhheeehhcccChH--------------------HHHhhCCeeecCchhhHHHH-------------------
Confidence 99999999888888876 221 11268999999999433321
Q ss_pred HHHHHHHHHHHHhhccCCCEEE--EEeCCCCCcCcHHHHHH-HHHHCCCcEEEEec
Q 004775 211 HSLQVQIAMRGISLLKVGGRIV--YSTCSMNPVENEAVVAE-ILRKCEGSVELVDV 263 (731)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGG~LV--YSTCSl~p~ENEaVV~~-~L~~~~g~~elvd~ 263 (731)
+..|.|++..||--|.-- |-|-+-.+.--=--++. ++...| |-+-|+
T Consensus 237 ----k~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~g--vVITdi 286 (354)
T COG1568 237 ----KLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMG--VVITDI 286 (354)
T ss_pred ----HHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcC--eeeHhh
Confidence 346888999998763322 33344444443344555 444443 444443
No 295
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.82 E-value=14 Score=40.04 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=32.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+| |+....++++.... +...|++.+.+..|...+ +.+|..
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~----~~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVAL------GAKSVTAIDINSEKLALA----KSLGAM 207 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 45678999998854 55444433333321 123588999999998765 345653
No 296
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.83 E-value=14 Score=40.35 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=++||+ |.-++++|..+ ...|++.|.++.|+..+. .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~----------G~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM----------GAAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEEcCCHHHHHHHH----HhCCc
Confidence 4578899999998744 44445555443 236899999999987663 35653
No 297
>PLN02740 Alcohol dehydrogenase-like
Probab=74.81 E-value=16 Score=40.57 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=35.6
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+| |+-...+++++... +...|+++|.+..|+++++ .+|...
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARAR------GASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHC------CCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 46789999998864 55555555544331 1236999999999988774 467643
No 298
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.92 E-value=18 Score=38.16 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=32.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+.+.+|++||=++| |+-...+++++... +...|++.|.+..|..++. .+|..
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~ 167 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAA------GAARVVAADPSPDRRELAL----SFGAT 167 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCCc
Confidence 34568999998865 44444443333321 1235888999999987654 46653
No 299
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.69 E-value=16 Score=40.38 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=33.6
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+||+ |..++|+|..++ ...|++.|.+..|++++. ++|..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G---------~~~Vi~~~~~~~~~~~a~----~~Ga~ 232 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK---------ASRIIAIDINPAKFELAK----KLGAT 232 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH----HhCCC
Confidence 4678999999886532 223444444432 237999999999988763 46654
No 300
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.36 E-value=34 Score=40.18 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=36.2
Q ss_pred CCCCCCEEEeeccCcchH-HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
...|+++|+=++||+=|. ++++|..++ ..|+++|.++.|++.+ +.+|..
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG----------A~V~a~D~~~~rle~a----eslGA~ 210 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG----------AIVRAFDTRPEVAEQV----ESMGAE 210 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHH----HHcCCe
Confidence 467899999999998665 445555442 3799999999998754 446764
No 301
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=70.71 E-value=14 Score=40.96 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=64.7
Q ss_pred hcCCCCC----CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 73 FLDVQPD----HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 73 lLd~~pg----~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+++...| ...+|+++|-|.-+-+++... | .|-+++.|..-+-....++. .| |.-+-+|...
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f---------p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq 232 (342)
T KOG3178|consen 168 ILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY---------P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQ 232 (342)
T ss_pred hhhhhcccccCceEEEcCCcHhHHHHHHHHhC---------C--CCceeecCHHHHHhhhhhhc-CC---cceecccccc
Confidence 3444444 789999999999999987732 2 36677777776655555443 33 2222222211
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
. ..+-|+|++ .-+...|+.++ -.+||+|+.+.|+||
T Consensus 233 --~----------------------~P~~daI~m-------------kWiLhdwtDed-------cvkiLknC~~sL~~~ 268 (342)
T KOG3178|consen 233 --D----------------------TPKGDAIWM-------------KWILHDWTDED-------CVKILKNCKKSLPPG 268 (342)
T ss_pred --c----------------------CCCcCeEEE-------------EeecccCChHH-------HHHHHHHHHHhCCCC
Confidence 0 022345554 01123444433 367899999999999
Q ss_pred CEEEEEeCCC
Q 004775 229 GRIVYSTCSM 238 (731)
Q Consensus 229 G~LVYSTCSl 238 (731)
|.|+..-|=+
T Consensus 269 GkIiv~E~V~ 278 (342)
T KOG3178|consen 269 GKIIVVENVT 278 (342)
T ss_pred CEEEEEeccC
Confidence 9999876533
No 302
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=69.95 E-value=17 Score=39.11 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=33.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+.+++|++||=.++ |+-...+++++... +...|++.+.+..|...+. .+|..
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~------G~~~vi~~~~~~~~~~~~~----~~ga~ 210 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARAL------GAEDVIGVDPSPERLELAK----ALGAD 210 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HhCCC
Confidence 46788999998854 66555554444331 1224999999999987653 45653
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=69.91 E-value=19 Score=38.75 Aligned_cols=42 Identities=10% Similarity=-0.126 Sum_probs=25.3
Q ss_pred CCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.++++||=++||+ |..++|+|..++ ...|++.|.+..|+..+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G---------~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG---------GSPPAVWETNPRRRDGA 185 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHhh
Confidence 3577888775432 333455554432 23577889988887644
No 304
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=67.73 E-value=22 Score=39.87 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeecc-C-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
..+++|++||=.++ | -|-.++|+|..++. +...|++.|.+..|++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~-------g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPI-------GPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhccc-------CCceEEEEcCCHHHHHHHHHh
Confidence 45789999987753 3 34445555554321 124799999999999877653
No 305
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=67.16 E-value=34 Score=34.55 Aligned_cols=128 Identities=21% Similarity=0.232 Sum_probs=67.4
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH------------HHHcC-CCceEEEecccccCCCccc
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ------------TKRMC-TANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n------------~kRlg-~~ni~vt~~Da~~fp~~~~ 154 (731)
|-|.-.+-+|..+... .-.|+++|+++.+++.+.+- +++.. ..++.++..
T Consensus 7 GlGyvGl~~A~~lA~~-------G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~---------- 69 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEK-------GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTD---------- 69 (185)
T ss_dssp --STTHHHHHHHHHHT-------TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESE----------
T ss_pred CCCcchHHHHHHHHhC-------CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhh----------
Confidence 5555555555555542 24899999999999877532 11111 122222210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
........|.+++-+|.--+. ...| .+..+ ...+....+.|++|-.+|+
T Consensus 70 ---------------~~~ai~~adv~~I~VpTP~~~--~~~~------------Dls~v-~~a~~~i~~~l~~~~lvV~- 118 (185)
T PF03721_consen 70 ---------------IEEAIKDADVVFICVPTPSDE--DGSP------------DLSYV-ESAIESIAPVLRPGDLVVI- 118 (185)
T ss_dssp ---------------HHHHHHH-SEEEE----EBET--TTSB------------ETHHH-HHHHHHHHHHHCSCEEEEE-
T ss_pred ---------------hhhhhhccceEEEecCCCccc--cCCc------------cHHHH-HHHHHHHHHHHhhcceEEE-
Confidence 001124578888877632222 1111 22222 3456666777888555555
Q ss_pred eCCCCCcCcHHHHHHHHHHCCC---cEEEEec
Q 004775 235 TCSMNPVENEAVVAEILRKCEG---SVELVDV 263 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g---~~elvd~ 263 (731)
-+|+.|--.+.++..+|++.++ .|.+.-.
T Consensus 119 ~STvppGtt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 119 ESTVPPGTTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp SSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred ccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence 5889999999999999998764 4666554
No 306
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=67.10 E-value=17 Score=39.89 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=35.6
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+|+ -|..+.|+|..++ ..|++.+.+..+...++. .+|...
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G----------~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG----------CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 357899999887762 4556667766642 368999999888776542 366643
No 307
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.39 E-value=11 Score=37.83 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=41.1
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
+|.|+.|||.-..-.- .....+.. ..............+..+.++||+||.++.. |+-..... .++..+++..+
T Consensus 1 VdliitDPPY~~~~~~-~~~~~~~~--~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g- 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYFDYGD--NKNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFG- 74 (231)
T ss_dssp EEEEEE---TSSSCS------CSCH--CCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHT-
T ss_pred CCEEEECCCCCCCCCc-chhhhccC--CCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhh-
Confidence 4899999996443320 00000000 0111233344677899999999999997654 55543333 35666666655
Q ss_pred cEEEEec
Q 004775 257 SVELVDV 263 (731)
Q Consensus 257 ~~elvd~ 263 (731)
.+.+.+.
T Consensus 75 ~~~~~~~ 81 (231)
T PF01555_consen 75 GFFLRNE 81 (231)
T ss_dssp T-EEEEE
T ss_pred hhheecc
Confidence 4555443
No 308
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.33 E-value=25 Score=38.97 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=43.5
Q ss_pred CCCCCCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 75 DVQPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 75 d~~pg~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
++.||.+|-=.++| -|+.+.|+|.+|+ -+|+++|.+. +|-+ .+++||...+++...|...
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG----------~rV~vis~~~~kkee----a~~~LGAd~fv~~~~d~d~ 239 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG----------MRVTVISTSSKKKEE----AIKSLGADVFVDSTEDPDI 239 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC----------cEEEEEeCCchhHHH----HHHhcCcceeEEecCCHHH
Confidence 46789887666654 7889999999985 4899999987 5543 3467898877766555443
No 309
>PLN02827 Alcohol dehydrogenase-like
Probab=65.28 E-value=28 Score=38.64 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=33.7
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||=.++ |+-...++++.... +...|++.|.+..|.+.+ +.+|..
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a----~~lGa~ 240 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLR------GASQIIGVDINPEKAEKA----KTFGVT 240 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 45789999998854 55554444444321 123688999999887765 446764
No 310
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=64.70 E-value=7 Score=35.77 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=52.0
Q ss_pred CccEEEEceeeeEEEecCCCCCCcccceeeccchhhhhhhcccCcEEEcCHHHHHHHhhcCCCCccCCCChHHHHHHhcC
Q 004775 555 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 634 (731)
Q Consensus 555 ~~lkii~~GvK~F~rq~~~~~~~~~c~~Ri~~eGl~~i~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~e~~~~~~~l 634 (731)
++|||+..|+++=+... =+|+.++.++..+.+.-.+++|.++.++.+..|..+.+..+. -
T Consensus 11 ~~l~v~r~Gl~lg~~~k--------~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~------------~ 70 (102)
T PF13636_consen 11 PGLKVLRAGLYLGEIKK--------NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP------------P 70 (102)
T ss_dssp TTSEECECSEEEEEEET--------TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-------------
T ss_pred CCCeEEecCcEeeeEeC--------CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC------------C
Confidence 57999999999988752 289999999999999988999999999999999876655432 1
Q ss_pred CCceEEEEEe
Q 004775 635 MMGCCVIVLS 644 (731)
Q Consensus 635 ~~G~~vl~~~ 644 (731)
..|=++|.++
T Consensus 71 ~~G~vlv~~~ 80 (102)
T PF13636_consen 71 DKGWVLVTYE 80 (102)
T ss_dssp -EEEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 3577777776
No 311
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=63.23 E-value=29 Score=37.19 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=33.0
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+|+ -|..++|+|..+ ...|++.+.+..+...+ +.+|..
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~----------G~~Vi~~~~s~~~~~~~----~~lGa~ 185 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK----------GCKVVGAAGSDEKVAYL----KKLGFD 185 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH----HHcCCC
Confidence 467899999977653 344455555543 23689999888887666 346764
No 312
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=62.14 E-value=41 Score=36.92 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=30.0
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
..+++|++||=.++|+ |..+.++|..++ ...|++.|.+..+...+.
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G---------~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG---------CTTIIAVDIVDSRLELAK 228 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHH
Confidence 4578899999885422 333444444432 346999999998887654
No 313
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=61.65 E-value=53 Score=34.63 Aligned_cols=106 Identities=16% Similarity=0.084 Sum_probs=61.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
..|.+||.++=|-|-..+.+-+. +--.-+-++.++.-++.++...=+ ...|+++..+-=++..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~----------~p~~H~IiE~hp~V~krmr~~gw~-ek~nViil~g~WeDvl------ 162 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA----------PPDEHWIIEAHPDVLKRMRDWGWR-EKENVIILEGRWEDVL------ 162 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc----------CCcceEEEecCHHHHHHHHhcccc-cccceEEEecchHhhh------
Confidence 57899999999988766655333 123344567777776666554311 1346666644222210
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.......||-|+-|.= + .+...-+..-+++.++|||||.+-|.
T Consensus 163 -------------~~L~d~~FDGI~yDTy-----------------~-----e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 163 -------------NTLPDKHFDGIYYDTY-----------------S-----ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred -------------ccccccCcceeEeech-----------------h-----hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 0112356999998862 0 01111122344899999999977664
No 314
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.40 E-value=55 Score=33.31 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|+|+...+++..+... .-.|++.+.+......+...++..+ .++.+...|..+
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKE-------GAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 34566 4455788899999887652 2478999999888877766665544 345556666554
No 315
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=59.71 E-value=17 Score=42.33 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHH---HHHCCCcEEEEec
Q 004775 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEI---LRKCEGSVELVDV 263 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~---L~~~~g~~elvd~ 263 (731)
-..||...=+.|+|||.++.- ++-+|+..+ ++.......+++.
T Consensus 446 ~~~illEmDRILRP~G~~iiR-------D~~~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIR-------DTVDVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEe-------ccHHHHHHHHHHHHhCcceEEEEec
Confidence 356888889999999999886 555555444 3333334445444
No 316
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=59.02 E-value=56 Score=35.87 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=+++ |+-...++++.... +...|+++|.+..|...+. .+|..
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~------G~~~Vi~~~~~~~~~~~~~----~~ga~ 231 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIA------GASRIIGVDINEDKFEKAK----EFGAT 231 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999998753 55544444433321 1227999999999987763 35654
No 317
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=59.01 E-value=37 Score=36.43 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=28.3
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
..+++|++||-.++|. |.-+.++|..++ .+.|++++.+..+...+.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g---------~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG---------AARIIAVDSNPERLDLAK 209 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEeCCHHHHHHHH
Confidence 4567899999964321 333444444421 247888888888876554
No 318
>PRK13699 putative methylase; Provisional
Probab=58.34 E-value=44 Score=34.91 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=40.3
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 174 ~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
..++|.|+.|||.- .|.-.+.-. .+. ...........+..+.++||+||.++ +-|+.+. -..+..++++
T Consensus 18 d~SVDLIiTDPPY~-i~~~~~~~~---~~~---~~~~~ew~~~~l~E~~RVLKpgg~l~-if~~~~~---~~~~~~al~~ 86 (227)
T PRK13699 18 DNAVDFILTDPPYL-VGFRDRQGR---TIA---GDKTDEWLQPACNEMYRVLKKDALMV-SFYGWNR---VDRFMAAWKN 86 (227)
T ss_pred ccccceEEeCCCcc-cccccCCCc---ccc---cccHHHHHHHHHHHHHHHcCCCCEEE-EEecccc---HHHHHHHHHH
Confidence 47899999999984 221100000 000 01122334578899999999988765 4577643 2334455565
Q ss_pred CC
Q 004775 254 CE 255 (731)
Q Consensus 254 ~~ 255 (731)
.|
T Consensus 87 ~G 88 (227)
T PRK13699 87 AG 88 (227)
T ss_pred CC
Confidence 54
No 319
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=57.47 E-value=58 Score=36.12 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcC------CCC-CCCCCeEEEEEeCCHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQS------TNP-GALPNGMVIANDLDVQ 122 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~------~~~-~~~p~G~VvAnDid~~ 122 (731)
--+|+|+||+.|.-|+.++..+-.. ... ...|.-.|+-||.=..
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N 67 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN 67 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc
Confidence 3599999999999998877654221 000 1234568999998433
No 320
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=57.31 E-value=54 Score=35.46 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=67.0
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
...|-||+||-+- ||+.. .-.|++.|+- ..|-.|+.+|..+.|.
T Consensus 181 ~~vIaD~GCGEak----iA~~~----------~~kV~SfDL~---------------a~~~~V~~cDm~~vPl------- 224 (325)
T KOG3045|consen 181 NIVIADFGCGEAK----IASSE----------RHKVHSFDLV---------------AVNERVIACDMRNVPL------- 224 (325)
T ss_pred ceEEEecccchhh----hhhcc----------ccceeeeeee---------------cCCCceeeccccCCcC-------
Confidence 4578899999764 43321 3468888862 2234566677766552
Q ss_pred CCCCccccccccccccccccEEEecCCC-CCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPC-SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PC-SGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
++.+.|++++ | |=.|| + -...+..|.+.||+||.+-..--+
T Consensus 225 --------------~d~svDvaV~---CLSLMgt-----------------n----~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 --------------EDESVDVAVF---CLSLMGT-----------------N----LADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred --------------ccCcccEEEe---eHhhhcc-----------------c----HHHHHHHHHHHhccCceEEEEehh
Confidence 2367898876 3 22343 1 134688999999999987654332
Q ss_pred CCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 238 MNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 238 l~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
+-..+-.-...+|..+|-.+.-.|++
T Consensus 267 -SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 267 -SRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -hhcccHHHHHHHHHHcCCeeeehhhh
Confidence 22334444666777777555555553
No 321
>PRK12939 short chain dehydrogenase; Provisional
Probab=57.05 E-value=69 Score=32.42 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=40.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|.|+...+++..+... .-.|++.+.+...+..+...++..+ .++.+...|..+
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEA-------GATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 56677 4555788888888887652 2368888888887776665554433 346666666654
No 322
>PRK06181 short chain dehydrogenase; Provisional
Probab=56.88 E-value=77 Score=32.58 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=39.5
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+|| +.-|+|+...+++..+... ...|++.+.+......+.+.++..+. ++.+...|..+
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~-------g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARA-------GAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSD 61 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 455 3446678888888877542 35899999988777766666655543 56666666654
No 323
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=56.41 E-value=1e+02 Score=32.76 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=34.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|.+||=.+ .|+-...+++++... ...|++.+.+.++...++. +|..
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~-------G~~vi~~~~~~~~~~~~~~----~g~~ 201 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALT-------GPDVVLVGRHSEKLALARR----LGVE 201 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHHHH----cCCc
Confidence 4578899998874 466666665555431 2358899988888876654 5654
No 324
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=56.34 E-value=1.1e+02 Score=34.84 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCEEEeeccCcchHHHHHHHHh----hcCCC--CCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEII----HQSTN--PGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l----~~~~~--~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
.-.|+|++||+|.-|+.++..+ ..... ....|.-.|+-||.-..-...|-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~ 121 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQL 121 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhh
Confidence 5689999999998887665433 22100 0113456888888854444444333
No 325
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=56.08 E-value=36 Score=36.42 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=37.7
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+.+.++|||++||-==.++-. |+. .+...++|.|+|...++.+.+-+..++.+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~---~~~------~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPW---MPE------APGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHT---TTS------STT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred cCCCCchhhhhhccCCceehhh---ccc------CCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 4455789999999977655543 222 23569999999999999999999999864
No 326
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=55.67 E-value=67 Score=35.32 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=34.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ |+....+++++... +...|++.|.+..|+..+. .+|..
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~------G~~~vi~~~~~~~~~~~~~----~lGa~ 233 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAA------GASRIIGIDINPDKFELAK----KFGAT 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999998854 55544444444321 1236999999999987663 46754
No 327
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=55.07 E-value=49 Score=35.57 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCCC--CEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQPD--HFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~pg--~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.+++| ++||=.+|+ -|..+.|+|..++ ...|++.+.+..+...+.. .+|...
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G---------~~~Vi~~~~s~~~~~~~~~---~lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG---------CSRVVGICGSDEKCQLLKS---ELGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHH---hcCCcE
Confidence 46666 899877652 3444555655532 1269999999888776654 267644
No 328
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.50 E-value=99 Score=32.06 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=66.3
Q ss_pred CCCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.|..||=.+|++| +....+++.+... ...|+.++.+.+....+.+..+.++ .+.+...|..+...+.-
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~-------G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~-- 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL-------GAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEA-- 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc-------CCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHH--
Confidence 3678898998884 8888888877642 2467777877654433443333333 23345556554322110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCC----Cccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
............|.++..+-.... +.+. -.++.|.+ .-..++.. ...+++.++.+++.+|+|
T Consensus 78 ---------~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~---~~~vN~~~-~~~~~~~~~p~m~~~g~I 144 (258)
T PRK07533 78 ---------VFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFAL---AMDVSCHS-FIRMARLAEPLMTNGGSL 144 (258)
T ss_pred ---------HHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHH---HHhhhhHH-HHHHHHHHHHHhccCCEE
Confidence 000001122568988876522110 1111 12222322 11112211 234566667777778888
Q ss_pred EEE
Q 004775 232 VYS 234 (731)
Q Consensus 232 VYS 234 (731)
|..
T Consensus 145 i~i 147 (258)
T PRK07533 145 LTM 147 (258)
T ss_pred EEE
Confidence 764
No 329
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.40 E-value=89 Score=32.52 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=36.5
Q ss_pred CCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH---HHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDV---QRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~---~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.|..+|=.+|++ ++....++..+... ...|+..+.+. .+++.+.. .+...++.+...|..+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~-------G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA-------GAKLVFTYAGERLEKEVRELAD---TLEGQESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEecCcccchHHHHHHHH---HcCCCceEEEecCCCC
Confidence 367888888874 78888988888752 24676665542 33443333 2322345555666654
No 330
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=54.08 E-value=52 Score=35.34 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=27.9
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.+.+++|.+||-.++|. |..+.++|..++ ...|++.+.+..+...+
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G---------~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG---------AKRVIAVDIDDEKLAVA 200 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHH
Confidence 44678899999984322 333444444432 22488888777776655
No 331
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=53.64 E-value=19 Score=40.72 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=42.5
Q ss_pred CcEEecC-ccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 58 GNITRQE-AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 58 G~i~~Qd-~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
+.+|-|- .-.-+-..+|++.|+++||=+++|-.. ++.+ |.. ....|+|+|+++.-.++|.=.+
T Consensus 14 ~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N-~L~y---L~~-------~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 14 GLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCN-ALDY---LLA-------GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred ceeeccccCCcHHHHHHhCCCCCCeEEEEccCCch-HHHH---Hhc-------CCceEEEEeCCHHHHHHHHHHH
Confidence 5555551 223344567899999999999887554 3333 222 1479999999999888875443
No 332
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=53.52 E-value=51 Score=30.17 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=47.5
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC-CC-CcCcHHHHHHHHHH
Q 004775 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MN-PVENEAVVAEILRK 253 (731)
Q Consensus 176 ~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS-l~-p~ENEaVV~~~L~~ 253 (731)
+||.|+-.||......+........ ....+..-.+.+|+++| +|.+.|-|=+ +. ..+.-....+.|-.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~--------~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKK--------KKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhccc--------ccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 6999999999866554322111100 12334456788899999 8999887655 33 45555566666654
Q ss_pred CCCcEEEEec
Q 004775 254 CEGSVELVDV 263 (731)
Q Consensus 254 ~~g~~elvd~ 263 (731)
...-..+++.
T Consensus 72 ~~~i~~i~~f 81 (106)
T PF07669_consen 72 NTNIKKIIDF 81 (106)
T ss_pred CCCeeEEEEC
Confidence 4333455555
No 333
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=53.49 E-value=22 Score=39.48 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=36.9
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
++.+++|.+||..++|+ |..+.++|..++ .+.|+++|.+..+.+.++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g---------~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG---------AERVIAIDRVPERLEMARS 227 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHH
Confidence 45678999999997766 666777777643 3469999999999887665
No 334
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=52.97 E-value=1.5e+02 Score=34.06 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=66.1
Q ss_pred cCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH--------Hc-CCCceEEEecccccCCCcccCCC
Q 004775 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK--------RM-CTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k--------Rl-g~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
-|-|.-.+-+|..+.. .-.|+++|+++.+++.|.+-.. ++ ...++.++.. .
T Consensus 12 IGlGyvGlpmA~~la~--------~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~-~----------- 71 (425)
T PRK15182 12 IGLGYVGLPLAVEFGK--------SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSE-I----------- 71 (425)
T ss_pred ECcCcchHHHHHHHhc--------CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeC-H-----------
Confidence 3677777777777653 2479999999999988763211 00 0001111110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
..-...|.|++-+|=.-+.. ..++ +..+ ........+.|++|..+ .-..|
T Consensus 72 --------------~~~~~advvii~Vptp~~~~--~~~d------------l~~v-~~a~~~i~~~l~~g~lV-I~~ST 121 (425)
T PRK15182 72 --------------EKIKECNFYIITVPTPINTY--KQPD------------LTPL-IKASETVGTVLNRGDIV-VYEST 121 (425)
T ss_pred --------------HHHcCCCEEEEEcCCCCCCC--CCcc------------hHHH-HHHHHHHHHhcCCCCEE-EEecC
Confidence 01135688888666211110 0111 1111 11233445677886554 44588
Q ss_pred CCCcCcHHHHHHHHHHC
Q 004775 238 MNPVENEAVVAEILRKC 254 (731)
Q Consensus 238 l~p~ENEaVV~~~L~~~ 254 (731)
+.|...++++..++++.
T Consensus 122 v~pgtt~~~~~~~l~~~ 138 (425)
T PRK15182 122 VYPGCTEEECVPILARM 138 (425)
T ss_pred CCCcchHHHHHHHHHhc
Confidence 99999999999999863
No 335
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=52.65 E-value=27 Score=40.10 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=46.4
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
.|||+++|+|-.+..++... .-.|+|+++=..+...+++-....|. .+|.++|.-...
T Consensus 69 ~vLdigtGTGLLSmMAvrag----------aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG----------ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc----------CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 69999999998877766552 34799999999999999999988885 578777654433
No 336
>PRK05599 hypothetical protein; Provisional
Probab=52.54 E-value=91 Score=32.11 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=41.9
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
.||=.+ |.++....++..+.. ...|+..+.+..+++.+.+.++..+...+.+...|..+.
T Consensus 2 ~vlItG-as~GIG~aia~~l~~--------g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 2 SILILG-GTSDIAGEIATLLCH--------GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61 (246)
T ss_pred eEEEEe-CccHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH
Confidence 355344 456678888887753 357888889999998888877766654566667776654
No 337
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=52.47 E-value=28 Score=39.14 Aligned_cols=111 Identities=21% Similarity=0.228 Sum_probs=69.7
Q ss_pred cchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccc
Q 004775 68 MVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEA 146 (731)
Q Consensus 68 mlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da 146 (731)
.+..+....+|++.++|+.|+-|+-+..++.. . .-.++++|.+.-.+.+........++.+ ..+..+|.
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~---------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~ 169 (364)
T KOG1269|consen 100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-K---------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF 169 (364)
T ss_pred chHHHhhcCcccccccccCcCcCchhHHHHHh-c---------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh
Confidence 34556667889999999999999988888654 2 3467788888777766655554444432 12233443
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEE-ecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVL-CDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL-~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
...| +....||.+- +|+-|- .|+. ...+.+..+.+
T Consensus 170 ~~~~---------------------fedn~fd~v~~ld~~~~-------~~~~----------------~~~y~Ei~rv~ 205 (364)
T KOG1269|consen 170 GKMP---------------------FEDNTFDGVRFLEVVCH-------APDL----------------EKVYAEIYRVL 205 (364)
T ss_pred hcCC---------------------CCccccCcEEEEeeccc-------CCcH----------------HHHHHHHhccc
Confidence 3322 2346788775 344331 1111 23566777889
Q ss_pred cCCCEEE
Q 004775 226 KVGGRIV 232 (731)
Q Consensus 226 KpGG~LV 232 (731)
||||..+
T Consensus 206 kpGG~~i 212 (364)
T KOG1269|consen 206 KPGGLFI 212 (364)
T ss_pred CCCceEE
Confidence 9999875
No 338
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.45 E-value=69 Score=34.67 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=31.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ |+....++++.... +...|++.|.+.+|..+++ .+|..
T Consensus 162 ~~~~~g~~vlI~g~--g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (351)
T cd08285 162 ANIKLGDTVAVFGI--GPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAK----EYGAT 213 (351)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCc
Confidence 45678999998843 44433333332221 1346999999998877664 46653
No 339
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.92 E-value=1.1e+02 Score=32.57 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=29.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
...+++|.+||-.+ + |+-...++++.... +-..|++.+.+.++...+
T Consensus 154 ~~~~~~g~~vlI~g-~-g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 154 LLGIKPGDSVLVFG-A-GPIGLLLAQLLKLN------GASRVTVAEPNEEKLELA 200 (334)
T ss_pred hcCCCCCCEEEEEC-C-CHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHH
Confidence 34678899999994 3 54433333333321 112488888888887766
No 340
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=51.30 E-value=74 Score=35.76 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=31.4
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ |+....++++.... +...|++.|.+..|+.+++ ++|..
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~----~~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIAGA--GPVGLAAAASAQLL------GAAVVIVGDLNPARLAQAR----SFGCE 232 (393)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHH----HcCCe
Confidence 35788999987544 55444443333321 1235677899888887664 46763
No 341
>PRK08339 short chain dehydrogenase; Provisional
Probab=51.05 E-value=2e+02 Score=29.85 Aligned_cols=63 Identities=6% Similarity=0.064 Sum_probs=42.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
|.++|=.+| .|+....+++.+... ...|+.++.+..++..+.+.++.....++.+...|..+.
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 8 GKLAFTTAS-SKGIGFGVARVLARA-------GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR 70 (263)
T ss_pred CCEEEEeCC-CCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 556665554 466678888877652 347889999998888877776554323566666776653
No 342
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.73 E-value=95 Score=32.11 Aligned_cols=47 Identities=19% Similarity=0.031 Sum_probs=29.7
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
...+++|++||=.++|+ |.-+.++|..++ ...|++.+.+..++..+.
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g---------~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAG---------AREVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCcEEEECCCHHHHHHHH
Confidence 34678899999885432 333444444432 124899999988876443
No 343
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=50.72 E-value=1.1e+02 Score=32.50 Aligned_cols=50 Identities=20% Similarity=0.046 Sum_probs=32.3
Q ss_pred cCCCCCCEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+| +-|..+.|+|..+ ...|++.+.+..+...++ .+|..
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~----------G~~vi~~~~s~~~~~~l~----~~Ga~ 190 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK----------GCKVIGCAGSDDKVAWLK----ELGFD 190 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999986654 2333445555543 236899998888877664 35654
No 344
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=50.61 E-value=1.4e+02 Score=28.25 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=56.6
Q ss_pred cCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcc
Q 004775 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 164 (731)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid--~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~ 164 (731)
.|.|+....++..+... +...|+....+ ..+...+.+.++..+ .++.+...|......+.
T Consensus 7 Ga~~giG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~----------- 68 (167)
T PF00106_consen 7 GASSGIGRALARALARR------GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIR----------- 68 (167)
T ss_dssp TTTSHHHHHHHHHHHHT------TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHH-----------
T ss_pred CCCCHHHHHHHHHHHhc------CceEEEEeeecccccccccccccccccc-ccccccccccccccccc-----------
Confidence 34567778888777652 24578888888 788888888888766 67788878766422111
Q ss_pred ccccccccccccccEEEecCCCCCCCccccC
Q 004775 165 GIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (731)
Q Consensus 165 ~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~ 195 (731)
............+|.+++-+.....+.+...
T Consensus 69 ~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 69 ALIEEVIKRFGPLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp HHHHHHHHHHSSESEEEEECSCTTSBSGGGS
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 0001111234679999986655445554443
No 345
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=50.56 E-value=13 Score=34.83 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhccCCCEEEE
Q 004775 214 QVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LVY 233 (731)
-.+++++..++|+|||.+|.
T Consensus 23 l~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEE
Confidence 36689999999999999985
No 346
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.11 E-value=84 Score=34.43 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=34.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ |+....+++++... +...|+++|.+..|.+.+ +.+|..
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~------G~~~vi~~~~~~~~~~~~----~~~Ga~ 234 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIR------GASRIIGVDLNPSKFEQA----KKFGVT 234 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHH----HHcCCc
Confidence 46789999998754 56555444444321 123799999999988766 346753
No 347
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=49.89 E-value=50 Score=35.66 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=33.1
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+|+ -|..+.|+|..+ ...|++.+.+..+...++. .+|...
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~----------G~~Vi~~~~~~~~~~~~~~---~lGa~~ 200 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK----------GCYVVGSAGSDEKVDLLKN---KLGFDD 200 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH---hcCCce
Confidence 467899999976652 333445555543 2368888888888776643 256643
No 348
>PRK07326 short chain dehydrogenase; Provisional
Probab=49.75 E-value=97 Score=31.17 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=39.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..||=.+ |.|+...+++..+... .-.|++++.++.+...+...+... ..+.+...|..+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAE-------GYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 56677655 5788888888877542 237999999988877666555432 345555566544
No 349
>PRK06194 hypothetical protein; Provisional
Probab=49.72 E-value=1.6e+02 Score=30.70 Aligned_cols=61 Identities=5% Similarity=0.079 Sum_probs=40.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|.|+...+++..|... .-.|++.|.+..++..+...+...+. ++.+...|..+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAAL-------GMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 45677 5556677888888887652 23788899988777666555543332 45666777655
No 350
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=49.59 E-value=24 Score=39.45 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhccCCCEEEEE
Q 004775 212 SLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.+|. .+++-+.++.|||.||..
T Consensus 203 ~i~~-~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 203 PIQV-NIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hHHH-HHHHHHHhccCCCeEEEE
Confidence 3555 789999999999999986
No 351
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=49.33 E-value=29 Score=37.95 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=45.4
Q ss_pred HHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhh
Q 004775 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 294 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~~~~~~~ 294 (731)
.+.|..|..+|++||+|+.- |++..|+--| ..+++.+.... + ..-..|+...+....+|.+|+
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi--sfHSlEDriV-K~~f~~~~~~~---------~-----~~~~~~~~~~~k~i~ps~~Ei 278 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI--SFHSLEDRIV-KRFFRELSKGC---------C-----GNKPKLKLLTKKPIKPSEEEI 278 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHHHH-HHHHHHhcccc---------c-----ccCCceEEcCCCCcCCCHHHH
Confidence 46789999999999999865 6777787655 66666543211 0 001246666666677888888
Q ss_pred hhhhcc
Q 004775 295 RKFRRI 300 (731)
Q Consensus 295 ~~~~~~ 300 (731)
..+-|+
T Consensus 279 ~~NpRs 284 (296)
T PRK00050 279 AANPRA 284 (296)
T ss_pred HhCcch
Confidence 766553
No 352
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.15 E-value=1.3e+02 Score=30.33 Aligned_cols=61 Identities=5% Similarity=-0.057 Sum_probs=41.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++.+.+..+...+...++..+ .++.+...|...
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKE-------GVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 45677666 4778888888877542 3488999999888776666555443 256666677654
No 353
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=48.76 E-value=1.5e+02 Score=30.54 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=38.0
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+||=.+|+ |+....++..+... ...|+..+.+..++..+...++..+ .+.+...|..+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKK-------GARVVISSRNEENLEKALKELKEYG--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 45555654 56677788777652 3478888999888877776665443 45555566544
No 354
>PRK08324 short chain dehydrogenase; Validated
Probab=48.02 E-value=79 Score=38.31 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+|.+||=.+| .|+....++..+... ...|+++|.+..++..+...+... .++.+...|..+...+.-
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~-------Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~--- 487 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAE-------GACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQA--- 487 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC-------cCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHH---
Confidence 4677775554 567778888777642 247999999998877665544322 345566666554221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRIVY 233 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp---GG~LVY 233 (731)
...........+|.|+.-+--+..+.+.. .++.|...- ..+ ..-...+++.++++++. ||++|+
T Consensus 488 --------~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~---~~N-~~g~~~l~~~~~~~l~~~~~~g~iV~ 555 (681)
T PRK08324 488 --------AFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSF---DVN-ATGHFLVAREAVRIMKAQGLGGSIVF 555 (681)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHH---HHH-hHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 00000011246899887553333332221 122232211 111 11234456667777665 688887
Q ss_pred Ee
Q 004775 234 ST 235 (731)
Q Consensus 234 ST 235 (731)
.+
T Consensus 556 vs 557 (681)
T PRK08324 556 IA 557 (681)
T ss_pred EC
Confidence 54
No 355
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=46.97 E-value=97 Score=33.17 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.++.+||-.++|. |..+.++|..++ ...|++.+.+..+..++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G---------~~~v~~~~~s~~~~~~~ 206 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG---------AAEIVATDLADAPLAVA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHH
Confidence 3899999865432 334445554432 22688998888877744
No 356
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.96 E-value=1.5e+02 Score=31.90 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
...+++|.+||=.++ |+-...++++.... +...|++.+.+..+...+.
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~------G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAF------GATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHH
Confidence 456789999998643 44433333333321 1123888888888877663
No 357
>PRK12937 short chain dehydrogenase; Provisional
Probab=46.62 E-value=1.4e+02 Score=30.21 Aligned_cols=137 Identities=11% Similarity=0.086 Sum_probs=66.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+ |.|+...++++.|... ...|+.... +..+...+.+.+...+. ++.+...|..+...+.-
T Consensus 5 ~~~vlItG-~~~~iG~~la~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~--- 72 (245)
T PRK12937 5 NKVAIVTG-ASRGIGAAIARRLAAD-------GFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTR--- 72 (245)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHH---
Confidence 44555444 4677888888888652 234555443 44555666666655543 45666666654221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
............|.|+..+.=.+.+.+...+ +..|......++ .-...++..+++.++.+|++|+.+++
T Consensus 73 --------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~--~~~~~~~~~~n~-~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 73 --------LFDAAETAFGRIDVLVNNAGVMPLGTIADFD--LEDFDRTIATNL-RGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCC--HHHHHHHHhhhc-hHHHHHHHHHHHHhccCcEEEEEeec
Confidence 0000001124678888744211111111111 112211111111 12234566677777788999999875
Q ss_pred C
Q 004775 238 M 238 (731)
Q Consensus 238 l 238 (731)
.
T Consensus 142 ~ 142 (245)
T PRK12937 142 V 142 (245)
T ss_pred c
Confidence 3
No 358
>PRK06701 short chain dehydrogenase; Provisional
Probab=46.47 E-value=1.3e+02 Score=31.89 Aligned_cols=135 Identities=9% Similarity=0.047 Sum_probs=65.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.+.+||=.+| .|+....++..+... ...|+.++.+. .....+...++..+ .++.+...|..+...+..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~-------G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~-- 113 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE-------GADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKD-- 113 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHH--
Confidence 3567777665 566677787777642 24677777664 34444444444333 245566677654322110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccC-hh-hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PD-IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~-pd-~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...........+|.|+..+ |.+..... .+ .+..|......+ ..--..+++.++..++++|++||.
T Consensus 114 ---------~~~~i~~~~~~iD~lI~~A---g~~~~~~~~~~~~~~~~~~~~~~N-~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 114 ---------AVEETVRELGRLDILVNNA---AFQYPQQSLEDITAEQLDKTFKTN-IYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred ---------HHHHHHHHcCCCCEEEECC---cccCCCCCcccCCHHHHHHHHhhh-hHHHHHHHHHHHHHHhhCCeEEEE
Confidence 0000001123679888744 32221110 00 111221111111 123345666777777778899986
Q ss_pred eC
Q 004775 235 TC 236 (731)
Q Consensus 235 TC 236 (731)
+-
T Consensus 181 sS 182 (290)
T PRK06701 181 GS 182 (290)
T ss_pred ec
Confidence 53
No 359
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.02 E-value=2e+02 Score=29.25 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=42.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|.|+...+++..|... ...|++++.++.+...+.+.++..+. ++.+...|..+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARA-------GAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTN 67 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC-------CCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCC
Confidence 55677 5556678888888887652 24788999999888877777765543 45556666654
No 360
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.67 E-value=1.7e+02 Score=30.13 Aligned_cols=131 Identities=13% Similarity=0.100 Sum_probs=64.4
Q ss_pred CCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|..||=.+|+. ++....+++.|... ...|+..+.+. +.. ..++.+....+.+...|..+...+.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~-------G~~Vi~~~r~~-~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~---- 71 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ-------GATVIYTYQND-RMK---KSLQKLVDEEDLLVECDVASDESIE---- 71 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC-------CCEEEEecCch-HHH---HHHHhhccCceeEEeCCCCCHHHHH----
Confidence 67888888875 67788888887652 34677777763 332 2233332234555566655421110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Cccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
............+|.++..+--... +.+. ..++-|.. ....++ .-...+.+.++.+++.+|++|
T Consensus 72 -------~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~---~~~in~-~~~~~l~~~~~~~~~~~g~Iv 140 (252)
T PRK06079 72 -------RAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYAL---AQDISA-YSLIAVAKYARPLLNPGASIV 140 (252)
T ss_pred -------HHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHH---HhCccc-HHHHHHHHHHHHhcccCceEE
Confidence 0000011122568988875521110 1111 12222322 111111 122345566667777789888
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
+.+
T Consensus 141 ~is 143 (252)
T PRK06079 141 TLT 143 (252)
T ss_pred EEe
Confidence 764
No 361
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=45.10 E-value=4.1e+02 Score=31.94 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=45.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEec
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--------ANLIVTNH 144 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~--------~ni~vt~~ 144 (731)
-++.+.|..||=.|| .|+...++++.|... ...|++++.+..++..+...+..++. .++.++..
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~-------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKL-------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVEC 145 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEe
Confidence 345667877776665 588888888887652 34789999999888776665543221 24666667
Q ss_pred cccc
Q 004775 145 EAQH 148 (731)
Q Consensus 145 Da~~ 148 (731)
|..+
T Consensus 146 DLtD 149 (576)
T PLN03209 146 DLEK 149 (576)
T ss_pred cCCC
Confidence 7655
No 362
>PRK09242 tropinone reductase; Provisional
Probab=45.05 E-value=2e+02 Score=29.40 Aligned_cols=62 Identities=6% Similarity=-0.078 Sum_probs=40.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~ 148 (731)
|..||=.+| .|+....++..+... .-.|++.+.+..++..+..+++... ...+.+...|...
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGL-------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 566776665 566677888777652 2478888998888877766665431 2345566666654
No 363
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=44.86 E-value=2.1e+02 Score=29.34 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=41.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.++ .|+...+++..|... ...|+..+.+..+...+...++..+. .+.+...|..+
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~~-------G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 71 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFATA-------GASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITS 71 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 677887775 466677788777652 24678888888888777776665543 35556667665
No 364
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.92 E-value=2e+02 Score=30.37 Aligned_cols=133 Identities=9% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+..||=.+|+. ++....++..+... ...|+..+.+....+.+....+.++.. .+...|..+...+.-
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~-------G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~--- 72 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQ-------GAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKS--- 72 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHH---
Confidence 56777777764 57778888877652 246777787753223333333334432 344556655322110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCC----CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSG----DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG----dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...........+|.++..+--.. .+.+. ..++.|.+ .-..++.. ...+.+.++.+++.+|+||
T Consensus 73 --------~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~---~~~vN~~g-~~~l~~~~~p~m~~~g~Iv 140 (274)
T PRK08415 73 --------LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNI---AMEISVYS-LIELTRALLPLLNDGASVL 140 (274)
T ss_pred --------HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHH---HhhhhhHH-HHHHHHHHHHHhccCCcEE
Confidence 00001112356898887553211 01111 12233332 11112221 2345666777777789988
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
+.+
T Consensus 141 ~is 143 (274)
T PRK08415 141 TLS 143 (274)
T ss_pred EEe
Confidence 764
No 365
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=43.90 E-value=2.1e+02 Score=32.33 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHC
Q 004775 219 MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 219 ~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
....+.+++|-.+|.. .|+.|...+.+...++++.
T Consensus 104 ~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~ 138 (411)
T TIGR03026 104 ETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERA 138 (411)
T ss_pred HHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhh
Confidence 3444567887666654 4888999999988888763
No 366
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=43.42 E-value=2.1e+02 Score=29.01 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=43.1
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
+.++.+||=.+ |.|+....++..|... ...|++.+.+......+...++..+...+.+...|.
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARH-------GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHC-------CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 34577777666 4677788888777642 248999999988887777777666554555554454
No 367
>PRK06949 short chain dehydrogenase; Provisional
Probab=42.70 E-value=3.7e+02 Score=27.32 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=41.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.+ |.|+...+++..+... .-.|++.+.+..++..+...+...+. ++.+...|...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQA-------GAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 356777665 5677788888887652 23799999999988877776654432 35556666554
No 368
>PRK06914 short chain dehydrogenase; Provisional
Probab=42.19 E-value=1.7e+02 Score=30.40 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.8
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
.||= +-|.|+....++..|... .-.|++.+.+...+..+.+.++..+. .++.+...|..+
T Consensus 5 ~~lI-tGasg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 5 IAIV-TGASSGFGLLTTLELAKK-------GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred EEEE-ECCCchHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 4544 445677778888777652 23788999988888777766655443 356666677665
No 369
>PRK12829 short chain dehydrogenase; Provisional
Probab=41.59 E-value=1e+02 Score=31.53 Aligned_cols=61 Identities=11% Similarity=-0.004 Sum_probs=41.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
-++.+||=.+|. |+...+++..|... .-.|++++.+......+.+...+. ++.+...|..+
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~-------g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEA-------GARVHVCDVSEAALAATAARLPGA---KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCC
Confidence 367788877764 77888888887652 246899999887766655443322 45666666654
No 370
>PRK08643 acetoin reductase; Validated
Probab=41.38 E-value=2.2e+02 Score=29.05 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=40.7
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
..|| +.-|.|+...++++.+... ...|+..+.+..++..+...+...+ .++.+...|..+
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVED-------GFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 3444 4556777888898888652 2478899999888877777666544 345556666654
No 371
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=41.30 E-value=46 Score=36.23 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=58.3
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
..|..+||.+||-|- .++. .|.-.+++.|++.. |..-.+|-|.. .+...|+...|.
T Consensus 44 ~~gsv~~d~gCGngk-------y~~~------~p~~~~ig~D~c~~----l~~~ak~~~~~--~~~~ad~l~~p~----- 99 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGK-------YLGV------NPLCLIIGCDLCTG----LLGGAKRSGGD--NVCRADALKLPF----- 99 (293)
T ss_pred CCcceeeecccCCcc-------cCcC------CCcceeeecchhhh----hccccccCCCc--eeehhhhhcCCC-----
Confidence 458899999999884 2222 24557889887544 33334444443 345566666542
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE-EEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR-IVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~-LVYS 234 (731)
....||.+|.=+ ....|+. ...-.++++..++.|+|||. +||+
T Consensus 100 ----------------~~~s~d~~lsia-------------vihhlsT------~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 100 ----------------REESFDAALSIA-------------VIHHLST------RERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred ----------------CCCccccchhhh-------------hhhhhhh------HHHHHHHHHHHHHHhcCCCceEEEE
Confidence 235678776411 1111111 12345678899999999997 5564
No 372
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=41.28 E-value=33 Score=35.57 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
++.+++|.+||.|+.+..+... ...|++||++..-....+..+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-----------~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-----------GKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC--------------SSEEEEEES-HHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-----------ccceeeeechHHHHHHHHHHH
Confidence 6889999999999987766441 478999999987655544333
No 373
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=41.15 E-value=90 Score=32.75 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=45.6
Q ss_pred chhhhcCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecc
Q 004775 69 VPPLFLDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHE 145 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~D 145 (731)
|.+++..-+ -..+++.|++ +.+.|+.||.+-++. .|+++++-.+........+.+..++..+ +.++.++
T Consensus 33 ISAlAAG~n-AkliVe~~s~g~~~~ttiaLaaAAr~T-------gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 33 ISALAAGWN-AKLIVEAWSSGGAISTTIALAAAARQT-------GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred HHHHhcccc-ceEEEEEecCCCchHhHHHHHHHHHhc-------CCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 444444332 3466777654 335677787776653 6899999999887777777777777654 3555555
Q ss_pred c
Q 004775 146 A 146 (731)
Q Consensus 146 a 146 (731)
+
T Consensus 105 ~ 105 (218)
T PF07279_consen 105 A 105 (218)
T ss_pred C
Confidence 4
No 374
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=41.10 E-value=1.8e+02 Score=31.96 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=28.1
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+++|++||=++ .|+-...++++.... ...|++.+.+..+...+ ++++|..
T Consensus 178 ~~~g~~vlV~G--~G~vG~~av~~Ak~~-------G~~vi~~~~~~~~~~~~---~~~~Ga~ 227 (357)
T PLN02514 178 KQSGLRGGILG--LGGVGHMGVKIAKAM-------GHHVTVISSSDKKREEA---LEHLGAD 227 (357)
T ss_pred CCCCCeEEEEc--ccHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHH---HHhcCCc
Confidence 36899999774 355444443333321 23577788777665433 2356764
No 375
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=40.78 E-value=1.5e+02 Score=32.73 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=27.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+++|++||=.+| |+-...++++.... ...|++.+.+..+...+ ++++|..
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~-------Ga~vi~~~~~~~~~~~~---~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAF-------GLKVTVISSSSNKEDEA---INRLGAD 230 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHC-------CCEEEEEeCCcchhhhH---HHhCCCc
Confidence 568999998655 44444433333221 23577777766554322 2456764
No 376
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=40.39 E-value=1.3e+02 Score=34.63 Aligned_cols=42 Identities=14% Similarity=-0.048 Sum_probs=29.0
Q ss_pred CCCCEEEeeccCcchH-HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 77 QPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
-+|++|+=+++||=|. +++++..+ ...|+++|+++.|+..+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~----------Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ----------GARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC----------CCEEEEEECChhhHHHHH
Confidence 4799999999988444 33333332 237888999999976543
No 377
>PRK07063 short chain dehydrogenase; Provisional
Probab=40.33 E-value=2.1e+02 Score=29.39 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=41.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+...+++..|... ...|+..+.+..++..+.+.+...+ ..++.+...|..+
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~-------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFARE-------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 557776665 467788888877652 3478899999988887777765421 2345666666654
No 378
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.27 E-value=2.7e+02 Score=27.86 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=39.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+....+++.+... .-.|++.+.+..++..+...+...+ ++.+...|..+
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKE-------GAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCC
Confidence 567777666 477788888877642 2478999999888776655554332 45555565544
No 379
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=39.09 E-value=3e+02 Score=28.07 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=42.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.|.+||=.+ |.|+....++..+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA-------GAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 366777555 5678888888877642 24788899998888777776665442 35555566554
No 380
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.99 E-value=2.8e+02 Score=28.35 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=41.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+| .|+...+++..|... ...|+..+.+..+++.+...++..+ .++.....|..+
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEA-------GAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 667776665 456678888877652 2478889999988888877776554 345555666554
No 381
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=38.92 E-value=74 Score=36.33 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc-------cCCCcccCCCCCC
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ-------HFPGCRANKNFSS 160 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~-------~fp~~~~~~~~~~ 160 (731)
|-|.-.+-+|.++... .-.|+++|++++++..+.. |. ..+..-+-. .-..++...+
T Consensus 16 GLGYVGLPlA~~fA~~-------G~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraTtd--- 78 (436)
T COG0677 16 GLGYVGLPLAAAFASA-------GFKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRATTD--- 78 (436)
T ss_pred ccccccHHHHHHHHHc-------CCceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEecC---
Confidence 5566666776666542 3589999999999987643 21 111111100 0000110000
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCC
Q 004775 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (731)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p 240 (731)
. ..-..-|++++=+|---++ .+.||+ ..-.+..+.....||+|-.+|+- -|..|
T Consensus 79 --------~--~~l~~~dv~iI~VPTPl~~--~~~pDl-------------s~v~~aa~sIa~~L~kG~LVIlE-ST~~P 132 (436)
T COG0677 79 --------P--EELKECDVFIICVPTPLKK--YREPDL-------------SYVESAARSIAPVLKKGDLVILE-STTPP 132 (436)
T ss_pred --------h--hhcccCCEEEEEecCCcCC--CCCCCh-------------HHHHHHHHHHHHhcCCCCEEEEe-cCCCC
Confidence 0 0012567777666533333 256664 11234455667789997777665 67789
Q ss_pred cCcHHHHHHHHHH
Q 004775 241 VENEAVVAEILRK 253 (731)
Q Consensus 241 ~ENEaVV~~~L~~ 253 (731)
--.|+++..+|+.
T Consensus 133 GTTe~v~~plle~ 145 (436)
T COG0677 133 GTTEEVVKPLLEE 145 (436)
T ss_pred CcHHHHHHHHHhh
Confidence 9999999999987
No 382
>PRK07102 short chain dehydrogenase; Provisional
Probab=38.80 E-value=2.6e+02 Score=28.29 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=41.1
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+||=.+ |.|+....++..+... ...|++.+.+..+...+...+...+..++.+...|..+.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAA-------GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 455444 5678888888887652 247999999988877666555443445677777776653
No 383
>PRK07576 short chain dehydrogenase; Provisional
Probab=38.78 E-value=2.5e+02 Score=29.06 Aligned_cols=62 Identities=5% Similarity=0.074 Sum_probs=40.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
++.+||=.+| .|+...+++..+... ...|++.+.+...+..+...+...+. .+.+...|..+
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARA-------GANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCC
Confidence 4667777764 667788888777642 23789999988877666555554432 34555666554
No 384
>PRK07832 short chain dehydrogenase; Provisional
Probab=37.83 E-value=1.6e+02 Score=30.64 Aligned_cols=56 Identities=5% Similarity=-0.046 Sum_probs=34.5
Q ss_pred ccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 86 CAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 86 CAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.-|.|+....+++.+... ...|+.++.+...+..+...++..+...+.+...|..+
T Consensus 6 tGas~giG~~la~~la~~-------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (272)
T PRK07832 6 TGAASGIGRATALRLAAQ-------GAELFLTDRDADGLAQTVADARALGGTVPEHRALDISD 61 (272)
T ss_pred eCCCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC
Confidence 345677778888777642 24688888888777766666655543333334455443
No 385
>PRK05717 oxidoreductase; Validated
Probab=37.64 E-value=2e+02 Score=29.47 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.++ .|+...+++..|... ...|+..|.+..+...+.+. ++ .++.+...|..+
T Consensus 10 ~k~vlItG~-sg~IG~~~a~~l~~~-------g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~ 67 (255)
T PRK05717 10 GRVALVTGA-ARGIGLGIAAWLIAE-------GWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVAD 67 (255)
T ss_pred CCEEEEeCC-cchHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCC
Confidence 567775555 577888888888652 34788888887776554432 23 245566666655
No 386
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=37.59 E-value=1.6e+02 Score=31.58 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=29.2
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
...+++|.+||-.+++. |.-++++|..+ ...|++...+..+...+
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~----------g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR----------GARVIVVDIDDERLEFA 199 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEECCCHHHHHHH
Confidence 34678899999984332 33445555543 35688887788877766
No 387
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=37.50 E-value=3.3e+02 Score=27.49 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=39.0
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+||=.+ |.|+....++..+... ...|++.+.+..+...+...++..+ .++.+...|..+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAA-------GANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 344334 5677888888877542 2479999999888877777665444 346666666554
No 388
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=37.47 E-value=1.4e+02 Score=32.40 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=60.1
Q ss_pred CEEEeeccCc--chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCcccC
Q 004775 80 HFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 80 ~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n--i~vt~~Da~~fp~~~~~ 155 (731)
...||++||- -+-+=++|+... |..+|+-+|.|+--+...+..+. +.++ ..++..|...-..+.-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~--------P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~ 139 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA--------PDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAH 139 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH---------TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCS
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC--------CCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcC
Confidence 5899999982 234667777764 57899999999988776555443 2344 77888888763222100
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
... ...-.-...+=++|+ |++..-+|. ..-..|+.+-...|.||.+|+.|-
T Consensus 140 p~~---------~~~lD~~rPVavll~-------~vLh~v~D~-------------~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 140 PEV---------RGLLDFDRPVAVLLV-------AVLHFVPDD-------------DDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp HHH---------HCC--TTS--EEEEC-------T-GGGS-CG-------------CTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHH---------HhcCCCCCCeeeeee-------eeeccCCCc-------------cCHHHHHHHHHHhCCCCceEEEEe
Confidence 000 000000112223333 333222221 112568888899999999999996
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
.+-
T Consensus 191 ~t~ 193 (267)
T PF04672_consen 191 ATD 193 (267)
T ss_dssp EB-
T ss_pred cCC
Confidence 653
No 389
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=37.47 E-value=61 Score=30.61 Aligned_cols=40 Identities=30% Similarity=0.245 Sum_probs=26.1
Q ss_pred eeccCcc--hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 84 DMCAAPG--SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 84 DmCAAPG--sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
|++|.-| +.+...+.... .+.+.|+|+|.++..+..|..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~-------~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKC-------GPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHT-------S--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHc-------CCCCEEEEEECCHHHHHHHhHH
Confidence 8899999 66666543211 2478999999999999999988
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.46 E-value=72 Score=28.72 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=36.0
Q ss_pred cCcchHHHHHHHHhhcCCCCCCCCCe-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 87 AAPGSKTFQLLEIIHQSTNPGALPNG-MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G-~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+|-|..+.++++.|.. .+ .|+.+|.++.++..+... + +.++.+|+.+.
T Consensus 4 ~G~g~~~~~i~~~L~~--------~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~ 52 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--------GGIDVVVIDRDPERVEELREE----G---VEVIYGDATDP 52 (116)
T ss_dssp ES-SHHHHHHHHHHHH--------TTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSH
T ss_pred EcCCHHHHHHHHHHHh--------CCCEEEEEECCcHHHHHHHhc----c---cccccccchhh
Confidence 5778899999999986 35 799999999998776542 3 56778887763
No 391
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=37.44 E-value=1.3e+02 Score=32.44 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
..++|++||-.++|. |..++++|..++ ...|++.+.+..|..++.
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAG---------ASLVIASDPNPYRLELAK 205 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHHH
Confidence 346888888854321 334444544431 115777787888776554
No 392
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=37.44 E-value=60 Score=34.02 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHHHHHHhhccCCCE-----EEEE---eCCC-CCcCcHHHHHHHHHHCC
Q 004775 215 VQIAMRGISLLKVGGR-----IVYS---TCSM-NPVENEAVVAEILRKCE 255 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~-----LVYS---TCSl-~p~ENEaVV~~~L~~~~ 255 (731)
-++|+++.++|+++|. |... .|-- +.-=++....+++...|
T Consensus 124 G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LG 173 (219)
T PF11968_consen 124 GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLG 173 (219)
T ss_pred HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCC
Confidence 4689999999999999 4443 2321 23345666677777665
No 393
>PRK06172 short chain dehydrogenase; Provisional
Probab=37.44 E-value=3.5e+02 Score=27.47 Aligned_cols=61 Identities=7% Similarity=0.016 Sum_probs=42.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+....++..+... ...|++++.+..++..+.+.++..+ .++.+...|..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFARE-------GAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 456776665 566777788777642 2479999999988877777776654 346666677654
No 394
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.04 E-value=2.6e+02 Score=29.30 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=34.8
Q ss_pred CCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..+|=.+|+. ++....+|..|... ...|+.++.+....+.+....+.++. ......|..+
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~-------Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d 68 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQ-------GAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVED 68 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhC-------CCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCC
Confidence 66788888876 36777888777652 24677777665433333333333342 2334556554
No 395
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=36.83 E-value=3.3e+02 Score=27.79 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..||=.+ |.|+...+++..|... ...|+..+.+..++..+.+.++..+. .+.+...|..+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~-------G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 69 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEY-------GAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTH 69 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCC
Confidence 45666555 5577788888888652 24788899998888777776665442 34455566554
No 396
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=36.63 E-value=2e+02 Score=31.03 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=30.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
.++++|.+||=.+ .|+-...++++.... +...|++.+.+..+...+.
T Consensus 168 ~~~~~g~~vlI~g--~g~vG~~a~q~a~~~------G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 168 SGFKPGDTALVLG--AGPIGLLTILALKAA------GASKIIVSEPSEARRELAE 214 (351)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH
Confidence 4678899888774 355554444444431 1237899999999887663
No 397
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.41 E-value=2.7e+02 Score=28.94 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=22.3
Q ss_pred CCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH
Q 004775 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (731)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~ 121 (731)
|..+|=.+|+.| +....+++.+... ...|+..+.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~-------G~~v~~~~r~~ 44 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH-------GAELWFTYQSE 44 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc-------CCEEEEEeCch
Confidence 556776677664 5667777776542 23566667664
No 398
>KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis]
Probab=36.21 E-value=1.1e+02 Score=30.31 Aligned_cols=121 Identities=20% Similarity=0.361 Sum_probs=72.7
Q ss_pred hhhHHHHHhhhcCCCCCCCCCceEeecCCC----CcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEecCCCCC
Q 004775 501 ETIINSIKTFYGIDDSFQLSGQLVSRNGDT----NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 576 (731)
Q Consensus 501 ~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~----~~~k~iy~vs~~vk~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~ 576 (731)
..+++.+..|-|=+-+ +|+.|.... ..+.++||+|+-+.+.- .+. .+=++++.|. .|.|-. |
T Consensus 10 k~vfekla~yIG~Nv~-----~lidr~D~~~cfrlhkdRVyyvsEr~~k~a-~~i---sr~~L~s~Gt-c~GKFT-K--- 75 (180)
T KOG3492|consen 10 KVVFEKLAKYIGDNVS-----HLIDRPDGTYCFRLHKDRVYYVSERIMKLA-ACI---SRKNLVSLGT-CFGKFT-K--- 75 (180)
T ss_pred HHHHHHHHHHHhhhhh-----eeecCCCCceeeEeeCceEEeehHHHHHHH-hhh---cccceeEEeE-EEeeee-c---
Confidence 3568888888886533 333333321 24689999999999954 444 3567778776 344432 1
Q ss_pred CcccceeeccchhhhhhhcccCcE-EEcCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEe
Q 004775 577 SAPCSFRISSEGLPVILPYITKQI-LYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 644 (731)
Q Consensus 577 ~~~c~~Ri~~eGl~~i~p~~~~r~-v~~~~~d~~~lL~~~~~~~~~~~~~e~~~~~~~l~~G~~vl~~~ 644 (731)
.-.||+.--.|.+|.||-.-.+ |.-+.| +..|-- +..+..-++..-+++..+.-|+++.
T Consensus 76 --t~kfrlhitaL~~La~~Ak~KvWiKp~~E-m~flYG------NhvlKs~vgRitd~~p~~~GVvVys 135 (180)
T KOG3492|consen 76 --TGKFRLHITALDYLAPYAKYKVWIKPNAE-MQFLYG------NHVLKSGVGRITDGIPQHQGVVVYS 135 (180)
T ss_pred --cceEEEeeeehhhhhhhhheeEEeccCcc-cceeec------ccchhcccceecCCCCCcceEEEEe
Confidence 1489999999999999976444 444433 222211 1122222344445566677777776
No 399
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.11 E-value=3.5e+02 Score=27.56 Aligned_cols=61 Identities=5% Similarity=0.048 Sum_probs=40.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..|... ...|+..+.+...+..+...++..+. ++.+...|..+
T Consensus 6 ~k~~lItG-as~giG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 66 (254)
T PRK07478 6 GKVAIITG-ASSGIGRAAAKLFARE-------GAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRD 66 (254)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 45666444 4567778888777642 24788889998888888777765553 45555566554
No 400
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=36.07 E-value=3.1e+02 Score=27.77 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=35.8
Q ss_pred cCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.|.|+...+++..|... .-.|+.++.+..++..+.+.+...+. ++.+...|..+
T Consensus 7 G~sg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 60 (254)
T TIGR02415 7 GGAQGIGKGIAERLAKD-------GFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSD 60 (254)
T ss_pred CCCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 35677888888877652 24788888888887777666655442 45555666544
No 401
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=35.87 E-value=3.3e+02 Score=28.89 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=28.4
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
..++++..||=. |.|+....++++.... ...|++.+.+..+.+.+
T Consensus 163 ~~~~~~~~vlV~--g~g~vg~~~~~la~~~-------g~~v~~~~~~~~~~~~~ 207 (329)
T cd08298 163 AGLKPGQRLGLY--GFGASAHLALQIARYQ-------GAEVFAFTRSGEHQELA 207 (329)
T ss_pred hCCCCCCEEEEE--CCcHHHHHHHHHHHHC-------CCeEEEEcCChHHHHHH
Confidence 456788888876 3455544444444431 34788888887776655
No 402
>PRK07454 short chain dehydrogenase; Provisional
Probab=35.73 E-value=2.5e+02 Score=28.37 Aligned_cols=62 Identities=5% Similarity=-0.171 Sum_probs=42.0
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+.+||=.+ |.|+....++..+... ...|++.+.+......+...++..+ .++.+...|....
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKA-------GWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 34566555 4688888888887652 2379999999888777766665544 3456666776653
No 403
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.69 E-value=2.7e+02 Score=28.02 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=38.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... .-.|++.+.+..++..+...+.. + .++.+...|..+
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAE-------GARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCC
Confidence 44566554 4567778888777642 23699999999887777665543 2 235556666554
No 404
>PRK08265 short chain dehydrogenase; Provisional
Probab=35.63 E-value=3.1e+02 Score=28.34 Aligned_cols=58 Identities=5% Similarity=0.002 Sum_probs=36.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..+... ...|+..|.+...+..+... ++ ..+.+...|..+
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAA-------GARVAIVDIDADNGAAVAAS---LG-ERARFIATDITD 63 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH---hC-CeeEEEEecCCC
Confidence 45666555 4566778888777642 24788899988766555443 23 235556666654
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=35.46 E-value=85 Score=32.57 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=45.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHH-HHHHHHHHHHcCCCceEEEecccccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R-~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+..+.+||=.+| .|+....++..+... +.-.|++.+.+... +..+.+.++..+..++.++..|..+.
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~------gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKN------APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT 72 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhc------CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence 345667776665 677788888876541 11378888888775 77777777666655677777877653
No 406
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=35.39 E-value=3.4e+02 Score=29.44 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=32.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
++|.+||=.+ .|+....+++++... +.+.|++.+.+..|...+ +.+|...
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~------G~~~v~~~~~~~~~~~~~----~~~g~~~ 225 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLA------GARRVIVIDGSPERLELA----REFGADA 225 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHH----HHcCCCe
Confidence 5888888874 366655555544431 123789999988887655 3466643
No 407
>PLN02702 L-idonate 5-dehydrogenase
Probab=35.17 E-value=3e+02 Score=29.99 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=32.1
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
...+.+|.+||=.+ .|+-...++++.... +...|+++|.+..|..++. .+|...
T Consensus 176 ~~~~~~g~~vlI~g--~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~~ 229 (364)
T PLN02702 176 RANIGPETNVLVMG--AGPIGLVTMLAARAF------GAPRIVIVDVDDERLSVAK----QLGADE 229 (364)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence 34677899998884 354443333333321 1235889999988877543 456543
No 408
>PRK10083 putative oxidoreductase; Provisional
Probab=34.70 E-value=2.8e+02 Score=29.64 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=33.0
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ |+-...++++.... .+...|++.|.+..|..++. .+|..
T Consensus 156 ~~~~~g~~vlI~g~--g~vG~~~~~~a~~~-----~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 156 TGPTEQDVALIYGA--GPVGLTIVQVLKGV-----YNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 46789999988763 55544444433210 01346889999999887664 45653
No 409
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=34.61 E-value=2.4e+02 Score=30.97 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=59.7
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
..+++|+.||=.+ .|+....+++..... +...|++.|.+..+..++. .+|. .. ++.....+.. .
T Consensus 172 ~~~~~g~~vlI~g--~g~vg~~~~~~a~~~------G~~~vi~~~~~~~~~~~~~----~~g~-~~--v~~~~~~~~~-~ 235 (375)
T cd08282 172 AGVQPGDTVAVFG--AGPVGLMAAYSAILR------GASRVYVVDHVPERLDLAE----SIGA-IP--IDFSDGDPVE-Q 235 (375)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCC-eE--eccCcccHHH-H
Confidence 3467899998843 455544444444321 1126888999998877664 3554 21 1111111000 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
+ .......+|.|+- |+|....+++..+|. ...+..+++.|+++|+++.
T Consensus 236 i---------------~~~~~~~~d~v~d---~~g~~~~~~~~~~~~--------------~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 236 I---------------LGLEPGGVDRAVD---CVGYEARDRGGEAQP--------------NLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred H---------------HHhhCCCCCEEEE---CCCCcccccccccch--------------HHHHHHHHHHhhcCcEEEE
Confidence 0 0001135888864 777555444433222 1236677889999999863
No 410
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.42 E-value=4.4e+02 Score=26.39 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=39.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..+... .-.|++.+.+..+...+...+...+ .++.+...|..+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAAD-------GAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRD 66 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 45777555 4677788888777642 2478999998877766666555443 345666666544
No 411
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=34.37 E-value=69 Score=34.56 Aligned_cols=90 Identities=26% Similarity=0.387 Sum_probs=51.9
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc-CCCEEEEEeCCCCCcCcHHH--------
Q 004775 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCSMNPVENEAV-------- 246 (731)
Q Consensus 176 ~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK-pGG~LVYSTCSl~p~ENEaV-------- 246 (731)
..+.|++|=|-||.--+ -.++|+.++.-+| .|.+++|||--|... |..
T Consensus 148 ePeLlILDEPFSGLDPV---------------------N~elLk~~I~~lk~~GatIifSsH~Me~v--EeLCD~llmL~ 204 (300)
T COG4152 148 EPELLILDEPFSGLDPV---------------------NVELLKDAIFELKEEGATIIFSSHRMEHV--EELCDRLLMLK 204 (300)
T ss_pred CCCEEEecCCccCCChh---------------------hHHHHHHHHHHHHhcCCEEEEecchHHHH--HHHhhhhheec
Confidence 56899999999986532 1234444433333 344555554433111 111
Q ss_pred ---------HHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccc
Q 004775 247 ---------VAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWL 288 (731)
Q Consensus 247 ---------V~~~L~~~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~ 288 (731)
|..+=+.++...-+++-...++.|...||+..|.-...|.|+
T Consensus 205 kG~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~~~~~~G~~~ 255 (300)
T COG4152 205 KGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWR 255 (300)
T ss_pred CCceEEeccHHHHHHhcCCceEEEeccCchHHHhcCCCceeeeeccCCceE
Confidence 233333455555666666667778889999998765556664
No 412
>PRK06139 short chain dehydrogenase; Provisional
Probab=34.28 E-value=3.6e+02 Score=29.53 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=41.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..||= .-|+|+....++..+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 7 ~k~vlI-TGAs~GIG~aia~~la~~-------G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVVI-TGASSGIGQATAEAFARR-------GARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTD 67 (330)
T ss_pred CCEEEE-cCCCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCC
Confidence 456664 445677788888877652 34788899999999888887776654 34455556544
No 413
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=33.92 E-value=1.7e+02 Score=32.63 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=13.9
Q ss_pred HHHHHhhccCCCEEEEE
Q 004775 218 AMRGISLLKVGGRIVYS 234 (731)
Q Consensus 218 L~rAl~lLKpGG~LVYS 234 (731)
+..++++|++||++|..
T Consensus 256 ~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 256 LLPLFSLLKVSGKLVAL 272 (375)
T ss_pred HHHHHHhhcCCCEEEEE
Confidence 56678899999999854
No 414
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=33.90 E-value=79 Score=34.23 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=33.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
-.++|||.||=-. |-||-.+.|.+++... ...+||.-......+.++++
T Consensus 142 y~vkpGhtVlvha-AAGGVGlll~Ql~ra~-------~a~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 142 YNVKPGHTVLVHA-AAGGVGLLLCQLLRAV-------GAHTIATASTAEKHEIAKEN 190 (336)
T ss_pred cCCCCCCEEEEEe-ccccHHHHHHHHHHhc-------CcEEEEEeccHHHHHHHHhc
Confidence 3789999999644 4456666666666542 35788887777777666553
No 415
>PRK07831 short chain dehydrogenase; Provisional
Probab=33.28 E-value=4.9e+02 Score=26.70 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=42.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR-lg~~ni~vt~~Da~~ 148 (731)
..+.+||=.+++..+....++..+... ...|+..|.+..++......++. ++..++.+...|...
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEE-------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 346778777765225677777776542 23688889988888777666654 444456666677654
No 416
>PRK06197 short chain dehydrogenase; Provisional
Probab=32.72 E-value=4.4e+02 Score=27.93 Aligned_cols=64 Identities=5% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEecccccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQHF 149 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~ni~vt~~Da~~f 149 (731)
.+.+|| +.-|.|+...+++..|... ...|+..+.+..+...+.+.+... +-..+.+...|..+.
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~-------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAK-------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCH
Confidence 355677 4555678888888887652 237888888888776665555432 223456666776654
No 417
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.93 E-value=3.8e+02 Score=28.04 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=24.0
Q ss_pred CCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCC
Q 004775 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (731)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid 120 (731)
|..+|=.+|+.| +....+++.+... ...|+..+.+
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~-------G~~vil~~r~ 41 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE-------GAELAFTYQN 41 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC-------CCEEEEEecc
Confidence 567887888763 7777888877642 2356666766
No 418
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=31.58 E-value=91 Score=32.96 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
-.+|+.|||-.+|+|....+ |..++ -..+++|+++.-+..+..++.+.
T Consensus 220 s~~~diVlDpf~GsGtt~~a-a~~~~----------r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIA-AKNLG----------RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHH-HHHcC----------CceEEEecCHHHHHHHHHHHHhh
Confidence 46899999999999985444 44432 46788999999999988887654
No 419
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=31.56 E-value=2.2e+02 Score=30.61 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
.+++|.+||=.+ .|+-...++++.... +...|++.+.+..|...+.
T Consensus 163 ~~~~g~~vlI~g--~g~~g~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~ 208 (345)
T cd08286 163 KVKPGDTVAIVG--AGPVGLAALLTAQLY------SPSKIIMVDLDDNRLEVAK 208 (345)
T ss_pred CCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH
Confidence 467888888743 366544444444321 1246888999998877654
No 420
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=31.50 E-value=70 Score=37.23 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
-.+|=++=|.|+...-+ |. +.|...|+|+++++..+.....+.-.+......|+-.|+..|-.-...
T Consensus 297 ~~~lvvg~ggG~l~sfl----~~-----~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k---- 363 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFL----HM-----SLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAK---- 363 (482)
T ss_pred CcEEEEecCCCccccce----ee-----ecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhh----
Confidence 34444444456655444 22 246789999999999999998887655444445555565544211000
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCC
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~ 239 (731)
.......||.++.|+--+..+-+.--|- .-+-..+|..+-..|.|-|.++.---+-+
T Consensus 364 ----------~~~~~~~~dvl~~dvds~d~~g~~~pp~-------------~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 364 ----------SQQEDICPDVLMVDVDSKDSHGMQCPPP-------------AFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred ----------ccccccCCcEEEEECCCCCcccCcCCch-------------HHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 1123478999999986333222211111 11234567778888999998866544445
Q ss_pred CcCcHHHHHHH
Q 004775 240 PVENEAVVAEI 250 (731)
Q Consensus 240 p~ENEaVV~~~ 250 (731)
..-+..+...+
T Consensus 421 ~~~~~~~~~~l 431 (482)
T KOG2352|consen 421 SSFKDEVLMNL 431 (482)
T ss_pred cchhHHHHHhh
Confidence 55555555443
No 421
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=30.24 E-value=3.1e+02 Score=29.99 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=32.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=. |+|+....++++.... +.-.|++.+.+..|...+. .+|..
T Consensus 179 ~~~~~g~~vlI~--g~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~ 230 (365)
T cd05279 179 AKVTPGSTCAVF--GLGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAK----QLGAT 230 (365)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HhCCC
Confidence 467889999886 3466555554444331 1225888998888887663 35653
No 422
>PRK06198 short chain dehydrogenase; Provisional
Probab=30.24 E-value=4.8e+02 Score=26.55 Aligned_cols=61 Identities=2% Similarity=0.032 Sum_probs=37.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~-VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...++++.+... ... |++.+.+......+...++..+. .+.+...|..+
T Consensus 6 ~k~vlItG-a~g~iG~~la~~l~~~-------G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 67 (260)
T PRK06198 6 GKVALVTG-GTQGLGAAIARAFAER-------GAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLSD 67 (260)
T ss_pred CcEEEEeC-CCchHHHHHHHHHHHC-------CCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCC
Confidence 55677444 5677888888887642 224 88889887766655544543332 35555566554
No 423
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=29.65 E-value=3.5e+02 Score=29.72 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=32.4
Q ss_pred cCCCCCCEEEeeccCc--chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+|+. |+.+.|||..++ +.+++.-.+...... ++.+|...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G----------~~~v~~~~s~~k~~~----~~~lGAd~ 190 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG----------ATVVAVVSSSEKLEL----LKELGADH 190 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC----------CcEEEEecCHHHHHH----HHhcCCCE
Confidence 3578899999887654 456677777642 266666666655443 45567653
No 424
>PRK05876 short chain dehydrogenase; Provisional
Probab=29.19 E-value=5.9e+02 Score=26.67 Aligned_cols=61 Identities=7% Similarity=-0.004 Sum_probs=39.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+| .|+...++++.|... .-.|+..|.+..++..+...++..+. .+.+...|..+
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~-------G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARR-------GARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 556775555 567788888887652 23688889988887776666654443 34555566554
No 425
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.17 E-value=3.8e+02 Score=28.12 Aligned_cols=133 Identities=12% Similarity=0.051 Sum_probs=64.0
Q ss_pred CCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+..+|=.+|+ .++....+++.+... ...|+.+..+....+.+.+..+.++. ..+...|..+...+.-
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~-------G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~--- 77 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAA-------GAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVTDEASIDA--- 77 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCCCHHHHHH---
Confidence 5677777876 478888998888652 23566655543222333332333332 3344556554221110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
............|.++..+--... +.+ ...++.|.+ .-..++ .-...+++.++.+++.+|++|
T Consensus 78 --------~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~---~~~vN~-~~~~~l~~~~~~~~~~~g~Iv 145 (272)
T PRK08159 78 --------VFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTM---TMDISV-YSFTAVAQRAEKLMTDGGSIL 145 (272)
T ss_pred --------HHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHH---HHhHHH-HHHHHHHHHHHHhcCCCceEE
Confidence 000011123568988876532211 111 112233322 111111 113456666777777788888
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
..+
T Consensus 146 ~is 148 (272)
T PRK08159 146 TLT 148 (272)
T ss_pred EEe
Confidence 664
No 426
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.98 E-value=2.3e+02 Score=29.38 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC
Q 004775 78 PDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (731)
Q Consensus 78 pg~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid 120 (731)
.+.+||=.+|+ .++....++..|... ...|+..+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~-------G~~v~l~~r~ 42 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ-------GAEVVLTGFG 42 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC-------CCEEEEecCc
Confidence 35688888885 678888888887652 2477777765
No 427
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=28.91 E-value=3.5e+02 Score=29.88 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=33.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=. |+|+....++++.... +...|++.+.+..|..++. .+|..
T Consensus 199 ~~~~~g~~VlV~--g~g~vG~~ai~lA~~~------G~~~vi~~~~~~~~~~~~~----~~g~~ 250 (384)
T cd08265 199 GGFRPGAYVVVY--GAGPIGLAAIALAKAA------GASKVIAFEISEERRNLAK----EMGAD 250 (384)
T ss_pred CCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHH----HcCCC
Confidence 367889999877 3477655555554431 1226899998888765543 46654
No 428
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.77 E-value=2.7e+02 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=30.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.+++|+.||=.+| +|+....++++.... ...|++...+..+...+. .+|...
T Consensus 139 ~~~~g~~vlV~ga-~g~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~~----~~g~~~ 190 (320)
T cd08243 139 GLQPGDTLLIRGG-TSSVGLAALKLAKAL-------GATVTATTRSPERAALLK----ELGADE 190 (320)
T ss_pred CCCCCCEEEEEcC-CChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH----hcCCcE
Confidence 4678888886554 444444433333321 245888888888766553 356543
No 429
>PRK07677 short chain dehydrogenase; Provisional
Probab=28.46 E-value=5.4e+02 Score=26.17 Aligned_cols=60 Identities=3% Similarity=0.050 Sum_probs=38.9
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.++|=.+| .|+....++..+... ...|++.+.+..++..+...++..+ ..+.+...|...
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEE-------GANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 45665555 555677777777642 2478899999888877766665443 345666666544
No 430
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=28.42 E-value=1.7e+02 Score=31.53 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=74.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.+|.. +--.||| -.||..+-. +.-+++++++.++=...|+.++. +-.++.|...|+..-....++
T Consensus 88 N~~~~---l~~YpGS--P~lA~~llR-------~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LP- 152 (279)
T COG2961 88 NPGGG---LRYYPGS--PLLARQLLR-------EQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLP- 152 (279)
T ss_pred CCCCC---cccCCCC--HHHHHHHcc-------hhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCC-
Confidence 45554 4456776 233333321 25689999999999999998876 556888888887642221111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
...+=-.||+|||.--.+-. ..-.+-|..+++--. +|+. |
T Consensus 153 ----------------P~erRglVLIDPPfE~~~eY-------------------~rvv~~l~~~~kRf~-~g~y----a 192 (279)
T COG2961 153 ----------------PKERRGLVLIDPPFELKDEY-------------------QRVVEALAEAYKRFA-TGTY----A 192 (279)
T ss_pred ----------------CCCcceEEEeCCCcccccHH-------------------HHHHHHHHHHHHhhc-CceE----E
Confidence 11234579999994322211 111223444444433 3432 3
Q ss_pred CCCCcCcHHHHHHHHHHCC
Q 004775 237 SMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~ 255 (731)
=+.|+-+-..+..++++..
T Consensus 193 iWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 193 IWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred EEEeecchHHHHHHHHHHh
Confidence 4579999999999998754
No 431
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=28.14 E-value=4.2e+02 Score=28.06 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=28.4
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
+.+.++..||-.+| |+-...+++++... ...|++.+.+..+...+
T Consensus 158 ~~~~~~~~vlI~g~--g~iG~~~~~~a~~~-------G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 158 AGPRPGERVAVLGI--GGLGHLAVQYARAM-------GFETVAITRSPDKRELA 202 (330)
T ss_pred hCCCCCCEEEEECC--CHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 45678999999844 44444444443321 23688888888887665
No 432
>PRK12742 oxidoreductase; Provisional
Probab=28.08 E-value=4.4e+02 Score=26.34 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=24.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLL 127 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L 127 (731)
+.+||= --|.|+....+++.+... ...|+.... +..+++.+
T Consensus 6 ~k~vlI-tGasggIG~~~a~~l~~~-------G~~v~~~~~~~~~~~~~l 47 (237)
T PRK12742 6 GKKVLV-LGGSRGIGAAIVRRFVTD-------GANVRFTYAGSKDAAERL 47 (237)
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHH
Confidence 567774 455778888888887652 235666544 44554443
No 433
>PRK06196 oxidoreductase; Provisional
Probab=27.92 E-value=3.9e+02 Score=28.60 Aligned_cols=58 Identities=7% Similarity=-0.008 Sum_probs=37.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+.+||=.+ |.|+...+++..|... ...|++.+.+..+...+...+. .+.+...|..+.
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~-------G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~ 83 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQA-------GAHVIVPARRPDVAREALAGID-----GVEVVMLDLADL 83 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCH
Confidence 55676555 5577888888877652 2478888998887766554443 245556665543
No 434
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=27.84 E-value=3.1e+02 Score=29.29 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=30.6
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
..+++|.+||=. + .|+....+++++... +-..|++.+.+..|...+.
T Consensus 163 ~~~~~~~~vlI~-g-~g~vg~~~~~~a~~~------g~~~v~~~~~~~~~~~~~~ 209 (344)
T cd08284 163 AQVRPGDTVAVI-G-CGPVGLCAVLSAQVL------GAARVFAVDPVPERLERAA 209 (344)
T ss_pred cCCccCCEEEEE-C-CcHHHHHHHHHHHHc------CCceEEEEcCCHHHHHHHH
Confidence 345788888876 3 577666666665541 1126888888888876543
No 435
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=27.74 E-value=3.3e+02 Score=29.40 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=28.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
...+++|++||= .|.|+....+++..... +...|++.|.+..+...+.
T Consensus 169 ~~~~~~g~~vlI--~g~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~ 216 (350)
T cd08256 169 RANIKFDDVVVL--AGAGPLGLGMIGAARLK------NPKKLIVLDLKDERLALAR 216 (350)
T ss_pred hcCCCCCCEEEE--ECCCHHHHHHHHHHHHc------CCcEEEEEcCCHHHHHHHH
Confidence 345678988876 34465544444433321 1246889999888876543
No 436
>PRK07890 short chain dehydrogenase; Provisional
Probab=27.65 E-value=5.2e+02 Score=26.17 Aligned_cols=62 Identities=6% Similarity=-0.000 Sum_probs=41.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.+ |.|+...+++..+... .-.|+..+.+......+...+...+. ++.....|..+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARA-------GADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITD 65 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCC
Confidence 356777444 5677788888887652 24788999998888777766655442 45556666544
No 437
>PRK06484 short chain dehydrogenase; Validated
Probab=27.50 E-value=4e+02 Score=30.66 Aligned_cols=132 Identities=9% Similarity=0.027 Sum_probs=66.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.|..+|= .-|.|+....++..|... ...|+..+.+..++..+.... +. .+.....|..+...+.-
T Consensus 268 ~~k~~lI-tGas~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~--- 332 (520)
T PRK06484 268 SPRVVAI-TGGARGIGRAVADRFAAA-------GDRLLIIDRDAEGAKKLAEAL---GD-EHLSVQADITDEAAVES--- 332 (520)
T ss_pred CCCEEEE-ECCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh---CC-ceeEEEccCCCHHHHHH---
Confidence 4566664 445677788888877652 248999999888877665432 32 23344555544221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC-Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD-GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd-Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...........+|.++..+-.... +.+ ...++.|.. ....++. --..+++.++..++.+|+||+.+
T Consensus 333 --------~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~---~~~~n~~-~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 333 --------AFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTR---VYDVNLS-GAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHH---HHHhCcH-HHHHHHHHHHHHhccCCEEEEEC
Confidence 000011112468988875532211 111 112233332 1111111 12234555666667789988764
Q ss_pred C
Q 004775 236 C 236 (731)
Q Consensus 236 C 236 (731)
.
T Consensus 401 S 401 (520)
T PRK06484 401 S 401 (520)
T ss_pred c
Confidence 3
No 438
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=27.41 E-value=1.3e+02 Score=30.62 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=63.7
Q ss_pred cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEecccccCCCcccCCCCCCCCccccc
Q 004775 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT-KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 167 (731)
Q Consensus 89 PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~-kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~ 167 (731)
.++....+|+.+... ...|+.++.+.+.+....+.+ +..+.. +...|...-..+. ...
T Consensus 5 s~GiG~aia~~l~~~-------Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~~~~v~-----------~~~ 63 (241)
T PF13561_consen 5 SSGIGRAIARALAEE-------GANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSDEESVE-----------ALF 63 (241)
T ss_dssp TSHHHHHHHHHHHHT-------TEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTSHHHHH-----------HHH
T ss_pred CCChHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcchHHHH-----------HHH
Confidence 467778888887753 468999999999864444443 445532 4666654321110 000
Q ss_pred ccccccc-ccccEEEecCCCCCCCccccC-hhh-hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 168 SESNMGQ-LLFDRVLCDVPCSGDGTLRKA-PDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 168 ~~~~~~~-~~FDrIL~D~PCSGdGtlrk~-pd~-~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....... ..+|.++..+.-+......+. .+. +..|...-.. ...-...+++.++.+++.+|.+|+.+
T Consensus 64 ~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 64 DEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDI-NVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp HHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccccc
Confidence 0111223 678988764421111000010 011 1222211111 11234567777888889999988754
No 439
>PRK05650 short chain dehydrogenase; Provisional
Probab=27.26 E-value=6.1e+02 Score=26.13 Aligned_cols=59 Identities=5% Similarity=-0.058 Sum_probs=39.0
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+||= ..|.|+....++..|... .-.|++.+.+..+...+...++..+. ++.+...|..+
T Consensus 2 ~vlV-tGasggIG~~la~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMI-TGAASGLGRAIALRWARE-------GWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRD 60 (270)
T ss_pred EEEE-ecCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 3453 345777788888877652 24788899998888777776665543 35555666654
No 440
>PRK05875 short chain dehydrogenase; Provisional
Probab=27.13 E-value=5.6e+02 Score=26.39 Aligned_cols=62 Identities=5% Similarity=-0.034 Sum_probs=40.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+...++++.+... .-.|++.+.+..+...+...+...+ ..++.+...|..+
T Consensus 7 ~k~vlItGa-sg~IG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTGG-GSGIGKGVAAGLVAA-------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 567776664 577888888877652 2378889988877766666554432 2356666666554
No 441
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=26.89 E-value=6.8e+02 Score=25.42 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=39.6
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~ni~vt~~Da~~ 148 (731)
..||=.++ .|+...+++..|... .-.|+.+|.+..+...+...++.. +..++.+...|..+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~-------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEE-------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 45666664 577788888877652 247888999888777666655432 22346666666654
No 442
>PRK09186 flagellin modification protein A; Provisional
Probab=26.82 E-value=3.6e+02 Score=27.35 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR-lg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|+..+.+..++..+...+.. .+...+.++..|..+
T Consensus 4 ~k~vlItG-as~giG~~~a~~l~~~-------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILITG-AGGLIGSALVKAILEA-------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 45566545 4677888888888652 34788888888887777666543 233344555666655
No 443
>PRK07062 short chain dehydrogenase; Provisional
Probab=26.69 E-value=5.3e+02 Score=26.40 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=41.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~f 149 (731)
|..+|=.+| .|+...+++..+... ...|++.+.+..++..+.+.+.... ..++.+...|..+.
T Consensus 8 ~k~~lItGa-s~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 71 (265)
T PRK07062 8 GRVAVVTGG-SSGIGLATVELLLEA-------GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE 71 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence 556776665 456677788777642 3478999999988887777665432 23455666666553
No 444
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.64 E-value=6.8e+02 Score=25.67 Aligned_cols=94 Identities=3% Similarity=-0.055 Sum_probs=48.6
Q ss_pred CCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeC-----------CHHHHHHHHHHHHHcCCCceEEEecc
Q 004775 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDL-----------DVQRCNLLIHQTKRMCTANLIVTNHE 145 (731)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDi-----------d~~R~~~L~~n~kRlg~~ni~vt~~D 145 (731)
.|.+||=.+|.. |+...+++..+... ...|+..+. +......+.+.++..+. .+.+...|
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~-------G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D 76 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEA-------GADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELD 76 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHC-------CCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcC
Confidence 366788888874 57777887777642 235655542 12333344455555553 45556666
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG 190 (731)
..+...+.- ............|.|+..+-+...+
T Consensus 77 ~~~~~~i~~-----------~~~~~~~~~g~id~li~~ag~~~~~ 110 (256)
T PRK12859 77 LTQNDAPKE-----------LLNKVTEQLGYPHILVNNAAYSTNN 110 (256)
T ss_pred CCCHHHHHH-----------HHHHHHHHcCCCcEEEECCCCCCCC
Confidence 554221100 0000011124579999887654443
No 445
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=26.58 E-value=3.8e+02 Score=28.41 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCCCEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+++|++||=.++ +-|..+.++|..++ ..|++.+.+..+...+ +.+|..
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G----------~~v~~~~~~~~~~~~~----~~~g~~ 187 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG----------AKLIGTVGSAQKAQRA----KKAGAW 187 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHH----HHCCCC
Confidence 5678998885532 23333444444432 3588888888887766 346653
No 446
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.52 E-value=4e+02 Score=27.67 Aligned_cols=50 Identities=18% Similarity=0.022 Sum_probs=28.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+|+.||=.++ +|+....++++.... ...|++.+.+..+...++ .+|..
T Consensus 130 ~~~~~~vli~g~-~~~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~~----~~g~~ 179 (305)
T cd08270 130 PLLGRRVLVTGA-SGGVGRFAVQLAALA-------GAHVVAVVGSPARAEGLR----ELGAA 179 (305)
T ss_pred CCCCCEEEEECC-CcHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH----HcCCc
Confidence 345888886555 344433333333321 246888888888877664 35654
No 447
>PRK06500 short chain dehydrogenase; Provisional
Probab=26.34 E-value=4.2e+02 Score=26.62 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=34.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||= .-|.|+...++++.+... .-.|++.+.+...+..+.. +++. ++.+...|..+
T Consensus 6 ~k~vlI-tGasg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~---~~~~-~~~~~~~D~~~ 63 (249)
T PRK06500 6 GKTALI-TGGTSGIGLETARQFLAE-------GARVAITGRDPASLEAARA---ELGE-SALVIRADAGD 63 (249)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHC-------CCEEEEecCCHHHHHHHHH---HhCC-ceEEEEecCCC
Confidence 445554 445677788888877652 2378888888766554433 3332 34444555443
No 448
>PRK06125 short chain dehydrogenase; Provisional
Probab=26.21 E-value=5e+02 Score=26.58 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=40.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..+... ...|++.+.+..+...+...+......++.+...|..+
T Consensus 7 ~k~vlItG-~~~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 7 GKRVLITG-ASKGIGAAAAEAFAAE-------GCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 55666555 4566788888777642 24899999998888777766654433345555555543
No 449
>PRK07806 short chain dehydrogenase; Provisional
Probab=26.11 E-value=5.6e+02 Score=25.84 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||-.+ |.|+...+++..+... .-.|++.+.+. .+...+...++..+ .++.+...|..+...+.-
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~-------G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~--- 73 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGA-------GAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAA--- 73 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHH---
Confidence 45777655 4567788888877642 23677776653 45555555444433 245566666654221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...........+|.|+..+. .+... +..|......++ .-...+++.+.+.++.+|++|+.+
T Consensus 74 --------~~~~~~~~~~~~d~vi~~ag---~~~~~-----~~~~~~~~~vn~-~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 74 --------LMDTAREEFGGLDALVLNAS---GGMES-----GMDEDYAMRLNR-DAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred --------HHHHHHHhCCCCcEEEECCC---CCCCC-----CCCcceeeEeee-HHHHHHHHHHHhhccCCceEEEEe
Confidence 00000011135788876542 11100 001111111111 223567777887777778888763
No 450
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.80 E-value=5.9e+02 Score=27.14 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=26.7
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k 132 (731)
+|-=+++ |.....+|..+... .-.|+..|.++.++..+...+.
T Consensus 6 kI~vIGa--G~mG~~iA~~la~~-------G~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 6 KVGVIGA--GQMGNGIAHVCALA-------GYDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred EEEEECC--cHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHH
Confidence 3443444 55555666665431 2379999999999887655443
No 451
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.72 E-value=4.6e+02 Score=24.76 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=32.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
.+.+||=++| |+-+..++..|... +...|+-...+..|+..|.+.+
T Consensus 11 ~~~~vlviGa--Gg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIGA--GGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TTSEEEEESS--SHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHc
Confidence 4778998888 55556666666542 2356777779999998887766
No 452
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.62 E-value=7e+02 Score=25.08 Aligned_cols=135 Identities=10% Similarity=0.014 Sum_probs=63.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvA-nDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+ |.|+...+++..+... ...|+. ...+......+...++..+. ++.+...|......+.-
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~--- 73 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKE-------GSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCET--- 73 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHH---
Confidence 45777655 4667788888877642 224443 33444444444444444443 34455555544221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
...........+|.|+.-+.....+.+.. ..+.|..+-..+. .....++..+++.++.+|++|+.+.
T Consensus 74 --------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~----~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 74 --------LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDF----KSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhC----HHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 00000011246799988554333332211 1112222111111 1234456667777777899998754
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 142 ~ 142 (252)
T PRK06077 142 V 142 (252)
T ss_pred h
Confidence 3
No 453
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=25.50 E-value=5.9e+02 Score=27.22 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=38.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|+..+.+..+...+...+.. ...++.+...|..+
T Consensus 6 ~k~vlVTG-as~gIG~~~a~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~Dl~~ 66 (322)
T PRK07453 6 KGTVIITG-ASSGVGLYAAKALAKR-------GWHVIMACRNLKKAEAAAQELGI-PPDSYTIIHIDLGD 66 (322)
T ss_pred CCEEEEEc-CCChHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHhhc-cCCceEEEEecCCC
Confidence 45566554 5677888888877652 24788889888887766655432 12245556666554
No 454
>PRK05866 short chain dehydrogenase; Provisional
Probab=25.40 E-value=3.3e+02 Score=28.94 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=40.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||= .-|.|+...++++.+... .-.|++.+.+..++..+...+...+. .+.+...|..+
T Consensus 40 ~k~vlI-tGasggIG~~la~~La~~-------G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRILL-TGASSGIGEAAAEQFARR-------GATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSD 100 (293)
T ss_pred CCEEEE-eCCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 455664 445677888888887652 24789999999888877776655443 34455566554
No 455
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.39 E-value=3.1e+02 Score=29.23 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=26.8
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k 132 (731)
|.|.....+|..+... .-.|+..|.++.+++.+..++.
T Consensus 8 G~G~mG~~iA~~la~~-------G~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 8 GAGVMGRGIAYVFAVS-------GFQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred CccHHHHHHHHHHHhC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 4466666777766542 2369999999999988876543
No 456
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=25.31 E-value=7e+02 Score=29.35 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=67.3
Q ss_pred CCCC-EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 77 QPDH-FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~-~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+|-. ++|=++||-=-.+.++ -.. +---|+.+|+|.-+++.+...-. ...+-..++..|....
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~l----y~~------G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l------ 108 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHL----YKN------GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQL------ 108 (482)
T ss_pred chhhceeEeecCCCCHHHHHH----Hhc------CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhc------
Confidence 4555 8888888765433333 221 12368999999999887655332 2233455666655442
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.+....||+||.=. +.|.++.-.++.|.. ..-.+.+....+++++||+.+-.|
T Consensus 109 ---------------~fedESFdiVIdkG--tlDal~~de~a~~~~----------~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 109 ---------------VFEDESFDIVIDKG--TLDALFEDEDALLNT----------AHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ---------------cCCCcceeEEEecC--ccccccCCchhhhhh----------HHhhHHHhhHHHHhccCCEEEEEE
Confidence 12346788877411 222222222333321 112345777889999999988777
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
|--
T Consensus 162 l~~ 164 (482)
T KOG2352|consen 162 LVQ 164 (482)
T ss_pred eee
Confidence 754
No 457
>PRK05854 short chain dehydrogenase; Provisional
Probab=25.24 E-value=6.4e+02 Score=27.04 Aligned_cols=63 Identities=10% Similarity=0.062 Sum_probs=41.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~f 149 (731)
|.+||= .-|.|+....++..|... ...|+....+..+...+...+.... ..++.+...|...+
T Consensus 14 gk~~lI-TGas~GIG~~~a~~La~~-------G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 14 GKRAVV-TGASDGLGLGLARRLAAA-------GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 556664 445677788888877642 3478888898888877776665432 23466667776654
No 458
>PRK07024 short chain dehydrogenase; Provisional
Probab=25.19 E-value=4.5e+02 Score=26.89 Aligned_cols=58 Identities=7% Similarity=-0.031 Sum_probs=37.3
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+||= .-|.|+...+++..|... .-.|+..+.+..++..+...+...+ ++.+...|..+
T Consensus 4 ~vlI-tGas~gIG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVFI-TGASSGIGQALAREYARQ-------GATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRD 61 (257)
T ss_pred EEEE-EcCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCC
Confidence 4443 445778888888888652 2378889998887766555443222 55666666654
No 459
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=25.16 E-value=2.1e+02 Score=31.68 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=79.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCcc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~~ 153 (731)
.-++||=++-|-|+..-.. .+|.. =+.+.-+|+|..-++.-+.-+..+ .-+.+.+.-+|+..|-..
T Consensus 121 npkkvlVVgggDggvlrev--ikH~~-------ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~- 190 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREV--IKHKS-------VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED- 190 (337)
T ss_pred CCCeEEEEecCCccceeee--ecccc-------ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-
Confidence 3468999999999864433 33431 467888888877766655554433 235577777787765321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.....||+|++|-. | -.+......|.....-..+.||+||.++-
T Consensus 191 ------------------~~~~~~dVii~dss---d---------------pvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 191 ------------------LKENPFDVIITDSS---D---------------PVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred ------------------hccCCceEEEEecC---C---------------ccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 12368999999853 1 11234566788888888999999998853
Q ss_pred EeCCCCCcCcHHHHHHHHHH
Q 004775 234 STCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~ 253 (731)
. .|...+-..+++.
T Consensus 235 ----q--~ec~wl~~~~i~e 248 (337)
T KOG1562|consen 235 ----Q--GECMWLHLDYIKE 248 (337)
T ss_pred ----e--cceehHHHHHHHH
Confidence 2 3555555555543
No 460
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=25.10 E-value=4.1e+02 Score=28.27 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=35.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|....+++..|... .-.|++...+......+.+.....+. .++.+...|..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 67 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFR-------GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD 67 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHC-------CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC
Confidence 56677555 6788899999888752 23676666665544333222211121 345666666654
No 461
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=24.65 E-value=4.7e+02 Score=27.08 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=18.8
Q ss_pred CCCEEEeeccC-cchHHHHHHHHhhc
Q 004775 78 PDHFVLDMCAA-PGSKTFQLLEIIHQ 102 (731)
Q Consensus 78 pg~~VLDmCAA-PGsKT~qLae~l~~ 102 (731)
.|..||=.+|+ .++....++..+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~ 30 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA 30 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH
Confidence 36678877875 57888888888765
No 462
>PRK05855 short chain dehydrogenase; Validated
Probab=24.58 E-value=4.2e+02 Score=30.46 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=41.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.++|=.+ |+|+...+++..|... .-.|+.++.+..++..+...++..+. ++.+...|..+
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 375 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFARE-------GAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSD 375 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 45666555 4677788888887652 23688889998888877776665554 45666667655
No 463
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=24.52 E-value=3.4e+02 Score=28.64 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.0
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
.+.+++.||=.++ +|+-...++++.... ...|++.+.+..+...+..
T Consensus 142 ~~~~~~~vlI~g~-~g~ig~~~~~~a~~~-------G~~vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 142 KPKPGETVVVSAA-AGAVGSVVGQIAKLL-------GARVVGIAGSDEKCRWLVE 188 (329)
T ss_pred CCCCCCEEEEecC-cchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHh
Confidence 4678888885553 344444444444331 2478888888888776643
No 464
>PRK06940 short chain dehydrogenase; Provisional
Probab=24.49 E-value=4.7e+02 Score=27.36 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=37.1
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.||=.+ | |+...++++.|.. ...|++.|.+..++..+.+.++..+. ++.+...|..+
T Consensus 4 ~~lItG-a-~gIG~~la~~l~~--------G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 60 (275)
T PRK06940 4 VVVVIG-A-GGIGQAIARRVGA--------GKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSS 60 (275)
T ss_pred EEEEEC-C-ChHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 344334 3 6788899988842 35788899988877766666654432 45556666655
No 465
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=24.47 E-value=5.8e+02 Score=24.69 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=59.9
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccc
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 167 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~ 167 (731)
|.|.-...++..|... .-.|++.|.++.++..+... + +.+. .+...
T Consensus 8 GlG~mG~~~a~~L~~~-------g~~v~~~d~~~~~~~~~~~~----g---~~~~-~s~~e------------------- 53 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKA-------GYEVTVYDRSPEKAEALAEA----G---AEVA-DSPAE------------------- 53 (163)
T ss_dssp --SHHHHHHHHHHHHT-------TTEEEEEESSHHHHHHHHHT----T---EEEE-SSHHH-------------------
T ss_pred chHHHHHHHHHHHHhc-------CCeEEeeccchhhhhhhHHh----h---hhhh-hhhhh-------------------
Confidence 5677788888887652 34789999999998877653 2 2221 11111
Q ss_pred cccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH--HHhhccCCCEEEEEeCCCCCcCcHH
Q 004775 168 SESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR--GISLLKVGGRIVYSTCSMNPVENEA 245 (731)
Q Consensus 168 ~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r--Al~lLKpGG~LVYSTCSl~p~ENEa 245 (731)
--...|+|++=+| +++. -..++.. .+..|++ |.++.-+.|..|.+-.+
T Consensus 54 -----~~~~~dvvi~~v~---------~~~~---------------v~~v~~~~~i~~~l~~-g~iiid~sT~~p~~~~~ 103 (163)
T PF03446_consen 54 -----AAEQADVVILCVP---------DDDA---------------VEAVLFGENILAGLRP-GKIIIDMSTISPETSRE 103 (163)
T ss_dssp -----HHHHBSEEEE-SS---------SHHH---------------HHHHHHCTTHGGGS-T-TEEEEE-SS--HHHHHH
T ss_pred -----HhhcccceEeecc---------cchh---------------hhhhhhhhHHhhcccc-ceEEEecCCcchhhhhh
Confidence 0134588987444 1111 1234444 5677777 55555666777777766
Q ss_pred HHHHHHHHCCCcEEEEec
Q 004775 246 VVAEILRKCEGSVELVDV 263 (731)
Q Consensus 246 VV~~~L~~~~g~~elvd~ 263 (731)
+- +.+...+ +..+|.
T Consensus 104 ~~-~~~~~~g--~~~vda 118 (163)
T PF03446_consen 104 LA-ERLAAKG--VRYVDA 118 (163)
T ss_dssp HH-HHHHHTT--EEEEEE
T ss_pred hh-hhhhhcc--ceeeee
Confidence 64 4455544 777887
No 466
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.37 E-value=7.5e+02 Score=25.41 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=42.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.++ .|+...++++.|... ...|+..+.+......+...++..+. .+.+...|..+
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 70 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEA-------GADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAH 70 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 4667877775 677788888877642 34889999998887777766655442 45555566554
No 467
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=24.37 E-value=4.6e+02 Score=28.07 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=31.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
+.++++++||=.+ +|+-...++++.... ...|++.+.+..|...+. .+|.
T Consensus 159 ~~~~~~~~vlV~g--~g~iG~~~~~~a~~~-------G~~vi~~~~~~~~~~~~~----~~g~ 208 (333)
T cd08296 159 SGAKPGDLVAVQG--IGGLGHLAVQYAAKM-------GFRTVAISRGSDKADLAR----KLGA 208 (333)
T ss_pred cCCCCCCEEEEEC--CcHHHHHHHHHHHHC-------CCeEEEEeCChHHHHHHH----HcCC
Confidence 3567899988876 355544444444321 236889999988877663 3565
No 468
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=24.36 E-value=4.8e+02 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=28.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
..++++..||=.++ +|+-...++++.... ...|++.+.+..+...+
T Consensus 138 ~~~~~~~~vlI~g~-~~~~g~~~~~la~~~-------g~~v~~~~~~~~~~~~~ 183 (324)
T cd08244 138 ATLTPGDVVLVTAA-AGGLGSLLVQLAKAA-------GATVVGAAGGPAKTALV 183 (324)
T ss_pred cCCCCCCEEEEEcC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 45678888876554 444444444433321 24688888888887765
No 469
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=24.28 E-value=23 Score=41.39 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=13.6
Q ss_pred EEeeccCcchHHHHHH
Q 004775 82 VLDMCAAPGSKTFQLL 97 (731)
Q Consensus 82 VLDmCAAPGsKT~qLa 97 (731)
.-||||||||++-.++
T Consensus 271 FaDvCAGPGGFSEYvL 286 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVL 286 (845)
T ss_pred HHhhhcCCCccchhhh
Confidence 4589999999998875
No 470
>PRK07060 short chain dehydrogenase; Provisional
Probab=24.19 E-value=6e+02 Score=25.42 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
.+.++| +..|.|+...+++..+... .-.|+.++.+.+++..+.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~-------g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQR-------GARVVAAARNAAALDRLA 50 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHH
Confidence 355677 4555677788888877642 236888998887765444
No 471
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=24.18 E-value=5e+02 Score=27.80 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+|++||=.++|+ |..+.++|..++ ...|++.+.+..+..++. .+|..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~----~lg~~ 210 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG---------ARHVVITDVNEYRLELAR----KMGAT 210 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4788888754432 334455555432 225777788887776553 35653
No 472
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=24.03 E-value=3.9e+02 Score=28.46 Aligned_cols=47 Identities=15% Similarity=0.002 Sum_probs=27.4
Q ss_pred CCCEEEeeccCcchH---HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 78 PDHFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 78 pg~~VLDmCAAPGsK---T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
++..||=.-.|+|+- ++|+|..+ ...|++.+.+..|...+++ +|...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~----------G~~vi~~~~~~~~~~~~~~----~g~~~ 191 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD----------GIKVINIVRRKEQVDLLKK----IGAEY 191 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH----cCCcE
Confidence 454555333444444 44555443 2368999999988877643 66543
No 473
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=23.52 E-value=3e+02 Score=29.33 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.+.++.+||=.++ |+-...++++.... +...|++.+.+..+...+
T Consensus 164 ~~~~~~~vlI~g~--~~vg~~~~~~a~~~------g~~~v~~~~~~~~~~~~~ 208 (340)
T cd05284 164 YLDPGSTVVVIGV--GGLGHIAVQILRAL------TPATVIAVDRSEEALKLA 208 (340)
T ss_pred cCCCCCEEEEEcC--cHHHHHHHHHHHHh------CCCcEEEEeCCHHHHHHH
Confidence 3567888887763 33444444443321 114788888888887755
No 474
>PRK07985 oxidoreductase; Provisional
Probab=23.42 E-value=5.4e+02 Score=27.33 Aligned_cols=62 Identities=6% Similarity=-0.076 Sum_probs=36.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid--~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.+| .|+...+++..|... ...|+..+.+ ......+...+...+. .+.++..|..+
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~-------G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 111 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYARE-------GADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSD 111 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHC-------CCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCC
Confidence 3567887775 567788888887652 2356666643 3344555544444443 35555666654
No 475
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.39 E-value=98 Score=31.40 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=38.7
Q ss_pred ccCcEEecCccccchhhhcC-C--CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004775 56 EIGNITRQEAVSMVPPLFLD-V--QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd-~--~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k 132 (731)
.+|++..-...-.++...|. + -.|.+||.+++|==+.+-.|+.. ..|...|.--|-+.+.++-+..-..
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~--------~a~~~~v~ltdgne~svrnv~ki~~ 75 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIAC--------KAPDSSVWLTDGNEESVRNVEKIRN 75 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheee--------ecCCceEEEecCCHHHHHHHHHHHh
Confidence 45666665444445544442 2 24678888886643332222211 1245678888888887766655443
Q ss_pred H
Q 004775 133 R 133 (731)
Q Consensus 133 R 133 (731)
+
T Consensus 76 ~ 76 (201)
T KOG3201|consen 76 S 76 (201)
T ss_pred c
Confidence 3
No 476
>PRK05884 short chain dehydrogenase; Provisional
Probab=23.34 E-value=3.8e+02 Score=27.09 Aligned_cols=37 Identities=5% Similarity=-0.065 Sum_probs=25.0
Q ss_pred cCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
.|.|+....+++.+... .-.|+..+.+..++..+.+.
T Consensus 7 Gas~giG~~ia~~l~~~-------g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 7 GGDTDLGRTIAEGFRND-------GHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred eCCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHh
Confidence 34566777888877642 24788889988877655443
No 477
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=23.30 E-value=7.7e+02 Score=25.27 Aligned_cols=62 Identities=6% Similarity=-0.048 Sum_probs=35.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+....++..+... ...|+.. ..+..++..+...++......+.+...|..+
T Consensus 8 ~k~vlItGa-s~gIG~~ia~~l~~~-------G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (260)
T PRK08416 8 GKTLVISGG-TRGIGKAIVYEFAQS-------GVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE 70 (260)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 556765554 566677777777642 2245544 4566666666555543222345666667655
No 478
>PRK12743 oxidoreductase; Provisional
Probab=23.26 E-value=5.7e+02 Score=26.11 Aligned_cols=60 Identities=3% Similarity=-0.063 Sum_probs=37.1
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+||=.+| .|+...++++.+... .-.|+.+ ..+..+...+...++..+. ++.+...|..+
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 63 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQ-------GFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSD 63 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 45666665 566788888887652 2355555 4566677777776666653 45566666554
No 479
>PRK07109 short chain dehydrogenase; Provisional
Probab=23.06 E-value=7e+02 Score=27.17 Aligned_cols=61 Identities=7% Similarity=-0.015 Sum_probs=41.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..||=.+ |.|+....++..+... ...|+..+.+..++..+.+.++..+. ++.++..|..+
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~-------G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARR-------GAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVAD 68 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCC
Confidence 44565555 5567777787777542 24788899999988888887776654 45556666654
No 480
>PRK06128 oxidoreductase; Provisional
Probab=22.98 E-value=5.5e+02 Score=27.19 Aligned_cols=132 Identities=9% Similarity=-0.023 Sum_probs=63.0
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid--~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
+.+||=.+| .|+....++..|... ...|+....+ ......+...++..+. .+.+...|..+...+.-
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~-------G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~-- 123 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFARE-------GADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQ-- 123 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHc-------CCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHH--
Confidence 567776664 566778888877652 2355555443 2334444444444443 34555566554221100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCC-CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG-dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
............|.|+..+--.. .+.+. -.++.|...-.. ++ .-...+++.++..++.||++|+.
T Consensus 124 ---------~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~---N~-~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 124 ---------LVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKT---NV-YAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred ---------HHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHH---Hh-HHHHHHHHHHHHhcCcCCEEEEE
Confidence 00000011246798887553111 11110 112223221111 11 12345677777888888999885
No 481
>PRK08628 short chain dehydrogenase; Provisional
Probab=22.67 E-value=6.5e+02 Score=25.56 Aligned_cols=60 Identities=3% Similarity=-0.020 Sum_probs=35.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+..||=.+ |.|+...+++..|... ...|+.++.+.... .+...++..+. ++.+...|..+
T Consensus 7 ~~~ilItG-asggiG~~la~~l~~~-------G~~v~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~D~~~ 66 (258)
T PRK08628 7 DKVVIVTG-GASGIGAAISLRLAEE-------GAIPVIFGRSAPDD-EFAEELRALQP-RAEFVQVDLTD 66 (258)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHc-------CCcEEEEcCChhhH-HHHHHHHhcCC-ceEEEEccCCC
Confidence 44566555 4677788888777642 23677777777665 33344444443 45566666554
No 482
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=22.64 E-value=2.6e+02 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=17.0
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHh
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEII 100 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l 100 (731)
..+++|++||=.+++ -|..++++|..+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~ 163 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAAR 163 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHC
Confidence 467889998876542 344455555554
No 483
>PRK05872 short chain dehydrogenase; Provisional
Probab=22.45 E-value=6.4e+02 Score=26.66 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=32.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
.|.+||=.+ |.|+...++++.+... ...|+..+.+..++..+.+.+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHAR-------GAKLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh
Confidence 366777555 4567788888887652 247888999988877665544
No 484
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=22.33 E-value=3.8e+02 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=28.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
..+++|.+||-.+ + |+-...+++++... +...|++.+.+..+...+
T Consensus 178 ~~~~~g~~vLI~g-~-g~vG~a~i~lak~~------G~~~Vi~~~~~~~~~~~~ 223 (363)
T cd08279 178 ARVRPGDTVAVIG-C-GGVGLNAIQGARIA------GASRIIAVDPVPEKLELA 223 (363)
T ss_pred cCCCCCCEEEEEC-C-CHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHH
Confidence 3567899999883 3 55443333433321 122488888888887765
No 485
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=22.20 E-value=8.6e+02 Score=24.93 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=39.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.+++ |+...+++..|... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~-------G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKA-------GATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 34566655554 56677777766542 34678888988888777777665543 35556666654
No 486
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=22.19 E-value=8.1e+02 Score=24.82 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=41.3
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.+| .|+....++..+... .-.|+.++.+...+..+...++..+. ++.+...|..+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGA-------GAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHc-------CCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 3667776664 566677787776542 34789999998877777766665543 35566666554
No 487
>PRK08589 short chain dehydrogenase; Validated
Probab=22.06 E-value=7.4e+02 Score=25.67 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=37.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..+... ...|++++.+ .++..+...++..+. ++.+...|..+
T Consensus 6 ~k~vlItG-as~gIG~aia~~l~~~-------G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 65 (272)
T PRK08589 6 NKVAVITG-ASTGIGQASAIALAQE-------GAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISD 65 (272)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 45566444 4566778888777652 3478888988 666666666654432 35555566554
No 488
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=21.71 E-value=1e+02 Score=29.78 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=27.0
Q ss_pred HhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHH
Q 004775 508 KTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDA 546 (731)
Q Consensus 508 ~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~vs~~vk~i 546 (731)
++|-|.. -+|-.+.++||+. | |.+||.|.-.++.
T Consensus 7 CsFcG~k-IyPG~G~~fVR~D-G---kvf~FcssKC~k~ 40 (131)
T PRK14891 7 CDYTGEE-IEPGTGTMFVRKD-G---TVLHFVDSKCEKN 40 (131)
T ss_pred ecCcCCc-ccCCCCcEEEecC-C---CEEEEecHHHHHH
Confidence 4565555 6899999999997 5 8999999888755
No 489
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=21.58 E-value=1.9e+02 Score=32.48 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=35.9
Q ss_pred hcCCCCCCEEEeeccCcchH-HHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsK-T~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++||+.|-=.++|-=+. +.|-|.+. ..++|+|+|+++.++++++ .+|..
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~a---------gA~~IiAvD~~~~Kl~~A~----~fGAT 232 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAA---------GAGRIIAVDINPEKLELAK----KFGAT 232 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHc---------CCceEEEEeCCHHHHHHHH----hcCCc
Confidence 45789999988777654333 33333332 3689999999999998654 46654
No 490
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=21.51 E-value=4.8e+02 Score=27.16 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=31.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
...+++|..||=.+ +|+....++++.... +...|++...+..+..++ +.+|.
T Consensus 124 ~~~~~~~~~vlI~g--~g~vg~~~~~la~~~------g~~~v~~~~~~~~~~~~~----~~~g~ 175 (312)
T cd08269 124 RGWIRAGKTVAVIG--AGFIGLLFLQLAAAA------GARRVIAIDRRPARLALA----RELGA 175 (312)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHH----HHhCC
Confidence 34567888888873 466555555554431 112378888777776633 34565
No 491
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=21.49 E-value=6e+02 Score=27.31 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=28.3
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
+++.+||-.+ +|+....++++.... +...|++.+.+..|...+
T Consensus 174 ~~~~~vlI~g--~g~vg~~~~~~a~~~------G~~~v~~~~~~~~~~~~~ 216 (350)
T cd08240 174 VADEPVVIIG--AGGLGLMALALLKAL------GPANIIVVDIDEAKLEAA 216 (350)
T ss_pred CCCCEEEEEC--CcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHH
Confidence 4788998873 466655555554431 123688888888887766
No 492
>PRK06101 short chain dehydrogenase; Provisional
Probab=21.00 E-value=7.3e+02 Score=25.11 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=35.1
Q ss_pred eccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 85 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 85 mCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+..|+|+...++++.|... .-.|++.+.+..++..+... + .++.+...|..+.
T Consensus 6 ItGas~giG~~la~~L~~~-------G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~ 58 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQ-------GWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDH 58 (240)
T ss_pred EEcCCcHHHHHHHHHHHhC-------CCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCH
Confidence 4566788899999888652 24688999988876655432 1 2455556666553
No 493
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=20.77 E-value=7e+02 Score=25.54 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=28.0
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
..+++|..||=.++ +|+-...++++.... ...|++.+.+..+...+
T Consensus 132 ~~~~~g~~vlI~g~-~g~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 132 YPVKPGDTVLVHAA-AGGVGLLLTQWAKAL-------GATVIGTVSSEEKAELA 177 (320)
T ss_pred cCCCCCCEEEEEcC-CchHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHH
Confidence 34678888886654 344433333333321 24688888888887765
No 494
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.70 E-value=6.3e+02 Score=26.98 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=30.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
..+++|..||=.+ .|+-...++++.... +...|++.+.+..+..++. .+|.
T Consensus 164 ~~~~~g~~vlI~g--~g~vg~~~~~lak~~------G~~~v~~~~~~~~~~~~~~----~~ga 214 (345)
T cd08287 164 AGVRPGSTVVVVG--DGAVGLCAVLAAKRL------GAERIIAMSRHEDRQALAR----EFGA 214 (345)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCC
Confidence 4567888887743 455555444444331 1235889998887765443 4565
No 495
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=20.69 E-value=1.3e+02 Score=31.99 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
-..+.|..++-||||.|-.|+++ ...++..+++|.....-|.+...... ....+...|+-.|
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a----------~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNA----------DVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred cccceeEEecCCCCchhHHHHhc----------chhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 35689999999999999998765 23578888999988888877655222 2455556666544
No 496
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=20.61 E-value=1.1e+03 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=25.1
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
|.|.-.+.+|.++.. .-.|+++|+++.+++.+..
T Consensus 7 GlGyvGl~~A~~lA~--------G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ--------NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHh--------CCcEEEEECCHHHHHHHHc
Confidence 667776777755532 1369999999999988865
No 497
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=20.60 E-value=1.3e+02 Score=34.23 Aligned_cols=37 Identities=22% Similarity=0.037 Sum_probs=27.9
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~ 121 (731)
+--+-+.|+|++||+|..+..|+ ++. .-.|+|+|.|.
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lS--l~y--------~lsV~aIegsq 186 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLS--LGY--------GLSVKAIEGSQ 186 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHh--hcc--------CceEEEeccch
Confidence 44567899999999998776664 232 35899999984
No 498
>PRK07041 short chain dehydrogenase; Provisional
Probab=20.41 E-value=6.4e+02 Score=25.07 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=34.5
Q ss_pred cCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 87 AAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
-|.|+...+++..|... .-.|++++.+..++..+...++. + .++.+...|..+
T Consensus 4 Gas~~iG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~ 56 (230)
T PRK07041 4 GGSSGIGLALARAFAAE-------GARVTIASRSRDRLAAAARALGG-G-APVRTAALDITD 56 (230)
T ss_pred cCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCC
Confidence 46677788888877652 24788999988877666554431 2 345556666554
No 499
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.34 E-value=7.1e+02 Score=26.54 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=12.8
Q ss_pred HHHHHhhccCCCEEEE
Q 004775 218 AMRGISLLKVGGRIVY 233 (731)
Q Consensus 218 L~rAl~lLKpGG~LVY 233 (731)
+..+++.|+++|++|.
T Consensus 256 ~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 256 FPDLLRLLRPGGRYVT 271 (350)
T ss_pred HHHHHHHhccCCEEEE
Confidence 4567889999999874
No 500
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=20.21 E-value=4.5e+02 Score=28.08 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCCCCEEEeeccCc--chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 75 DVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 75 d~~pg~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.++++++||=.++++ |.-+.++|..++ -.|++...+..+...+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g----------~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG----------LRVIAIDVGDEKLELA 206 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHH
Confidence 678899999777653 333444444432 3688888888887765
Done!