Query 004775
Match_columns 731
No_of_seqs 392 out of 2543
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fzv_A Putative methyltransfer 100.0 2.1E-52 7E-57 454.8 11.2 212 9-255 85-304 (359)
2 2frx_A Hypothetical protein YE 100.0 5E-48 1.7E-52 435.4 28.7 378 17-644 64-446 (479)
3 3m4x_A NOL1/NOP2/SUN family pr 100.0 7.9E-46 2.7E-50 414.6 27.0 358 18-619 62-419 (456)
4 2b9e_A NOL1/NOP2/SUN domain fa 100.0 6.5E-45 2.2E-49 389.0 21.0 181 56-263 80-262 (309)
5 1ixk_A Methyltransferase; open 100.0 3.6E-43 1.2E-47 375.5 20.4 246 17-381 70-315 (315)
6 3m6w_A RRNA methylase; rRNA me 100.0 2.9E-43 9.8E-48 394.5 18.7 204 17-264 54-257 (464)
7 2yxl_A PH0851 protein, 450AA l 100.0 2E-39 6.8E-44 362.5 20.6 205 17-263 212-416 (450)
8 3ajd_A Putative methyltransfer 100.0 3.8E-39 1.3E-43 337.1 19.4 179 56-264 61-239 (274)
9 1sqg_A SUN protein, FMU protei 100.0 1.4E-37 4.9E-42 345.3 19.5 200 17-260 199-398 (429)
10 4dmg_A Putative uncharacterize 99.7 6.9E-17 2.3E-21 177.8 12.3 182 17-263 173-356 (393)
11 3id6_C Fibrillarin-like rRNA/T 99.7 2.1E-16 7.2E-21 162.3 14.5 140 74-268 72-218 (232)
12 1wxx_A TT1595, hypothetical pr 99.6 3.3E-15 1.1E-19 163.2 14.2 164 56-264 191-356 (382)
13 3v97_A Ribosomal RNA large sub 99.6 9.3E-15 3.2E-19 171.8 13.2 182 16-263 498-681 (703)
14 3c0k_A UPF0064 protein YCCW; P 99.5 1.7E-14 5.9E-19 158.2 11.0 165 56-263 201-369 (396)
15 2as0_A Hypothetical protein PH 99.5 3.4E-14 1.1E-18 155.7 11.7 164 57-262 198-364 (396)
16 2b78_A Hypothetical protein SM 99.5 1.5E-13 5.3E-18 150.5 11.5 159 57-257 193-355 (385)
17 2igt_A SAM dependent methyltra 99.4 1.2E-13 4.2E-18 148.6 9.9 164 56-259 130-299 (332)
18 3lpm_A Putative methyltransfer 99.4 1.5E-12 5.1E-17 133.9 14.8 153 67-255 37-192 (259)
19 3e05_A Precorrin-6Y C5,15-meth 99.4 4.3E-12 1.5E-16 125.1 14.9 135 71-263 33-167 (204)
20 2frn_A Hypothetical protein PH 99.4 2.4E-12 8.3E-17 134.5 13.5 130 76-263 123-256 (278)
21 2dul_A N(2),N(2)-dimethylguano 99.4 1.9E-13 6.4E-18 149.8 4.6 122 78-255 47-183 (378)
22 3njr_A Precorrin-6Y methylase; 99.4 4.3E-12 1.5E-16 126.5 13.1 131 71-263 48-179 (204)
23 3k6r_A Putative transferase PH 99.3 5.2E-12 1.8E-16 133.0 14.0 130 76-263 123-256 (278)
24 1i1n_A Protein-L-isoaspartate 99.3 2.8E-12 9.7E-17 128.2 10.8 115 75-246 74-193 (226)
25 3evz_A Methyltransferase; NYSG 99.3 1.6E-11 5.5E-16 122.9 16.2 153 75-263 52-205 (230)
26 3tma_A Methyltransferase; thum 99.3 2.9E-12 1E-16 138.1 11.4 132 72-252 197-328 (354)
27 3axs_A Probable N(2),N(2)-dime 99.3 1E-12 3.5E-17 144.5 7.9 126 77-256 51-178 (392)
28 2b3t_A Protein methyltransfera 99.3 6.9E-12 2.4E-16 130.2 13.7 143 77-255 108-254 (276)
29 1yb2_A Hypothetical protein TA 99.3 5.3E-12 1.8E-16 131.1 12.1 144 59-264 91-235 (275)
30 3mti_A RRNA methylase; SAM-dep 99.3 1.8E-11 6E-16 118.5 14.0 135 75-254 19-156 (185)
31 4df3_A Fibrillarin-like rRNA/T 99.3 7.8E-12 2.7E-16 128.5 11.8 110 74-235 73-182 (233)
32 3eey_A Putative rRNA methylase 99.3 2.2E-11 7.4E-16 119.0 13.9 137 74-253 18-159 (197)
33 3hm2_A Precorrin-6Y C5,15-meth 99.3 1.6E-11 5.5E-16 117.2 11.7 133 72-264 19-153 (178)
34 3dou_A Ribosomal RNA large sub 99.2 1E-11 3.5E-16 123.0 8.1 136 76-263 23-161 (191)
35 2qm3_A Predicted methyltransfe 99.2 6.9E-11 2.4E-15 128.6 14.8 143 58-255 151-300 (373)
36 3u81_A Catechol O-methyltransf 99.2 2.1E-11 7.3E-16 122.1 9.8 152 61-263 41-194 (221)
37 2gpy_A O-methyltransferase; st 99.2 1.7E-11 5.7E-16 123.5 9.0 142 42-238 21-163 (233)
38 2pwy_A TRNA (adenine-N(1)-)-me 99.2 1.7E-10 6E-15 117.0 16.3 132 71-263 89-221 (258)
39 3mb5_A SAM-dependent methyltra 99.2 4.7E-11 1.6E-15 121.5 11.7 127 69-255 84-211 (255)
40 1o54_A SAM-dependent O-methylt 99.2 1E-10 3.5E-15 121.2 13.9 132 71-264 105-237 (277)
41 1nt2_A Fibrillarin-like PRE-rR 99.2 9.9E-11 3.4E-15 117.5 12.7 135 74-265 53-194 (210)
42 2f8l_A Hypothetical protein LM 99.2 8E-11 2.7E-15 126.4 12.6 149 75-254 127-276 (344)
43 4dzr_A Protein-(glutamine-N5) 99.2 1.9E-11 6.4E-16 119.7 6.9 149 77-255 29-183 (215)
44 3tfw_A Putative O-methyltransf 99.2 3.8E-11 1.3E-15 123.1 8.7 124 64-239 49-174 (248)
45 3p9n_A Possible methyltransfer 99.2 1.7E-10 5.8E-15 112.4 12.5 112 77-238 43-156 (189)
46 3a27_A TYW2, uncharacterized p 99.2 7.9E-11 2.7E-15 122.7 10.7 108 74-239 115-222 (272)
47 1nv8_A HEMK protein; class I a 99.2 8.8E-11 3E-15 123.4 10.8 137 77-253 122-263 (284)
48 3duw_A OMT, O-methyltransferas 99.1 7.9E-11 2.7E-15 117.4 9.6 127 63-238 43-170 (223)
49 3gdh_A Trimethylguanosine synt 99.1 8.8E-11 3E-15 118.5 9.1 94 66-192 66-160 (241)
50 2yx1_A Hypothetical protein MJ 99.1 1.9E-10 6.4E-15 123.6 12.0 101 77-239 194-295 (336)
51 1wy7_A Hypothetical protein PH 99.1 3.5E-10 1.2E-14 111.3 12.8 126 75-260 46-171 (207)
52 2ift_A Putative methylase HI07 99.1 1.5E-10 5E-15 114.9 9.9 110 78-239 53-167 (201)
53 3grz_A L11 mtase, ribosomal pr 99.1 4.6E-10 1.6E-14 110.4 13.2 125 76-263 58-182 (205)
54 3bt7_A TRNA (uracil-5-)-methyl 99.1 1.1E-10 3.7E-15 127.0 9.3 116 79-238 214-329 (369)
55 2ozv_A Hypothetical protein AT 99.1 2.9E-10 9.9E-15 117.5 11.9 157 66-253 24-184 (260)
56 3dh0_A SAM dependent methyltra 99.1 9.8E-10 3.4E-14 108.7 14.6 138 73-263 32-178 (219)
57 1xxl_A YCGJ protein; structura 99.1 5.8E-10 2E-14 112.8 12.9 123 62-238 5-127 (239)
58 3f4k_A Putative methyltransfer 99.1 1.7E-09 6E-14 109.5 16.0 113 74-240 42-155 (257)
59 1dus_A MJ0882; hypothetical pr 99.1 9.9E-10 3.4E-14 105.4 13.3 133 73-262 47-181 (194)
60 1l3i_A Precorrin-6Y methyltran 99.1 3.9E-10 1.3E-14 108.1 10.4 130 73-263 28-159 (192)
61 3dr5_A Putative O-methyltransf 99.1 1.9E-10 6.5E-15 116.4 8.5 111 76-238 54-166 (221)
62 3c3y_A Pfomt, O-methyltransfer 99.1 2.9E-10 9.9E-15 115.8 9.8 129 63-239 55-185 (237)
63 1yzh_A TRNA (guanine-N(7)-)-me 99.1 1.2E-09 3.9E-14 108.8 13.7 138 77-263 40-179 (214)
64 3fpf_A Mtnas, putative unchara 99.1 5.9E-10 2E-14 118.2 12.2 106 72-234 116-221 (298)
65 3vc1_A Geranyl diphosphate 2-C 99.1 1.8E-09 6.3E-14 113.7 16.0 114 73-240 111-226 (312)
66 3g89_A Ribosomal RNA small sub 99.1 4.5E-10 1.5E-14 115.7 11.0 128 75-256 77-204 (249)
67 1inl_A Spermidine synthase; be 99.1 1.6E-10 5.6E-15 122.0 7.8 138 78-262 90-233 (296)
68 3lbf_A Protein-L-isoaspartate 99.1 9.3E-10 3.2E-14 108.5 12.4 107 71-237 70-176 (210)
69 3tr6_A O-methyltransferase; ce 99.0 1.3E-10 4.4E-15 115.9 6.1 128 62-238 48-177 (225)
70 2fpo_A Methylase YHHF; structu 99.0 4E-10 1.4E-14 111.8 9.5 109 78-239 54-164 (202)
71 1xdz_A Methyltransferase GIDB; 99.0 4.6E-10 1.6E-14 113.9 10.1 127 75-255 67-193 (240)
72 2plw_A Ribosomal RNA methyltra 99.0 9.8E-10 3.4E-14 107.4 11.7 146 76-253 20-169 (201)
73 2fca_A TRNA (guanine-N(7)-)-me 99.0 9.5E-10 3.2E-14 110.1 11.7 118 77-236 37-154 (213)
74 3ntv_A MW1564 protein; rossman 99.0 3.5E-10 1.2E-14 114.5 8.6 121 63-236 56-177 (232)
75 1i9g_A Hypothetical protein RV 99.0 1.2E-09 4E-14 112.7 12.5 112 71-238 92-206 (280)
76 3kkz_A Uncharacterized protein 99.0 2.4E-09 8.4E-14 109.7 14.8 113 75-241 43-156 (267)
77 3kr9_A SAM-dependent methyltra 99.0 5.7E-09 1.9E-13 106.6 16.8 126 76-263 13-140 (225)
78 2b25_A Hypothetical protein; s 99.0 2.1E-09 7.2E-14 114.6 14.1 110 72-235 99-219 (336)
79 3r3h_A O-methyltransferase, SA 99.0 7.5E-11 2.6E-15 120.9 2.2 148 42-238 25-173 (242)
80 1g8a_A Fibrillarin-like PRE-rR 99.0 1.9E-09 6.6E-14 107.8 12.4 109 75-235 70-178 (227)
81 2yxd_A Probable cobalt-precorr 99.0 3.4E-09 1.2E-13 100.9 13.5 127 73-263 30-156 (183)
82 3c3p_A Methyltransferase; NP_9 99.0 4.7E-10 1.6E-14 111.1 7.4 118 66-238 44-163 (210)
83 4gek_A TRNA (CMO5U34)-methyltr 99.0 2.4E-09 8.1E-14 111.2 12.5 111 76-237 68-180 (261)
84 3dxy_A TRNA (guanine-N(7)-)-me 99.0 1.5E-09 5.3E-14 109.5 10.7 120 77-237 33-152 (218)
85 1dl5_A Protein-L-isoaspartate 99.0 2E-09 6.9E-14 114.2 12.1 108 71-235 68-175 (317)
86 2ipx_A RRNA 2'-O-methyltransfe 99.0 2.5E-09 8.6E-14 107.7 12.1 110 74-235 73-182 (233)
87 1nkv_A Hypothetical protein YJ 99.0 4.5E-09 1.5E-13 106.4 14.0 112 73-238 31-143 (256)
88 2vdv_E TRNA (guanine-N(7)-)-me 99.0 2.6E-09 8.9E-14 108.9 12.3 140 76-261 47-195 (246)
89 3jwh_A HEN1; methyltransferase 99.0 4.4E-09 1.5E-13 104.3 13.7 144 75-268 26-196 (217)
90 2esr_A Methyltransferase; stru 99.0 1.6E-09 5.4E-14 103.9 9.7 111 76-239 29-142 (177)
91 2bm8_A Cephalosporin hydroxyla 99.0 4.5E-10 1.5E-14 114.7 6.1 139 73-263 76-216 (236)
92 3hem_A Cyclopropane-fatty-acyl 99.0 1.2E-08 4.1E-13 106.7 16.9 121 72-239 66-187 (302)
93 3lec_A NADB-rossmann superfami 99.0 1.4E-08 4.8E-13 104.1 16.9 127 76-263 19-146 (230)
94 1sui_A Caffeoyl-COA O-methyltr 98.9 1E-09 3.5E-14 112.8 8.3 147 41-236 43-191 (247)
95 2nyu_A Putative ribosomal RNA 98.9 2.4E-09 8.3E-14 104.0 10.5 140 76-253 20-160 (196)
96 3tm4_A TRNA (guanine N2-)-meth 98.9 5E-09 1.7E-13 114.1 14.1 128 76-255 215-343 (373)
97 2h1r_A Dimethyladenosine trans 98.9 5.9E-10 2E-14 118.0 6.3 134 63-238 27-162 (299)
98 1o9g_A RRNA methyltransferase; 98.9 2.9E-09 1E-13 108.5 11.1 126 77-238 50-217 (250)
99 2pbf_A Protein-L-isoaspartate 98.9 2.3E-09 8E-14 107.0 10.2 112 75-235 77-193 (227)
100 1fbn_A MJ fibrillarin homologu 98.9 7.3E-09 2.5E-13 104.3 13.8 108 74-234 70-177 (230)
101 2fhp_A Methylase, putative; al 98.9 2.4E-09 8.1E-14 102.9 9.4 117 76-240 42-159 (187)
102 2yvl_A TRMI protein, hypotheti 98.9 9.1E-09 3.1E-13 103.6 14.1 109 71-238 84-193 (248)
103 1ej0_A FTSJ; methyltransferase 98.9 2.9E-09 1E-13 100.0 9.5 139 76-263 20-158 (180)
104 3ujc_A Phosphoethanolamine N-m 98.9 7.3E-09 2.5E-13 104.9 13.1 113 73-238 50-162 (266)
105 1vl5_A Unknown conserved prote 98.9 3.5E-09 1.2E-13 107.9 10.5 112 71-236 30-141 (260)
106 2okc_A Type I restriction enzy 98.9 3E-09 1E-13 118.4 10.6 171 56-253 149-328 (445)
107 4dcm_A Ribosomal RNA large sub 98.9 7.5E-09 2.6E-13 113.1 13.5 124 70-241 214-340 (375)
108 1uwv_A 23S rRNA (uracil-5-)-me 98.9 1E-08 3.5E-13 113.8 14.7 88 74-189 282-369 (433)
109 3gnl_A Uncharacterized protein 98.9 2.4E-08 8.1E-13 103.2 16.3 126 76-262 19-145 (244)
110 3dtn_A Putative methyltransfer 98.9 1.3E-08 4.3E-13 101.8 13.9 111 76-239 42-152 (234)
111 2p41_A Type II methyltransfera 98.9 9.1E-10 3.1E-14 117.1 5.7 106 76-234 80-190 (305)
112 3jwg_A HEN1, methyltransferase 98.9 1.2E-08 4.1E-13 101.1 13.2 144 75-268 26-196 (219)
113 2ih2_A Modification methylase 98.9 2E-09 6.8E-14 117.6 8.2 151 72-263 33-192 (421)
114 1ws6_A Methyltransferase; stru 98.9 4.6E-09 1.6E-13 99.2 9.4 115 77-242 40-154 (171)
115 1r18_A Protein-L-isoaspartate( 98.9 3.6E-09 1.2E-13 106.2 9.0 110 75-236 81-195 (227)
116 2nxc_A L11 mtase, ribosomal pr 98.9 9.6E-09 3.3E-13 105.7 12.4 124 76-263 118-241 (254)
117 3bus_A REBM, methyltransferase 98.9 2.8E-08 9.7E-13 101.6 15.9 113 73-238 56-169 (273)
118 2yxe_A Protein-L-isoaspartate 98.9 1.1E-08 3.6E-13 101.2 12.1 109 72-237 71-179 (215)
119 1kpg_A CFA synthase;, cyclopro 98.9 1.9E-08 6.6E-13 103.9 14.6 112 73-238 59-171 (287)
120 2kw5_A SLR1183 protein; struct 98.9 3.6E-08 1.2E-12 96.3 15.2 107 76-238 28-134 (202)
121 3dmg_A Probable ribosomal RNA 98.9 9.6E-09 3.3E-13 112.5 12.3 114 77-240 232-345 (381)
122 3dlc_A Putative S-adenosyl-L-m 98.8 1.8E-08 6E-13 98.7 12.6 111 74-238 40-151 (219)
123 2o57_A Putative sarcosine dime 98.8 4.9E-08 1.7E-12 101.3 16.6 110 75-237 79-189 (297)
124 2h00_A Methyltransferase 10 do 98.8 7.8E-08 2.7E-12 97.9 17.4 158 78-263 65-238 (254)
125 3sm3_A SAM-dependent methyltra 98.8 3.6E-08 1.2E-12 97.7 14.5 112 76-238 28-144 (235)
126 3ofk_A Nodulation protein S; N 98.8 1.6E-08 5.5E-13 99.8 11.7 138 72-263 45-188 (216)
127 3lcc_A Putative methyl chlorid 98.8 1.7E-08 5.7E-13 101.3 11.8 130 79-263 67-204 (235)
128 2hnk_A SAM-dependent O-methylt 98.8 4.9E-09 1.7E-13 106.1 7.9 130 69-238 51-184 (239)
129 3g5l_A Putative S-adenosylmeth 98.8 3.4E-08 1.2E-12 100.0 14.2 108 74-237 40-147 (253)
130 2xvm_A Tellurite resistance pr 98.8 2.1E-08 7.2E-13 97.0 12.0 109 73-234 27-135 (199)
131 3orh_A Guanidinoacetate N-meth 98.8 5.1E-09 1.7E-13 106.5 7.9 113 76-235 58-170 (236)
132 1vbf_A 231AA long hypothetical 98.8 8.9E-09 3E-13 102.9 9.5 105 72-238 64-168 (231)
133 1zx0_A Guanidinoacetate N-meth 98.8 4.1E-09 1.4E-13 106.3 7.0 115 76-237 58-172 (236)
134 1jg1_A PIMT;, protein-L-isoasp 98.8 9.9E-09 3.4E-13 103.6 9.8 107 71-236 84-190 (235)
135 3cbg_A O-methyltransferase; cy 98.8 7.7E-09 2.6E-13 104.7 8.6 117 72-239 66-186 (232)
136 2avd_A Catechol-O-methyltransf 98.8 5.1E-09 1.7E-13 104.5 7.0 118 71-237 62-181 (229)
137 3ou2_A SAM-dependent methyltra 98.8 7.4E-08 2.5E-12 94.5 15.1 109 73-238 41-149 (218)
138 1jsx_A Glucose-inhibited divis 98.8 1.9E-08 6.4E-13 98.7 10.7 103 78-237 65-167 (207)
139 1pjz_A Thiopurine S-methyltran 98.8 1.6E-08 5.6E-13 100.2 10.2 115 74-239 18-144 (203)
140 1xtp_A LMAJ004091AAA; SGPP, st 98.8 3.8E-08 1.3E-12 99.3 13.1 129 75-256 90-230 (254)
141 2ar0_A M.ecoki, type I restric 98.8 5.2E-09 1.8E-13 119.6 7.5 170 56-253 147-332 (541)
142 3ocj_A Putative exported prote 98.8 2.5E-08 8.5E-13 104.7 12.0 115 74-237 114-229 (305)
143 2jjq_A Uncharacterized RNA met 98.8 3.1E-08 1.1E-12 110.0 13.3 79 76-189 288-366 (425)
144 3e23_A Uncharacterized protein 98.8 5.7E-08 2E-12 95.7 13.8 124 73-255 38-172 (211)
145 3hnr_A Probable methyltransfer 98.8 4.4E-08 1.5E-12 96.8 13.1 108 75-239 42-149 (220)
146 3mq2_A 16S rRNA methyltransfer 98.8 4.1E-08 1.4E-12 97.4 12.7 115 73-235 22-140 (218)
147 2xyq_A Putative 2'-O-methyl tr 98.8 1.1E-08 3.7E-13 108.3 9.0 124 73-255 58-188 (290)
148 2ex4_A Adrenal gland protein A 98.8 3.9E-08 1.3E-12 99.2 12.7 130 76-256 77-217 (241)
149 4fsd_A Arsenic methyltransfera 98.8 2.7E-08 9.1E-13 108.4 12.2 119 74-237 79-205 (383)
150 3ckk_A TRNA (guanine-N(7)-)-me 98.8 1.5E-08 5.3E-13 103.3 9.7 120 76-237 44-170 (235)
151 3mgg_A Methyltransferase; NYSG 98.8 3.1E-08 1.1E-12 101.6 12.0 110 74-235 33-142 (276)
152 2fk8_A Methoxy mycolic acid sy 98.8 6E-08 2E-12 102.0 13.8 114 73-240 85-199 (318)
153 1zq9_A Probable dimethyladenos 98.7 9.2E-09 3.1E-13 108.0 7.1 126 71-238 21-149 (285)
154 4htf_A S-adenosylmethionine-de 98.7 6.8E-08 2.3E-12 99.8 13.5 107 78-237 68-175 (285)
155 2pjd_A Ribosomal RNA small sub 98.7 2.5E-08 8.5E-13 107.0 10.6 118 73-240 191-308 (343)
156 1ne2_A Hypothetical protein TA 98.7 3.6E-08 1.2E-12 96.5 10.8 121 75-262 48-168 (200)
157 1ri5_A MRNA capping enzyme; me 98.7 5.5E-08 1.9E-12 100.3 12.7 115 76-238 62-177 (298)
158 3q87_B N6 adenine specific DNA 98.7 1.1E-08 3.8E-13 98.6 6.6 125 77-263 22-146 (170)
159 3cgg_A SAM-dependent methyltra 98.7 1.5E-07 5.2E-12 90.1 14.5 129 76-263 44-172 (195)
160 1ve3_A Hypothetical protein PH 98.7 8.1E-08 2.8E-12 95.0 12.9 108 77-237 37-144 (227)
161 3gu3_A Methyltransferase; alph 98.7 1.3E-08 4.5E-13 105.7 7.4 112 73-237 17-128 (284)
162 3lkd_A Type I restriction-modi 98.7 8.8E-08 3E-12 109.5 14.9 180 56-263 195-388 (542)
163 2p35_A Trans-aconitate 2-methy 98.7 4.5E-08 1.6E-12 99.0 11.1 106 74-237 29-134 (259)
164 3l8d_A Methyltransferase; stru 98.7 9.9E-08 3.4E-12 95.5 13.4 106 76-238 51-156 (242)
165 3m70_A Tellurite resistance pr 98.7 4.6E-08 1.6E-12 101.1 11.3 107 74-234 116-222 (286)
166 2pxx_A Uncharacterized protein 98.7 2.8E-08 9.5E-13 97.2 9.0 122 77-238 41-162 (215)
167 3h2b_A SAM-dependent methyltra 98.7 9.9E-08 3.4E-12 93.2 12.7 126 79-263 42-179 (203)
168 3g5t_A Trans-aconitate 3-methy 98.7 6.2E-08 2.1E-12 101.1 11.6 115 77-237 35-151 (299)
169 3g2m_A PCZA361.24; SAM-depende 98.7 3.6E-08 1.2E-12 102.9 9.6 109 79-239 83-194 (299)
170 2p8j_A S-adenosylmethionine-de 98.7 4.3E-08 1.5E-12 95.9 9.2 112 75-238 20-131 (209)
171 3ccf_A Cyclopropane-fatty-acyl 98.7 1.1E-07 3.8E-12 98.1 12.6 107 72-238 51-157 (279)
172 1wzn_A SAM-dependent methyltra 98.7 1.5E-07 5.1E-12 95.1 13.0 107 76-235 39-145 (252)
173 3p2e_A 16S rRNA methylase; met 98.7 1.7E-08 5.9E-13 102.3 6.0 114 76-235 22-139 (225)
174 2yqz_A Hypothetical protein TT 98.7 5.6E-08 1.9E-12 98.3 9.6 106 74-234 35-140 (263)
175 3g07_A 7SK snRNA methylphospha 98.6 8.6E-08 2.9E-12 100.4 11.0 50 77-135 45-94 (292)
176 3adn_A Spermidine synthase; am 98.6 5E-08 1.7E-12 103.2 8.8 114 77-237 82-200 (294)
177 1m6y_A S-adenosyl-methyltransf 98.6 2.8E-08 9.7E-13 105.6 6.9 90 73-188 21-110 (301)
178 3i9f_A Putative type 11 methyl 98.6 1E-07 3.5E-12 90.5 9.6 125 74-264 13-146 (170)
179 2vdw_A Vaccinia virus capping 98.6 8.7E-08 3E-12 101.5 10.1 119 77-237 47-171 (302)
180 3uwp_A Histone-lysine N-methyl 98.6 1.2E-07 3.9E-12 104.8 11.3 111 73-234 168-287 (438)
181 2fyt_A Protein arginine N-meth 98.6 9.2E-08 3.1E-12 102.8 10.1 122 74-246 60-184 (340)
182 3khk_A Type I restriction-modi 98.6 1.4E-07 4.7E-12 108.0 11.9 180 55-255 222-418 (544)
183 2gb4_A Thiopurine S-methyltran 98.6 1.9E-07 6.6E-12 96.3 11.7 136 75-264 65-225 (252)
184 2y1w_A Histone-arginine methyl 98.6 1.3E-07 4.6E-12 101.7 10.8 126 74-252 46-174 (348)
185 1mjf_A Spermidine synthase; sp 98.6 5.2E-08 1.8E-12 102.0 7.3 112 77-238 74-196 (281)
186 2p7i_A Hypothetical protein; p 98.6 1.8E-07 6.2E-12 93.1 10.9 102 77-237 41-143 (250)
187 3d2l_A SAM-dependent methyltra 98.6 2.2E-07 7.4E-12 92.9 11.2 109 76-237 31-139 (243)
188 3q7e_A Protein arginine N-meth 98.6 9E-08 3.1E-12 103.2 9.0 119 76-245 64-185 (349)
189 2i7c_A Spermidine synthase; tr 98.6 1.1E-07 3.9E-12 99.5 9.2 114 77-237 77-194 (283)
190 2oxt_A Nucleoside-2'-O-methylt 98.6 4.4E-08 1.5E-12 102.1 5.8 106 76-237 72-187 (265)
191 3m33_A Uncharacterized protein 98.6 9.7E-08 3.3E-12 95.7 8.0 112 76-256 46-159 (226)
192 3e8s_A Putative SAM dependent 98.6 1.4E-07 4.8E-12 92.7 8.9 106 75-237 49-154 (227)
193 1u2z_A Histone-lysine N-methyl 98.6 2.7E-07 9.4E-12 102.6 12.3 113 73-234 237-358 (433)
194 3thr_A Glycine N-methyltransfe 98.5 1.1E-07 3.8E-12 98.4 8.5 122 74-238 53-178 (293)
195 3dli_A Methyltransferase; PSI- 98.5 3.7E-07 1.3E-11 91.9 12.1 129 75-263 38-181 (240)
196 3iv6_A Putative Zn-dependent a 98.5 2.5E-07 8.6E-12 96.4 11.1 110 73-236 40-149 (261)
197 1iy9_A Spermidine synthase; ro 98.5 9.3E-08 3.2E-12 99.9 7.9 113 78-237 75-191 (275)
198 3bkx_A SAM-dependent methyltra 98.5 3.1E-07 1.1E-11 93.9 11.7 119 73-239 38-163 (275)
199 3pfg_A N-methyltransferase; N, 98.5 4.9E-07 1.7E-11 92.1 13.0 103 77-235 49-151 (263)
200 3bkw_A MLL3908 protein, S-aden 98.5 1.5E-07 5.1E-12 94.1 8.8 108 73-236 38-145 (243)
201 2o07_A Spermidine synthase; st 98.5 1.7E-07 5.9E-12 99.4 9.8 114 77-237 94-211 (304)
202 3bxo_A N,N-dimethyltransferase 98.5 3.6E-07 1.2E-11 91.0 11.3 106 77-238 39-144 (239)
203 1y8c_A S-adenosylmethionine-de 98.5 3E-07 1E-11 91.7 10.6 107 78-236 37-143 (246)
204 2wa2_A Non-structural protein 98.5 6.6E-08 2.2E-12 101.4 5.9 106 76-237 80-195 (276)
205 2a14_A Indolethylamine N-methy 98.5 2E-07 6.8E-12 95.9 9.2 142 75-263 52-235 (263)
206 3r0q_C Probable protein argini 98.5 1.7E-07 5.7E-12 102.2 8.8 121 74-246 59-182 (376)
207 2pt6_A Spermidine synthase; tr 98.5 1.1E-07 3.7E-12 101.7 7.1 114 77-237 115-232 (321)
208 1g6q_1 HnRNP arginine N-methyl 98.5 2.1E-07 7E-12 99.5 9.1 127 76-253 36-165 (328)
209 1qzz_A RDMB, aclacinomycin-10- 98.5 2.1E-06 7.2E-11 92.2 16.8 110 74-236 178-288 (374)
210 3ggd_A SAM-dependent methyltra 98.5 3.9E-07 1.3E-11 91.8 10.3 127 74-253 52-178 (245)
211 3bzb_A Uncharacterized protein 98.5 8.9E-07 3E-11 92.3 13.3 131 76-255 77-227 (281)
212 3bwc_A Spermidine synthase; SA 98.5 2.1E-07 7.2E-12 98.5 8.4 133 77-255 94-231 (304)
213 2i62_A Nicotinamide N-methyltr 98.5 3.1E-07 1.1E-11 93.0 9.2 141 76-263 54-236 (265)
214 1xj5_A Spermidine synthase 1; 98.5 1.9E-07 6.5E-12 100.6 7.9 117 76-238 118-238 (334)
215 2qfm_A Spermine synthase; sper 98.5 3.6E-07 1.2E-11 99.4 9.9 144 78-260 188-339 (364)
216 3bgv_A MRNA CAP guanine-N7 met 98.4 8.5E-07 2.9E-11 93.2 12.1 119 77-238 33-158 (313)
217 1uir_A Polyamine aminopropyltr 98.4 3.3E-07 1.1E-11 97.5 8.9 117 77-237 76-197 (314)
218 3b3j_A Histone-arginine methyl 98.4 3.4E-07 1.1E-11 103.2 9.3 122 75-249 155-279 (480)
219 2aot_A HMT, histamine N-methyl 98.4 3.4E-07 1.2E-11 95.4 8.7 120 76-237 50-174 (292)
220 2r3s_A Uncharacterized protein 98.4 2.8E-06 9.7E-11 89.5 15.5 111 77-239 164-275 (335)
221 4hg2_A Methyltransferase type 98.4 2.2E-07 7.6E-12 96.3 6.8 103 78-241 39-141 (257)
222 3ege_A Putative methyltransfer 98.4 2.3E-07 8E-12 95.0 6.8 103 74-237 30-132 (261)
223 3fzg_A 16S rRNA methylase; met 98.4 2.7E-07 9.1E-12 92.2 6.9 107 77-238 48-156 (200)
224 3gjy_A Spermidine synthase; AP 98.4 4E-07 1.4E-11 97.4 8.8 113 80-238 91-203 (317)
225 2b2c_A Spermidine synthase; be 98.4 3.7E-07 1.3E-11 97.5 8.0 115 77-238 107-225 (314)
226 3i53_A O-methyltransferase; CO 98.4 8.8E-06 3E-10 86.2 18.4 112 75-239 166-278 (332)
227 3ll7_A Putative methyltransfer 98.4 3.7E-07 1.3E-11 100.9 7.1 83 77-189 92-176 (410)
228 1tw3_A COMT, carminomycin 4-O- 98.4 6.7E-06 2.3E-10 87.9 16.5 112 73-237 178-290 (360)
229 2gs9_A Hypothetical protein TT 98.3 8.4E-07 2.9E-11 87.1 8.2 100 78-238 36-135 (211)
230 2g72_A Phenylethanolamine N-me 98.3 1.6E-06 5.5E-11 89.9 10.8 141 77-263 70-253 (289)
231 3dp7_A SAM-dependent methyltra 98.3 9.8E-06 3.4E-10 87.4 17.1 114 77-240 178-292 (363)
232 3ufb_A Type I restriction-modi 98.3 2.9E-06 9.8E-11 96.8 13.3 175 56-253 195-382 (530)
233 2avn_A Ubiquinone/menaquinone 98.3 9.2E-07 3.2E-11 90.3 8.0 102 78-238 54-155 (260)
234 3s1s_A Restriction endonucleas 98.3 7.8E-07 2.7E-11 104.8 8.2 192 46-263 282-496 (878)
235 2qy6_A UPF0209 protein YFCK; s 98.3 6.2E-06 2.1E-10 85.6 13.8 139 76-262 58-231 (257)
236 1x19_A CRTF-related protein; m 98.3 7E-06 2.4E-10 88.0 14.8 112 74-238 186-298 (359)
237 3cc8_A Putative methyltransfer 98.3 4.3E-06 1.5E-10 82.2 12.0 102 77-237 31-132 (230)
238 1p91_A Ribosomal RNA large sub 98.3 9.5E-07 3.2E-11 90.3 7.4 98 77-238 84-181 (269)
239 3ldu_A Putative methylase; str 98.3 6E-06 2E-10 90.4 14.0 91 73-186 190-311 (385)
240 3gwz_A MMCR; methyltransferase 98.3 2.6E-05 8.8E-10 84.3 18.5 114 74-240 198-312 (369)
241 3k0b_A Predicted N6-adenine-sp 98.3 5.6E-06 1.9E-10 91.0 13.3 92 72-186 195-317 (393)
242 3ldg_A Putative uncharacterize 98.3 7.3E-06 2.5E-10 89.9 14.1 91 73-186 189-310 (384)
243 3htx_A HEN1; HEN1, small RNA m 98.2 3.5E-06 1.2E-10 99.6 12.0 113 75-237 718-836 (950)
244 2cmg_A Spermidine synthase; tr 98.2 1.4E-06 4.7E-11 90.6 7.7 98 78-237 72-173 (262)
245 4hc4_A Protein arginine N-meth 98.2 2.2E-06 7.6E-11 93.7 9.5 118 77-246 82-202 (376)
246 2ip2_A Probable phenazine-spec 98.2 8.5E-06 2.9E-10 86.2 13.6 111 75-239 165-276 (334)
247 2px2_A Genome polyprotein [con 98.2 2.8E-07 9.4E-12 95.4 1.5 38 76-118 71-108 (269)
248 3gru_A Dimethyladenosine trans 98.2 3.3E-06 1.1E-10 89.4 9.4 82 71-186 43-124 (295)
249 3evf_A RNA-directed RNA polyme 98.2 8.1E-06 2.8E-10 85.4 11.5 112 76-235 72-184 (277)
250 2zfu_A Nucleomethylin, cerebra 98.1 3.3E-06 1.1E-10 83.2 7.8 116 72-263 61-176 (215)
251 1yub_A Ermam, rRNA methyltrans 98.1 1.2E-07 4E-12 96.8 -2.8 88 69-190 20-107 (245)
252 3hp7_A Hemolysin, putative; st 98.1 3.7E-06 1.3E-10 88.9 8.5 99 78-234 85-184 (291)
253 1vlm_A SAM-dependent methyltra 98.1 5.8E-06 2E-10 82.1 9.2 96 78-238 47-142 (219)
254 3mcz_A O-methyltransferase; ad 98.1 1.7E-05 5.9E-10 84.4 13.1 117 74-240 174-292 (352)
255 3eld_A Methyltransferase; flav 98.1 1.1E-05 3.8E-10 85.1 11.0 110 77-234 80-190 (300)
256 2r6z_A UPF0341 protein in RSP 98.1 9.7E-07 3.3E-11 91.6 3.0 85 72-186 77-171 (258)
257 3sso_A Methyltransferase; macr 98.1 4.1E-06 1.4E-10 92.3 7.7 104 78-236 216-325 (419)
258 1qam_A ERMC' methyltransferase 98.1 8.7E-06 3E-10 83.3 9.3 66 72-150 24-89 (244)
259 4auk_A Ribosomal RNA large sub 98.1 5.2E-06 1.8E-10 90.4 7.9 74 76-188 209-282 (375)
260 3v97_A Ribosomal RNA large sub 98.1 2.6E-05 9E-10 91.7 14.4 128 73-235 185-347 (703)
261 2qe6_A Uncharacterized protein 98.0 5E-05 1.7E-09 79.0 14.6 120 78-238 77-199 (274)
262 2oyr_A UPF0341 protein YHIQ; a 98.0 4E-06 1.4E-10 87.2 6.2 125 71-257 79-214 (258)
263 3gcz_A Polyprotein; flavivirus 98.0 1.6E-06 5.4E-11 90.9 2.8 111 76-234 88-200 (282)
264 4e2x_A TCAB9; kijanose, tetron 98.0 7.3E-06 2.5E-10 89.6 7.8 106 73-236 102-209 (416)
265 3opn_A Putative hemolysin; str 98.0 2.3E-06 7.9E-11 87.2 3.0 100 78-235 37-137 (232)
266 3tqs_A Ribosomal RNA small sub 97.9 1.2E-05 4.2E-10 83.2 7.2 67 71-150 22-88 (255)
267 3lst_A CALO1 methyltransferase 97.9 6E-05 2.1E-09 80.6 12.8 110 74-239 180-290 (348)
268 1af7_A Chemotaxis receptor met 97.9 3.5E-05 1.2E-09 80.7 10.6 112 78-234 105-251 (274)
269 3cvo_A Methyltransferase-like 97.9 8E-05 2.7E-09 74.8 12.0 131 77-252 29-169 (202)
270 1wg8_A Predicted S-adenosylmet 97.8 1.7E-05 5.8E-10 83.4 5.6 85 73-188 17-101 (285)
271 3fut_A Dimethyladenosine trans 97.7 3.3E-05 1.1E-09 80.8 6.9 82 70-186 39-120 (271)
272 4a6d_A Hydroxyindole O-methylt 97.7 0.00016 5.5E-09 77.8 11.8 114 74-240 175-288 (353)
273 3tka_A Ribosomal RNA small sub 97.6 3.3E-05 1.1E-09 83.0 5.4 89 73-188 52-140 (347)
274 3frh_A 16S rRNA methylase; met 97.6 0.00026 9.1E-09 73.0 11.3 100 77-232 104-203 (253)
275 3lcv_B Sisomicin-gentamicin re 97.6 9.7E-05 3.3E-09 77.1 7.3 109 77-238 131-240 (281)
276 3r24_A NSP16, 2'-O-methyl tran 97.5 0.00011 3.7E-09 77.4 7.3 105 74-234 105-216 (344)
277 3giw_A Protein of unknown func 97.5 0.00012 4.1E-09 76.9 7.4 118 79-238 79-203 (277)
278 3ftd_A Dimethyladenosine trans 97.5 0.00013 4.6E-09 75.0 7.1 65 72-150 25-89 (249)
279 3uzu_A Ribosomal RNA small sub 97.5 0.00018 6.1E-09 75.5 8.0 69 71-150 35-103 (279)
280 3reo_A (ISO)eugenol O-methyltr 97.5 0.0003 1E-08 76.0 9.9 104 76-239 201-304 (368)
281 1fp1_D Isoliquiritigenin 2'-O- 97.4 0.00026 9E-09 76.3 8.6 103 76-238 207-309 (372)
282 1fp2_A Isoflavone O-methyltran 97.3 0.0004 1.4E-08 74.2 8.6 105 75-239 185-292 (352)
283 3p9c_A Caffeic acid O-methyltr 97.3 0.00079 2.7E-08 72.7 10.9 104 76-239 199-302 (364)
284 3p8z_A Mtase, non-structural p 97.3 0.00018 6.3E-09 73.6 5.2 38 75-121 75-112 (267)
285 2ld4_A Anamorsin; methyltransf 97.3 0.00033 1.1E-08 66.8 6.3 116 73-256 7-128 (176)
286 3o4f_A Spermidine synthase; am 97.3 0.00082 2.8E-08 71.1 9.9 117 70-234 76-197 (294)
287 4azs_A Methyltransferase WBDD; 97.1 0.00057 1.9E-08 78.3 7.3 75 78-182 66-140 (569)
288 1zg3_A Isoflavanone 4'-O-methy 97.0 0.0014 4.6E-08 70.2 9.0 103 76-238 191-296 (358)
289 3c6k_A Spermine synthase; sper 97.0 0.0016 5.4E-08 71.2 9.5 143 78-260 205-356 (381)
290 1qyr_A KSGA, high level kasuga 97.0 0.00028 9.6E-09 72.8 2.9 66 72-150 15-80 (252)
291 2wk1_A NOVP; transferase, O-me 97.0 0.0024 8.3E-08 67.1 10.0 136 79-263 107-271 (282)
292 3lkz_A Non-structural protein 96.9 0.0017 5.7E-08 68.5 8.0 38 76-122 92-129 (321)
293 3g7u_A Cytosine-specific methy 96.8 0.0039 1.3E-07 68.0 10.6 87 80-194 3-89 (376)
294 4gqb_A Protein arginine N-meth 96.8 0.003 1E-07 73.3 9.5 123 80-250 359-484 (637)
295 3ua3_A Protein arginine N-meth 96.7 0.0019 6.6E-08 75.4 7.5 136 79-251 410-552 (745)
296 2c7p_A Modification methylase 96.7 0.0032 1.1E-07 67.4 8.6 79 79-194 11-89 (327)
297 1g55_A DNA cytosine methyltran 96.6 0.0018 6.1E-08 69.7 5.8 83 80-193 3-85 (343)
298 2oo3_A Protein involved in cat 96.6 0.00083 2.8E-08 70.6 2.9 121 79-253 92-212 (283)
299 3vyw_A MNMC2; tRNA wobble urid 96.4 0.015 5E-07 61.9 10.9 130 78-258 96-242 (308)
300 2zig_A TTHA0409, putative modi 95.6 0.022 7.6E-07 59.6 7.8 48 77-135 234-281 (297)
301 2qrv_A DNA (cytosine-5)-methyl 95.2 0.027 9.3E-07 59.4 7.1 85 77-192 14-99 (295)
302 4h0n_A DNMT2; SAH binding, tra 95.0 0.024 8.2E-07 60.8 5.9 82 80-192 4-85 (333)
303 3ubt_Y Modification methylase 94.7 0.047 1.6E-06 57.5 7.3 77 80-192 1-77 (331)
304 3two_A Mannitol dehydrogenase; 94.7 0.075 2.6E-06 56.4 9.0 92 74-234 172-264 (348)
305 3b5i_A S-adenosyl-L-methionine 94.7 0.098 3.4E-06 57.0 9.9 138 79-238 53-228 (374)
306 2efj_A 3,7-dimethylxanthine me 94.7 0.21 7.2E-06 54.6 12.6 42 79-120 53-102 (384)
307 2py6_A Methyltransferase FKBM; 94.6 0.081 2.8E-06 58.1 9.1 69 72-147 220-292 (409)
308 1f8f_A Benzyl alcohol dehydrog 94.5 0.077 2.6E-06 56.8 8.5 51 74-137 186-237 (371)
309 4ej6_A Putative zinc-binding d 94.5 0.073 2.5E-06 57.2 8.3 53 73-138 177-230 (370)
310 3s2e_A Zinc-containing alcohol 94.4 0.086 2.9E-06 55.6 8.4 51 74-138 162-213 (340)
311 1g60_A Adenine-specific methyl 94.4 0.044 1.5E-06 56.2 5.9 49 76-135 210-258 (260)
312 1pl8_A Human sorbitol dehydrog 94.4 0.092 3.1E-06 55.9 8.6 53 73-138 166-219 (356)
313 3qv2_A 5-cytosine DNA methyltr 94.3 0.033 1.1E-06 59.6 5.0 79 79-189 10-89 (327)
314 1i4w_A Mitochondrial replicati 94.2 0.067 2.3E-06 57.9 7.0 60 78-149 58-117 (353)
315 3pvc_A TRNA 5-methylaminomethy 94.0 0.16 5.6E-06 59.0 10.4 141 77-260 57-229 (689)
316 2dph_A Formaldehyde dismutase; 93.9 0.17 6E-06 54.7 9.9 50 74-136 181-231 (398)
317 3jv7_A ADH-A; dehydrogenase, n 93.8 0.11 3.7E-06 55.0 7.8 51 75-138 168-219 (345)
318 3fpc_A NADP-dependent alcohol 93.8 0.077 2.6E-06 56.4 6.5 103 74-234 162-265 (352)
319 3uko_A Alcohol dehydrogenase c 93.6 0.086 2.9E-06 56.6 6.6 52 74-138 189-241 (378)
320 4a2c_A Galactitol-1-phosphate 93.4 0.27 9.3E-06 51.7 9.9 52 74-138 156-208 (346)
321 1e3j_A NADP(H)-dependent ketos 93.3 0.21 7.3E-06 52.9 9.0 50 74-137 164-214 (352)
322 1kol_A Formaldehyde dehydrogen 93.3 0.1 3.5E-06 56.4 6.6 50 74-136 181-231 (398)
323 3uog_A Alcohol dehydrogenase; 93.2 0.15 5E-06 54.6 7.7 51 74-138 185-236 (363)
324 1p0f_A NADP-dependent alcohol 93.1 0.17 5.8E-06 54.1 8.0 52 74-138 187-239 (373)
325 2k4m_A TR8_protein, UPF0146 pr 93.0 0.18 6.2E-06 48.2 7.0 38 77-125 34-73 (153)
326 1cdo_A Alcohol dehydrogenase; 93.0 0.16 5.5E-06 54.3 7.5 51 74-137 188-239 (374)
327 2jhf_A Alcohol dehydrogenase E 93.0 0.17 6E-06 54.1 7.7 51 74-137 187-238 (374)
328 2fzw_A Alcohol dehydrogenase c 92.9 0.19 6.4E-06 53.7 7.8 52 74-138 186-238 (373)
329 1e3i_A Alcohol dehydrogenase, 92.8 0.18 6.3E-06 53.9 7.5 51 74-137 191-242 (376)
330 1uuf_A YAHK, zinc-type alcohol 92.7 0.21 7.2E-06 53.6 7.9 49 75-137 191-240 (369)
331 4dvj_A Putative zinc-dependent 91.8 0.22 7.6E-06 53.3 6.7 97 78-234 171-269 (363)
332 3m6i_A L-arabinitol 4-dehydrog 91.6 0.17 5.8E-06 53.9 5.6 48 73-129 174-222 (363)
333 3me5_A Cytosine-specific methy 91.2 0.19 6.6E-06 56.5 5.7 99 78-192 87-185 (482)
334 4eez_A Alcohol dehydrogenase 1 91.2 0.44 1.5E-05 50.1 8.1 52 74-138 159-211 (348)
335 3ps9_A TRNA 5-methylaminomethy 91.0 1.2 4.2E-05 51.5 12.4 59 175-259 178-236 (676)
336 1piw_A Hypothetical zinc-type 91.0 0.19 6.5E-06 53.5 5.2 51 74-138 175-226 (360)
337 1vj0_A Alcohol dehydrogenase, 90.9 0.41 1.4E-05 51.4 7.8 52 74-138 190-243 (380)
338 3goh_A Alcohol dehydrogenase, 90.9 0.25 8.5E-06 51.5 5.8 50 74-138 138-188 (315)
339 2h6e_A ADH-4, D-arabinose 1-de 90.3 0.31 1E-05 51.5 5.9 51 75-138 168-219 (344)
340 3ip1_A Alcohol dehydrogenase, 90.1 0.85 2.9E-05 49.4 9.4 50 75-137 210-260 (404)
341 1m6e_X S-adenosyl-L-methionnin 87.7 0.44 1.5E-05 51.6 5.0 138 79-238 52-212 (359)
342 1rjw_A ADH-HT, alcohol dehydro 87.5 1.2 4E-05 47.0 8.0 49 75-137 161-210 (339)
343 3fbg_A Putative arginate lyase 86.9 0.59 2E-05 49.4 5.3 46 78-137 150-197 (346)
344 3swr_A DNA (cytosine-5)-methyl 86.8 1.3 4.3E-05 54.1 8.7 92 79-193 540-635 (1002)
345 3gms_A Putative NADPH:quinone 86.8 1.1 3.8E-05 47.1 7.4 51 73-137 139-191 (340)
346 2eih_A Alcohol dehydrogenase; 86.6 1.4 4.9E-05 46.3 8.1 50 74-137 162-213 (343)
347 4dup_A Quinone oxidoreductase; 86.6 1.7 5.8E-05 46.1 8.7 50 74-137 163-214 (353)
348 1eg2_A Modification methylase 86.3 0.73 2.5E-05 48.9 5.6 49 76-135 240-291 (319)
349 3qwb_A Probable quinone oxidor 86.1 1.1 3.7E-05 47.0 6.8 50 74-137 144-195 (334)
350 1pqw_A Polyketide synthase; ro 86.1 1.2 4.1E-05 42.7 6.7 44 74-127 34-79 (198)
351 2d8a_A PH0655, probable L-thre 86.1 1 3.5E-05 47.5 6.6 50 74-137 164-214 (348)
352 3jyn_A Quinone oxidoreductase; 86.0 1.2 4.1E-05 46.5 7.1 50 74-137 136-187 (325)
353 4ft4_B DNA (cytosine-5)-methyl 85.9 1.5 5.2E-05 51.7 8.7 48 79-130 212-259 (784)
354 4eye_A Probable oxidoreductase 85.7 1 3.5E-05 47.5 6.4 50 74-137 155-206 (342)
355 2b5w_A Glucose dehydrogenase; 85.5 0.78 2.7E-05 48.7 5.4 51 74-137 162-224 (357)
356 2zig_A TTHA0409, putative modi 85.4 0.42 1.4E-05 49.8 3.1 60 175-236 39-98 (297)
357 2cf5_A Atccad5, CAD, cinnamyl 85.2 0.85 2.9E-05 48.4 5.5 51 75-138 176-228 (357)
358 4fs3_A Enoyl-[acyl-carrier-pro 84.5 3 0.0001 42.0 9.0 138 78-234 5-145 (256)
359 1boo_A Protein (N-4 cytosine-s 84.2 0.68 2.3E-05 49.0 4.1 50 76-136 250-299 (323)
360 3oig_A Enoyl-[acyl-carrier-pro 83.4 4.8 0.00016 40.3 9.9 135 79-235 7-147 (266)
361 4b7c_A Probable oxidoreductase 83.3 2 6.9E-05 44.9 7.3 51 74-137 145-197 (336)
362 3k31_A Enoyl-(acyl-carrier-pro 83.0 4.6 0.00016 41.5 9.8 146 63-235 17-168 (296)
363 2j3h_A NADP-dependent oxidored 82.9 1.5 5.3E-05 45.9 6.2 51 74-137 151-203 (345)
364 1v3u_A Leukotriene B4 12- hydr 82.9 2.7 9.1E-05 43.9 8.0 46 74-127 141-186 (333)
365 1jvb_A NAD(H)-dependent alcoho 82.9 1.8 6.1E-05 45.6 6.7 46 74-128 166-213 (347)
366 2c0c_A Zinc binding alcohol de 82.8 2.3 7.8E-05 45.2 7.6 50 74-137 159-210 (362)
367 1xa0_A Putative NADPH dependen 82.7 1.6 5.3E-05 45.6 6.1 51 74-138 144-197 (328)
368 2j8z_A Quinone oxidoreductase; 82.2 3.5 0.00012 43.6 8.7 46 74-127 158-203 (354)
369 1boo_A Protein (N-4 cytosine-s 81.3 1.4 4.6E-05 46.7 5.1 55 175-237 32-86 (323)
370 3av4_A DNA (cytosine-5)-methyl 81.2 2.5 8.7E-05 52.9 8.1 96 78-192 850-945 (1330)
371 3krt_A Crotonyl COA reductase; 81.2 2 6.7E-05 47.3 6.5 51 74-138 224-276 (456)
372 1yqd_A Sinapyl alcohol dehydro 81.1 2.2 7.5E-05 45.4 6.7 50 75-137 183-234 (366)
373 2dq4_A L-threonine 3-dehydroge 81.0 0.98 3.4E-05 47.6 3.9 46 73-128 160-206 (343)
374 2hcy_A Alcohol dehydrogenase 1 80.3 1.6 5.4E-05 46.0 5.2 49 75-137 166-216 (347)
375 4dkj_A Cytosine-specific methy 79.9 1.7 5.9E-05 47.7 5.4 45 80-132 11-59 (403)
376 1qor_A Quinone oxidoreductase; 79.4 2.8 9.6E-05 43.6 6.7 47 73-129 135-183 (327)
377 1wly_A CAAR, 2-haloacrylate re 79.0 4.3 0.00015 42.3 8.0 46 74-129 141-188 (333)
378 2p38_A Protein involved in rib 78.9 7.2 0.00025 37.6 8.9 135 502-674 17-157 (166)
379 3tqh_A Quinone oxidoreductase; 78.4 7.2 0.00025 40.4 9.5 50 74-138 148-199 (321)
380 1wma_A Carbonyl reductase [NAD 78.2 7 0.00024 38.6 9.0 134 79-236 4-139 (276)
381 3nx4_A Putative oxidoreductase 77.6 4 0.00014 42.3 7.2 50 75-138 142-194 (324)
382 1tt7_A YHFP; alcohol dehydroge 77.4 2.1 7.1E-05 44.6 5.0 51 74-138 145-198 (330)
383 1xu9_A Corticosteroid 11-beta- 76.9 16 0.00053 37.0 11.3 62 79-148 28-89 (286)
384 1sqw_A Saccharomyces cerevisia 76.7 1.6 5.6E-05 43.0 3.6 122 502-646 11-137 (188)
385 1g60_A Adenine-specific methyl 76.2 2 6.7E-05 43.8 4.2 56 175-238 22-77 (260)
386 1iz0_A Quinone oxidoreductase; 75.6 1.7 6E-05 44.7 3.8 48 76-137 123-172 (302)
387 4a0s_A Octenoyl-COA reductase/ 75.5 9.1 0.00031 41.7 9.7 51 74-138 216-268 (447)
388 2cdc_A Glucose dehydrogenase g 75.3 5.7 0.0002 42.0 7.8 51 73-137 166-229 (366)
389 1yb5_A Quinone oxidoreductase; 73.6 5.3 0.00018 42.2 7.0 50 74-137 166-217 (351)
390 3tos_A CALS11; methyltransfera 73.2 6.2 0.00021 40.7 7.1 142 78-263 70-246 (257)
391 3gaz_A Alcohol dehydrogenase s 72.5 3.7 0.00013 43.2 5.4 49 74-137 146-196 (343)
392 1ja9_A 4HNR, 1,3,6,8-tetrahydr 70.5 15 0.0005 36.4 9.1 133 79-235 21-155 (274)
393 3grk_A Enoyl-(acyl-carrier-pro 70.2 25 0.00085 35.9 11.0 149 61-235 15-169 (293)
394 3pxx_A Carveol dehydrogenase; 70.0 22 0.00075 35.6 10.4 132 79-235 10-153 (287)
395 3gqv_A Enoyl reductase; medium 69.4 11 0.00037 40.1 8.2 47 77-138 163-211 (371)
396 1zsy_A Mitochondrial 2-enoyl t 69.0 17 0.00059 38.2 9.7 55 74-138 163-219 (357)
397 3o38_A Short chain dehydrogena 68.9 18 0.0006 36.0 9.3 135 78-235 21-160 (266)
398 2zb4_A Prostaglandin reductase 68.7 9.6 0.00033 40.0 7.6 54 74-137 154-209 (357)
399 1eg2_A Modification methylase 68.0 5.2 0.00018 42.2 5.3 53 175-239 57-109 (319)
400 3tjr_A Short chain dehydrogena 67.4 21 0.00072 36.6 9.8 62 78-148 30-91 (301)
401 1gu7_A Enoyl-[acyl-carrier-pro 67.0 10 0.00035 39.9 7.4 55 74-138 162-219 (364)
402 4a27_A Synaptic vesicle membra 66.7 3 0.0001 44.0 3.1 44 74-127 138-183 (349)
403 2hwk_A Helicase NSP2; rossman 66.0 3.9 0.00013 43.0 3.7 66 175-252 205-271 (320)
404 3o26_A Salutaridine reductase; 65.7 74 0.0025 31.7 13.4 62 79-148 12-73 (311)
405 2vn8_A Reticulon-4-interacting 64.3 14 0.00048 39.2 7.9 47 76-137 181-229 (375)
406 3ek2_A Enoyl-(acyl-carrier-pro 63.7 20 0.0007 35.4 8.5 135 77-235 12-153 (271)
407 4dry_A 3-oxoacyl-[acyl-carrier 62.7 32 0.0011 34.8 10.0 62 79-148 33-94 (281)
408 4eso_A Putative oxidoreductase 62.3 19 0.00065 35.9 8.1 131 78-235 7-138 (255)
409 3gaf_A 7-alpha-hydroxysteroid 61.6 38 0.0013 33.6 10.2 133 79-235 12-146 (256)
410 3ojo_A CAP5O; rossmann fold, c 61.0 77 0.0026 34.8 13.2 126 88-263 18-160 (431)
411 4da9_A Short-chain dehydrogena 60.9 40 0.0014 34.0 10.3 63 78-149 28-91 (280)
412 3nzo_A UDP-N-acetylglucosamine 60.6 46 0.0016 35.5 11.2 63 79-148 35-100 (399)
413 3nyw_A Putative oxidoreductase 60.3 30 0.001 34.3 9.0 134 79-235 7-144 (250)
414 3pi7_A NADH oxidoreductase; gr 60.2 13 0.00045 38.9 6.6 49 77-137 162-211 (349)
415 3lf2_A Short chain oxidoreduct 58.9 42 0.0014 33.4 10.0 133 79-234 8-144 (265)
416 1mxh_A Pteridine reductase 2; 58.6 1.4E+02 0.0046 29.6 13.7 61 79-148 11-73 (276)
417 3pk0_A Short-chain dehydrogena 58.4 47 0.0016 33.0 10.2 62 79-148 10-71 (262)
418 3f1l_A Uncharacterized oxidore 58.2 39 0.0013 33.4 9.5 60 79-146 12-71 (252)
419 3ioy_A Short-chain dehydrogena 57.7 69 0.0024 33.0 11.6 62 79-148 8-70 (319)
420 1fmc_A 7 alpha-hydroxysteroid 56.4 62 0.0021 31.4 10.5 61 79-148 11-71 (255)
421 3trk_A Nonstructural polyprote 56.3 7.9 0.00027 40.3 3.9 37 217-253 241-277 (324)
422 3is3_A 17BETA-hydroxysteroid d 56.1 60 0.0021 32.3 10.6 134 79-236 18-153 (270)
423 1xg5_A ARPG836; short chain de 55.5 73 0.0025 31.7 11.1 62 79-148 32-94 (279)
424 3g79_A NDP-N-acetyl-D-galactos 54.9 62 0.0021 36.1 11.3 46 217-263 129-179 (478)
425 4egf_A L-xylulose reductase; s 54.8 73 0.0025 31.7 10.9 133 79-235 20-157 (266)
426 3rih_A Short chain dehydrogena 53.1 32 0.0011 35.2 8.0 62 79-148 41-102 (293)
427 2p91_A Enoyl-[acyl-carrier-pro 52.9 51 0.0017 33.1 9.5 134 78-235 20-160 (285)
428 3ijr_A Oxidoreductase, short c 52.7 55 0.0019 33.2 9.7 134 78-235 46-182 (291)
429 3lyl_A 3-oxoacyl-(acyl-carrier 52.3 98 0.0033 30.0 11.2 61 79-148 5-65 (247)
430 3r1i_A Short-chain type dehydr 51.7 41 0.0014 34.0 8.5 76 63-148 17-92 (276)
431 3h7a_A Short chain dehydrogena 50.6 66 0.0023 31.8 9.7 61 79-148 7-67 (252)
432 3l77_A Short-chain alcohol deh 49.2 69 0.0024 30.9 9.5 61 80-148 3-63 (235)
433 3gg2_A Sugar dehydrogenase, UD 48.6 97 0.0033 34.0 11.5 35 88-129 9-43 (450)
434 3ppi_A 3-hydroxyacyl-COA dehyd 48.5 1.3E+02 0.0043 30.0 11.6 76 58-148 10-87 (281)
435 3sx2_A Putative 3-ketoacyl-(ac 47.9 88 0.003 31.1 10.3 62 78-148 12-85 (278)
436 3rkr_A Short chain oxidoreduct 47.6 1.3E+02 0.0043 29.7 11.3 62 78-148 28-89 (262)
437 3t4x_A Oxidoreductase, short c 47.5 1.1E+02 0.0039 30.2 11.0 62 79-148 10-72 (267)
438 2pd4_A Enoyl-[acyl-carrier-pro 47.3 42 0.0014 33.5 7.7 133 79-235 6-144 (275)
439 3r3s_A Oxidoreductase; structu 47.1 66 0.0022 32.7 9.3 133 79-235 49-185 (294)
440 2wyu_A Enoyl-[acyl carrier pro 46.8 42 0.0014 33.3 7.6 133 79-235 8-146 (261)
441 3i1j_A Oxidoreductase, short c 46.8 1E+02 0.0035 29.8 10.3 60 79-146 14-73 (247)
442 3svt_A Short-chain type dehydr 46.8 1E+02 0.0034 30.8 10.5 62 79-148 11-74 (281)
443 1wg8_A Predicted S-adenosylmet 46.7 11 0.00039 39.3 3.4 36 215-253 213-248 (285)
444 1geg_A Acetoin reductase; SDR 46.3 71 0.0024 31.4 9.2 60 80-148 3-62 (256)
445 3qiv_A Short-chain dehydrogena 46.2 85 0.0029 30.6 9.7 61 79-148 9-69 (253)
446 3v2g_A 3-oxoacyl-[acyl-carrier 46.1 91 0.0031 31.2 10.1 135 78-236 30-166 (271)
447 1xhl_A Short-chain dehydrogena 45.9 1.2E+02 0.0042 30.7 11.1 62 79-148 26-89 (297)
448 4a7p_A UDP-glucose dehydrogena 45.9 60 0.0021 35.8 9.2 119 85-253 12-146 (446)
449 1h5q_A NADP-dependent mannitol 45.7 79 0.0027 30.8 9.4 61 79-148 14-75 (265)
450 3v2h_A D-beta-hydroxybutyrate 44.9 93 0.0032 31.3 10.0 62 79-148 25-87 (281)
451 2ae2_A Protein (tropinone redu 44.8 1.8E+02 0.0062 28.4 11.9 61 79-148 9-69 (260)
452 3tfo_A Putative 3-oxoacyl-(acy 44.0 1.1E+02 0.0038 30.6 10.3 61 79-148 4-64 (264)
453 1h2b_A Alcohol dehydrogenase; 43.9 30 0.001 36.3 6.3 52 74-138 182-234 (359)
454 1qsg_A Enoyl-[acyl-carrier-pro 43.8 47 0.0016 32.9 7.4 133 79-235 9-148 (265)
455 4fc7_A Peroxisomal 2,4-dienoyl 43.3 61 0.0021 32.5 8.2 62 79-148 27-88 (277)
456 3ucx_A Short chain dehydrogena 42.6 76 0.0026 31.5 8.7 62 78-148 10-71 (264)
457 4gua_A Non-structural polyprot 42.5 27 0.00093 39.8 5.7 38 217-254 251-288 (670)
458 3t7c_A Carveol dehydrogenase; 42.4 1.2E+02 0.0043 30.6 10.5 61 79-148 28-100 (299)
459 1yb1_A 17-beta-hydroxysteroid 42.3 1.6E+02 0.0054 29.2 11.1 61 79-148 31-91 (272)
460 1y1p_A ARII, aldehyde reductas 42.3 2.7E+02 0.0093 27.7 15.0 63 78-148 10-73 (342)
461 1e7w_A Pteridine reductase; di 42.2 1.4E+02 0.0046 30.2 10.7 62 79-149 9-72 (291)
462 4dcm_A Ribosomal RNA large sub 42.2 79 0.0027 33.8 9.3 95 78-234 38-135 (375)
463 1w6u_A 2,4-dienoyl-COA reducta 42.1 82 0.0028 31.6 9.0 62 79-148 26-87 (302)
464 3pgx_A Carveol dehydrogenase; 41.7 69 0.0024 32.0 8.3 62 78-148 14-88 (280)
465 3f9i_A 3-oxoacyl-[acyl-carrier 41.7 1.3E+02 0.0044 29.2 10.2 60 77-148 12-71 (249)
466 1vl8_A Gluconate 5-dehydrogena 41.5 97 0.0033 30.8 9.4 61 79-148 21-82 (267)
467 3sju_A Keto reductase; short-c 41.5 73 0.0025 32.0 8.5 61 79-148 24-84 (279)
468 3dmg_A Probable ribosomal RNA 41.0 50 0.0017 35.5 7.5 52 175-253 100-151 (381)
469 3uve_A Carveol dehydrogenase ( 40.8 88 0.003 31.3 9.0 61 79-148 11-87 (286)
470 3u5t_A 3-oxoacyl-[acyl-carrier 40.7 65 0.0022 32.2 7.9 134 79-236 27-162 (267)
471 4g81_D Putative hexonate dehyd 40.4 93 0.0032 31.5 9.0 132 79-234 9-144 (255)
472 3rku_A Oxidoreductase YMR226C; 40.4 2.3E+02 0.0078 28.5 12.1 66 79-149 33-99 (287)
473 1g0o_A Trihydroxynaphthalene r 40.2 1.3E+02 0.0043 30.1 10.0 133 79-235 29-163 (283)
474 3oid_A Enoyl-[acyl-carrier-pro 40.2 95 0.0032 30.7 9.0 61 79-148 4-65 (258)
475 3fwz_A Inner membrane protein 40.1 1E+02 0.0034 27.5 8.4 53 80-148 8-60 (140)
476 2h7i_A Enoyl-[acyl-carrier-pro 40.0 35 0.0012 34.1 5.7 131 79-235 7-148 (269)
477 4ibo_A Gluconate dehydrogenase 39.7 1.1E+02 0.0039 30.5 9.6 61 79-148 26-86 (271)
478 1yxm_A Pecra, peroxisomal tran 39.6 1.3E+02 0.0045 30.1 10.1 62 79-148 18-83 (303)
479 1gee_A Glucose 1-dehydrogenase 39.5 1.1E+02 0.0037 29.8 9.2 61 79-148 7-68 (261)
480 3cxt_A Dehydrogenase with diff 38.9 1.4E+02 0.0049 30.1 10.3 61 79-148 34-94 (291)
481 2vhw_A Alanine dehydrogenase; 38.4 46 0.0016 35.6 6.7 43 78-129 167-209 (377)
482 3edm_A Short chain dehydrogena 38.4 66 0.0023 31.9 7.5 133 79-235 8-143 (259)
483 4fn4_A Short chain dehydrogena 38.3 1.5E+02 0.0053 29.8 10.3 61 79-148 7-67 (254)
484 1zem_A Xylitol dehydrogenase; 38.3 1.6E+02 0.0056 28.9 10.4 61 79-148 7-67 (262)
485 2bgk_A Rhizome secoisolaricire 38.0 90 0.0031 30.7 8.4 59 79-148 16-75 (278)
486 1edo_A Beta-keto acyl carrier 37.7 2E+02 0.0067 27.5 10.7 59 81-148 3-62 (244)
487 4dqx_A Probable oxidoreductase 37.6 1.2E+02 0.004 30.5 9.3 130 79-235 27-159 (277)
488 3ai3_A NADPH-sorbose reductase 37.4 1.7E+02 0.0058 28.7 10.4 61 79-148 7-68 (263)
489 4e6p_A Probable sorbitol dehyd 37.4 1.8E+02 0.0063 28.4 10.6 58 79-148 8-65 (259)
490 2vz8_A Fatty acid synthase; tr 37.1 7.1 0.00024 52.2 -0.0 106 77-233 1239-1346(2512)
491 3tka_A Ribosomal RNA small sub 36.6 20 0.00069 38.5 3.4 76 215-300 254-334 (347)
492 3afn_B Carbonyl reductase; alp 36.4 88 0.003 30.3 7.9 61 79-148 7-68 (258)
493 3oec_A Carveol dehydrogenase ( 36.4 1.9E+02 0.0063 29.6 10.8 132 79-234 46-193 (317)
494 3tsc_A Putative oxidoreductase 36.3 2E+02 0.0067 28.5 10.7 61 79-148 11-84 (277)
495 4dmm_A 3-oxoacyl-[acyl-carrier 36.3 2E+02 0.0068 28.6 10.8 133 79-235 28-164 (269)
496 2ehd_A Oxidoreductase, oxidore 36.2 1.3E+02 0.0045 28.7 9.1 57 79-148 5-61 (234)
497 4dyv_A Short-chain dehydrogena 36.1 1.5E+02 0.005 29.7 9.7 58 79-148 28-85 (272)
498 2zat_A Dehydrogenase/reductase 36.0 2.1E+02 0.007 28.0 10.7 61 79-148 14-74 (260)
499 3ftp_A 3-oxoacyl-[acyl-carrier 35.6 2E+02 0.0069 28.6 10.7 61 79-148 28-88 (270)
500 3gvc_A Oxidoreductase, probabl 35.4 1.2E+02 0.0042 30.4 9.0 58 79-148 29-86 (277)
No 1
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=100.00 E-value=2.1e-52 Score=454.84 Aligned_cols=212 Identities=29% Similarity=0.396 Sum_probs=181.9
Q ss_pred ecccccCCCccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccC
Q 004775 9 IEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAA 88 (731)
Q Consensus 9 ~eg~~~~~~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAA 88 (731)
.+|..+..|.+.+|++....|.....++.+.+.+. |......++.++.||++||+|+++|+++||++|||||||
T Consensus 85 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~~p~------~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAa 158 (359)
T 4fzv_A 85 SEGGQSAAPSPASWACSPNLRCFTFDRGDISRFPP------ARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 158 (359)
T ss_dssp C-----CCSSCHHHHSCSSCCEEECCTTCCCCCCC------CCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCT
T ss_pred cccccccCCCcccccCCccceEEecCCCChhcCCC------cccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCC
Confidence 45667778889999887666666667766655443 444566789999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEecccccCCCcccCCCCCCCC
Q 004775 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT------ANLIVTNHEAQHFPGCRANKNFSSAS 162 (731)
Q Consensus 89 PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~------~ni~vt~~Da~~fp~~~~~~~~~~~~ 162 (731)
|||||+|||+++. .|.|+|+|++..|+..|+++++|++. .++.+++.|+..++..
T Consensus 159 PGGKT~~la~~~~---------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~---------- 219 (359)
T 4fzv_A 159 PGGKTLALLQTGC---------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL---------- 219 (359)
T ss_dssp TCHHHHHHHHTTC---------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH----------
T ss_pred ccHHHHHHHHhcC---------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh----------
Confidence 9999999998653 58999999999999999999999875 4688999998875421
Q ss_pred ccccccccccccccccEEEecCCCCCC--CccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCC
Q 004775 163 DKGIESESNMGQLLFDRVLCDVPCSGD--GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (731)
Q Consensus 163 ~~~~~~~~~~~~~~FDrIL~D~PCSGd--Gtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p 240 (731)
....||+||+||||||+ |++|++|++|++|++.....|+.+|.+||.+|+++|||||+|||||||++|
T Consensus 220 ----------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 220 ----------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp ----------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred ----------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 23689999999999998 788999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHCC
Q 004775 241 VENEAVVAEILRKCE 255 (731)
Q Consensus 241 ~ENEaVV~~~L~~~~ 255 (731)
+|||+||+++|+++.
T Consensus 290 ~ENE~vV~~~L~~~~ 304 (359)
T 4fzv_A 290 LQNEYVVQGAIELLA 304 (359)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHhCC
Confidence 999999999999865
No 2
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=100.00 E-value=5e-48 Score=435.37 Aligned_cols=378 Identities=23% Similarity=0.368 Sum_probs=286.3
Q ss_pred CccccCCCCCcceeeccc-hhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCC--CCCEEEeeccCcchHH
Q 004775 17 IRPLPWYPNNLAWHSNFS-RMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQ--PDHFVLDMCAAPGSKT 93 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~-r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~--pg~~VLDmCAAPGsKT 93 (731)
.+++||+|+++.+..... ...+.+ ...| ..|.++.||++||+++.+|+++ +|++|||||||||+||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt 132 (479)
T 2frx_A 64 LTPIPWCEEGFWIERDNEDALPLGS------TAEH-----LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKT 132 (479)
T ss_dssp CCEETTEEEEEC---------CGGG------SHHH-----HTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHH
T ss_pred eeecCCCCceEEEecCcccccCccc------ChHH-----hCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHH
Confidence 568899998764321100 001222 2222 4599999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccc
Q 004775 94 FQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173 (731)
Q Consensus 94 ~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~ 173 (731)
++||+.+++ .|.|+|+|+++.|++.+++|++++|..++.+++.|+..++.. .
T Consensus 133 ~~lA~~~~~--------~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--------------------~ 184 (479)
T 2frx_A 133 TQISARMNN--------EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA--------------------V 184 (479)
T ss_dssp HHHHHHTTT--------CSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--------------------S
T ss_pred HHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--------------------c
Confidence 999998754 589999999999999999999999999999999998765310 1
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 174 ~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
...||+|||||||||.|+++++|+++..|++.....++.+|.+||.+|+++|||||+|||||||++++|||+||+++|++
T Consensus 185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~ 264 (479)
T 2frx_A 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264 (479)
T ss_dssp TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHH
T ss_pred cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHH
Confidence 25799999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCcc
Q 004775 254 CEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 333 (731)
Q Consensus 254 ~~g~~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (731)
+++.++++++...+| |...|
T Consensus 265 ~~~~~~~~~~~~~~~------~~~~~------------------------------------------------------ 284 (479)
T 2frx_A 265 YPDAVEFLPLGDLFP------GANKA------------------------------------------------------ 284 (479)
T ss_dssp STTTEEECCCTTSST------TGGGG------------------------------------------------------
T ss_pred CCCceeccccccccc------ccccc------------------------------------------------------
Confidence 876566655432111 10000
Q ss_pred cchhhhcccccCCchhhhcccccCCceEEEcccCCCCCceEEEEEEEcCCCccccccCCcccccCCCCCCCCccccCccc
Q 004775 334 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDT 413 (731)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (731)
+..+.|+|++||.++|+|||||+|+|.+..+... . .
T Consensus 285 ---------------------~~~~g~~r~~P~~~~~dGfF~A~l~k~~~~~~~~---~--------~------------ 320 (479)
T 2frx_A 285 ---------------------LTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALP---A--------P------------ 320 (479)
T ss_dssp ---------------------BCTTSCEEECTTTTTSCCEEEEEEEECSCCCCCC---C--------C------------
T ss_pred ---------------------cccCCeEEECCCCCCcCccEEEEEEEcCCCCCcc---c--------c------------
Confidence 1124789999999999999999999976432100 0 0
Q ss_pred cccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccCC
Q 004775 414 EEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGID 493 (731)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~d 493 (731)
+.+.+ ..
T Consensus 321 ----------------------------------------------------------------~~~~~---------~~ 327 (479)
T 2frx_A 321 ----------------------------------------------------------------KYKVG---------NF 327 (479)
T ss_dssp ----------------------------------------------------------------CCCCC---------CC
T ss_pred ----------------------------------------------------------------ccccc---------cC
Confidence 00000 01
Q ss_pred CcccCC--ChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEec
Q 004775 494 PVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT 571 (731)
Q Consensus 494 P~~f~~--d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~vs~~vk~il~~n~~~g~~lkii~~GvK~F~rq~ 571 (731)
||..+. ..+.|+.+.++|+++.. .+..|+.|+ +.||++......++ .+|||+..|+++.+...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~p~~~~~~~-------~~lr~~r~G~~lg~~kk 392 (479)
T 2frx_A 328 PFSPVKDREAGQIRQAATGVGLNWD--ENLRLWQRD------KELWLFPVGIEALI-------GKVRFSRLGIKLAETHN 392 (479)
T ss_dssp SCEECCHHHHHHHHHHHHTTTBCCC--TTEEEEESS------SEEEEEEHHHHTTB-------TTBCCSEESEEEEEEET
T ss_pred CccccchhhHHHHHHHHHHcCCCCC--CCceEEEEC------CEEEEeccccchhc-------cCcEEEecceEEEEEec
Confidence 222222 23446777888988633 234677763 67999998765532 46999999999998762
Q ss_pred CCCCCCcccceeeccchhhhhhhcccCcEEEcCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEe
Q 004775 572 SREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 644 (731)
Q Consensus 572 ~~~~~~~~c~~Ri~~eGl~~i~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~e~~~~~~~l~~G~~vl~~~ 644 (731)
=+||.++.....+.+.-.++++.++.+++...|..+.+....- ..-|-++|.++
T Consensus 393 --------~rf~Ps~~la~~l~~~~~~~~~~l~~~~~~~yL~Ge~i~~~~~-----------~~~G~vlv~~~ 446 (479)
T 2frx_A 393 --------KGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDVYPQAA-----------PVADDVLVTFQ 446 (479)
T ss_dssp --------TEEEECHHHHHHHBCSSSSSEEECCHHHHHHHHTTCCCCCSSC-----------CSCSEEEEEET
T ss_pred --------CCceEcHHHHHhcchhhcCcEEECCHHHHHHHhcCCCCcCCCC-----------CCCCEEEEEEC
Confidence 2799999999888777788999999999999998776654211 13476666665
No 3
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=100.00 E-value=7.9e-46 Score=414.64 Aligned_cols=358 Identities=23% Similarity=0.377 Sum_probs=268.6
Q ss_pred ccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHH
Q 004775 18 RPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLL 97 (731)
Q Consensus 18 ~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLa 97 (731)
.++||+|+++. . . .+.+ ...| ..|.++.||.+||+++.+|++++|++|||||||||+||++||
T Consensus 62 ~~~~~~~~~~~---~-~--~~~~---~~~~--------~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA 124 (456)
T 3m4x_A 62 QPAPYSNEGFL---G-T--VNGK---SFLH--------QAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLA 124 (456)
T ss_dssp CBCTTCTTEEE---S-C--CCTT---SHHH--------HTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHH
T ss_pred CCCCCCcceEE---c-C--CCCC---ChHH--------hCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHH
Confidence 48999999763 1 1 1222 2222 359999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccc
Q 004775 98 EIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177 (731)
Q Consensus 98 e~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~F 177 (731)
+.+++ .|.|+|+|+++.|+..+++|++++|..|+.+++.|+..++. .....|
T Consensus 125 ~~~~~--------~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~--------------------~~~~~F 176 (456)
T 3m4x_A 125 AQMKG--------KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP--------------------HFSGFF 176 (456)
T ss_dssp HHHTT--------CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH--------------------HHTTCE
T ss_pred HHcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh--------------------hccccC
Confidence 99864 58999999999999999999999999999999999876431 012579
Q ss_pred cEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCc
Q 004775 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 257 (731)
Q Consensus 178 DrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~ 257 (731)
|+||+||||||.|++|++|+++..|++.....+..+|.+||.+|+++|||||+|||||||++|+|||+||.++|++++
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~-- 254 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP-- 254 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS--
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC--
Confidence 999999999999999999999889999999999999999999999999999999999999999999999999999986
Q ss_pred EEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCcccchh
Q 004775 258 VELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQ 337 (731)
Q Consensus 258 ~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (731)
++++++.. .+++ .+|+..|...
T Consensus 255 ~~l~~~~~-~~~~--~~~~~~~~~~------------------------------------------------------- 276 (456)
T 3m4x_A 255 VTIEEIPL-TQSV--SSGRSEWGSV------------------------------------------------------- 276 (456)
T ss_dssp EEEECCCC-SSCC--EECCGGGSSS-------------------------------------------------------
T ss_pred CEEEeccc-cccc--cccccccccc-------------------------------------------------------
Confidence 99988742 1211 1233333100
Q ss_pred hhcccccCCchhhhcccccCCceEEEcccCCCCCceEEEEEEEcCCCccccccCCcccccCCCCCCCCccccCccccccc
Q 004775 338 VEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVN 417 (731)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (731)
-.++.|+|++||.++|+|||||+|+|.+..+.. + ..
T Consensus 277 -----------------~~~~~~~r~~P~~~~~dGFF~A~l~k~~~~~~~----~--------~~--------------- 312 (456)
T 3m4x_A 277 -----------------AGLEKTIRIWPHKDQGEGHFVAKLTFHGQNQMH----K--------EK--------------- 312 (456)
T ss_dssp -----------------TTGGGSEEECTTTSSSSCEEEEEEEECSCCCCC----C-------------------------
T ss_pred -----------------cccCCeEEECCCCCCCcCeEEEEEEECCCCccc----c--------cc---------------
Confidence 014689999999999999999999997642100 0 00
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccCCCccc
Q 004775 418 GMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIF 497 (731)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~dP~~f 497 (731)
. .....+.+. .+
T Consensus 313 ---------------~-----------------------------------------~~~~~~~~~---------~~--- 324 (456)
T 3m4x_A 313 ---------------K-----------------------------------------TRKKSKVQM---------TK--- 324 (456)
T ss_dssp ---------------------------------------------------------------CSC---------CH---
T ss_pred ---------------c-----------------------------------------ccccccccC---------cH---
Confidence 0 000000000 00
Q ss_pred CCChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEecCCCCCC
Q 004775 498 FNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNS 577 (731)
Q Consensus 498 ~~d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~vs~~vk~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~~ 577 (731)
...+.|+....-|++. + ...++.++ ..||++-....+ -.+|||+..|+++=+-..
T Consensus 325 -~~~~~~~~~~~~~~~~---~-~~~~~~~~------~~~~~~p~~~~~--------~~~l~~~r~G~~lg~~kk------ 379 (456)
T 3m4x_A 325 -EQEKLWTEFSNDFHYE---A-TGRLLVFN------DHLWEVPELAPS--------LDGLKVVRTGLHLGDFKK------ 379 (456)
T ss_dssp -HHHHHHHHHHHHTTCC---C-CSEEEEET------TEEEEECTTCCC--------CTTCCEEEESEEEEEEET------
T ss_pred -HHHHHHHHHHHHhccC---C-CCceEEEC------CEEEEeccCccc--------ccCCeEEEcCceeeEEeC------
Confidence 0112344444444442 2 23565553 689988765321 157999999999977542
Q ss_pred cccceeeccchhhhhhhcccCcEEEcCHHHHHHHhhcCCCCc
Q 004775 578 APCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKF 619 (731)
Q Consensus 578 ~~c~~Ri~~eGl~~i~p~~~~r~v~~~~~d~~~lL~~~~~~~ 619 (731)
=+|+.++...-.+.+--.++.+.++.++....|..+.+..
T Consensus 380 --~~f~p~~~la~~l~~~~~~~~~~l~~~~~~~yl~ge~i~~ 419 (456)
T 3m4x_A 380 --NRFEPSYALALATKKIENIPCLPITQKEWQSYTAGETFQR 419 (456)
T ss_dssp --TEEEECHHHHHTCCCGGGSCEEEECHHHHHHHHHTCCEEC
T ss_pred --CceeECHHHHHhcCccccCcEEEcCHHHHHHHhCCCCccc
Confidence 2788888877766665556789999999999998766543
No 4
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=100.00 E-value=6.5e-45 Score=388.97 Aligned_cols=181 Identities=26% Similarity=0.365 Sum_probs=149.5
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
+.|.+++||.+||+++.+|++++|++|||||||||+||++||+++++ .|.|+|+|+++.|++.+++|++++|
T Consensus 80 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~--------~g~V~a~D~~~~~l~~~~~n~~r~g 151 (309)
T 2b9e_A 80 RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN--------QGKIFAFDLDAKRLASMATLLARAG 151 (309)
T ss_dssp HTTSEEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTT--------CSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 35999999999999999999999999999999999999999998864 6899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh--hcccccccchHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR--KWNVGLGNGLHSL 213 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~--~w~~~~~~~L~~l 213 (731)
..|+.+++.|+..++... .....||+||+||||||.|+++++|+++. .|++.+...++.+
T Consensus 152 ~~~v~~~~~D~~~~~~~~------------------~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~ 213 (309)
T 2b9e_A 152 VSCCELAEEDFLAVSPSD------------------PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGF 213 (309)
T ss_dssp CCSEEEEECCGGGSCTTC------------------GGGTTEEEEEECCCCCC------------------CCHHHHHHH
T ss_pred CCeEEEEeCChHhcCccc------------------cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHH
Confidence 999999999987754210 01147999999999999999999999733 4678888899999
Q ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
|.+||.+|+++|+ ||+|||||||++++|||+||.++|+++++.|+++++
T Consensus 214 Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~~ 262 (309)
T 2b9e_A 214 QQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPA 262 (309)
T ss_dssp HHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECCC
T ss_pred HHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCCCcEEEecc
Confidence 9999999999998 999999999999999999999999998766888765
No 5
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=100.00 E-value=3.6e-43 Score=375.51 Aligned_cols=246 Identities=32% Similarity=0.510 Sum_probs=197.3
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
.+++||+|+++.+ ......+ ..+..| ..|.++.||.+||+++.+|++++|++|||+|||||+||++|
T Consensus 70 ~~~~~~~~~~~~~--~~~~~~~------~~~~~~-----~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~l 136 (315)
T 1ixk_A 70 FKRVPWAKEGFCL--TREPFSI------TSTPEF-----LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYL 136 (315)
T ss_dssp EEEETTEEEEEEE--EECSSCG------GGSHHH-----HTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHH
T ss_pred eeECCCCCceEEE--eCCCCCc------ccChhH-----hcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHH
Confidence 3578999986533 1111122 223333 34999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
++.+++ .|.|+|+|+++.|++.++++++++|..++.+++.|+..++. ....
T Consensus 137 a~~~~~--------~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~---------------------~~~~ 187 (315)
T 1ixk_A 137 AQLMRN--------DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE---------------------LNVE 187 (315)
T ss_dssp HHHTTT--------CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG---------------------GCCC
T ss_pred HHHhCC--------CCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc---------------------cccc
Confidence 998753 58999999999999999999999999899999999877542 1257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
||+||+|+||||.|+++++|+++..|++.....++.+|.++|.++.++|||||+|||||||++++|||+||.++|++++
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~- 266 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD- 266 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS-
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCC-
Confidence 9999999999999999999999889999999999999999999999999999999999999999999999999999864
Q ss_pred cEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCcccch
Q 004775 257 SVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQ 336 (731)
Q Consensus 257 ~~elvd~s~~lP~l~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (731)
++++++.. ..+|+..|.... |.
T Consensus 267 -~~~~~~~~------~~~~~~~~~~~~-----------------------~~---------------------------- 288 (315)
T 1ixk_A 267 -VELLPLKY------GEPALTNPFGIE-----------------------LS---------------------------- 288 (315)
T ss_dssp -EEEECCCS------SEECCSSGGGCC-----------------------CC----------------------------
T ss_pred -CEEecCCc------cccCcccccccc-----------------------cc----------------------------
Confidence 88887631 224555553110 00
Q ss_pred hhhcccccCCchhhhcccccCCceEEEcccCCCCCceEEEEEEEc
Q 004775 337 QVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 381 (731)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~ 381 (731)
. .+++|+|++||.++|+|||||+|+|+
T Consensus 289 -------------~-----~~~~~~r~~P~~~~~dGfF~A~l~k~ 315 (315)
T 1ixk_A 289 -------------E-----EIKNARRLYPDVHETSGFFIAKIRKL 315 (315)
T ss_dssp -------------G-----GGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred -------------c-----ccCCEEEECCCCCCcccEEEEEEEEC
Confidence 0 14689999999999999999999984
No 6
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=100.00 E-value=2.9e-43 Score=394.54 Aligned_cols=204 Identities=32% Similarity=0.525 Sum_probs=177.5
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
.+++||+|+++.+.- ...+.+. ..| ..|.++.||++||+++.+|++++|++|||||||||+||++|
T Consensus 54 ~~~~~~~~~g~~l~~---~~~~~~~---~~~--------~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~L 119 (464)
T 3m6w_A 54 LRPIPWCQEGFYYPE---EARPGPH---PFF--------YAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHL 119 (464)
T ss_dssp CEEETTEEEEEECCT---TCCCSSS---HHH--------HTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHH
T ss_pred ceecCCCCceEEECC---CCCcccC---hHH--------hCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHH
Confidence 578999999764321 1112222 222 35999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
|+.+.+ .|.|+|+|+|+.|+..+++|++++|.. +.+++.|+..++.. ....
T Consensus 120 A~~~~~--------~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~--------------------~~~~ 170 (464)
T 3m6w_A 120 AARMGG--------KGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA--------------------FGTY 170 (464)
T ss_dssp HHHTTT--------CSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH--------------------HCSC
T ss_pred HHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh--------------------cccc
Confidence 998764 589999999999999999999999998 89999988764310 1257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
||+||+||||||.|+++++|++...|++.....+..+|.+||..|+++|||||+|||||||++|+|||+||.++|++++
T Consensus 171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~- 249 (464)
T 3m6w_A 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHP- 249 (464)
T ss_dssp EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT-
T ss_pred CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCC-
Confidence 9999999999999999999999888999999999999999999999999999999999999999999999999999986
Q ss_pred cEEEEecC
Q 004775 257 SVELVDVS 264 (731)
Q Consensus 257 ~~elvd~s 264 (731)
.++++++.
T Consensus 250 ~~~l~~~~ 257 (464)
T 3m6w_A 250 EFRLEDAR 257 (464)
T ss_dssp TEEEECCC
T ss_pred CcEEEecc
Confidence 58888874
No 7
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-39 Score=362.52 Aligned_cols=205 Identities=30% Similarity=0.449 Sum_probs=176.4
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
..+.+|+|+++.+. .+..+...+. | ..|.++.||.+||+++.++++++|++|||+|||||+||++|
T Consensus 212 ~~~~~~~~~~~~~~---~~~~~~~~~~---~--------~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~l 277 (450)
T 2yxl_A 212 VVRSERVPTILKIK---GPYNFDTSSA---F--------NEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHL 277 (450)
T ss_dssp EEECSSCTTEEEEE---SCCCTTSCHH---H--------HTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHH
T ss_pred ceecCccCceEEeC---CCCCcccCch---h--------hCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHH
Confidence 35789999976553 2223333222 2 34999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
++.+.+ .|.|+|+|+++.|+..++++++++|..++.+++.|+..++.. .....
T Consensus 278 a~~~~~--------~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-------------------~~~~~ 330 (450)
T 2yxl_A 278 AELMKN--------KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-------------------IGEEV 330 (450)
T ss_dssp HHHTTT--------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-------------------SCSSC
T ss_pred HHHcCC--------CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-------------------hccCC
Confidence 998753 489999999999999999999999998999999998775421 11257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
||+||+|+||||.|+++++|+++..|++.....++.+|.++|.++.++|||||+|||||||++++|||++|..+|+++++
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~ 410 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPE 410 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSS
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999998763
Q ss_pred cEEEEec
Q 004775 257 SVELVDV 263 (731)
Q Consensus 257 ~~elvd~ 263 (731)
++++++
T Consensus 411 -~~~~~~ 416 (450)
T 2yxl_A 411 -FKLVPL 416 (450)
T ss_dssp -CEECCC
T ss_pred -CEEeec
Confidence 666554
No 8
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=100.00 E-value=3.8e-39 Score=337.09 Aligned_cols=179 Identities=35% Similarity=0.540 Sum_probs=149.0
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
..|.++.|+.+|++++.+|++++|++|||+|||||++|.++++.+.+ .+.|+|+|+++.|++.++++++++|
T Consensus 61 ~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~--------~~~v~avD~~~~~l~~~~~~~~~~g 132 (274)
T 3ajd_A 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKN--------KGTIVAVEISKTRTKALKSNINRMG 132 (274)
T ss_dssp HTTSEEECCSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTT--------CSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hCCeEEEeCHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEECCCHHHHHHHHHHHHHhC
Confidence 35999999999999999999999999999999999999999998753 4899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
..++.+++.|+..++.. .......||+||+|+||||.|+++++| .|+......+...|.
T Consensus 133 ~~~v~~~~~D~~~~~~~-----------------~~~~~~~fD~Vl~d~Pcs~~g~~~~~p----~~~~~~~~~~~~~~~ 191 (274)
T 3ajd_A 133 VLNTIIINADMRKYKDY-----------------LLKNEIFFDKILLDAPCSGNIIKDKNR----NVSEEDIKYCSLRQK 191 (274)
T ss_dssp CCSEEEEESCHHHHHHH-----------------HHHTTCCEEEEEEEECCC----------------HHHHTGGGTCHH
T ss_pred CCcEEEEeCChHhcchh-----------------hhhccccCCEEEEcCCCCCCcccccCC----CCCHHHHHHHHHHHH
Confidence 98999999998764310 000125799999999999999999987 577888888889999
Q ss_pred HHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
++|.++.++|||||+|||||||++++|||++|.++|+++. .++++++.
T Consensus 192 ~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~-~~~~~~~~ 239 (274)
T 3ajd_A 192 ELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRN-DVELIIIK 239 (274)
T ss_dssp HHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCS-SEEEECCC
T ss_pred HHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCC-CcEEecCc
Confidence 9999999999999999999999999999999999999875 68988874
No 9
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=100.00 E-value=1.4e-37 Score=345.27 Aligned_cols=200 Identities=32% Similarity=0.434 Sum_probs=169.5
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
..+.+|+|+++.+.- ...+...+ .| ..|.++.|+.+|++++.+|++++|++|||+|||||+||.++
T Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~------~~-----~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~l 264 (429)
T 1sqg_A 199 GFPHADYPDAVRLET---PAPVHALP------GF-----EDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHI 264 (429)
T ss_dssp EECCTTCTTEEEESS---CCCGGGST------TG-----GGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHH
T ss_pred eeecCCCCCEEEECC---CCCcccCh------HH-----hCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHH
Confidence 356789998765421 12232222 22 45999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
++.+. .|.|+|+|+++.|+..++++++++|.. +.+.+.|+..++. ......
T Consensus 265 a~~~~---------~~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~-------------------~~~~~~ 315 (429)
T 1sqg_A 265 LEVAP---------EAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQ-------------------WCGEQQ 315 (429)
T ss_dssp HHHCT---------TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHH-------------------HHTTCC
T ss_pred HHHcC---------CCEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchh-------------------hcccCC
Confidence 99853 489999999999999999999999974 6778888776431 011257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g 256 (731)
||+||+|+||||.|+++++|++...|++.....++.+|.++|.++.++|||||+|||||||+++.|||++|.++|++++
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~- 394 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA- 394 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT-
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC-
Confidence 9999999999999999999999888999999999999999999999999999999999999999999999999999875
Q ss_pred cEEE
Q 004775 257 SVEL 260 (731)
Q Consensus 257 ~~el 260 (731)
.+++
T Consensus 395 ~~~~ 398 (429)
T 1sqg_A 395 DAEL 398 (429)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 3444
No 10
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.69 E-value=6.9e-17 Score=177.82 Aligned_cols=182 Identities=16% Similarity=0.130 Sum_probs=139.5
Q ss_pred CccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHH
Q 004775 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (731)
Q Consensus 17 ~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (731)
+.++....+++.|.++.... .++|.+..|..+..+...++ ++|.+|||+|||+|++|+++
T Consensus 173 ~~~~~v~E~g~~f~vd~~~~------------------~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~ 232 (393)
T 4dmg_A 173 PEVLEVEEDGLRFPIPLALA------------------QKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRA 232 (393)
T ss_dssp CSEEEEEETTEEEEEETTTC------------------CTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHH
T ss_pred CCcEEEEECCEEEEEechhc------------------cccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHH
Confidence 45556667777777765432 35788888988877665443 57999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004775 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (731)
Q Consensus 97 ae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (731)
|.. + .. |+|+|+|+.+++.+++|+++++..+ .+.+.|+..+.. .. ...
T Consensus 233 a~~-g---------a~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~-------------------~~-~~~ 280 (393)
T 4dmg_A 233 ARK-G---------AY-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLR-------------------GL-EGP 280 (393)
T ss_dssp HHT-T---------CE-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHH-------------------TC-CCC
T ss_pred HHc-C---------Ce-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHH-------------------Hh-cCC
Confidence 874 1 34 9999999999999999999998864 455777765321 01 133
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcH--HHHHHHHHHC
Q 004775 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKC 254 (731)
Q Consensus 177 FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENE--aVV~~~L~~~ 254 (731)
||+|++||||-..+ ..........+.+++..++++|||||+|+|+|||.++.+++ .+|..++.+.
T Consensus 281 fD~Ii~dpP~f~~~-------------~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~ 347 (393)
T 4dmg_A 281 FHHVLLDPPTLVKR-------------PEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADL 347 (393)
T ss_dssp EEEEEECCCCCCSS-------------GGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCcCCCC-------------HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999983322 11233456678899999999999999999999999999888 7888888887
Q ss_pred CCcEEEEec
Q 004775 255 EGSVELVDV 263 (731)
Q Consensus 255 ~g~~elvd~ 263 (731)
+..++++..
T Consensus 348 g~~~~i~~~ 356 (393)
T 4dmg_A 348 GRRLRVHRV 356 (393)
T ss_dssp TCCEEEEEE
T ss_pred CCeEEEEEE
Confidence 777877765
No 11
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.68 E-value=2.1e-16 Score=162.32 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=106.7
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.++||++|||+|||||++|.++++.++. +|.|+|+|+++.++..|.+.+++. .|+.+...|+......
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~--------~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~- 140 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIEL--------NGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSY- 140 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTT--------TSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGT-
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCC--------CCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhh-
Confidence 45899999999999999999999999863 699999999999987777666543 5888899998753210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIV 232 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~-lLKpGG~LV 232 (731)
......||+|++|++- ..|.++|...++ +|||||+||
T Consensus 141 -----------------~~~~~~~D~I~~d~a~-------------------------~~~~~il~~~~~~~LkpGG~lv 178 (232)
T 3id6_C 141 -----------------KSVVENVDVLYVDIAQ-------------------------PDQTDIAIYNAKFFLKVNGDML 178 (232)
T ss_dssp -----------------TTTCCCEEEEEECCCC-------------------------TTHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------hccccceEEEEecCCC-------------------------hhHHHHHHHHHHHhCCCCeEEE
Confidence 0112579999999861 234556655444 999999999
Q ss_pred EE---eC---CCCCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004775 233 YS---TC---SMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (731)
Q Consensus 233 YS---TC---Sl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP 268 (731)
+| +| +++|.||.+.+.++|++++ |++++.....|
T Consensus 179 isik~~~~d~t~~~~e~~~~~~~~L~~~g--f~~~~~~~l~p 218 (232)
T 3id6_C 179 LVIKARSIDVTKDPKEIYKTEVEKLENSN--FETIQIINLDP 218 (232)
T ss_dssp EEEC-------CCSSSSTTHHHHHHHHTT--EEEEEEEECTT
T ss_pred EEEccCCcccCCCHHHHHHHHHHHHHHCC--CEEEEEeccCC
Confidence 77 89 9999999999999999875 88887754334
No 12
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.61 E-value=3.3e-15 Score=163.22 Aligned_cols=164 Identities=20% Similarity=0.172 Sum_probs=127.9
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
.+|.+..|.....+.. +. ++.+|||+|||+|+++..++.. .+.|+|+|+++..++.+++|++.++
T Consensus 191 ~~g~f~~~~~~~~~~~---~~-~~~~VLDlg~G~G~~~~~la~~-----------~~~v~~vD~s~~~~~~a~~n~~~n~ 255 (382)
T 1wxx_A 191 KTGAYLDQRENRLYME---RF-RGERALDVFSYAGGFALHLALG-----------FREVVAVDSSAEALRRAEENARLNG 255 (382)
T ss_dssp CCCCCGGGHHHHHHGG---GC-CEEEEEEETCTTTHHHHHHHHH-----------EEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cCccccchHHHHHHHH---hc-CCCeEEEeeeccCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 4577777766554433 33 7899999999999999999886 2689999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 136 ~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
..++.+.+.|+..+... .......||+|++|||+.+... .........+.
T Consensus 256 ~~~~~~~~~d~~~~~~~-----------------~~~~~~~fD~Ii~dpP~~~~~~-------------~~~~~~~~~~~ 305 (382)
T 1wxx_A 256 LGNVRVLEANAFDLLRR-----------------LEKEGERFDLVVLDPPAFAKGK-------------KDVERAYRAYK 305 (382)
T ss_dssp CTTEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCCCSCCST-------------TSHHHHHHHHH
T ss_pred CCCceEEECCHHHHHHH-----------------HHhcCCCeeEEEECCCCCCCCh-------------hHHHHHHHHHH
Confidence 98888999988764210 0001357999999999755331 12234456788
Q ss_pred HHHHHHHhhccCCCEEEEEeCCCCCcCc--HHHHHHHHHHCCCcEEEEecC
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSMNPVEN--EAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl~p~EN--EaVV~~~L~~~~g~~elvd~s 264 (731)
+++..++++|+|||+|+|+||+.+..++ +.++..++.+.+..++++...
T Consensus 306 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~ 356 (382)
T 1wxx_A 306 EVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKR 356 (382)
T ss_dssp HHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 9999999999999999999999888775 688888888877778887753
No 13
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.56 E-value=9.3e-15 Score=171.76 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=131.6
Q ss_pred CCccccCCCCCcceeeccchhhhcchhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHH
Q 004775 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQ 95 (731)
Q Consensus 16 ~~~~~pw~p~~l~w~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~q 95 (731)
.+.++++.++++.|.++.... .++|.+..|.....+...+ .+|.+|||+|||+|+.+++
T Consensus 498 ~~~~~~v~E~g~~~~v~~~~~------------------~~tG~f~d~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~ 556 (703)
T 3v97_A 498 KGEFLEVTEYNAHLWVNLTDY------------------LDTGLFLDHRIARRMLGQM---SKGKDFLNLFSYTGSATVH 556 (703)
T ss_dssp CSCCEEEEETTEEEEECSSSS------------------SSCSCCGGGHHHHHHHHHH---CTTCEEEEESCTTCHHHHH
T ss_pred CCceEEEEECCEEEEEecccc------------------ccCCCcccHHHHHHHHHHh---cCCCcEEEeeechhHHHHH
Confidence 355666777887777765432 2578888888766555443 3699999999999999999
Q ss_pred HHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccc
Q 004775 96 LLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173 (731)
Q Consensus 96 Lae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~ 173 (731)
++.. +...|+|+|+|+.+++.+++|+++++.. ++.+.+.|+..+.. ..
T Consensus 557 aa~~----------ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~--------------------~~ 606 (703)
T 3v97_A 557 AGLG----------GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLR--------------------EA 606 (703)
T ss_dssp HHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH--------------------HC
T ss_pred HHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH--------------------hc
Confidence 8762 2468999999999999999999999986 79999999876311 11
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 174 ~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
..+||+|++||||.+.+.- ..........+.+++..++++|+|||+|++|||+-....+++ .|++
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~-----------~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~----~l~~ 671 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKR-----------MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLD----GLAK 671 (703)
T ss_dssp CCCEEEEEECCCSBC------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHH----HHHH
T ss_pred CCCccEEEECCccccCCcc-----------chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHH----HHHH
Confidence 2579999999998664420 011234556788999999999999999999999966666644 4455
Q ss_pred CCCcEEEEec
Q 004775 254 CEGSVELVDV 263 (731)
Q Consensus 254 ~~g~~elvd~ 263 (731)
.+..++.+..
T Consensus 672 ~g~~~~~i~~ 681 (703)
T 3v97_A 672 LGLKAQEITQ 681 (703)
T ss_dssp TTEEEEECTT
T ss_pred cCCceeeeee
Confidence 5533334433
No 14
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.53 E-value=1.7e-14 Score=158.16 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=125.7
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
++|.+..|..+..+...+ .++.+|||+|||+|+++.+++.. +.+.|+|+|+++..++.+++|+++++
T Consensus 201 ~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~----------g~~~V~~vD~s~~al~~a~~n~~~ng 267 (396)
T 3c0k_A 201 KTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG----------GCSQVVSVDTSQEALDIARQNVELNK 267 (396)
T ss_dssp TTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 456666666654444333 68999999999999999999874 13689999999999999999999999
Q ss_pred C-C-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004775 136 T-A-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (731)
Q Consensus 136 ~-~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (731)
. . ++.+...|+..+... .......||+|++|||+.+... .........
T Consensus 268 l~~~~v~~~~~D~~~~~~~-----------------~~~~~~~fD~Ii~dpP~~~~~~-------------~~~~~~~~~ 317 (396)
T 3c0k_A 268 LDLSKAEFVRDDVFKLLRT-----------------YRDRGEKFDVIVMDPPKFVENK-------------SQLMGACRG 317 (396)
T ss_dssp CCGGGEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCSSTTTCS-------------SSSSCCCTH
T ss_pred CCccceEEEECCHHHHHHH-----------------HHhcCCCCCEEEECCCCCCCCh-------------hHHHHHHHH
Confidence 8 6 899999988764210 0001257999999999755321 112223345
Q ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCc--CcHHHHHHHHHHCCCcEEEEec
Q 004775 214 QVQIAMRGISLLKVGGRIVYSTCSMNPV--ENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 214 Q~~IL~rAl~lLKpGG~LVYSTCSl~p~--ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+.+++..++++|+|||+|++|+|+.+.. +++.+|..++.+.+..++++..
T Consensus 318 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~ 369 (396)
T 3c0k_A 318 YKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 6789999999999999999999997766 6788999888887777887765
No 15
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.51 E-value=3.4e-14 Score=155.73 Aligned_cols=164 Identities=17% Similarity=0.107 Sum_probs=121.7
Q ss_pred cCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 57 IGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 57 ~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
+|.+..|.....+...+ ++++.+|||+|||+|++|..++.. +.+.|+|+|+++..++.+++|+++++.
T Consensus 198 tg~f~~~~~~~~~~~~~--~~~~~~VLDl~~G~G~~~~~la~~----------g~~~v~~vD~s~~~l~~a~~n~~~n~~ 265 (396)
T 2as0_A 198 TGFFLDQRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIA----------GADEVIGIDKSPRAIETAKENAKLNGV 265 (396)
T ss_dssp SCCCSTTHHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCccCCHHHHHHHHHHH--hhCCCeEEEecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 45555555544433333 248999999999999999999864 146899999999999999999999998
Q ss_pred C-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 137 A-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 137 ~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
. ++.+.+.|+..+... .......||+|++|||+.+... .........+.
T Consensus 266 ~~~v~~~~~d~~~~~~~-----------------~~~~~~~fD~Vi~dpP~~~~~~-------------~~~~~~~~~~~ 315 (396)
T 2as0_A 266 EDRMKFIVGSAFEEMEK-----------------LQKKGEKFDIVVLDPPAFVQHE-------------KDLKAGLRAYF 315 (396)
T ss_dssp GGGEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCCCSCSSG-------------GGHHHHHHHHH
T ss_pred CccceEEECCHHHHHHH-----------------HHhhCCCCCEEEECCCCCCCCH-------------HHHHHHHHHHH
Confidence 7 899999988664210 0001257999999999754321 11223345678
Q ss_pred HHHHHHHhhccCCCEEEEEeCCCCCcC--cHHHHHHHHHHCCCcEEEEe
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSMNPVE--NEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl~p~E--NEaVV~~~L~~~~g~~elvd 262 (731)
+++..++++|+|||+|+|+||+.+..+ .+.++..++...+..++++.
T Consensus 316 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 316 NVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp HHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 899999999999999999999977655 46778777777765677765
No 16
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.46 E-value=1.5e-13 Score=150.48 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=114.2
Q ss_pred cCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 57 IGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 57 ~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
+|.+..|.....+...++ .+|.+|||+|||+|+.+..+|.. ....|+|+|+++..++.+++|++.++.
T Consensus 193 t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~----------ga~~V~~vD~s~~al~~A~~N~~~n~~ 260 (385)
T 2b78_A 193 TGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG----------GAMATTSVDLAKRSRALSLAHFEANHL 260 (385)
T ss_dssp CSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT----------TBSEEEEEESCTTHHHHHHHHHHHTTC
T ss_pred CCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 455544444433333332 67899999999999999998763 135899999999999999999999998
Q ss_pred C--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004775 137 A--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (731)
Q Consensus 137 ~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ 214 (731)
. ++.+.+.|+..+... ......+||+|++|||+.+.+. .........+
T Consensus 261 ~~~~v~~~~~D~~~~l~~-----------------~~~~~~~fD~Ii~DPP~~~~~~-------------~~~~~~~~~~ 310 (385)
T 2b78_A 261 DMANHQLVVMDVFDYFKY-----------------ARRHHLTYDIIIIDPPSFARNK-------------KEVFSVSKDY 310 (385)
T ss_dssp CCTTEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCCCC------------------CCCCHHHHH
T ss_pred CccceEEEECCHHHHHHH-----------------HHHhCCCccEEEECCCCCCCCh-------------hhHHHHHHHH
Confidence 6 899999988663110 0011247999999999864320 1122344566
Q ss_pred HHHHHHHHhhccCCCEEEEEeCCCCC--cCcHHHHHHHHHHCCCc
Q 004775 215 VQIAMRGISLLKVGGRIVYSTCSMNP--VENEAVVAEILRKCEGS 257 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~LVYSTCSl~p--~ENEaVV~~~L~~~~g~ 257 (731)
.+++..+.++|+|||+|++|+|+-.. .+...++..++.+.+..
T Consensus 311 ~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 311 HKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999664 44557777777766543
No 17
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.45 E-value=1.2e-13 Score=148.60 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=112.4
Q ss_pred ccCcEEecCccccchhhhcC-CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004775 56 EIGNITRQEAVSMVPPLFLD-VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd-~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl 134 (731)
.+|.+..|..........+. ..++.+|||+|||+|+.+..++.. ...|+|+|+|+..++.+++|++.+
T Consensus 130 ~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~-----------ga~V~~VD~s~~al~~a~~n~~~~ 198 (332)
T 2igt_A 130 HVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA-----------GAEVTHVDASKKAIGWAKENQVLA 198 (332)
T ss_dssp CCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT-----------TCEEEEECSCHHHHHHHHHHHHHH
T ss_pred cceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHc
Confidence 34666666655433333333 457889999999999999998763 138999999999999999999999
Q ss_pred CCCc--eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHH
Q 004775 135 CTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS 212 (731)
Q Consensus 135 g~~n--i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~ 212 (731)
+..+ +.+.+.|+..+... ......+||+|++||||.+.+.- ........
T Consensus 199 gl~~~~v~~i~~D~~~~l~~-----------------~~~~~~~fD~Ii~dPP~~~~~~~------------~~~~~~~~ 249 (332)
T 2igt_A 199 GLEQAPIRWICEDAMKFIQR-----------------EERRGSTYDIILTDPPKFGRGTH------------GEVWQLFD 249 (332)
T ss_dssp TCTTSCEEEECSCHHHHHHH-----------------HHHHTCCBSEEEECCCSEEECTT------------CCEEEHHH
T ss_pred CCCccceEEEECcHHHHHHH-----------------HHhcCCCceEEEECCccccCCch------------HHHHHHHH
Confidence 8864 88998888764210 00012579999999998765521 01123345
Q ss_pred HHHHHHHHHHhhccCCCE-EEEEeCCCCCc--CcHHHHHHHHHHCCCcEE
Q 004775 213 LQVQIAMRGISLLKVGGR-IVYSTCSMNPV--ENEAVVAEILRKCEGSVE 259 (731)
Q Consensus 213 lQ~~IL~rAl~lLKpGG~-LVYSTCSl~p~--ENEaVV~~~L~~~~g~~e 259 (731)
.+.+++..+.++|||||. ++.++|+.... +-+.++..++++.+..++
T Consensus 250 ~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 250 HLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 567899999999999999 55566775432 223444444445554444
No 18
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.42 E-value=1.5e-12 Score=133.94 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=105.9
Q ss_pred ccchhhhcCCC-CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEec
Q 004775 67 SMVPPLFLDVQ-PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNH 144 (731)
Q Consensus 67 Smlp~llLd~~-pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~ 144 (731)
+++...++.+. ++.+|||+|||+|..+..+++.. .+.|+|+|+++..+..+++++++++.. ++.+.+.
T Consensus 37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~----------~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~ 106 (259)
T 3lpm_A 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT----------KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY 106 (259)
T ss_dssp HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC----------CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc----------CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC
Confidence 55666777888 99999999999999999887651 349999999999999999999999876 5999999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCC-CccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD-GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd-Gtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
|+..++.. ....+||.|++|||+... +.-..+++..+.. ...........++..+.+
T Consensus 107 D~~~~~~~-------------------~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~l~~~~~ 164 (259)
T 3lpm_A 107 DLKKITDL-------------------IPKERADIVTCNPPYFATPDTSLKNTNEHFRI---ARHEVMCTLEDTIRVAAS 164 (259)
T ss_dssp CGGGGGGT-------------------SCTTCEEEEEECCCC--------------------------HHHHHHHHHHHH
T ss_pred cHHHhhhh-------------------hccCCccEEEECCCCCCCccccCCCCchHHHh---hhccccCCHHHHHHHHHH
Confidence 98775321 113689999999999766 2223333321111 011112334578999999
Q ss_pred hccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 224 LLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 224 lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+|||||++++. .+.+...-+..++++++
T Consensus 165 ~LkpgG~l~~~----~~~~~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 165 LLKQGGKANFV----HRPERLLDIIDIMRKYR 192 (259)
T ss_dssp HEEEEEEEEEE----ECTTTHHHHHHHHHHTT
T ss_pred HccCCcEEEEE----EcHHHHHHHHHHHHHCC
Confidence 99999999995 34456666677787765
No 19
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.38 E-value=4.3e-12 Score=125.12 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=108.5
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
...++++++.+|||+|||+|..+..++... +.+.|+|+|+++.+++.+++++++.+..++.+...|+....
T Consensus 33 l~~l~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 33 LSKLRLQDDLVMWDIGAGSASVSIEASNLM---------PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL 103 (204)
T ss_dssp HHHTTCCTTCEEEEETCTTCHHHHHHHHHC---------TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred HHHcCCCCCCEEEEECCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence 345678899999999999999999998873 35899999999999999999999999888999988875432
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||.|+++.+.. ...+++..+.++|||||+
T Consensus 104 ~---------------------~~~~~D~i~~~~~~~-------------------------~~~~~l~~~~~~LkpgG~ 137 (204)
T 3e05_A 104 D---------------------DLPDPDRVFIGGSGG-------------------------MLEEIIDAVDRRLKSEGV 137 (204)
T ss_dssp T---------------------TSCCCSEEEESCCTT-------------------------CHHHHHHHHHHHCCTTCE
T ss_pred h---------------------cCCCCCEEEECCCCc-------------------------CHHHHHHHHHHhcCCCeE
Confidence 1 114699999976531 123678999999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+++++++. ++...+...|++.+..++++.+
T Consensus 138 l~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 167 (204)
T 3e05_A 138 IVLNAVTL---DTLTKAVEFLEDHGYMVEVACV 167 (204)
T ss_dssp EEEEECBH---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEeccc---ccHHHHHHHHHHCCCceeEEEE
Confidence 99998876 6778888889988755555544
No 20
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.37 E-value=2.4e-12 Score=134.50 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=105.1
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+++|.+|||+|||+|+.+..++... ...|+|+|+++..++.+++|++.++..+ +.+.+.|+..++.
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~----------~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--- 189 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG----------KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT----------CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---
Confidence 4689999999999999999998762 1279999999999999999999999875 8899999877542
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...||+|++|+|++. .+++..+.++|||||+++++
T Consensus 190 -------------------~~~fD~Vi~~~p~~~--------------------------~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 190 -------------------ENIADRILMGYVVRT--------------------------HEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp -------------------CSCEEEEEECCCSSG--------------------------GGGHHHHHHHEEEEEEEEEE
T ss_pred -------------------cCCccEEEECCchhH--------------------------HHHHHHHHHHCCCCeEEEEE
Confidence 267999999999432 23577889999999999999
Q ss_pred eCCC---CCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 TCSM---NPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 TCSl---~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+|+- .+.+..+.+..++++.+..++.+..
T Consensus 225 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~~ 256 (278)
T 2frn_A 225 NTVPEKLMPREPFETFKRITKEYGYDVEKLNE 256 (278)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred EeeccccccccHHHHHHHHHHHcCCeeEEeee
Confidence 9984 3455667778888888866666443
No 21
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.37 E-value=1.9e-13 Score=149.77 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=96.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc---------------CCCceEEE
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM---------------CTANLIVT 142 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl---------------g~~ni~vt 142 (731)
++.+|||+|||+|.+++.+|..++ ...|+|||+++.+++++++|++++ +..++.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~---------~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~ 117 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP---------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVIN 117 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS---------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEE
T ss_pred CCCEEEECCCchhHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEE
Confidence 688999999999999999998753 357999999999999999999999 87778899
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004775 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (731)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (731)
+.|+..+.. .....||+|++||||+. ..+|..|+
T Consensus 118 ~~Da~~~~~--------------------~~~~~fD~I~lDP~~~~--------------------------~~~l~~a~ 151 (378)
T 2dul_A 118 HDDANRLMA--------------------ERHRYFHFIDLDPFGSP--------------------------MEFLDTAL 151 (378)
T ss_dssp ESCHHHHHH--------------------HSTTCEEEEEECCSSCC--------------------------HHHHHHHH
T ss_pred cCcHHHHHH--------------------hccCCCCEEEeCCCCCH--------------------------HHHHHHHH
Confidence 998876421 00247999999999762 25788899
Q ss_pred hhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
++||+|| ++|.||+-....+.......+++++
T Consensus 152 ~~lk~gG-~l~vt~td~~~l~~~~~~~~~~~yg 183 (378)
T 2dul_A 152 RSAKRRG-ILGVTATDGAPLCGAHPRACLRKYL 183 (378)
T ss_dssp HHEEEEE-EEEEEECCHHHHTTSSHHHHHHHHS
T ss_pred HhcCCCC-EEEEEeecchhhccccHHHHHHHcc
Confidence 9999999 7888997544333333455666665
No 22
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.35 E-value=4.3e-12 Score=126.48 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=105.2
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF 149 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~f 149 (731)
...+++.++.+|||+|||+|..+..++.. .+.|+|+|+++.+++.+++++++++.+ ++.+...|+...
T Consensus 48 l~~l~~~~~~~vLDlGcG~G~~~~~la~~-----------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 48 LAALAPRRGELLWDIGGGSGSVSVEWCLA-----------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHCCCTTCEEEEETCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHhcCCCCCCEEEEecCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 34567889999999999999999999875 368999999999999999999999988 899999987662
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
.. ....||.|+++... .+. ++..+.++|||||
T Consensus 117 ~~---------------------~~~~~D~v~~~~~~--------------------------~~~-~l~~~~~~LkpgG 148 (204)
T 3njr_A 117 LA---------------------DLPLPEAVFIGGGG--------------------------SQA-LYDRLWEWLAPGT 148 (204)
T ss_dssp GT---------------------TSCCCSEEEECSCC--------------------------CHH-HHHHHHHHSCTTC
T ss_pred cc---------------------cCCCCCEEEECCcc--------------------------cHH-HHHHHHHhcCCCc
Confidence 11 11469999986520 012 7888999999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+|++++|+. ++...+.++|++.+..+.-+.+
T Consensus 149 ~lv~~~~~~---~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 149 RIVANAVTL---ESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp EEEEEECSH---HHHHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEEecCc---ccHHHHHHHHHhCCCcEEEEEe
Confidence 999999987 8888889999988744444433
No 23
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.35 E-value=5.2e-12 Score=132.96 Aligned_cols=130 Identities=23% Similarity=0.328 Sum_probs=102.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+++|++|||||||.|++++.+|.. +...|+|+|+|+..++.|++|++++++.+ +.+.+.|+..|+.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~----------g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--- 189 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY----------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH----------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh----------cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---
Confidence 578999999999999999998865 24689999999999999999999999865 8899999987642
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...||+|++|+|++.. ..|..|+++||+||.|.|.
T Consensus 190 -------------------~~~~D~Vi~~~p~~~~--------------------------~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 190 -------------------ENIADRILMGYVVRTH--------------------------EFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp -------------------CSCEEEEEECCCSSGG--------------------------GGHHHHHHHEEEEEEEEEE
T ss_pred -------------------ccCCCEEEECCCCcHH--------------------------HHHHHHHHHcCCCCEEEEE
Confidence 2579999999996542 1356688999999998653
Q ss_pred -eC--CCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 -TC--SMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 -TC--Sl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
.+ ...+.+-.+.+..+.+..+..++.+..
T Consensus 225 ~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~ 256 (278)
T 3k6r_A 225 NTVPEKLMPREPFETFKRITKEYGYDVEKLNE 256 (278)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred eeecccccchhHHHHHHHHHHHcCCcEEEEEE
Confidence 32 233445567778888888766666554
No 24
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.34 E-value=2.8e-12 Score=128.21 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=92.3
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHF 149 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-----~~ni~vt~~Da~~f 149 (731)
.++++++|||+|||+|.+|.++++.++. .+.|+++|+++.++..+++++.+++ ..++.+...|+...
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGC--------TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCT--------TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 4789999999999999999999988642 5799999999999999999998865 46788888887642
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+ .....||+|+++.+|. .++..+.++|||||
T Consensus 146 ~---------------------~~~~~fD~i~~~~~~~----------------------------~~~~~~~~~LkpgG 176 (226)
T 1i1n_A 146 Y---------------------AEEAPYDAIHVGAAAP----------------------------VVPQALIDQLKPGG 176 (226)
T ss_dssp C---------------------GGGCCEEEEEECSBBS----------------------------SCCHHHHHTEEEEE
T ss_pred c---------------------ccCCCcCEEEECCchH----------------------------HHHHHHHHhcCCCc
Confidence 1 1125799999998872 12346678999999
Q ss_pred EEEEEeCCCCCcCcHHH
Q 004775 230 RIVYSTCSMNPVENEAV 246 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaV 246 (731)
+||+++|+..+.++..+
T Consensus 177 ~lv~~~~~~~~~~~~~~ 193 (226)
T 1i1n_A 177 RLILPVGPAGGNQMLEQ 193 (226)
T ss_dssp EEEEEESCTTSCEEEEE
T ss_pred EEEEEEecCCCceEEEE
Confidence 99999999877666543
No 25
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.34 E-value=1.6e-11 Score=122.89 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred CCCCCCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
.++++.+|||+||| +|..+..++... .+.|+|+|+|+..+..+++++++++. ++.+...|+..+..+
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~- 119 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF----------NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGV- 119 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH----------CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTT-
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhc-
Confidence 45789999999999 999999998874 26899999999999999999999988 888888887543221
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||+|++|+|+...+.-...... ..|.... ..+ ....+++..+.++|||||++++
T Consensus 120 -------------------~~~~fD~I~~npp~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 120 -------------------VEGTFDVIFSAPPYYDKPLGRVLTER-EAIGGGK-YGE-EFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp -------------------CCSCEEEEEECCCCC----------------CCS-SSC-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred -------------------ccCceeEEEECCCCcCCccccccChh-hhhccCc-cch-HHHHHHHHHHHHHhCCCeEEEE
Confidence 12679999999998766542211111 1111111 111 3336799999999999999998
Q ss_pred EeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 234 STCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
.+++- .+...-+.+.+++.+..++.+..
T Consensus 178 ~~~~~--~~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 178 YLPDK--EKLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp EEESC--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred Eeccc--HhHHHHHHHHHHHcCCceEEEEe
Confidence 75442 14456667778887755555443
No 26
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.34 E-value=2.9e-12 Score=138.06 Aligned_cols=132 Identities=25% Similarity=0.331 Sum_probs=106.3
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.++.++++..|||+|||+|..+..++.+.+ +.+.|+|+|+|+..++.+++|+++.|..++.+.+.|+..++.
T Consensus 197 ~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~--------~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 197 RLADARPGMRVLDPFTGSGTIALEAASTLG--------PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp HHTTCCTTCCEEESSCTTSHHHHHHHHHHC--------TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred HHhCCCCCCEEEeCCCCcCHHHHHHHHhhC--------CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 445778999999999999999999988752 247899999999999999999999998889999999887642
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
. ...||.|++||||.- .......+..++.+++..+.++|||||++
T Consensus 269 ~---------------------~~~~D~Ii~npPyg~--------------r~~~~~~~~~~~~~~~~~~~~~LkpgG~l 313 (354)
T 3tma_A 269 F---------------------FPEVDRILANPPHGL--------------RLGRKEGLFHLYWDFLRGALALLPPGGRV 313 (354)
T ss_dssp T---------------------CCCCSEEEECCCSCC------------------CHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred c---------------------cCCCCEEEECCCCcC--------------ccCCcccHHHHHHHHHHHHHHhcCCCcEE
Confidence 1 145899999999731 11122345678889999999999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHH
Q 004775 232 VYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~ 252 (731)
++.|| |+..+..+++
T Consensus 314 ~i~t~------~~~~~~~~~~ 328 (354)
T 3tma_A 314 ALLTL------RPALLKRALP 328 (354)
T ss_dssp EEEES------CHHHHHHHCC
T ss_pred EEEeC------CHHHHHHHhh
Confidence 99998 4566666665
No 27
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.33 E-value=1e-12 Score=144.51 Aligned_cols=126 Identities=18% Similarity=0.087 Sum_probs=97.6
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n--i~vt~~Da~~fp~~~~ 154 (731)
++|.+|||+|||+|++++.+|..+.+ .+.|+|||+++.+++++++|++++++.+ +.+++.|+..+...
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~g--------a~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~-- 120 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSC--------VEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK-- 120 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSC--------EEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--
Confidence 67999999999999999999886432 4799999999999999999999999876 89999998764210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||+|++||+|+. ..++..|+++|++|| ++|+
T Consensus 121 -----------------~~~~~fD~V~lDP~g~~--------------------------~~~l~~a~~~Lk~gG-ll~~ 156 (392)
T 3axs_A 121 -----------------EWGFGFDYVDLDPFGTP--------------------------VPFIESVALSMKRGG-ILSL 156 (392)
T ss_dssp -----------------CCSSCEEEEEECCSSCC--------------------------HHHHHHHHHHEEEEE-EEEE
T ss_pred -----------------hhCCCCcEEEECCCcCH--------------------------HHHHHHHHHHhCCCC-EEEE
Confidence 00247999999997431 247888999999988 7889
Q ss_pred eCCCCCcCcHHHHHHHHHHCCC
Q 004775 235 TCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g 256 (731)
||+-........+...+++++.
T Consensus 157 t~t~~~~l~g~~~~~~~rkYg~ 178 (392)
T 3axs_A 157 TATDTAPLSGTYPKTCMRRYMA 178 (392)
T ss_dssp EECCHHHHTTSSHHHHHHHHSS
T ss_pred EecchhhhccccHHHHHHHhCC
Confidence 9976443222244566777763
No 28
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.33 E-value=6.9e-12 Score=130.15 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=106.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++..+ +...|+|+|+|+..+..+++++++++..++.+...|+....
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~---------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~------ 172 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASER---------PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL------ 172 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC---------TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG------
T ss_pred cCCCEEEEecCCccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc------
Confidence 578899999999999999998764 35799999999999999999999999888888888765421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccc----cchHHHHHHHHHHHHhhccCCCEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~----~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++++||.+.+...-.++++. +.|... ........+++..+.++|||||+++
T Consensus 173 ----------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~-~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~ 235 (276)
T 2b3t_A 173 ----------------AGQQFAMIVSNPPYIDEQDPHLQQGDVR-FEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 235 (276)
T ss_dssp ----------------TTCCEEEEEECCCCBCTTCHHHHSSGGG-SSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----------------ccCCccEEEECCCCCCccccccChhhhh-cCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 1257999999999998754211112221 222111 1122456789999999999999999
Q ss_pred EEeCCCCCcCcHHHHHHHHHHCC
Q 004775 233 YSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
+..+. .+...+.++|++.|
T Consensus 236 ~~~~~----~~~~~~~~~l~~~G 254 (276)
T 2b3t_A 236 LEHGW----QQGEAVRQAFILAG 254 (276)
T ss_dssp EECCS----SCHHHHHHHHHHTT
T ss_pred EEECc----hHHHHHHHHHHHCC
Confidence 98543 45566778888765
No 29
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.32 E-value=5.3e-12 Score=131.13 Aligned_cols=144 Identities=13% Similarity=0.203 Sum_probs=101.5
Q ss_pred cEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC
Q 004775 59 NITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA 137 (731)
Q Consensus 59 ~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~ 137 (731)
....++....+....++++++.+|||+|||+|..+..+++.+. +.+.|+++|+++.+++.+++++++. |..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~g~~ 162 (275)
T 1yb2_A 91 TQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALN--------GKGTLTVVERDEDNLKKAMDNLSEFYDIG 162 (275)
T ss_dssp ---------------CCCCTTCEEEEECCTTSHHHHHHHHHHT--------TSSEEEEECSCHHHHHHHHHHHHTTSCCT
T ss_pred ccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 3344444445556677899999999999999999999998764 2579999999999999999999988 878
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004775 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (731)
Q Consensus 138 ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I 217 (731)
++.+...|+... .....||+|++|+| ++ .++
T Consensus 163 ~v~~~~~d~~~~----------------------~~~~~fD~Vi~~~~---------~~------------------~~~ 193 (275)
T 1yb2_A 163 NVRTSRSDIADF----------------------ISDQMYDAVIADIP---------DP------------------WNH 193 (275)
T ss_dssp TEEEECSCTTTC----------------------CCSCCEEEEEECCS---------CG------------------GGS
T ss_pred cEEEEECchhcc----------------------CcCCCccEEEEcCc---------CH------------------HHH
Confidence 888888887651 01257999999876 11 146
Q ss_pred HHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 218 AMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 218 L~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
|..+.++|||||+|++++|+.. ...-+...|++.+ |..+++.
T Consensus 194 l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~~l~~~G--f~~~~~~ 235 (275)
T 1yb2_A 194 VQKIASMMKPGSVATFYLPNFD---QSEKTVLSLSASG--MHHLETV 235 (275)
T ss_dssp HHHHHHTEEEEEEEEEEESSHH---HHHHHHHHSGGGT--EEEEEEE
T ss_pred HHHHHHHcCCCCEEEEEeCCHH---HHHHHHHHHHHCC--CeEEEEE
Confidence 8888999999999999998762 3334445555544 6666653
No 30
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.31 E-value=1.8e-11 Score=118.50 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=93.6
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+++|.+|||+|||+|..|..++.. .+.|+|+|+|+..++.+++++++.+..++.+.+.++..++..
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-----------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~-- 85 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-----------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY-- 85 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-----------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT--
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh--
Confidence 4578999999999999999998765 379999999999999999999999888888887665553211
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....||.|+++.+.-..+ ..........+.++|..+.++|||||+++.+
T Consensus 86 ------------------~~~~fD~v~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 86 ------------------VREPIRAAIFNLGYLPSA-------------DKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp ------------------CCSCEEEEEEEEC------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------ccCCcCEEEEeCCCCCCc-------------chhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 125799999875421110 0111223345677899999999999999988
Q ss_pred eCCCCCc---CcHHHHHHHHHHC
Q 004775 235 TCSMNPV---ENEAVVAEILRKC 254 (731)
Q Consensus 235 TCSl~p~---ENEaVV~~~L~~~ 254 (731)
.++-++. |.+. +..++...
T Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~l 156 (185)
T 3mti_A 135 IYYGHDGGDMEKDA-VLEYVIGL 156 (185)
T ss_dssp EC------CHHHHH-HHHHHHHS
T ss_pred EeCCCCCCHHHHHH-HHHHHHhC
Confidence 8775543 3333 44555543
No 31
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.30 E-value=7.8e-12 Score=128.45 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=87.6
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
|+++||++|||++||+|..|.++|..++ |+|.|+|+|+++.++..|++++++. +|+..+..|+......
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG--------~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~- 141 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIG--------PRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKY- 141 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHC--------TTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGG-
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCcccc-
Confidence 5789999999999999999999999986 4799999999999999998877544 5788888777653211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
......||.|++|.+... ....++.++.++|||||+++.
T Consensus 142 -----------------~~~~~~vDvVf~d~~~~~------------------------~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 142 -----------------RHLVEGVDGLYADVAQPE------------------------QAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp -----------------TTTCCCEEEEEECCCCTT------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------------ccccceEEEEEEeccCCh------------------------hHHHHHHHHHHhccCCCEEEE
Confidence 122367999999987321 123578899999999999998
Q ss_pred Ee
Q 004775 234 ST 235 (731)
Q Consensus 234 ST 235 (731)
+.
T Consensus 181 ~i 182 (233)
T 4df3_A 181 AI 182 (233)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 32
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.29 E-value=2.2e-11 Score=119.03 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=101.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~ 152 (731)
+.++++.+|||+|||+|..+..++..++ +.+.|+|+|+++.++..++++++..+. .++.+.+.|+..++..
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 89 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLVG--------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY 89 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHHC--------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh
Confidence 3568899999999999999999998864 257999999999999999999999987 6899999998765421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCC--CCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPC--SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC--SGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
....||.|++|+|. .+++.+ ........+++..+.++|||||+
T Consensus 90 --------------------~~~~fD~v~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~Lk~gG~ 134 (197)
T 3eey_A 90 --------------------IDCPVKAVMFNLGYLPSGDHSI---------------STRPETTIQALSKAMELLVTGGI 134 (197)
T ss_dssp --------------------CCSCEEEEEEEESBCTTSCTTC---------------BCCHHHHHHHHHHHHHHEEEEEE
T ss_pred --------------------ccCCceEEEEcCCcccCccccc---------------ccCcccHHHHHHHHHHhCcCCCE
Confidence 12679999999864 111111 11222445689999999999999
Q ss_pred EEEEeCCCCCcC--cHHHHHHHHHH
Q 004775 231 IVYSTCSMNPVE--NEAVVAEILRK 253 (731)
Q Consensus 231 LVYSTCSl~p~E--NEaVV~~~L~~ 253 (731)
+++++++-++.. ....+..+++.
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T 3eey_A 135 ITVVIYYGGDTGFEEKEKVLEFLKG 159 (197)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTT
T ss_pred EEEEEccCCCCcHHHHHHHHHHHHh
Confidence 999876544332 23344555543
No 33
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.28 E-value=1.6e-11 Score=117.24 Aligned_cols=133 Identities=16% Similarity=0.231 Sum_probs=103.3
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc-C
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH-F 149 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~-f 149 (731)
..+.+.++.+|||+|||+|..+.+++..+ +.+.|+++|+++.++..++++++.++.. ++ +...|+.. +
T Consensus 19 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~ 88 (178)
T 3hm2_A 19 SALAPKPHETLWDIGGGSGSIAIEWLRST---------PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF 88 (178)
T ss_dssp HHHCCCTTEEEEEESTTTTHHHHHHHTTS---------SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred HHhcccCCCeEEEeCCCCCHHHHHHHHHC---------CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence 34577899999999999999999987763 3589999999999999999999998887 77 77676533 1
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+ .....||.|+++.+.. + ..++..+.++|||||
T Consensus 89 ~---------------------~~~~~~D~i~~~~~~~--------------~------------~~~l~~~~~~L~~gG 121 (178)
T 3hm2_A 89 D---------------------DVPDNPDVIFIGGGLT--------------A------------PGVFAAAWKRLPVGG 121 (178)
T ss_dssp G---------------------GCCSCCSEEEECC-TT--------------C------------TTHHHHHHHTCCTTC
T ss_pred h---------------------ccCCCCCEEEECCccc--------------H------------HHHHHHHHHhcCCCC
Confidence 1 1115799999855410 0 357888999999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
++++++++. ++...+..++++++..+.-+.++
T Consensus 122 ~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 122 RLVANAVTV---ESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp EEEEEECSH---HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred EEEEEeecc---ccHHHHHHHHHHcCCeeEEEEee
Confidence 999998877 77788888898887655555544
No 34
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.23 E-value=1e-11 Score=123.00 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=93.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+++|.+|||+|||||++|..+++. .+.|+|+|+++.. ..+++.+.+.|+...+....
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-----------~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~- 79 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-----------ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDD- 79 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-----------CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHH-
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-----------CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHH-
Confidence 468999999999999999998765 4799999998752 34678888888776431100
Q ss_pred CCCCCCCccccccccccc---cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 156 KNFSSASDKGIESESNMG---QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~---~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.. .... ...||+|++|+++...|... .+ ......++..+|..|.++|||||++|
T Consensus 80 -----------~~-~~~~~~~~~~~D~Vlsd~~~~~~g~~~--~d---------~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 80 -----------ID-RALREEGIEKVDDVVSDAMAKVSGIPS--RD---------HAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp -----------HH-HHHHHHTCSSEEEEEECCCCCCCSCHH--HH---------HHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------HH-HHhhcccCCcceEEecCCCcCCCCCcc--cC---------HHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 00 0000 03899999999988777521 11 12234577889999999999999998
Q ss_pred EEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 233 YSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
..+ ...++...+...|+.. |.-|.+
T Consensus 137 ~k~---~~~~~~~~~~~~l~~~---F~~v~~ 161 (191)
T 3dou_A 137 LKQ---FQGDMTNDFIAIWRKN---FSSYKI 161 (191)
T ss_dssp EEE---ECSTHHHHHHHHHGGG---EEEEEE
T ss_pred EEE---cCCCCHHHHHHHHHHh---cCEEEE
Confidence 554 3446666666667653 555554
No 35
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.23 E-value=6.9e-11 Score=128.60 Aligned_cols=143 Identities=12% Similarity=0.127 Sum_probs=105.0
Q ss_pred CcEEecCccccchhhh-cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 58 GNITRQEAVSMVPPLF-LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 58 G~i~~Qd~~Smlp~ll-Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
+....|+.++.+.... ....++.+|||+| |+|..+..++.. + +.+.|+++|+|+..+..++++++++|.
T Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~--------~~~~v~~vDi~~~~l~~a~~~~~~~g~ 220 (373)
T 2qm3_A 151 AYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-G--------LPKRIAVLDIDERLTKFIEKAANEIGY 220 (373)
T ss_dssp CCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-T--------CCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred eecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-C--------CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3444455544444332 2334789999999 999999888764 2 247999999999999999999999998
Q ss_pred CceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004775 137 ANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (731)
Q Consensus 137 ~ni~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (731)
.++.+...|+.. +|.. ....||+|++|+||+.. . ..
T Consensus 221 ~~v~~~~~D~~~~l~~~--------------------~~~~fD~Vi~~~p~~~~----------------------~-~~ 257 (373)
T 2qm3_A 221 EDIEIFTFDLRKPLPDY--------------------ALHKFDTFITDPPETLE----------------------A-IR 257 (373)
T ss_dssp CCEEEECCCTTSCCCTT--------------------TSSCBSEEEECCCSSHH----------------------H-HH
T ss_pred CCEEEEEChhhhhchhh--------------------ccCCccEEEECCCCchH----------------------H-HH
Confidence 789999998876 3310 12479999999997531 0 16
Q ss_pred HHHHHHHhhccCCCE-EEEEeCCCCCcCcH---HHHHHHHH-HCC
Q 004775 216 QIAMRGISLLKVGGR-IVYSTCSMNPVENE---AVVAEILR-KCE 255 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~-LVYSTCSl~p~ENE---aVV~~~L~-~~~ 255 (731)
.+|.++.++|||||+ ++|++|+ ..++. ..+..++. +.+
T Consensus 258 ~~l~~~~~~LkpgG~~~~~~~~~--~~~~~~~~~~~~~~l~~~~g 300 (373)
T 2qm3_A 258 AFVGRGIATLKGPRCAGYFGITR--RESSLDKWREIQKLLLNEFN 300 (373)
T ss_dssp HHHHHHHHTBCSTTCEEEEEECT--TTCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcccCCeEEEEEEec--CcCCHHHHHHHHHHHHHhcC
Confidence 789999999999995 5899887 23444 56677776 655
No 36
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.22 E-value=2.1e-11 Score=122.09 Aligned_cols=152 Identities=12% Similarity=0.136 Sum_probs=107.8
Q ss_pred EecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 004775 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NL 139 (731)
Q Consensus 61 ~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni 139 (731)
..+.....+...++...++.+|||+|||+|..|..+++.+. +.+.|+++|+++..+..+++++++.+.. ++
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v 112 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQ--------PGARLLTMEINPDCAAITQQMLNFAGLQDKV 112 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGE
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCC--------CCCEEEEEeCChHHHHHHHHHHHHcCCCCce
Confidence 34445555556666677889999999999999999988653 2589999999999999999999999985 59
Q ss_pred EEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH
Q 004775 140 IVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA 218 (731)
Q Consensus 140 ~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL 218 (731)
.+...|+..+ +.+. .......||.|++|.++.. .....+++
T Consensus 113 ~~~~~d~~~~l~~~~----------------~~~~~~~fD~V~~d~~~~~----------------------~~~~~~~~ 154 (221)
T 3u81_A 113 TILNGASQDLIPQLK----------------KKYDVDTLDMVFLDHWKDR----------------------YLPDTLLL 154 (221)
T ss_dssp EEEESCHHHHGGGTT----------------TTSCCCCCSEEEECSCGGG----------------------HHHHHHHH
T ss_pred EEEECCHHHHHHHHH----------------HhcCCCceEEEEEcCCccc----------------------chHHHHHH
Confidence 9999988653 2110 0011257999999875311 11223456
Q ss_pred HHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 219 MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 219 ~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
... ++|||||+||+..|... +.....+.++.++ .++...+
T Consensus 155 ~~~-~~LkpgG~lv~~~~~~~---~~~~~~~~l~~~~-~~~~~~~ 194 (221)
T 3u81_A 155 EKC-GLLRKGTVLLADNVIVP---GTPDFLAYVRGSS-SFECTHY 194 (221)
T ss_dssp HHT-TCCCTTCEEEESCCCCC---CCHHHHHHHHHCT-TEEEEEE
T ss_pred Hhc-cccCCCeEEEEeCCCCc---chHHHHHHHhhCC-CceEEEc
Confidence 665 99999999999998863 3344456666654 4555444
No 37
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.22 E-value=1.7e-11 Score=123.55 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=108.7
Q ss_pred hhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH
Q 004775 42 QTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (731)
Q Consensus 42 ~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~ 121 (731)
+.+..+..|.. ..|....|.....+...++.+.++.+|||+|||+|..+..+++.+ |.+.|+++|+++
T Consensus 21 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~---------~~~~v~~vD~~~ 88 (233)
T 2gpy_A 21 QYIEQMEREAH---EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL---------PEATIVSIERDE 88 (233)
T ss_dssp HHHHHHHHHHH---HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC---------TTCEEEEECCCH
T ss_pred HHHHHHHHHHH---HcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC---------CCCEEEEEECCH
Confidence 34445544422 346666777777777777788899999999999999999999875 247999999999
Q ss_pred HHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh
Q 004775 122 QRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR 200 (731)
Q Consensus 122 ~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~ 200 (731)
.++..+++++++.+.. ++.+...|+..+.. .......||+|++|++|+
T Consensus 89 ~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------------~~~~~~~fD~I~~~~~~~------------- 137 (233)
T 2gpy_A 89 RRYEEAHKHVKALGLESRIELLFGDALQLGE------------------KLELYPLFDVLFIDAAKG------------- 137 (233)
T ss_dssp HHHHHHHHHHHHTTCTTTEEEECSCGGGSHH------------------HHTTSCCEEEEEEEGGGS-------------
T ss_pred HHHHHHHHHHHHcCCCCcEEEEECCHHHHHH------------------hcccCCCccEEEECCCHH-------------
Confidence 9999999999999874 58888888765310 000025799999988753
Q ss_pred hcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 201 KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 201 ~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.+..++..+.++|||||+|+++++.+
T Consensus 138 ------------~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 138 ------------QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp ------------CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ------------HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 12467889999999999999997654
No 38
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.22 E-value=1.7e-10 Score=116.95 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=99.6
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEecccccC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQHF 149 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~ni~vt~~Da~~f 149 (731)
...+++.++.+|||+|||+|..+..++..++ |.+.|+++|+++.+++.++++++.. |..++.+...|+..+
T Consensus 89 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 89 VTLLDLAPGMRVLEAGTGSGGLTLFLARAVG--------EKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA 160 (258)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred HHHcCCCCCCEEEEECCCcCHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 3456789999999999999999999998874 2579999999999999999999888 877888888887664
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+ .....||.|++|+|. . ..+|.++.++|||||
T Consensus 161 ~---------------------~~~~~~D~v~~~~~~-----------~----------------~~~l~~~~~~L~~gG 192 (258)
T 2pwy_A 161 E---------------------LEEAAYDGVALDLME-----------P----------------WKVLEKAALALKPDR 192 (258)
T ss_dssp C---------------------CCTTCEEEEEEESSC-----------G----------------GGGHHHHHHHEEEEE
T ss_pred C---------------------CCCCCcCEEEECCcC-----------H----------------HHHHHHHHHhCCCCC
Confidence 2 112579999998762 1 136788899999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+++.++.+. +.-.-+...|++.+ |..+.+
T Consensus 193 ~l~~~~~~~---~~~~~~~~~l~~~g--f~~~~~ 221 (258)
T 2pwy_A 193 FLVAYLPNI---TQVLELVRAAEAHP--FRLERV 221 (258)
T ss_dssp EEEEEESCH---HHHHHHHHHHTTTT--EEEEEE
T ss_pred EEEEEeCCH---HHHHHHHHHHHHCC--CceEEE
Confidence 999887554 22233334454432 555554
No 39
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.21 E-value=4.7e-11 Score=121.50 Aligned_cols=127 Identities=19% Similarity=0.275 Sum_probs=100.0
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccc
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQ 147 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~ 147 (731)
.....+++.++.+|||+|||+|..+..++..++ |.+.|+++|+++.+++.++++++..+..+ +.+...|+.
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 155 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVG--------PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY 155 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhC--------CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh
Confidence 334467889999999999999999999999875 35899999999999999999999999876 888888876
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
.. .....||.|++|+|+. ..++.++.++|||
T Consensus 156 ~~----------------------~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~ 186 (255)
T 3mb5_A 156 EG----------------------IEEENVDHVILDLPQP---------------------------ERVVEHAAKALKP 186 (255)
T ss_dssp GC----------------------CCCCSEEEEEECSSCG---------------------------GGGHHHHHHHEEE
T ss_pred hc----------------------cCCCCcCEEEECCCCH---------------------------HHHHHHHHHHcCC
Confidence 42 1125699999998731 1357888999999
Q ss_pred CCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 228 GGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 228 GG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
||+++.++-+. +....+...|++++
T Consensus 187 gG~l~~~~~~~---~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 187 GGFFVAYTPCS---NQVMRLHEKLREFK 211 (255)
T ss_dssp EEEEEEEESSH---HHHHHHHHHHHHTG
T ss_pred CCEEEEEECCH---HHHHHHHHHHHHcC
Confidence 99998664332 44455667777765
No 40
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.20 E-value=1e-10 Score=121.24 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=102.1
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~f 149 (731)
...+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.+++.+++++++++. .++.+...|+..+
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVG--------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTT--------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 3456889999999999999999999998864 358999999999999999999999887 6788888877653
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+ ....||+|++|+|+. ..+|..+.++|+|||
T Consensus 177 --~--------------------~~~~~D~V~~~~~~~---------------------------~~~l~~~~~~L~pgG 207 (277)
T 1o54_A 177 --F--------------------DEKDVDALFLDVPDP---------------------------WNYIDKCWEALKGGG 207 (277)
T ss_dssp --C--------------------SCCSEEEEEECCSCG---------------------------GGTHHHHHHHEEEEE
T ss_pred --c--------------------cCCccCEEEECCcCH---------------------------HHHHHHHHHHcCCCC
Confidence 0 124799999998731 135788889999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecC
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s 264 (731)
+|++.+++. +.-.-+...|++.+ |..+.+.
T Consensus 208 ~l~~~~~~~---~~~~~~~~~l~~~g--f~~~~~~ 237 (277)
T 1o54_A 208 RFATVCPTT---NQVQETLKKLQELP--FIRIEVW 237 (277)
T ss_dssp EEEEEESSH---HHHHHHHHHHHHSS--EEEEEEE
T ss_pred EEEEEeCCH---HHHHHHHHHHHHCC--CceeEEE
Confidence 999988765 23334455666643 6666553
No 41
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.19 E-value=9.9e-11 Score=117.47 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=93.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+++|++|||+|||+|..|.+++..++ .|.|+|+|+|+.++..+.+.+++. .|+.+...|+......
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~---------~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~- 120 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD---------EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY- 120 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT---------TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC---------CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhh-
Confidence 4678999999999999999999998753 479999999999988777777654 4677777776552100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH-HHHHHHHhhccCCCEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV-QIAMRGISLLKVGGRIV 232 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~-~IL~rAl~lLKpGG~LV 232 (731)
... ...||.|++|++ .+ .|. .++..+.++|||||+++
T Consensus 121 ----------------~~~-~~~fD~V~~~~~---------~~----------------~~~~~~l~~~~r~LkpgG~l~ 158 (210)
T 1nt2_A 121 ----------------SGI-VEKVDLIYQDIA---------QK----------------NQIEILKANAEFFLKEKGEVV 158 (210)
T ss_dssp ----------------TTT-CCCEEEEEECCC---------ST----------------THHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------ccc-ccceeEEEEecc---------Ch----------------hHHHHHHHHHHHHhCCCCEEE
Confidence 001 257999999742 01 122 34888999999999999
Q ss_pred EEe---CCCCCcCcHHHHHHH---HHHCCCcEEEEecCc
Q 004775 233 YST---CSMNPVENEAVVAEI---LRKCEGSVELVDVSN 265 (731)
Q Consensus 233 YST---CSl~p~ENEaVV~~~---L~~~~g~~elvd~s~ 265 (731)
++. |.-.....+++.... |++. |++++...
T Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~~l~~~---f~~~~~~~ 194 (210)
T 1nt2_A 159 IMVKARSIDSTAEPEEVFKSVLKEMEGD---FKIVKHGS 194 (210)
T ss_dssp EEEEHHHHCTTSCHHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred EEEecCCccccCCHHHHHHHHHHHHHhh---cEEeeeec
Confidence 984 222233445554222 5543 66666543
No 42
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.18 E-value=8e-11 Score=126.43 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=108.3
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
++.++.+|||.|||+|+.+..+++.+.... .....|+|+|+++..+.+++.++...|. ++.+.+.|+....
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~----~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---- 197 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKG----DVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---- 197 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTS----SCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC----
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhc----CCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc----
Confidence 566789999999999999999998875310 0127899999999999999999988877 5677777764311
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....||+|+++||+ |.+. ..+.+.+|.+....+....+..++.+++++||+||++++.
T Consensus 198 ------------------~~~~fD~Ii~NPPf---g~~~-~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 198 ------------------LVDPVDVVISDLPV---GYYP-DDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp ------------------CCCCEEEEEEECCC---SEES-CHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ------------------ccCCccEEEECCCC---CCcC-chhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 12579999999997 3332 3444555655433344556778999999999999999988
Q ss_pred eC-CCCCcCcHHHHHHHHHHC
Q 004775 235 TC-SMNPVENEAVVAEILRKC 254 (731)
Q Consensus 235 TC-Sl~p~ENEaVV~~~L~~~ 254 (731)
++ ++.....+.-+...|.+.
T Consensus 256 ~p~~~~~~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 256 VPDAMFGTSDFAKVDKFIKKN 276 (344)
T ss_dssp EEGGGGGSTTHHHHHHHHHHH
T ss_pred ECchhcCCchHHHHHHHHHhC
Confidence 63 333344556666666554
No 43
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.18 E-value=1.9e-11 Score=119.65 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++... +.+.|+|+|+++..+..+++++...+. ++.+...|+.....
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----- 93 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC---------PGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLI----- 93 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC---------TTEEEEEEECC--------------------CCHHHHHHHHH-----
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhh-----
Confidence 688999999999999999998873 357999999999999999999888776 67777776654100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccc----cchHHHHHHHHHHHHhhccCCCEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~----~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
........||.|++|+|+...+.+...+.....+.+... ..-.....+++..+.++|||||+++
T Consensus 94 ------------~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 161 (215)
T 4dzr_A 94 ------------ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGV 161 (215)
T ss_dssp ------------HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEE
T ss_pred ------------hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEE
Confidence 000012689999999999877765443322222221111 1112334678999999999999955
Q ss_pred EEeCCCCCcCcHHHHHHHHH--HCC
Q 004775 233 YSTCSMNPVENEAVVAEILR--KCE 255 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~--~~~ 255 (731)
+.++.. .....+..+++ +.+
T Consensus 162 ~~~~~~---~~~~~~~~~l~~~~~g 183 (215)
T 4dzr_A 162 FLEVGH---NQADEVARLFAPWRER 183 (215)
T ss_dssp EEECTT---SCHHHHHHHTGGGGGG
T ss_pred EEEECC---ccHHHHHHHHHHhhcC
Confidence 555543 55666677777 544
No 44
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=3.8e-11 Score=123.10 Aligned_cols=124 Identities=10% Similarity=0.107 Sum_probs=96.5
Q ss_pred CccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEE
Q 004775 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVT 142 (731)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt 142 (731)
.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|+++.++..+++++++.+.. ++.+.
T Consensus 49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~ 120 (248)
T 3tfw_A 49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPA--------DGQLLTLEADAHHAQVARENLQLAGVDQRVTLR 120 (248)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 444445555556778999999999999999999887532 589999999999999999999999986 79999
Q ss_pred ecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 143 NHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 143 ~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
..|+..+ +.. .....||+|++|+++.. ....+..+
T Consensus 121 ~~d~~~~l~~~-------------------~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~ 156 (248)
T 3tfw_A 121 EGPALQSLESL-------------------GECPAFDLIFIDADKPN-------------------------NPHYLRWA 156 (248)
T ss_dssp ESCHHHHHHTC-------------------CSCCCCSEEEECSCGGG-------------------------HHHHHHHH
T ss_pred EcCHHHHHHhc-------------------CCCCCeEEEEECCchHH-------------------------HHHHHHHH
Confidence 9988653 211 11247999999886211 12468888
Q ss_pred HhhccCCCEEEEEeCCCC
Q 004775 222 ISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 222 l~lLKpGG~LVYSTCSl~ 239 (731)
.++|||||+||+..+.+.
T Consensus 157 ~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 157 LRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp HHTCCTTCEEEEECCSGG
T ss_pred HHhcCCCeEEEEeCCCcC
Confidence 999999999999887764
No 45
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1.7e-10 Score=112.43 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=88.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. +.+.|+|+|+|+..++.+++++++++..++.+.+.|+..++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----- 107 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR----------GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA----- 107 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT----------TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHH-----
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC----------CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHh-----
Confidence 47889999999999999887663 246899999999999999999999998889999999876431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh--hccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS--LLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~--lLKpGG~LVYS 234 (731)
......||.|++|+|.... .....+++....+ +|||||+++..
T Consensus 108 --------------~~~~~~fD~i~~~~p~~~~---------------------~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 108 --------------AGTTSPVDLVLADPPYNVD---------------------SADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp --------------HCCSSCCSEEEECCCTTSC---------------------HHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred --------------hccCCCccEEEECCCCCcc---------------------hhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 0113689999999984221 1233456777777 99999999998
Q ss_pred eCCC
Q 004775 235 TCSM 238 (731)
Q Consensus 235 TCSl 238 (731)
+.+-
T Consensus 153 ~~~~ 156 (189)
T 3p9n_A 153 RATT 156 (189)
T ss_dssp EETT
T ss_pred ecCC
Confidence 7654
No 46
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.16 E-value=7.9e-11 Score=122.74 Aligned_cols=108 Identities=20% Similarity=0.165 Sum_probs=88.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
..+.++++|||+|||+|..|..+|.... .+.|+|+|+++..++.+++|++.++..++.+.+.|+..++.
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~---------~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-- 183 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK---------PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-- 183 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC---------CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC--
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc--
Confidence 3467899999999999999999988732 46999999999999999999999999899999999877521
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...||+|++|+|. +. .+++..++++|||||++++
T Consensus 184 --------------------~~~~D~Vi~d~p~---~~-----------------------~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 184 --------------------KDVADRVIMGYVH---KT-----------------------HKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp --------------------TTCEEEEEECCCS---SG-----------------------GGGHHHHHHHEEEEEEEEE
T ss_pred --------------------cCCceEEEECCcc---cH-----------------------HHHHHHHHHHcCCCCEEEE
Confidence 2579999999984 10 1357788899999998775
Q ss_pred EeCCCC
Q 004775 234 STCSMN 239 (731)
Q Consensus 234 STCSl~ 239 (731)
| |...
T Consensus 218 s-~~~~ 222 (272)
T 3a27_A 218 H-ETVA 222 (272)
T ss_dssp E-EEEE
T ss_pred E-EcCc
Confidence 5 5544
No 47
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.15 E-value=8.8e-11 Score=123.40 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=98.6
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~ 155 (731)
.++.+|||+|||+|..+..++.. . ...|+|+|+|+..+..+++|+++++..+ +.+.+.|+....
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~---------~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----- 186 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-S---------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----- 186 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-S---------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-----
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-C---------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-----
Confidence 47789999999999999999876 3 4799999999999999999999999875 888888875520
Q ss_pred CCCCCCCccccccccccccccc---cEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH-hhccCCCEE
Q 004775 156 KNFSSASDKGIESESNMGQLLF---DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI-SLLKVGGRI 231 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~F---DrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl-~lLKpGG~L 231 (731)
...| |.|+++|||.+.+. ...+++. |.+..+..-......++++.+ +.|+|||+|
T Consensus 187 ------------------~~~f~~~D~IvsnPPyi~~~~-~l~~~v~--~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l 245 (284)
T 1nv8_A 187 ------------------KEKFASIEMILSNPPYVKSSA-HLPKDVL--FEPPEALFGGEDGLDFYREFFGRYDTSGKIV 245 (284)
T ss_dssp ------------------GGGTTTCCEEEECCCCBCGGG-SCTTSCC--CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ------------------ccccCCCCEEEEcCCCCCccc-ccChhhc--cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEE
Confidence 1357 99999999998876 3333332 332221110111125788888 999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHHH
Q 004775 232 VYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~ 253 (731)
++. +...+.++| .++++.
T Consensus 246 ~~e---~~~~q~~~v-~~~~~~ 263 (284)
T 1nv8_A 246 LME---IGEDQVEEL-KKIVSD 263 (284)
T ss_dssp EEE---CCTTCHHHH-TTTSTT
T ss_pred EEE---ECchHHHHH-HHHHHh
Confidence 974 344555555 444443
No 48
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.15 E-value=7.9e-11 Score=117.44 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=95.6
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIV 141 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~v 141 (731)
+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|+++.++..+++++++.+..+ +.+
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 114 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSS--------GGRVVTLEASEKHADIARSNIERANLNDRVEV 114 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCS--------SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 3444445555566778999999999999999999887531 5799999999999999999999999865 889
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
...|+..+... + .......||.|++|++++ ....++..+
T Consensus 115 ~~~d~~~~~~~-~---------------~~~~~~~fD~v~~d~~~~-------------------------~~~~~l~~~ 153 (223)
T 3duw_A 115 RTGLALDSLQQ-I---------------ENEKYEPFDFIFIDADKQ-------------------------NNPAYFEWA 153 (223)
T ss_dssp EESCHHHHHHH-H---------------HHTTCCCCSEEEECSCGG-------------------------GHHHHHHHH
T ss_pred EEcCHHHHHHH-H---------------HhcCCCCcCEEEEcCCcH-------------------------HHHHHHHHH
Confidence 98887653110 0 000014699999998732 113578889
Q ss_pred HhhccCCCEEEEEeCCC
Q 004775 222 ISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 222 l~lLKpGG~LVYSTCSl 238 (731)
.++|||||+|++..+.+
T Consensus 154 ~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 154 LKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp HHTCCTTCEEEEESCSG
T ss_pred HHhcCCCcEEEEeCCCc
Confidence 99999999999876654
No 49
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.13 E-value=8.8e-11 Score=118.50 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=77.1
Q ss_pred cccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEec
Q 004775 66 VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNH 144 (731)
Q Consensus 66 ~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~ 144 (731)
...+...+....++.+|||+|||+|..+..++.. .+.|+|+|+|+.+++.+++++++++. .++.+.+.
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT-----------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG 134 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC
Confidence 3444444555568999999999999999999874 37899999999999999999999998 58999999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
|+..++ ....||.|++|+||.+.+..
T Consensus 135 d~~~~~----------------------~~~~~D~v~~~~~~~~~~~~ 160 (241)
T 3gdh_A 135 DFLLLA----------------------SFLKADVVFLSPPWGGPDYA 160 (241)
T ss_dssp CHHHHG----------------------GGCCCSEEEECCCCSSGGGG
T ss_pred ChHHhc----------------------ccCCCCEEEECCCcCCcchh
Confidence 887643 12589999999999886643
No 50
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.13 E-value=1.9e-10 Score=123.63 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=87.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~ 155 (731)
.+|.+|||+|||+|+.+.. +. + .+.|+|+|+|+..++.+++|++.++. .++.+.+.|+..+.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~---------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----- 256 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--N---------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----- 256 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--T---------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----
T ss_pred CCCCEEEEccCccCHHHHh-cc--C---------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----
Confidence 5899999999999999988 65 2 47999999999999999999999997 57999999887642
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
..||+|++|+|..+. .++..++++|++||+|+|++
T Consensus 257 -------------------~~fD~Vi~dpP~~~~--------------------------~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 257 -------------------VKGNRVIMNLPKFAH--------------------------KFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp -------------------CCEEEEEECCTTTGG--------------------------GGHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCcEEEECCcHhHH--------------------------HHHHHHHHHcCCCCEEEEEE
Confidence 469999999995431 46788899999999999999
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
|+-.
T Consensus 292 ~~~~ 295 (336)
T 2yx1_A 292 IGKD 295 (336)
T ss_dssp EESS
T ss_pred eecC
Confidence 9987
No 51
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.12 E-value=3.5e-10 Score=111.27 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++.+|||+|||+|..+..++.. + .+.|+|+|+++..+..+++++++.+. ++.+.+.|+..++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~-~---------~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---- 110 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL-G---------AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---- 110 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT-T---------CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC----
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc-C---------CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC----
Confidence 4567899999999999999988764 1 35899999999999999999988877 7888888876642
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
..||.|++|+|+.-.. + .....+|.++.+++ || +|+
T Consensus 111 --------------------~~~D~v~~~~p~~~~~---~-----------------~~~~~~l~~~~~~l--~~--~~~ 146 (207)
T 1wy7_A 111 --------------------SRVDIVIMNPPFGSQR---K-----------------HADRPFLLKAFEIS--DV--VYS 146 (207)
T ss_dssp --------------------CCCSEEEECCCCSSSS---T-----------------TTTHHHHHHHHHHC--SE--EEE
T ss_pred --------------------CCCCEEEEcCCCcccc---C-----------------CchHHHHHHHHHhc--Cc--EEE
Confidence 3699999999963211 0 11235677888887 43 777
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEE
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVEL 260 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~el 260 (731)
.| +.+.++.+.+..++++.+..++.
T Consensus 147 ~~-~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 147 IH-LAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp EE-ECCHHHHHHHHHHHHHTTEEEEE
T ss_pred EE-eCCcCCHHHHHHHHHHCCCeEEE
Confidence 78 33557778888888887644433
No 52
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.12 E-value=1.5e-10 Score=114.87 Aligned_cols=110 Identities=23% Similarity=0.108 Sum_probs=84.7
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEecccccCCCcccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~--~ni~vt~~Da~~fp~~~~~ 155 (731)
++.+|||+|||+|..+..++.. ..+.|+|+|+|+..++.++++++.++. .++.+.+.|+..+...
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 119 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR----------QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ--- 119 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----------TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS---
T ss_pred CCCeEEEcCCccCHHHHHHHHc----------cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh---
Confidence 6889999999999999887653 136899999999999999999999988 6899999887664210
Q ss_pred CCCCCCCcccccccccccccc-ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH--HhhccCCCEEE
Q 004775 156 KNFSSASDKGIESESNMGQLL-FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG--ISLLKVGGRIV 232 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~-FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA--l~lLKpGG~LV 232 (731)
..... ||.|++|+|+. .+. ...++... .++|||||+++
T Consensus 120 ----------------~~~~~~fD~I~~~~~~~-~~~----------------------~~~~l~~~~~~~~LkpgG~l~ 160 (201)
T 2ift_A 120 ----------------PQNQPHFDVVFLDPPFH-FNL----------------------AEQAISLLCENNWLKPNALIY 160 (201)
T ss_dssp ----------------CCSSCCEEEEEECCCSS-SCH----------------------HHHHHHHHHHTTCEEEEEEEE
T ss_pred ----------------hccCCCCCEEEECCCCC-Ccc----------------------HHHHHHHHHhcCccCCCcEEE
Confidence 01257 99999999942 111 12334444 66899999999
Q ss_pred EEeCCCC
Q 004775 233 YSTCSMN 239 (731)
Q Consensus 233 YSTCSl~ 239 (731)
+++|+..
T Consensus 161 i~~~~~~ 167 (201)
T 2ift_A 161 VETEKDK 167 (201)
T ss_dssp EEEESSS
T ss_pred EEECCCC
Confidence 9998875
No 53
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.11 E-value=4.6e-10 Score=110.42 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=98.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..++.. +.+.|+|+|+++..++.+++++...+..++.+...|+..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 122 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL----------GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----- 122 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----
Confidence 468899999999999999887753 24699999999999999999999998877888888875532
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...||.|+++.+. ....+++..+.++|||||++++++
T Consensus 123 ------------------~~~fD~i~~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 123 ------------------DGKFDLIVANILA-------------------------EILLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp ------------------CSCEEEEEEESCH-------------------------HHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred ------------------CCCceEEEECCcH-------------------------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2579999997651 112567889999999999999976
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
... +....+...+++.+ ++++.+
T Consensus 160 ~~~---~~~~~~~~~~~~~G--f~~~~~ 182 (205)
T 3grz_A 160 IDY---LQLPKIEQALAENS--FQIDLK 182 (205)
T ss_dssp EEG---GGHHHHHHHHHHTT--EEEEEE
T ss_pred cCc---ccHHHHHHHHHHcC--CceEEe
Confidence 544 35666778888765 666554
No 54
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=99.11 E-value=1.1e-10 Score=127.00 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
+.+|||+|||+|..|+.+|.. .+.|+|+|+++..++.+++|++.++..++.+...|+..+..... ...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-----------~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~-~~~ 281 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-----------FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN-GVR 281 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-----------SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHS-SCC
T ss_pred CCEEEEccCCCCHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHh-hcc
Confidence 678999999999999988752 36899999999999999999999999899999998876421000 000
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.- ............||+|++|||+.|. ...++++|++||+|||++|+-
T Consensus 282 ~~----~~l~~~~~~~~~fD~Vv~dPPr~g~----------------------------~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 282 EF----NRLQGIDLKSYQCETIFVDPPRSGL----------------------------DSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp CC----TTGGGSCGGGCCEEEEEECCCTTCC----------------------------CHHHHHHHTTSSEEEEEESCH
T ss_pred cc----ccccccccccCCCCEEEECcCcccc----------------------------HHHHHHHHhCCCEEEEEECCH
Confidence 00 0000000011379999999997642 123456677999999999963
No 55
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.11 E-value=2.9e-10 Score=117.53 Aligned_cols=157 Identities=12% Similarity=0.141 Sum_probs=100.5
Q ss_pred cccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH---cCCC-ceEE
Q 004775 66 VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR---MCTA-NLIV 141 (731)
Q Consensus 66 ~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR---lg~~-ni~v 141 (731)
-+++...++.+.++.+|||+|||+|..+..++... +...|+|+|+++..+.++++++.. ++.. ++.+
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~---------~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~ 94 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARL---------EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEV 94 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHC---------TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEE
T ss_pred HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEE
Confidence 34555666778889999999999999999998874 357999999999999999999988 7765 5889
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
.+.|+..+..-.. ........||.|++|||+...+ -.++++..+... ..........++..+
T Consensus 95 ~~~D~~~~~~~~~--------------~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a---~~~~~~~~~~~l~~~ 156 (260)
T 2ozv_A 95 LEADVTLRAKARV--------------EAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEA---HAMTEGLFEDWIRTA 156 (260)
T ss_dssp EECCTTCCHHHHH--------------HTTCCTTCEEEEEECCCC-------------------------CCHHHHHHHH
T ss_pred EeCCHHHHhhhhh--------------hhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHH---hhcCcCCHHHHHHHH
Confidence 9998876511000 0001236799999999987764 233444322100 000011246789999
Q ss_pred HhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 222 ISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 222 l~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
.++||+||++++.. +.+.-.-+..++++
T Consensus 157 ~~~LkpgG~l~~~~----~~~~~~~~~~~l~~ 184 (260)
T 2ozv_A 157 SAIMVSGGQLSLIS----RPQSVAEIIAACGS 184 (260)
T ss_dssp HHHEEEEEEEEEEE----CGGGHHHHHHHHTT
T ss_pred HHHcCCCCEEEEEE----cHHHHHHHHHHHHh
Confidence 99999999998863 33333334444543
No 56
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.09 E-value=9.8e-10 Score=108.66 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++.+|||+|||+|..+..++...+ +.+.|+++|+++..+..+++++...+.+++.+...|+..++.
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~- 102 (219)
T 3dh0_A 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVG--------EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL- 102 (219)
T ss_dssp HHTCCTTCEEEESSCTTCTTHHHHHHHHT--------TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS-
T ss_pred HhCCCCCCEEEEEecCCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC-
Confidence 34678899999999999999999998753 257999999999999999999999988889999998876531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++... +..-+ ....+|..+.++|||||+++
T Consensus 103 --------------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~LkpgG~l~ 140 (219)
T 3dh0_A 103 --------------------PDNTVDFIFMAFT------FHELS----------------EPLKFLEELKRVAKPFAYLA 140 (219)
T ss_dssp --------------------CSSCEEEEEEESC------GGGCS----------------SHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCeeEEEeehh------hhhcC----------------CHHHHHHHHHHHhCCCeEEE
Confidence 1267999997422 11100 12568999999999999999
Q ss_pred EEeCCCCCc---------CcHHHHHHHHHHCCCcEEEEec
Q 004775 233 YSTCSMNPV---------ENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 233 YSTCSl~p~---------ENEaVV~~~L~~~~g~~elvd~ 263 (731)
++++..... -+...+..+|++.| |+++.+
T Consensus 141 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~ 178 (219)
T 3dh0_A 141 IIDWKKEERDKGPPPEEVYSEWEVGLILEDAG--IRVGRV 178 (219)
T ss_dssp EEEECSSCCSSSCCGGGSCCHHHHHHHHHHTT--CEEEEE
T ss_pred EEEecccccccCCchhcccCHHHHHHHHHHCC--CEEEEE
Confidence 987664432 24677788888876 555554
No 57
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.08 E-value=5.8e-10 Score=112.78 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=96.5
Q ss_pred ecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE
Q 004775 62 RQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV 141 (731)
Q Consensus 62 ~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~v 141 (731)
.|.++++.....+++.++.+|||+|||+|..+..+++. .+.|+++|+++..+..+++++...+.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 73 (239)
T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-----------VQECIGVDATKEMVEVASSFAQEKGVENVRF 73 (239)
T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHHHHHHTCCSEEE
T ss_pred ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCCeEE
Confidence 36677777888899999999999999999999888654 2589999999999999999998888888999
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
...|+..+|. ....||.|++... +. .|. ....+|..+
T Consensus 74 ~~~d~~~~~~---------------------~~~~fD~v~~~~~------l~-------~~~---------~~~~~l~~~ 110 (239)
T 1xxl_A 74 QQGTAESLPF---------------------PDDSFDIITCRYA------AH-------HFS---------DVRKAVREV 110 (239)
T ss_dssp EECBTTBCCS---------------------CTTCEEEEEEESC------GG-------GCS---------CHHHHHHHH
T ss_pred EecccccCCC---------------------CCCcEEEEEECCc------hh-------hcc---------CHHHHHHHH
Confidence 8888876531 1267999997421 11 111 124678999
Q ss_pred HhhccCCCEEEEEeCCC
Q 004775 222 ISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 222 l~lLKpGG~LVYSTCSl 238 (731)
.++|||||+++.+++..
T Consensus 111 ~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 111 ARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp HHHEEEEEEEEEEEECB
T ss_pred HHHcCCCcEEEEEEcCC
Confidence 99999999999876543
No 58
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.08 E-value=1.7e-09 Score=109.47 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=89.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~ 152 (731)
..+.++.+|||+|||+|..+..+++.. .+.|+|+|+++..+..++++++..+..+ +.+...|+..+|.
T Consensus 42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~- 110 (257)
T 3f4k_A 42 NELTDDAKIADIGCGTGGQTLFLADYV----------KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF- 110 (257)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHC----------CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS-
T ss_pred hcCCCCCeEEEeCCCCCHHHHHHHHhC----------CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC-
Confidence 367889999999999999999998873 2499999999999999999999998765 8899998876541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||+|++... +.. + ...++|..+.++|||||+++
T Consensus 111 --------------------~~~~fD~v~~~~~------l~~---------------~--~~~~~l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 111 --------------------QNEELDLIWSEGA------IYN---------------I--GFERGMNEWSKYLKKGGFIA 147 (257)
T ss_dssp --------------------CTTCEEEEEEESC------SCC---------------C--CHHHHHHHHHTTEEEEEEEE
T ss_pred --------------------CCCCEEEEEecCh------Hhh---------------c--CHHHHHHHHHHHcCCCcEEE
Confidence 1268999998532 110 0 02357899999999999999
Q ss_pred EEeCCCCC
Q 004775 233 YSTCSMNP 240 (731)
Q Consensus 233 YSTCSl~p 240 (731)
++++++..
T Consensus 148 ~~~~~~~~ 155 (257)
T 3f4k_A 148 VSEASWFT 155 (257)
T ss_dssp EEEEEESS
T ss_pred EEEeeccC
Confidence 99876433
No 59
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.07 E-value=9.9e-10 Score=105.42 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFP 150 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n--i~vt~~Da~~fp 150 (731)
.+.+.++.+|||+|||+|..+..++.. .+.|+++|+++..+..+++++...+..+ +.+...|+....
T Consensus 47 ~~~~~~~~~vLdiG~G~G~~~~~~~~~-----------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 47 NVVVDKDDDILDLGCGYGVIGIALADE-----------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HCCCCTTCEEEEETCTTSHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred HcccCCCCeEEEeCCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 345678999999999999999888764 2689999999999999999999888877 888888876521
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
....||.|++++|... .......++..+.++|+|||+
T Consensus 116 ----------------------~~~~~D~v~~~~~~~~---------------------~~~~~~~~l~~~~~~L~~gG~ 152 (194)
T 1dus_A 116 ----------------------KDRKYNKIITNPPIRA---------------------GKEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp ----------------------TTSCEEEEEECCCSTT---------------------CHHHHHHHHHHHHHHEEEEEE
T ss_pred ----------------------ccCCceEEEECCCccc---------------------chhHHHHHHHHHHHHcCCCCE
Confidence 1257999999887321 012345688999999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
++.++++. ++..-+...|++.-..++++.
T Consensus 153 l~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 181 (194)
T 1dus_A 153 IWVVIQTK---QGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp EEEEEEST---HHHHHHHHHHHHHHSCCEEEE
T ss_pred EEEEECCC---CChHHHHHHHHHHhcceEEEe
Confidence 99998765 333334555555433455443
No 60
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.07 E-value=3.9e-10 Score=108.06 Aligned_cols=130 Identities=18% Similarity=0.141 Sum_probs=100.5
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc-CC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH-FP 150 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~-fp 150 (731)
.+++.++.+|||+|||+|..+..++.. .+.|+++|+++.++..++++++..+. .++.+.+.|+.. ++
T Consensus 28 ~~~~~~~~~vldiG~G~G~~~~~l~~~-----------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 96 (192)
T 1l3i_A 28 LAEPGKNDVAVDVGCGTGGVTLELAGR-----------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC 96 (192)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHTT-----------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHh-----------cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc
Confidence 456789999999999999999888764 26899999999999999999999887 678888877654 11
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ...||.|+++.+.. . ...++..+.++|+|||+
T Consensus 97 ~----------------------~~~~D~v~~~~~~~---------------------~----~~~~l~~~~~~l~~gG~ 129 (192)
T 1l3i_A 97 K----------------------IPDIDIAVVGGSGG---------------------E----LQEILRIIKDKLKPGGR 129 (192)
T ss_dssp T----------------------SCCEEEEEESCCTT---------------------C----HHHHHHHHHHTEEEEEE
T ss_pred c----------------------CCCCCEEEECCchH---------------------H----HHHHHHHHHHhcCCCcE
Confidence 0 14799999875520 0 14678899999999999
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+++++|+. ++..-+..+|++.+..++.+++
T Consensus 130 l~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 159 (192)
T 1l3i_A 130 IIVTAILL---ETKFEAMECLRDLGFDVNITEL 159 (192)
T ss_dssp EEEEECBH---HHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEecCc---chHHHHHHHHHHCCCceEEEEE
Confidence 99998864 4555667778877655555554
No 61
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.07 E-value=1.9e-10 Score=116.40 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=88.3
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCR 153 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~fp~~~ 153 (731)
.+++.+|||+|||+|..|..+++.+. +.+.|+++|+++.++..+++++++.|.. ++.+...|+..+..
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~-- 123 (221)
T 3dr5_A 54 GNGSTGAIAITPAAGLVGLYILNGLA--------DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS-- 123 (221)
T ss_dssp CTTCCEEEEESTTHHHHHHHHHHHSC--------TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG--
T ss_pred CCCCCCEEEEcCCchHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH--
Confidence 34556999999999999999999864 2589999999999999999999999876 79999998876421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
......||.|++|++.. .....+..+.++|||||+||+
T Consensus 124 -----------------~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 124 -----------------RLANDSYQLVFGQVSPM-------------------------DLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp -----------------GSCTTCEEEEEECCCTT-------------------------THHHHHHHHHHHEEEEEEEEE
T ss_pred -----------------HhcCCCcCeEEEcCcHH-------------------------HHHHHHHHHHHHcCCCcEEEE
Confidence 01126799999987521 013468888999999999999
Q ss_pred EeCCC
Q 004775 234 STCSM 238 (731)
Q Consensus 234 STCSl 238 (731)
..+.+
T Consensus 162 dn~~~ 166 (221)
T 3dr5_A 162 ADALL 166 (221)
T ss_dssp TTTTG
T ss_pred eCCCC
Confidence 87765
No 62
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.07 E-value=2.9e-10 Score=115.83 Aligned_cols=129 Identities=13% Similarity=0.147 Sum_probs=96.5
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIV 141 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~v 141 (731)
+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|+++.++..+++++++.|.. ++.+
T Consensus 55 ~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 126 (237)
T 3c3y_A 55 SPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPD--------DGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126 (237)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCT--------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred CHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 3333444445556667889999999999999999998642 589999999999999999999999885 5888
Q ss_pred EecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004775 142 TNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (731)
Q Consensus 142 t~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (731)
...|+..+ +.+. ........||.|++|+++. .+..++..
T Consensus 127 ~~gda~~~l~~l~---------------~~~~~~~~fD~I~~d~~~~-------------------------~~~~~l~~ 166 (237)
T 3c3y_A 127 IESDAMLALDNLL---------------QGQESEGSYDFGFVDADKP-------------------------NYIKYHER 166 (237)
T ss_dssp EESCHHHHHHHHH---------------HSTTCTTCEEEEEECSCGG-------------------------GHHHHHHH
T ss_pred EEcCHHHHHHHHH---------------hccCCCCCcCEEEECCchH-------------------------HHHHHHHH
Confidence 88887653 1100 0000125799999997632 12457888
Q ss_pred HHhhccCCCEEEEEeCCCC
Q 004775 221 GISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 221 Al~lLKpGG~LVYSTCSl~ 239 (731)
+.++|||||+||+.+|-+.
T Consensus 167 ~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 167 LMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp HHHHEEEEEEEEEECTTGG
T ss_pred HHHhcCCCeEEEEecCCcC
Confidence 8999999999999987543
No 63
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.06 E-value=1.2e-09 Score=108.75 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=99.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++... |.+.|+|+|+++..+..+.+++++.+..++.+...|+..++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---- 106 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN---------PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY---- 106 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC---------CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----
Confidence 468899999999999999998874 3579999999999999999999999988999999998765421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh--cccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK--WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~--w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|+++.|.. |.+ ..... ..+..+|..+.++|||||+++++
T Consensus 107 ---------------~~~~~~D~i~~~~~~~-----------~~~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 107 ---------------FEDGEIDRLYLNFSDP-----------WPKKRHEKRR-----LTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp ---------------SCTTCCSEEEEESCCC-----------CCSGGGGGGS-----TTSHHHHHHHHHHSCTTCEEEEE
T ss_pred ---------------cCCCCCCEEEEECCCC-----------ccccchhhhc-----cCCHHHHHHHHHHcCCCcEEEEE
Confidence 1125799999987621 111 00010 12567899999999999999988
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
|-.. .--.-+.+.+++++ ++++.+
T Consensus 156 ~~~~---~~~~~~~~~~~~~g--~~~~~~ 179 (214)
T 1yzh_A 156 TDNR---GLFEYSLVSFSQYG--MKLNGV 179 (214)
T ss_dssp ESCH---HHHHHHHHHHHHHT--CEEEEE
T ss_pred eCCH---HHHHHHHHHHHHCC--Ceeeec
Confidence 6321 11233445556655 555444
No 64
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.06 E-value=5.9e-10 Score=118.23 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=86.6
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.++.+++|++|||+|||||+.|+.++... +.+.|+|+|+|+.+++.+++++++.|..++.+...|+..++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~---------~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~- 185 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHV---------YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID- 185 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHT---------TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHc---------cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-
Confidence 35789999999999999999887665443 25799999999999999999999998888999999987643
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
...||+|+++.- . + ...+++..+.++|||||+|
T Consensus 186 ----------------------d~~FDvV~~~a~------~---~----------------d~~~~l~el~r~LkPGG~L 218 (298)
T 3fpf_A 186 ----------------------GLEFDVLMVAAL------A---E----------------PKRRVFRNIHRYVDTETRI 218 (298)
T ss_dssp ----------------------GCCCSEEEECTT------C---S----------------CHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------CCCcCEEEECCC------c---c----------------CHHHHHHHHHHHcCCCcEE
Confidence 267999997432 0 1 1246889999999999999
Q ss_pred EEE
Q 004775 232 VYS 234 (731)
Q Consensus 232 VYS 234 (731)
|..
T Consensus 219 vv~ 221 (298)
T 3fpf_A 219 IYR 221 (298)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 65
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.06 E-value=1.8e-09 Score=113.68 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=90.3
Q ss_pred hcC-CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004775 73 FLD-VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (731)
Q Consensus 73 lLd-~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp 150 (731)
.+. ++++.+|||+|||+|..+..+++.. ...|+++|+++.++..+++++++.+.. ++.+...|+..+|
T Consensus 111 ~l~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 111 HLGQAGPDDTLVDAGCGRGGSMVMAHRRF----------GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180 (312)
T ss_dssp TSCCCCTTCEEEEESCTTSHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HhccCCCCCEEEEecCCCCHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC
Confidence 344 7899999999999999999998874 258999999999999999999999875 7899999887654
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||+|++.- ++ .. + . +.++|..+.++|||||+
T Consensus 181 ~---------------------~~~~fD~V~~~~------~l-------~~--------~-~-~~~~l~~~~~~LkpgG~ 216 (312)
T 3vc1_A 181 F---------------------DKGAVTASWNNE------ST-------MY--------V-D-LHDLFSEHSRFLKVGGR 216 (312)
T ss_dssp C---------------------CTTCEEEEEEES------CG-------GG--------S-C-HHHHHHHHHHHEEEEEE
T ss_pred C---------------------CCCCEeEEEECC------ch-------hh--------C-C-HHHHHHHHHHHcCCCcE
Confidence 1 126899999721 11 00 1 0 56789999999999999
Q ss_pred EEEEeCCCCC
Q 004775 231 IVYSTCSMNP 240 (731)
Q Consensus 231 LVYSTCSl~p 240 (731)
+++++.....
T Consensus 217 l~~~~~~~~~ 226 (312)
T 3vc1_A 217 YVTITGCWNP 226 (312)
T ss_dssp EEEEEEEECT
T ss_pred EEEEEccccc
Confidence 9998855433
No 66
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.06 E-value=4.5e-10 Score=115.72 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=97.4
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++.+|||+|||+|..+..++... |.+.|+|+|++++++..+++++++++..|+.+.+.|+..++..
T Consensus 77 ~~~~~~~vLDiG~G~G~~~i~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~-- 145 (249)
T 3g89_A 77 LWQGPLRVLDLGTGAGFPGLPLKIVR---------PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE-- 145 (249)
T ss_dssp CCCSSCEEEEETCTTTTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS--
T ss_pred ccCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc--
Confidence 34678999999999999999998763 3589999999999999999999999998999999988775421
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
......||.|++.+- ..+ ..++..+.++|||||++++.
T Consensus 146 ----------------~~~~~~fD~I~s~a~----------------------~~~----~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 146 ----------------AGHREAYARAVARAV----------------------APL----CVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp ----------------TTTTTCEEEEEEESS----------------------CCH----HHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------cccCCCceEEEECCc----------------------CCH----HHHHHHHHHHcCCCeEEEEE
Confidence 011257999997431 011 35788899999999999988
Q ss_pred eCCCCCcCcHHHHHHHHHHCCC
Q 004775 235 TCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g 256 (731)
.+.....| -..+..+++..|.
T Consensus 184 ~g~~~~~e-~~~~~~~l~~~G~ 204 (249)
T 3g89_A 184 KGPRVEEE-LAPLPPALERLGG 204 (249)
T ss_dssp ECSCCHHH-HTTHHHHHHHHTE
T ss_pred eCCCcHHH-HHHHHHHHHHcCC
Confidence 77643333 2334566677663
No 67
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.06 E-value=1.6e-10 Score=122.04 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=96.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCcc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~~ 153 (731)
.+.+|||+|||+|+.+..++... +.+.|+++|+|+..++.+++++.++ +.+++.+...|+..+..
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-- 158 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD---------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-- 158 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST---------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG--
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh--
Confidence 45799999999999999887642 2479999999999999999987652 24678999998866421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....+||+|++|+|+.+.|.. .+-.+.+++..+.++|||||++++
T Consensus 159 ------------------~~~~~fD~Ii~d~~~~~~~~~-----------------~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 159 ------------------KFKNEFDVIIIDSTDPTAGQG-----------------GHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp ------------------GCSSCEEEEEEEC---------------------------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------hCCCCceEEEEcCCCcccCch-----------------hhhhHHHHHHHHHHhcCCCcEEEE
Confidence 012579999999986422210 001235788899999999999999
Q ss_pred EeCC--CCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 234 STCS--MNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 234 STCS--l~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
.+|+ +++.+...+++.+.+... .+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~F~-~v~~~~ 233 (296)
T 1inl_A 204 ETEDPFYDIGWFKLAYRRISKVFP-ITRVYL 233 (296)
T ss_dssp ECCCTTTTHHHHHHHHHHHHHHCS-EEEEEE
T ss_pred EccCcccCHHHHHHHHHHHHHHCC-ceEEEE
Confidence 9998 556666777666655533 444433
No 68
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.05 E-value=9.3e-10 Score=108.48 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=86.0
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
...++++++.+|||+|||+|..+.+++.. .+.|+++|+++.+++.+++++++++..++.+...|+...+
T Consensus 70 ~~~l~~~~~~~vLdiG~G~G~~~~~la~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 70 TELLELTPQSRVLEIGTGSGYQTAILAHL-----------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHhcCCCCCCEEEEEcCCCCHHHHHHHHh-----------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 44567899999999999999999999886 3689999999999999999999999889999998876632
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||+|+++..+. .-+ ..+.++|||||+
T Consensus 139 ~---------------------~~~~~D~i~~~~~~~------~~~----------------------~~~~~~L~pgG~ 169 (210)
T 3lbf_A 139 Q---------------------ARAPFDAIIVTAAPP------EIP----------------------TALMTQLDEGGI 169 (210)
T ss_dssp G---------------------GGCCEEEEEESSBCS------SCC----------------------THHHHTEEEEEE
T ss_pred c---------------------cCCCccEEEEccchh------hhh----------------------HHHHHhcccCcE
Confidence 1 136799999975431 111 135779999999
Q ss_pred EEEEeCC
Q 004775 231 IVYSTCS 237 (731)
Q Consensus 231 LVYSTCS 237 (731)
|+.+...
T Consensus 170 lv~~~~~ 176 (210)
T 3lbf_A 170 LVLPVGE 176 (210)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9998665
No 69
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.05 E-value=1.3e-10 Score=115.85 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=94.6
Q ss_pred ecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eE
Q 004775 62 RQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LI 140 (731)
Q Consensus 62 ~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~ 140 (731)
.+.....+...++...++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+..+ +.
T Consensus 48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 119 (225)
T 3tr6_A 48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPK--------DGTLITCDVDEKSTALAKEYWEKAGLSDKIG 119 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCT--------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCC--------CCEEEEEeCCHHHHHHHHHHHHHCCCCCceE
Confidence 33444444455556678899999999999999999886532 5899999999999999999999998864 88
Q ss_pred EEecccccCC-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHH
Q 004775 141 VTNHEAQHFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM 219 (731)
Q Consensus 141 vt~~Da~~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~ 219 (731)
+...|+..+. ... .......||.|++|++. ..+..++.
T Consensus 120 ~~~~d~~~~~~~~~----------------~~~~~~~fD~v~~~~~~-------------------------~~~~~~l~ 158 (225)
T 3tr6_A 120 LRLSPAKDTLAELI----------------HAGQAWQYDLIYIDADK-------------------------ANTDLYYE 158 (225)
T ss_dssp EEESCHHHHHHHHH----------------TTTCTTCEEEEEECSCG-------------------------GGHHHHHH
T ss_pred EEeCCHHHHHHHhh----------------hccCCCCccEEEECCCH-------------------------HHHHHHHH
Confidence 8888875431 100 00011579999998861 11235788
Q ss_pred HHHhhccCCCEEEEEeCCC
Q 004775 220 RGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 220 rAl~lLKpGG~LVYSTCSl 238 (731)
.+.++|||||+|++..+.+
T Consensus 159 ~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 159 ESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp HHHHHEEEEEEEEEECSSG
T ss_pred HHHHhcCCCcEEEEeCCCc
Confidence 8999999999999875553
No 70
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.04 E-value=4e-10 Score=111.77 Aligned_cols=109 Identities=19% Similarity=0.104 Sum_probs=82.5
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||+|||+|..+..++.. ....|+|+|+|+..++.++++++..+..++.+.+.|+..+..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~----------~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~------ 117 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR----------YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA------ 117 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----------TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS------
T ss_pred CCCeEEEeCCCcCHHHHHHHhc----------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh------
Confidence 6889999999999999887654 135899999999999999999999988889999988765311
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH--HhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG--ISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA--l~lLKpGG~LVYST 235 (731)
.....||.|++|+|.. .+. ...++... .++|+|||+|++++
T Consensus 118 --------------~~~~~fD~V~~~~p~~-~~~----------------------~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 118 --------------QKGTPHNIVFVDPPFR-RGL----------------------LEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp --------------SCCCCEEEEEECCSSS-TTT----------------------HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --------------hcCCCCCEEEECCCCC-CCc----------------------HHHHHHHHHhcCccCCCcEEEEEE
Confidence 0125799999999932 110 01223333 45699999999998
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
|+..
T Consensus 161 ~~~~ 164 (202)
T 2fpo_A 161 EVEN 164 (202)
T ss_dssp EGGG
T ss_pred CCCc
Confidence 8754
No 71
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.04 E-value=4.6e-10 Score=113.87 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=95.7
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
++.++.+|||+|||+|..+..++... +.+.|+|+|+++.++..+++++++++..++.+.+.|+..++..
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 135 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICF---------PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-- 135 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc--
Confidence 45678999999999999999998752 3579999999999999999999999988899999988765310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
......||.|+++.. . ....++..+.++|||||++++.
T Consensus 136 ----------------~~~~~~fD~V~~~~~----------------------~----~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 136 ----------------KDVRESYDIVTARAV----------------------A----RLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp ----------------TTTTTCEEEEEEECC----------------------S----CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------ccccCCccEEEEecc----------------------C----CHHHHHHHHHHhcCCCCEEEEE
Confidence 001257999998541 0 0246788999999999999998
Q ss_pred eCCCCCcCcHHHHHHHHHHCC
Q 004775 235 TCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~ 255 (731)
.+.....|-+. +...++..+
T Consensus 174 ~g~~~~~~~~~-~~~~l~~~g 193 (240)
T 1xdz_A 174 KAASAEEELNA-GKKAITTLG 193 (240)
T ss_dssp ECC-CHHHHHH-HHHHHHHTT
T ss_pred eCCCchHHHHH-HHHHHHHcC
Confidence 77664433333 345666665
No 72
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.03 E-value=9.8e-10 Score=107.38 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
++++.+|||+|||||+.|..+++.++. +.+.|+|+|+++.. ..+++.+...|+...+...+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~-------~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~ 81 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKN-------YKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIK 81 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTT-------SCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCC-------CCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhc
Confidence 468899999999999999999987531 14899999999831 235677888887664310000
Q ss_pred C--CCCCCCccccccc--cccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 156 K--NFSSASDKGIESE--SNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 156 ~--~~~~~~~~~~~~~--~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
. ............. .......||.|++|.++.-.|.- .++ ......++..+|..+.++|||||++
T Consensus 82 ~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~--~~d---------~~~~~~~~~~~l~~~~~~LkpgG~l 150 (201)
T 2plw_A 82 NINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK--IDD---------HLNSCELTLSITHFMEQYINIGGTY 150 (201)
T ss_dssp ----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH--HHH---------HHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc--ccC---------HHHHHHHHHHHHHHHHHHccCCCEE
Confidence 0 0000000000000 00123589999999865444420 011 1122345678999999999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHHH
Q 004775 232 VYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~ 253 (731)
+.++.. .++...+...|+.
T Consensus 151 v~~~~~---~~~~~~l~~~l~~ 169 (201)
T 2plw_A 151 IVKMYL---GSQTNNLKTYLKG 169 (201)
T ss_dssp EEEEEC---STTHHHHHHHHHT
T ss_pred EEEEeC---CCCHHHHHHHHHH
Confidence 986543 2455555666664
No 73
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.03 E-value=9.5e-10 Score=110.10 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=89.3
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+|... |...|+|+|+++.++..+.+++++.+..|+.+...|+..++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~---- 103 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN---------PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV---- 103 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH----
T ss_pred CCCceEEEEecCCCHHHHHHHHHC---------CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----
Confidence 467899999999999999998873 3579999999999999999999999999999999998764321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.....||.|++..|+ .|.+-. .....+ .+..+|..+.++|||||+|+++|-
T Consensus 104 ---------------~~~~~~d~v~~~~~~-----------p~~~~~-~~~~rl--~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 104 ---------------FEPGEVKRVYLNFSD-----------PWPKKR-HEKRRL--TYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp ---------------CCTTSCCEEEEESCC-----------CCCSGG-GGGGST--TSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ---------------cCcCCcCEEEEECCC-----------CCcCcc-cccccc--CcHHHHHHHHHHcCCCCEEEEEeC
Confidence 112569999986552 111100 000111 256789999999999999999873
No 74
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.03 E-value=3.5e-10 Score=114.50 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=93.4
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIV 141 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~v 141 (731)
|.....+...++...++.+|||+|||+|..|..++... +.+.|+++|+++.++..+++++++.+.. ++.+
T Consensus 56 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 126 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS---------DDIHVTTIERNETMIQYAKQNLATYHFENQVRI 126 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC---------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 44444444555666789999999999999999998742 3589999999999999999999999975 7999
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
...|+..+.. ......||.|++|+++.. +..++..+
T Consensus 127 ~~~d~~~~~~-------------------~~~~~~fD~V~~~~~~~~-------------------------~~~~l~~~ 162 (232)
T 3ntv_A 127 IEGNALEQFE-------------------NVNDKVYDMIFIDAAKAQ-------------------------SKKFFEIY 162 (232)
T ss_dssp EESCGGGCHH-------------------HHTTSCEEEEEEETTSSS-------------------------HHHHHHHH
T ss_pred EECCHHHHHH-------------------hhccCCccEEEEcCcHHH-------------------------HHHHHHHH
Confidence 9998866310 000267999999875321 24578889
Q ss_pred HhhccCCCEEEEEeC
Q 004775 222 ISLLKVGGRIVYSTC 236 (731)
Q Consensus 222 l~lLKpGG~LVYSTC 236 (731)
.++|||||+||+..+
T Consensus 163 ~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 163 TPLLKHQGLVITDNV 177 (232)
T ss_dssp GGGEEEEEEEEEECT
T ss_pred HHhcCCCeEEEEeeC
Confidence 999999999998543
No 75
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.03 E-value=1.2e-09 Score=112.67 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=91.6
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEecccc
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-C--TANLIVTNHEAQ 147 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g--~~ni~vt~~Da~ 147 (731)
...+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.+++.++++++.. | ..++.+...|+.
T Consensus 92 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVG--------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHcCCCCCCEEEEEcccccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 3456889999999999999999999998764 3589999999999999999999887 6 678888888876
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
..+ .....||+|++|+| +.| .+|..+.++|+|
T Consensus 164 ~~~---------------------~~~~~~D~v~~~~~-----------~~~----------------~~l~~~~~~L~p 195 (280)
T 1i9g_A 164 DSE---------------------LPDGSVDRAVLDML-----------APW----------------EVLDAVSRLLVA 195 (280)
T ss_dssp GCC---------------------CCTTCEEEEEEESS-----------CGG----------------GGHHHHHHHEEE
T ss_pred hcC---------------------CCCCceeEEEECCc-----------CHH----------------HHHHHHHHhCCC
Confidence 642 11257999999876 111 358888999999
Q ss_pred CCEEEEEeCCC
Q 004775 228 GGRIVYSTCSM 238 (731)
Q Consensus 228 GG~LVYSTCSl 238 (731)
||++++++++.
T Consensus 196 gG~l~~~~~~~ 206 (280)
T 1i9g_A 196 GGVLMVYVATV 206 (280)
T ss_dssp EEEEEEEESSH
T ss_pred CCEEEEEeCCH
Confidence 99999988765
No 76
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.03 E-value=2.4e-09 Score=109.68 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=89.4
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~ 153 (731)
.+.++.+|||+|||+|..+..+++. +.+.|+|+|+++..+..++++++..+.. ++.+...|+..++.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 110 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGH----------VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF-- 110 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTT----------CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--
Confidence 4678999999999999999998775 2469999999999999999999998875 58999998876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++...... + ....+|..+.++|||||+++.
T Consensus 111 -------------------~~~~fD~i~~~~~~~~-------------~----------~~~~~l~~~~~~LkpgG~l~~ 148 (267)
T 3kkz_A 111 -------------------RNEELDLIWSEGAIYN-------------I----------GFERGLNEWRKYLKKGGYLAV 148 (267)
T ss_dssp -------------------CTTCEEEEEESSCGGG-------------T----------CHHHHHHHHGGGEEEEEEEEE
T ss_pred -------------------CCCCEEEEEEcCCcee-------------c----------CHHHHHHHHHHHcCCCCEEEE
Confidence 1267999998443110 0 024578999999999999999
Q ss_pred EeCCCCCc
Q 004775 234 STCSMNPV 241 (731)
Q Consensus 234 STCSl~p~ 241 (731)
+++++...
T Consensus 149 ~~~~~~~~ 156 (267)
T 3kkz_A 149 SECSWFTD 156 (267)
T ss_dssp EEEEESSS
T ss_pred EEeeecCC
Confidence 98875443
No 77
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.01 E-value=5.7e-09 Score=106.64 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=98.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc-CCCcc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH-FPGCR 153 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~-fp~~~ 153 (731)
+.+|++|||+|||+|..++.++..- +.+.|+|+|+++..+..+++|++++|.. ++.+...|+.. ++
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~--- 80 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERG---------QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE--- 80 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc---
Confidence 5689999999999999999987751 3689999999999999999999999986 48888888643 11
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++ .|.| ..+-.+||..+...|++||++|.
T Consensus 81 -------------------~~~~~D~Ivi----aG~G--------------------g~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 81 -------------------ETDQVSVITI----AGMG--------------------GRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp -------------------GGGCCCEEEE----EEEC--------------------HHHHHHHHHHTGGGCTTCCEEEE
T ss_pred -------------------cCcCCCEEEE----cCCC--------------------hHHHHHHHHHHHHHhCCCCEEEE
Confidence 0126999885 2333 13346799999999999999999
Q ss_pred EeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 234 STCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+.- .....|...|.++| |++++-
T Consensus 118 q~~-----~~~~~vr~~L~~~G--f~i~~e 140 (225)
T 3kr9_A 118 QPN-----NREDDLRIWLQDHG--FQIVAE 140 (225)
T ss_dssp EES-----SCHHHHHHHHHHTT--EEEEEE
T ss_pred ECC-----CCHHHHHHHHHHCC--CEEEEE
Confidence 754 47888899998876 555553
No 78
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.01 E-value=2.1e-09 Score=114.65 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=84.5
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----------CCceE
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----------TANLI 140 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-----------~~ni~ 140 (731)
..+++.+|.+|||+|||+|..|..++..++ +.+.|+|+|+++.++..+++++.+++ ..++.
T Consensus 99 ~~l~~~~g~~VLDiG~G~G~~~~~la~~~g--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 99 SMMDINPGDTVLEAGSGSGGMSLFLSKAVG--------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp HHHTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 456889999999999999999999998764 25899999999999999999998753 35788
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004775 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (731)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (731)
+...|+..+.. ......||+|++|+|.. | .++..
T Consensus 171 ~~~~d~~~~~~-------------------~~~~~~fD~V~~~~~~~--------------~-------------~~l~~ 204 (336)
T 2b25_A 171 FIHKDISGATE-------------------DIKSLTFDAVALDMLNP--------------H-------------VTLPV 204 (336)
T ss_dssp EEESCTTCCC--------------------------EEEEEECSSST--------------T-------------TTHHH
T ss_pred EEECChHHccc-------------------ccCCCCeeEEEECCCCH--------------H-------------HHHHH
Confidence 88888766421 01124699999987621 1 15788
Q ss_pred HHhhccCCCEEEEEe
Q 004775 221 GISLLKVGGRIVYST 235 (731)
Q Consensus 221 Al~lLKpGG~LVYST 235 (731)
+.++|||||+|+..+
T Consensus 205 ~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 205 FYPHLKHGGVCAVYV 219 (336)
T ss_dssp HGGGEEEEEEEEEEE
T ss_pred HHHhcCCCcEEEEEe
Confidence 899999999998553
No 79
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.00 E-value=7.5e-11 Score=120.86 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=104.2
Q ss_pred hhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH
Q 004775 42 QTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (731)
Q Consensus 42 ~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~ 121 (731)
+.+..+.++.. +...|.+..+.....+...++...++.+|||+|||+|..|..+|+.+.. .|.|+++|+++
T Consensus 25 ~~l~~~~~~~~-~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~--------~~~v~~iD~~~ 95 (242)
T 3r3h_A 25 PALAALRKETS-TMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPD--------DGQVITCDINE 95 (242)
T ss_dssp HHHHHHHHTTS-SSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCT--------TCEEEEEECCC
T ss_pred HHHHHHHHHHH-hCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCC--------CCEEEEEECCH
Confidence 44555555422 1222344455555555566666678889999999999999999987632 58999999999
Q ss_pred HHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh
Q 004775 122 QRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR 200 (731)
Q Consensus 122 ~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~ 200 (731)
..+..+++++++.+.. ++.+...|+..+..... .......||.|++|+++.
T Consensus 96 ~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~---------------~~~~~~~fD~V~~d~~~~------------- 147 (242)
T 3r3h_A 96 GWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLL---------------NEGGEHQFDFIFIDADKT------------- 147 (242)
T ss_dssp SSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHH---------------HHHCSSCEEEEEEESCGG-------------
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHh---------------hccCCCCEeEEEEcCChH-------------
Confidence 9999999999999875 79999998865321000 000126799999987510
Q ss_pred hcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 201 KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 201 ~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.....+..+.++|||||+||+..+.+
T Consensus 148 ------------~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 148 ------------NYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp ------------GHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred ------------HhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 01346888899999999999875543
No 80
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.00 E-value=1.9e-09 Score=107.77 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++++|||+|||+|..+..++..++. .+.|+|+|+++..+..+.+++++. .++.+...|+......
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~--------~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~-- 137 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGW--------EGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEY-- 137 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCT--------TSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGG--
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCC--------CeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchh--
Confidence 4788999999999999999999988642 479999999999999998888755 6788888887653210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
......||.|++|+| .++ ....++..+.++|||||+++++
T Consensus 138 ----------------~~~~~~~D~v~~~~~---------~~~---------------~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 138 ----------------RALVPKVDVIFEDVA---------QPT---------------QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ----------------TTTCCCEEEEEECCC---------STT---------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------hcccCCceEEEECCC---------CHh---------------HHHHHHHHHHHhcCCCCEEEEE
Confidence 001247999999987 111 1123488899999999999987
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
.
T Consensus 178 ~ 178 (227)
T 1g8a_A 178 V 178 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 81
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.00 E-value=3.4e-09 Score=100.87 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=97.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+++.++.+|||+|||+|..+..++. . ...|+|+|+++..++.++++++.++..++.+.+.|+.. +
T Consensus 30 ~~~~~~~~~vLdiG~G~G~~~~~l~~--~---------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-- 95 (183)
T 2yxd_A 30 KLNLNKDDVVVDVGCGSGGMTVEIAK--R---------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V-- 95 (183)
T ss_dssp HHCCCTTCEEEEESCCCSHHHHHHHT--T---------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H--
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHh--c---------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c--
Confidence 34667899999999999999998876 2 47999999999999999999999988888888887654 1
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.....||.|+++.+ . + ...++..+.++ |||+++
T Consensus 96 -------------------~~~~~~D~i~~~~~----~----~------------------~~~~l~~~~~~--~gG~l~ 128 (183)
T 2yxd_A 96 -------------------LDKLEFNKAFIGGT----K----N------------------IEKIIEILDKK--KINHIV 128 (183)
T ss_dssp -------------------GGGCCCSEEEECSC----S----C------------------HHHHHHHHHHT--TCCEEE
T ss_pred -------------------ccCCCCcEEEECCc----c----c------------------HHHHHHHHhhC--CCCEEE
Confidence 11257999999776 0 1 12456666666 999999
Q ss_pred EEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 233 YSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+++|+. ++-.-+...|++++..++.+..
T Consensus 129 ~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 156 (183)
T 2yxd_A 129 ANTIVL---ENAAKIINEFESRGYNVDAVNV 156 (183)
T ss_dssp EEESCH---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeccc---ccHHHHHHHHHHcCCeEEEEEe
Confidence 998875 4445577788888766666654
No 82
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.99 E-value=4.7e-10 Score=111.07 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=90.3
Q ss_pred cccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEec
Q 004775 66 VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNH 144 (731)
Q Consensus 66 ~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~ 144 (731)
...+...++...++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+.. ++.+...
T Consensus 44 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 115 (210)
T 3c3p_A 44 TGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISI--------SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG 115 (210)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCT--------TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES
T ss_pred HHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 3333334445567889999999999999999886531 579999999999999999999988875 5888888
Q ss_pred ccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 145 EAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 145 Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
|+..+ +. ... ||.|++|.++. .+..++..+.+
T Consensus 116 d~~~~~~~---------------------~~~-fD~v~~~~~~~-------------------------~~~~~l~~~~~ 148 (210)
T 3c3p_A 116 DPLGIAAG---------------------QRD-IDILFMDCDVF-------------------------NGADVLERMNR 148 (210)
T ss_dssp CHHHHHTT---------------------CCS-EEEEEEETTTS-------------------------CHHHHHHHHGG
T ss_pred cHHHHhcc---------------------CCC-CCEEEEcCChh-------------------------hhHHHHHHHHH
Confidence 87653 11 124 99999986421 12457888999
Q ss_pred hccCCCEEEEEeCCC
Q 004775 224 LLKVGGRIVYSTCSM 238 (731)
Q Consensus 224 lLKpGG~LVYSTCSl 238 (731)
+|||||+|++..+.+
T Consensus 149 ~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 149 CLAKNALLIAVNALR 163 (210)
T ss_dssp GEEEEEEEEEESSSS
T ss_pred hcCCCeEEEEECccc
Confidence 999999999987654
No 83
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.98 E-value=2.4e-09 Score=111.24 Aligned_cols=111 Identities=22% Similarity=0.160 Sum_probs=86.1
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~ 154 (731)
++||.+|||+|||+|..|..|++.+.. +...|+|+|+|+..++.++++++..+. .++.+.+.|+..+|.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~-------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCS-------SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC---
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCC-------CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc---
Confidence 689999999999999999999887643 245899999999999999999988775 478899998877541
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~-~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
..||.|++-- ++.. +. ....++|++..+.|||||+++.
T Consensus 138 --------------------~~~d~v~~~~------~l~~---------------~~~~~~~~~l~~i~~~LkpGG~lii 176 (261)
T 4gek_A 138 --------------------ENASMVVLNF------TLQF---------------LEPSERQALLDKIYQGLNPGGALVL 176 (261)
T ss_dssp --------------------CSEEEEEEES------CGGG---------------SCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------------------cccccceeee------eeee---------------cCchhHhHHHHHHHHHcCCCcEEEE
Confidence 4689998621 2211 11 1224689999999999999998
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
+.-.
T Consensus 177 ~e~~ 180 (261)
T 4gek_A 177 SEKF 180 (261)
T ss_dssp EEEB
T ss_pred Eecc
Confidence 7543
No 84
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.97 E-value=1.5e-09 Score=109.47 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+|... |...|+|+|+++.++..++.++++.+..|+.+..+|+..+..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~---------p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~----- 98 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR---------PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH----- 98 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH-----
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC---------CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH-----
Confidence 468899999999999999998863 457899999999999999999999999999999999876310
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.......||.|++..|.. |.+ .....-.-.|..++..+.++|||||+++.+|-
T Consensus 99 -------------~~~~~~~~d~v~~~~~~p-----------~~~---~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 99 -------------KMIPDNSLRMVQLFFPDP-----------WHK---ARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp -------------HHSCTTCEEEEEEESCCC-----------CCS---GGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -------------HHcCCCChheEEEeCCCC-----------ccc---hhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 001236899999874421 111 00000011234689999999999999999874
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 152 ~ 152 (218)
T 3dxy_A 152 W 152 (218)
T ss_dssp C
T ss_pred C
Confidence 3
No 85
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.97 E-value=2e-09 Score=114.22 Aligned_cols=108 Identities=15% Similarity=0.239 Sum_probs=86.6
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
...++++++++|||+|||+|..+..+++.... .+.|+++|+++.+++.++++++..+..++.+...|+...+
T Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (317)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT--------TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHhcCCCCcCEEEEecCCchHHHHHHHHhcCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence 34567899999999999999999999987431 4789999999999999999999999888888888876532
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||+|+++.++...+ ..+.++|||||+
T Consensus 140 ~---------------------~~~~fD~Iv~~~~~~~~~----------------------------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 140 P---------------------EFSPYDVIFVTVGVDEVP----------------------------ETWFTQLKEGGR 170 (317)
T ss_dssp G---------------------GGCCEEEEEECSBBSCCC----------------------------HHHHHHEEEEEE
T ss_pred c---------------------cCCCeEEEEEcCCHHHHH----------------------------HHHHHhcCCCcE
Confidence 1 125799999987753211 245679999999
Q ss_pred EEEEe
Q 004775 231 IVYST 235 (731)
Q Consensus 231 LVYST 235 (731)
|+.+.
T Consensus 171 lvi~~ 175 (317)
T 1dl5_A 171 VIVPI 175 (317)
T ss_dssp EEEEB
T ss_pred EEEEE
Confidence 99984
No 86
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.97 E-value=2.5e-09 Score=107.69 Aligned_cols=110 Identities=27% Similarity=0.427 Sum_probs=84.6
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
++++++.+|||+|||+|..+..+++.++ +.+.|+|+|+++..+..+.+++++. .++.+...|+.....+
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g--------~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~- 141 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVG--------PDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKY- 141 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGG-
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhh-
Confidence 4678999999999999999999998863 2579999999999888888888765 6788888887653211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
......||+|++|+| .|+ ....++..+.++|||||+++.
T Consensus 142 -----------------~~~~~~~D~V~~~~~---------~~~---------------~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 142 -----------------RMLIAMVDVIFADVA---------QPD---------------QTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp -----------------GGGCCCEEEEEECCC---------CTT---------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------------cccCCcEEEEEEcCC---------Ccc---------------HHHHHHHHHHHHcCCCeEEEE
Confidence 011357999999887 111 113457789999999999998
Q ss_pred Ee
Q 004775 234 ST 235 (731)
Q Consensus 234 ST 235 (731)
++
T Consensus 181 ~~ 182 (233)
T 2ipx_A 181 SI 182 (233)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 87
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.97 E-value=4.5e-09 Score=106.40 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=87.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~ 151 (731)
.+.+.++.+|||+|||+|..+..++..+ ...|+++|+++..+..++++++..+.. ++.+...|+..++.
T Consensus 31 ~~~~~~~~~VLDiGcG~G~~~~~la~~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 100 (256)
T 1nkv_A 31 VLRMKPGTRILDLGSGSGEMLCTWARDH----------GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 100 (256)
T ss_dssp HTCCCTTCEEEEETCTTCHHHHHHHHHT----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHhc----------CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence 4567899999999999999999998874 258999999999999999999988874 78898888876431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
...||.|+|- +.+...++ ..++|..+.++|||||+|
T Consensus 101 ----------------------~~~fD~V~~~------~~~~~~~~----------------~~~~l~~~~r~LkpgG~l 136 (256)
T 1nkv_A 101 ----------------------NEKCDVAACV------GATWIAGG----------------FAGAEELLAQSLKPGGIM 136 (256)
T ss_dssp ----------------------SSCEEEEEEE------SCGGGTSS----------------SHHHHHHHTTSEEEEEEE
T ss_pred ----------------------CCCCCEEEEC------CChHhcCC----------------HHHHHHHHHHHcCCCeEE
Confidence 2679999972 11111111 256789999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+.++...
T Consensus 137 ~~~~~~~ 143 (256)
T 1nkv_A 137 LIGEPYW 143 (256)
T ss_dssp EEEEEEE
T ss_pred EEecCcc
Confidence 9986543
No 88
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.97 E-value=2.6e-09 Score=108.86 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=96.7
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--------CCCceEEEecccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--------CTANLIVTNHEAQ 147 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl--------g~~ni~vt~~Da~ 147 (731)
+.++.+|||+|||+|..+..++... +.+.|+|+|+++..+..+..+++.+ +..|+.+...|+.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~ 117 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF---------PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAM 117 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS---------TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC---------CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHH
Confidence 3578899999999999999998873 3568999999999999999998877 7789999999987
Q ss_pred cC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 148 HF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 148 ~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
.+ +.. .....||.|++..|.. |.+-... ...+ .+..++..+.++||
T Consensus 118 ~~l~~~-------------------~~~~~~d~v~~~~p~p-----------~~k~~~~-~~r~--~~~~~l~~~~~~Lk 164 (246)
T 2vdv_E 118 KFLPNF-------------------FEKGQLSKMFFCFPDP-----------HFKQRKH-KARI--ITNTLLSEYAYVLK 164 (246)
T ss_dssp SCGGGT-------------------SCTTCEEEEEEESCCC-----------C-------CSSC--CCHHHHHHHHHHEE
T ss_pred HHHHHh-------------------ccccccCEEEEECCCc-----------ccccchh-HHhh--ccHHHHHHHHHHcC
Confidence 63 210 1235789998765521 1110000 0011 14678999999999
Q ss_pred CCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEE
Q 004775 227 VGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (731)
Q Consensus 227 pGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elv 261 (731)
|||+|+++|-. .+-...+...+..++. ++.+
T Consensus 165 pgG~l~~~td~---~~~~~~~~~~~~~~~~-~~~~ 195 (246)
T 2vdv_E 165 EGGVVYTITDV---KDLHEWMVKHLEEHPL-FERL 195 (246)
T ss_dssp EEEEEEEEESC---HHHHHHHHHHHHHSTT-EEEC
T ss_pred CCCEEEEEecc---HHHHHHHHHHHHhCcC-eEec
Confidence 99999987532 2333445555566553 5443
No 89
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.97 E-value=4.4e-09 Score=104.26 Aligned_cols=144 Identities=10% Similarity=-0.003 Sum_probs=99.7
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEecccccC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-----NLIVTNHEAQHF 149 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-----ni~vt~~Da~~f 149 (731)
...++.+|||+|||+|..+..+++.. +...|+++|+|+..+..+++++...+.+ ++.+...|+...
T Consensus 26 ~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 26 KQSNARRVIDLGCGQGNLLKILLKDS---------FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHTTCCEEEEETCTTCHHHHHHHHCT---------TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHhhC---------CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 44678899999999999999987742 2469999999999999999998777665 688888886442
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+ .....||.|+|.- ++..-+ .....++|..+.++|||||
T Consensus 97 ~---------------------~~~~~fD~v~~~~------~l~~~~--------------~~~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 97 D---------------------KRFHGYDAATVIE------VIEHLD--------------LSRLGAFERVLFEFAQPKI 135 (217)
T ss_dssp C---------------------GGGCSCSEEEEES------CGGGCC--------------HHHHHHHHHHHHTTTCCSE
T ss_pred c---------------------ccCCCcCEEeeHH------HHHcCC--------------HHHHHHHHHHHHHHcCCCE
Confidence 2 1126799999732 111111 1123578999999999999
Q ss_pred EEEEEeCCC----------------------CCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004775 230 RIVYSTCSM----------------------NPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (731)
Q Consensus 230 ~LVYSTCSl----------------------~p~ENEaVV~~~L~~~~g~~elvd~s~~lP 268 (731)
.++.+.+.- .+.|-..-+..+++++|-.++...+...-|
T Consensus 136 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~~~ 196 (217)
T 3jwh_A 136 VIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEADP 196 (217)
T ss_dssp EEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCCCS
T ss_pred EEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCccC
Confidence 888776641 222222333477888876666655554434
No 90
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.96 E-value=1.6e-09 Score=103.93 Aligned_cols=111 Identities=15% Similarity=0.062 Sum_probs=83.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~ 154 (731)
..++.+|||+|||+|..+..++.. +.+.|+|+|+++..++.++++++..+.. ++.+...|+..+..
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--- 95 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR----------GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID--- 95 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT----------TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH---
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH---
Confidence 467889999999999999988764 2469999999999999999999988874 68888888765310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH--HhhccCCCEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG--ISLLKVGGRIV 232 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA--l~lLKpGG~LV 232 (731)
.....||.|++|+|... . ....++... .++|||||+++
T Consensus 96 -----------------~~~~~fD~i~~~~~~~~--------~---------------~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 96 -----------------CLTGRFDLVFLDPPYAK--------E---------------TIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp -----------------HBCSCEEEEEECCSSHH--------H---------------HHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----------------hhcCCCCEEEECCCCCc--------c---------------hHHHHHHHHHhCCCcCCCcEEE
Confidence 11246999999988421 0 011223333 48999999999
Q ss_pred EEeCCCC
Q 004775 233 YSTCSMN 239 (731)
Q Consensus 233 YSTCSl~ 239 (731)
+++++-.
T Consensus 136 ~~~~~~~ 142 (177)
T 2esr_A 136 CETDKTV 142 (177)
T ss_dssp EEEETTC
T ss_pred EEECCcc
Confidence 9987754
No 91
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.96 E-value=4.5e-10 Score=114.66 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=97.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
++...++.+|||+|||+|..|..|++.+..- .+.+.|+|+|+++..+..++ .+ ..++.+...|+..+..+
T Consensus 76 ~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~-----~~~~~V~gvD~s~~~l~~a~----~~-~~~v~~~~gD~~~~~~l 145 (236)
T 2bm8_A 76 MLWELRPRTIVELGVYNGGSLAWFRDLTKIM-----GIDCQVIGIDRDLSRCQIPA----SD-MENITLHQGDCSDLTTF 145 (236)
T ss_dssp HHHHHCCSEEEEECCTTSHHHHHHHHHHHHT-----TCCCEEEEEESCCTTCCCCG----GG-CTTEEEEECCSSCSGGG
T ss_pred HHHhcCCCEEEEEeCCCCHHHHHHHHhhhhc-----CCCCEEEEEeCChHHHHHHh----cc-CCceEEEECcchhHHHH
Confidence 3444567899999999999999999874210 13589999999999877654 22 25788999988764110
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRI 231 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~-lLKpGG~L 231 (731)
. ......||+|++|..- . ...++|..+.+ +|||||+|
T Consensus 146 ~-----------------~~~~~~fD~I~~d~~~---------~----------------~~~~~l~~~~r~~LkpGG~l 183 (236)
T 2bm8_A 146 E-----------------HLREMAHPLIFIDNAH---------A----------------NTFNIMKWAVDHLLEEGDYF 183 (236)
T ss_dssp G-----------------GGSSSCSSEEEEESSC---------S----------------SHHHHHHHHHHHTCCTTCEE
T ss_pred H-----------------hhccCCCCEEEECCch---------H----------------hHHHHHHHHHHhhCCCCCEE
Confidence 0 0011369999997640 0 11347888886 99999999
Q ss_pred EEEe-CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 232 VYST-CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 232 VYST-CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
|++. |.+.+..+.+.+..+++.++..|+++..
T Consensus 184 v~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~ 216 (236)
T 2bm8_A 184 IIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDML 216 (236)
T ss_dssp EECSCHHHHHHHCHHHHHHHHHTTTTTEEEETT
T ss_pred EEEeCcccccccCHHHHHHHHHhCcccEEEcch
Confidence 9974 3444566777899999988756877543
No 92
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.95 E-value=1.2e-08 Score=106.67 Aligned_cols=121 Identities=16% Similarity=0.069 Sum_probs=91.6
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp 150 (731)
..++++++.+|||+|||+|..+..+++..+ ..|+++|+|+..+..+++++...+.. ++.+...|+..+
T Consensus 66 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 134 (302)
T 3hem_A 66 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYD----------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134 (302)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-
T ss_pred HHcCCCCcCEEEEeeccCcHHHHHHHHhCC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-
Confidence 345778999999999999999999988752 58999999999999999999998876 788888887653
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
...||+|++. +++..-|+.+ . ..-......++..+.++|||||+
T Consensus 135 -----------------------~~~fD~v~~~------~~~~~~~d~~------~-~~~~~~~~~~l~~~~~~LkpgG~ 178 (302)
T 3hem_A 135 -----------------------DEPVDRIVSL------GAFEHFADGA------G-DAGFERYDTFFKKFYNLTPDDGR 178 (302)
T ss_dssp -----------------------CCCCSEEEEE------SCGGGTTCCS------S-CCCTTHHHHHHHHHHHSSCTTCE
T ss_pred -----------------------CCCccEEEEc------chHHhcCccc------c-ccchhHHHHHHHHHHHhcCCCcE
Confidence 2679999974 2222222210 0 00012335789999999999999
Q ss_pred EEEEeCCCC
Q 004775 231 IVYSTCSMN 239 (731)
Q Consensus 231 LVYSTCSl~ 239 (731)
++.++.+..
T Consensus 179 l~i~~~~~~ 187 (302)
T 3hem_A 179 MLLHTITIP 187 (302)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 999887654
No 93
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.95 E-value=1.4e-08 Score=104.06 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=99.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~ 154 (731)
+.+|++|||+|||+|..++.++.. + +.+.|+|+|+++..+..+++|++++|.. ++.+...|+....
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~--------~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~---- 85 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM-G--------YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF---- 85 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-T--------CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC----
T ss_pred CCCCCEEEEECCchHHHHHHHHHh-C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----
Confidence 568999999999999999998775 1 3579999999999999999999999986 4889888876521
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|++ .|.| ..+-.+||..+...|+++|++|.|
T Consensus 86 -----------------~~~~~~D~Ivi----aGmG--------------------g~lI~~IL~~~~~~l~~~~~lIlq 124 (230)
T 3lec_A 86 -----------------EEADNIDTITI----CGMG--------------------GRLIADILNNDIDKLQHVKTLVLQ 124 (230)
T ss_dssp -----------------CGGGCCCEEEE----EEEC--------------------HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred -----------------ccccccCEEEE----eCCc--------------------hHHHHHHHHHHHHHhCcCCEEEEE
Confidence 11136999875 2333 234567899999999999999987
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
. ..++..|...|.++| |++++-
T Consensus 125 p-----~~~~~~lr~~L~~~G--f~i~~E 146 (230)
T 3lec_A 125 P-----NNREDDLRKWLAAND--FEIVAE 146 (230)
T ss_dssp E-----SSCHHHHHHHHHHTT--EEEEEE
T ss_pred C-----CCChHHHHHHHHHCC--CEEEEE
Confidence 5 246888899999876 555553
No 94
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.95 E-value=1e-09 Score=112.76 Aligned_cols=147 Identities=14% Similarity=0.190 Sum_probs=101.7
Q ss_pred hhhHHHHHHHhhcccccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC
Q 004775 41 NQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (731)
Q Consensus 41 ~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid 120 (731)
.+.+..+.++-. +...+....+.....+...++...++.+|||+|||+|..|..++..+.. .+.|+++|++
T Consensus 43 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~--------~~~v~~iD~s 113 (247)
T 1sui_A 43 HEAMKELREVTA-KHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPE--------DGKILAMDIN 113 (247)
T ss_dssp TTHHHHHHHHHH-TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCT--------TCEEEEEESC
T ss_pred CHHHHHHHHHHH-hcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCC--------CCEEEEEECC
Confidence 344555555422 1122233334444444445556677889999999999999999998642 5899999999
Q ss_pred HHHHHHHHHHHHHcCC-CceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004775 121 VQRCNLLIHQTKRMCT-ANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (731)
Q Consensus 121 ~~R~~~L~~n~kRlg~-~ni~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~ 198 (731)
+.++..+++++++.+. .++.+...|+..+ +.+. ........||.|++|+++.
T Consensus 114 ~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~---------------~~~~~~~~fD~V~~d~~~~----------- 167 (247)
T 1sui_A 114 KENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI---------------KDEKNHGSYDFIFVDADKD----------- 167 (247)
T ss_dssp CHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH---------------HSGGGTTCBSEEEECSCST-----------
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHH---------------hccCCCCCEEEEEEcCchH-----------
Confidence 9999999999999987 4688888887653 1100 0000125799999987521
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 199 ~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
....++..+.++|||||+|++..+
T Consensus 168 --------------~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 168 --------------NYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp --------------THHHHHHHHHHHBCTTCCEEEECT
T ss_pred --------------HHHHHHHHHHHhCCCCeEEEEecC
Confidence 113568888999999999998753
No 95
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.95 E-value=2.4e-09 Score=103.99 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-ecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT-NHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt-~~Da~~fp~~~~ 154 (731)
++++.+|||+|||+|..+..++..++........+.+.|+|+|+++.+ ...++.+. ..|....+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~- 87 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQ- 87 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHH-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHH-
Confidence 578999999999999999999988642100011123899999999842 23456666 66544321000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
..........||+|++|.++...|... .+ ......++..++..+.++|||||+++.+
T Consensus 88 ------------~~~~~~~~~~fD~V~~~~~~~~~~~~~--~~---------~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 88 ------------RILEVLPGRRADVILSDMAPNATGFRD--LD---------HDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp ------------HHHHHSGGGCEEEEEECCCCCCCSCHH--HH---------HHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------HHHHhcCCCCCcEEEeCCCCCCCCCcc--cC---------HHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 000001124799999998655544310 00 0122345578999999999999999998
Q ss_pred eCCCCCcCcHHHHHHHHHH
Q 004775 235 TCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~ 253 (731)
++.. ++...+...++.
T Consensus 145 ~~~~---~~~~~~~~~l~~ 160 (196)
T 2nyu_A 145 TWAG---SQSRRLQRRLTE 160 (196)
T ss_dssp ECCS---GGGHHHHHHHHH
T ss_pred ecCC---ccHHHHHHHHHH
Confidence 7643 333344455554
No 96
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.95 E-value=5e-09 Score=114.09 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=99.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..++... +.+.|+|+|+|+..+..++.|+++.|. .++.+.+.|+..++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~---------~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--- 282 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRR---------YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--- 282 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTT---------CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG---
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc---
Confidence 6789999999999999999988752 235899999999999999999999998 678999999877541
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....||.|++|||..- .......+..++.+++..+.++| ||.++|.
T Consensus 283 ------------------~~~~fD~Ii~npPyg~--------------r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i 328 (373)
T 3tm4_A 283 ------------------YVDSVDFAISNLPYGL--------------KIGKKSMIPDLYMKFFNELAKVL--EKRGVFI 328 (373)
T ss_dssp ------------------TCSCEEEEEEECCCC--------------------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred ------------------ccCCcCEEEECCCCCc--------------ccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 1257999999999521 01112345677788999999988 7899999
Q ss_pred eCCCCCcCcHHHHHHHHHHCC
Q 004775 235 TCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~ 255 (731)
||+ ...+...+.+.|
T Consensus 329 ~~~------~~~~~~~~~~~G 343 (373)
T 3tm4_A 329 TTE------KKAIEEAIAENG 343 (373)
T ss_dssp ESC------HHHHHHHHHHTT
T ss_pred ECC------HHHHHHHHHHcC
Confidence 883 455566777665
No 97
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.94 E-value=5.9e-10 Score=117.97 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=89.9
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt 142 (731)
+.......+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++++.+.+++.+.
T Consensus 27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-----------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~ 95 (299)
T 2h1r_A 27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-----------AKKVITIDIDSRMISEVKKRCLYEGYNNLEVY 95 (299)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-----------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC-
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 3333333445567889999999999999999998764 36899999999999999999988888888888
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcc--cccccchHHHHHHHHHH
Q 004775 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN--VGLGNGLHSLQVQIAMR 220 (731)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~--~~~~~~L~~lQ~~IL~r 220 (731)
+.|+..++. ..||+|++|+|+.... |.++.--. ......+.-.|. ..
T Consensus 96 ~~D~~~~~~-----------------------~~~D~Vv~n~py~~~~-----~~~~~ll~~~~~~~~~~l~~Q~---e~ 144 (299)
T 2h1r_A 96 EGDAIKTVF-----------------------PKFDVCTANIPYKISS-----PLIFKLISHRPLFKCAVLMFQK---EF 144 (299)
T ss_dssp ---CCSSCC-----------------------CCCSEEEEECCGGGHH-----HHHHHHHHCSSCCSEEEEEEEH---HH
T ss_pred ECchhhCCc-----------------------ccCCEEEEcCCccccc-----HHHHHHHhcCCccceeeehHHH---HH
Confidence 888766431 3699999999976432 11111000 000001111222 44
Q ss_pred HHhhccCCCEEEEEeCCC
Q 004775 221 GISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 221 Al~lLKpGG~LVYSTCSl 238 (731)
|.++++++|...|+|||.
T Consensus 145 a~rlla~~G~~~y~~ls~ 162 (299)
T 2h1r_A 145 AERMLANVGDSNYSRLTI 162 (299)
T ss_dssp HHHHTCCTTSTTCCHHHH
T ss_pred HHHHhcCCCCcchhHHHH
Confidence 677899999888988875
No 98
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.94 E-value=2.9e-09 Score=108.50 Aligned_cols=126 Identities=16% Similarity=0.055 Sum_probs=87.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc---CCCc---------------
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM---CTAN--------------- 138 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl---g~~n--------------- 138 (731)
.++.+|||+|||+|..+..++..+.. +...|+|+|+|+..++.++.++.+. +..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~-------~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRR-------SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 122 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGG-------GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhcc-------CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence 46789999999999999999887421 2478999999999999999888765 4322
Q ss_pred -----------eE-------------EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc
Q 004775 139 -----------LI-------------VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (731)
Q Consensus 139 -----------i~-------------vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk 194 (731)
+. +.++|+....... .......||.|+|++|......+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~----------------~~~~~~~fD~Iv~npp~~~~~~~-- 184 (250)
T 1o9g_A 123 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALS----------------AVLAGSAPDVVLTDLPYGERTHW-- 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH----------------HHHTTCCCSEEEEECCGGGSSSS--
T ss_pred cchhhhhhhhhhhhhccccccccccceeecccccccccc----------------cccCCCCceEEEeCCCeeccccc--
Confidence 44 6666654311000 00012479999999996543321
Q ss_pred ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 195 ~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.. ......+..++.++.++|||||+|+++.++.
T Consensus 185 --------~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 217 (250)
T 1o9g_A 185 --------EG---QVPGQPVAGLLRSLASALPAHAVIAVTDRSR 217 (250)
T ss_dssp --------SS---CCCHHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred --------cc---cccccHHHHHHHHHHHhcCCCcEEEEeCcch
Confidence 11 1223566789999999999999999976664
No 99
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.93 E-value=2.3e-09 Score=107.02 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=84.9
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHF 149 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-----~~ni~vt~~Da~~f 149 (731)
.++++.+|||+|||+|..+..+++.+... ..+.+.|+++|+++.+++.+++++++.+ ..++.+...|+...
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVL----ENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTT----TCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhccc----CCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 57899999999999999999999875310 0135799999999999999999999887 57888888887652
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
..- .......||+|+++.++.. ++..+.++|||||
T Consensus 153 ~~~-----------------~~~~~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG 187 (227)
T 2pbf_A 153 NEE-----------------EKKELGLFDAIHVGASASE----------------------------LPEILVDLLAENG 187 (227)
T ss_dssp CHH-----------------HHHHHCCEEEEEECSBBSS----------------------------CCHHHHHHEEEEE
T ss_pred ccc-----------------cCccCCCcCEEEECCchHH----------------------------HHHHHHHhcCCCc
Confidence 100 0011257999999877531 2355678999999
Q ss_pred EEEEEe
Q 004775 230 RIVYST 235 (731)
Q Consensus 230 ~LVYST 235 (731)
+|+.++
T Consensus 188 ~lv~~~ 193 (227)
T 2pbf_A 188 KLIIPI 193 (227)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 100
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.93 E-value=7.3e-09 Score=104.35 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=82.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+++.++.+|||+|||+|..+.+++...+ .+.|+|+|+++.++..++++++.. .++.+...|+......
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~- 137 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD---------KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEY- 137 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT---------TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGG-
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC---------CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccc-
Confidence 4567899999999999999999998753 479999999999999999887655 6788888887651100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.... ..||.|++|++- |+ ....+|..+.++|||||+++.
T Consensus 138 ----------------~~~~-~~~D~v~~~~~~---------~~---------------~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 138 ----------------ANIV-EKVDVIYEDVAQ---------PN---------------QAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp ----------------TTTS-CCEEEEEECCCS---------TT---------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------cccC-ccEEEEEEecCC---------hh---------------HHHHHHHHHHHhCCCCcEEEE
Confidence 0011 579999987651 11 113468889999999999998
Q ss_pred E
Q 004775 234 S 234 (731)
Q Consensus 234 S 234 (731)
+
T Consensus 177 ~ 177 (230)
T 1fbn_A 177 A 177 (230)
T ss_dssp E
T ss_pred E
Confidence 6
No 101
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.92 E-value=2.4e-09 Score=102.93 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=84.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~ 154 (731)
..++.+|||+|||+|..+..++.. +...|+|+|+++..++.++++++..+. .++.+.+.|+..+...
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-- 109 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR----------GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ-- 109 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH--
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH--
Confidence 357889999999999999987762 246899999999999999999999886 5788888887653110
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.......||.|++|+|.. .+ . .... .+.+ .+.++|||||+++++
T Consensus 110 ---------------~~~~~~~fD~i~~~~~~~-~~----~--------------~~~~-~~~l-~~~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 110 ---------------FYEEKLQFDLVLLDPPYA-KQ----E--------------IVSQ-LEKM-LERQLLTNEAVIVCE 153 (187)
T ss_dssp ---------------HHHTTCCEEEEEECCCGG-GC----C--------------HHHH-HHHH-HHTTCEEEEEEEEEE
T ss_pred ---------------HHhcCCCCCEEEECCCCC-ch----h--------------HHHH-HHHH-HHhcccCCCCEEEEE
Confidence 001135799999998832 01 0 0011 1112 248899999999999
Q ss_pred eCCCCC
Q 004775 235 TCSMNP 240 (731)
Q Consensus 235 TCSl~p 240 (731)
+|+-..
T Consensus 154 ~~~~~~ 159 (187)
T 2fhp_A 154 TDKTVK 159 (187)
T ss_dssp EETTCC
T ss_pred eCCccc
Confidence 888643
No 102
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.92 E-value=9.1e-09 Score=103.62 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=86.8
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~f 149 (731)
...+++.++.+|||+|||+|..+..++.. .+.|+++|+++.+++.++++++..+. .++.+...|+...
T Consensus 84 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 152 (248)
T 2yvl_A 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEV-----------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA 152 (248)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred HHhcCCCCCCEEEEeCCCccHHHHHHHHh-----------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc
Confidence 34567889999999999999999999886 26899999999999999999998887 6788887776552
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
. .....||.|++|+| +| ..++..+.++|||||
T Consensus 153 ~---------------------~~~~~~D~v~~~~~---------~~------------------~~~l~~~~~~L~~gG 184 (248)
T 2yvl_A 153 E---------------------VPEGIFHAAFVDVR---------EP------------------WHYLEKVHKSLMEGA 184 (248)
T ss_dssp C---------------------CCTTCBSEEEECSS---------CG------------------GGGHHHHHHHBCTTC
T ss_pred c---------------------cCCCcccEEEECCc---------CH------------------HHHHHHHHHHcCCCC
Confidence 1 01257999999876 11 124677889999999
Q ss_pred EEEEEeCCC
Q 004775 230 RIVYSTCSM 238 (731)
Q Consensus 230 ~LVYSTCSl 238 (731)
+++.++.+.
T Consensus 185 ~l~~~~~~~ 193 (248)
T 2yvl_A 185 PVGFLLPTA 193 (248)
T ss_dssp EEEEEESSH
T ss_pred EEEEEeCCH
Confidence 999886544
No 103
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.92 E-value=2.9e-09 Score=100.03 Aligned_cols=139 Identities=20% Similarity=0.105 Sum_probs=93.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
++++.+|||+|||+|..+..+++.++. .+.|+++|+++ .+. ..++.+...|+..++....
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~--------~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~- 79 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGG--------KGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKA- 79 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCT--------TCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHH-
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCC--------CCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhh-
Confidence 578999999999999999999987632 47999999998 432 2567777777665321000
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.........||.|++|+|+...+... . .....+.++..++..+.++|+|||+++.++
T Consensus 80 ------------~~~~~~~~~~D~i~~~~~~~~~~~~~--~---------~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 80 ------------LLERVGDSKVQVVMSDMAPNMSGTPA--V---------DIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp ------------HHHHHTTCCEEEEEECCCCCCCSCHH--H---------HHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------hhccCCCCceeEEEECCCccccCCCc--c---------chHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 00001235799999999987666410 0 011234456789999999999999999876
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
... ++...+...++.+ +..+.+
T Consensus 137 ~~~---~~~~~~~~~~~~~---~~~~~~ 158 (180)
T 1ej0_A 137 FQG---EGFDEYLREIRSL---FTKVKV 158 (180)
T ss_dssp ESS---TTHHHHHHHHHHH---EEEEEE
T ss_pred ecC---CcHHHHHHHHHHh---hhhEEe
Confidence 543 4555566666653 444443
No 104
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.91 E-value=7.3e-09 Score=104.91 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=85.5
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+.+.++.+|||+|||+|..+..++... ...|+++|+++..+..+++++... .++.+...|+..+|.
T Consensus 50 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~- 116 (266)
T 3ujc_A 50 DIELNENSKVLDIGSGLGGGCMYINEKY----------GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF- 116 (266)
T ss_dssp TCCCCTTCEEEEETCTTSHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC-
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC-
Confidence 3467899999999999999999999875 258999999999999887765443 678888888876531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++.. ++.+-+ ......+|..+.++|||||+++
T Consensus 117 --------------------~~~~fD~v~~~~------~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~ 156 (266)
T 3ujc_A 117 --------------------PENNFDLIYSRD------AILALS--------------LENKNKLFQKCYKWLKPTGTLL 156 (266)
T ss_dssp --------------------CTTCEEEEEEES------CGGGSC--------------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCcEEEEeHHH------HHHhcC--------------hHHHHHHHHHHHHHcCCCCEEE
Confidence 136899999732 111110 1334678999999999999999
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
.++...
T Consensus 157 ~~~~~~ 162 (266)
T 3ujc_A 157 ITDYCA 162 (266)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 987543
No 105
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.91 E-value=3.5e-09 Score=107.94 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
...+.+.++.+|||+|||+|..+..+++. .+.|+++|+++..+..++++++..+.+++.+...|+..+|
T Consensus 30 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 30 MQIAALKGNEEVLDVATGGGHVANAFAPF-----------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98 (260)
T ss_dssp HHHHTCCSCCEEEEETCTTCHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC
T ss_pred HHHhCCCCCCEEEEEeCCCCHHHHHHHHh-----------CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC
Confidence 33456789999999999999998888664 2489999999999999999998888888999998887654
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||.|++... +. .| + ....+|.++.++|||||+
T Consensus 99 ~---------------------~~~~fD~V~~~~~------l~-------~~-~--------d~~~~l~~~~r~LkpgG~ 135 (260)
T 1vl5_A 99 F---------------------TDERFHIVTCRIA------AH-------HF-P--------NPASFVSEAYRVLKKGGQ 135 (260)
T ss_dssp S---------------------CTTCEEEEEEESC------GG-------GC-S--------CHHHHHHHHHHHEEEEEE
T ss_pred C---------------------CCCCEEEEEEhhh------hH-------hc-C--------CHHHHHHHHHHHcCCCCE
Confidence 1 1267999997421 11 11 1 113678999999999999
Q ss_pred EEEEeC
Q 004775 231 IVYSTC 236 (731)
Q Consensus 231 LVYSTC 236 (731)
|+.++.
T Consensus 136 l~~~~~ 141 (260)
T 1vl5_A 136 LLLVDN 141 (260)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 998743
No 106
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.90 E-value=3e-09 Score=118.40 Aligned_cols=171 Identities=11% Similarity=0.047 Sum_probs=112.6
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCC----CCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG----ALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~----~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
..|.++--...+.+.+.++++.++.+|||.|||+|+.+.++++.+....... ..+...|+|+|+++..+.+++.|+
T Consensus 149 ~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl 228 (445)
T 2okc_A 149 GAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 228 (445)
T ss_dssp CCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence 3566554444444555667889999999999999999999998764210000 001257999999999999999998
Q ss_pred HHcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004775 132 KRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (731)
Q Consensus 132 kRlg~~--ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~ 209 (731)
...|.. ++.+.++|+...+. ...||.|+++||.++........ .+.... ..
T Consensus 229 ~l~g~~~~~~~i~~gD~l~~~~----------------------~~~fD~Iv~NPPf~~~~~~~~~~---~~~~~~--~~ 281 (445)
T 2okc_A 229 YLHGIGTDRSPIVCEDSLEKEP----------------------STLVDVILANPPFGTRPAGSVDI---NRPDFY--VE 281 (445)
T ss_dssp HHTTCCSSCCSEEECCTTTSCC----------------------SSCEEEEEECCCSSCCCTTCCCC---CCTTSS--SC
T ss_pred HHhCCCcCCCCEeeCCCCCCcc----------------------cCCcCEEEECCCCCCcccccchh---hHhhcC--CC
Confidence 887764 56667777654321 13799999999999866432210 000000 01
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEEEeCC--CCCcCcHHHHHH-HHHH
Q 004775 210 LHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAE-ILRK 253 (731)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGG~LVYSTCS--l~p~ENEaVV~~-~L~~ 253 (731)
-...+...+.+++++||+||++++.++. +.....+..+.+ +++.
T Consensus 282 ~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~ 328 (445)
T 2okc_A 282 TKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD 328 (445)
T ss_dssp CSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhc
Confidence 1224678899999999999999998864 333333444554 5554
No 107
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.90 E-value=7.5e-09 Score=113.06 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=91.7
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEeccc
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA---NLIVTNHEA 146 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~---ni~vt~~Da 146 (731)
....+...++.+|||+|||+|..+..++... |...|+++|+|+..++.++++++.++.. ++.+...|+
T Consensus 214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~---------p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~ 284 (375)
T 4dcm_A 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284 (375)
T ss_dssp HHHTCCCSCCSEEEEETCTTCHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST
T ss_pred HHHhCcccCCCeEEEEeCcchHHHHHHHHHC---------CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh
Confidence 3445566778999999999999999998863 3579999999999999999999998865 466777776
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
... .....||.|++|+|......+ .. ....+++..+.++||
T Consensus 285 ~~~----------------------~~~~~fD~Ii~nppfh~~~~~-----------~~------~~~~~~l~~~~~~Lk 325 (375)
T 4dcm_A 285 LSG----------------------VEPFRFNAVLCNPPFHQQHAL-----------TD------NVAWEMFHHARRCLK 325 (375)
T ss_dssp TTT----------------------CCTTCEEEEEECCCC------------------C------CHHHHHHHHHHHHEE
T ss_pred hcc----------------------CCCCCeeEEEECCCcccCccc-----------CH------HHHHHHHHHHHHhCC
Confidence 541 112579999999995321111 00 122368999999999
Q ss_pred CCCEEEEEeCCCCCc
Q 004775 227 VGGRIVYSTCSMNPV 241 (731)
Q Consensus 227 pGG~LVYSTCSl~p~ 241 (731)
|||++++++-+..+.
T Consensus 326 pgG~l~iv~n~~~~~ 340 (375)
T 4dcm_A 326 INGELYIVANRHLDY 340 (375)
T ss_dssp EEEEEEEEEETTSCH
T ss_pred CCcEEEEEEECCcCH
Confidence 999999986665443
No 108
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.90 E-value=1e-08 Score=113.82 Aligned_cols=88 Identities=22% Similarity=0.180 Sum_probs=71.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+++.++.+|||+|||+|..+..|+.. .+.|+|+|+++..++.+++|+++++..|+.+.+.|+..+..-
T Consensus 282 l~~~~~~~VLDlgcG~G~~~~~la~~-----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~- 349 (433)
T 1uwv_A 282 LDVQPEDRVLDLFCGMGNFTLPLATQ-----------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK- 349 (433)
T ss_dssp HTCCTTCEEEEESCTTTTTHHHHHTT-----------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-
T ss_pred hcCCCCCEEEECCCCCCHHHHHHHhh-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-
Confidence 46678999999999999999998764 368999999999999999999999988999999998763210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
.......||.|++|||++|.
T Consensus 350 ----------------~~~~~~~fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 350 ----------------QPWAKNGFDKVLLDPARAGA 369 (433)
T ss_dssp ----------------SGGGTTCCSEEEECCCTTCC
T ss_pred ----------------hhhhcCCCCEEEECCCCccH
Confidence 00122579999999997653
No 109
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.90 E-value=2.4e-08 Score=103.22 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=98.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+.+|++|||+|||+|..++.|+..- +.+.|+|+|+++..+..+++|++++|..+ +.+...|+....
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~---- 85 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQ---------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI---- 85 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC----
T ss_pred CCCCCEEEEECCccHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc----
Confidence 5689999999999999999887751 35799999999999999999999999865 888888875521
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|++ .|.| ..+-.+||..+...|+++|++|.+
T Consensus 86 -----------------~~~~~~D~Ivi----agmG--------------------g~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 86 -----------------EKKDAIDTIVI----AGMG--------------------GTLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp -----------------CGGGCCCEEEE----EEEC--------------------HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred -----------------CccccccEEEE----eCCc--------------------hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 01135999885 2333 234567899999999999999987
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
. ......|.+.|.+.| |.+++
T Consensus 125 ~-----~~~~~~lr~~L~~~G--f~i~~ 145 (244)
T 3gnl_A 125 P-----NIAAWQLREWSEQNN--WLITS 145 (244)
T ss_dssp E-----SSCHHHHHHHHHHHT--EEEEE
T ss_pred c-----CCChHHHHHHHHHCC--CEEEE
Confidence 5 347888889998876 55544
No 110
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.90 E-value=1.3e-08 Score=101.84 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..+++.. |...|+++|+++..+..++.++...+ ++.+...|+..++.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~---- 106 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKY---------PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDF---- 106 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCC----
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCC----
Confidence 5688999999999999999998874 35799999999999999888765544 78888888876531
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
. ..||.|++... +..-++ ....++|.++.++|||||+++.++
T Consensus 107 -----------------~-~~fD~v~~~~~------l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 107 -----------------E-EKYDMVVSALS------IHHLED--------------EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp -----------------C-SCEEEEEEESC------GGGSCH--------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------C-CCceEEEEeCc------cccCCH--------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1 57999998432 111111 122468999999999999999987
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
....
T Consensus 149 ~~~~ 152 (234)
T 3dtn_A 149 LVHG 152 (234)
T ss_dssp ECBC
T ss_pred ecCC
Confidence 6653
No 111
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.89 E-value=9.1e-10 Score=117.11 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=71.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC----CHHHHHHHHHHHHHcCCCceEEEec-ccccCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL----DVQRCNLLIHQTKRMCTANLIVTNH-EAQHFP 150 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi----d~~R~~~L~~n~kRlg~~ni~vt~~-Da~~fp 150 (731)
++||.+|||+|||||++|..+++. |.|+|+|+ +..++..+ ..++++.+++.+... |+..++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~------------~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~ 145 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL------------KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP 145 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS------------TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc------------CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC
Confidence 578999999999999999988763 46999998 44332111 012223356777766 655432
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
...||+|+||.+|+ .|.. .. -+..+..+|..+.++|||||+
T Consensus 146 -----------------------~~~fD~V~sd~~~~-~g~~----------~~-----d~~~~l~~L~~~~~~LkpGG~ 186 (305)
T 2p41_A 146 -----------------------PERCDTLLCDIGES-SPNP----------TV-----EAGRTLRVLNLVENWLSNNTQ 186 (305)
T ss_dssp -----------------------CCCCSEEEECCCCC-CSSH----------HH-----HHHHHHHHHHHHHHHCCTTCE
T ss_pred -----------------------cCCCCEEEECCccc-cCcc----------hh-----hHHHHHHHHHHHHHHhCCCCE
Confidence 25799999999987 5531 00 011123578888899999998
Q ss_pred EEEE
Q 004775 231 IVYS 234 (731)
Q Consensus 231 LVYS 234 (731)
+|..
T Consensus 187 ~v~k 190 (305)
T 2p41_A 187 FCVK 190 (305)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 112
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.89 E-value=1.2e-08 Score=101.11 Aligned_cols=144 Identities=10% Similarity=-0.029 Sum_probs=98.3
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEecccccC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-----NLIVTNHEAQHF 149 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-----ni~vt~~Da~~f 149 (731)
...++.+|||+|||+|..+..+++.. +...|+++|+|+..+..+++++...+.. ++.+...|+...
T Consensus 26 ~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 26 KSVNAKKVIDLGCGEGNLLSLLLKDK---------SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHTTCCEEEEETCTTCHHHHHHHTST---------TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred hhcCCCEEEEecCCCCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 34678899999999999998887642 2469999999999999999988766654 688888887443
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+ .....||.|+|.- ++..-++ ....++|..+.++|||||
T Consensus 97 ~---------------------~~~~~fD~V~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 97 D---------------------KRFSGYDAATVIE------VIEHLDE--------------NRLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp C---------------------GGGTTCSEEEEES------CGGGCCH--------------HHHHHHHHHHHTTTCCSE
T ss_pred c---------------------cccCCCCEEEEHH------HHHhCCH--------------HHHHHHHHHHHHhhCCCE
Confidence 2 1236899999732 2211111 123578999999999999
Q ss_pred EEEEEeCCC----------------------CCcCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004775 230 RIVYSTCSM----------------------NPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (731)
Q Consensus 230 ~LVYSTCSl----------------------~p~ENEaVV~~~L~~~~g~~elvd~s~~lP 268 (731)
.++.+.+.- .+.|=..-+..+++++|-.+++..+....|
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~ 196 (219)
T 3jwg_A 136 VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD 196 (219)
T ss_dssp EEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCT
T ss_pred EEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccc
Confidence 777665542 111222233377778776666666654444
No 113
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.88 E-value=2e-09 Score=117.58 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=100.5
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+++..++.+|||+|||+|+.+..+++.+.. ...|+|+|+++..+..+ .++.+.+.|+..++.
T Consensus 33 ~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~--------~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~ 95 (421)
T 2ih2_A 33 SLAEAPRGGRVLEPACAHGPFLRAFREAHGT--------AYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP 95 (421)
T ss_dssp HHCCCCTTCEEEEETCTTCHHHHHHHHHHCS--------CSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC
T ss_pred HhhccCCCCEEEECCCCChHHHHHHHHHhCC--------CCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCc
Confidence 3445556779999999999999999887532 46899999999987654 467788887765321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc-----Chhhhhhccc--ccccchHHHHHHHHHHHHhh
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-----APDIWRKWNV--GLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-----~pd~~~~w~~--~~~~~L~~lQ~~IL~rAl~l 224 (731)
...||+|+++||+...+...+ ..+....+.. ....+...++..++.+++++
T Consensus 96 ----------------------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~ 153 (421)
T 2ih2_A 96 ----------------------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL 153 (421)
T ss_dssp ----------------------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH
T ss_pred ----------------------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHH
Confidence 257999999999988765221 1221111110 11112345677899999999
Q ss_pred ccCCCEEEEEeCC--CCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 225 LKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 225 LKpGG~LVYSTCS--l~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
|++||++++.+++ ++....+. +.+.|.+.+. ..++.+
T Consensus 154 Lk~~G~~~~i~p~~~l~~~~~~~-lr~~l~~~~~-~~i~~l 192 (421)
T 2ih2_A 154 LKPGGVLVFVVPATWLVLEDFAL-LREFLAREGK-TSVYYL 192 (421)
T ss_dssp EEEEEEEEEEEEGGGGTCGGGHH-HHHHHHHHSE-EEEEEE
T ss_pred hCCCCEEEEEEChHHhcCccHHH-HHHHHHhcCC-eEEEEC
Confidence 9999999998876 33333444 4555554432 455544
No 114
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.88 E-value=4.6e-09 Score=99.22 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=82.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. + . .|+|+|+|+..++.++++++..+. ++.+.+.|+..+...
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~-~---------~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---- 103 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASE-G---------W-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPE---- 103 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT-T---------C-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHH----
T ss_pred cCCCeEEEeCCCcCHHHHHHHHC-C---------C-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHh----
Confidence 37889999999999999988764 1 2 399999999999999999998887 788888887652100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
......+||.|++|+|.. +.. + ..... +.+ .++|||||+++++++
T Consensus 104 -------------~~~~~~~~D~i~~~~~~~--~~~---~---------------~~~~~-~~~-~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 104 -------------AKAQGERFTVAFMAPPYA--MDL---A---------------ALFGE-LLA-SGLVEAGGLYVLQHP 148 (171)
T ss_dssp -------------HHHTTCCEEEEEECCCTT--SCT---T---------------HHHHH-HHH-HTCEEEEEEEEEEEE
T ss_pred -------------hhccCCceEEEEECCCCc--hhH---H---------------HHHHH-HHh-hcccCCCcEEEEEeC
Confidence 001123799999999864 210 1 11111 222 589999999999988
Q ss_pred CCCCcC
Q 004775 237 SMNPVE 242 (731)
Q Consensus 237 Sl~p~E 242 (731)
+.....
T Consensus 149 ~~~~~~ 154 (171)
T 1ws6_A 149 KDLYLP 154 (171)
T ss_dssp TTSCCT
T ss_pred CccCCc
Confidence 765443
No 115
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.87 E-value=3.6e-09 Score=106.15 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHF 149 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-----~~ni~vt~~Da~~f 149 (731)
.++++++|||+|||+|..|..+++.++.. +..+.+.|+++|+++..+..+++++.+.+ ..++.+...|+...
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 157 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAK---GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG 157 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHS---CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccc---cCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC
Confidence 57899999999999999999999976520 00123699999999999999999998876 56888888887641
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
. .....||+|+++.++.. ++..+.++|||||
T Consensus 158 ~---------------------~~~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG 188 (227)
T 1r18_A 158 Y---------------------PPNAPYNAIHVGAAAPD----------------------------TPTELINQLASGG 188 (227)
T ss_dssp C---------------------GGGCSEEEEEECSCBSS----------------------------CCHHHHHTEEEEE
T ss_pred C---------------------CcCCCccEEEECCchHH----------------------------HHHHHHHHhcCCC
Confidence 0 01257999999877421 1245678999999
Q ss_pred EEEEEeC
Q 004775 230 RIVYSTC 236 (731)
Q Consensus 230 ~LVYSTC 236 (731)
+||.++-
T Consensus 189 ~lvi~~~ 195 (227)
T 1r18_A 189 RLIVPVG 195 (227)
T ss_dssp EEEEEES
T ss_pred EEEEEEe
Confidence 9998854
No 116
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.87 E-value=9.6e-09 Score=105.74 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=94.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..++.. .. .|+|+|+|+..+..+++++++++.. +.+...|+...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~----------g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~------ 179 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL----------GG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA------ 179 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT----------TC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH------
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh----------CC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc------
Confidence 578999999999999998887653 13 8999999999999999999988876 67776665431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....||.|+++.+. .....++..+.++|||||+++.|.
T Consensus 180 ----------------~~~~~fD~Vv~n~~~-------------------------~~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 180 ----------------LPFGPFDLLVANLYA-------------------------ELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ----------------GGGCCEEEEEEECCH-------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----------------CcCCCCCEEEECCcH-------------------------HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 112579999986541 112568899999999999999986
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
... +....+.+++++.| |+++.+
T Consensus 219 ~~~---~~~~~v~~~l~~~G--f~~~~~ 241 (254)
T 2nxc_A 219 ILK---DRAPLVREAMAGAG--FRPLEE 241 (254)
T ss_dssp EEG---GGHHHHHHHHHHTT--CEEEEE
T ss_pred ecc---CCHHHHHHHHHHCC--CEEEEE
Confidence 543 45677788888876 555554
No 117
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.87 E-value=2.8e-08 Score=101.59 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=87.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~ 151 (731)
.+.+.++.+|||+|||+|..+..+++.. ...|+++|+++..+..+++++...+.. ++.+...|+..+|.
T Consensus 56 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 56 LLDVRSGDRVLDVGCGIGKPAVRLATAR----------DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HSCCCTTCEEEEESCTTSHHHHHHHHHS----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 4567899999999999999999998763 368999999999999999999888864 68888888776431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....||+|++-- ++..-++ ...+|..+.++|||||++
T Consensus 126 ---------------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l 162 (273)
T 3bus_A 126 ---------------------EDASFDAVWALE------SLHHMPD----------------RGRALREMARVLRPGGTV 162 (273)
T ss_dssp ---------------------CTTCEEEEEEES------CTTTSSC----------------HHHHHHHHHTTEEEEEEE
T ss_pred ---------------------CCCCccEEEEec------hhhhCCC----------------HHHHHHHHHHHcCCCeEE
Confidence 126799999732 1111111 146899999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+.++...
T Consensus 163 ~i~~~~~ 169 (273)
T 3bus_A 163 AIADFVL 169 (273)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 9987543
No 118
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.87 E-value=1.1e-08 Score=101.23 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=84.7
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
..+.+.++.+|||+|||+|..+..++...+ +.+.|+++|+++.++..+++++...+..++.+...|+....
T Consensus 71 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 141 (215)
T 2yxe_A 71 ELLDLKPGMKVLEIGTGCGYHAAVTAEIVG--------EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY- 141 (215)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC-
T ss_pred HhhCCCCCCEEEEECCCccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 345778999999999999999999998763 24799999999999999999999888888888888764311
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||+|+++.++.. - ...+.++|||||+|
T Consensus 142 --------------------~~~~~fD~v~~~~~~~~------~----------------------~~~~~~~L~pgG~l 173 (215)
T 2yxe_A 142 --------------------EPLAPYDRIYTTAAGPK------I----------------------PEPLIRQLKDGGKL 173 (215)
T ss_dssp --------------------GGGCCEEEEEESSBBSS------C----------------------CHHHHHTEEEEEEE
T ss_pred --------------------CCCCCeeEEEECCchHH------H----------------------HHHHHHHcCCCcEE
Confidence 01257999998754211 0 12567899999999
Q ss_pred EEEeCC
Q 004775 232 VYSTCS 237 (731)
Q Consensus 232 VYSTCS 237 (731)
+.++.+
T Consensus 174 v~~~~~ 179 (215)
T 2yxe_A 174 LMPVGR 179 (215)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 998543
No 119
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.87 E-value=1.9e-08 Score=103.92 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=85.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~ 151 (731)
.+++.++.+|||+|||+|..+..+++..+ ..|+++|+++..+..+++++++.+. .++.+...|+..+|
T Consensus 59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 127 (287)
T 1kpg_A 59 KLGLQPGMTLLDVGCGWGATMMRAVEKYD----------VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 127 (287)
T ss_dssp TTTCCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HcCCCCcCEEEEECCcccHHHHHHHHHcC----------CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 35678999999999999999999986642 4899999999999999999888776 47888888775532
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
..||+|++.- ++.+-+ . .....+|..+.++|||||++
T Consensus 128 -----------------------~~fD~v~~~~------~l~~~~-------~-------~~~~~~l~~~~~~LkpgG~l 164 (287)
T 1kpg_A 128 -----------------------EPVDRIVSIG------AFEHFG-------H-------ERYDAFFSLAHRLLPADGVM 164 (287)
T ss_dssp -----------------------CCCSEEEEES------CGGGTC-------T-------TTHHHHHHHHHHHSCTTCEE
T ss_pred -----------------------CCeeEEEEeC------chhhcC-------h-------HHHHHHHHHHHHhcCCCCEE
Confidence 5699999731 221110 0 12356789999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+.++...
T Consensus 165 ~~~~~~~ 171 (287)
T 1kpg_A 165 LLHTITG 171 (287)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 9987654
No 120
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.86 E-value=3.6e-08 Score=96.32 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=81.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++ +|||+|||+|..+..++.. ...|+++|+++..+..+++++...+. ++.+...|+..++
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----- 89 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-----------GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFD----- 89 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-----------TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBS-----
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-----------CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcC-----
Confidence 5677 9999999999998887653 25899999999999999999887776 6788888776643
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....||.|++.. ..+ -......+|..+.++|||||+++.++
T Consensus 90 ----------------~~~~~fD~v~~~~-----~~~-----------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 90 ----------------IVADAWEGIVSIF-----CHL-----------------PSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp ----------------CCTTTCSEEEEEC-----CCC-----------------CHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred ----------------CCcCCccEEEEEh-----hcC-----------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1125799999721 110 01234678999999999999999997
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
.+.
T Consensus 132 ~~~ 134 (202)
T 2kw5_A 132 FAP 134 (202)
T ss_dssp ECT
T ss_pred ecc
Confidence 653
No 121
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.85 E-value=9.6e-09 Score=112.51 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=90.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. ...|+++|+|+..++.+++++..++.. +.+...|+..++.
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-----------g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~----- 294 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-----------GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALT----- 294 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-----------TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSC-----
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccc-----
Confidence 47889999999999999998875 258999999999999999999988765 6777888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
....||.|++++|....+.. ......+++..+.++|||||+++++++
T Consensus 295 ----------------~~~~fD~Ii~npp~~~~~~~-----------------~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 295 ----------------EEARFDIIVTNPPFHVGGAV-----------------ILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp ----------------TTCCEEEEEECCCCCTTCSS-----------------CCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----------------cCCCeEEEEECCchhhcccc-----------------cHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 12689999999997543221 123456789999999999999999988
Q ss_pred CCCC
Q 004775 237 SMNP 240 (731)
Q Consensus 237 Sl~p 240 (731)
...+
T Consensus 342 ~~l~ 345 (381)
T 3dmg_A 342 PFLK 345 (381)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7653
No 122
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.84 E-value=1.8e-08 Score=98.69 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=86.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~ 152 (731)
+.+.++ +|||+|||+|..+..+++. . ...|+++|+++..+..++++++..+.. ++.+...|+..++.
T Consensus 40 ~~~~~~-~vLdiG~G~G~~~~~l~~~-~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~- 107 (219)
T 3dlc_A 40 FGITAG-TCIDIGSGPGALSIALAKQ-S---------DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI- 107 (219)
T ss_dssp HCCCEE-EEEEETCTTSHHHHHHHHH-S---------EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-
T ss_pred cCCCCC-EEEEECCCCCHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-
Confidence 455666 9999999999999999886 1 479999999999999999999988864 78888888876541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++... +.. + ....++|..+.++|||||+++
T Consensus 108 --------------------~~~~~D~v~~~~~------l~~-------~---------~~~~~~l~~~~~~L~pgG~l~ 145 (219)
T 3dlc_A 108 --------------------EDNYADLIVSRGS------VFF-------W---------EDVATAFREIYRILKSGGKTY 145 (219)
T ss_dssp --------------------CTTCEEEEEEESC------GGG-------C---------SCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CcccccEEEECch------Hhh-------c---------cCHHHHHHHHHHhCCCCCEEE
Confidence 1268999998432 111 0 112468999999999999999
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
.++...
T Consensus 146 ~~~~~~ 151 (219)
T 3dlc_A 146 IGGGFG 151 (219)
T ss_dssp EEECCS
T ss_pred EEeccC
Confidence 986444
No 123
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.84 E-value=4.9e-08 Score=101.35 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=86.7
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~ 153 (731)
.+.++.+|||+|||+|..+..+++.. ...|+++|+++..+..++++++..+. .++.+...|+..+|.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 146 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKF----------GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC-- 146 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--
Confidence 67899999999999999999998875 24899999999999999999988887 468888888776541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++.- ++.+-++ ...+|..+.++|||||+|+.
T Consensus 147 -------------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~ 185 (297)
T 2o57_A 147 -------------------EDNSYDFIWSQD------AFLHSPD----------------KLKVFQECARVLKPRGVMAI 185 (297)
T ss_dssp -------------------CTTCEEEEEEES------CGGGCSC----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCEeEEEecc------hhhhcCC----------------HHHHHHHHHHHcCCCeEEEE
Confidence 126799999731 1111111 25689999999999999999
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
++..
T Consensus 186 ~~~~ 189 (297)
T 2o57_A 186 TDPM 189 (297)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8754
No 124
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.83 E-value=7.8e-08 Score=97.86 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=98.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccccc-CCCcccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQH-FPGCRAN 155 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~-fp~~~~~ 155 (731)
++.+|||+|||+|..+..++.... .+.|+|+|+++..++.+++++++++..+ +.+.+.|+.. +... +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~- 133 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN---------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-L- 133 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH---------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT-S-
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhh-h-
Confidence 678999999999999999988753 3789999999999999999999998765 8898888765 2110 0
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCC-cccc--Chhh-----hhhcccccc-----cchHHHHHHHHHHHH
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG-TLRK--APDI-----WRKWNVGLG-----NGLHSLQVQIAMRGI 222 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG-tlrk--~pd~-----~~~w~~~~~-----~~L~~lQ~~IL~rAl 222 (731)
.......||.|+++||+...+ .+.. .++. +..+-.... .+...+...++..+.
T Consensus 134 --------------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~ 199 (254)
T 2h00_A 134 --------------KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL 199 (254)
T ss_dssp --------------TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH
T ss_pred --------------hcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH
Confidence 000014799999999998765 1110 0100 000000000 012233455777788
Q ss_pred hhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCC-cEEEEec
Q 004775 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDV 263 (731)
Q Consensus 223 ~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g-~~elvd~ 263 (731)
.+++++|.++.. +....+...+.++|++.|. .++..+.
T Consensus 200 ~~l~~~g~~~~~---~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 200 QLKKRLRWYSCM---LGKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp HHGGGBSCEEEE---ESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred hcccceEEEEEC---CCChhHHHHHHHHHHHcCCCceEEEEE
Confidence 889999976533 3344554567778888763 2444443
No 125
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.83 E-value=3.6e-08 Score=97.70 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=83.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEecccccCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-----NLIVTNHEAQHFP 150 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-----ni~vt~~Da~~fp 150 (731)
++++.+|||+|||+|..+..++.. ...|+++|+++..+..++.++...+.. ++.+...|+..++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-----------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS 96 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-----------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC
Confidence 468999999999999999988775 258999999999999999887766652 5677778776643
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
. ....||.|++... +...++ .....++|..+.++|||||+
T Consensus 97 ~---------------------~~~~~D~v~~~~~------l~~~~~-------------~~~~~~~l~~~~~~L~pgG~ 136 (235)
T 3sm3_A 97 F---------------------HDSSFDFAVMQAF------LTSVPD-------------PKERSRIIKEVFRVLKPGAY 136 (235)
T ss_dssp S---------------------CTTCEEEEEEESC------GGGCCC-------------HHHHHHHHHHHHHHEEEEEE
T ss_pred C---------------------CCCceeEEEEcch------hhcCCC-------------HHHHHHHHHHHHHHcCCCeE
Confidence 1 1367999998422 211111 11234689999999999999
Q ss_pred EEEEeCCC
Q 004775 231 IVYSTCSM 238 (731)
Q Consensus 231 LVYSTCSl 238 (731)
|+.++...
T Consensus 137 l~~~~~~~ 144 (235)
T 3sm3_A 137 LYLVEFGQ 144 (235)
T ss_dssp EEEEEEBC
T ss_pred EEEEECCc
Confidence 99987654
No 126
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.83 E-value=1.6e-08 Score=99.80 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=97.4
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.++...++.+|||+|||+|..+..+++. ...|+|+|+++..+..+++++... .++.+...|+..++
T Consensus 45 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~- 110 (216)
T 3ofk_A 45 LSLSSGAVSNGLEIGCAAGAFTEKLAPH-----------CKRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFS- 110 (216)
T ss_dssp HHTTTSSEEEEEEECCTTSHHHHHHGGG-----------EEEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCC-
T ss_pred HHcccCCCCcEEEEcCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCC-
Confidence 3456678899999999999999888654 258999999999999998877654 37888888887653
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....||.|+|. +++..-++ .....++|.++.++|||||++
T Consensus 111 ---------------------~~~~fD~v~~~------~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l 150 (216)
T 3ofk_A 111 ---------------------TAELFDLIVVA------EVLYYLED-------------MTQMRTAIDNMVKMLAPGGHL 150 (216)
T ss_dssp ---------------------CSCCEEEEEEE------SCGGGSSS-------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred ---------------------CCCCccEEEEc------cHHHhCCC-------------HHHHHHHHHHHHHHcCCCCEE
Confidence 12679999983 22211111 122346899999999999999
Q ss_pred EEEeC------CCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 232 VYSTC------SMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 232 VYSTC------Sl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+++|. ++........+..++...-..++.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 188 (216)
T 3ofk_A 151 VFGSARDATCRRWGHVAGAETVITILTEALTEVERVQC 188 (216)
T ss_dssp EEEEECHHHHHHTTCSCCHHHHHHHHHHHSEEEEEEEE
T ss_pred EEEecCCCcchhhhhhhhHHHHHHHHHhhccceEEEec
Confidence 99862 233356666666777654334444444
No 127
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.82 E-value=1.7e-08 Score=101.33 Aligned_cols=130 Identities=14% Similarity=0.094 Sum_probs=93.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+|||+|||+|..+..++. +...|+++|+++..+..++.++...+ ..++.+...|+..++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~-----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------ 129 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS-----------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP------ 129 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB-----------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC------
T ss_pred CCCEEEeCCCCCHHHHHHHh-----------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC------
Confidence 45999999999999887754 25789999999999999998876643 3568888888876431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
...||.|++-.. +..-+ + ....++|..+.++|||||+|+..+.+
T Consensus 130 ----------------~~~fD~v~~~~~------l~~~~-------~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 130 ----------------TELFDLIFDYVF------FCAIE-------P-------EMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp ----------------SSCEEEEEEESS------TTTSC-------G-------GGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ----------------CCCeeEEEEChh------hhcCC-------H-------HHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 247999997321 11111 0 12356789999999999999987665
Q ss_pred CCCc-------CcHHHHHHHHHHCCCcEEEEec
Q 004775 238 MNPV-------ENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 238 l~p~-------ENEaVV~~~L~~~~g~~elvd~ 263 (731)
.... -..+.+..+|++.| |+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~ 204 (235)
T 3lcc_A 174 ITDHVGGPPYKVDVSTFEEVLVPIG--FKAVSV 204 (235)
T ss_dssp CSCCCSCSSCCCCHHHHHHHHGGGT--EEEEEE
T ss_pred ccccCCCCCccCCHHHHHHHHHHcC--CeEEEE
Confidence 4322 24677888888876 555554
No 128
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.82 E-value=4.9e-09 Score=106.11 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=91.1
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccc
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQ 147 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~ 147 (731)
+...++.+.++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+..+ +.+...|+.
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPE--------DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCT--------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 3344556678999999999999999999987532 4799999999999999999999988865 888888875
Q ss_pred cC-CCcccCCCCCCCCcccccccccccc--ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004775 148 HF-PGCRANKNFSSASDKGIESESNMGQ--LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 148 ~f-p~~~~~~~~~~~~~~~~~~~~~~~~--~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (731)
.+ +.+... .... .+ ...+.. ..||.|++|... + ....++..+.++
T Consensus 123 ~~~~~~~~~-~~~~----~~--~~~f~~~~~~fD~I~~~~~~---------~----------------~~~~~l~~~~~~ 170 (239)
T 2hnk_A 123 ETLQVLIDS-KSAP----SW--ASDFAFGPSSIDLFFLDADK---------E----------------NYPNYYPLILKL 170 (239)
T ss_dssp HHHHHHHHC-SSCC----GG--GTTTCCSTTCEEEEEECSCG---------G----------------GHHHHHHHHHHH
T ss_pred HHHHHHHhh-cccc----cc--cccccCCCCCcCEEEEeCCH---------H----------------HHHHHHHHHHHH
Confidence 42 111000 0000 00 001111 579999997420 0 012568889999
Q ss_pred ccCCCEEEEEeCCC
Q 004775 225 LKVGGRIVYSTCSM 238 (731)
Q Consensus 225 LKpGG~LVYSTCSl 238 (731)
|||||+|++.++.+
T Consensus 171 L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 171 LKPGGLLIADNVLW 184 (239)
T ss_dssp EEEEEEEEEECSSG
T ss_pred cCCCeEEEEEcccc
Confidence 99999999987654
No 129
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.82 E-value=3.4e-08 Score=100.00 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=80.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+...++.+|||+|||+|..+..+++.- ...|+++|+++..+..+++++. ..++.+...|+..++.
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~-- 104 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHG----------AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI-- 104 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTT----------CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcC----------CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--
Confidence 345588999999999999999887751 2389999999999988876544 4678888888876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++.- ++..- ....++|+.+.++|||||+++.
T Consensus 105 -------------------~~~~fD~v~~~~------~l~~~----------------~~~~~~l~~~~~~LkpgG~l~~ 143 (253)
T 3g5l_A 105 -------------------EPDAYNVVLSSL------ALHYI----------------ASFDDICKKVYINLKSSGSFIF 143 (253)
T ss_dssp -------------------CTTCEEEEEEES------CGGGC----------------SCHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeEEEEEch------hhhhh----------------hhHHHHHHHHHHHcCCCcEEEE
Confidence 126899999732 11111 1125689999999999999999
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
++.+
T Consensus 144 ~~~~ 147 (253)
T 3g5l_A 144 SVEH 147 (253)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8543
No 130
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.82 E-value=2.1e-08 Score=97.01 Aligned_cols=109 Identities=16% Similarity=0.022 Sum_probs=83.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+++..++.+|||+|||+|..+..+++. ...|+++|+++..+..++++++..+.+++.+...|+..++.
T Consensus 27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~- 94 (199)
T 2xvm_A 27 AVKVVKPGKTLDLGCGNGRNSLYLAAN-----------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF- 94 (199)
T ss_dssp HTTTSCSCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-
T ss_pred HhhccCCCeEEEEcCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-
Confidence 345567889999999999999988775 25899999999999999999988888788888888776431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|++... +.. +.+ ....++|..+.++|||||+++
T Consensus 95 ---------------------~~~~D~v~~~~~------l~~-------~~~-------~~~~~~l~~~~~~L~~gG~l~ 133 (199)
T 2xvm_A 95 ---------------------DRQYDFILSTVV------LMF-------LEA-------KTIPGLIANMQRCTKPGGYNL 133 (199)
T ss_dssp ---------------------CCCEEEEEEESC------GGG-------SCG-------GGHHHHHHHHHHTEEEEEEEE
T ss_pred ---------------------CCCceEEEEcch------hhh-------CCH-------HHHHHHHHHHHHhcCCCeEEE
Confidence 267999997432 111 010 123568899999999999987
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
+.
T Consensus 134 ~~ 135 (199)
T 2xvm_A 134 IV 135 (199)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 131
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.81 E-value=5.1e-09 Score=106.51 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=82.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..+|.+|||+|||.|..+..+++. ....|+++|+|+..++.++++.+..+ .++.+...|+..+..
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~----------~~~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~---- 122 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEA----------PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---- 122 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTS----------CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----
T ss_pred ccCCCeEEEECCCccHHHHHHHHh----------CCcEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcc----
Confidence 368999999999999988887653 12579999999999999998877655 357777888765321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
......||.|+.|+..+.... .-......++..+.++|||||+++|.+
T Consensus 123 ---------------~~~~~~FD~i~~D~~~~~~~~-----------------~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 123 ---------------TLPDGHFDGILYDTYPLSEET-----------------WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ---------------GSCTTCEEEEEECCCCCBGGG-----------------TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---------------cccccCCceEEEeeeecccch-----------------hhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 122367999999976332221 111234568889999999999999853
No 132
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.81 E-value=8.9e-09 Score=102.91 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=81.3
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
..+.+.++.+|||+|||+|..+..++.. .+.|+++|+++..+..+++++...+ ++.+...|+....
T Consensus 64 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~- 129 (231)
T 1vbf_A 64 DELDLHKGQKVLEIGTGIGYYTALIAEI-----------VDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGY- 129 (231)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCC-
T ss_pred HhcCCCCCCEEEEEcCCCCHHHHHHHHH-----------cCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccc-
Confidence 3457789999999999999999999876 2689999999999999999887766 7888888775511
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||+|+++.++... ...+.++|||||++
T Consensus 130 --------------------~~~~~fD~v~~~~~~~~~----------------------------~~~~~~~L~pgG~l 161 (231)
T 1vbf_A 130 --------------------EEEKPYDRVVVWATAPTL----------------------------LCKPYEQLKEGGIM 161 (231)
T ss_dssp --------------------GGGCCEEEEEESSBBSSC----------------------------CHHHHHTEEEEEEE
T ss_pred --------------------ccCCCccEEEECCcHHHH----------------------------HHHHHHHcCCCcEE
Confidence 012579999997653210 12467799999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
++++.+-
T Consensus 162 ~~~~~~~ 168 (231)
T 1vbf_A 162 ILPIGVG 168 (231)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 9997643
No 133
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.81 E-value=4.1e-09 Score=106.32 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
++++.+|||+|||+|..+..++.. +...|+++|+|+..++.+++++++.+ .++.+...|+..+..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~---- 122 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA----------PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---- 122 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS----------CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc----------CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----
Confidence 578999999999999999888542 13589999999999999999887666 578888888766410
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
......||.|++|.-+- .. + .+. ......++..+.++|||||++++..
T Consensus 123 ---------------~~~~~~fD~V~~d~~~~---~~---~----~~~-------~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 123 ---------------TLPDGHFDGILYDTYPL---SE---E----TWH-------THQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ---------------GSCTTCEEEEEECCCCC---BG---G----GTT-------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---------------ccCCCceEEEEECCccc---ch---h----hhh-------hhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 11236899999972110 00 0 010 1223467899999999999999875
Q ss_pred CC
Q 004775 236 CS 237 (731)
Q Consensus 236 CS 237 (731)
++
T Consensus 171 ~~ 172 (236)
T 1zx0_A 171 LT 172 (236)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 134
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.81 E-value=9.9e-09 Score=103.59 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=82.8
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
..++++.++.+|||+|||+|..+..+++.. + +.|+++|+++..+..++.+++..+..++.+...|+.. +
T Consensus 84 ~~~l~~~~~~~vLdiG~G~G~~~~~la~~~---------~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~ 152 (235)
T 1jg1_A 84 LEIANLKPGMNILEVGTGSGWNAALISEIV---------K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-G 152 (235)
T ss_dssp HHHHTCCTTCCEEEECCTTSHHHHHHHHHH---------C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-C
T ss_pred HHhcCCCCCCEEEEEeCCcCHHHHHHHHHh---------C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-C
Confidence 344578899999999999999999998874 2 5799999999999999999999998888888887621 1
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
+ .....||+|+++.++.. +...+.++|||||+
T Consensus 153 -~-------------------~~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~pgG~ 184 (235)
T 1jg1_A 153 -F-------------------PPKAPYDVIIVTAGAPK----------------------------IPEPLIEQLKIGGK 184 (235)
T ss_dssp -C-------------------GGGCCEEEEEECSBBSS----------------------------CCHHHHHTEEEEEE
T ss_pred -C-------------------CCCCCccEEEECCcHHH----------------------------HHHHHHHhcCCCcE
Confidence 0 01135999998765311 01245779999999
Q ss_pred EEEEeC
Q 004775 231 IVYSTC 236 (731)
Q Consensus 231 LVYSTC 236 (731)
|+.++-
T Consensus 185 lvi~~~ 190 (235)
T 1jg1_A 185 LIIPVG 190 (235)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999854
No 135
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.80 E-value=7.7e-09 Score=104.71 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=89.6
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccC-
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF- 149 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~f- 149 (731)
.++...++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+.. ++.+...|+..+
T Consensus 66 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l 137 (232)
T 3cbg_A 66 LLISLTGAKQVLEIGVFRGYSALAMALQLPP--------DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL 137 (232)
T ss_dssp HHHHHHTCCEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHhcCCCEEEEecCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3445567889999999999999999886532 579999999999999999999998875 588888877542
Q ss_pred CCcccCCCCCCCCcccccccccccc--ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQ--LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~--~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
+.+ .... ..||.|++|+++. ....++..+.++|+|
T Consensus 138 ~~l------------------~~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~Lkp 174 (232)
T 3cbg_A 138 EQL------------------TQGKPLPEFDLIFIDADKR-------------------------NYPRYYEIGLNLLRR 174 (232)
T ss_dssp HHH------------------HTSSSCCCEEEEEECSCGG-------------------------GHHHHHHHHHHTEEE
T ss_pred HHH------------------HhcCCCCCcCEEEECCCHH-------------------------HHHHHHHHHHHHcCC
Confidence 110 0111 5799999987510 113468888999999
Q ss_pred CCEEEEEeCCCC
Q 004775 228 GGRIVYSTCSMN 239 (731)
Q Consensus 228 GG~LVYSTCSl~ 239 (731)
||+||+..+.+.
T Consensus 175 gG~lv~~~~~~~ 186 (232)
T 3cbg_A 175 GGLMVIDNVLWH 186 (232)
T ss_dssp EEEEEEECTTGG
T ss_pred CeEEEEeCCCcC
Confidence 999999888764
No 136
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.80 E-value=5.1e-09 Score=104.55 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=89.2
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~f 149 (731)
..++...++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+. .++.+...|+..+
T Consensus 62 ~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 133 (229)
T 2avd_A 62 ANLARLIQAKKALDLGTFTGYSALALALALPA--------DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 133 (229)
T ss_dssp HHHHHHTTCCEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHhcCCCEEEEEcCCccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH
Confidence 34456678899999999999999999876532 57999999999999999999999887 5788888887542
Q ss_pred C-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 150 P-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 150 p-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
. .+. .......||.|++|++. ..+..++..+.++|+||
T Consensus 134 ~~~~~----------------~~~~~~~~D~v~~d~~~-------------------------~~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 134 LDELL----------------AAGEAGTFDVAVVDADK-------------------------ENCSAYYERCLQLLRPG 172 (229)
T ss_dssp HHHHH----------------HTTCTTCEEEEEECSCS-------------------------TTHHHHHHHHHHHEEEE
T ss_pred HHHHH----------------hcCCCCCccEEEECCCH-------------------------HHHHHHHHHHHHHcCCC
Confidence 1 100 00001579999999861 01235788899999999
Q ss_pred CEEEEEeCC
Q 004775 229 GRIVYSTCS 237 (731)
Q Consensus 229 G~LVYSTCS 237 (731)
|+|++..+.
T Consensus 173 G~lv~~~~~ 181 (229)
T 2avd_A 173 GILAVLRVL 181 (229)
T ss_dssp EEEEEECCS
T ss_pred eEEEEECCC
Confidence 999987654
No 137
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.79 E-value=7.4e-08 Score=94.52 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=83.1
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+..+.++.+|||+|||+|..+..++.. ...|+++|+++..+..++. .+..++.+...|+..+.
T Consensus 41 l~~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-- 103 (218)
T 3ou2_A 41 LRAGNIRGDVLELASGTGYWTRHLSGL-----------ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-- 103 (218)
T ss_dssp HTTTTSCSEEEEESCTTSHHHHHHHHH-----------SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--
T ss_pred HhcCCCCCeEEEECCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--
Confidence 334678899999999999999999876 2589999999999887766 56678888888876641
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++.. ++..-++ .....+|..+.++|||||+++
T Consensus 104 --------------------~~~~~D~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~L~pgG~l~ 143 (218)
T 3ou2_A 104 --------------------PDRQWDAVFFAH------WLAHVPD--------------DRFEAFWESVRSAVAPGGVVE 143 (218)
T ss_dssp --------------------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCceeEEEEec------hhhcCCH--------------HHHHHHHHHHHHHcCCCeEEE
Confidence 126899999732 2211111 223678999999999999999
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
+++.+.
T Consensus 144 ~~~~~~ 149 (218)
T 3ou2_A 144 FVDVTD 149 (218)
T ss_dssp EEEECC
T ss_pred EEeCCC
Confidence 998754
No 138
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.79 E-value=1.9e-08 Score=98.68 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||+|||+|..+..++... +.+.|+++|+++..+..++++++..+..++.+...|+..++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------ 129 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR---------PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS------ 129 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC------
T ss_pred CCCeEEEECCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc------
Confidence 58899999999999999998864 357999999999999999999999998888888888766431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
...||.|++..- + ....++..+.++|+|||+++.....
T Consensus 130 ----------------~~~~D~i~~~~~-------------------------~-~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 130 ----------------EPPFDGVISRAF-------------------------A-SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp ----------------CSCEEEEECSCS-------------------------S-SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred ----------------cCCcCEEEEecc-------------------------C-CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 157999997320 0 0236889999999999999987554
No 139
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.79 E-value=1.6e-08 Score=100.22 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=81.6
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc------------CCCceEE
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------------CTANLIV 141 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl------------g~~ni~v 141 (731)
+.+.++.+|||++||+|..+..|++. ...|+|+|+|+..++.++++.... ...++.+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~-----------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ-----------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH-----------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC-----------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 34568999999999999999999875 248999999999999888765321 2356788
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004775 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (731)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (731)
.+.|+..++.. ....||.|++-. .+..-+ .....+.+.+.
T Consensus 87 ~~~d~~~l~~~--------------------~~~~fD~v~~~~------~l~~l~--------------~~~~~~~l~~~ 126 (203)
T 1pjz_A 87 WCGDFFALTAR--------------------DIGHCAAFYDRA------AMIALP--------------ADMRERYVQHL 126 (203)
T ss_dssp EEECCSSSTHH--------------------HHHSEEEEEEES------CGGGSC--------------HHHHHHHHHHH
T ss_pred EECccccCCcc--------------------cCCCEEEEEECc------chhhCC--------------HHHHHHHHHHH
Confidence 88887765310 015799998621 111100 12335678999
Q ss_pred HhhccCCCEEEEEeCCCC
Q 004775 222 ISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 222 l~lLKpGG~LVYSTCSl~ 239 (731)
.++|||||++++.|+.+.
T Consensus 127 ~r~LkpgG~~~l~~~~~~ 144 (203)
T 1pjz_A 127 EALMPQACSGLLITLEYD 144 (203)
T ss_dssp HHHSCSEEEEEEEEESSC
T ss_pred HHHcCCCcEEEEEEEecC
Confidence 999999999777776653
No 140
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.78 E-value=3.8e-08 Score=99.28 Aligned_cols=129 Identities=12% Similarity=-0.031 Sum_probs=92.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
...++.+|||+|||+|..+..+++.. ...|+++|+++..+..+++++... .++.+...|+..++.
T Consensus 90 ~~~~~~~vLDiG~G~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--- 154 (254)
T 1xtp_A 90 PGHGTSRALDCGAGIGRITKNLLTKL----------YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--- 154 (254)
T ss_dssp TTCCCSEEEEETCTTTHHHHHTHHHH----------CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC---
T ss_pred cccCCCEEEEECCCcCHHHHHHHHhh----------cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC---
Confidence 45689999999999999999988763 257999999999999988876543 578888888766431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....||.|++.. ++..-++ ....++|..+.++|||||+++++
T Consensus 155 ------------------~~~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 155 ------------------PPNTYDLIVIQW------TAIYLTD--------------ADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp ------------------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCCCeEEEEEcc------hhhhCCH--------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 125799999722 1111100 23467899999999999999998
Q ss_pred eCCCCC------------cCcHHHHHHHHHHCCC
Q 004775 235 TCSMNP------------VENEAVVAEILRKCEG 256 (731)
Q Consensus 235 TCSl~p------------~ENEaVV~~~L~~~~g 256 (731)
+..... .-..+-+..+|++.|-
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 230 (254)
T 1xtp_A 197 ENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGV 230 (254)
T ss_dssp EEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTC
T ss_pred ecCCCcccceecccCCcccCCHHHHHHHHHHCCC
Confidence 742211 1244667777777763
No 141
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.78 E-value=5.2e-09 Score=119.60 Aligned_cols=170 Identities=13% Similarity=0.012 Sum_probs=110.2
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCC-CCC--------CCeEEEEEeCCHHHHHH
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNP-GAL--------PNGMVIANDLDVQRCNL 126 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~-~~~--------p~G~VvAnDid~~R~~~ 126 (731)
..|.++--..++.+.+.++++.++.+|||.|||+|+..+.++..+...... +.. ....|+|+|+++..+.+
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l 226 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 226 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence 346665555555555677788999999999999999999999887532100 000 01369999999999999
Q ss_pred HHHHHHHcCCCc-----eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh
Q 004775 127 LIHQTKRMCTAN-----LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK 201 (731)
Q Consensus 127 L~~n~kRlg~~n-----i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~ 201 (731)
++.++...|..+ ..+.+.|+...+ ......||+|+++||+++........ .
T Consensus 227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~--------------------~~~~~~fD~Vv~NPPf~~~~~~~~~~----~ 282 (541)
T 2ar0_A 227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSD--------------------GENLPKAHIVATNPPFGSAAGTNITR----T 282 (541)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHH--------------------HHTSCCEEEEEECCCCTTCSSCCCCS----C
T ss_pred HHHHHHHhCCCccccccCCeEeCCCcccc--------------------cccccCCeEEEECCCcccccchhhHh----h
Confidence 999988777654 556666653311 01125799999999998865432100 1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC--CCCcCcHHHHHHHHHH
Q 004775 202 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRK 253 (731)
Q Consensus 202 w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS--l~p~ENEaVV~~~L~~ 253 (731)
+.. .-...+...+.+++++||+||++++.+.. +.....+..+...|.+
T Consensus 283 ~~~----~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~ 332 (541)
T 2ar0_A 283 FVH----PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 332 (541)
T ss_dssp CSS----CCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred cCC----CCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence 111 11223457899999999999999988643 3333334555555544
No 142
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.78 E-value=2.5e-08 Score=104.70 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=87.4
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~ 152 (731)
..+.++.+|||+|||+|..+..++... .+.+.|+++|+++..+..+++++.+.+..+ +.+...|+..++.
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 184 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSA--------CPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT- 184 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTT--------CTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-
Confidence 456889999999999999988875322 246799999999999999999998888754 8899998877531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. ..||.|++..+ +...|+ ...+.+++..+.++|||||+++
T Consensus 185 --------------------~-~~fD~v~~~~~------~~~~~~-------------~~~~~~~l~~~~~~LkpgG~l~ 224 (305)
T 3ocj_A 185 --------------------R-EGYDLLTSNGL------NIYEPD-------------DARVTELYRRFWQALKPGGALV 224 (305)
T ss_dssp --------------------C-SCEEEEECCSS------GGGCCC-------------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------c-CCeEEEEECCh------hhhcCC-------------HHHHHHHHHHHHHhcCCCeEEE
Confidence 1 67999997432 211111 1223468999999999999999
Q ss_pred EEeCC
Q 004775 233 YSTCS 237 (731)
Q Consensus 233 YSTCS 237 (731)
.++.+
T Consensus 225 i~~~~ 229 (305)
T 3ocj_A 225 TSFLT 229 (305)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98744
No 143
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.78 E-value=3.1e-08 Score=110.00 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=67.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..||.. ...|+|+|+++..++.+++|++.++.. +.+...|+..++.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-----------~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~---- 351 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-----------GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV---- 351 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC----
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc----
Confidence 578999999999999999998864 358999999999999999999998887 8888888876421
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCC
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
..||.|++|+|.+|.
T Consensus 352 -------------------~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 352 -------------------KGFDTVIVDPPRAGL 366 (425)
T ss_dssp -------------------TTCSEEEECCCTTCS
T ss_pred -------------------cCCCEEEEcCCccch
Confidence 279999999997553
No 144
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.78 E-value=5.7e-08 Score=95.66 Aligned_cols=124 Identities=15% Similarity=0.046 Sum_probs=90.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+-.+.++.+|||+|||+|..+..+++. ...|+++|+++..+..++.++ ++.+...|+..++
T Consensus 38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-- 98 (211)
T 3e23_A 38 LGELPAGAKILELGCGAGYQAEAMLAA-----------GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-- 98 (211)
T ss_dssp HTTSCTTCEEEESSCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC--
T ss_pred HHhcCCCCcEEEECCCCCHHHHHHHHc-----------CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC--
Confidence 334678999999999999999988764 358999999999999888765 3344556655543
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++.. ++...+ ......+|..+.++|||||+++
T Consensus 99 --------------------~~~~fD~v~~~~------~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~ 138 (211)
T 3e23_A 99 --------------------AIDAYDAVWAHA------CLLHVP--------------RDELADVLKLIWRALKPGGLFY 138 (211)
T ss_dssp --------------------CCSCEEEEEECS------CGGGSC--------------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCcEEEEEecC------chhhcC--------------HHHHHHHHHHHHHhcCCCcEEE
Confidence 136899999732 221111 1234578999999999999999
Q ss_pred EEeCCCCCc-----------CcHHHHHHHHHHCC
Q 004775 233 YSTCSMNPV-----------ENEAVVAEILRKCE 255 (731)
Q Consensus 233 YSTCSl~p~-----------ENEaVV~~~L~~~~ 255 (731)
.+++..... -+.+-+..+|++.|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 172 (211)
T 3e23_A 139 ASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAG 172 (211)
T ss_dssp EEEECCSSCEECTTSCEECCCCHHHHHHHHHHHC
T ss_pred EEEcCCCcccccccchhccCCCHHHHHHHHHhCC
Confidence 997765432 26777888888876
No 145
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.78 E-value=4.4e-08 Score=96.75 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++.+|||+|||+|..+..+++. ...|+++|+++..+..+++++. .++.+...|+..++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~--- 103 (220)
T 3hnr_A 42 VNKSFGNVLEFGVGTGNLTNKLLLA-----------GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEV--- 103 (220)
T ss_dssp HHTCCSEEEEECCTTSHHHHHHHHT-----------TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCC---
T ss_pred hccCCCeEEEeCCCCCHHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCC---
Confidence 3458999999999999999988774 3689999999999988877543 467778888766431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
. ..||.|++.. ++..-++ ..+..+|..+.++|||||+++.+
T Consensus 104 ------------------~-~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 104 ------------------P-TSIDTIVSTY------AFHHLTD--------------DEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp ------------------C-SCCSEEEEES------CGGGSCH--------------HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ------------------C-CCeEEEEECc------chhcCCh--------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 6799999842 2211111 11245899999999999999998
Q ss_pred eCCCC
Q 004775 235 TCSMN 239 (731)
Q Consensus 235 TCSl~ 239 (731)
+..+.
T Consensus 145 ~~~~~ 149 (220)
T 3hnr_A 145 DTIFA 149 (220)
T ss_dssp EECBS
T ss_pred ecccc
Confidence 75543
No 146
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.77 E-value=4.1e-08 Score=97.36 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH----HcCCCceEEEeccccc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK----RMCTANLIVTNHEAQH 148 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k----Rlg~~ni~vt~~Da~~ 148 (731)
.+.++++.+|||+|||+|..+..+++.. |.+.|+|+|+++.++..+..+++ +.+.+++.+...|+..
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQN---------PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHHC---------TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 3457889999999999999999998863 46899999999998886655443 3566789999999887
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
+|.. ... |.|.+..+. ......+ ...+..+|..+.++||||
T Consensus 93 l~~~---------------------~~~-d~v~~~~~~---------~~~~~~~--------~~~~~~~l~~~~~~Lkpg 133 (218)
T 3mq2_A 93 LPPL---------------------SGV-GELHVLMPW---------GSLLRGV--------LGSSPEMLRGMAAVCRPG 133 (218)
T ss_dssp CCSC---------------------CCE-EEEEEESCC---------HHHHHHH--------HTSSSHHHHHHHHTEEEE
T ss_pred CCCC---------------------CCC-CEEEEEccc---------hhhhhhh--------hccHHHHHHHHHHHcCCC
Confidence 6521 123 656543330 0000000 011256789999999999
Q ss_pred CEEEEEe
Q 004775 229 GRIVYST 235 (731)
Q Consensus 229 G~LVYST 235 (731)
|+++++.
T Consensus 134 G~l~~~~ 140 (218)
T 3mq2_A 134 ASFLVAL 140 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9999863
No 147
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.77 E-value=1.1e-08 Score=108.28 Aligned_cols=124 Identities=14% Similarity=0.106 Sum_probs=82.1
Q ss_pred hcCCCCCCEEEeecc------CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE-Eecc
Q 004775 73 FLDVQPDHFVLDMCA------APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV-TNHE 145 (731)
Q Consensus 73 lLd~~pg~~VLDmCA------APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~v-t~~D 145 (731)
.+.+++|++|||+|| |||+ ..+++.+. +.+.|+|+|+++. +.++.+ .++|
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~--------~~~~V~gvDis~~-------------v~~v~~~i~gD 114 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP--------TGTLLVDSDLNDF-------------VSDADSTLIGD 114 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSC--------TTCEEEEEESSCC-------------BCSSSEEEESC
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC--------CCCEEEEEECCCC-------------CCCCEEEEECc
Confidence 356789999999999 8898 44555543 2589999999987 135667 7888
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
+..++. ...||+|++|+++...|... ...... ..+..++|..+.++|
T Consensus 115 ~~~~~~----------------------~~~fD~Vvsn~~~~~~g~~~----------~d~~~~-~~l~~~~l~~a~r~L 161 (290)
T 2xyq_A 115 CATVHT----------------------ANKWDLIISDMYDPRTKHVT----------KENDSK-EGFFTYLCGFIKQKL 161 (290)
T ss_dssp GGGCCC----------------------SSCEEEEEECCCCCC---CC----------SCCCCC-CTHHHHHHHHHHHHE
T ss_pred cccCCc----------------------cCcccEEEEcCCcccccccc----------ccccch-HHHHHHHHHHHHHhc
Confidence 765421 15799999998766655421 111111 233468899999999
Q ss_pred cCCCEEEEEeCCCCCcCcHHHHHHHHHHCC
Q 004775 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (731)
Q Consensus 226 KpGG~LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (731)
||||+++..+-.. ...+ .+.++|++++
T Consensus 162 kpGG~~v~~~~~~--~~~~-~l~~~l~~~G 188 (290)
T 2xyq_A 162 ALGGSIAVKITEH--SWNA-DLYKLMGHFS 188 (290)
T ss_dssp EEEEEEEEEECSS--SCCH-HHHHHHTTEE
T ss_pred CCCcEEEEEEecc--CCHH-HHHHHHHHcC
Confidence 9999999864332 2233 4556676543
No 148
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.77 E-value=3.9e-08 Score=99.15 Aligned_cols=130 Identities=16% Similarity=0.009 Sum_probs=93.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..+++.. ...|+++|+++..+..+++++...+..++.+...|+..++.
T Consensus 77 ~~~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---- 142 (241)
T 2ex4_A 77 KTGTSCALDCGAGIGRITKRLLLPL----------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP---- 142 (241)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT----------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC----
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC----
Confidence 4478999999999999988876542 35899999999999999988776655567788888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|+++. ++..-++ .....+|..+.++|||||+|++++
T Consensus 143 -----------------~~~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 143 -----------------EPDSYDVIWIQW------VIGHLTD--------------QHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp -----------------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCCEEEEEEcc------hhhhCCH--------------HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 125799999853 2211111 123578999999999999999976
Q ss_pred CCCCC-----------cCcHHHHHHHHHHCCC
Q 004775 236 CSMNP-----------VENEAVVAEILRKCEG 256 (731)
Q Consensus 236 CSl~p-----------~ENEaVV~~~L~~~~g 256 (731)
..... .-+.+-+..+|++.|-
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 217 (241)
T 2ex4_A 186 NMAQEGVILDDVDSSVCRDLDVVRRIICSAGL 217 (241)
T ss_dssp EEBSSSEEEETTTTEEEEBHHHHHHHHHHTTC
T ss_pred ccCCCcceecccCCcccCCHHHHHHHHHHcCC
Confidence 43221 1156777888888763
No 149
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.77 E-value=2.7e-08 Score=108.40 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=88.4
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----C---CCceEEEecc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----C---TANLIVTNHE 145 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----g---~~ni~vt~~D 145 (731)
+++.++.+|||+|||+|..+..++..++. .+.|+++|+++..+..++++++++ | .+++.+...|
T Consensus 79 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d 150 (383)
T 4fsd_A 79 DGSLEGATVLDLGCGTGRDVYLASKLVGE--------HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGF 150 (383)
T ss_dssp GGGGTTCEEEEESCTTSHHHHHHHHHHTT--------TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESC
T ss_pred ccCCCCCEEEEecCccCHHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEcc
Confidence 34678999999999999999999988642 579999999999999999988765 3 2688999988
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
+..+.... +.......||+|++... +...++ ..++|..+.++|
T Consensus 151 ~~~l~~~~---------------~~~~~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r~L 193 (383)
T 4fsd_A 151 IENLATAE---------------PEGVPDSSVDIVISNCV------CNLSTN----------------KLALFKEIHRVL 193 (383)
T ss_dssp TTCGGGCB---------------SCCCCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHE
T ss_pred HHHhhhcc---------------cCCCCCCCEEEEEEccc------hhcCCC----------------HHHHHHHHHHHc
Confidence 87642110 00122368999998532 211111 247899999999
Q ss_pred cCCCEEEEEeCC
Q 004775 226 KVGGRIVYSTCS 237 (731)
Q Consensus 226 KpGG~LVYSTCS 237 (731)
||||+|++++..
T Consensus 194 kpgG~l~i~~~~ 205 (383)
T 4fsd_A 194 RDGGELYFSDVY 205 (383)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 999999998643
No 150
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.77 E-value=1.5e-08 Score=103.35 Aligned_cols=120 Identities=14% Similarity=0.174 Sum_probs=83.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH------cCCCceEEEeccccc-
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR------MCTANLIVTNHEAQH- 148 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR------lg~~ni~vt~~Da~~- 148 (731)
..++.+|||+|||.|..+..||... |...|+|+|+++.++..++.+++. .+..|+.+...|+..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~ 114 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF---------PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH 114 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS---------TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh
Confidence 3567899999999999999988753 357899999999999999988765 356789999999875
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
++.. .....||+|++..| +.|.+-... .-.-.+..+|..+.++||||
T Consensus 115 l~~~-------------------~~~~~~D~v~~~~~-----------dp~~k~~h~---krr~~~~~~l~~~~~~LkpG 161 (235)
T 3ckk_A 115 LPNF-------------------FYKGQLTKMFFLFP-----------DPHFKRTKH---KWRIISPTLLAEYAYVLRVG 161 (235)
T ss_dssp HHHH-------------------CCTTCEEEEEEESC-----------C--------------CCCHHHHHHHHHHEEEE
T ss_pred hhhh-------------------CCCcCeeEEEEeCC-----------Cchhhhhhh---hhhhhhHHHHHHHHHHCCCC
Confidence 2210 12367999987554 222110000 00012356899999999999
Q ss_pred CEEEEEeCC
Q 004775 229 GRIVYSTCS 237 (731)
Q Consensus 229 G~LVYSTCS 237 (731)
|+|+.+|+.
T Consensus 162 G~l~~~td~ 170 (235)
T 3ckk_A 162 GLVYTITDV 170 (235)
T ss_dssp EEEEEEESC
T ss_pred CEEEEEeCC
Confidence 999998864
No 151
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.77 E-value=3.1e-08 Score=101.64 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=87.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.++.+|||+|||+|..+..+++.. |.+.|+++|+++..+..++.++...+.+++.+...|+..++.
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 101 (276)
T 3mgg_A 33 TVYPPGAKVLEAGCGIGAQTVILAKNN---------PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF-- 101 (276)
T ss_dssp CCCCTTCEEEETTCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--
T ss_pred ccCCCCCeEEEecCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--
Confidence 345789999999999999999998873 357999999999999999999999998899999988876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++... +..-++ ...+|..+.++|||||+++.
T Consensus 102 -------------------~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~~ 140 (276)
T 3mgg_A 102 -------------------EDSSFDHIFVCFV------LEHLQS----------------PEEALKSLKKVLKPGGTITV 140 (276)
T ss_dssp -------------------CTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeeEEEEech------hhhcCC----------------HHHHHHHHHHHcCCCcEEEE
Confidence 1268999997432 111111 13678889999999999998
Q ss_pred Ee
Q 004775 234 ST 235 (731)
Q Consensus 234 ST 235 (731)
.+
T Consensus 141 ~~ 142 (276)
T 3mgg_A 141 IE 142 (276)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 152
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.75 E-value=6e-08 Score=101.98 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=87.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~ 151 (731)
.+++.++.+|||+|||+|..+..+++..+ ..|+++|+++..+..+++++...+.. ++.+...|+..+|
T Consensus 85 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 153 (318)
T 2fk8_A 85 KLDLKPGMTLLDIGCGWGTTMRRAVERFD----------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA- 153 (318)
T ss_dssp TSCCCTTCEEEEESCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-
T ss_pred hcCCCCcCEEEEEcccchHHHHHHHHHCC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-
Confidence 45678999999999999999999988752 48999999999999999998888764 5888888765532
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
..||+|++.- ++..-+. .....+|..+.++|||||++
T Consensus 154 -----------------------~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 154 -----------------------EPVDRIVSIE------AFEHFGH--------------ENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp -----------------------CCCSEEEEES------CGGGTCG--------------GGHHHHHHHHHHHSCTTCEE
T ss_pred -----------------------CCcCEEEEeC------hHHhcCH--------------HHHHHHHHHHHHhcCCCcEE
Confidence 4699999742 1211110 12356889999999999999
Q ss_pred EEEeCCCCC
Q 004775 232 VYSTCSMNP 240 (731)
Q Consensus 232 VYSTCSl~p 240 (731)
+.++.....
T Consensus 191 ~~~~~~~~~ 199 (318)
T 2fk8_A 191 TVQSSVSYH 199 (318)
T ss_dssp EEEEEECCC
T ss_pred EEEEeccCC
Confidence 998877543
No 153
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.74 E-value=9.2e-09 Score=107.98 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=89.1
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~f 149 (731)
+..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++...+. .++.+.+.|+..+
T Consensus 21 ~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 21 IDKAALRPTDVVLEVGPGTGNMTVKLLEK-----------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHTCCCTTCEEEEECCTTSTTHHHHHHH-----------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHhcCCCCCCEEEEEcCcccHHHHHHHhh-----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 34567789999999999999999999886 35899999999999999998876665 6789999988764
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh--cccccccchHHHHHHHHHHHHhhccC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK--WNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~--w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
+. ..||.|+++.|+....- -++.- ..+.....+.-+|.++..+ ..|+|
T Consensus 90 ~~-----------------------~~fD~vv~nlpy~~~~~-----~~~~~l~~~~~~~~~~~m~qkEva~r--~vlkP 139 (285)
T 1zq9_A 90 DL-----------------------PFFDTCVANLPYQISSP-----FVFKLLLHRPFFRCAILMFQREFALR--LVAKP 139 (285)
T ss_dssp CC-----------------------CCCSEEEEECCGGGHHH-----HHHHHHHCSSCCSEEEEEEEHHHHHH--HHCCT
T ss_pred cc-----------------------hhhcEEEEecCcccchH-----HHHHHHhcCcchhhhhhhhhHHHHHH--HhcCC
Confidence 31 36899999999754321 11110 0011111222245555542 37899
Q ss_pred CCEEEEEeCCC
Q 004775 228 GGRIVYSTCSM 238 (731)
Q Consensus 228 GG~LVYSTCSl 238 (731)
||++ |+++|+
T Consensus 140 Gg~~-y~~lsv 149 (285)
T 1zq9_A 140 GDKL-YCRLSI 149 (285)
T ss_dssp TCTT-CSHHHH
T ss_pred CCcc-cchhhh
Confidence 9996 888876
No 154
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.74 E-value=6.8e-08 Score=99.81 Aligned_cols=107 Identities=20% Similarity=0.165 Sum_probs=83.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~~ 156 (731)
++.+|||+|||+|..+..++.. ...|+|+|+++..+..++++++..+. .++.+...|+..++..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---- 132 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-----------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH---- 132 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG----
T ss_pred CCCEEEEeCCcchHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh----
Confidence 3679999999999999988775 35899999999999999999988887 6889999988775421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
....||.|++... +..-++ ..++|..+.++|||||+++.++.
T Consensus 133 ----------------~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 133 ----------------LETPVDLILFHAV------LEWVAD----------------PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ----------------CSSCEEEEEEESC------GGGCSC----------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----------------cCCCceEEEECch------hhcccC----------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 2368999998432 211111 14689999999999999999875
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 175 ~ 175 (285)
T 4htf_A 175 N 175 (285)
T ss_dssp B
T ss_pred C
Confidence 3
No 155
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.74 E-value=2.5e-08 Score=107.04 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=89.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+.+.++.+|||+|||+|..+..++... +...|+++|+|+..+..+++++...+.. +.+...|+..++
T Consensus 191 ~l~~~~~~~VLDlGcG~G~~~~~la~~~---------~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~-- 258 (343)
T 2pjd_A 191 TLTPHTKGKVLDVGCGAGVLSVAFARHS---------PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV-- 258 (343)
T ss_dssp HSCTTCCSBCCBTTCTTSHHHHHHHHHC---------TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC--
T ss_pred hcCcCCCCeEEEecCccCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc--
Confidence 4455678899999999999999998762 3468999999999999999999887764 455566654321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|++++|.. .|.. .......+++..+.++|||||+++
T Consensus 259 ---------------------~~~fD~Iv~~~~~~-~g~~----------------~~~~~~~~~l~~~~~~LkpgG~l~ 300 (343)
T 2pjd_A 259 ---------------------KGRFDMIISNPPFH-DGMQ----------------TSLDAAQTLIRGAVRHLNSGGELR 300 (343)
T ss_dssp ---------------------CSCEEEEEECCCCC-SSSH----------------HHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred ---------------------cCCeeEEEECCCcc-cCcc----------------CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 25799999998842 1110 011334678999999999999999
Q ss_pred EEeCCCCC
Q 004775 233 YSTCSMNP 240 (731)
Q Consensus 233 YSTCSl~p 240 (731)
..+.+..+
T Consensus 301 i~~~~~~~ 308 (343)
T 2pjd_A 301 IVANAFLP 308 (343)
T ss_dssp EEEETTSS
T ss_pred EEEcCCCC
Confidence 99888765
No 156
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.74 E-value=3.6e-08 Score=96.55 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=86.6
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++.+|||+|||+|..+..++.. + .+.|+|+|+|+..+..+++++. ++.+.+.|+..++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~---------~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---- 108 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-G---------AESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---- 108 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-T---------BSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC----
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-C---------CCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC----
Confidence 4567899999999999999988764 1 3589999999999999888764 6777888776532
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
..||.|++|+|..- +.. ....+++.++++.+ |+ +|+
T Consensus 109 --------------------~~~D~v~~~~p~~~-------------~~~-------~~~~~~l~~~~~~~--g~--~~~ 144 (200)
T 1ne2_A 109 --------------------GKYDTWIMNPPFGS-------------VVK-------HSDRAFIDKAFETS--MW--IYS 144 (200)
T ss_dssp --------------------CCEEEEEECCCC---------------------------CHHHHHHHHHHE--EE--EEE
T ss_pred --------------------CCeeEEEECCCchh-------------ccC-------chhHHHHHHHHHhc--Cc--EEE
Confidence 46999999998321 111 11235678888887 33 777
Q ss_pred eCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
.|. + ...+.+..+++..+ .++.+.
T Consensus 145 ~~~--~-~~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 145 IGN--A-KARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp EEE--G-GGHHHHHHHHHHHE-EEEEEE
T ss_pred EEc--C-chHHHHHHHHHHCC-CEEEEE
Confidence 773 3 45667777888776 666654
No 157
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.74 E-value=5.5e-08 Score=100.25 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=86.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..++.. +.+.|+++|+++..+..+++++...+. .++.+...|+..++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--- 128 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA----------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM--- 128 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH----------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC---
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc---
Confidence 468999999999999999887764 135899999999999999999887766 468888888776431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|++... +. + ...-.....++|..+.++|||||+++.+
T Consensus 129 -----------------~~~~~fD~v~~~~~------l~--------~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 129 -----------------DLGKEFDVISSQFS------FH--------Y----AFSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp -----------------CCSSCEEEEEEESC------GG--------G----GGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------CCCCCcCEEEECch------hh--------h----hcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 01267999998531 10 0 0001233567899999999999999999
Q ss_pred eCCC
Q 004775 235 TCSM 238 (731)
Q Consensus 235 TCSl 238 (731)
++..
T Consensus 174 ~~~~ 177 (298)
T 1ri5_A 174 VPSR 177 (298)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8653
No 158
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.72 E-value=1.1e-08 Score=98.63 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=84.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. . .|+|+|+|+..+.. ..++.+.+.|+...
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-----------~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~------- 73 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-----------N-TVVSTDLNIRALES---------HRGGNLVRADLLCS------- 73 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-----------S-EEEEEESCHHHHHT---------CSSSCEEECSTTTT-------
T ss_pred CCCCeEEEeccCccHHHHHHHhc-----------C-cEEEEECCHHHHhc---------ccCCeEEECChhhh-------
Confidence 56789999999999998887653 2 89999999999876 35677777776541
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.....||.|++++|....... .. |.... ....++.+.++.| |||+++.++.
T Consensus 74 ---------------~~~~~fD~i~~n~~~~~~~~~----~~---~~~~~------~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 74 ---------------INQESVDVVVFNPPYVPDTDD----PI---IGGGY------LGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp ---------------BCGGGCSEEEECCCCBTTCCC----TT---TBCCG------GGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred ---------------cccCCCCEEEECCCCccCCcc----cc---ccCCc------chHHHHHHHHhhC-CCCEEEEEEe
Confidence 112679999999884322110 00 11100 1124566777777 9999999876
Q ss_pred CCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 237 SMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+. .+..-+.++|++.+ ++.+.+
T Consensus 125 ~~---~~~~~l~~~l~~~g--f~~~~~ 146 (170)
T 3q87_B 125 EA---NRPKEVLARLEERG--YGTRIL 146 (170)
T ss_dssp GG---GCHHHHHHHHHHTT--CEEEEE
T ss_pred cC---CCHHHHHHHHHHCC--CcEEEE
Confidence 65 56667788888876 444443
No 159
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.72 E-value=1.5e-07 Score=90.08 Aligned_cols=129 Identities=14% Similarity=-0.002 Sum_probs=91.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..++.. ...|+++|+++..+..+++++ +++.+...|+..++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~---- 103 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-----------GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQI---- 103 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCC----
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-----------CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCC----
Confidence 468999999999999999988764 258999999999998887754 346777777665421
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|++.+++-. . .. .....++|..+.++|+|||++++++
T Consensus 104 -----------------~~~~~D~i~~~~~~~~-----~-------~~-------~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 104 -----------------SETDFDLIVSAGNVMG-----F-------LA-------EDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp -----------------CCCCEEEEEECCCCGG-----G-------SC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCceeEEEECCcHHh-----h-------cC-------hHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1257999998643210 0 00 1224678999999999999999986
Q ss_pred CCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
..... -....+..+|++.| ++++..
T Consensus 148 ~~~~~-~~~~~~~~~l~~~G--f~~~~~ 172 (195)
T 3cgg_A 148 GAGRG-WVFGDFLEVAERVG--LELENA 172 (195)
T ss_dssp ETTSS-CCHHHHHHHHHHHT--EEEEEE
T ss_pred CCCCC-cCHHHHHHHHHHcC--CEEeee
Confidence 55432 34555677777765 555544
No 160
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.72 E-value=8.1e-08 Score=95.00 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=82.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. ...|+++|+++..+..++++++..+ .++.+...|+..++.
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~----- 99 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDY-----------GFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF----- 99 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS-----
T ss_pred CCCCeEEEEeccCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC-----
Confidence 45889999999999999888764 1389999999999999999988776 678888888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
....||.|++..+.. + +. .....++|.++.++|||||+++.+++
T Consensus 100 ----------------~~~~~D~v~~~~~~~----~---------~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 100 ----------------EDKTFDYVIFIDSIV----H---------FE-------PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp ----------------CTTCEEEEEEESCGG----G---------CC-------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------CCCcEEEEEEcCchH----h---------CC-------HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 125799999864400 0 00 01235689999999999999999877
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 144 ~ 144 (227)
T 1ve3_A 144 D 144 (227)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.72 E-value=1.3e-08 Score=105.72 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=86.4
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
++.+.++.+|||+|||+|..+..+++.+.. ...|+|+|+++..+..+++++...+. ++.+...|+..++.
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~- 86 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPE--------GSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL- 86 (284)
T ss_dssp TSCCCSCCEEEEETCTTTHHHHHHTTTSCT--------TCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC-
T ss_pred HhccCCCCeEEEecCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc-
Confidence 456678999999999999999998776421 36999999999999999998877665 78888888876531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|++... +..-++ ..++|..+.++|||||+++
T Consensus 87 ---------------------~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 87 ---------------------NDKYDIAICHAF------LLHMTT----------------PETMLQKMIHSVKKGGKII 123 (284)
T ss_dssp ---------------------SSCEEEEEEESC------GGGCSS----------------HHHHHHHHHHTEEEEEEEE
T ss_pred ---------------------CCCeeEEEECCh------hhcCCC----------------HHHHHHHHHHHcCCCCEEE
Confidence 157999998432 111111 1368999999999999999
Q ss_pred EEeCC
Q 004775 233 YSTCS 237 (731)
Q Consensus 233 YSTCS 237 (731)
.....
T Consensus 124 ~~~~~ 128 (284)
T 3gu3_A 124 CFEPH 128 (284)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88766
No 162
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.72 E-value=8.8e-08 Score=109.50 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=117.8
Q ss_pred ccCcEEecCccccchhhhcC----CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 56 EIGNITRQEAVSMVPPLFLD----VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd----~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
+.|.++--..++.+.+.++. +.++.+|||.|||+|+....++..+... +...++|+|+++..+.+++.|+
T Consensus 195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~------~~~~i~G~Eid~~~~~lA~~Nl 268 (542)
T 3lkd_A 195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQP------QTVVYFGQELNTSTYNLARMNM 268 (542)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCT------TTCEEEEEESCHHHHHHHHHHH
T ss_pred cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhc------cCceEEEEECcHHHHHHHHHHH
Confidence 46776665555555555555 6789999999999999999998887421 2468999999999999999999
Q ss_pred HHcCC--CceEEEecccccC--CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC--hh-hhhhccc
Q 004775 132 KRMCT--ANLIVTNHEAQHF--PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA--PD-IWRKWNV 204 (731)
Q Consensus 132 kRlg~--~ni~vt~~Da~~f--p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~--pd-~~~~w~~ 204 (731)
...|. .++.+.+.|+... |. ....+||+|+++||.++....... .+ .|..+.
T Consensus 269 ~l~gi~~~~~~I~~gDtL~~d~p~--------------------~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G- 327 (542)
T 3lkd_A 269 ILHGVPIENQFLHNADTLDEDWPT--------------------QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFG- 327 (542)
T ss_dssp HHTTCCGGGEEEEESCTTTSCSCC--------------------SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGS-
T ss_pred HHcCCCcCccceEecceecccccc--------------------cccccccEEEecCCcCCccccchhhhhhhhhhhhh-
Confidence 88887 5677888886543 21 113689999999999854321110 00 122111
Q ss_pred ccccchHHHHHHHHHHHHhhcc-CCCEEEEEeCC--CCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 205 GLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLK-pGG~LVYSTCS--l~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
....-...+...+.+++++|| +||++++.+-. +.-.-.+.-+.+.|-+...-..++.+
T Consensus 328 -~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~~II~L 388 (542)
T 3lkd_A 328 -KLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGL 388 (542)
T ss_dssp -SCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEEEEEEC
T ss_pred -hcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCceeEEEEc
Confidence 011112223468999999999 99999776543 22222256666666654432334544
No 163
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.72 E-value=4.5e-08 Score=98.96 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=80.8
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.++.+|||+|||+|..+..++..+. .+.|+++|+++..+..++++ .+++.+...|+..++
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~---------~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~--- 91 (259)
T 2p35_A 29 VPLERVLNGYDLGCGPGNSTELLTDRYG---------VNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK--- 91 (259)
T ss_dssp CCCSCCSSEEEETCTTTHHHHHHHHHHC---------TTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC---
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHhCC---------CCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC---
Confidence 3457889999999999999999988752 46899999999999888775 356788888876643
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++... +. |- .....+|..+.++|||||+++.
T Consensus 92 -------------------~~~~fD~v~~~~~------l~--------~~--------~~~~~~l~~~~~~L~pgG~l~~ 130 (259)
T 2p35_A 92 -------------------PAQKADLLYANAV------FQ--------WV--------PDHLAVLSQLMDQLESGGVLAV 130 (259)
T ss_dssp -------------------CSSCEEEEEEESC------GG--------GS--------TTHHHHHHHHGGGEEEEEEEEE
T ss_pred -------------------ccCCcCEEEEeCc------hh--------hC--------CCHHHHHHHHHHhcCCCeEEEE
Confidence 1257999998332 11 11 1134688999999999999999
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
++..
T Consensus 131 ~~~~ 134 (259)
T 2p35_A 131 QMPD 134 (259)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8754
No 164
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.71 E-value=9.9e-08 Score=95.47 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..+++. ...|+|+|+++..+..+.++. ...++.+...|+..++.
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~---- 112 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-----------GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF---- 112 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS----
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC----
Confidence 468899999999999999988775 258999999999988776653 34678888888776541
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
....||.|++-. ++.+-+ ...++|..+.++|||||+++.++
T Consensus 113 -----------------~~~~fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 113 -----------------ENEQFEAIMAIN------SLEWTE----------------EPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp -----------------CTTCEEEEEEES------CTTSSS----------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCCccEEEEcC------hHhhcc----------------CHHHHHHHHHHHhCCCeEEEEEE
Confidence 136899999732 221111 12367899999999999999998
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
...
T Consensus 154 ~~~ 156 (242)
T 3l8d_A 154 LGP 156 (242)
T ss_dssp ECT
T ss_pred cCC
Confidence 543
No 165
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.71 E-value=4.6e-08 Score=101.14 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=83.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
++..++.+|||+|||+|..+..++.. ...|+|+|+++..+..+++++...+. ++.+...|+..++.
T Consensus 116 ~~~~~~~~vLD~GcG~G~~~~~l~~~-----------g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-- 181 (286)
T 3m70_A 116 AKIISPCKVLDLGCGQGRNSLYLSLL-----------GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-- 181 (286)
T ss_dssp HHHSCSCEEEEESCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC--
T ss_pred hhccCCCcEEEECCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc--
Confidence 34458999999999999999988775 25899999999999999999998887 88888888776431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...||.|++..+. ..- . .....++|.++.++|||||++++
T Consensus 182 --------------------~~~fD~i~~~~~~------~~~-------~-------~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 182 --------------------QENYDFIVSTVVF------MFL-------N-------RERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp --------------------CSCEEEEEECSSG------GGS-------C-------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred --------------------cCCccEEEEccch------hhC-------C-------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 2679999985531 100 0 01235689999999999999776
Q ss_pred E
Q 004775 234 S 234 (731)
Q Consensus 234 S 234 (731)
.
T Consensus 222 ~ 222 (286)
T 3m70_A 222 V 222 (286)
T ss_dssp E
T ss_pred E
Confidence 4
No 166
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=97.19 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=84.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. + ...|+|+|+++..+..+++++.. .+++.+...|+..++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~-~---------~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~------ 102 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG-G---------FPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLD------ 102 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHT-T---------CCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCC------
T ss_pred CCCCeEEEECCCCcHHHHHHHHc-C---------CCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCC------
Confidence 67899999999999999988764 1 13799999999999998887653 357788888876643
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.....||.|++..+.... ...++. .|... ........++|..+.++|||||++++++.
T Consensus 103 ---------------~~~~~fD~v~~~~~~~~~--~~~~~~---~~~~~--~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 103 ---------------FPSASFDVVLEKGTLDAL--LAGERD---PWTVS--SEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp ---------------SCSSCEEEEEEESHHHHH--TTTCSC---TTSCC--HHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ---------------CCCCcccEEEECcchhhh--cccccc---ccccc--cchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 112579999986542100 000011 12211 01123457889999999999999999987
Q ss_pred CC
Q 004775 237 SM 238 (731)
Q Consensus 237 Sl 238 (731)
+.
T Consensus 161 ~~ 162 (215)
T 2pxx_A 161 AA 162 (215)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 167
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.70 E-value=9.9e-08 Score=93.22 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=91.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
+.+|||+|||+|..+..+++. ...|+|+|+++..+..++++ .+++.+...|+..++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-------- 97 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-----------GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLS-------- 97 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-----------TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGG--------
T ss_pred CCeEEEecCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccc--------
Confidence 889999999999999988775 24799999999998887765 346788888876643
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.....||.|++.. ++..-+ . .....+|..+.++|||||+++.++...
T Consensus 98 -------------~~~~~fD~v~~~~------~l~~~~-------~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 98 -------------DSPKRWAGLLAWY------SLIHMG-------P-------GELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp -------------GSCCCEEEEEEES------SSTTCC-------T-------TTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred -------------cCCCCeEEEEehh------hHhcCC-------H-------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 1236899999832 221111 0 123568899999999999999987654
Q ss_pred CC------------cCcHHHHHHHHHHCCCcEEEEec
Q 004775 239 NP------------VENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 239 ~p------------~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
.. .-...-+..+|++.| |+++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~ 179 (203)
T 3h2b_A 145 PSLEPMYHPVATAYRWPLPELAQALETAG--FQVTSS 179 (203)
T ss_dssp SSCEEECCSSSCEEECCHHHHHHHHHHTT--EEEEEE
T ss_pred CchhhhhchhhhhccCCHHHHHHHHHHCC--CcEEEE
Confidence 32 124677788888876 666665
No 168
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.2e-08 Score=101.13 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEecccccCCCccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--CTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl--g~~ni~vt~~Da~~fp~~~~ 154 (731)
.++.+|||+|||+|..+..+++.+. +...|+|+|+++..+..++++++.. ...++.+...|+..++...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 105 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELK--------PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG- 105 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSS--------CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC--------CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc-
Confidence 5799999999999999999998652 2579999999999999999998886 3568999999987754210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
+.......||.|++... + .| + ...++|..+.++|||||+|++.
T Consensus 106 --------------~~~~~~~~fD~V~~~~~------l--------~~-------~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 106 --------------ADSVDKQKIDMITAVEC------A--------HW-------F--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp --------------TTTTTSSCEEEEEEESC------G--------GG-------S--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------cccccCCCeeEEeHhhH------H--------HH-------h--CHHHHHHHHHHhcCCCcEEEEE
Confidence 00011268999998321 1 01 1 2346889999999999999986
Q ss_pred eCC
Q 004775 235 TCS 237 (731)
Q Consensus 235 TCS 237 (731)
+++
T Consensus 149 ~~~ 151 (299)
T 3g5t_A 149 GYA 151 (299)
T ss_dssp EEE
T ss_pred ecC
Confidence 554
No 169
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.69 E-value=3.6e-08 Score=102.91 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccCCCcccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~---~ni~vt~~Da~~fp~~~~~ 155 (731)
+.+|||+|||+|..+..+++. ...|+|+|+++..+..+++++...+. .++.+...|+..++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---- 147 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL-----------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---- 147 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT-----------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC----
T ss_pred CCcEEEEeccCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc----
Confidence 349999999999999988764 25799999999999999999887664 578899998877541
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...||.|+|.. + .+.-+. ...+.++|..+.++|||||+|+.++
T Consensus 148 ------------------~~~fD~v~~~~-----~-------~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 148 ------------------DKRFGTVVISS-----G-------SINELD-------EADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp ------------------SCCEEEEEECH-----H-------HHTTSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCcCEEEECC-----c-------ccccCC-------HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 26799998621 0 111000 1234678999999999999999998
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
....
T Consensus 191 ~~~~ 194 (299)
T 3g2m_A 191 AMSE 194 (299)
T ss_dssp ECCH
T ss_pred ecCc
Confidence 7754
No 170
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.67 E-value=4.3e-08 Score=95.88 Aligned_cols=112 Identities=12% Similarity=0.010 Sum_probs=82.4
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
...++.+|||+|||+|..++.++... ...|+|+|+|+..+..+++++...+ .++.+...|+..++.
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--- 85 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVED----------GYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--- 85 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHHT----------TCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS---
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHhC----------CCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC---
Confidence 34578999999999999866554331 3589999999999999999887766 457777777766431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
....||.|++.. ++.. +. .....+++..+.++|||||+++++
T Consensus 86 ------------------~~~~fD~v~~~~------~l~~-------~~-------~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 86 ------------------KDESMSFVYSYG------TIFH-------MR-------KNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp ------------------CTTCEEEEEECS------CGGG-------SC-------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCCceeEEEEcC------hHHh-------CC-------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 125799999732 1111 00 123467899999999999999999
Q ss_pred eCCC
Q 004775 235 TCSM 238 (731)
Q Consensus 235 TCSl 238 (731)
+.+.
T Consensus 128 ~~~~ 131 (209)
T 2p8j_A 128 FLTT 131 (209)
T ss_dssp EEET
T ss_pred Eecc
Confidence 8875
No 171
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.67 E-value=1.1e-07 Score=98.09 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=80.1
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
..+.+.++.+|||+|||+|..+..+++ . .+.|+++|+++..+..++.+. +++.+...|+..++.
T Consensus 51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~---------~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~ 114 (279)
T 3ccf_A 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--S---------GAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV 114 (279)
T ss_dssp HHHCCCTTCEEEEETCTTSHHHHHHHH--T---------TCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHh--C---------CCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc
Confidence 455678999999999999999999887 1 479999999999998877653 566777777766431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
...||.|++... +. |-+ ....+|..+.++|||||++
T Consensus 115 ----------------------~~~fD~v~~~~~------l~--------~~~--------d~~~~l~~~~~~LkpgG~l 150 (279)
T 3ccf_A 115 ----------------------DKPLDAVFSNAM------LH--------WVK--------EPEAAIASIHQALKSGGRF 150 (279)
T ss_dssp ----------------------SSCEEEEEEESC------GG--------GCS--------CHHHHHHHHHHHEEEEEEE
T ss_pred ----------------------CCCcCEEEEcch------hh--------hCc--------CHHHHHHHHHHhcCCCcEE
Confidence 257999997321 11 111 1246789999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+.++...
T Consensus 151 ~~~~~~~ 157 (279)
T 3ccf_A 151 VAEFGGK 157 (279)
T ss_dssp EEEEECT
T ss_pred EEEecCC
Confidence 9987653
No 172
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.66 E-value=1.5e-07 Score=95.09 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=81.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..+++. ...|+++|+|+..+..+++++...+. ++.+...|+..++.
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---- 102 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER-----------GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---- 102 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC----
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc----
Confidence 467889999999999999988764 25899999999999999999887765 67788888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...||.|+|... .... + -.....++|..+.++|||||+++..+
T Consensus 103 ------------------~~~fD~v~~~~~--~~~~----------~-------~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 103 ------------------KNEFDAVTMFFS--TIMY----------F-------DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp ------------------CSCEEEEEECSS--GGGG----------S-------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCccEEEEcCC--chhc----------C-------CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 147999997311 0000 0 01235678999999999999999764
No 173
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.66 E-value=1.7e-08 Score=102.25 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=79.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC-HHHHHHH---HHHHHHcCCCceEEEecccccCCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD-VQRCNLL---IHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid-~~R~~~L---~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+++++|||+|||+|..+..|+... +.+.|+|+|+| ...++.+ ++++++.+.+++.+...|+..+|.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~---------~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~ 92 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIND---------QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF 92 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTC---------TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh
Confidence 4689999999999999999987641 36899999999 4444444 666777788899999999887642
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
. ....||.|.+..|- |..... .......+|..+.++|||||++
T Consensus 93 ~--------------------~~d~v~~i~~~~~~---------~~~~~~--------~~~~~~~~l~~~~r~LkpGG~l 135 (225)
T 3p2e_A 93 E--------------------LKNIADSISILFPW---------GTLLEY--------VIKPNRDILSNVADLAKKEAHF 135 (225)
T ss_dssp G--------------------GTTCEEEEEEESCC---------HHHHHH--------HHTTCHHHHHHHHTTEEEEEEE
T ss_pred h--------------------ccCeEEEEEEeCCC---------cHHhhh--------hhcchHHHHHHHHHhcCCCcEE
Confidence 1 01457777765551 110000 0001245788999999999999
Q ss_pred EEEe
Q 004775 232 VYST 235 (731)
Q Consensus 232 VYST 235 (731)
+.++
T Consensus 136 ~i~~ 139 (225)
T 3p2e_A 136 EFVT 139 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9844
No 174
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.65 E-value=5.6e-08 Score=98.34 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=80.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
..+.++.+|||+|||+|..+..++.. .+.|+|+|+|+..+..+++++ ..+.+++.+...|+..++.
T Consensus 35 ~~~~~~~~vLDiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~-- 100 (263)
T 2yqz_A 35 HPKGEEPVFLELGVGTGRIALPLIAR-----------GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL-- 100 (263)
T ss_dssp CCSSSCCEEEEETCTTSTTHHHHHTT-----------TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--
T ss_pred cCCCCCCEEEEeCCcCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--
Confidence 35678999999999999999988764 368999999999999988876 3345688888888866431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++... +. |-+ ...++|..+.++|||||+++.
T Consensus 101 -------------------~~~~fD~v~~~~~------l~--------~~~--------~~~~~l~~~~~~L~pgG~l~~ 139 (263)
T 2yqz_A 101 -------------------PDESVHGVIVVHL------WH--------LVP--------DWPKVLAEAIRVLKPGGALLE 139 (263)
T ss_dssp -------------------CTTCEEEEEEESC------GG--------GCT--------THHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeeEEEECCc------hh--------hcC--------CHHHHHHHHHHHCCCCcEEEE
Confidence 1257999997321 11 110 124688999999999999998
Q ss_pred E
Q 004775 234 S 234 (731)
Q Consensus 234 S 234 (731)
+
T Consensus 140 ~ 140 (263)
T 2yqz_A 140 G 140 (263)
T ss_dssp E
T ss_pred E
Confidence 7
No 175
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.64 E-value=8.6e-08 Score=100.39 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
.++.+|||+|||+|..|..|+..+. ...|+|+|+|+..+..++++++..+
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~---------~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWG---------PSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTC---------CSEEEEEESCHHHHHHHHHTC----
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHHHHhhh
Confidence 4789999999999999999998753 3699999999999999988876544
No 176
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.63 E-value=5e-08 Score=103.19 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEecccccCCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----CTANLIVTNHEAQHFPG 151 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----g~~ni~vt~~Da~~fp~ 151 (731)
....+|||+|||.|+.+..++... +...|+++|+|+..++.+++++..+ ..+++.+...|+..+..
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~ 152 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK---------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN 152 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT---------TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHh
Confidence 346799999999999988887642 3578999999999999999998765 24578899999877531
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....+||+|++|++.. .| +. .+-...+.+..+.++|||||++
T Consensus 153 --------------------~~~~~fDvIi~D~~~p-~~-------------~~----~~l~~~~f~~~~~~~LkpgG~l 194 (294)
T 3adn_A 153 --------------------QTSQTFDVIISDCTDP-IG-------------PG----ESLFTSAFYEGCKRCLNPGGIF 194 (294)
T ss_dssp --------------------CCCCCEEEEEECC----------------------------CCHHHHHHHHHTEEEEEEE
T ss_pred --------------------hcCCCccEEEECCCCc-cC-------------cc----hhccHHHHHHHHHHhcCCCCEE
Confidence 1126799999998721 11 00 0111246788899999999999
Q ss_pred EEEeCC
Q 004775 232 VYSTCS 237 (731)
Q Consensus 232 VYSTCS 237 (731)
+..++|
T Consensus 195 v~~~~s 200 (294)
T 3adn_A 195 VAQNGV 200 (294)
T ss_dssp EEEEEE
T ss_pred EEecCC
Confidence 987665
No 177
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.63 E-value=2.8e-08 Score=105.58 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=72.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.|+++++.+|||+|||+|+.|..|++.+. .+.|+|+|+|+..++.++++++.++ .++.+.+.|+..++..
T Consensus 21 ~L~~~~g~~vLD~g~G~G~~s~~la~~~~---------~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 21 FLKPEDEKIILDCTVGEGGHSRAILEHCP---------GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFL 90 (301)
T ss_dssp HHCCCTTCEEEETTCTTSHHHHHHHHHCT---------TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHH
T ss_pred hcCCCCCCEEEEEeCCcCHHHHHHHHHCC---------CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHH
Confidence 45778999999999999999999998752 4799999999999999999998887 6899999887765321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
. .......||.|++|+|||.
T Consensus 91 l----------------~~~g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 91 L----------------KTLGIEKVDGILMDLGVST 110 (301)
T ss_dssp H----------------HHTTCSCEEEEEEECSCCH
T ss_pred H----------------HhcCCCCCCEEEEcCccch
Confidence 0 0001147999999999984
No 178
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.62 E-value=1e-07 Score=90.50 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=88.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+++.++.+|||+|||+|..+..+++. .+.|+++|+++..+..++++ .+++.+...| ..+
T Consensus 13 ~~~~~~~~vLDiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~---- 71 (170)
T 3i9f_A 13 IFEGKKGVIVDYGCGNGFYCKYLLEF-----------ATKLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI---- 71 (170)
T ss_dssp HHSSCCEEEEEETCTTCTTHHHHHTT-----------EEEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS----
T ss_pred cCcCCCCeEEEECCCCCHHHHHHHhh-----------cCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC----
Confidence 45788999999999999999888764 24899999999999888776 4577777776 211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++... +..-+ ....+|.++.++|||||+++.
T Consensus 72 -------------------~~~~~D~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~~ 110 (170)
T 3i9f_A 72 -------------------PDNSVDFILFANS------FHDMD----------------DKQHVISEVKRILKDDGRVII 110 (170)
T ss_dssp -------------------CTTCEEEEEEESC------STTCS----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCceEEEEEccc------hhccc----------------CHHHHHHHHHHhcCCCCEEEE
Confidence 1267999997432 11111 124688999999999999999
Q ss_pred EeCCCCCcC---------cHHHHHHHHHHCCCcEEEEecC
Q 004775 234 STCSMNPVE---------NEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 234 STCSl~p~E---------NEaVV~~~L~~~~g~~elvd~s 264 (731)
++....... ....+..+|+ .|+++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----Gf~~~~~~ 146 (170)
T 3i9f_A 111 IDWRKENTGIGPPLSIRMDEKDYMGWFS----NFVVEKRF 146 (170)
T ss_dssp EEECSSCCSSSSCGGGCCCHHHHHHHTT----TEEEEEEE
T ss_pred EEcCccccccCchHhhhcCHHHHHHHHh----CcEEEEcc
Confidence 876543222 2445566665 26666653
No 179
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.62 E-value=8.7e-08 Score=101.49 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=74.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEecccccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA------NLIVTNHEAQHFP 150 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~------ni~vt~~Da~~fp 150 (731)
.++.+|||+|||+|+-+..++.. ..+.|+|+|+|+..++.++.+....+.. ++.+...|... +
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~----------~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~-d 115 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG----------EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRS-D 115 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTS-S
T ss_pred CCCCeEEEEecCCcHhHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhccc-c
Confidence 46889999999999866554432 1368999999999999999988766542 23344444321 0
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
.... ..........||+|+|-- .+ +.-|... + +..+|+++.++|||||+
T Consensus 116 ~~~~------------~l~~~~~~~~FD~V~~~~------~l------hy~~~~~-----~--~~~~l~~~~r~LkpGG~ 164 (302)
T 2vdw_A 116 TFVS------------SVREVFYFGKFNIIDWQF------AI------HYSFHPR-----H--YATVMNNLSELTASGGK 164 (302)
T ss_dssp SHHH------------HHHTTCCSSCEEEEEEES------CG------GGTCSTT-----T--HHHHHHHHHHHEEEEEE
T ss_pred hhhh------------hhhccccCCCeeEEEECc------hH------HHhCCHH-----H--HHHHHHHHHHHcCCCCE
Confidence 0000 000001236899998721 11 0011111 1 25789999999999999
Q ss_pred EEEEeCC
Q 004775 231 IVYSTCS 237 (731)
Q Consensus 231 LVYSTCS 237 (731)
++.+|+.
T Consensus 165 ~i~~~~~ 171 (302)
T 2vdw_A 165 VLITTMD 171 (302)
T ss_dssp EEEEEEC
T ss_pred EEEEeCC
Confidence 9999864
No 180
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.61 E-value=1.2e-07 Score=104.85 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=81.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-------HcCC--CceEEEe
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-------RMCT--ANLIVTN 143 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k-------Rlg~--~ni~vt~ 143 (731)
.+++++|++|||+|||.|..+.++|... +.+.|+|+|+++..+.+++.+++ .+|. .++.+.+
T Consensus 168 ~l~l~~gd~VLDLGCGtG~l~l~lA~~~---------g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 168 EIKMTDDDLFVDLGSGVGQVVLQVAAAT---------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHHHC---------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 4578999999999999999999998753 23579999999999888887653 3454 6899999
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
+|+..+|. ......||+|++..+|- .|+ ....|...++
T Consensus 239 GD~~~lp~-------------------~d~~~~aDVVf~Nn~~F-------~pd----------------l~~aL~Ei~R 276 (438)
T 3uwp_A 239 GDFLSEEW-------------------RERIANTSVIFVNNFAF-------GPE----------------VDHQLKERFA 276 (438)
T ss_dssp CCTTSHHH-------------------HHHHHTCSEEEECCTTC-------CHH----------------HHHHHHHHHT
T ss_pred CcccCCcc-------------------ccccCCccEEEEccccc-------Cch----------------HHHHHHHHHH
Confidence 99876431 00114699999876531 111 1234566789
Q ss_pred hccCCCEEEEE
Q 004775 224 LLKVGGRIVYS 234 (731)
Q Consensus 224 lLKpGG~LVYS 234 (731)
.|||||+||.+
T Consensus 277 vLKPGGrIVss 287 (438)
T 3uwp_A 277 NMKEGGRIVSS 287 (438)
T ss_dssp TSCTTCEEEES
T ss_pred cCCCCcEEEEe
Confidence 99999999965
No 181
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.61 E-value=9.2e-08 Score=102.82 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=88.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~ 152 (731)
+.+.++.+|||+|||+|..+..+++. +.+.|+|+|+++ .+..++++++..+. .++.+...|+..++.
T Consensus 60 ~~~~~~~~VLDiGcGtG~ls~~la~~----------g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 127 (340)
T 2fyt_A 60 PHIFKDKVVLDVGCGTGILSMFAAKA----------GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL- 127 (340)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-
T ss_pred hhhcCCCEEEEeeccCcHHHHHHHHc----------CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC-
Confidence 34578899999999999998888764 135899999996 89999999988887 689999988876431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...+||.|+++.... .. .+ ......+|..+.++|||||+++
T Consensus 128 --------------------~~~~~D~Ivs~~~~~--~l--~~---------------~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 --------------------PVEKVDVIISEWMGY--FL--LF---------------ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp --------------------SCSCEEEEEECCCBT--TB--TT---------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCcEEEEEEcCchh--hc--cC---------------HHHHHHHHHHHHhhcCCCcEEE
Confidence 125799999865211 00 00 0122357888889999999999
Q ss_pred EEeCCC--CCcCcHHH
Q 004775 233 YSTCSM--NPVENEAV 246 (731)
Q Consensus 233 YSTCSl--~p~ENEaV 246 (731)
.+.|++ .+.++...
T Consensus 169 p~~~~~~~~~~~~~~~ 184 (340)
T 2fyt_A 169 PDICTISLVAVSDVNK 184 (340)
T ss_dssp SCEEEEEEEEECCHHH
T ss_pred cccceEEEEEecchhH
Confidence 665553 34565544
No 182
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.60 E-value=1.4e-07 Score=107.98 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=111.7
Q ss_pred cccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCC-CCC-----CCCeEEEEEeCCHHHHHHHH
Q 004775 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTN-PGA-----LPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~-~~~-----~p~G~VvAnDid~~R~~~L~ 128 (731)
...|.++--..++.+.+.+++++++ +|||.|||+|+..++++..+..... ... .....|+|+|+++..+.+++
T Consensus 222 k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 222 KQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp CCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred ccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 4567777666666677777888887 9999999999999988876642100 000 00358999999999999999
Q ss_pred HHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc-
Q 004775 129 HQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL- 206 (731)
Q Consensus 129 ~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~- 206 (731)
.|+...|.. ++.+.+.|+...+ .....+||+||++||.+...........-.+|..+.
T Consensus 301 ~Nl~l~gi~~~i~i~~gDtL~~~--------------------~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~ 360 (544)
T 3khk_A 301 MNMVIRGIDFNFGKKNADSFLDD--------------------QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTN 360 (544)
T ss_dssp HHHHHTTCCCBCCSSSCCTTTSC--------------------SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC
T ss_pred HHHHHhCCCcccceeccchhcCc--------------------ccccccccEEEECCCcCCccccchhhhhhhhhhcCcc
Confidence 998877764 2222344432211 112368999999999986432111000001222110
Q ss_pred ------ccchHHHHHHHHHHHHhhccCCCEEEEEeCC--CCCc-CcHHHHHHHHHHCC
Q 004775 207 ------GNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPV-ENEAVVAEILRKCE 255 (731)
Q Consensus 207 ------~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS--l~p~-ENEaVV~~~L~~~~ 255 (731)
...-...+...+.+++++||+||++++.+-. +.-. -.+.-+.+.|-+.+
T Consensus 361 ~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~ 418 (544)
T 3khk_A 361 GEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQD 418 (544)
T ss_dssp --CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTT
T ss_pred cccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCC
Confidence 1111223446889999999999998877532 2222 35666777766554
No 183
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.59 E-value=1.9e-07 Score=96.35 Aligned_cols=136 Identities=11% Similarity=0.031 Sum_probs=89.6
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-----------------cCCC
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-----------------MCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR-----------------lg~~ 137 (731)
.+.++.+|||++||+|.-+..||+. ...|+|+|+|+..++.++++... ....
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-----------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-----------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG 133 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-----------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence 3468899999999999999988874 24899999999999888654321 0125
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004775 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (731)
Q Consensus 138 ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I 217 (731)
++.+.+.|+..++. .....||.|++-. ++-.-|. ....++
T Consensus 134 ~i~~~~~D~~~l~~--------------------~~~~~FD~V~~~~------~l~~l~~--------------~~~~~~ 173 (252)
T 2gb4_A 134 SISLYCCSIFDLPR--------------------ANIGKFDRIWDRG------ALVAINP--------------GDHDRY 173 (252)
T ss_dssp SEEEEESCTTTGGG--------------------GCCCCEEEEEESS------STTTSCG--------------GGHHHH
T ss_pred ceEEEECccccCCc--------------------ccCCCEEEEEEhh------hhhhCCH--------------HHHHHH
Confidence 68888888776431 0115799999521 1111110 123467
Q ss_pred HHHHHhhccCCCEEEEEeCCCCCc--------CcHHHHHHHHHHCCCcEEEEecC
Q 004775 218 AMRGISLLKVGGRIVYSTCSMNPV--------ENEAVVAEILRKCEGSVELVDVS 264 (731)
Q Consensus 218 L~rAl~lLKpGG~LVYSTCSl~p~--------ENEaVV~~~L~~~~g~~elvd~s 264 (731)
+.++.++|||||+++..|....+. -.++-+..++.. .|+++.+.
T Consensus 174 l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~---~f~v~~~~ 225 (252)
T 2gb4_A 174 ADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT---KCSMQCLE 225 (252)
T ss_dssp HHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT---TEEEEEEE
T ss_pred HHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC---CeEEEEEe
Confidence 889999999999998665443211 134556666654 26666653
No 184
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.59 E-value=1.3e-07 Score=101.71 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=91.7
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~ 152 (731)
+...++.+|||+|||+|..+..+++. +.+.|+|+|+++ .+..++++++..+. .++.+...|+..++.
T Consensus 46 l~~~~~~~VLDiGcGtG~ls~~la~~----------g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~- 113 (348)
T 2y1w_A 46 HTDFKDKIVLDVGCGSGILSFFAAQA----------GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL- 113 (348)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-
T ss_pred cccCCcCEEEEcCCCccHHHHHHHhC----------CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-
Confidence 44568999999999999999888764 246999999996 77888888888887 578898888766421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
..+||+|+++.+....+ + ......+..+.++|||||+++
T Consensus 114 ---------------------~~~~D~Ivs~~~~~~~~----~----------------~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 114 ---------------------PEQVDIIISEPMGYMLF----N----------------ERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp ---------------------SSCEEEEEECCCBTTBT----T----------------TSHHHHHHHGGGGEEEEEEEE
T ss_pred ---------------------CCceeEEEEeCchhcCC----h----------------HHHHHHHHHHHhhcCCCeEEE
Confidence 14799999875521110 0 112345667889999999999
Q ss_pred EEeCCCC--CcCcHHHHHHHHH
Q 004775 233 YSTCSMN--PVENEAVVAEILR 252 (731)
Q Consensus 233 YSTCSl~--p~ENEaVV~~~L~ 252 (731)
.+++++. |.+.+..-.+.+.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~ 174 (348)
T 2y1w_A 153 PTIGDVHLAPFTDEQLYMEQFT 174 (348)
T ss_dssp SCEEEEEEEEECCHHHHHHHHH
T ss_pred EecCcEEEEEecchHHhhhhcc
Confidence 8877754 6677765544443
No 185
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.59 E-value=5.2e-08 Score=101.96 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=82.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----------CCCceEEEecc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----------CTANLIVTNHE 145 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----------g~~ni~vt~~D 145 (731)
..+.+|||+|||.|+.+..++.. +.+.|+++|+|+..++.+++++ ++ ..+++.+...|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~----------~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D 142 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH----------DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGD 142 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----------CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECc
Confidence 45679999999999998888654 2479999999999999999887 44 23578888888
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
+..+.. . ...||.|++|+|+. .|. + ..+ .+.+++..+.++|
T Consensus 143 ~~~~l~--------------------~-~~~fD~Ii~d~~~~-~~~----~-----------~~l--~~~~~l~~~~~~L 183 (281)
T 1mjf_A 143 GFEFIK--------------------N-NRGFDVIIADSTDP-VGP----A-----------KVL--FSEEFYRYVYDAL 183 (281)
T ss_dssp HHHHHH--------------------H-CCCEEEEEEECCCC-C--------------------T--TSHHHHHHHHHHE
T ss_pred hHHHhc--------------------c-cCCeeEEEECCCCC-CCc----c-----------hhh--hHHHHHHHHHHhc
Confidence 765310 1 25799999999852 111 0 011 1356788899999
Q ss_pred cCCCEEEEEeCCC
Q 004775 226 KVGGRIVYSTCSM 238 (731)
Q Consensus 226 KpGG~LVYSTCSl 238 (731)
+|||+++..+++.
T Consensus 184 ~pgG~lv~~~~~~ 196 (281)
T 1mjf_A 184 NNPGIYVTQAGSV 196 (281)
T ss_dssp EEEEEEEEEEEET
T ss_pred CCCcEEEEEcCCc
Confidence 9999999987664
No 186
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.58 E-value=1.8e-07 Score=93.14 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=74.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+++. ...|+++|+++..+..++++... ++.+...|+..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~------ 99 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-----------FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ------ 99 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-----------CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC------
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-----------CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC------
Confidence 46789999999999998888653 23699999999998887765432 6778888776531
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH-hhccCCCEEEEEe
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI-SLLKVGGRIVYST 235 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl-~lLKpGG~LVYST 235 (731)
....||.|++-- ++.+-++ ..++|+.+. ++|||||+|+.++
T Consensus 100 ----------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 100 ----------------LPRRYDNIVLTH------VLEHIDD----------------PVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ----------------CSSCEEEEEEES------CGGGCSS----------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ----------------cCCcccEEEEhh------HHHhhcC----------------HHHHHHHHHHHhcCCCCEEEEEc
Confidence 126799999721 2211111 146889999 9999999999987
Q ss_pred CC
Q 004775 236 CS 237 (731)
Q Consensus 236 CS 237 (731)
..
T Consensus 142 ~~ 143 (250)
T 2p7i_A 142 PN 143 (250)
T ss_dssp EC
T ss_pred CC
Confidence 44
No 187
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.58 E-value=2.2e-07 Score=92.90 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+.++.+|||+|||+|..+..++.. ..|+++|+++..+..+++++...+ .++.+...|+..++.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~------------~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---- 93 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH------------YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---- 93 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT------------SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC----
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC------------CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC----
Confidence 356789999999999988877542 579999999999999999988776 467778887765431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...||.|++... ++..- .-.....++|..+.++|||||+++.++
T Consensus 94 ------------------~~~fD~v~~~~~-----~~~~~-------------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 94 ------------------PEPVDAITILCD-----SLNYL-------------QTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp ------------------SSCEEEEEECTT-----GGGGC-------------CSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCcCEEEEeCC-----chhhc-------------CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 157999997421 11000 001234568899999999999999876
Q ss_pred CC
Q 004775 236 CS 237 (731)
Q Consensus 236 CS 237 (731)
.+
T Consensus 138 ~~ 139 (243)
T 3d2l_A 138 HS 139 (243)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 188
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.57 E-value=9e-08 Score=103.20 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=87.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..+++. +.+.|+|+|++ ..+..++++++..+..+ +.+...|+..++.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~----------g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--- 129 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA----------GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL--- 129 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT----------TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC---
T ss_pred cCCCCEEEEEeccchHHHHHHHHC----------CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC---
Confidence 457899999999999999888775 24699999999 59999999999888765 8899998877531
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...+||.|+++....... . ......+|..+.++|||||+++.+
T Consensus 130 ------------------~~~~fD~Iis~~~~~~l~----~---------------~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 130 ------------------PVEKVDIIISEWMGYCLF----Y---------------ESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ------------------SSSCEEEEEECCCBBTBT----B---------------TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ------------------CCCceEEEEEcccccccc----C---------------chhHHHHHHHHHHhCCCCCEEccc
Confidence 126899999975421110 0 011235677888999999999977
Q ss_pred eCCC--CCcCcHH
Q 004775 235 TCSM--NPVENEA 245 (731)
Q Consensus 235 TCSl--~p~ENEa 245 (731)
.+++ .+.+...
T Consensus 173 ~~~~~~~~~~~~~ 185 (349)
T 3q7e_A 173 RATLYVTAIEDRQ 185 (349)
T ss_dssp EEEEEEEEECCHH
T ss_pred cceEEEeeecChh
Confidence 6664 3444443
No 189
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.56 E-value=1.1e-07 Score=99.53 Aligned_cols=114 Identities=16% Similarity=0.081 Sum_probs=83.9
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecccccCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGC 152 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg----~~ni~vt~~Da~~fp~~ 152 (731)
.++.+|||+|||.|+.+..++... +...|+++|+|+..++.+++++..++ .+++.+...|+..+..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~- 146 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK---------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE- 146 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH-
Confidence 456899999999999988886531 35799999999999999998876543 4678888888876421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....+||+|++|++.. .|. . ..+ ...+++..+.++|+|||+++
T Consensus 147 -------------------~~~~~fD~Ii~d~~~~-~~~-------------~--~~l--~~~~~l~~~~~~L~pgG~lv 189 (283)
T 2i7c_A 147 -------------------NVTNTYDVIIVDSSDP-IGP-------------A--ETL--FNQNFYEKIYNALKPNGYCV 189 (283)
T ss_dssp -------------------HCCSCEEEEEEECCCT-TTG-------------G--GGG--SSHHHHHHHHHHEEEEEEEE
T ss_pred -------------------hCCCCceEEEEcCCCC-CCc-------------c--hhh--hHHHHHHHHHHhcCCCcEEE
Confidence 0136799999998632 111 0 011 12567889999999999999
Q ss_pred EEeCC
Q 004775 233 YSTCS 237 (731)
Q Consensus 233 YSTCS 237 (731)
..+++
T Consensus 190 ~~~~~ 194 (283)
T 2i7c_A 190 AQCES 194 (283)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98776
No 190
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.56 E-value=4.4e-08 Score=102.14 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=70.0
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEE--ecccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA------NLIVT--NHEAQ 147 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~------ni~vt--~~Da~ 147 (731)
+++|.+|||+|||||++|..+++. +.|+|+|+++. +.. ++..... ++.+. ..|+.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~------------~~V~gvD~s~m-~~~----a~~~~~~~~~~~~~v~~~~~~~D~~ 134 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR------------PHVMDVRAYTL-GVG----GHEVPRITESYGWNIVKFKSRVDIH 134 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS------------TTEEEEEEECC-CCS----SCCCCCCCCBTTGGGEEEECSCCTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc------------CcEEEEECchh-hhh----hhhhhhhhhccCCCeEEEecccCHh
Confidence 578999999999999999888653 57999999873 111 1111111 56666 66766
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
.++ ...||.|+||.. ...|. +.. -+..+.++|..+.++|||
T Consensus 135 ~l~-----------------------~~~fD~V~sd~~-~~~~~----~~~-----------d~~~~l~~L~~~~r~Lkp 175 (265)
T 2oxt_A 135 TLP-----------------------VERTDVIMCDVG-ESSPK----WSV-----------ESERTIKILELLEKWKVK 175 (265)
T ss_dssp TSC-----------------------CCCCSEEEECCC-CCCSC----HHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HCC-----------------------CCCCcEEEEeCc-ccCCc----cch-----------hHHHHHHHHHHHHHHhcc
Confidence 543 257999999976 32231 100 011122378888999999
Q ss_pred CC--EEEEEeCC
Q 004775 228 GG--RIVYSTCS 237 (731)
Q Consensus 228 GG--~LVYSTCS 237 (731)
|| .+|..+-.
T Consensus 176 GG~~~fv~kv~~ 187 (265)
T 2oxt_A 176 NPSADFVVKVLC 187 (265)
T ss_dssp CTTCEEEEEESC
T ss_pred CCCeEEEEEeCC
Confidence 99 99886543
No 191
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.55 E-value=9.7e-08 Score=95.72 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=81.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~-fp~~~~ 154 (731)
+.++.+|||+|||+|..+..+++. ...|+|+|+++..+..++++ .+++.+...|+.. +|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---- 105 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ-----------AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP---- 105 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC----
Confidence 468999999999999999888765 35899999999999888776 4578888888743 22
Q ss_pred CCCCCCCCccccccccccc-cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMG-QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.. ...||.|++.. + +..+|..+.++|||||+|+.
T Consensus 106 -----------------~~~~~~fD~v~~~~----------~------------------~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 106 -----------------AGLGAPFGLIVSRR----------G------------------PTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp -----------------TTCCCCEEEEEEES----------C------------------CSGGGGGHHHHEEEEEEEEE
T ss_pred -----------------CcCCCCEEEEEeCC----------C------------------HHHHHHHHHHHcCCCcEEEE
Confidence 11 26799999741 0 12346677889999999993
Q ss_pred EeCCCCCcCcHHHHHHHHHHCCC
Q 004775 234 STCSMNPVENEAVVAEILRKCEG 256 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~g 256 (731)
... ..+...+...|++.|-
T Consensus 141 ~~~----~~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 141 VGP----RLNVPEVPERLAAVGW 159 (226)
T ss_dssp EES----SSCCTHHHHHHHHTTC
T ss_pred eCC----cCCHHHHHHHHHHCCC
Confidence 322 2344457788888763
No 192
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.55 E-value=1.4e-07 Score=92.75 Aligned_cols=106 Identities=14% Similarity=0.011 Sum_probs=73.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
...++.+|||+|||+|..+..+++. ...|+|+|+++..+..++++ .++.+...++..+....
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~- 110 (227)
T 3e8s_A 49 LGRQPERVLDLGCGEGWLLRALADR-----------GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAK- 110 (227)
T ss_dssp HHTCCSEEEEETCTTCHHHHHHHTT-----------TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTC-
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHHC-----------CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccc-
Confidence 3456799999999999999888764 25899999999998877765 34445555555431100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
......||.|++..... .+ ....+|..+.++|||||+|+.+
T Consensus 111 ----------------~~~~~~fD~v~~~~~l~-------~~----------------~~~~~l~~~~~~L~pgG~l~~~ 151 (227)
T 3e8s_A 111 ----------------VPVGKDYDLICANFALL-------HQ----------------DIIELLSAMRTLLVPGGALVIQ 151 (227)
T ss_dssp ----------------SCCCCCEEEEEEESCCC-------SS----------------CCHHHHHHHHHTEEEEEEEEEE
T ss_pred ----------------cccCCCccEEEECchhh-------hh----------------hHHHHHHHHHHHhCCCeEEEEE
Confidence 01124699999843211 11 1135788999999999999998
Q ss_pred eCC
Q 004775 235 TCS 237 (731)
Q Consensus 235 TCS 237 (731)
+-.
T Consensus 152 ~~~ 154 (227)
T 3e8s_A 152 TLH 154 (227)
T ss_dssp ECC
T ss_pred ecC
Confidence 753
No 193
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.55 E-value=2.7e-07 Score=102.64 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=81.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH-------HHHHHHcC--CCceEEEe
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL-------IHQTKRMC--TANLIVTN 143 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L-------~~n~kRlg--~~ni~vt~ 143 (731)
.+++.++++|||+|||+|..+..+|...+ .+.|+|+|+++..+..+ +.+++++| ..++.+..
T Consensus 237 ~l~l~~g~~VLDLGCGsG~la~~LA~~~g---------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 237 QCQLKKGDTFMDLGSGVGNCVVQAALECG---------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HTTCCTTCEEEEESCTTSHHHHHHHHHHC---------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 35788999999999999999999998753 36899999999998888 88888888 56888877
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
+|+..-+. +.......||+|++...+- .++ ....|....+
T Consensus 308 gD~~~~~~-----------------~~~~~~~~FDvIvvn~~l~-------~~d----------------~~~~L~el~r 347 (433)
T 1u2z_A 308 KKSFVDNN-----------------RVAELIPQCDVILVNNFLF-------DED----------------LNKKVEKILQ 347 (433)
T ss_dssp SSCSTTCH-----------------HHHHHGGGCSEEEECCTTC-------CHH----------------HHHHHHHHHT
T ss_pred cCcccccc-----------------ccccccCCCCEEEEeCccc-------ccc----------------HHHHHHHHHH
Confidence 65432100 0000125799999753310 011 1245678899
Q ss_pred hccCCCEEEEE
Q 004775 224 LLKVGGRIVYS 234 (731)
Q Consensus 224 lLKpGG~LVYS 234 (731)
.|||||+||.+
T Consensus 348 ~LKpGG~lVi~ 358 (433)
T 1u2z_A 348 TAKVGCKIISL 358 (433)
T ss_dssp TCCTTCEEEES
T ss_pred hCCCCeEEEEe
Confidence 99999999875
No 194
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.55 E-value=1.1e-07 Score=98.36 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=83.9
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEecccccC
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----ANLIVTNHEAQHF 149 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~----~ni~vt~~Da~~f 149 (731)
+...++.+|||+|||+|..+..+++. ...|+|+|+|+..+..+++++...+. .++.+...|+..+
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (293)
T 3thr_A 53 LRQHGCHRVLDVACGTGVDSIMLVEE-----------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 121 (293)
T ss_dssp HHHTTCCEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred hcccCCCEEEEecCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence 44567899999999999999988775 24899999999999999888754332 3567777776553
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+.- ......||.|+|- |. ++.+-++.+ .-.....++|.++.++|||||
T Consensus 122 ~~~------------------~~~~~~fD~V~~~----g~-~l~~~~~~~---------~~~~~~~~~l~~~~~~LkpgG 169 (293)
T 3thr_A 122 DKD------------------VPAGDGFDAVICL----GN-SFAHLPDSK---------GDQSEHRLALKNIASMVRPGG 169 (293)
T ss_dssp HHH------------------SCCTTCEEEEEEC----TT-CGGGSCCSS---------SSSHHHHHHHHHHHHTEEEEE
T ss_pred ccc------------------cccCCCeEEEEEc----Ch-HHhhcCccc---------cCHHHHHHHHHHHHHHcCCCe
Confidence 210 0123689999972 11 111111110 011234678999999999999
Q ss_pred EEEEEeCCC
Q 004775 230 RIVYSTCSM 238 (731)
Q Consensus 230 ~LVYSTCSl 238 (731)
+++.+++..
T Consensus 170 ~l~~~~~~~ 178 (293)
T 3thr_A 170 LLVIDHRNY 178 (293)
T ss_dssp EEEEEEECH
T ss_pred EEEEEeCCH
Confidence 999998763
No 195
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.55 E-value=3.7e-07 Score=91.91 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=87.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.+.++.+|||+|||+|..+..+++. ...|+++|+|+..+..++.+ +.+...|+..+..
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~--- 95 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEE-----------GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLK--- 95 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHH-----------TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHH---
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhC-----------CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhh---
Confidence 4578899999999999999888775 24699999999998877654 4566666554310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
......||+|++. +++..-++ .....+|..+.++|||||+++.+
T Consensus 96 ----------------~~~~~~fD~i~~~------~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 96 ----------------SLPDKYLDGVMIS------HFVEHLDP--------------ERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp ----------------TSCTTCBSEEEEE------SCGGGSCG--------------GGHHHHHHHHHHHBCTTCCEEEE
T ss_pred ----------------hcCCCCeeEEEEC------CchhhCCc--------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 1123689999972 22221110 11256889999999999999998
Q ss_pred eCCCCC---------------cCcHHHHHHHHHHCCCcEEEEec
Q 004775 235 TCSMNP---------------VENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 235 TCSl~p---------------~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+..... .-...-+..+|++.| |+++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG--f~~~~~ 181 (240)
T 3dli_A 140 SPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLG--FRDVKI 181 (240)
T ss_dssp EECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHT--CEEEEE
T ss_pred eCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCC--CeEEEE
Confidence 765321 123456677888876 444444
No 196
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.55 E-value=2.5e-07 Score=96.41 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=74.2
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
.+.+.++.+|||+|||+|..|..|++. .+.|+|+|+|+..++.+++++... .+ +.+...++.-
T Consensus 40 ~l~l~~g~~VLDlGcGtG~~a~~La~~-----------g~~V~gvD~S~~ml~~Ar~~~~~~---~v---~~~~~~~~~~ 102 (261)
T 3iv6_A 40 LENIVPGSTVAVIGASTRFLIEKALER-----------GASVTVFDFSQRMCDDLAEALADR---CV---TIDLLDITAE 102 (261)
T ss_dssp TTTCCTTCEEEEECTTCHHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHTSSS---CC---EEEECCTTSC
T ss_pred hcCCCCcCEEEEEeCcchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHhc---cc---eeeeeecccc
Confidence 457789999999999999999998874 368999999999999998876533 11 2222222110
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. .......||.|+++.. + ..|. ......++....++| |||+|+
T Consensus 103 -~---------------~~~~~~~fD~Vv~~~~------l-------~~~~-------~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 103 -I---------------PKELAGHFDFVLNDRL------I-------NRFT-------TEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp -C---------------CGGGTTCCSEEEEESC------G-------GGSC-------HHHHHHHHHHHHHHH-TTSEEE
T ss_pred -c---------------ccccCCCccEEEEhhh------h-------HhCC-------HHHHHHHHHHHHHhC-cCcEEE
Confidence 0 0011257999998543 1 1111 123456788888999 999999
Q ss_pred EEeC
Q 004775 233 YSTC 236 (731)
Q Consensus 233 YSTC 236 (731)
.|..
T Consensus 146 lS~~ 149 (261)
T 3iv6_A 146 ASVK 149 (261)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8843
No 197
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.55 E-value=9.3e-08 Score=99.88 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=82.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCcc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~~ 153 (731)
.+.+|||+|||.|+.+..++... +...|+++|+|+..++.+++++..+ ..+++.+...|+..+..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-- 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP---------SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-- 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT---------TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH--
T ss_pred CCCEEEEECCchHHHHHHHHhCC---------CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh--
Confidence 46799999999999888776531 2479999999999999999987653 24679999999876411
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....+||+|++|+|. ..+. + ..| ...+++..+.++|||||++|.
T Consensus 144 ------------------~~~~~fD~Ii~d~~~-~~~~----~-----------~~l--~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 144 ------------------KSENQYDVIMVDSTE-PVGP----A-----------VNL--FTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp ------------------TCCSCEEEEEESCSS-CCSC----C-----------CCC--STTHHHHHHHHHEEEEEEEEE
T ss_pred ------------------hCCCCeeEEEECCCC-CCCc----c-----------hhh--hHHHHHHHHHHhcCCCcEEEE
Confidence 012579999999874 1121 0 011 123578888999999999998
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
.+.+
T Consensus 188 ~~~~ 191 (275)
T 1iy9_A 188 QTDN 191 (275)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8655
No 198
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.55 E-value=3.1e-07 Score=93.93 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=83.0
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHH------HHHHHHHHHHHcCC-CceEEEecc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ------RCNLLIHQTKRMCT-ANLIVTNHE 145 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~------R~~~L~~n~kRlg~-~ni~vt~~D 145 (731)
.+++.++.+|||+|||+|..+..++...+ +.+.|+++|+++. .+..++++++..+. .++.+...|
T Consensus 38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~g--------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 38 AWQVKPGEKILEIGCGQGDLSAVLADQVG--------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHHHHHC--------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 45678999999999999999999988753 2479999999997 88899888887776 578888877
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
.+.... .......||.|++... +...++ . ..++.....++
T Consensus 110 --~~~~~~----------------~~~~~~~fD~v~~~~~------l~~~~~---------------~-~~~~~~~~~l~ 149 (275)
T 3bkx_A 110 --NLSDDL----------------GPIADQHFDRVVLAHS------LWYFAS---------------A-NALALLFKNMA 149 (275)
T ss_dssp --CTTTCC----------------GGGTTCCCSEEEEESC------GGGSSC---------------H-HHHHHHHHHHT
T ss_pred --hhhhcc----------------CCCCCCCEEEEEEccc------hhhCCC---------------H-HHHHHHHHHHh
Confidence 111000 1122368999997432 111111 0 12455556677
Q ss_pred cCCCEEEEEeCCCC
Q 004775 226 KVGGRIVYSTCSMN 239 (731)
Q Consensus 226 KpGG~LVYSTCSl~ 239 (731)
++||+++.++.+..
T Consensus 150 ~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 150 AVCDHVDVAEWSMQ 163 (275)
T ss_dssp TTCSEEEEEEECSS
T ss_pred CCCCEEEEEEecCC
Confidence 77999999876654
No 199
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.54 E-value=4.9e-07 Score=92.13 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=75.6
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++.. ...|+++|+++..+..+++++ .++.+...|+..++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----- 107 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-----------FGTVEGLELSADMLAIARRRN-----PDAVLHHGDMRDFSL----- 107 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-----------SSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTCCC-----
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhC-----CCCEEEECChHHCCc-----
Confidence 46789999999999998888654 247999999999998887753 267788888776531
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...||.|+|.. +++..-++ .....++|..+.++|||||+++.++
T Consensus 108 -----------------~~~fD~v~~~~-----~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 108 -----------------GRRFSAVTCMF-----SSIGHLAG-------------QAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp -----------------SCCEEEEEECT-----TGGGGSCH-------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -----------------cCCcCEEEEcC-----chhhhcCC-------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 26799999732 01211110 1234578999999999999999874
No 200
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.54 E-value=1.5e-07 Score=94.05 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=78.7
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
++...++.+|||+|||+|..+..++.. + .+.|+++|+++..+..++++.. ..++.+...|+..++.
T Consensus 38 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~---------~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~- 103 (243)
T 3bkw_A 38 MLPEVGGLRIVDLGCGFGWFCRWAHEH-G---------ASYVLGLDLSEKMLARARAAGP---DTGITYERADLDKLHL- 103 (243)
T ss_dssp HSCCCTTCEEEEETCTTCHHHHHHHHT-T---------CSEEEEEESCHHHHHHHHHTSC---SSSEEEEECCGGGCCC-
T ss_pred hccccCCCEEEEEcCcCCHHHHHHHHC-C---------CCeEEEEcCCHHHHHHHHHhcc---cCCceEEEcChhhccC-
Confidence 455668999999999999999988764 1 2489999999999888776542 2467788887766431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.|++... +...+ ....+|..+.++|||||+++
T Consensus 104 --------------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~ 141 (243)
T 3bkw_A 104 --------------------PQDSFDLAYSSLA------LHYVE----------------DVARLFRTVHQALSPGGHFV 141 (243)
T ss_dssp --------------------CTTCEEEEEEESC------GGGCS----------------CHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCceEEEEecc------ccccc----------------hHHHHHHHHHHhcCcCcEEE
Confidence 1267999997322 11111 12468899999999999999
Q ss_pred EEeC
Q 004775 233 YSTC 236 (731)
Q Consensus 233 YSTC 236 (731)
+++.
T Consensus 142 ~~~~ 145 (243)
T 3bkw_A 142 FSTE 145 (243)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9863
No 201
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.54 E-value=1.7e-07 Score=99.40 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=81.9
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~ 152 (731)
..+.+|||+|||.|..+..++... +.+.|+++|+|+..++.+++++..+ ..+++.+...|+..+..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~- 163 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP---------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK- 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-
T ss_pred CCCCEEEEECCCchHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh-
Confidence 456899999999999988886531 3579999999999999999987653 24678888888865311
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.....||.|++|++.. .+ +. .+....+++..+.++|+|||+||
T Consensus 164 -------------------~~~~~fD~Ii~d~~~~-~~-------------~~----~~l~~~~~l~~~~~~LkpgG~lv 206 (304)
T 2o07_A 164 -------------------QNQDAFDVIITDSSDP-MG-------------PA----ESLFKESYYQLMKTALKEDGVLC 206 (304)
T ss_dssp -------------------TCSSCEEEEEEECC-----------------------------CHHHHHHHHHEEEEEEEE
T ss_pred -------------------hCCCCceEEEECCCCC-CC-------------cc----hhhhHHHHHHHHHhccCCCeEEE
Confidence 0125799999998721 11 00 01123567888999999999999
Q ss_pred EEeCC
Q 004775 233 YSTCS 237 (731)
Q Consensus 233 YSTCS 237 (731)
..+.+
T Consensus 207 ~~~~~ 211 (304)
T 2o07_A 207 CQGEC 211 (304)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 88744
No 202
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.53 E-value=3.6e-07 Score=91.03 Aligned_cols=106 Identities=11% Similarity=0.062 Sum_probs=78.2
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..++... ..|+++|+++..+..++++. +++.+...|+..++.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~-----------~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----- 97 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF-----------GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL----- 97 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH-----------SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-----
T ss_pred CCCCeEEEecccCCHHHHHHHHhC-----------CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-----
Confidence 578899999999999999998762 37999999999998887653 457778887766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
...||.|+| +. +++...+ -.....++|.++.++|||||+++.+++
T Consensus 98 -----------------~~~~D~v~~----~~-~~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 98 -----------------GRKFSAVVS----MF-SSVGYLK-------------TTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp -----------------SSCEEEEEE----CT-TGGGGCC-------------SHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred -----------------CCCCcEEEE----cC-chHhhcC-------------CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 257999995 11 1111110 012346789999999999999999877
Q ss_pred CC
Q 004775 237 SM 238 (731)
Q Consensus 237 Sl 238 (731)
..
T Consensus 143 ~~ 144 (239)
T 3bxo_A 143 WF 144 (239)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 203
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.53 E-value=3e-07 Score=91.71 Aligned_cols=107 Identities=15% Similarity=0.064 Sum_probs=79.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||+|||+|..+..+++. ...|+++|+++..+..+++++...+. ++.+...|+..++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-----------~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------ 98 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-----------FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI------ 98 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-----------SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC------
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-----------CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc------
Confidence 7889999999999998888664 24799999999999999999887765 67788887766431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
...||.|++.. +++..-++ .....++|..+.++|||||+++.++.
T Consensus 99 ----------------~~~fD~v~~~~-----~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 99 ----------------NRKFDLITCCL-----DSTNYIID-------------SDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp ----------------SCCEEEEEECT-----TGGGGCCS-------------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ----------------cCCceEEEEcC-----ccccccCC-------------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 15799999732 01111100 12345789999999999999998654
No 204
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.52 E-value=6.6e-08 Score=101.43 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEE--ecccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA------NLIVT--NHEAQ 147 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~------ni~vt--~~Da~ 147 (731)
+++|.+|||+|||||++|..+++. +.|+|+|+++. +.. ++..... ++.+. ..|+.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~------------~~V~gVD~s~m-~~~----a~~~~~~~~~~~~~v~~~~~~~D~~ 142 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ------------PNVREVKAYTL-GTS----GHEKPRLVETFGWNLITFKSKVDVT 142 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS------------TTEEEEEEECC-CCT----TSCCCCCCCCTTGGGEEEECSCCGG
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc------------CCEEEEECchh-hhh----hhhchhhhhhcCCCeEEEeccCcHh
Confidence 578999999999999999888753 57999999872 111 1111111 56666 66766
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
.++ ...||.|+||.. ...|. +.. -+..+.++|..+.++|||
T Consensus 143 ~l~-----------------------~~~fD~Vvsd~~-~~~~~----~~~-----------d~~~~l~~L~~~~r~Lkp 183 (276)
T 2wa2_A 143 KME-----------------------PFQADTVLCDIG-ESNPT----AAV-----------EASRTLTVLNVISRWLEY 183 (276)
T ss_dssp GCC-----------------------CCCCSEEEECCC-CCCSC----HHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred hCC-----------------------CCCcCEEEECCC-cCCCc----hhh-----------hHHHHHHHHHHHHHHhcc
Confidence 543 257999999876 33331 110 011123378888899999
Q ss_pred CC--EEEEEeCC
Q 004775 228 GG--RIVYSTCS 237 (731)
Q Consensus 228 GG--~LVYSTCS 237 (731)
|| .++..+.+
T Consensus 184 GG~~~~v~~~~~ 195 (276)
T 2wa2_A 184 NQGCGFCVKVLN 195 (276)
T ss_dssp STTCEEEEEESC
T ss_pred CCCcEEEEEeCC
Confidence 99 99886544
No 205
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.51 E-value=2e-07 Score=95.93 Aligned_cols=142 Identities=14% Similarity=0.007 Sum_probs=85.2
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC------------------
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT------------------ 136 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~------------------ 136 (731)
...+|.+|||+|||+|..+..++.. ....|+|+|+|+..+..++++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~----------~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~ 121 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD----------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNS 121 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG----------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCG
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh----------hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCC
Confidence 4567899999999999866654322 135799999999999999887653210
Q ss_pred -----------CceE-EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004775 137 -----------ANLI-VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (731)
Q Consensus 137 -----------~ni~-vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~ 204 (731)
.++. +..+|......+. .....+||.|++- .++..
T Consensus 122 ~~~~~~~~~~~~~i~~~~~~D~~~~~~~~-----------------~~~~~~fD~V~~~------~~l~~---------- 168 (263)
T 2a14_A 122 GRWEEKEEKLRAAVKRVLKCDVHLGNPLA-----------------PAVLPLADCVLTL------LAMEC---------- 168 (263)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTTT-----------------TCCCCCEEEEEEE------SCHHH----------
T ss_pred cchhhHHHHHHhhhheEEeccccCCCCCC-----------------ccccCCCCEeeeh------HHHHH----------
Confidence 1232 5566655421100 0112579999971 11100
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCC------------cCcHHHHHHHHHHCCCcEEEEec
Q 004775 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP------------VENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p------------~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
...-.....++|.+..++|||||+++.++..-.. -=.++-+..+|++.| |+++.+
T Consensus 169 --i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aG--F~i~~~ 235 (263)
T 2a14_A 169 --ACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAG--FDIEQL 235 (263)
T ss_dssp --HCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT--EEEEEE
T ss_pred --hcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCC--CEEEEE
Confidence 0000123356899999999999999999742110 013555666666654 555544
No 206
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.50 E-value=1.7e-07 Score=102.15 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=89.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~ 152 (731)
+.+.++.+|||+|||+|..+..+++. + ...|+|+|++ ..+..++++++..+..+ +.+...|+..++.
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~-g---------~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 126 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA-G---------ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL- 126 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT-T---------CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC-
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc-C---------CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc-
Confidence 34567899999999999999888775 1 3589999999 99999999999988754 8888888876531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
..+||.|+++....... .. .....++....++|||||+|+
T Consensus 127 ---------------------~~~~D~Iv~~~~~~~l~----~e---------------~~~~~~l~~~~~~LkpgG~li 166 (376)
T 3r0q_C 127 ---------------------PEKVDVIISEWMGYFLL----RE---------------SMFDSVISARDRWLKPTGVMY 166 (376)
T ss_dssp ---------------------SSCEEEEEECCCBTTBT----TT---------------CTHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCcceEEEEcChhhccc----ch---------------HHHHHHHHHHHhhCCCCeEEE
Confidence 16799999966311100 00 112446777789999999999
Q ss_pred EEeCC--CCCcCcHHH
Q 004775 233 YSTCS--MNPVENEAV 246 (731)
Q Consensus 233 YSTCS--l~p~ENEaV 246 (731)
.+.++ +.|.+++..
T Consensus 167 ~~~~~~~~~~~~~~~~ 182 (376)
T 3r0q_C 167 PSHARMWLAPIKSNIA 182 (376)
T ss_dssp SSEEEEEEEEECCTHH
T ss_pred EecCeEEEEeecchHH
Confidence 87766 446565543
No 207
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.50 E-value=1.1e-07 Score=101.73 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=82.9
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~ 152 (731)
..+.+|||+|||+|+.+..++... +...|+++|+|+..++.+++++..+ ..+++.+...|+..+..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~- 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK---------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE- 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-
Confidence 356899999999999988886531 3579999999999999999987653 23578888888765311
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....+||+|++|++.. .| | . ..+ .+.+++..+.++|||||+++
T Consensus 185 -------------------~~~~~fDvIi~d~~~p-~~-----~--------~--~~l--~~~~~l~~~~~~LkpgG~lv 227 (321)
T 2pt6_A 185 -------------------NVTNTYDVIIVDSSDP-IG-----P--------A--ETL--FNQNFYEKIYNALKPNGYCV 227 (321)
T ss_dssp -------------------HCCSCEEEEEEECCCS-SS-----G--------G--GGG--SSHHHHHHHHHHEEEEEEEE
T ss_pred -------------------hcCCCceEEEECCcCC-CC-----c--------c--hhh--hHHHHHHHHHHhcCCCcEEE
Confidence 0125799999998521 11 1 0 011 12578889999999999999
Q ss_pred EEeCC
Q 004775 233 YSTCS 237 (731)
Q Consensus 233 YSTCS 237 (731)
..+.+
T Consensus 228 ~~~~~ 232 (321)
T 2pt6_A 228 AQCES 232 (321)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 97654
No 208
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.50 E-value=2.1e-07 Score=99.46 Aligned_cols=127 Identities=15% Similarity=0.069 Sum_probs=90.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~ 154 (731)
+.++.+|||+|||+|..+..+++. +.+.|+|+|++ ..+..++++++..+.. ++.+...|+..++.
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~----------g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--- 101 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH----------GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL--- 101 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT----------CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC---
T ss_pred hcCCCEEEEecCccHHHHHHHHHC----------CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC---
Confidence 457889999999999998888764 24689999999 5889999999888874 58888888776431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...+||.|+++.+..... +. .....+|..+.++|||||+++.+
T Consensus 102 ------------------~~~~~D~Ivs~~~~~~l~----~~---------------~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 102 ------------------PFPKVDIIISEWMGYFLL----YE---------------SMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp ------------------SSSCEEEEEECCCBTTBS----TT---------------CCHHHHHHHHHHHEEEEEEEESC
T ss_pred ------------------CCCcccEEEEeCchhhcc----cH---------------HHHHHHHHHHHhhcCCCeEEEEe
Confidence 125799999986532210 00 01134677778999999999977
Q ss_pred eCCC--CCcCcHHHHHHHHHH
Q 004775 235 TCSM--NPVENEAVVAEILRK 253 (731)
Q Consensus 235 TCSl--~p~ENEaVV~~~L~~ 253 (731)
++++ .+.+........+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ 165 (328)
T 1g6q_1 145 KCSIHLAGLEDSQYKDEKLNY 165 (328)
T ss_dssp EEEEEEEEECCHHHHHHHHHH
T ss_pred eceEEEEEecCchhhhhhhcc
Confidence 6664 355665554444443
No 209
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=98.49 E-value=2.1e-06 Score=92.19 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=84.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~ 152 (731)
+++.++.+|||+|||+|..+..+++.. |...++++|+ +..+..+++++...+.. ++.+..+|+.. + +
T Consensus 178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~ 245 (374)
T 1qzz_A 178 YDWSAVRHVLDVGGGNGGMLAAIALRA---------PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P-L 245 (374)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-C
T ss_pred CCCCCCCEEEEECCCcCHHHHHHHHHC---------CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c-C
Confidence 456789999999999999999998874 3568999999 99999999999888875 78888887653 1 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|++... +..|.. ....++|+++.++|||||+|+
T Consensus 246 ---------------------~~~~D~v~~~~v-------------l~~~~~-------~~~~~~l~~~~~~L~pgG~l~ 284 (374)
T 1qzz_A 246 ---------------------PVTADVVLLSFV-------------LLNWSD-------EDALTILRGCVRALEPGGRLL 284 (374)
T ss_dssp ---------------------SCCEEEEEEESC-------------GGGSCH-------HHHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCCCCEEEEecc-------------ccCCCH-------HHHHHHHHHHHHhcCCCcEEE
Confidence 123999997321 112211 123578999999999999999
Q ss_pred EEeC
Q 004775 233 YSTC 236 (731)
Q Consensus 233 YSTC 236 (731)
....
T Consensus 285 i~e~ 288 (374)
T 1qzz_A 285 VLDR 288 (374)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8766
No 210
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.48 E-value=3.9e-07 Score=91.76 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=86.2
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
..+.++.+|||+|||+|..+..++... ..|+++|+|+..+..+++++ ...++.+...|+..++...
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~-----------~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~ 117 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFF-----------PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAA 117 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHS-----------SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhC-----------CCEEEEECCHHHHHHHHHhC---cccCceEEECccccccccc
Confidence 346789999999999999999998762 37999999999998887754 4457888888877643110
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.......||.|++..... ..+ . ....++|.++.++|||||+|+.
T Consensus 118 ----------------~~~~~~~~d~v~~~~~~~------~~~-------~-------~~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 118 ----------------QIHSEIGDANIYMRTGFH------HIP-------V-------EKRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp ----------------HHHHHHCSCEEEEESSST------TSC-------G-------GGHHHHHHHHHHHHTTTCEEEE
T ss_pred ----------------ccccccCccEEEEcchhh------cCC-------H-------HHHHHHHHHHHHHcCCCCEEEE
Confidence 000012489999854211 100 0 1235689999999999999888
Q ss_pred EeCCCCCcCcHHHHHHHHHH
Q 004775 234 STCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~ 253 (731)
+..+. .+...+..+...
T Consensus 162 ~~~~~---~~~~~~~~~~~~ 178 (245)
T 3ggd_A 162 IELGT---GCIDFFNSLLEK 178 (245)
T ss_dssp EEECT---THHHHHHHHHHH
T ss_pred EeCCc---cccHHHHHHHhC
Confidence 87654 234444444443
No 211
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.48 E-value=8.9e-07 Score=92.33 Aligned_cols=131 Identities=16% Similarity=0.105 Sum_probs=77.8
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHH-----HHcCCC-----ceEEEec
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQT-----KRMCTA-----NLIVTNH 144 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~-----kRlg~~-----ni~vt~~ 144 (731)
..++.+|||+|||+|..+..++.. + .+.|+|+|+ ++..+..+++|+ +..+.. ++.+...
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~---------~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~ 146 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-G---------ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY 146 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-T---------CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred hcCCCeEEEecccccHHHHHHHHc-C---------CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence 457889999999999998877653 1 358999999 899999999999 444442 5555544
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~-D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (731)
+....... + . .......||+|++ |+..- ......++..+.+
T Consensus 147 ~~~~~~~~-~------------~--~~~~~~~fD~Ii~~dvl~~-----------------------~~~~~~ll~~l~~ 188 (281)
T 3bzb_A 147 RWGDSPDS-L------------Q--RCTGLQRFQVVLLADLLSF-----------------------HQAHDALLRSVKM 188 (281)
T ss_dssp CTTSCTHH-H------------H--HHHSCSSBSEEEEESCCSC-----------------------GGGHHHHHHHHHH
T ss_pred cCCCccHH-H------------H--hhccCCCCCEEEEeCcccC-----------------------hHHHHHHHHHHHH
Confidence 43221000 0 0 0001367999987 65421 0113457788888
Q ss_pred hcc---C--CCEEEEEeCCCCCc---CcHHHHHHHHHHCC
Q 004775 224 LLK---V--GGRIVYSTCSMNPV---ENEAVVAEILRKCE 255 (731)
Q Consensus 224 lLK---p--GG~LVYSTCSl~p~---ENEaVV~~~L~~~~ 255 (731)
+|+ | ||+++.+.+...+. ..+..+ ..+++.|
T Consensus 189 ~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~-~~l~~~G 227 (281)
T 3bzb_A 189 LLALPANDPTAVALVTFTHHRPHLAERDLAFF-RLVNADG 227 (281)
T ss_dssp HBCCTTTCTTCEEEEEECC--------CTHHH-HHHHHST
T ss_pred HhcccCCCCCCEEEEEEEeeecccchhHHHHH-HHHHhcC
Confidence 999 9 99876654444332 223333 3555554
No 212
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.47 E-value=2.1e-07 Score=98.48 Aligned_cols=133 Identities=14% Similarity=0.055 Sum_probs=90.3
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~fp~~ 152 (731)
.++.+|||+|||.|+.+..++... +.+.|+++|+|+..++.+++++..+ ..+++.+...|+..++..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG---------TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh
Confidence 567899999999999988887541 2469999999999999999887432 346788888888764310
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....+||+|++|.+.. .+ +. .+-.+.+++..+.++|||||+|+
T Consensus 165 -------------------~~~~~fDvIi~d~~~~-~~-------------~~----~~l~~~~~l~~~~~~LkpgG~lv 207 (304)
T 3bwc_A 165 -------------------TPDNTYDVVIIDTTDP-AG-------------PA----SKLFGEAFYKDVLRILKPDGICC 207 (304)
T ss_dssp -------------------SCTTCEEEEEEECC---------------------------CCHHHHHHHHHHEEEEEEEE
T ss_pred -------------------ccCCceeEEEECCCCc-cc-------------cc----hhhhHHHHHHHHHHhcCCCcEEE
Confidence 0136799999998631 00 00 00113567889999999999999
Q ss_pred EEeCCC-CCcCcHHHHHHHHHHCC
Q 004775 233 YSTCSM-NPVENEAVVAEILRKCE 255 (731)
Q Consensus 233 YSTCSl-~p~ENEaVV~~~L~~~~ 255 (731)
..+.+. ...+....+.+.|++.|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~G 231 (304)
T 3bwc_A 208 NQGESIWLDLELIEKMSRFIRETG 231 (304)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHT
T ss_pred EecCCcccchHHHHHHHHHHHhCC
Confidence 875442 22233344555666654
No 213
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.47 E-value=3.1e-07 Score=92.98 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=89.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-------------------
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT------------------- 136 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~------------------- 136 (731)
..++.+|||+|||+|..+..++.. ....|+++|+++..+..+++++...+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACE----------SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRM 123 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGG----------TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCS
T ss_pred ccCCCEEEEECCCccHHHHHHhhc----------ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccccccc
Confidence 357889999999999987776543 124899999999999999887654321
Q ss_pred ----------Cce-EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004775 137 ----------ANL-IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (731)
Q Consensus 137 ----------~ni-~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~ 205 (731)
.++ .+...|+...+... ......||.|++-- ++. .
T Consensus 124 ~~~~~~~~l~~~v~~~~~~d~~~~~~~~-----------------~~~~~~fD~v~~~~------~l~-------~---- 169 (265)
T 2i62_A 124 KGPEKEEKLRRAIKQVLKCDVTQSQPLG-----------------GVSLPPADCLLSTL------CLD-------A---- 169 (265)
T ss_dssp CHHHHHHHHHHHEEEEEECCTTSSSTTT-----------------TCCCCCEEEEEEES------CHH-------H----
T ss_pred chHHHHHHhhhhheeEEEeeeccCCCCC-----------------ccccCCccEEEEhh------hhh-------h----
Confidence 025 67777776542110 01126799999721 110 0
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEEeCCC------------CCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM------------NPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl------------~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
...-......+|.++.++|||||+|+.++..- ...-+++.+..+|++.| |+++.+
T Consensus 170 -~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG--f~~~~~ 236 (265)
T 2i62_A 170 -ACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAG--YTIEQF 236 (265)
T ss_dssp -HCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT--CEEEEE
T ss_pred -hcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCC--CEEEEE
Confidence 00011245678999999999999999886321 01124556667777665 444443
No 214
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.47 E-value=1.9e-07 Score=100.55 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=84.7
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--C--CCceEEEecccccCCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--C--TANLIVTNHEAQHFPG 151 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl--g--~~ni~vt~~Da~~fp~ 151 (731)
...+.+|||+|||.|..+..++... +...|+++|+|+..++.+++++.++ + .+++.+...|+..+..
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~---------~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~ 188 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHA---------SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK 188 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH
Confidence 3456899999999999988886532 3479999999999999999988764 3 3578899998876411
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
......||.|++|++-. .+ +.. +-...+++..+.++|+|||+|
T Consensus 189 -------------------~~~~~~fDlIi~d~~~p-~~-------------~~~----~l~~~~~l~~~~~~LkpgG~l 231 (334)
T 1xj5_A 189 -------------------NAAEGSYDAVIVDSSDP-IG-------------PAK----ELFEKPFFQSVARALRPGGVV 231 (334)
T ss_dssp -------------------TSCTTCEEEEEECCCCT-TS-------------GGG----GGGSHHHHHHHHHHEEEEEEE
T ss_pred -------------------hccCCCccEEEECCCCc-cC-------------cch----hhhHHHHHHHHHHhcCCCcEE
Confidence 00125799999998610 01 000 111357889999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+..+.+.
T Consensus 232 v~~~~~~ 238 (334)
T 1xj5_A 232 CTQAESL 238 (334)
T ss_dssp EEECCCT
T ss_pred EEecCCc
Confidence 9975543
No 215
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.46 E-value=3.6e-07 Score=99.36 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=96.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEecccccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--------ANLIVTNHEAQHF 149 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~--------~ni~vt~~Da~~f 149 (731)
.+.+|||+|+|.|+.+..++.. +...|+++|+|+..++++++++..++. +++.++..|+..|
T Consensus 188 ~pkrVL~IGgG~G~~arellk~----------~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~ 257 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKL----------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV 257 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT----------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH
Confidence 4679999999999987776543 236899999999999999988654321 2688999998875
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
..- ......+||+|++|+|-...|. .| .. .--......++..+.++|+|||
T Consensus 258 L~~-----------------~~~~~~~fDvII~D~~d~P~~~---~p--------~~-L~t~eFy~~~~~~~~~~L~pgG 308 (364)
T 2qfm_A 258 LKR-----------------YAKEGREFDYVINDLTAVPIST---SP--------EE-DSTWEFLRLILDLSMKVLKQDG 308 (364)
T ss_dssp HHH-----------------HHHHTCCEEEEEEECCSSCCCC---C-------------CHHHHHHHHHHHHHHTEEEEE
T ss_pred HHh-----------------hhccCCCceEEEECCCCcccCc---Cc--------hh-hhHHHHHHHHHHHHHhhCCCCc
Confidence 310 0001367999999997311121 11 11 1113445567777899999999
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHCCCcEEE
Q 004775 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVEL 260 (731)
Q Consensus 230 ~LVYSTCSl~p~ENEaVV~~~L~~~~g~~el 260 (731)
.|+.-+||.+..|--......|++.-..+..
T Consensus 309 ilv~qs~s~~~~e~~~~~~~~l~~~F~~v~~ 339 (364)
T 2qfm_A 309 KYFTQGNCVNLTEALSLYEEQLGRLYCPVEF 339 (364)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHTTSSSCEEE
T ss_pred EEEEEcCCcchHHHHHHHHHHHHHhCCceEE
Confidence 9999999988744445555556554444544
No 216
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.45 E-value=8.5e-07 Score=93.20 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=82.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-------CCCceEEEecccccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-------CTANLIVTNHEAQHF 149 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-------g~~ni~vt~~Da~~f 149 (731)
.++.+|||+|||+|..+..+++. +...|+++|+++..+..++++.... +..++.+...|+..+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 102 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG----------RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE 102 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccccc
Confidence 47889999999999999888763 2468999999999999999888765 345788888888765
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
+... +.......||.|+|.. ++ .|... -......+|..+.++|||||
T Consensus 103 ~~~~---------------~~~~~~~~fD~V~~~~------~l--------~~~~~----~~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 103 LLID---------------KFRDPQMCFDICSCQF------VC--------HYSFE----SYEQADMMLRNACERLSPGG 149 (313)
T ss_dssp CSTT---------------TCSSTTCCEEEEEEET------CG--------GGGGG----SHHHHHHHHHHHHTTEEEEE
T ss_pred chhh---------------hcccCCCCEEEEEEec------ch--------hhccC----CHHHHHHHHHHHHHHhCCCc
Confidence 4100 0001124799999732 11 11100 01234578999999999999
Q ss_pred EEEEEeCCC
Q 004775 230 RIVYSTCSM 238 (731)
Q Consensus 230 ~LVYSTCSl 238 (731)
+++.+|...
T Consensus 150 ~li~~~~~~ 158 (313)
T 3bgv_A 150 YFIGTTPNS 158 (313)
T ss_dssp EEEEEEECH
T ss_pred EEEEecCCh
Confidence 999987653
No 217
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.44 E-value=3.3e-07 Score=97.51 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEecccccCCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----CTANLIVTNHEAQHFPG 151 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----g~~ni~vt~~Da~~fp~ 151 (731)
..+.+|||+|||.|+.+..++... +...|+++|+|+..++.+++++..+ ..+++.+...|+..+..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 146 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP---------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE 146 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH
Confidence 345799999999999988886542 2469999999999999999987652 24678999998876411
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
....+||+|++|++... + + ..| ...+ ...+++..+.++|||||++
T Consensus 147 --------------------~~~~~fD~Ii~d~~~~~-~-~-~~~----------~~~l--~~~~~l~~~~~~LkpgG~l 191 (314)
T 1uir_A 147 --------------------RTEERYDVVIIDLTDPV-G-E-DNP----------ARLL--YTVEFYRLVKAHLNPGGVM 191 (314)
T ss_dssp --------------------HCCCCEEEEEEECCCCB-S-T-TCG----------GGGG--SSHHHHHHHHHTEEEEEEE
T ss_pred --------------------hcCCCccEEEECCCCcc-c-c-cCc----------chhc--cHHHHHHHHHHhcCCCcEE
Confidence 11257999999986321 0 0 000 0011 1356788999999999999
Q ss_pred EEEeCC
Q 004775 232 VYSTCS 237 (731)
Q Consensus 232 VYSTCS 237 (731)
+..+.+
T Consensus 192 v~~~~~ 197 (314)
T 1uir_A 192 GMQTGM 197 (314)
T ss_dssp EEEEEE
T ss_pred EEEccC
Confidence 987654
No 218
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.44 E-value=3.4e-07 Score=103.21 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=89.0
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~ 153 (731)
...++.+|||+|||+|..+..+++. +...|+|+|+++ .+..+++++++++. .++.+...|+..++.
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~----------~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-- 221 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQA----------GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-- 221 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHT----------TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--
T ss_pred hhcCCCEEEEecCcccHHHHHHHHc----------CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc--
Confidence 4467899999999999988887763 246999999998 88999999999887 579999988766421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
..+||+|+++++ +. . |. ......++..+.++|||||+|+.
T Consensus 222 --------------------~~~fD~Ivs~~~----~~------~---~~-------~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 222 --------------------PEQVDIIISEPM----GY------M---LF-------NERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp --------------------SSCEEEEECCCC----HH------H---HT-------CHHHHHHHHHGGGGEEEEEEEES
T ss_pred --------------------CCCeEEEEEeCc----hH------h---cC-------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 147999998665 10 0 10 11234566788899999999997
Q ss_pred EeCCC--CCcCcHHHHHH
Q 004775 234 STCSM--NPVENEAVVAE 249 (731)
Q Consensus 234 STCSl--~p~ENEaVV~~ 249 (731)
+.+++ .|++.+....+
T Consensus 262 ~~~~~~~~pi~~~~l~~e 279 (480)
T 3b3j_A 262 TIGDVHLAPFTDEQLYME 279 (480)
T ss_dssp CEEEEEEEEECCHHHHHH
T ss_pred EeceeeeeccCchHHHHH
Confidence 65553 45666655433
No 219
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.44 E-value=3.4e-07 Score=95.38 Aligned_cols=120 Identities=10% Similarity=0.053 Sum_probs=77.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEE--EEEeCCHHHHHHHHHHHHHc-CCCceEEE--ecccccCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMV--IANDLDVQRCNLLIHQTKRM-CTANLIVT--NHEAQHFP 150 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~V--vAnDid~~R~~~L~~n~kRl-g~~ni~vt--~~Da~~fp 150 (731)
+.++.+|||+|||+|..|..++..+... .+...| +|+|.|+.++..+++++... +..++.+. ..++..++
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~-----~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~ 124 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQ-----YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQ 124 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHH-----STTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhh-----CCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhh
Confidence 4678899999999999888777655421 124544 99999999999999887654 45565543 33332211
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
... .......+||.|++-. ++..-+ ...+.|++..++|||||+
T Consensus 125 ~~~---------------~~~~~~~~fD~V~~~~------~l~~~~----------------d~~~~l~~~~r~LkpgG~ 167 (292)
T 2aot_A 125 SRM---------------LEKKELQKWDFIHMIQ------MLYYVK----------------DIPATLKFFHSLLGTNAK 167 (292)
T ss_dssp HHH---------------HTTTCCCCEEEEEEES------CGGGCS----------------CHHHHHHHHHHTEEEEEE
T ss_pred hhh---------------ccccCCCceeEEEEee------eeeecC----------------CHHHHHHHHHHHcCCCcE
Confidence 000 0001236799999721 111111 124578999999999999
Q ss_pred EEEEeCC
Q 004775 231 IVYSTCS 237 (731)
Q Consensus 231 LVYSTCS 237 (731)
++.++.+
T Consensus 168 l~i~~~~ 174 (292)
T 2aot_A 168 MLIIVVS 174 (292)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9988544
No 220
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=98.42 E-value=2.8e-06 Score=89.54 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=84.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~ 155 (731)
.++.+|||+|||+|..+..+++.. |...++++|++ ..+..+++++...+.. ++.+..+|....+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN---------PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---- 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC---------TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC----
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC---------CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC----
Confidence 788999999999999999998874 35799999999 9999999999888875 58888888765321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...||.|++--. ...|. .....++|+++.++|||||+++...
T Consensus 230 ------------------~~~~D~v~~~~~-------------l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 230 ------------------GNDYDLVLLPNF-------------LHHFD-------VATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp ------------------CSCEEEEEEESC-------------GGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEcch-------------hccCC-------HHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 134999997211 11121 1234678999999999999998876
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
....
T Consensus 272 ~~~~ 275 (335)
T 2r3s_A 272 FIPN 275 (335)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 6554
No 221
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.42 E-value=2.2e-07 Score=96.26 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=74.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+.+|||++||+|..|..|++. ...|+|+|+|+..++.++. .+++.+...++..+|
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~-----------~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~------- 94 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF-----------FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTG------- 94 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT-----------CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCC-------
T ss_pred CCCCEEEEcCCCCHHHHHHHHh-----------CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhc-------
Confidence 4679999999999998888764 3589999999987764421 357888888887654
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
.....||.|+|- .++ .|-. ..+.+..+.++|||||+|++.+.+
T Consensus 95 --------------~~~~sfD~v~~~------~~~--------h~~~---------~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 95 --------------LPPASVDVAIAA------QAM--------HWFD---------LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp --------------CCSSCEEEEEEC------SCC--------TTCC---------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------------ccCCcccEEEEe------eeh--------hHhh---------HHHHHHHHHHHcCCCCEEEEEECC
Confidence 123689999971 111 1211 124678889999999999988877
Q ss_pred CCCc
Q 004775 238 MNPV 241 (731)
Q Consensus 238 l~p~ 241 (731)
....
T Consensus 138 ~~~~ 141 (257)
T 4hg2_A 138 LTRV 141 (257)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 6544
No 222
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.42 E-value=2.3e-07 Score=94.95 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=75.3
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
+.+.++.+|||+|||+|..+..+++. .+.|+++|+++..+..++.+. ++.+...|+..+|.
T Consensus 30 ~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~-- 90 (261)
T 3ege_A 30 LNLPKGSVIADIGAGTGGYSVALANQ-----------GLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLAL-- 90 (261)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHTT-----------TCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCS--
T ss_pred hCCCCCCEEEEEcCcccHHHHHHHhC-----------CCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCC--
Confidence 45678999999999999999988751 479999999997766443322 78888888776541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
....||.|++-.. +..- ....++|..+.++|| ||+++.
T Consensus 91 -------------------~~~~fD~v~~~~~------l~~~----------------~~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 91 -------------------PDKSVDGVISILA------IHHF----------------SHLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp -------------------CTTCBSEEEEESC------GGGC----------------SSHHHHHHHHHHHBC-SSCEEE
T ss_pred -------------------CCCCEeEEEEcch------Hhhc----------------cCHHHHHHHHHHHhC-CcEEEE
Confidence 1268999997322 1110 112468999999999 998888
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
.++.
T Consensus 129 ~~~~ 132 (261)
T 3ege_A 129 LTFD 132 (261)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8765
No 223
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.42 E-value=2.7e-07 Score=92.18 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=76.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~ 155 (731)
.+.++|||++||.|..++.++.. .|...|+|+|+|...++.+++++.++|.. ++.+ .|...
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~---------~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~------- 109 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNE---------NEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKES------- 109 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCS---------SCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHH-------
T ss_pred CCCCeEEEecCCCCHHHHHHHhc---------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccc-------
Confidence 56889999999999988877543 24569999999999999999999999987 5666 33221
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE-EE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YS 234 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV-YS 234 (731)
......||.||+- ....+-..+...+.+.++.|||||.+| +=
T Consensus 110 ---------------~~~~~~~DvVLa~----------------------k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 110 ---------------DVYKGTYDVVFLL----------------------KMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ---------------HHTTSEEEEEEEE----------------------TCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred ---------------cCCCCCcChhhHh----------------------hHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 1123679999960 111222334456778999999998776 33
Q ss_pred eCCC
Q 004775 235 TCSM 238 (731)
Q Consensus 235 TCSl 238 (731)
|-|+
T Consensus 153 tksl 156 (200)
T 3fzg_A 153 IKSL 156 (200)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 4454
No 224
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.42 E-value=4e-07 Score=97.42 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=83.1
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
.+|||+|||.|+.+..+++.. |...|+++|+|+..++.+++++.....+++.+...|+..+..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~---------p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~-------- 153 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY---------PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE-------- 153 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS---------TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH--------
T ss_pred CEEEEEECCcCHHHHHHHHHC---------CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHh--------
Confidence 499999999999999988763 346899999999999999887644345679999999876521
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.....+||+|++|++.. .+. |. .| ...+.+..+.++|+|||.||..+.+-
T Consensus 154 -----------~~~~~~fDvIi~D~~~~-~~~----~~-----------~L--~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 154 -----------SFTPASRDVIIRDVFAG-AIT----PQ-----------NF--TTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp -----------TCCTTCEEEEEECCSTT-SCC----CG-----------GG--SBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred -----------hccCCCCCEEEECCCCc-ccc----ch-----------hh--hHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 01126799999997532 121 10 01 12467888999999999999887654
No 225
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.40 E-value=3.7e-07 Score=97.46 Aligned_cols=115 Identities=15% Similarity=0.018 Sum_probs=81.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--C--CCceEEEecccccCCCc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--C--TANLIVTNHEAQHFPGC 152 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl--g--~~ni~vt~~Da~~fp~~ 152 (731)
..+.+|||+|||.|+.+..++... +.+.|+++|+|+..++.+++++..+ + .+++.+...|+..+..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~- 176 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE---------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK- 176 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT---------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH-
Confidence 345799999999999988886532 3579999999999999999887654 2 3578888888765311
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
.....||+|++|++.. .+ +. -+-...+++..+.++|+|||+|+
T Consensus 177 -------------------~~~~~fD~Ii~d~~~~-~~-------------~~----~~l~t~~~l~~~~~~LkpgG~lv 219 (314)
T 2b2c_A 177 -------------------NHKNEFDVIITDSSDP-VG-------------PA----ESLFGQSYYELLRDALKEDGILS 219 (314)
T ss_dssp -------------------HCTTCEEEEEECCC-------------------------------HHHHHHHHEEEEEEEE
T ss_pred -------------------hcCCCceEEEEcCCCC-CC-------------cc----hhhhHHHHHHHHHhhcCCCeEEE
Confidence 1125799999998621 01 10 01122578899999999999999
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
..+.+.
T Consensus 220 ~~~~~~ 225 (314)
T 2b2c_A 220 SQGESV 225 (314)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 987553
No 226
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=98.39 E-value=8.8e-06 Score=86.20 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=84.5
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~ 153 (731)
+..++.+|||++||+|..+..+++.. |...++++|+ +..+..+++++...+. .++.+..+|... +
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--- 231 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAH---------EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-P--- 231 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C---
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHC---------CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-C---
Confidence 45667899999999999999998874 3568999999 9999999999888876 578888887642 1
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
. +..||.|+|-- ++..|.. ..+.++|+++.+.|||||+|+.
T Consensus 232 ------------------~-p~~~D~v~~~~-------------vlh~~~~-------~~~~~~l~~~~~~L~pgG~l~i 272 (332)
T 3i53_A 232 ------------------L-PAGAGGYVLSA-------------VLHDWDD-------LSAVAILRRCAEAAGSGGVVLV 272 (332)
T ss_dssp ------------------C-CCSCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHHHTTTCEEEE
T ss_pred ------------------C-CCCCcEEEEeh-------------hhccCCH-------HHHHHHHHHHHHhcCCCCEEEE
Confidence 0 12699999711 1222321 2357899999999999999998
Q ss_pred EeCCCC
Q 004775 234 STCSMN 239 (731)
Q Consensus 234 STCSl~ 239 (731)
....+.
T Consensus 273 ~e~~~~ 278 (332)
T 3i53_A 273 IEAVAG 278 (332)
T ss_dssp EECCCC
T ss_pred EeecCC
Confidence 766543
No 227
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.36 E-value=3.7e-07 Score=100.90 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=67.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEecccccCCCccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--CTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl--g~~ni~vt~~Da~~fp~~~~ 154 (731)
.+|.+|||+|||+|..+..++.. .+.|+|+|+|+.++.++++|++++ |..++.+.+.|+..+...
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-----------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-- 158 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-----------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-- 158 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH--
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh--
Confidence 35899999999999999887653 368999999999999999999998 888899999998764110
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
.....||.|++|||-.+.
T Consensus 159 -----------------~~~~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 159 -----------------IKTFHPDYIYVDPARRSG 176 (410)
T ss_dssp -----------------HHHHCCSEEEECCEEC--
T ss_pred -----------------ccCCCceEEEECCCCcCC
Confidence 012479999999997663
No 228
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=98.35 E-value=6.7e-06 Score=87.89 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=84.4
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~ 151 (731)
.+++.++.+|||+|||+|..+..+++.. +...++++|+ +..+..+++++...+.. ++.+..+|....
T Consensus 178 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 245 (360)
T 1tw3_A 178 AYDWTNVRHVLDVGGGKGGFAAAIARRA---------PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-- 245 (360)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--
T ss_pred hCCCccCcEEEEeCCcCcHHHHHHHHhC---------CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC--
Confidence 3466789999999999999999998863 3468999999 99999999999888775 788888876431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
+ ...||.|++.-. ...|.. ....++|+++.++|||||+|
T Consensus 246 ~---------------------~~~~D~v~~~~v-------------l~~~~~-------~~~~~~l~~~~~~L~pgG~l 284 (360)
T 1tw3_A 246 L---------------------PRKADAIILSFV-------------LLNWPD-------HDAVRILTRCAEALEPGGRI 284 (360)
T ss_dssp C---------------------SSCEEEEEEESC-------------GGGSCH-------HHHHHHHHHHHHTEEEEEEE
T ss_pred C---------------------CCCccEEEEccc-------------ccCCCH-------HHHHHHHHHHHHhcCCCcEE
Confidence 0 124999997321 112211 12357899999999999999
Q ss_pred EEEeCC
Q 004775 232 VYSTCS 237 (731)
Q Consensus 232 VYSTCS 237 (731)
+.+...
T Consensus 285 ~i~e~~ 290 (360)
T 1tw3_A 285 LIHERD 290 (360)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 988665
No 229
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.34 E-value=8.4e-07 Score=87.11 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=73.5
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||+|||+|..+..+ + ...|+++|+++..+..++++. .++.+...|+..+|.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~--------~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~------ 91 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----P--------YPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF------ 91 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----C--------CSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS------
T ss_pred CCCeEEEECCCCCHhHHhC-----C--------CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC------
Confidence 7889999999999987765 1 238999999999998877754 567777777766431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
....||.|++... +...+ ...++|..+.++|||||+++.++..
T Consensus 92 ---------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 92 ---------------PGESFDVVLLFTT------LEFVE----------------DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp ---------------CSSCEEEEEEESC------TTTCS----------------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------------CCCcEEEEEEcCh------hhhcC----------------CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 1257999997421 11111 1246889999999999999998754
Q ss_pred C
Q 004775 238 M 238 (731)
Q Consensus 238 l 238 (731)
-
T Consensus 135 ~ 135 (211)
T 2gs9_A 135 A 135 (211)
T ss_dssp T
T ss_pred C
Confidence 3
No 230
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.33 E-value=1.6e-06 Score=89.90 Aligned_cols=141 Identities=14% Similarity=0.027 Sum_probs=84.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----------------CC---
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----------------CT--- 136 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----------------g~--- 136 (731)
.++.+|||+|||+|. +..++.... ...|+|+|+++..+..++++++.. +.
T Consensus 70 ~~~~~vLDiGcG~G~-~~~l~~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (289)
T 2g72_A 70 VSGRTLIDIGSGPTV-YQLLSACSH---------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 139 (289)
T ss_dssp SCCSEEEEETCTTCC-GGGTTGGGG---------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred CCCCeEEEECCCcCh-HHHHhhccC---------CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccc
Confidence 378899999999999 443332211 358999999999998887754321 10
Q ss_pred ----------CceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004775 137 ----------ANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (731)
Q Consensus 137 ----------~ni~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~ 205 (731)
..+.+...|+.. .|- . +.......||.|++-. ++. |-..
T Consensus 140 ~~~~~~~~~~~~~~~~~~D~~~~~~~-~---------------~~~~~~~~fD~V~~~~------~l~--------~~~~ 189 (289)
T 2g72_A 140 WQDKERQLRARVKRVLPIDVHQPQPL-G---------------AGSPAPLPADALVSAF------CLE--------AVSP 189 (289)
T ss_dssp HHHHHHHHHHHEEEEECCCTTSSSTT-C---------------SSCSSCSSEEEEEEES------CHH--------HHCS
T ss_pred hhhhHHHHHhhhceEEecccCCCCCc-c---------------ccccCCCCCCEEEehh------hhh--------hhcC
Confidence 013455556655 221 0 0011235699999721 110 0000
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEEeCCC------------CCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM------------NPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl------------~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
. .....++|.++.++|||||+|+.+...- ...-+++-+..+|++.| |+++.+
T Consensus 190 ~----~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG--f~~~~~ 253 (289)
T 2g72_A 190 D----LASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG--YKVRDL 253 (289)
T ss_dssp S----HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT--EEEEEE
T ss_pred C----HHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcC--CeEEEe
Confidence 0 1234678999999999999999874210 11125666788888876 555554
No 231
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=98.33 E-value=9.8e-06 Score=87.39 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=83.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~~~ 155 (731)
....+|||+|||+|..+..+++.. |...++++|+ +..+..++.++...+. .++.+..+|+.... .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--- 243 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN---------KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRD-V--- 243 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS---------TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSS-C---
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC---------CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccC-C---
Confidence 456899999999999999998874 3568999999 9999999888877775 47888888875521 0
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.. ...||.|++-- +...|.. ....++|+++.+.|||||+|+...
T Consensus 244 ---------------~~-p~~~D~v~~~~-------------vlh~~~~-------~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 244 ---------------PF-PTGFDAVWMSQ-------------FLDCFSE-------EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp ---------------CC-CCCCSEEEEES-------------CSTTSCH-------HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ---------------CC-CCCcCEEEEec-------------hhhhCCH-------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 00 15799998721 1112221 223578999999999999999876
Q ss_pred CCCCC
Q 004775 236 CSMNP 240 (731)
Q Consensus 236 CSl~p 240 (731)
..+..
T Consensus 288 ~~~~~ 292 (363)
T 3dp7_A 288 TLWDR 292 (363)
T ss_dssp CCTTS
T ss_pred eccCC
Confidence 65544
No 232
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=98.32 E-value=2.9e-06 Score=96.78 Aligned_cols=175 Identities=15% Similarity=0.104 Sum_probs=111.8
Q ss_pred ccCcEEecCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCC----CCCCeEEEEEeCCHHHHHHHHHHH
Q 004775 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG----ALPNGMVIANDLDVQRCNLLIHQT 131 (731)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~----~~p~G~VvAnDid~~R~~~L~~n~ 131 (731)
+.|.++--..++-+.+.++++++|++|+|-|||+|++.+++++.+....... ......++++|+++..+.+++-|+
T Consensus 195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 5677766666666777889999999999999999999999988876421100 001246999999999999988888
Q ss_pred HHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004775 132 KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (731)
Q Consensus 132 kRlg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (731)
--.|.....+...|...+|... .....+||+||++||-++... .+.+.++... ....
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~-----------------~~~~~~fD~Il~NPPf~~~~~----~~~~~~~~~~--~~~~ 331 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLRE-----------------MGDKDRVDVILTNPPFGGEEE----KGILGNFPED--MQTA 331 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGG-----------------CCGGGCBSEEEECCCSSCBCC----HHHHTTSCGG--GCCC
T ss_pred HhcCCccccccccccccCchhh-----------------hcccccceEEEecCCCCcccc----ccccccCchh--cccc
Confidence 7777655455666655443211 112357999999999976431 2222221111 1112
Q ss_pred HHHHHHHHHHHhhcc-------CCCEEEEEeC--CCCCcCcHHHHHHHHHH
Q 004775 212 SLQVQIAMRGISLLK-------VGGRIVYSTC--SMNPVENEAVVAEILRK 253 (731)
Q Consensus 212 ~lQ~~IL~rAl~lLK-------pGG~LVYSTC--Sl~p~ENEaVV~~~L~~ 253 (731)
..+...+.+++++|| +||++++.+- .+...-.+.-+.+.|-+
T Consensus 332 ~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle 382 (530)
T 3ufb_A 332 ETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLK 382 (530)
T ss_dssp BHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhh
Confidence 334555667777776 7999887754 24333345556655544
No 233
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.30 E-value=9.2e-07 Score=90.31 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=73.7
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
++.+|||+|||+|..+..+++. ...|+++|+|+..+..++.+.. .+ +...|+..++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~------- 109 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-----------GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLP------- 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-----------TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCC-------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-----------CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCC-------
Confidence 7889999999999999888764 3589999999999988876543 22 5566665543
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
.....||.|++... + ..|.. ...++|..+.++|||||+++.++.+
T Consensus 110 --------------~~~~~fD~v~~~~~------~-------~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 110 --------------FPSGAFEAVLALGD------V-------LSYVE--------NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp --------------SCTTCEEEEEECSS------H-------HHHCS--------CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --------------CCCCCEEEEEEcch------h-------hhccc--------cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 11267999997321 0 01111 1456889999999999999998765
Q ss_pred C
Q 004775 238 M 238 (731)
Q Consensus 238 l 238 (731)
.
T Consensus 155 ~ 155 (260)
T 2avn_A 155 F 155 (260)
T ss_dssp H
T ss_pred h
Confidence 3
No 234
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.30 E-value=7.8e-07 Score=104.82 Aligned_cols=192 Identities=13% Similarity=0.017 Sum_probs=107.8
Q ss_pred HHHHHhhcc-cccCcEEecCccccchhhh----cC--CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEe
Q 004775 46 RFHKFLKLE-NEIGNITRQEAVSMVPPLF----LD--VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (731)
Q Consensus 46 ~~~~~l~~~-~~~G~i~~Qd~~Smlp~ll----Ld--~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (731)
.++.|.... ...|.++--...+.+.+.+ +. ..++.+|||.|||+|+..+.++..+... ....++|+|
T Consensus 282 ll~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei------~~~~IyGvE 355 (878)
T 3s1s_A 282 LIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNV------MPRQIWAND 355 (878)
T ss_dssp HHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTC------CGGGEEEEC
T ss_pred HHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhccc------CCCeEEEEE
Confidence 344554322 3456555443333333333 22 3468999999999999999888765321 135799999
Q ss_pred CCHHHHHHH--HHHHHH----cCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 119 LDVQRCNLL--IHQTKR----MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 119 id~~R~~~L--~~n~kR----lg~~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
+++..+.++ +.++.. .+..+..+...|..... .....+||.|+++||.++....
T Consensus 356 IDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~--------------------~~~~~kFDVVIgNPPYg~~~~~ 415 (878)
T 3s1s_A 356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN--------------------PEDFANVSVVVMNPPYVSGVTD 415 (878)
T ss_dssp SCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC--------------------GGGGTTEEEEEECCBCCSSCCC
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc--------------------ccccCCCCEEEECCCccccccc
Confidence 999999888 444332 12223233333322210 1123679999999999764432
Q ss_pred ccC-hhhhhhcc------cccccchHHHHHHHHHHHHhhccCCCEEEEEeCC-CC--CcCcHHHHHHHHHHCCCcEEEEe
Q 004775 193 RKA-PDIWRKWN------VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MN--PVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 193 rk~-pd~~~~w~------~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS-l~--p~ENEaVV~~~L~~~~g~~elvd 262 (731)
... .+...++. +....+...+...++.+++++|++||++++.+=. +. ......-+.+.|-+...-..+++
T Consensus 416 ~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~~I~aIId 495 (878)
T 3s1s_A 416 PAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNFGLEHIFL 495 (878)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTTCEEEEEE
T ss_pred hhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCCCeEEEEE
Confidence 211 11111110 1111222346677899999999999999987544 22 12224556666654433344555
Q ss_pred c
Q 004775 263 V 263 (731)
Q Consensus 263 ~ 263 (731)
+
T Consensus 496 L 496 (878)
T 3s1s_A 496 Y 496 (878)
T ss_dssp C
T ss_pred C
Confidence 4
No 235
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.29 E-value=6.2e-06 Score=85.63 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=88.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHh------hcCCCCCCCCCeEEEEEeCCH---HHHH-----------HHHHHHHH--
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEII------HQSTNPGALPNGMVIANDLDV---QRCN-----------LLIHQTKR-- 133 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l------~~~~~~~~~p~G~VvAnDid~---~R~~-----------~L~~n~kR-- 133 (731)
.+++.+||++|.|.|.-++.+++.. ... +......++++|.++ ..+. .+...++.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~---~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~ 134 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQ---AQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWP 134 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTT---SSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCC---CCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcc
Confidence 3567899999999999998887765 210 000136899999987 3333 23333333
Q ss_pred ----------c--CCCceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh
Q 004775 134 ----------M--CTANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR 200 (731)
Q Consensus 134 ----------l--g~~ni~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~ 200 (731)
+ +..++.+..+|+.. ++.+. ......||+|++|+- .-.++|++|.
T Consensus 135 ~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~-----------------~~~~~~~D~iflD~f-----sp~~~p~lw~ 192 (257)
T 2qy6_A 135 MPLPGCHRLLLDEGRVTLDLWFGDINELISQLD-----------------DSLNQKVDAWFLDGF-----APAKNPDMWT 192 (257)
T ss_dssp CSCSEEEEEEEC--CEEEEEEESCHHHHGGGSC-----------------GGGTTCEEEEEECSS-----CTTTCGGGCC
T ss_pred ccccchhheeccCCceEEEEEECcHHHHHhhcc-----------------cccCCeEEEEEECCC-----CcccChhhcC
Confidence 1 12356777888876 22210 000137999999971 1245787765
Q ss_pred hcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEe
Q 004775 201 KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (731)
Q Consensus 201 ~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd 262 (731)
. .++....++|+|||+|+.-||+ .+|...|...| |++..
T Consensus 193 ~--------------~~l~~l~~~L~pGG~l~tysaa-------~~vrr~L~~aG--F~v~~ 231 (257)
T 2qy6_A 193 Q--------------NLFNAMARLARPGGTLATFTSA-------GFVRRGLQEAG--FTMQK 231 (257)
T ss_dssp H--------------HHHHHHHHHEEEEEEEEESCCB-------HHHHHHHHHHT--EEEEE
T ss_pred H--------------HHHHHHHHHcCCCcEEEEEeCC-------HHHHHHHHHCC--CEEEe
Confidence 3 5788899999999999843332 47888888866 55443
No 236
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=98.29 E-value=7e-06 Score=88.02 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=85.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~ 152 (731)
++..++.+|||+|||+|..+..+++.. |...++++|+ +..+..+++++++.+..+ +.+..+|+...+.
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 254 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY- 254 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHC---------TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHC---------CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-
Confidence 456788999999999999999998873 3578999999 999999999998888754 8888888765321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
..+|.|++.- ++..|.. ....++|+++.+.|||||+|+
T Consensus 255 ----------------------~~~D~v~~~~-------------vlh~~~d-------~~~~~~l~~~~~~L~pgG~l~ 292 (359)
T 1x19_A 255 ----------------------PEADAVLFCR-------------ILYSANE-------QLSTIMCKKAFDAMRSGGRLL 292 (359)
T ss_dssp ----------------------CCCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHTTCCTTCEEE
T ss_pred ----------------------CCCCEEEEec-------------hhccCCH-------HHHHHHHHHHHHhcCCCCEEE
Confidence 2349998721 1122221 234678999999999999998
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
......
T Consensus 293 i~e~~~ 298 (359)
T 1x19_A 293 ILDMVI 298 (359)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 776554
No 237
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.28 E-value=4.3e-06 Score=82.23 Aligned_cols=102 Identities=16% Similarity=0.048 Sum_probs=71.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+++. ...|+++|+++..+..+.++. ..+...|+..+..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-----------~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~----- 87 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-----------GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDM----- 87 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-----------TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCC-----
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCC-----
Confidence 67899999999999999888664 268999999999887766542 1455566554210
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
......||.|++.. ++...++ ...+|..+.++|||||+++.++-
T Consensus 88 --------------~~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 88 --------------PYEEEQFDCVIFGD------VLEHLFD----------------PWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp --------------CSCTTCEEEEEEES------CGGGSSC----------------HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred --------------CCCCCccCEEEECC------hhhhcCC----------------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 11236799999732 2211111 13688999999999999999864
Q ss_pred C
Q 004775 237 S 237 (731)
Q Consensus 237 S 237 (731)
.
T Consensus 132 ~ 132 (230)
T 3cc8_A 132 N 132 (230)
T ss_dssp C
T ss_pred C
Confidence 3
No 238
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.28 E-value=9.5e-07 Score=90.29 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=73.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.++.+|||+|||+|..+..+++.+. .+.|+++|+++.++..+.++. +++.+...|+..++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~---------~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----- 144 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP---------EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF----- 144 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT---------TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC-----
Confidence 6789999999999999999988642 468999999999998876643 456777777665431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
....||.|++-.. + ..+..+.++|||||+++.++.
T Consensus 145 ----------------~~~~fD~v~~~~~------------------~-----------~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 145 ----------------SDTSMDAIIRIYA------------------P-----------CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp ----------------CTTCEEEEEEESC------------------C-----------CCHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------CCCceeEEEEeCC------------------h-----------hhHHHHHHhcCCCcEEEEEEc
Confidence 1257999996211 0 126778889999999999875
Q ss_pred CC
Q 004775 237 SM 238 (731)
Q Consensus 237 Sl 238 (731)
..
T Consensus 180 ~~ 181 (269)
T 1p91_A 180 GP 181 (269)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 239
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.27 E-value=6e-06 Score=90.45 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=71.3
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCC------------------------------CCCCeEEEEEeCCHH
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG------------------------------ALPNGMVIANDLDVQ 122 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~------------------------------~~p~G~VvAnDid~~ 122 (731)
++...++..|||.|||+|..++.+|.+..+.. ++ ..+...|+|+|+|+.
T Consensus 190 ~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~a-pg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ 268 (385)
T 3ldu_A 190 LTPWKAGRVLVDPMCGSGTILIEAAMIGINMA-PGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE 268 (385)
T ss_dssp TSCCCTTSCEEETTCTTCHHHHHHHHHHTTCC-TTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH
T ss_pred hhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhC-CCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH
Confidence 34667899999999999999999887643210 00 012357999999999
Q ss_pred HHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 123 RCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 123 R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
.+..++.|+.+.|.. ++.+.+.|+..++. ...||.|++|||.
T Consensus 269 ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~----------------------~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 269 SIDIARENAEIAGVDEYIEFNVGDATQFKS----------------------EDEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEECCGGGCCC----------------------SCBSCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCceEEEECChhhcCc----------------------CCCCcEEEECCCC
Confidence 999999999999986 68899998877531 1479999999994
No 240
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=98.26 E-value=2.6e-05 Score=84.27 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=86.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~ 152 (731)
++..++.+|||++||+|..+..+++.. |...++++|+ +..+..++.++...+. .++.+..+|... +
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~-- 264 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAF---------PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-T-- 264 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-C--
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHC---------CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-C--
Confidence 456788999999999999999998873 3568999999 9999999999888875 578888887652 1
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. ...||.|++-- ++..|.. ....++|+++.+.|||||+|+
T Consensus 265 -------------------~-p~~~D~v~~~~-------------vlh~~~d-------~~~~~~L~~~~~~L~pgG~l~ 304 (369)
T 3gwz_A 265 -------------------I-PDGADVYLIKH-------------VLHDWDD-------DDVVRILRRIATAMKPDSRLL 304 (369)
T ss_dssp -------------------C-CSSCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHTTCCTTCEEE
T ss_pred -------------------C-CCCceEEEhhh-------------hhccCCH-------HHHHHHHHHHHHHcCCCCEEE
Confidence 0 12699999721 1222321 223579999999999999999
Q ss_pred EEeCCCCC
Q 004775 233 YSTCSMNP 240 (731)
Q Consensus 233 YSTCSl~p 240 (731)
.....+..
T Consensus 305 i~e~~~~~ 312 (369)
T 3gwz_A 305 VIDNLIDE 312 (369)
T ss_dssp EEEEBCCS
T ss_pred EEEeccCC
Confidence 87665544
No 241
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.25 E-value=5.6e-06 Score=90.96 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=71.5
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCC------------------------------CCCCeEEEEEeCCH
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG------------------------------ALPNGMVIANDLDV 121 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~------------------------------~~p~G~VvAnDid~ 121 (731)
.+++..++..|||.|||+|..++.+|.+..+-. ++ ..+...|+|+|+|+
T Consensus 195 ~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~a-pg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~ 273 (393)
T 3k0b_A 195 LLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIA-PGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDA 273 (393)
T ss_dssp HHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCC-TTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred HHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcC-CCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCH
Confidence 345678899999999999999988877654310 00 01235699999999
Q ss_pred HHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 122 QRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 122 ~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
..+..++.|+++.|.. ++.+.+.|+..++. ...||.|++|||.
T Consensus 274 ~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~----------------------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 274 RLIEIAKQNAVEAGLGDLITFRQLQVADFQT----------------------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEECCGGGCCC----------------------CCCSCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChHhCCC----------------------CCCCCEEEECCCC
Confidence 9999999999999986 48889998877531 1479999999995
No 242
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.25 E-value=7.3e-06 Score=89.86 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=71.2
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCC------------------------------CCCCeEEEEEeCCHH
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG------------------------------ALPNGMVIANDLDVQ 122 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~------------------------------~~p~G~VvAnDid~~ 122 (731)
+...+++..|||.|||+|...+.+|.+..+- .+| ......|+|+|+|+.
T Consensus 189 l~~~~~~~~llDp~CGSGt~lIEAa~~a~~i-apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~ 267 (384)
T 3ldg_A 189 LSNWFPDKPFVDPTCGSGTFCIEAAMIGMNI-APGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR 267 (384)
T ss_dssp HTTCCTTSCEEETTCTTSHHHHHHHHHHTTC-CTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HhCCCCCCeEEEeCCcCCHHHHHHHHHhcCc-CCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH
Confidence 4467889999999999999998887764421 000 011356999999999
Q ss_pred HHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 123 RCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 123 R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
.+..+++|+++.|..+ +.+.+.|+..++. ...||.|++|||.
T Consensus 268 al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~----------------------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 268 MVEIARKNAREVGLEDVVKLKQMRLQDFKT----------------------NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEECCGGGCCC----------------------CCCSCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCceEEEECChHHCCc----------------------cCCcCEEEECCch
Confidence 9999999999999864 8899999877541 1479999999996
No 243
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.25 E-value=3.5e-06 Score=99.65 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=83.9
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeccccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------CTANLIVTNHEAQH 148 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl------g~~ni~vt~~Da~~ 148 (731)
...++.+|||+|||+|..+..|++... +.+.|+|+|+++..+..++++++.. +..++.+...|+..
T Consensus 718 ~~~~g~rVLDVGCGTG~lai~LAr~g~--------p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 718 RESSASTLVDFGCGSGSLLDSLLDYPT--------SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHSCCSEEEEETCSSSHHHHHHTSSCC--------CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred cccCCCEEEEECCCCCHHHHHHHHhCC--------CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 445899999999999999888866421 2369999999999999998877643 56789999999877
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
++. ....||+|+|. +++.+-++ ....+++..+.++||||
T Consensus 790 Lp~---------------------~d~sFDlVV~~------eVLeHL~d--------------p~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 790 FDS---------------------RLHDVDIGTCL------EVIEHMEE--------------DQACEFGEKVLSLFHPK 828 (950)
T ss_dssp CCT---------------------TSCSCCEEEEE------SCGGGSCH--------------HHHHHHHHHHHHTTCCS
T ss_pred CCc---------------------ccCCeeEEEEe------CchhhCCh--------------HHHHHHHHHHHHHcCCC
Confidence 542 12679999982 22222111 12346788999999998
Q ss_pred CEEEEEeCC
Q 004775 229 GRIVYSTCS 237 (731)
Q Consensus 229 G~LVYSTCS 237 (731)
.++.+|..
T Consensus 829 -~LIISTPN 836 (950)
T 3htx_A 829 -LLIVSTPN 836 (950)
T ss_dssp -EEEEEECB
T ss_pred -EEEEEecC
Confidence 88888764
No 244
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.24 E-value=1.4e-06 Score=90.61 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=74.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEecccccCCCcc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR----MCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR----lg~~ni~vt~~Da~~fp~~~ 153 (731)
.+.+|||+|||.|+.+..++.. + +.|+++|+|+..++.+++++.. +..+++.+...|+..+.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~----------~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--- 137 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY----------D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--- 137 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS----------S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---
T ss_pred CCCEEEEEeCCcCHHHHHHHhC----------C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---
Confidence 4579999999999987776542 3 6899999999999988776532 23457888888876642
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
.+||+|++|.+ +|. ..+..+.++|||||++|.
T Consensus 138 ---------------------~~fD~Ii~d~~---------dp~------------------~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 138 ---------------------KKYDLIFCLQE---------PDI------------------HRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp ---------------------CCEEEEEESSC---------CCH------------------HHHHHHHTTEEEEEEEEE
T ss_pred ---------------------hhCCEEEECCC---------ChH------------------HHHHHHHHhcCCCcEEEE
Confidence 46999999853 111 157788999999999998
Q ss_pred EeCC
Q 004775 234 STCS 237 (731)
Q Consensus 234 STCS 237 (731)
.+++
T Consensus 170 ~~~~ 173 (262)
T 2cmg_A 170 VAKH 173 (262)
T ss_dssp EEEC
T ss_pred EcCC
Confidence 7655
No 245
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.24 E-value=2.2e-06 Score=93.74 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=83.9
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~ 155 (731)
-+|.+|||++||+|-.+..+|++ +...|+|+|.++ .+..++++++.+|.. .|.+++.+...+..
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a----------GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l---- 146 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA----------GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL---- 146 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC----
T ss_pred cCCCEEEEeCCCccHHHHHHHHh----------CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC----
Confidence 36889999999999888766653 246899999996 678888888888875 58888888766421
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
+.+||+|++..- |.+.+.. .....++...-++|||||+++-+.
T Consensus 147 ------------------pe~~DvivsE~~--~~~l~~e-----------------~~l~~~l~a~~r~Lkp~G~~iP~~ 189 (376)
T 4hc4_A 147 ------------------PEQVDAIVSEWM--GYGLLHE-----------------SMLSSVLHARTKWLKEGGLLLPAS 189 (376)
T ss_dssp ------------------SSCEEEEECCCC--BTTBTTT-----------------CSHHHHHHHHHHHEEEEEEEESCE
T ss_pred ------------------CccccEEEeecc--ccccccc-----------------chhhhHHHHHHhhCCCCceECCcc
Confidence 257999998542 2222100 011235555568999999999887
Q ss_pred CCC--CCcCcHHH
Q 004775 236 CSM--NPVENEAV 246 (731)
Q Consensus 236 CSl--~p~ENEaV 246 (731)
|++ .|+|.+..
T Consensus 190 atly~apie~~~l 202 (376)
T 4hc4_A 190 AELFIVPISDQML 202 (376)
T ss_dssp EEEEEEEECCHHH
T ss_pred ceEEEEEeccchh
Confidence 774 47887654
No 246
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=98.23 E-value=8.5e-06 Score=86.19 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~~ 153 (731)
+..+ .+|||+|||+|..+..+++.. |...++++|+ +..+..+++++.+.+. .++.+..+|... + .
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~- 230 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAE---------PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-V- 230 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHC---------TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-C-
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHC---------CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-C-
Confidence 4556 899999999999999998874 3568999999 9999999888877664 468888887644 1 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...||.|++-- ++..|.. ....++|+++.+.|||||+|+.
T Consensus 231 --------------------~~~~D~v~~~~-------------vl~~~~~-------~~~~~~l~~~~~~L~pgG~l~i 270 (334)
T 2ip2_A 231 --------------------PSNGDIYLLSR-------------IIGDLDE-------AASLRLLGNCREAMAGDGRVVV 270 (334)
T ss_dssp --------------------CSSCSEEEEES-------------CGGGCCH-------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------------------CCCCCEEEEch-------------hccCCCH-------HHHHHHHHHHHHhcCCCCEEEE
Confidence 14699999621 1222321 2236789999999999999998
Q ss_pred EeCCCC
Q 004775 234 STCSMN 239 (731)
Q Consensus 234 STCSl~ 239 (731)
....+.
T Consensus 271 ~e~~~~ 276 (334)
T 2ip2_A 271 IERTIS 276 (334)
T ss_dssp EECCBC
T ss_pred EEeccC
Confidence 865543
No 247
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=98.21 E-value=2.8e-07 Score=95.37 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEe
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD 118 (731)
++||++|||+||||||||..+++..+-. ...|.|+|+|
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg-----~V~G~vig~D 108 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQ-----EVRGYTKGGP 108 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEE-----EEEEECCCST
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCC-----CceeEEEccc
Confidence 5899999999999999999998862210 0147888888
No 248
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.19 E-value=3.3e-06 Score=89.41 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=68.3
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++. +.+++.+++.|+..++
T Consensus 43 v~~l~~~~~~~VLEIG~G~G~lT~~La~~-----------~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~ 109 (295)
T 3gru_A 43 VESANLTKDDVVLEIGLGKGILTEELAKN-----------AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVD 109 (295)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSC
T ss_pred HHhcCCCCcCEEEEECCCchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCC
Confidence 44567889999999999999999999886 3689999999999999999887 4568999999987753
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
- ....||+|+++.|.
T Consensus 110 ~---------------------~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 110 L---------------------NKLDFNKVVANLPY 124 (295)
T ss_dssp G---------------------GGSCCSEEEEECCG
T ss_pred c---------------------ccCCccEEEEeCcc
Confidence 1 12469999999883
No 249
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.16 E-value=8.1e-06 Score=85.38 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
++++.+|||+|||||++|..+++..+ .+.|+|+|+........+. ....+. +++....++...
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~---------~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~------ 134 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE---------VSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIH------ 134 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT---------EEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTT------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC---------CCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceeh------
Confidence 57899999999999999998876532 3566777765321000000 000011 334333332111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC-CEEEEE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG-GRIVYS 234 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG-G~LVYS 234 (731)
......||.||||..-+ +|. .|.. +..+..+|.-|.++|||| |.+|..
T Consensus 135 ---------------~l~~~~~DlVlsD~apn-sG~------~~~D---------~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 135 ---------------RLEPVKCDTLLCDIGES-SSS------SVTE---------GERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp ---------------TSCCCCCSEEEECCCCC-CSC------HHHH---------HHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ---------------hcCCCCccEEEecCccC-cCc------hHHH---------HHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11236799999997545 553 1111 123344589999999999 999986
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
.
T Consensus 184 V 184 (277)
T 3evf_A 184 V 184 (277)
T ss_dssp E
T ss_pred e
Confidence 4
No 250
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.15 E-value=3.3e-06 Score=83.18 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=80.0
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
.+....++.+|||+|||+|..+..+ ...|+++|+++. ++.+...|+..++
T Consensus 61 ~l~~~~~~~~vLDiG~G~G~~~~~l--------------~~~v~~~D~s~~---------------~~~~~~~d~~~~~- 110 (215)
T 2zfu_A 61 DLRQRPASLVVADFGCGDCRLASSI--------------RNPVHCFDLASL---------------DPRVTVCDMAQVP- 110 (215)
T ss_dssp HHHTSCTTSCEEEETCTTCHHHHHC--------------CSCEEEEESSCS---------------STTEEESCTTSCS-
T ss_pred HHhccCCCCeEEEECCcCCHHHHHh--------------hccEEEEeCCCC---------------CceEEEeccccCC-
Confidence 3334578899999999999977665 147999999987 3345566665532
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||.|++... +. .+ ....+|..+.++|+|||++
T Consensus 111 --------------------~~~~~fD~v~~~~~------l~-~~----------------~~~~~l~~~~~~L~~gG~l 147 (215)
T 2zfu_A 111 --------------------LEDESVDVAVFCLS------LM-GT----------------NIRDFLEEANRVLKPGGLL 147 (215)
T ss_dssp --------------------CCTTCEEEEEEESC------CC-SS----------------CHHHHHHHHHHHEEEEEEE
T ss_pred --------------------CCCCCEeEEEEehh------cc-cc----------------CHHHHHHHHHHhCCCCeEE
Confidence 11257999997332 10 01 1246788899999999999
Q ss_pred EEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 232 VYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+.+++.. ...+..-+..+|++.| |+++..
T Consensus 148 ~i~~~~~-~~~~~~~~~~~l~~~G--f~~~~~ 176 (215)
T 2zfu_A 148 KVAEVSS-RFEDVRTFLRAVTKLG--FKIVSK 176 (215)
T ss_dssp EEEECGG-GCSCHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEcCC-CCCCHHHHHHHHHHCC--CEEEEE
Confidence 9987653 2236777888888876 566554
No 251
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.14 E-value=1.2e-07 Score=96.84 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=67.7
Q ss_pred chhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.....+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..++++++ +..++.+.+.|+..
T Consensus 20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-----------~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~ 86 (245)
T 1yub_A 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-----------SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQ 86 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-----------SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTT
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-----------CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhh
Confidence 3344567889999999999999999999876 2689999999999888777654 34678888888877
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004775 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (731)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdG 190 (731)
++.. ....| .|++++|.....
T Consensus 87 ~~~~--------------------~~~~f-~vv~n~Py~~~~ 107 (245)
T 1yub_A 87 FQFP--------------------NKQRY-KIVGNIPYHLST 107 (245)
T ss_dssp TTCC--------------------CSSEE-EEEEECCSSSCH
T ss_pred cCcc--------------------cCCCc-EEEEeCCccccH
Confidence 5410 01468 899999976543
No 252
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.14 E-value=3.7e-06 Score=88.93 Aligned_cols=99 Identities=19% Similarity=0.113 Sum_probs=66.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-ecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT-NHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt-~~Da~~fp~~~~~~ 156 (731)
+|.+|||++||+|+.|..|++. +.+.|+|+|+++..++...++ . +++... ..++..++.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~----------ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~----- 144 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN----------GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEP----- 144 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----------TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCG-----
T ss_pred cccEEEecCCCccHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecch-----
Confidence 5789999999999999988774 247999999999887653221 1 233222 222222211
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.......||.|+||+.... + ..+|....++|||||++|..
T Consensus 145 -------------~~l~~~~fD~v~~d~sf~s---------------------l----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 145 -------------VDFTEGLPSFASIDVSFIS---------------------L----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp -------------GGCTTCCCSEEEECCSSSC---------------------G----GGTHHHHHHHSCTTCEEEEE
T ss_pred -------------hhCCCCCCCEEEEEeeHhh---------------------H----HHHHHHHHHHcCcCCEEEEE
Confidence 0111235999999875221 1 34788889999999999986
No 253
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.13 E-value=5.8e-06 Score=82.05 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|+.+|||+|||+|..+..++. . +++|+++..+..++.+ ++.+...|+..++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~------------~---~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------ 98 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI------------K---IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------ 98 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC------------C---EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS------
T ss_pred CCCcEEEeCCCCCHHHHHHHH------------H---hccCCCHHHHHHHHhc-------CCEEEEcccccCCC------
Confidence 488999999999998776521 2 8999999998887765 46677777655431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
....||.|++.. ++...+ ....+|..+.++|+|||+++.++..
T Consensus 99 ---------------~~~~fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 99 ---------------KDESFDFALMVT------TICFVD----------------DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp ---------------CTTCEEEEEEES------CGGGSS----------------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------------CCCCeeEEEEcc------hHhhcc----------------CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 125799999742 221111 1246889999999999999998754
Q ss_pred C
Q 004775 238 M 238 (731)
Q Consensus 238 l 238 (731)
.
T Consensus 142 ~ 142 (219)
T 1vlm_A 142 R 142 (219)
T ss_dssp S
T ss_pred C
Confidence 3
No 254
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=98.11 E-value=1.7e-05 Score=84.44 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=86.5
Q ss_pred cCCCC-CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004775 74 LDVQP-DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (731)
Q Consensus 74 Ld~~p-g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~ 151 (731)
++..+ +.+|||+|||+|..+..+++.. |...++++|+ +..+..+++++.+.+.. ++.+..+|....+.
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRH---------PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHC---------TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhC---------CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 35566 8899999999999999998874 3578999999 88899999888888764 58888888765321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.....||.|++-- ++..|.. ....++|+++.+.|||||+|
T Consensus 244 --------------------~~~~~~D~v~~~~-------------vlh~~~~-------~~~~~~l~~~~~~L~pgG~l 283 (352)
T 3mcz_A 244 --------------------FEGGAADVVMLND-------------CLHYFDA-------REAREVIGHAAGLVKPGGAL 283 (352)
T ss_dssp --------------------GTTCCEEEEEEES-------------CGGGSCH-------HHHHHHHHHHHHTEEEEEEE
T ss_pred --------------------cCCCCccEEEEec-------------ccccCCH-------HHHHHHHHHHHHHcCCCCEE
Confidence 0124699999711 1222321 12467999999999999999
Q ss_pred EEEeCCCCC
Q 004775 232 VYSTCSMNP 240 (731)
Q Consensus 232 VYSTCSl~p 240 (731)
+.....+..
T Consensus 284 ~i~e~~~~~ 292 (352)
T 3mcz_A 284 LILTMTMND 292 (352)
T ss_dssp EEEEECCCT
T ss_pred EEEEeccCC
Confidence 987665543
No 255
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=98.10 E-value=1.1e-05 Score=85.08 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
++|.+|||+||||||+|..+++.++ ...|+++|+...-....+ ....++ .+++........
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~g---------v~sV~Gvdlg~~~~~~P~-~~~~~~-~~iv~~~~~~di-------- 140 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKE---------VMSVKGYTLGIEGHEKPI-HMQTLG-WNIVKFKDKSNV-------- 140 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT---------EEEEEEECCCCTTSCCCC-CCCBTT-GGGEEEECSCCT--------
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcC---------CceeeeEEeccccccccc-cccccC-CceEEeecCcee--------
Confidence 5899999999999999999987542 357889998542100000 000001 122221111110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC-CEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG-GRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG-G~LVYS 234 (731)
.......||.|+||.-.+ +|.- + . =+..|..||.-|.++|++| |.+|.-
T Consensus 141 -------------~~l~~~~~DlVlsD~APn-sG~~----~------~-----D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 141 -------------FTMPTEPSDTLLCDIGES-SSNP----L------V-----ERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp -------------TTSCCCCCSEEEECCCCC-CSSH----H------H-----HHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred -------------eecCCCCcCEEeecCcCC-CCCH----H------H-----HHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 011236799999998777 7741 1 0 1233455699999999999 999865
No 256
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.10 E-value=9.7e-07 Score=91.59 Aligned_cols=85 Identities=16% Similarity=0.026 Sum_probs=66.2
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH-------HHHHHHHHHHHHcCCCc-eEEEe
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-------QRCNLLIHQTKRMCTAN-LIVTN 143 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~-------~R~~~L~~n~kRlg~~n-i~vt~ 143 (731)
.++.+.++.+|||+|||.|..|..+|.. .+.|+|+|+++ ..++.+++|++.++..+ +.+.+
T Consensus 77 ~a~~~~~~~~VLDlgcG~G~~a~~lA~~-----------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~ 145 (258)
T 2r6z_A 77 KAVNHTAHPTVWDATAGLGRDSFVLASL-----------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHF 145 (258)
T ss_dssp HHTTGGGCCCEEETTCTTCHHHHHHHHT-----------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEE
T ss_pred HHhCcCCcCeEEEeeCccCHHHHHHHHh-----------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEE
Confidence 3346677899999999999999999874 36899999999 88888888887777655 88999
Q ss_pred cccccCCCcccCCCCCCCCcccccccccccc--ccccEEEecCCC
Q 004775 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQ--LLFDRVLCDVPC 186 (731)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~--~~FDrIL~D~PC 186 (731)
.|+..+.. .... ..||.|++|||-
T Consensus 146 ~d~~~~l~-------------------~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 146 GNAAEQMP-------------------ALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp SCHHHHHH-------------------HHHHHHCCCSEEEECCCC
T ss_pred CCHHHHHH-------------------hhhccCCCccEEEECCCC
Confidence 98876311 0111 479999999974
No 257
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.08 E-value=4.1e-06 Score=92.26 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=74.0
Q ss_pred CCCEEEeeccC------cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004775 78 PDHFVLDMCAA------PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (731)
Q Consensus 78 pg~~VLDmCAA------PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~ 151 (731)
++.+|||+||| +|+.++.++.... |.+.|+++|+++.+. ...+++.+...|+..++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f--------P~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf 278 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFF--------PRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEF 278 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHC--------TTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhC--------CCCEEEEEECCHHHh---------hcCCCcEEEEecccccch
Confidence 56899999999 7788888877642 468999999999862 234688999999876432
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.. ........||.|++|.. - ....+.+.|..+.++|||||++
T Consensus 279 ~~---------------~l~~~d~sFDlVisdgs----H-------------------~~~d~~~aL~el~rvLKPGGvl 320 (419)
T 3sso_A 279 LD---------------RIARRYGPFDIVIDDGS----H-------------------INAHVRTSFAALFPHVRPGGLY 320 (419)
T ss_dssp HH---------------HHHHHHCCEEEEEECSC----C-------------------CHHHHHHHHHHHGGGEEEEEEE
T ss_pred hh---------------hhhcccCCccEEEECCc----c-------------------cchhHHHHHHHHHHhcCCCeEE
Confidence 10 00001368999998641 0 0123457899999999999999
Q ss_pred EEEeC
Q 004775 232 VYSTC 236 (731)
Q Consensus 232 VYSTC 236 (731)
+.+..
T Consensus 321 Vi~Dl 325 (419)
T 3sso_A 321 VIEDM 325 (419)
T ss_dssp EEECG
T ss_pred EEEec
Confidence 98743
No 258
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.07 E-value=8.7e-06 Score=83.29 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=55.6
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++.. ..++.+.+.|+..++
T Consensus 24 ~~~~~~~~~~VLDiG~G~G~lt~~l~~~-----------~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~ 89 (244)
T 1qam_A 24 TNIRLNEHDNIFEIGSGKGHFTLELVQR-----------CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFK 89 (244)
T ss_dssp TTCCCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCC
T ss_pred HhCCCCCCCEEEEEeCCchHHHHHHHHc-----------CCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCC
Confidence 3456788999999999999999999886 36899999999999999887653 357899999987754
No 259
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=98.07 E-value=5.2e-06 Score=90.40 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+++|++|||+||||||+|.+|++. .+.|+|+|..+-. .. ....+++.+...|+..+..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-----------g~~V~aVD~~~l~-----~~--l~~~~~V~~~~~d~~~~~~---- 266 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-----------NMWVYSVDNGPMA-----QS--LMDTGQVTWLREDGFKFRP---- 266 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-----------TCEEEEECSSCCC-----HH--HHTTTCEEEECSCTTTCCC----
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-----------CCEEEEEEhhhcC-----hh--hccCCCeEEEeCccccccC----
Confidence 579999999999999999999775 5899999975311 11 1234688888888776421
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
....||.|+||+-|.-
T Consensus 267 -----------------~~~~~D~vvsDm~~~p 282 (375)
T 4auk_A 267 -----------------TRSNISWMVCDMVEKP 282 (375)
T ss_dssp -----------------CSSCEEEEEECCSSCH
T ss_pred -----------------CCCCcCEEEEcCCCCh
Confidence 1257999999997543
No 260
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.06 E-value=2.6e-05 Score=91.71 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=87.8
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCC----------------------------------CCCeEEEEEe
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGA----------------------------------LPNGMVIAND 118 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~----------------------------------~p~G~VvAnD 118 (731)
+....++..|||.|||+|...+.+|.+..+- .++. .+...|+|+|
T Consensus 185 ~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~-apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~D 263 (703)
T 3v97_A 185 RSGWQPGTPLLDPMCGSGTLLIEAAMLATDR-APGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSD 263 (703)
T ss_dssp HTTCCTTSCEEETTCTTSHHHHHHHHHHTTC-CTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred hhCCCCCCeEEecCCCCcHHHHHHHHHHhhc-CCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEE
Confidence 3456789999999999999998887764321 0100 1235899999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004775 119 LDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (731)
Q Consensus 119 id~~R~~~L~~n~kRlg~~n-i~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd 197 (731)
+|+..+..++.|+.+.|+.+ +.+.+.|+..+..- .....||.|+++||.. .. +
T Consensus 264 id~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~-------------------~~~~~~d~Iv~NPPYG-~R-l----- 317 (703)
T 3v97_A 264 SDARVIQRARTNARLAGIGELITFEVKDVAQLTNP-------------------LPKGPYGTVLSNPPYG-ER-L----- 317 (703)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS-------------------CTTCCCCEEEECCCCC-C--------
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc-------------------cccCCCCEEEeCCCcc-cc-c-----
Confidence 99999999999999999875 88889988775210 0113799999999962 11 0
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 198 ~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.....+..+.. .+.+.++.+.+||++..-|
T Consensus 318 -------g~~~~l~~ly~-~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 318 -------DSEPALIALHS-LLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp --------CCHHHHHHHH-HHHHHHHHHCTTCEEEEEE
T ss_pred -------cchhHHHHHHH-HHHHHHHhhCCCCeEEEEe
Confidence 11112333333 3566677778999887653
No 261
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.04 E-value=5e-05 Score=79.02 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=76.9
Q ss_pred CCCEEEeeccCc---chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 78 PDHFVLDMCAAP---GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 78 pg~~VLDmCAAP---GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+..+|||+|||+ |..+..+++. . |.+.|+++|+|+..+..+++++.. ..++.++..|+...+.+.-
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~--------p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~ 145 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-N--------PDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILN 145 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-C--------TTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-C--------CCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhc
Confidence 457999999999 9865544333 2 457999999999999988887632 3578888888765211000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.. ..........||.|++- +++..-++ . ...++|++..+.|||||+|+.+
T Consensus 146 ~~----------~~~~~~d~~~~d~v~~~------~vlh~~~d-------~-------~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 146 HP----------DVRRMIDFSRPAAIMLV------GMLHYLSP-------D-------VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp SH----------HHHHHCCTTSCCEEEET------TTGGGSCT-------T-------THHHHHHHHHHHSCTTCEEEEE
T ss_pred cc----------hhhccCCCCCCEEEEEe------chhhhCCc-------H-------HHHHHHHHHHHhCCCCcEEEEE
Confidence 00 00000112478999862 22211111 0 1356899999999999999998
Q ss_pred eCCC
Q 004775 235 TCSM 238 (731)
Q Consensus 235 TCSl 238 (731)
+...
T Consensus 196 ~~~~ 199 (274)
T 2qe6_A 196 SLVD 199 (274)
T ss_dssp EEBC
T ss_pred EecC
Confidence 7654
No 262
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.04 E-value=4e-06 Score=87.19 Aligned_cols=125 Identities=11% Similarity=0.019 Sum_probs=85.0
Q ss_pred hhhcCCCCC--CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC--------C-Cce
Q 004775 71 PLFLDVQPD--HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC--------T-ANL 139 (731)
Q Consensus 71 ~llLd~~pg--~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg--------~-~ni 139 (731)
..++.+++| .+|||++||.|.-++.+|.. .+.|+++|+++..+.++++++++.. . .++
T Consensus 79 ~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-----------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i 147 (258)
T 2oyr_A 79 AKAVGIKGDYLPDVVDATAGLGRDAFVLASV-----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL 147 (258)
T ss_dssp HHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-----------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE
T ss_pred HHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCE
Confidence 345566777 99999999999999999886 2579999999999999999887542 2 468
Q ss_pred EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHH
Q 004775 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM 219 (731)
Q Consensus 140 ~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~ 219 (731)
.+.+.|+..+... . ...||.|++|||..... . ...++
T Consensus 148 ~~~~~D~~~~L~~-------------------~-~~~fDvV~lDP~y~~~~--------------~---------saavk 184 (258)
T 2oyr_A 148 QLIHASSLTALTD-------------------I-TPRPQVVYLDPMFPHKQ--------------K---------SALVK 184 (258)
T ss_dssp EEEESCHHHHSTT-------------------C-SSCCSEEEECCCCCCCC--------------C--------------
T ss_pred EEEECCHHHHHHh-------------------C-cccCCEEEEcCCCCCcc--------------c---------chHHH
Confidence 8999988764210 0 13699999999853210 0 01233
Q ss_pred HHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCc
Q 004775 220 RGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 257 (731)
Q Consensus 220 rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~ 257 (731)
..++.|++.+ .| ..+.++++..+++.....
T Consensus 185 k~~~~lr~l~-----~~---~~~~~~ll~~a~~~a~~r 214 (258)
T 2oyr_A 185 KEMRVFQSLV-----GP---DLDADGLLEPARLLATKR 214 (258)
T ss_dssp HHHHHHHHHS-----CC---CTTGGGGHHHHHHHCSSE
T ss_pred HHHHHHHHhh-----cC---CccHHHHHHHHHHhcCCe
Confidence 3444454433 23 346778888888876433
No 263
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.02 E-value=1.6e-06 Score=90.88 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
++|+.+|||+|||||+++..+++.. +...|+++|+........+. .+.++ .+++....++..
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~---------gv~sV~GvdvG~d~~~~pi~-~~~~g-~~ii~~~~~~dv------- 149 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK---------NVKKVMAFTLGVQGHEKPIM-RTTLG-WNLIRFKDKTDV------- 149 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST---------TEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCG-------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---------CCCeeeeEEeccCccccccc-cccCC-CceEEeeCCcch-------
Confidence 5789999999999999999887643 24678899986531000000 00011 122222111110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC--CEEEE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG--GRIVY 233 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG--G~LVY 233 (731)
......+||+||||.--+ +|.- +. =+..+..+|.-|.++|+|| |.+|.
T Consensus 150 --------------~~l~~~~~DvVLSDmApn-sG~~------~~---------D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 150 --------------FNMEVIPGDTLLCDIGES-SPSI------AV---------EEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp --------------GGSCCCCCSEEEECCCCC-CSCH------HH---------HHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred --------------hhcCCCCcCEEEecCccC-CCCh------HH---------HHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 012236899999997545 6641 00 1223345588999999999 99886
Q ss_pred E
Q 004775 234 S 234 (731)
Q Consensus 234 S 234 (731)
-
T Consensus 200 K 200 (282)
T 3gcz_A 200 K 200 (282)
T ss_dssp E
T ss_pred E
Confidence 4
No 264
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=98.01 E-value=7.3e-06 Score=89.58 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=70.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE--EEecccccCC
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI--VTNHEAQHFP 150 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~--vt~~Da~~fp 150 (731)
.+.+.++.+|||++||+|..+..+++. ...|+++|+++..++.++++ +..... +...++..
T Consensus 102 ~~~~~~~~~VLDiGcG~G~~~~~l~~~-----------g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~-- 164 (416)
T 4e2x_A 102 TELTGPDPFIVEIGCNDGIMLRTIQEA-----------GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADD-- 164 (416)
T ss_dssp TTTCSSSCEEEEETCTTTTTHHHHHHT-----------TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHH--
T ss_pred HhCCCCCCEEEEecCCCCHHHHHHHHc-----------CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhh--
Confidence 345678999999999999988888764 25899999999988766543 333211 00011111
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~ 230 (731)
.......||+|++. +++.+-+ ....+|+.+.++|||||+
T Consensus 165 -------------------l~~~~~~fD~I~~~------~vl~h~~----------------d~~~~l~~~~r~LkpgG~ 203 (416)
T 4e2x_A 165 -------------------VRRTEGPANVIYAA------NTLCHIP----------------YVQSVLEGVDALLAPDGV 203 (416)
T ss_dssp -------------------HHHHHCCEEEEEEE------SCGGGCT----------------THHHHHHHHHHHEEEEEE
T ss_pred -------------------cccCCCCEEEEEEC------ChHHhcC----------------CHHHHHHHHHHHcCCCeE
Confidence 11224689999973 2222221 135678999999999999
Q ss_pred EEEEeC
Q 004775 231 IVYSTC 236 (731)
Q Consensus 231 LVYSTC 236 (731)
++.++-
T Consensus 204 l~i~~~ 209 (416)
T 4e2x_A 204 FVFEDP 209 (416)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999853
No 265
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.98 E-value=2.3e-06 Score=87.24 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=64.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-cccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN-HEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~-~Da~~fp~~~~~~ 156 (731)
++.+|||+|||+|..|..+++. + ...|+|+|+++..+....++. +.+.+.. .+...+..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g---------~~~V~gvDis~~ml~~a~~~~-----~~~~~~~~~~~~~~~~----- 96 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-G---------AKLVYALDVGTNQLAWKIRSD-----ERVVVMEQFNFRNAVL----- 96 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T---------CSEEEEECSSCCCCCHHHHTC-----TTEEEECSCCGGGCCG-----
T ss_pred CCCEEEEEccCCCHHHHHHHhc-C---------CCEEEEEcCCHHHHHHHHHhC-----ccccccccceEEEeCH-----
Confidence 4679999999999999998775 1 359999999999887644432 2222211 11111100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
.......||.+.+|+..+.. ..+|..+.++|||||+++..+
T Consensus 97 -------------~~~~~~~~d~~~~D~v~~~l-------------------------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 97 -------------ADFEQGRPSFTSIDVSFISL-------------------------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp -------------GGCCSCCCSEEEECCSSSCG-------------------------GGTHHHHHHHSCTTCEEEEEE
T ss_pred -------------hHcCcCCCCEEEEEEEhhhH-------------------------HHHHHHHHHhccCCCEEEEEE
Confidence 00111236777777754321 347888999999999999853
No 266
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.92 E-value=1.2e-05 Score=83.24 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=57.2
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++.. ..++.+.++|+..++
T Consensus 22 v~~~~~~~~~~VLEIG~G~G~lt~~La~~-----------~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~ 88 (255)
T 3tqs_A 22 VSAIHPQKTDTLVEIGPGRGALTDYLLTE-----------CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFD 88 (255)
T ss_dssp HHHHCCCTTCEEEEECCTTTTTHHHHTTT-----------SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCC
T ss_pred HHhcCCCCcCEEEEEcccccHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCC
Confidence 34567889999999999999999998764 36899999999999999988754 468999999998764
No 267
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=97.92 E-value=6e-05 Score=80.57 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=73.5
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp~~ 152 (731)
++..++.+|||+|||+|..+..+++.. |...++++|++ ..+. ..++++.+. .++.+..+|+.. +
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~-- 244 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREH---------PGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-E-- 244 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHC---------TTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-C--
T ss_pred CCccCCceEEEECCccCHHHHHHHHHC---------CCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-C--
Confidence 467789999999999999999998874 35789999993 3222 222222232 357788777641 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
. + .||.|++-- ++..|.. ....++|+++.+.|||||+|+
T Consensus 245 -------------------~-p-~~D~v~~~~-------------vlh~~~d-------~~~~~~L~~~~~~LkpgG~l~ 283 (348)
T 3lst_A 245 -------------------V-P-HADVHVLKR-------------ILHNWGD-------EDSVRILTNCRRVMPAHGRVL 283 (348)
T ss_dssp -------------------C-C-CCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHTCCTTCEEE
T ss_pred -------------------C-C-CCcEEEEeh-------------hccCCCH-------HHHHHHHHHHHHhcCCCCEEE
Confidence 1 1 699998711 1222321 122678999999999999999
Q ss_pred EEeCCCC
Q 004775 233 YSTCSMN 239 (731)
Q Consensus 233 YSTCSl~ 239 (731)
.....+.
T Consensus 284 i~e~~~~ 290 (348)
T 3lst_A 284 VIDAVVP 290 (348)
T ss_dssp EEECCBC
T ss_pred EEEeccC
Confidence 8765443
No 268
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.91 E-value=3.5e-05 Score=80.67 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=72.4
Q ss_pred CCCEEEeeccCcch----HHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH--------------Hc-----
Q 004775 78 PDHFVLDMCAAPGS----KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK--------------RM----- 134 (731)
Q Consensus 78 pg~~VLDmCAAPGs----KT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k--------------Rl----- 134 (731)
++.+|||+|||+|- .+..|++.++.. .....|+|.|+|+..++.+++++- +.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~-----~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~ 179 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMA-----PGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT 179 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSC-----TTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccC-----CCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccc
Confidence 45799999999998 444555554321 002589999999999999887641 10
Q ss_pred ----C---C-----CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhc
Q 004775 135 ----C---T-----ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW 202 (731)
Q Consensus 135 ----g---~-----~ni~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w 202 (731)
| + .++.+..+|....|- .....||.|+|- .++ ++ +
T Consensus 180 ~~~~~~~~v~~~lr~~V~F~~~dl~~~~~--------------------~~~~~fDlI~cr------nvl-----iy--f 226 (274)
T 1af7_A 180 GPHEGLVRVRQELANYVEFSSVNLLEKQY--------------------NVPGPFDAIFCR------NVM-----IY--F 226 (274)
T ss_dssp TTSCSEEEECHHHHTTEEEEECCTTCSSC--------------------CCCCCEEEEEEC------SSG-----GG--S
T ss_pred cCCCCceeechhhcccCeEEecccCCCCC--------------------CcCCCeeEEEEC------Cch-----Hh--C
Confidence 0 0 146666666544110 002579999981 111 10 0
Q ss_pred ccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 203 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 203 ~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
-...|.+++.+..+.|+|||.|+..
T Consensus 227 -------~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 227 -------DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp -------CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred -------CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1245789999999999999999874
No 269
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.87 E-value=8e-05 Score=74.76 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=82.5
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccC----
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHF---- 149 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~---~ni~vt~~Da~~f---- 149 (731)
++..+||++++ |.-|+.+|++ +.|.|+++|.|+.+++.+++++++.|. .++.+..+|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~----------~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg 96 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAEL----------PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWG 96 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTS----------TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGG
T ss_pred hCCCEEEEECc--hHHHHHHHHc----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhccc
Confidence 35679999997 5667777653 148999999999999999999999984 5788888886532
Q ss_pred -CCcccCCCCCCCCcccccccc--ccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 150 -PGCRANKNFSSASDKGIESES--NMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 150 -p~~~~~~~~~~~~~~~~~~~~--~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
|.-... . .+ ...+.... ......||.|++|+. |. ..-+..++.+|+
T Consensus 97 ~p~~~~~-~--~~-l~~~~~~i~~~~~~~~fDlIfIDg~--------k~-------------------~~~~~~~l~~l~ 145 (202)
T 3cvo_A 97 HPVSDAK-W--RS-YPDYPLAVWRTEGFRHPDVVLVDGR--------FR-------------------VGCALATAFSIT 145 (202)
T ss_dssp CBSSSTT-G--GG-TTHHHHGGGGCTTCCCCSEEEECSS--------SH-------------------HHHHHHHHHHCS
T ss_pred ccccchh-h--hh-HHHHhhhhhccccCCCCCEEEEeCC--------Cc-------------------hhHHHHHHHhcC
Confidence 110000 0 00 00000000 001257999999974 00 023445789999
Q ss_pred CCCEEEEEeCCCCCcCcHHHHHHHHH
Q 004775 227 VGGRIVYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 227 pGG~LVYSTCSl~p~ENEaVV~~~L~ 252 (731)
+||+||.=-.+. -.....|..+++
T Consensus 146 ~GG~Iv~DNv~~--r~~y~~v~~~~~ 169 (202)
T 3cvo_A 146 RPVTLLFDDYSQ--RRWQHQVEEFLG 169 (202)
T ss_dssp SCEEEEETTGGG--CSSGGGGHHHHC
T ss_pred CCeEEEEeCCcC--CcchHHHHHHHh
Confidence 999997643222 234456677775
No 270
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.79 E-value=1.7e-05 Score=83.37 Aligned_cols=85 Identities=22% Similarity=0.254 Sum_probs=66.9
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+|+++||..+||+++|.|+.|..|++. .|.|+|+|.|+..+..+++ ++. .++.+++.+...++..
T Consensus 17 ~L~~~~gg~~VD~T~G~GGHS~~il~~-----------~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~ 81 (285)
T 1wg8_A 17 LLAVRPGGVYVDATLGGAGHARGILER-----------GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRH 81 (285)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHH
T ss_pred hhCCCCCCEEEEeCCCCcHHHHHHHHC-----------CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHH
Confidence 467899999999999999999999885 3899999999999998876 533 5788888887775431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
- . .....+||.||+|...|.
T Consensus 82 L--------------~--~~g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 82 L--------------A--ALGVERVDGILADLGVSS 101 (285)
T ss_dssp H--------------H--HTTCSCEEEEEEECSCCH
T ss_pred H--------------H--HcCCCCcCEEEeCCcccc
Confidence 0 0 011247999999998876
No 271
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.74 E-value=3.3e-05 Score=80.76 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=65.6
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
.+..+++.++ +|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++. ..++.++++|+..+
T Consensus 39 Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-----------~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~ 103 (271)
T 3fut_A 39 IVEAARPFTG-PVFEVGPGLGALTRALLEA-----------GAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHCCCCS-CEEEECCTTSHHHHHHHHT-----------TCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGS
T ss_pred HHHhcCCCCC-eEEEEeCchHHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhC
Confidence 3445678899 9999999999999999875 3689999999999999988764 35899999998875
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PC 186 (731)
+-- ....||+|+.+.|.
T Consensus 104 ~~~--------------------~~~~~~~iv~NlPy 120 (271)
T 3fut_A 104 PWE--------------------EVPQGSLLVANLPY 120 (271)
T ss_dssp CGG--------------------GSCTTEEEEEEECS
T ss_pred Chh--------------------hccCccEEEecCcc
Confidence 421 01258999999984
No 272
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=97.70 E-value=0.00016 Score=77.75 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=80.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~ 153 (731)
.+..+..+|||+++|+|..+..|++.. |.-.++..|. +.-+..++.++...+..++.+..+|...-|
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~---------p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~--- 241 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLY---------PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP--- 241 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHC---------SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC---
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhC---------CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC---
Confidence 356678899999999999999998873 4567788887 666666666554445678999888864311
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
...+|.|++ -.+...|.... -.+||+++.+.|+|||+|+.
T Consensus 242 --------------------~~~~D~~~~-------------~~vlh~~~d~~-------~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 242 --------------------LPEADLYIL-------------ARVLHDWADGK-------CSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp --------------------CCCCSEEEE-------------ESSGGGSCHHH-------HHHHHHHHHHHCCTTCEEEE
T ss_pred --------------------CCCceEEEe-------------eeecccCCHHH-------HHHHHHHHHhhCCCCCEEEE
Confidence 135798886 11334454322 25789999999999999998
Q ss_pred EeCCCCC
Q 004775 234 STCSMNP 240 (731)
Q Consensus 234 STCSl~p 240 (731)
.-.-+.+
T Consensus 282 ~e~~~~~ 288 (353)
T 4a6d_A 282 IESLLDE 288 (353)
T ss_dssp EECCCCT
T ss_pred EEeeeCC
Confidence 7665543
No 273
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.65 E-value=3.3e-05 Score=82.99 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=67.4
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
+|+++||..++|+|+|-|+.|..|++.++ +.|.|+|+|.|+..++.+. ++...++.+++.+...+...
T Consensus 52 ~L~i~pggiyVD~TlG~GGHS~~iL~~lg--------~~GrVig~D~Dp~Al~~A~----rL~~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 52 GLNIRPDGIYIDGTFGRGGHSRLILSQLG--------EEGRLLAIDRDPQAIAVAK----TIDDPRFSIIHGPFSALGEY 119 (347)
T ss_dssp HTCCCTTCEEEESCCTTSHHHHHHHTTCC--------TTCEEEEEESCHHHHHHHT----TCCCTTEEEEESCGGGHHHH
T ss_pred hhCCCCCCEEEEeCcCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHH----hhcCCcEEEEeCCHHHHHHH
Confidence 46789999999999999999999998764 4799999999999988762 44446788888777665321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG 188 (731)
- .... -..++|.||.|..||+
T Consensus 120 L--------------~~~g-~~~~vDgILfDLGVSS 140 (347)
T 3tka_A 120 V--------------AERD-LIGKIDGILLDLGVSS 140 (347)
T ss_dssp H--------------HHTT-CTTCEEEEEEECSCCH
T ss_pred H--------------HhcC-CCCcccEEEECCccCH
Confidence 1 0000 0126999999999986
No 274
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.62 E-value=0.00026 Score=73.02 Aligned_cols=100 Identities=15% Similarity=0.001 Sum_probs=71.8
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.+..+|||++||.|-.+..++ . ...++|.|+|...++.+.+++.++|. +..+...|...-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~---------~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~------ 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G---------IASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAP------ 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T---------CSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSC------
T ss_pred CCCCeEEEecCCccHHHHHhc---c---------CCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCC------
Confidence 567899999999998777654 2 58999999999999999999999884 5566666654321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
....||.||+- ....-|...|...+.+.++.|+++|.+|
T Consensus 165 ----------------~~~~~DvvLll---------------------k~lh~LE~q~~~~~~~ll~aL~~~~vvV 203 (253)
T 3frh_A 165 ----------------PAEAGDLALIF---------------------KLLPLLEREQAGSAMALLQSLNTPRMAV 203 (253)
T ss_dssp ----------------CCCBCSEEEEE---------------------SCHHHHHHHSTTHHHHHHHHCBCSEEEE
T ss_pred ----------------CCCCcchHHHH---------------------HHHHHhhhhchhhHHHHHHHhcCCCEEE
Confidence 12579999861 0112233444455558888999976655
No 275
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.57 E-value=9.7e-05 Score=77.09 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=74.4
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.+..+|||++||.|-.+..++.. .|...|+|+|+|...++.+.+++.++|+. ..+...|...
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~---------~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~-------- 192 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL---------PAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLE-------- 192 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC---------CTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTT--------
T ss_pred CCCceeeeeccCccHHHHHHHhh---------CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecc--------
Confidence 44679999999999877766432 25789999999999999999999999986 4555554332
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE-EEe
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YST 235 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV-YST 235 (731)
......||+||+- ....-|-..|...+.+.++.|++||.+| |=|
T Consensus 193 --------------~~p~~~~DvaL~l---------------------kti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 193 --------------DRLDEPADVTLLL---------------------KTLPCLETQQRGSGWEVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp --------------SCCCSCCSEEEET---------------------TCHHHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred --------------cCCCCCcchHHHH---------------------HHHHHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence 1123679999861 0111222333335558999999988776 334
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
-|+
T Consensus 238 ksl 240 (281)
T 3lcv_B 238 KSL 240 (281)
T ss_dssp C--
T ss_pred hhh
Confidence 444
No 276
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=97.55 E-value=0.00011 Score=77.38 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=66.2
Q ss_pred cCCCCCCEEEeecc------CcchHHHHHHHHhhcCCCCCCCCC-eEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 74 LDVQPDHFVLDMCA------APGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 74 Ld~~pg~~VLDmCA------APGsKT~qLae~l~~~~~~~~~p~-G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
|-+.-|++|||++| |||+. .+..+. |. |.|||+|+.+-- .... .++.+|.
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS~---VLr~~~--------p~g~~VVavDL~~~~-----------sda~-~~IqGD~ 161 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGTA---VLRQWL--------PTGTLLVDSDLNDFV-----------SDAD-STLIGDC 161 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHHH---HHHHHS--------CTTCEEEEEESSCCB-----------CSSS-EEEESCG
T ss_pred EeecCCCEEEeCCCCCCCCCCCcHH---HHHHhC--------CCCcEEEEeeCcccc-----------cCCC-eEEEccc
Confidence 34556999999997 99993 333333 34 599999984321 0122 3366664
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
..+ ....+||+||+|.-..-+|.. ..+ ..+...+-..+|.-|.+.|+
T Consensus 162 ~~~----------------------~~~~k~DLVISDMAPNtTG~~--D~d---------~~Rs~~L~ElALdfA~~~Lk 208 (344)
T 3r24_A 162 ATV----------------------HTANKWDLIISDMYDPRTKHV--TKE---------NDSKEGFFTYLCGFIKQKLA 208 (344)
T ss_dssp GGE----------------------EESSCEEEEEECCCCTTSCSS--CSC---------CCCCCTHHHHHHHHHHHHEE
T ss_pred ccc----------------------ccCCCCCEEEecCCCCcCCcc--ccc---------hhHHHHHHHHHHHHHHHhCc
Confidence 331 112679999999877777761 111 11112234456777888999
Q ss_pred CCCEEEEE
Q 004775 227 VGGRIVYS 234 (731)
Q Consensus 227 pGG~LVYS 234 (731)
+||.+|.=
T Consensus 209 pGGsFvVK 216 (344)
T 3r24_A 209 LGGSIAVK 216 (344)
T ss_dssp EEEEEEEE
T ss_pred CCCEEEEE
Confidence 99999854
No 277
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.52 E-value=0.00012 Score=76.87 Aligned_cols=118 Identities=13% Similarity=0.014 Sum_probs=76.1
Q ss_pred CCEEEeeccCc--chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 79 DHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 79 g~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
-.+|||++||. |+-+.++++.+. |...|+++|.|+..+...+.++...+..++.++..|...++.+.-
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~--------P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~-- 148 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVA--------PESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILD-- 148 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHC--------TTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHT--
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHC--------CCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhc--
Confidence 36999999997 556777777653 468999999999999988776643333468888998876421100
Q ss_pred CCCCCCcccccccccccccccc-----EEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 157 NFSSASDKGIESESNMGQLLFD-----RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FD-----rIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
.......|| .|++ .+++..-++. .....+|.+..+.|+|||+|
T Consensus 149 -------------~~~~~~~~D~~~p~av~~------~avLH~l~d~-------------~~p~~~l~~l~~~L~PGG~L 196 (277)
T 3giw_A 149 -------------APELRDTLDLTRPVALTV------IAIVHFVLDE-------------DDAVGIVRRLLEPLPSGSYL 196 (277)
T ss_dssp -------------CHHHHTTCCTTSCCEEEE------ESCGGGSCGG-------------GCHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccccccccCcCCcchHHh------hhhHhcCCch-------------hhHHHHHHHHHHhCCCCcEE
Confidence 000002233 3544 1233211110 11356899999999999999
Q ss_pred EEEeCCC
Q 004775 232 VYSTCSM 238 (731)
Q Consensus 232 VYSTCSl 238 (731)
+.|+-+-
T Consensus 197 vls~~~~ 203 (277)
T 3giw_A 197 AMSIGTA 203 (277)
T ss_dssp EEEEECC
T ss_pred EEEeccC
Confidence 9997654
No 278
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.49 E-value=0.00013 Score=75.01 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=54.0
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
..+++.++++|||+|||+|..|..|++. +.+.|+|+|+|+..+..+.++ +..++.+.++|+..++
T Consensus 25 ~~~~~~~~~~VLDiG~G~G~lt~~L~~~----------~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 25 EELNIEEGNTVVEVGGGTGNLTKVLLQH----------PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFP 89 (249)
T ss_dssp HHTTCCTTCEEEEEESCHHHHHHHHTTS----------CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCC
T ss_pred HhcCCCCcCEEEEEcCchHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCC
Confidence 4457788999999999999999988653 246999999999999988775 3467899999988764
No 279
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.48 E-value=0.00018 Score=75.49 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=56.8
Q ss_pred hhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
+..+++.++++|||+|||+|..|..|++.... ..+.|+|+|+|+..+..++++. ..++.++++|+..++
T Consensus 35 v~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~-------~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 35 VAAIRPERGERMVEIGPGLGALTGPVIARLAT-------PGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFD 103 (279)
T ss_dssp HHHHCCCTTCEEEEECCTTSTTHHHHHHHHCB-------TTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCC
T ss_pred HHhcCCCCcCEEEEEccccHHHHHHHHHhCCC-------cCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCC
Confidence 34567889999999999999999999987421 0256999999999999998873 468999999998765
No 280
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=97.47 E-value=0.0003 Score=76.04 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=72.3
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|... +.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~---- 259 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY---------PSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GV---- 259 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC----
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC---------CCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CC----
Confidence 5678999999999999999998874 3568999999 655433221 2578888887653 10
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
. .. |.|++-- +++.|.. ....++|+++.+.|||||+|+...
T Consensus 260 -----------------p-~~-D~v~~~~-------------vlh~~~~-------~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 260 -----------------P-KG-DAIFIKW-------------ICHDWSD-------EHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp -----------------C-CC-SEEEEES-------------CGGGBCH-------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -----------------C-CC-CEEEEec-------------hhhcCCH-------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 12 8888621 2233332 123578999999999999999887
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
..+.
T Consensus 301 ~~~~ 304 (368)
T 3reo_A 301 YILP 304 (368)
T ss_dssp CCCC
T ss_pred eccC
Confidence 6654
No 281
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=97.41 E-value=0.00026 Score=76.28 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=71.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|+.. +
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~----- 264 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY---------PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-S----- 264 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C-----
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC---------CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-C-----
Confidence 5678999999999999999998874 3568899999 665543322 2567777777643 1
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
. ..||.|++-- ++..|.. ....++|+++.+.|||||+|+.+.
T Consensus 265 ----------------~--~~~D~v~~~~-------------~lh~~~d-------~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 265 ----------------V--PQGDAMILKA-------------VCHNWSD-------EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp ----------------C--CCEEEEEEES-------------SGGGSCH-------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----------------C--CCCCEEEEec-------------ccccCCH-------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0 1289999721 1122221 123478999999999999999875
Q ss_pred CCC
Q 004775 236 CSM 238 (731)
Q Consensus 236 CSl 238 (731)
..+
T Consensus 307 ~~~ 309 (372)
T 1fp1_D 307 FIL 309 (372)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
No 282
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=97.33 E-value=0.0004 Score=74.22 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=72.5
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
+..++.+|||++||+|..+..+++.. |...++++|+ +..+..+++ .+++.+..+|+.. +
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~---- 243 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETF---------PKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-S---- 243 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-C----
T ss_pred ccccCceEEEeCCCccHHHHHHHHHC---------CCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-C----
Confidence 34578899999999999999998874 3568999999 766554332 2457777777533 1
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRI 231 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp---GG~L 231 (731)
. ..||.|++-- +...|.. ....++|+++.+.||| ||+|
T Consensus 244 -----------------~--p~~D~v~~~~-------------~lh~~~d-------~~~~~~l~~~~~~L~p~~~gG~l 284 (352)
T 1fp2_A 244 -----------------I--PNADAVLLKY-------------ILHNWTD-------KDCLRILKKCKEAVTNDGKRGKV 284 (352)
T ss_dssp -----------------C--CCCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHHHSGGGCCCEE
T ss_pred -----------------C--CCccEEEeeh-------------hhccCCH-------HHHHHHHHHHHHhCCCCCCCcEE
Confidence 0 1399999721 1222321 1234789999999999 9999
Q ss_pred EEEeCCCC
Q 004775 232 VYSTCSMN 239 (731)
Q Consensus 232 VYSTCSl~ 239 (731)
+.+.....
T Consensus 285 ~i~e~~~~ 292 (352)
T 1fp2_A 285 TIIDMVID 292 (352)
T ss_dssp EEEECEEC
T ss_pred EEEEeecC
Confidence 98765543
No 283
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=97.32 E-value=0.00079 Score=72.67 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=72.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||+|||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|+.. |.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~---- 257 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY---------PTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EV---- 257 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC----
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC---------CCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CC----
Confidence 6678999999999999999998874 3568899999 554432221 2578888887654 21
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
. .. |.|++-- +...|.. ..-.++|+++.+.|||||+|+...
T Consensus 258 -----------------p-~~-D~v~~~~-------------vlh~~~d-------~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 258 -----------------P-SG-DTILMKW-------------ILHDWSD-------QHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -----------------C-CC-SEEEEES-------------CGGGSCH-------HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -----------------C-CC-CEEEehH-------------HhccCCH-------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 12 8888611 2233332 223578999999999999999886
Q ss_pred CCCC
Q 004775 236 CSMN 239 (731)
Q Consensus 236 CSl~ 239 (731)
..+.
T Consensus 299 ~~~~ 302 (364)
T 3p9c_A 299 CILP 302 (364)
T ss_dssp CCBC
T ss_pred eccC
Confidence 6554
No 284
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.29 E-value=0.00018 Score=73.59 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=31.1
Q ss_pred CCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH
Q 004775 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (731)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~ 121 (731)
.++|+++|||++|||||+|..++...+ ...|+|+|+-.
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g---------~~~V~avdvG~ 112 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKK---------VTEVRGYTKGG 112 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTT---------EEEEEEECCCS
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcC---------CCEEEEEecCC
Confidence 357999999999999999988876533 35899999843
No 285
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=97.26 E-value=0.00033 Score=66.80 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=71.6
Q ss_pred hcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
-+.+++|++|||+++|.. ++|+++..++.++++.. .++.+...|+..++..
T Consensus 7 ~~g~~~g~~vL~~~~g~v-------------------------~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~ 57 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKSS-------------------------PVEALKGLVDKLQALTG----NEGRVSVENIKQLLQS 57 (176)
T ss_dssp TTTCCTTSEEEEEECTTS-------------------------CHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGG
T ss_pred ccCCCCCCEEEEecCCce-------------------------eeeCCHHHHHHHHHhcc----cCcEEEEechhcCccc
Confidence 356789999999998741 26778888877766532 2467777777664310
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
......||.|++-. ++. |-..+ ..++|+++.++|||||+++
T Consensus 58 ------------------~~~~~~fD~V~~~~------~l~--------~~~~~-------~~~~l~~~~r~LkpgG~l~ 98 (176)
T 2ld4_A 58 ------------------AHKESSFDIILSGL------VPG--------STTLH-------SAEILAEIARILRPGGCLF 98 (176)
T ss_dssp ------------------CCCSSCEEEEEECC------STT--------CCCCC-------CHHHHHHHHHHEEEEEEEE
T ss_pred ------------------cCCCCCEeEEEECC------hhh--------hcccC-------HHHHHHHHHHHCCCCEEEE
Confidence 01236899999721 111 10000 1468999999999999999
Q ss_pred EEeCCCCC------cCcHHHHHHHHHHCCC
Q 004775 233 YSTCSMNP------VENEAVVAEILRKCEG 256 (731)
Q Consensus 233 YSTCSl~p------~ENEaVV~~~L~~~~g 256 (731)
.+.-.... .-..+-+...|++.|-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 99 LKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred EEcccccccccccccCCHHHHHHHHHHCCC
Confidence 85321110 0124556677777764
No 286
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.25 E-value=0.00082 Score=71.09 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=81.6
Q ss_pred hhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEec
Q 004775 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----CTANLIVTNH 144 (731)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----g~~ni~vt~~ 144 (731)
+++++.+.| .+||=+|.|-|+.+..++..- +-..|+.+|+|+.-+++++.-+..+ .-+++.++..
T Consensus 76 ~~l~~~p~p-k~VLIiGgGdG~~~revlk~~---------~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~ 145 (294)
T 3o4f_A 76 VPLLAHGHA-KHVLIIGGGDGAMLREVTRHK---------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID 145 (294)
T ss_dssp HHHHHSSCC-CEEEEESCTTSHHHHHHHTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHhhCCCC-CeEEEECCCchHHHHHHHHcC---------CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence 455555544 589999999999777665431 2458999999999999988876442 2367999999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004775 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (731)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (731)
||..|-. ....+||+|++|.+- ..|. . ..| ......+.+.+.
T Consensus 146 Dg~~~l~--------------------~~~~~yDvIi~D~~d-p~~~-------------~--~~L--~t~eFy~~~~~~ 187 (294)
T 3o4f_A 146 DGVNFVN--------------------QTSQTFDVIISDCTD-PIGP-------------G--ESL--FTSAFYEGCKRC 187 (294)
T ss_dssp CTTTTTS--------------------CSSCCEEEEEESCCC-CCCT-------------T--CCS--SCCHHHHHHHHT
T ss_pred hHHHHHh--------------------hccccCCEEEEeCCC-cCCC-------------c--hhh--cCHHHHHHHHHH
Confidence 9988742 113689999999862 1121 0 111 123456677889
Q ss_pred ccCCCEEEEE
Q 004775 225 LKVGGRIVYS 234 (731)
Q Consensus 225 LKpGG~LVYS 234 (731)
|+|||.+|.-
T Consensus 188 L~p~Gv~v~q 197 (294)
T 3o4f_A 188 LNPGGIFVAQ 197 (294)
T ss_dssp EEEEEEEEEE
T ss_pred hCCCCEEEEe
Confidence 9999999863
No 287
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.10 E-value=0.00057 Score=78.30 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.+-+|||+|||.|-.|..||+. ...|+++|.++..+..++..+...|..++.+.+.++..+..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-----------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~------ 128 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-----------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIA------ 128 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHH------
T ss_pred CCCeEEEECCCCcHHHHHHHhC-----------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhh------
Confidence 4569999999999999998875 36899999999999999988887776678888887765421
Q ss_pred CCCCCccccccccccccccccEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLC 182 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~ 182 (731)
.....+||+|+|
T Consensus 129 -------------~~~~~~fD~v~~ 140 (569)
T 4azs_A 129 -------------ALEEGEFDLAIG 140 (569)
T ss_dssp -------------HCCTTSCSEEEE
T ss_pred -------------hccCCCccEEEE
Confidence 112368999997
No 288
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=97.03 E-value=0.0014 Score=70.22 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=70.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..++.+|||++||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|... +
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~----- 248 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIF---------PHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-S----- 248 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHC---------TTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-C-----
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHC---------CCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-C-----
Confidence 4567899999999999999998874 3468899998 554432221 2457777776543 1
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEEE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRIV 232 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp---GG~LV 232 (731)
. ..||.|++-- ++..|.. ....++|+++.+.||| ||+|+
T Consensus 249 ----------------~--~~~D~v~~~~-------------vlh~~~d-------~~~~~~l~~~~~~L~p~~~gG~l~ 290 (358)
T 1zg3_A 249 ----------------I--PSADAVLLKW-------------VLHDWND-------EQSLKILKNSKEAISHKGKDGKVI 290 (358)
T ss_dssp ----------------C--CCCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred ----------------C--CCceEEEEcc-------------cccCCCH-------HHHHHHHHHHHHhCCCCCCCcEEE
Confidence 0 2499999721 1222321 1234789999999999 99999
Q ss_pred EEeCCC
Q 004775 233 YSTCSM 238 (731)
Q Consensus 233 YSTCSl 238 (731)
.....+
T Consensus 291 i~e~~~ 296 (358)
T 1zg3_A 291 IIDISI 296 (358)
T ss_dssp EEECEE
T ss_pred EEEecc
Confidence 876554
No 289
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.02 E-value=0.0016 Score=71.19 Aligned_cols=143 Identities=16% Similarity=0.127 Sum_probs=86.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----C---CCceEEEecccccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----C---TANLIVTNHEAQHF 149 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-----g---~~ni~vt~~Da~~f 149 (731)
+..+||=++.|-|+-...++.. +...|+.+|+|+.-++++++-+..+ . .+++.++..||..|
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh----------~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f 274 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL----------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV 274 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT----------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc----------CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH
Confidence 4579999999999977666542 2468999999999998887754221 1 13478888888765
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
-.- ......+||+|++|++-...++ .|. .....-...+.+..+.+.|++||
T Consensus 275 l~~-----------------~~~~~~~yDvIIvDl~D~~~s~---~p~---------g~a~~Lft~eFy~~~~~~L~p~G 325 (381)
T 3c6k_A 275 LKR-----------------YAKEGREFDYVINDLTAVPIST---SPE---------EDSTWEFLRLILDLSMKVLKQDG 325 (381)
T ss_dssp HHH-----------------HHHHTCCEEEEEEECCSSCCCC---C-------------CHHHHHHHHHHHHHHTEEEEE
T ss_pred HHh-----------------hhhccCceeEEEECCCCCcccC---ccc---------CcchHHHHHHHHHHHHHhcCCCC
Confidence 210 0112357999999976211111 000 11122345678888999999999
Q ss_pred EEEE-EeCCCCCcCcHHHHHHHHHHCCCcEEE
Q 004775 230 RIVY-STCSMNPVENEAVVAEILRKCEGSVEL 260 (731)
Q Consensus 230 ~LVY-STCSl~p~ENEaVV~~~L~~~~g~~el 260 (731)
.+|. +.|-..+ +.-..+.+.|++.-..+..
T Consensus 326 Vlv~Q~~s~~~~-~~~~~i~~tl~~vF~~v~~ 356 (381)
T 3c6k_A 326 KYFTQGNCVNLT-EALSLYEEQLGRLYCPVEF 356 (381)
T ss_dssp EEEEEEEETTCH-HHHHHHHHHHTTSSSCEEE
T ss_pred EEEEecCCCcch-hHHHHHHHHHHHhCCcceE
Confidence 9885 4444332 2223344455544334443
No 290
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=96.98 E-value=0.00028 Score=72.82 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=51.8
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp 150 (731)
..+++.++++|||+|||+|..|. ++ .. +.+.|+|+|+|+..+..+++++... +++.++++|+..++
T Consensus 15 ~~~~~~~~~~VLEIG~G~G~lt~-l~-~~---------~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 15 SAINPQKGQAMVEIGPGLAALTE-PV-GE---------RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHCCCTTCCEEEECCTTTTTHH-HH-HT---------TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCC
T ss_pred HhcCCCCcCEEEEECCCCcHHHH-hh-hC---------CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCC
Confidence 34577899999999999999999 53 21 1234999999999999988766432 58999999987754
No 291
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.97 E-value=0.0024 Score=67.12 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=95.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH--------------------------HHHHHHHHHHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV--------------------------QRCNLLIHQTK 132 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~--------------------------~R~~~L~~n~k 132 (731)
...||.++++-|.-++.+++.+.... .+.+.|+++|... .+...++++++
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g----~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~ 182 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHD----VRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR 182 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTT----CCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcC----CCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence 44999999999999999998875310 1257899999631 15677889999
Q ss_pred HcCC--CceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004775 133 RMCT--ANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (731)
Q Consensus 133 Rlg~--~ni~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~ 209 (731)
+.|. .++.++.+++.. +|. ....+||.|.+|+-
T Consensus 183 ~~gl~~~~I~li~Gda~etL~~--------------------~~~~~~d~vfIDaD------------------------ 218 (282)
T 2wk1_A 183 NYDLLDEQVRFLPGWFKDTLPT--------------------APIDTLAVLRMDGD------------------------ 218 (282)
T ss_dssp HTTCCSTTEEEEESCHHHHSTT--------------------CCCCCEEEEEECCC------------------------
T ss_pred HcCCCcCceEEEEeCHHHHHhh--------------------CCCCCEEEEEEcCC------------------------
Confidence 9997 679999998865 221 11257999999973
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 210 LHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
...-....|.....+|++||.||.=-....+.+. .-|.+++++.+-.+.+..+
T Consensus 219 ~y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~-~Av~Ef~~~~~i~~~i~~~ 271 (282)
T 2wk1_A 219 LYESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCK-DAVDEYRAKFDIADELITI 271 (282)
T ss_dssp SHHHHHHHHHHHGGGEEEEEEEEESSCTTCHHHH-HHHHHHHHHTTCCSCCEEC
T ss_pred ccccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHH-HHHHHHHHhcCCceEEEEe
Confidence 1112245688899999999999975543345443 4457777777655555444
No 292
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.90 E-value=0.0017 Score=68.51 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=30.7
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHH
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~ 122 (731)
++|+..|||++|||||+|..++...+ ...|+|+|+-..
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~g---------v~~V~avdvG~~ 129 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKR---------VQEVRGYTKGGP 129 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTT---------EEEEEEECCCST
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcC---------CCEEEEEEcCCC
Confidence 57899999999999999987766532 358999998443
No 293
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=96.83 E-value=0.0039 Score=67.98 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=58.8
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
.+|||+|||.|+.+.-+..+ +--.|.|+|+++..++.+++|. ++..+.+.|...+..-.+.
T Consensus 3 ~~vidLFsG~GGlslG~~~a----------G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~---- 63 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA----------GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIK---- 63 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH----------TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHH----
T ss_pred CeEEEEccCcCHHHHHHHHC----------CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHH----
Confidence 58999999999999887654 1346889999999999888763 3456667777664321000
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCcccc
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk 194 (731)
........+|.|+.++||-+.-...+
T Consensus 64 ---------~~~~~~~~~D~i~ggpPCQ~fS~ag~ 89 (376)
T 3g7u_A 64 ---------GFFKNDMPIDGIIGGPPCQGFSSIGK 89 (376)
T ss_dssp ---------HHHCSCCCCCEEEECCCCCTTC----
T ss_pred ---------hhcccCCCeeEEEecCCCCCcccccC
Confidence 00001257999999999988765543
No 294
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=96.77 E-value=0.003 Score=73.32 Aligned_cols=123 Identities=11% Similarity=0.123 Sum_probs=81.2
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~~~~~~ 158 (731)
..|||+|||.|-.....+.+.... ...-+|+|+|.++. +..+.+..+.++.. .|.|+++|...+.
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~-----~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~-------- 424 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQA-----DRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWV-------- 424 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHT-----TCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCC--------
T ss_pred cEEEEECCCCcHHHHHHHHHHHhc-----CCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceecc--------
Confidence 479999999998743333332211 01247999999985 44555566777764 5889999887742
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC-
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS- 237 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS- 237 (731)
-+.++|+|++..= |.+ .+...-..+|..+-++|||||.++=+.|+
T Consensus 425 --------------LPEKVDIIVSEwM----G~f----------------Ll~E~mlevL~Ardr~LKPgGimiPs~atl 470 (637)
T 4gqb_A 425 --------------APEKADIIVSELL----GSF----------------ADNELSPECLDGAQHFLKDDGVSIPGEYTS 470 (637)
T ss_dssp --------------CSSCEEEEECCCC----BTT----------------BGGGCHHHHHHHHGGGEEEEEEEESCEEEE
T ss_pred --------------CCcccCEEEEEcC----ccc----------------ccccCCHHHHHHHHHhcCCCcEEccccceE
Confidence 1268999997442 211 11222246788888999999999966666
Q ss_pred -CCCcCcHHHHHHH
Q 004775 238 -MNPVENEAVVAEI 250 (731)
Q Consensus 238 -l~p~ENEaVV~~~ 250 (731)
+.|++.+..-.+.
T Consensus 471 yiapi~~~~l~~e~ 484 (637)
T 4gqb_A 471 FLAPISSSKLYNEV 484 (637)
T ss_dssp EEEEEECHHHHHHH
T ss_pred EEEEecCHHHHHHH
Confidence 4588887765554
No 295
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.72 E-value=0.0019 Score=75.37 Aligned_cols=136 Identities=11% Similarity=0.084 Sum_probs=87.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCC---CC-CCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQST---NP-GALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCR 153 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~---~~-~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~-ni~vt~~Da~~fp~~~ 153 (731)
+..|||+|||.|-.+..++.+..... .. ......+|+|+|.++.....|+.... .+.. .|.++..|...+..-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp- 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI- 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc-
Confidence 34899999999998654433322100 00 00014599999999988777766554 5654 488999988774210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
. ......++|.|++.-- |. ..+..+..+.|..+-++|||||.++=
T Consensus 488 ~---------------~~~~~ekVDIIVSElm----Gs----------------fl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 488 A---------------KDRGFEQPDIIVSELL----GS----------------FGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp H---------------HHTTCCCCSEEEECCC----BT----------------TBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred c---------------ccCCCCcccEEEEecc----cc----------------ccchhccHHHHHHHHHhCCCCcEEEC
Confidence 0 0011368999997443 21 12344566778888899999999995
Q ss_pred EeCC--CCCcCcHHHHHHHH
Q 004775 234 STCS--MNPVENEAVVAEIL 251 (731)
Q Consensus 234 STCS--l~p~ENEaVV~~~L 251 (731)
+.|+ +.|++.+..-..+.
T Consensus 533 ~~~t~ylaPi~~~~l~~~v~ 552 (745)
T 3ua3_A 533 QKYTSYVKPIMSTHIHQTIK 552 (745)
T ss_dssp CEEEEEEEEEECHHHHHHHH
T ss_pred CccEEEEEEecCHHHHHHHH
Confidence 5555 66899988755543
No 296
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=96.70 E-value=0.0032 Score=67.40 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=57.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
+.+|||+|||.|+.+..+..+ +--.|+|+|+|+..++.+++|.... . +.|...+..-
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a----------G~~~v~~~e~d~~a~~t~~~N~~~~-----~--~~Di~~~~~~------ 67 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC----------GAECVYSNEWDKYAQEVYEMNFGEK-----P--EGDITQVNEK------ 67 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT----------TCEEEEEECCCHHHHHHHHHHHSCC-----C--BSCGGGSCGG------
T ss_pred CCcEEEECCCcCHHHHHHHHC----------CCeEEEEEeCCHHHHHHHHHHcCCC-----C--cCCHHHcCHh------
Confidence 569999999999998877543 1357899999999999999886321 1 4555543210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCcccc
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk 194 (731)
....+|.|+.++||-+--...+
T Consensus 68 --------------~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 68 --------------TIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp --------------GSCCCSEEEEECCCTTTCTTSC
T ss_pred --------------hCCCCCEEEECCCCCCcchhcc
Confidence 1135899999999988766544
No 297
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=96.61 E-value=0.0018 Score=69.69 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=52.8
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
.+|||+|||.|+.+..+..+ +- .-..|+|+|+++..++.+++|.. +..+.+.|...+..-
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~-------~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~------- 62 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CI-------PAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLE------- 62 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TC-------SEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHH-------
T ss_pred CeEEEeCcCccHHHHHHHHC-CC-------CceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHh-------
Confidence 48999999999999887654 10 01379999999999999888753 333556666654210
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccc
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlr 193 (731)
......+|.|+.++||-+.....
T Consensus 63 -----------~~~~~~~D~l~~gpPCq~fS~ag 85 (343)
T 1g55_A 63 -----------EFDRLSFDMILMSPPCQPFTRIG 85 (343)
T ss_dssp -----------HHHHHCCSEEEECCC--------
T ss_pred -----------HcCcCCcCEEEEcCCCcchhhcC
Confidence 01112699999999998877654
No 298
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=96.59 E-value=0.00083 Score=70.61 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=79.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
+..|||++||+|..+..++. . ...++.+|.++..+..|++|++. ..++.|.+.|+..+...
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS---~--------~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~------ 152 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR---S--------QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNA------ 152 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC---T--------TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHH------
T ss_pred CCCceeEeCCcHHHHHHHcC---C--------CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHH------
Confidence 56799999999997776543 2 36899999999999999999864 35688888887553110
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
......+||.||+|||.--.+. ...-.+.|..+. .+.++|+++. +
T Consensus 153 -----------l~~~~~~fdLVfiDPPYe~k~~-------------------~~~vl~~L~~~~-~r~~~Gi~v~----W 197 (283)
T 2oo3_A 153 -----------LLPPPEKRGLIFIDPSYERKEE-------------------YKEIPYAIKNAY-SKFSTGLYCV----W 197 (283)
T ss_dssp -----------HCSCTTSCEEEEECCCCCSTTH-------------------HHHHHHHHHHHH-HHCTTSEEEE----E
T ss_pred -----------hcCCCCCccEEEECCCCCCCcH-------------------HHHHHHHHHHhC-ccCCCeEEEE----E
Confidence 0011246999999999532111 011122333333 4567787764 3
Q ss_pred CCcCcHHHHHHHHHH
Q 004775 239 NPVENEAVVAEILRK 253 (731)
Q Consensus 239 ~p~ENEaVV~~~L~~ 253 (731)
.|+-+..-+..++++
T Consensus 198 YPi~~~~~~~~~~~~ 212 (283)
T 2oo3_A 198 YPVVNKAWTEQFLRK 212 (283)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EeccchHHHHHHHHH
Confidence 566677667777664
No 299
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.38 E-value=0.015 Score=61.92 Aligned_cols=130 Identities=17% Similarity=0.116 Sum_probs=79.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCe--EEEEEeCCHHH--------HHHHHHH-HHHc---CCCc--eEE
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNG--MVIANDLDVQR--------CNLLIHQ-TKRM---CTAN--LIV 141 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G--~VvAnDid~~R--------~~~L~~n-~kRl---g~~n--i~v 141 (731)
+.-+|||+|=|.|--++..+..+... .|.. ..+++|.++-+ ...+.+. ..+. ...+ +.+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~-----~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l 170 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEV-----NPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKV 170 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHH-----CTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEE
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHh-----CCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEE
Confidence 34589999999998655444332211 1233 45777753211 1111111 1222 1122 344
Q ss_pred Eeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004775 142 TNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (731)
Q Consensus 142 t~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (731)
..+|+.. ++. .....||.|++|+= .-++||++|.. .++..
T Consensus 171 ~~GDa~~~l~~--------------------l~~~~~Da~flDgF-----sP~kNPeLWs~--------------e~f~~ 211 (308)
T 3vyw_A 171 LLGDARKRIKE--------------------VENFKADAVFHDAF-----SPYKNPELWTL--------------DFLSL 211 (308)
T ss_dssp EESCHHHHGGG--------------------CCSCCEEEEEECCS-----CTTTSGGGGSH--------------HHHHH
T ss_pred EechHHHHHhh--------------------hcccceeEEEeCCC-----CcccCcccCCH--------------HHHHH
Confidence 5566654 221 11247999999971 12789999863 68999
Q ss_pred HHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcE
Q 004775 221 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSV 258 (731)
Q Consensus 221 Al~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~ 258 (731)
..++++|||+++--||+ ..|...|...|-.|
T Consensus 212 l~~~~~pgg~laTYtaa-------g~VRR~L~~aGF~V 242 (308)
T 3vyw_A 212 IKERIDEKGYWVSYSSS-------LSVRKSLLTLGFKV 242 (308)
T ss_dssp HHTTEEEEEEEEESCCC-------HHHHHHHHHTTCEE
T ss_pred HHHHhCCCcEEEEEeCc-------HHHHHHHHHCCCEE
Confidence 99999999999855555 68999999988544
No 300
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.57 E-value=0.022 Score=59.58 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
.+|+.|||.+||+|+.+..++.+ ...++++|+++..+..+++++++..
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~-----------g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW-----------GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-----------CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 68999999999999976665442 3589999999999999999988753
No 301
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=95.23 E-value=0.027 Score=59.41 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCe-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNG-MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G-~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
....+|||+|||.||.+.-+..+ +- .- .|+|+|+|+..+..+..|. +...+...|...+..-.+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~--------~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i- 78 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GI--------QVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHI- 78 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TB--------CEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHH-
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CC--------ccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHh-
Confidence 45679999999999988776442 11 11 2799999999998887763 334566777766532110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
.....+|+|+..+||-+--..
T Consensus 79 ----------------~~~~~~Dll~ggpPCQ~fS~a 99 (295)
T 2qrv_A 79 ----------------QEWGPFDLVIGGSPCNDLSIV 99 (295)
T ss_dssp ----------------HHTCCCSEEEECCCCGGGBTT
T ss_pred ----------------cccCCcCEEEecCCCcccccc
Confidence 011469999999999876443
No 302
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=94.98 E-value=0.024 Score=60.79 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
.+|+|+|||.|+.+.-+..+ +- ..-.|.|+|+|+..++...+|.. ...+.+.|...+..-
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~-------~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~------- 63 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GL-------DGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQ------- 63 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TC-------SEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHH-------
T ss_pred CEEEEECcCccHHHHHHHHc-CC-------CceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHH-------
Confidence 37999999999998877543 10 01358899999999998887642 223455666554211
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
......+|.|+..+||-+--..
T Consensus 64 -----------~~~~~~~D~l~ggpPCQ~fS~a 85 (333)
T 4h0n_A 64 -----------VIKKWNVDTILMSPPCQPFTRN 85 (333)
T ss_dssp -----------HHHHTTCCEEEECCCCCCSEET
T ss_pred -----------HhccCCCCEEEecCCCcchhhh
Confidence 1111369999999999876543
No 303
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=94.75 E-value=0.047 Score=57.49 Aligned_cols=77 Identities=8% Similarity=0.058 Sum_probs=55.3
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~~ 159 (731)
++|||++||.||.+.-+-++ + =-.|.|+|+|+..++..++|. +. .+...|...+..-
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G---------~~~v~a~e~d~~a~~ty~~N~-----~~-~~~~~DI~~i~~~------- 57 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G---------FRIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSD------- 57 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T---------CEEEEEEECCTTTHHHHHHHC-----CS-EEEESCGGGCCGG-------
T ss_pred CeEEEeCcCccHHHHHHHHC-C---------CEEEEEEeCCHHHHHHHHHHC-----CC-CcccCChhhCCHh-------
Confidence 47999999999988776332 1 236889999999999988763 22 4456776654321
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
....+|+|+.-+||-+.=+.
T Consensus 58 -------------~~~~~D~l~ggpPCQ~fS~a 77 (331)
T 3ubt_Y 58 -------------EFPKCDGIIGGPPSQSWSEG 77 (331)
T ss_dssp -------------GSCCCSEEECCCCGGGTEET
T ss_pred -------------hCCcccEEEecCCCCCcCCC
Confidence 12468999999999886544
No 304
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=94.74 E-value=0.075 Score=56.35 Aligned_cols=92 Identities=11% Similarity=-0.001 Sum_probs=63.4
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
..+++|++||-.+||+ |..++|+|..++ ..|++.|.++.|.+.+ +.+|...+. .+...+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~----~~lGa~~v~---~~~~~~--- 231 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMG----------AEVSVFARNEHKKQDA----LSMGVKHFY---TDPKQC--- 231 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTT----------CEEEEECSSSTTHHHH----HHTTCSEEE---SSGGGC---
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHH----HhcCCCeec---CCHHHH---
Confidence 3689999999998866 666777776642 4799999999998866 457866443 222111
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...||.|+- |+|.. ..+..++++|++||++|
T Consensus 232 ---------------------~~~~D~vid---~~g~~-------------------------~~~~~~~~~l~~~G~iv 262 (348)
T 3two_A 232 ---------------------KEELDFIIS---TIPTH-------------------------YDLKDYLKLLTYNGDLA 262 (348)
T ss_dssp ---------------------CSCEEEEEE---CCCSC-------------------------CCHHHHHTTEEEEEEEE
T ss_pred ---------------------hcCCCEEEE---CCCcH-------------------------HHHHHHHHHHhcCCEEE
Confidence 026899874 44432 12556889999999998
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
..
T Consensus 263 ~~ 264 (348)
T 3two_A 263 LV 264 (348)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 305
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=94.72 E-value=0.098 Score=57.00 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=75.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcC----C--CCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-------------CCce
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQS----T--NPGALPNGMVIANDLDVQRCNLLIHQTKRMC-------------TANL 139 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~----~--~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-------------~~ni 139 (731)
..+|+|++||+|.-|+.++..+-.. . .....|.-.|+.||+-..-...|-..+.... ...+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 6899999999999999986544220 0 0011357889999986666555544432210 0111
Q ss_pred EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh-----cccccc-------
Q 004775 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK-----WNVGLG------- 207 (731)
Q Consensus 140 ~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~-----w~~~~~------- 207 (731)
++.+.+..|= ...++..+||.|++ +....-+.+.|..... |+.+..
T Consensus 133 -f~~gvpgSFy------------------~rlfP~~S~d~v~S---s~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~ 190 (374)
T 3b5i_A 133 -FVAGVPGSFY------------------RRLFPARTIDFFHS---AFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGE 190 (374)
T ss_dssp -EEEEEESCTT------------------SCCSCTTCEEEEEE---ESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCH
T ss_pred -EEEecChhhh------------------cccCCCcceEEEEe---cceeeeeccCchhhhccccccccCCceEeCCCCH
Confidence 1222222110 11234578999986 2333333444432211 222211
Q ss_pred --c-----chHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 208 --N-----GLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 208 --~-----~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
. .....-..+|+.-.+-|+|||+||.++..-
T Consensus 191 ~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 191 KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 1 112223456888889999999999997754
No 306
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=94.71 E-value=0.21 Score=54.57 Aligned_cols=42 Identities=29% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhc----CCC----CCCCCCeEEEEEeCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQ----STN----PGALPNGMVIANDLD 120 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~----~~~----~~~~p~G~VvAnDid 120 (731)
..+|+|++|+.|.-|+.++..+-. ... ....|.-.|+.||+-
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 479999999999999988776321 100 001367899999986
No 307
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=94.61 E-value=0.081 Score=58.08 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=55.0
Q ss_pred hhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc---CC-CceEEEecccc
Q 004775 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM---CT-ANLIVTNHEAQ 147 (731)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl---g~-~ni~vt~~Da~ 147 (731)
.++.+++++.|+|++|.-|..|..++..+.. +.+.|+|+|.++.-+..|++|++.+ +. .++.+.+..+.
T Consensus 220 ~i~~l~~~~~viDvGAn~G~~s~~~a~~~~~-------~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 220 GLLRFSDSEKMVDCGASIGESLAGLIGVTKG-------KFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp SSCCCCSSCEEEEETCTTSHHHHHHHHHHTS-------CCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred cccccCCCCEEEECCCCcCHHHHHHHHHhcC-------CCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 3456789999999999999999988844332 1489999999999999999999882 35 78877765443
No 308
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=94.52 E-value=0.077 Score=56.78 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+++++|++||-.+||+ |..++|+|..++ ...|+++|.+..|+++++ .+|..
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~ 237 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCG---------ASIIIAVDIVESRLELAK----QLGAT 237 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHH----HcCCC
Confidence 4689999999999877 677888887753 247999999999988764 46754
No 309
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=94.49 E-value=0.073 Score=57.19 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=39.9
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
...+++|++||=.+||+ |..++|+|..++ ...|++.|.++.|.++++ .+|...
T Consensus 177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~~ 230 (370)
T 4ej6_A 177 LSGIKAGSTVAILGGGVIGLLTVQLARLAG---------ATTVILSTRQATKRRLAE----EVGATA 230 (370)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCHHHHHHHH----HHTCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HcCCCE
Confidence 34789999999998866 666777777643 248999999999987654 467653
No 310
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=94.38 E-value=0.086 Score=55.64 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=40.3
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||-.+||+ |..++|+|..++ ..|++.|.+..|++.+ +++|...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~----~~lGa~~ 213 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMG----------LRVAAVDIDDAKLNLA----RRLGAEV 213 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTT----------CEEEEEESCHHHHHHH----HHTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHH----HHcCCCE
Confidence 3678999999999876 777888887653 4899999999998865 4577653
No 311
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=94.37 E-value=0.044 Score=56.20 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=38.5
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
..+|+.|||.+||+|+.+..+ ..+ ...++++|+++..+..++.+++.++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a-~~~----------gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVA-KKL----------GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHH-HHT----------TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCCEEEECCCCCCHHHHHH-HHc----------CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 378999999999999865544 333 2589999999999999999887554
No 312
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=94.36 E-value=0.092 Score=55.92 Aligned_cols=53 Identities=23% Similarity=0.187 Sum_probs=40.2
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.+.+++|++||-.+||+ |..++|+|..++ ...|++.|.+..|+++++ .+|...
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~~ 219 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMG---------AAQVVVTDLSATRLSKAK----EIGADL 219 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HhCCCE
Confidence 34789999999999876 666777777643 248999999999987663 577653
No 313
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=94.34 E-value=0.033 Score=59.59 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=53.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEE-EEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMV-IANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~V-vAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
..+|+|+|||.|+.+.-+..+ + ...-.| .|+|+|+..++...+|.. .. +.+.|...+..-
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G-------~~~~~v~~a~e~d~~a~~ty~~N~~-----~~-~~~~DI~~~~~~----- 70 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-S-------ININATFIPFDINEIANKIYSKNFK-----EE-VQVKNLDSISIK----- 70 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-S-------CCCCEEEEEECCCHHHHHHHHHHHC-----CC-CBCCCTTTCCHH-----
T ss_pred CCEEEEECCChhHHHHHHHHc-C-------CCceEEEEEEECCHHHHHHHHHHCC-----CC-cccCChhhcCHH-----
Confidence 458999999999988776442 1 001256 799999999999988752 11 334555543210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd 189 (731)
......+|.|+..+||-+-
T Consensus 71 -------------~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 71 -------------QIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp -------------HHHHTCCCEEEECCCCTTC
T ss_pred -------------HhccCCCCEEEecCCccCc
Confidence 1111369999999999987
No 314
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=94.15 E-value=0.067 Score=57.87 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=50.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
+++.||+++.|+|..|..|++... ...|+|+|+|..-+..|.+.. ...++.+++.|+..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~---------~~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC---------PRQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC---------CSEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC---------CCEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccch
Confidence 469999999999999999998642 258999999999988887765 246899999998654
No 315
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=93.98 E-value=0.16 Score=59.04 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=83.7
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcC--CCCC-CCCCeEEEEEeCCHHHHHHHHHHH-------------H-HcC--CC
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQS--TNPG-ALPNGMVIANDLDVQRCNLLIHQT-------------K-RMC--TA 137 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~--~~~~-~~p~G~VvAnDid~~R~~~L~~n~-------------k-Rlg--~~ 137 (731)
++.-+|||+|-|.|--++.+.+..... .++. ....-.++++|..+-....|.+-+ . ... .+
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 355699999999999888887765210 0000 011357899999664444444321 1 110 01
Q ss_pred ------------ceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004775 138 ------------NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (731)
Q Consensus 138 ------------ni~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~ 204 (731)
.+.+..+|+... +.+. ......||.|++|+.. -.|||++|..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~-----------------~~~~~~~da~flD~f~-----p~~np~~w~~--- 191 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLD-----------------DSLNNQVDAWFLDGFA-----PAKNPDMWNE--- 191 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCC-----------------GGGTTCEEEEEECSSC-----C--CCTTCSH---
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcc-----------------cccCCceeEEEECCCC-----CCCChhhhhH---
Confidence 233344455431 1100 0012579999999842 2589998753
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEE
Q 004775 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVEL 260 (731)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~el 260 (731)
.++....+++++||++..-||. ..|...|.+.|..+.-
T Consensus 192 -----------~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~l~~aGf~~~~ 229 (689)
T 3pvc_A 192 -----------QLFNAMARMTRPGGTFSTFTAA-------GFVRRGLQQAGFNVTK 229 (689)
T ss_dssp -----------HHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHTTCEEEE
T ss_pred -----------HHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhCCeEEEe
Confidence 5677778899999998766665 4778888888754433
No 316
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=93.95 E-value=0.17 Score=54.67 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=40.4
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
+++++|++||-.+||+ |..++|+|..++ .+.|+++|.+..|++.++ .+|.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa 231 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG---------AACVIVGDQNPERLKLLS----DAGF 231 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHH----TTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HcCC
Confidence 4789999999999877 777888888753 248999999999987653 4675
No 317
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=93.84 E-value=0.11 Score=55.02 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=40.4
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.+++|++||=.+||+ |..++|+|..++ ...|+++|.+..|++++ +.+|...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g---------~~~Vi~~~~~~~~~~~~----~~lGa~~ 219 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS---------AARVIAVDLDDDRLALA----REVGADA 219 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC---------CCEEEEEESCHHHHHHH----HHTTCSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHH----HHcCCCE
Confidence 678999999998876 667788877653 35899999999999876 4577654
No 318
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=93.76 E-value=0.077 Score=56.35 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=63.9
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~ 152 (731)
..+++|++||=.+||+ |..++|+|..++ ...|+++|.+..|+++++ ++|... +++.....+...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~ 226 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG---------AGRIFAVGSRKHCCDIAL----EYGATD--IINYKNGDIVEQ 226 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTT---------CSSEEEECCCHHHHHHHH----HHTCCE--EECGGGSCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHHH----HhCCce--EEcCCCcCHHHH
Confidence 4789999999998765 556666666532 247999999999987664 467643 233222111100
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
+ . .......||.|+- |+|.. ..+..++++|++||++|
T Consensus 227 -v-------------~-~~t~g~g~D~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v 263 (352)
T 3fpc_A 227 -I-------------L-KATDGKGVDKVVI---AGGDV-------------------------HTFAQAVKMIKPGSDIG 263 (352)
T ss_dssp -H-------------H-HHTTTCCEEEEEE---CSSCT-------------------------THHHHHHHHEEEEEEEE
T ss_pred -H-------------H-HHcCCCCCCEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEE
Confidence 0 0 0011236999984 44432 13667889999999988
Q ss_pred EE
Q 004775 233 YS 234 (731)
Q Consensus 233 YS 234 (731)
..
T Consensus 264 ~~ 265 (352)
T 3fpc_A 264 NV 265 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 319
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=93.59 E-value=0.086 Score=56.63 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=39.7
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|++||=++||+ |..++|+|..++ ...|+++|.++.|++++ +++|...
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~G---------a~~Vi~~~~~~~~~~~a----~~lGa~~ 241 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAG---------ASRIIGIDIDSKKYETA----KKFGVNE 241 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHT---------CSCEEEECSCTTHHHHH----HTTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHH----HHcCCcE
Confidence 4688999999998865 666777777653 24799999999998865 4577653
No 320
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=93.36 E-value=0.27 Score=51.69 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=38.4
Q ss_pred cCCCCCCEEEeeccCcch-HHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+||+.+ .++|+|..++ ...|+++|.+++|++++ +++|...
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G---------~~~vi~~~~~~~k~~~a----~~lGa~~ 208 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALG---------AKSVTAIDISSEKLALA----KSFGAMQ 208 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHH----HHTTCSE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcC---------CcEEEEEechHHHHHHH----HHcCCeE
Confidence 467899999999887644 4566666543 35789999999998765 4578653
No 321
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=93.30 E-value=0.21 Score=52.92 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=37.9
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||-.+||+ |..++|+|..++ ..|++.|.+..|++.++ .+|..
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~----~lGa~ 214 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG----------AFVVCTARSPRRLEVAK----NCGAD 214 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHH----HhCCC
Confidence 4789999999999765 556677766542 35999999999988764 56765
No 322
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=93.30 E-value=0.1 Score=56.41 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=39.3
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
+.+++|++||-++||+ |..++|+|..++ ...|++.|.+..|+++++ .+|.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G---------a~~Vi~~~~~~~~~~~a~----~lGa 231 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLG---------AAVVIVGDLNPARLAHAK----AQGF 231 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHH----HTTC
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC---------CCeEEEEcCCHHHHHHHH----HcCC
Confidence 4789999999999876 667777777653 247999999999988764 5776
No 323
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=93.25 E-value=0.15 Score=54.56 Aligned_cols=51 Identities=8% Similarity=-0.011 Sum_probs=38.4
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+||+ |..++|+|..++ ..|++.|.+..|++.+ +++|...
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~----~~lGa~~ 236 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG----------AEVIVTSSSREKLDRA----FALGADH 236 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHH----HHHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEecCchhHHHH----HHcCCCE
Confidence 4688999999998766 556667766542 4899999999998875 4467653
No 324
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=93.13 E-value=0.17 Score=54.14 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=39.6
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+||+ |..++|+|..++ ...|++.|.+..|++.++ ++|...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~~ 239 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG---------ASRIIGVGTHKDKFPKAI----ELGATE 239 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHH----HcCCcE
Confidence 4688999999999765 666777777653 247999999999988654 577653
No 325
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.05 E-value=0.18 Score=48.15 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCCCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCe-EEEEEeCCHHHHH
Q 004775 77 QPDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNG-MVIANDLDVQRCN 125 (731)
Q Consensus 77 ~pg~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G-~VvAnDid~~R~~ 125 (731)
.++.+||++|||+| .-+..|++. .| .|+|+|+++..+.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-----------~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-----------SKVDLVLTDIKPSHGG 73 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-----------SCCEEEEECSSCSSTT
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-----------CCCeEEEEECCccccc
Confidence 45789999999999 467777654 24 5999999888765
No 326
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=92.98 E-value=0.16 Score=54.34 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=38.2
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.++.|++.++ ++|..
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~ 239 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG---------AKRIIAVDLNPDKFEKAK----VFGAT 239 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHH----HTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4688999999998765 556667766642 237999999999988654 56764
No 327
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=92.96 E-value=0.17 Score=54.06 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=38.4
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.++.|++.+ +++|..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~----~~lGa~ 238 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG---------AARIIGVDINKDKFAKA----KEVGAT 238 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHH----HHTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHH----HHhCCc
Confidence 4688999999998765 556677766642 24799999999998866 357764
No 328
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=92.90 E-value=0.19 Score=53.74 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=39.2
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.++.|++.++ ++|...
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~~ 238 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG---------ASRIIGVDINKDKFARAK----EFGATE 238 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH----HcCCce
Confidence 4688999999998765 556777777653 247999999999988764 467643
No 329
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=92.75 E-value=0.18 Score=53.94 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=38.1
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||=.+||+ |..++|+|..++ ...|++.|.++.|++.++ .+|..
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~ 242 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG---------ASRIIAIDINGEKFPKAK----ALGAT 242 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH----HhCCc
Confidence 4688999999998765 555667766643 247999999999987653 57764
No 330
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=92.69 E-value=0.21 Score=53.63 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=37.9
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+++|++||-.+||+ |..++|+|..++ ..|++.|.++.|++.++ .+|..
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G----------a~Vi~~~~~~~~~~~a~----~lGa~ 240 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG----------AHVVAFTTSEAKREAAK----ALGAD 240 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESSGGGHHHHH----HHTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCc
Confidence 689999999999876 666777776642 36999999999988664 46754
No 331
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=91.76 E-value=0.22 Score=53.25 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=61.0
Q ss_pred CCCEEEeec-cCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 78 PDHFVLDMC-AAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 78 pg~~VLDmC-AAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
+|++||=.+ +|+ |..++|+|..+. ...|++.|.+..|++.++ ++|...+ .+... .+.. .+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~---------g~~Vi~~~~~~~~~~~~~----~lGad~v--i~~~~-~~~~-~v- 232 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT---------DLTVIATASRPETQEWVK----SLGAHHV--IDHSK-PLAA-EV- 232 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC---------CSEEEEECSSHHHHHHHH----HTTCSEE--ECTTS-CHHH-HH-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHHH----HcCCCEE--EeCCC-CHHH-HH-
Confidence 899999887 333 666777776543 358999999999988764 4776533 22211 1100 00
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.......||.|+- |+|.. ..+..++++|++||++|..
T Consensus 233 --------------~~~~~~g~Dvvid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 233 --------------AALGLGAPAFVFS---TTHTD-------------------------KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp --------------HTTCSCCEEEEEE---CSCHH-------------------------HHHHHHHHHSCTTCEEEEC
T ss_pred --------------HHhcCCCceEEEE---CCCch-------------------------hhHHHHHHHhcCCCEEEEE
Confidence 0011247998875 44422 2467788999999999864
No 332
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=91.65 E-value=0.17 Score=53.86 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=37.0
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
...+++|++||=.+||+ |..++|+|..++ ...|++.|.++.|++++++
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~ 222 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAG---------ACPLVITDIDEGRLKFAKE 222 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTT---------CCSEEEEESCHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHH
Confidence 35789999999998865 666777776643 2359999999999987765
No 333
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=91.24 E-value=0.19 Score=56.49 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=56.5
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
..-+|||+|||.||.+.-+-.+ +--.|.|+|+|+..++...+|.. ..+...+.+.|...+........
T Consensus 87 ~~~~viDLFaG~GGlslG~~~a----------G~~~v~avE~d~~A~~ty~~N~~--~~p~~~~~~~DI~~i~~~~~~~~ 154 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESI----------GGQCVFTSEWNKHAVRTYKANHY--CDPATHHFNEDIRDITLSHQEGV 154 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTT----------TEEEEEEECCCHHHHHHHHHHSC--CCTTTCEEESCTHHHHCTTCTTS
T ss_pred ccceEEEecCCccHHHHHHHHC----------CCEEEEEEeCCHHHHHHHHHhcc--cCCCcceeccchhhhhhcccccc
Confidence 3569999999999988776432 12368999999999998887641 11333455666655421000000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
.. .............+|+|+.-+||-+.-..
T Consensus 155 ~~----~~~~~~i~~~~~~~Dvl~gGpPCQ~FS~A 185 (482)
T 3me5_A 155 SD----EAAAEHIRQHIPEHDVLLAGFPCQPFSLA 185 (482)
T ss_dssp CH----HHHHHHHHHHSCCCSEEEEECCCCCC---
T ss_pred ch----hhHHhhhhhcCCCCCEEEecCCCcchhhh
Confidence 00 00000000112468999999999886554
No 334
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=91.15 E-value=0.44 Score=50.11 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=37.9
Q ss_pred cCCCCCCEEEeeccCcch-HHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..++||++||=.+||+++ .++++|..+. ...|++.|.++.|++++ +.+|...
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~---------g~~Vi~~~~~~~r~~~~----~~~Ga~~ 211 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF---------GAKVIAVDINQDKLNLA----KKIGADV 211 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTS---------CCEEEEEESCHHHHHHH----HHTTCSE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhC---------CCEEEEEECcHHHhhhh----hhcCCeE
Confidence 467999999999998754 4555555432 36899999999998754 4567653
No 335
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=91.05 E-value=1.2 Score=51.45 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=44.5
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
..||.|++|+- .-.+||++|.. .++....+++++||++...||. ..|...|.+.
T Consensus 178 ~~~d~~~~D~f-----~p~~np~~w~~--------------~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~L~~a 231 (676)
T 3ps9_A 178 QKVDAWFLDGF-----APAKNPDMWTQ--------------NLFNAMARLARPGGTLATFTSA-------GFVRRGLQDA 231 (676)
T ss_dssp TCEEEEEECCS-----CGGGCGGGSCH--------------HHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHH
T ss_pred CcccEEEECCC-----CCcCChhhhhH--------------HHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhC
Confidence 57999999984 23689998763 5778888899999987655444 5778888887
Q ss_pred CCcEE
Q 004775 255 EGSVE 259 (731)
Q Consensus 255 ~g~~e 259 (731)
|..++
T Consensus 232 Gf~v~ 236 (676)
T 3ps9_A 232 GFTMQ 236 (676)
T ss_dssp TCEEE
T ss_pred CeEEE
Confidence 75443
No 336
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=91.01 E-value=0.19 Score=53.53 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=38.3
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
+++++|++||-.+||+ |..++|+|..++ ..|++.|.++.|++.++ .+|...
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G----------a~Vi~~~~~~~~~~~~~----~lGa~~ 226 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG----------AETYVISRSSRKREDAM----KMGADH 226 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSSTTHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHHH----HcCCCE
Confidence 4688999999999865 556777776653 36999999999887664 367543
No 337
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=90.92 E-value=0.41 Score=51.40 Aligned_cols=52 Identities=15% Similarity=0.016 Sum_probs=37.7
Q ss_pred cC-CCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LD-VQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld-~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
++ +++|++||-.+||+ |..++|+|..++ ...|++.|.+..|++.++ .+|...
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~~ 243 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLG---------AENVIVIAGSPNRLKLAE----EIGADL 243 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTT---------BSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcC---------CceEEEEcCCHHHHHHHH----HcCCcE
Confidence 36 88999999999654 445666666542 248999999999988764 477643
No 338
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=90.86 E-value=0.25 Score=51.46 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=37.6
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+||+ |..++|+|..++ ..|++.+ +..|++.++ ++|...
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G----------a~Vi~~~-~~~~~~~~~----~lGa~~ 188 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNAG----------YVVDLVS-ASLSQALAA----KRGVRH 188 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEC-SSCCHHHHH----HHTEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEE-ChhhHHHHH----HcCCCE
Confidence 4678999999999864 666777777653 3899999 888887764 467643
No 339
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=90.29 E-value=0.31 Score=51.52 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
++ +|++||-.+||+ |..++|+|..+. |...|++.|.+..|++.++ ++|...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~--------~Ga~Vi~~~~~~~~~~~~~----~lGa~~ 219 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALM--------KNITIVGISRSKKHRDFAL----ELGADY 219 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHC--------TTCEEEEECSCHHHHHHHH----HHTCSE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhc--------CCCEEEEEeCCHHHHHHHH----HhCCCE
Confidence 77 999999999875 666778777651 0136999999999987764 467543
No 340
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=90.15 E-value=0.85 Score=49.37 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+++|++||=.+||+ |..++|+|..++ ...|++.|.++.|+++++ ++|..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~ 260 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG---------ASKVILSEPSEVRRNLAK----ELGAD 260 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCHHHHHHHH----HHTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HcCCC
Confidence 688999999998755 555666666542 348999999999988764 56754
No 341
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=87.72 E-value=0.44 Score=51.57 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCEEEeeccCcchHHHHHHHH----hhcCC-CCC--CCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEI----IHQST-NPG--ALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFP 150 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~----l~~~~-~~~--~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~fp 150 (731)
..+|+|++|+.|.-|+.++.. +.... ..+ ..|.-.|+.||+-..-...|-..+..+.. .+-.++.+.+..|=
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 468999999999988876543 22100 001 24678999999977777766554432110 01123333333221
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEe--------cCCCCCCCccccCh-hhhhhc-cccccc-----chHHHHH
Q 004775 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLC--------DVPCSGDGTLRKAP-DIWRKW-NVGLGN-----GLHSLQV 215 (731)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~--------D~PCSGdGtlrk~p-d~~~~w-~~~~~~-----~L~~lQ~ 215 (731)
. .-++...||.|.+ ++|+.-.. |. .+|-.. ++..+. .....-.
T Consensus 132 ~------------------rlfp~~S~d~v~Ss~aLHWls~~p~~l~~----nkg~i~~~~~~p~~v~~ay~~Qf~~D~~ 189 (359)
T 1m6e_X 132 G------------------RLFPRNTLHFIHSSYSLMWLSQVPIGIES----NKGNIYMANTCPQSVLNAYYKQFQEDHA 189 (359)
T ss_dssp S------------------CCSCTTCBSCEEEESCTTBCSSCCSCCCC----CTTTTSSCSSSCCTTSCCSHHHHHHHHH
T ss_pred h------------------ccCCCCceEEEEehhhhhhcccCchhhhc----cCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 1 1123467888864 44433111 00 011111 111111 1223334
Q ss_pred HHHHHHHhhccCCCEEEEEeCCC
Q 004775 216 QIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 216 ~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.+|+.-.+-|+|||+||.++...
T Consensus 190 ~FL~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 190 LFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp HHHHHHHHHBCTTCEEEEEEEEC
T ss_pred HHHHHHHHHhcCCceEEEEEecC
Confidence 56788888999999999997754
No 342
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=87.54 E-value=1.2 Score=46.97 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+++|++||-.+||+ |..++|+|..+ ...|++.|.+..|++.++ .+|..
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~lGa~ 210 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM----------GLNVVAVDIGDEKLELAK----ELGAD 210 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT----------TCEEEEECSCHHHHHHHH----HTTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----HCCCC
Confidence 688999999999854 55566666543 248999999999988664 46754
No 343
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=86.89 E-value=0.59 Score=49.39 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=32.1
Q ss_pred CCCEEEeec-cC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 78 PDHFVLDMC-AA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 78 pg~~VLDmC-AA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+|++||=.+ +| -|..++|+|..+ ...|++.+.+..|++.+++ +|..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~----------Ga~Vi~~~~~~~~~~~~~~----lGa~ 197 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY----------GLRVITTASRNETIEWTKK----MGAD 197 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT----------TCEEEEECCSHHHHHHHHH----HTCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHh----cCCc
Confidence 899999773 33 245566666543 2489999999999887654 6754
No 344
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=86.82 E-value=1.3 Score=54.13 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=56.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc----cc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC----RA 154 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~----~~ 154 (731)
.-+|||+|||.||.+.-+.++ +- .-.|.|+|+++..++...+|. ++..+.+.|...+... .+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~--------~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di 605 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GI--------SDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGET 605 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TS--------EEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCS
T ss_pred CCeEEEeccCccHHHHHHHHC-CC--------CceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhh
Confidence 458999999999998877543 10 125889999999999887763 3444555554322100 00
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccc
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlr 193 (731)
.... .........+|+|+.-+||-+.-...
T Consensus 606 ~~~~---------~~~lp~~~~vDll~GGpPCQ~FS~ag 635 (1002)
T 3swr_A 606 TNSR---------GQRLPQKGDVEMLCGGPPCQGFSGMN 635 (1002)
T ss_dssp BCTT---------CCBCCCTTTCSEEEECCCCTTCCSSS
T ss_pred hhhh---------hhhcccCCCeeEEEEcCCCcchhhhC
Confidence 0000 00001124799999999998775543
No 345
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=86.80 E-value=1.1 Score=47.06 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=39.0
Q ss_pred hcCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 73 FLDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 73 lLd~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.+.+++|++||-.+|| -|.-++|+|..++ ..|++.|.+..|++.+++ +|..
T Consensus 139 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~----lga~ 191 (340)
T 3gms_A 139 TLNLQRNDVLLVNACGSAIGHLFAQLSQILN----------FRLIAVTRNNKHTEELLR----LGAA 191 (340)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESSSTTHHHHHH----HTCS
T ss_pred hcccCCCCEEEEeCCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHh----CCCc
Confidence 3578999999999886 4666777777653 489999999999877654 5654
No 346
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=86.59 E-value=1.4 Score=46.28 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=36.9
Q ss_pred cCCCCCCEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||-.+| +-|..+++++..+ ...|++.|.+..+++.+. .+|..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~----------G~~Vi~~~~~~~~~~~~~----~~ga~ 213 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF----------GARVIATAGSEDKLRRAK----ALGAD 213 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH----hcCCC
Confidence 36789999999998 3455566666653 248999999999988764 35654
No 347
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=86.58 E-value=1.7 Score=46.05 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=34.3
Q ss_pred cCCCCCCEEEeecc-C-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.++ | -|.-++++|..+ ...|++.|.+..|++.++ .+|..
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~lGa~ 214 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAF----------GAEVYATAGSTGKCEACE----RLGAK 214 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----hcCCC
Confidence 46889999997743 2 244455555543 247999999999988765 36654
No 348
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=86.31 E-value=0.73 Score=48.86 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=36.2
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH---HHHHHHHHHHHHcC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV---QRCNLLIHQTKRMC 135 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~---~R~~~L~~n~kRlg 135 (731)
-.+|+.|||-+||+|+. ++.|..++ -..+++|+++ .-+.+++.++++.+
T Consensus 240 ~~~~~~vlDpF~GsGtt-~~aa~~~~----------r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVT-ARVAIQEG----------RNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHH-HHHHHHHT----------CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHH-HHHHHHcC----------CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 36899999999999984 44444442 4789999999 88888888776654
No 349
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=86.14 E-value=1.1 Score=47.01 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=34.7
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+|+ -|.-++|++..+ ...|++.+.+..|++.++ .+|..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~~ga~ 195 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK----------GAHTIAVASTDEKLKIAK----EYGAE 195 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH----HTTCS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH----HcCCc
Confidence 368899999988853 244455555543 248999999999988653 46654
No 350
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=86.13 E-value=1.2 Score=42.71 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=30.4
Q ss_pred cCCCCCCEEEeeccCc--chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP--GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
+++++|++||-.+|+. |.-+++++... ...|++.|.+..+.+.+
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~----------G~~V~~~~~~~~~~~~~ 79 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMI----------GARIYTTAGSDAKREML 79 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHH
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH
Confidence 4678999999988532 33344444432 24799999999887655
No 351
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=86.09 E-value=1 Score=47.54 Aligned_cols=50 Identities=18% Similarity=0.079 Sum_probs=35.6
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+++ +|++||-.+||+ |..++|+|..++ .+.|++.|.+..|++.++ .+|..
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~G---------a~~Vi~~~~~~~~~~~~~----~~Ga~ 214 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASG---------AYPVIVSEPSDFRRELAK----KVGAD 214 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTT---------CCSEEEECSCHHHHHHHH----HHTCS
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HhCCC
Confidence 467 999999999854 455666665532 237999999999987664 46654
No 352
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=86.01 E-value=1.2 Score=46.49 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||=.+|+ -|.-++|++..++ ..|++.+.+..|++.++ .+|..
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~----~~Ga~ 187 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALG----------AKLIGTVSSPEKAAHAK----ALGAW 187 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCC
Confidence 468899999988742 3555666666542 48999999999988764 45654
No 353
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=85.90 E-value=1.5 Score=51.71 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=35.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n 130 (731)
..+|||++||.||.++-+.++-+... ..=-.|.|+|+|+..++++++|
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~----~~f~vv~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSG----LKLETRWAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHT----EEEEEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccC----CceeEEEEEeCCHHHHHHHHHH
Confidence 46899999999999988865522100 0002688999999999998877
No 354
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=85.72 E-value=1 Score=47.50 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=35.8
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+|+ -|.-++|+|..+ ...|++.+.+..|.+.+++ +|..
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~~----~ga~ 206 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGM----------GAKVIAVVNRTAATEFVKS----VGAD 206 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSGGGHHHHHH----HTCS
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHh----cCCc
Confidence 467899999988862 355566666553 2489999999998876653 5654
No 355
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=85.46 E-value=0.78 Score=48.69 Aligned_cols=51 Identities=6% Similarity=-0.077 Sum_probs=33.7
Q ss_pred cCCCCC------CEEEeeccCc-chHH-HHHH-HHhhcCCCCCCCCCeEEEEEeCCHH---HHHHHHHHHHHcCCC
Q 004775 74 LDVQPD------HFVLDMCAAP-GSKT-FQLL-EIIHQSTNPGALPNGMVIANDLDVQ---RCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg------~~VLDmCAAP-GsKT-~qLa-e~l~~~~~~~~~p~G~VvAnDid~~---R~~~L~~n~kRlg~~ 137 (731)
+.+++| ++||=.+||+ |..+ +|+| ..++ ...|++.|.+.. |++.++ ++|..
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G---------a~~Vi~~~~~~~~~~~~~~~~----~lGa~ 224 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG---------YENLYCLGRRDRPDPTIDIIE----ELDAT 224 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC---------CCEEEEEECCCSSCHHHHHHH----HTTCE
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC---------CcEEEEEeCCcccHHHHHHHH----HcCCc
Confidence 357889 9999999843 3334 4444 3321 235999999988 887653 57764
No 356
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=85.38 E-value=0.42 Score=49.82 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=33.9
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
.+||.|++|||.-........++.+.. .............++..+.++||+||.|+....
T Consensus 39 ~s~DlIvtdPPY~~~~~y~~~~~~~~~--~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 39 ASVHLVVTSPPYWTLKRYEDTPGQLGH--IEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp TCEEEEEECCCCCCCC-------CCHH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceeEEEECCCCCCccccCCChhhhcc--cccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 689999999998543322222111100 000011122345688999999999999987644
No 357
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=85.23 E-value=0.85 Score=48.44 Aligned_cols=51 Identities=6% Similarity=0.013 Sum_probs=35.9
Q ss_pred CCC-CCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQ-PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~-pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++ +|++||=.+||+ |..++|+|..++ ..|++.|.+..|++.+.+ ++|...
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G----------a~Vi~~~~~~~~~~~~~~---~lGa~~ 228 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMG----------HHVTVISSSNKKREEALQ---DLGADD 228 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSTTHHHHHHT---TSCCSC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CeEEEEeCChHHHHHHHH---HcCCce
Confidence 677 999999998654 444666666542 479999999988776542 467543
No 358
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=84.47 E-value=3 Score=42.05 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=78.4
Q ss_pred CCCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.|.++|=-+|+.+ |....+|..|... ...|+.+|.+...++.+...+..++...+.+...|..+...+.-
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~-------Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~-- 75 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL-------GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVIN-- 75 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHH--
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHH--
Confidence 3677887777653 5667777776652 35899999999998888888887776667777777665221100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccC-hhh-hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~-pd~-~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
............|.++..+--.+...+... .+. +..|....-.++. ....+.+.++.+++.||+||..
T Consensus 76 ---------~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~-~~~~~~~~~~~~~~~~G~IVni 145 (256)
T 4fs3_A 76 ---------GFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSY-SLTIVAHEAKKLMPEGGSIVAT 145 (256)
T ss_dssp ---------HHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTH-HHHHHHHHHHTTCTTCEEEEEE
T ss_pred ---------HHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCEEEEE
Confidence 000011223578888876643332222111 111 2223211111111 1233455667788899999865
No 359
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=84.20 E-value=0.68 Score=48.98 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=39.4
Q ss_pred CCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004775 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (731)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~ 136 (731)
-.+|+.|||-+||+|+ |++.|..++ -..+++|+++..+.+++.++++.+.
T Consensus 250 ~~~~~~VlDpF~GsGt-t~~aa~~~g----------r~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNT-TGLVAERES----------RKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp CCTTCEEEETTCTTCH-HHHHHHHTT----------CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred CCCCCEEEECCCCCCH-HHHHHHHcC----------CCEEEEeCCHHHHHHHHHHHHhccc
Confidence 4789999999999998 455555542 4789999999999988887765543
No 360
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=83.41 E-value=4.8 Score=40.28 Aligned_cols=135 Identities=10% Similarity=0.042 Sum_probs=74.7
Q ss_pred CCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|.+||=.+|+.| |...+++..|... ...|+.++.+......+.+.....+..++.+...|..+...+.-
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~--- 76 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEA-------GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIET--- 76 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHH---
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHC-------CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHH---
Confidence 567777776632 3667777777652 34788899887766766666666655567777777765322110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...........+|.++..+--... +.+ ...++.|.. ....++ .-...+++.++.+++.+|+||
T Consensus 77 --------~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~---~~~~n~-~~~~~l~~~~~~~~~~~g~iv 144 (266)
T 3oig_A 77 --------CFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLL---AHNISS-YSLTAVVKAARPMMTEGGSIV 144 (266)
T ss_dssp --------HHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHGGGCTTCEEEE
T ss_pred --------HHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHH---HHHHhH-HHHHHHHHHHHhhcCCCceEE
Confidence 000011112468988886543331 111 112222221 000111 123456777888888899999
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
+.+
T Consensus 145 ~is 147 (266)
T 3oig_A 145 TLT 147 (266)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 361
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=83.28 E-value=2 Score=44.87 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=35.3
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||-.+|+ -|.-++|++... ...|++.|.+..|++.+. +.+|..
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~---~~~g~~ 197 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLK----------GCRVVGIAGGAEKCRFLV---EELGFD 197 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH---HTTCCS
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH---HHcCCC
Confidence 468999999988873 344455555443 248999999999987663 345653
No 362
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=82.98 E-value=4.6 Score=41.55 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=78.7
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV 141 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~v 141 (731)
|-+.||-+...| .|.+||=.+|+. ++....++..|... ...|+.+|.+......+.......+. +.+
T Consensus 17 ~gp~sm~~~~~l---~~k~vlVTGasg~~GIG~~ia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~ 84 (296)
T 3k31_A 17 QGPGSMRTGMLM---EGKKGVIIGVANDKSLAWGIAKAVCAQ-------GAEVALTYLSETFKKRVDPLAESLGV--KLT 84 (296)
T ss_dssp ----CCCCCCTT---TTCEEEEECCCSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHHHTC--CEE
T ss_pred cCCccccchhcc---CCCEEEEEeCCCCCCHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHhcCC--eEE
Confidence 556777665544 367888888764 46677788777652 35799999998766666665555543 455
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHH
Q 004775 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQ 216 (731)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~ 216 (731)
...|..+...+.- ...........+|.++..+-.... +.+ ...++.|.+ ....++ .-...
T Consensus 85 ~~~Dv~d~~~v~~-----------~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~---~~~vN~-~g~~~ 149 (296)
T 3k31_A 85 VPCDVSDAESVDN-----------MFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLT---SMHISC-YSFTY 149 (296)
T ss_dssp EECCTTCHHHHHH-----------HHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHH---HHHHHT-HHHHH
T ss_pred EEcCCCCHHHHHH-----------HHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHH---HHHHHH-HHHHH
Confidence 6666654221110 000011112468999885533221 111 112222322 111111 12345
Q ss_pred HHHHHHhhccCCCEEEEEe
Q 004775 217 IAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 217 IL~rAl~lLKpGG~LVYST 235 (731)
+++.++..++.+|+||+.+
T Consensus 150 l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 150 IASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHHHhhcCCEEEEEE
Confidence 6777888888899999864
No 363
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=82.90 E-value=1.5 Score=45.89 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=34.9
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||-.+|+ -|.-+++++... ...|++.|.+..+++.+++ .+|..
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~----------G~~V~~~~~~~~~~~~~~~---~~g~~ 203 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMM----------GCYVVGSAGSKEKVDLLKT---KFGFD 203 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHHH---TSCCS
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHH---HcCCc
Confidence 468899999999872 344455554442 2489999999998876642 35653
No 364
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=82.88 E-value=2.7 Score=43.88 Aligned_cols=46 Identities=20% Similarity=0.105 Sum_probs=31.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.++++|++||-.+|+ |+....+++++... ...|++.|.+..+++.+
T Consensus 141 ~~~~~g~~vlV~Ga~-ggiG~~~~~~~~~~-------G~~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 141 CGVKGGETVLVSAAA-GAVGSVVGQIAKLK-------GCKVVGAAGSDEKIAYL 186 (333)
T ss_dssp SCCCSSCEEEEESTT-BHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHH
T ss_pred hCCCCCCEEEEecCC-CcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 368899999999873 33333333433321 24899999999888766
No 365
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=82.87 E-value=1.8 Score=45.63 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=33.8
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
..+++|++||-.+|| -|.-+++++..+. ...|++.|.++.+++.++
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~---------Ga~Vi~~~~~~~~~~~~~ 213 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS---------GATIIGVDVREEAVEAAK 213 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHT---------CCEEEEEESSHHHHHHHH
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH
Confidence 368899999999987 3445566655541 137999999999987663
No 366
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=82.85 E-value=2.3 Score=45.24 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=36.2
Q ss_pred cCCCCCCEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||=.+| +-|..++|+|..++ ..|++.+.+..|++.++ ++|..
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G----------a~Vi~~~~~~~~~~~~~----~~Ga~ 210 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAK----------CHVIGTCSSDEKSAFLK----SLGCD 210 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTT----------CEEEEEESSHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHHH----HcCCc
Confidence 46899999999884 34555666666532 47999999999887664 46754
No 367
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=82.67 E-value=1.6 Score=45.56 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=35.6
Q ss_pred cCCCCCC-EEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDH-FVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~-~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|+ +||=.+| +-|..++|+|..++ ..|++.+.+..|++.++ .+|...
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G----------a~vi~~~~~~~~~~~~~----~lGa~~ 197 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRG----------YTVEASTGKAAEHDYLR----VLGAKE 197 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCTTCHHHHH----HTTCSE
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCC----------CEEEEEECCHHHHHHHH----HcCCcE
Confidence 3678886 8998887 33555666666542 36999999988887664 477653
No 368
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=82.23 E-value=3.5 Score=43.63 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=31.1
Q ss_pred cCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.++++|++||-.+|+ |+....+++++... ...|++.|.+..+++.+
T Consensus 158 ~~~~~g~~vlV~Ga~-ggiG~~~~~~a~~~-------Ga~Vi~~~~~~~~~~~~ 203 (354)
T 2j8z_A 158 GNVQAGDYVLIHAGL-SGVGTAAIQLTRMA-------GAIPLVTAGSQKKLQMA 203 (354)
T ss_dssp SCCCTTCEEEESSTT-SHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHH
T ss_pred cCCCCCCEEEEECCc-cHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHH
Confidence 468899999988753 33333444433321 24899999999998876
No 369
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=81.29 E-value=1.4 Score=46.65 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=35.8
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCS 237 (731)
.+||.|++|||......- .|..............+|..+.++||+||.|+.....
T Consensus 32 ~svDlI~tDPPY~~~~~~--------~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 32 ESISLVMTSPPFALQRKK--------EYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SCEEEEEECCCCSSSCSC--------SSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCeeEEEECCCCCCCccc--------ccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 679999999998543210 1111111223344567888899999999999887543
No 370
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=81.20 E-value=2.5 Score=52.92 Aligned_cols=96 Identities=9% Similarity=0.032 Sum_probs=55.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
...+|||+|||.||.+.-+-.+ + -.-.|.|+|+++..+....+|. ++..+.+.|...+....+...
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A-G--------~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gd 915 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA-G--------ISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGE 915 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT-T--------SEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTC
T ss_pred CCceEEecccCccHHHHHHHHC-C--------CCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccc
Confidence 3468999999999998876432 1 0125889999999999888763 333445555432210000000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtl 192 (731)
... ...........+|+|+.-+||-+.-..
T Consensus 916 i~~-----~~~~~lp~~~~vDvl~GGpPCQ~FS~a 945 (1330)
T 3av4_A 916 VTN-----SLGQRLPQKGDVEMLCGGPPCQGFSGM 945 (1330)
T ss_dssp SBC-----SSCCBCCCTTTCSEEEECCCCTTTCSS
T ss_pred hhh-----hhhhhccccCccceEEecCCCcccccc
Confidence 000 000000112468999999999876544
No 371
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=81.17 E-value=2 Score=47.33 Aligned_cols=51 Identities=18% Similarity=0.012 Sum_probs=36.5
Q ss_pred cCCCCCCEEEeecc-C-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|++||=.+| | -|..++|+|..+ ...|++.+.+..|++.++ .+|...
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~----------Ga~vi~~~~~~~~~~~~~----~lGa~~ 276 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG----------GANPICVVSSPQKAEICR----AMGAEA 276 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH----HHTCCE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc----------CCeEEEEECCHHHHHHHH----hhCCcE
Confidence 47899999998876 3 355566666654 247888899999988764 467643
No 372
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=81.12 E-value=2.2 Score=45.43 Aligned_cols=50 Identities=6% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCC-CCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQ-PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~-pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++ +|++||=.+||+ |..++|+|..+ ...|++.+.+..|++.+.+ .+|..
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~----------Ga~Vi~~~~~~~~~~~~~~---~lGa~ 234 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAF----------GSKVTVISTSPSKKEEALK---NFGAD 234 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT----------TCEEEEEESCGGGHHHHHH---TSCCS
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHH---hcCCc
Confidence 567 999999998643 34455555543 2479999999988776542 46654
No 373
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=81.00 E-value=0.98 Score=47.56 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=33.5
Q ss_pred hcCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (731)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~ 128 (731)
.+++ +|++||-.+||+ |..++|+|..++ .+.|++.|.+..|++.++
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G---------a~~Vi~~~~~~~~~~~~~ 206 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASG---------AGPILVSDPNPYRLAFAR 206 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTT---------CCSEEEECSCHHHHGGGT
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH
Confidence 4567 999999999854 555666666542 237999999999887654
No 374
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=80.28 E-value=1.6 Score=46.01 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=34.1
Q ss_pred CCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 75 DVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 75 d~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
++++|++||-.+|+ -|..+++++... ...|++.|.+..+++.+. .+|..
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------Ga~V~~~~~~~~~~~~~~----~~g~~ 216 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM----------GYRVLGIDGGEGKEELFR----SIGGE 216 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT----------TCEEEEEECSTTHHHHHH----HTTCC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC----------CCcEEEEcCCHHHHHHHH----HcCCc
Confidence 67899999999983 344455555442 248999999988876553 45653
No 375
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=79.91 E-value=1.7 Score=47.66 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=34.0
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeE----EEEEeCCHHHHHHHHHHHH
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM----VIANDLDVQRCNLLIHQTK 132 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~----VvAnDid~~R~~~L~~n~k 132 (731)
-+|||+|||-||.+..+-++ +. +-.. |.|+|+|+..+....+|..
T Consensus 11 lrvldLFsGiGG~~~Gl~~a-G~-------~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNI-AR-------SKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHH-HH-------HHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ceEEEEecCcCHHHHHHHHh-CC-------ccccceeeEEEEecCHHHHHHHHHHcC
Confidence 48999999999988877543 20 0123 8899999999988887753
No 376
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=79.45 E-value=2.8 Score=43.56 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=32.1
Q ss_pred hcCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 73 FLDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 73 lLd~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
.+++++|++||-.+|+ -|.-+++++... ...|++.|.+..++..+.+
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------G~~V~~~~~~~~~~~~~~~ 183 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL----------GAKLIGTVGTAQKAQSALK 183 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH
Confidence 3468899999988853 233344444432 2489999999999877654
No 377
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=78.99 E-value=4.3 Score=42.31 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.6
Q ss_pred cCCCCCCEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
..+++|++||-.+| |-|.-+++++... ...|++.|.+..|++.+.+
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------G~~Vi~~~~~~~~~~~~~~ 188 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHL----------GATVIGTVSTEEKAETARK 188 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHT----------TCEEEEEESSHHHHHHHHH
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHH
Confidence 46889999998875 3344455555442 2489999999988877643
No 378
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=78.85 E-value=7.2 Score=37.58 Aligned_cols=135 Identities=15% Similarity=0.076 Sum_probs=85.4
Q ss_pred hhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEE--EecCCCCCCcc
Q 004775 502 TIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFE--RQTSREGNSAP 579 (731)
Q Consensus 502 ~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~vs~~vk~il~~n~~~g~~lkii~~GvK~F~--rq~~~~~~~~~ 579 (731)
.+++.+..| + . +..+...+.|.. ..+||||+..+.+.+++. +.++++.|+-+=. ..+++.
T Consensus 17 ~i~~~L~~y-~-~--~~~~~~~~~~~~----~~~Vy~v~~~~~~~~~~~-----~~~l~s~G~~~Gk~~~~~t~~----- 78 (166)
T 2p38_A 17 LILKEAEKY-G-E--LLHEFFCVVEGK----YRDVYAVNEEVWKIIEDI-----NMRPYSLGTFVGTIRVDENLV----- 78 (166)
T ss_dssp HHHHHHHTT-E-E--ECCCCEEEEESS----SEEEEEECHHHHHHTTTC-----CCCGGGTEEEEEEEEECTTSC-----
T ss_pred HHHHHHHHh-c-C--CCcccEEEEEcc----CcEEEEECcHHHHHhhcc-----CccceEEEEEEEEEEecccCC-----
Confidence 345556655 3 2 223334444543 489999999998875332 4677888854322 222222
Q ss_pred cceeeccchhhhhhhcccCcEEEcCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEeCCCCCCCCCccccCC
Q 004775 580 CSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDAS 659 (731)
Q Consensus 580 c~~Ri~~eGl~~i~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~e~~~~~~~l~~G~~vl~~~~~~~~~~~~~~~~~~ 659 (731)
=.||++-+|+..+ ++ .+.+|.++..-.+.+|-..++.-+.+.+- . +..|.-|++++. +. .
T Consensus 79 ~kf~pti~~l~~l-~~-~k~kV~V~~~ae~~flyG~dV~k~gI~~~------~-~~~~~~VvV~~~-~~----------~ 138 (166)
T 2p38_A 79 EKFYPNLEFFSLI-KL-EKNYVILGPKASFLFTTGKDAPKEAVREI------K-WQGSKRVVVLND-LG----------D 138 (166)
T ss_dssp EEEEECHHHHTTE-EE-CSSEEEECHHHHHHHHTTCCBCGGGEEEE------E-CSSCSEEEEECT-TS----------C
T ss_pred CeEEEehHHhhhc-cc-cccEEEECCcceEeeecCCCcchhcceEE------e-ecCCCEEEEEEC-CC----------c
Confidence 3799999999999 76 56677888888888887766654444321 1 566778888874 22 2
Q ss_pred eEEEEEe----eccceeee
Q 004775 660 TIAIGCW----KGRASLSV 674 (731)
Q Consensus 660 ~~~~~~W----~g~~s~~l 674 (731)
.+.+..+ +|+.-.|+
T Consensus 139 pLG~G~a~~s~~gkvv~n~ 157 (166)
T 2p38_A 139 IIGIGLINPKSDRRFIKNL 157 (166)
T ss_dssp EEEEEEECTTCSTTSEEEE
T ss_pred EEEEEEEEECCCCEEEEEc
Confidence 4778877 66654443
No 379
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=78.37 E-value=7.2 Score=40.40 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=32.1
Q ss_pred cCCCCCCEEEeec-cC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMC-AA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmC-AA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
..+++|++||=.+ +| -|..++|+|..++ ..|++.+ +..+.+. ++++|...
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G----------a~vi~~~-~~~~~~~----~~~lGa~~ 199 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKG----------TTVITTA-SKRNHAF----LKALGAEQ 199 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEE-CHHHHHH----HHHHTCSE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC----------CEEEEEe-ccchHHH----HHHcCCCE
Confidence 4789999999775 33 3555666666542 3788887 5555443 45577754
No 380
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=78.19 E-value=7 Score=38.60 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=74.0
Q ss_pred CCEEEeeccCcchHHHHHHHHhhc-CCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQ-STNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~-~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+|| +.-|.|+...+++..|.. . ...|++++.+..++..+...+...+ .++.+...|..+...+.-
T Consensus 4 ~k~vl-ITGasggIG~~~a~~L~~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~--- 71 (276)
T 1wma_A 4 IHVAL-VTGGNKGIGLAIVRDLCRLF-------SGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRA--- 71 (276)
T ss_dssp CCEEE-ESSCSSHHHHHHHHHHHHHS-------SSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHH---
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHhc-------CCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHH---
Confidence 45666 455678888888888764 3 3579999999988887777776654 345666666654221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccC-hhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~-pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
...........+|.|+..+-....+..... ++.|.. ....++ .-...+++.+++.++.+|+|||.+.
T Consensus 72 --------~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 72 --------LRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEV---TMKTNF-FGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp --------HHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHH---HHHHHT-HHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred --------HHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHh---hhheee-eeHHHHHHHHHHhhCCCCEEEEECC
Confidence 000000112368999875533222211111 122211 111111 1234577778888877899998743
No 381
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=77.57 E-value=4 Score=42.26 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=33.4
Q ss_pred CCCCCC-EEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 75 DVQPDH-FVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 75 d~~pg~-~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
++++++ .||=.+| +-|..++|+|..++ ..|++.+.+..|++.++ .+|...
T Consensus 142 ~~~~~~g~VlV~Ga~G~vG~~aiqla~~~G----------a~Vi~~~~~~~~~~~~~----~lGa~~ 194 (324)
T 3nx4_A 142 GIRPQDGEVVVTGASGGVGSTAVALLHKLG----------YQVAAVSGRESTHGYLK----SLGANR 194 (324)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCGGGHHHHH----HHTCSE
T ss_pred ccCCCCCeEEEECCCcHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHH----hcCCCE
Confidence 455632 3877665 34566677766542 37999999999988775 467654
No 382
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=77.40 E-value=2.1 Score=44.63 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=35.5
Q ss_pred cCCCCCC-EEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDH-FVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~-~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|+ +||=.+| +-|..++|+|..++ ..|++.+.+..|++.++ ++|...
T Consensus 145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G----------a~vi~~~~~~~~~~~~~----~lGa~~ 198 (330)
T 1tt7_A 145 NGLSPEKGSVLVTGATGGVGGIAVSMLNKRG----------YDVVASTGNREAADYLK----QLGASE 198 (330)
T ss_dssp TTCCGGGCCEEEESTTSHHHHHHHHHHHHHT----------CCEEEEESSSSTHHHHH----HHTCSE
T ss_pred cCcCCCCceEEEECCCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCcE
Confidence 3578886 8998887 33555667766643 35999999988887664 467643
No 383
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=76.88 E-value=16 Score=36.99 Aligned_cols=62 Identities=6% Similarity=-0.004 Sum_probs=45.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+...+..++.+...|..+
T Consensus 28 ~k~vlITG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 89 (286)
T 1xu9_A 28 GKKVIVTG-ASKGIGREMAYHLAKM-------GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 89 (286)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 66777555 5677788888877652 34799999999998888777776665567777777654
No 384
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=76.69 E-value=1.6 Score=43.01 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=76.6
Q ss_pred hhHHHHHhhhcCCCCCCCCCceEeecCCCC-----cceEEEEeCHHHHHHHHhccCCCCccEEEEceeeeEEEecCCCCC
Q 004775 502 TIINSIKTFYGIDDSFQLSGQLVSRNGDTN-----RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 576 (731)
Q Consensus 502 ~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~-----~~k~iy~vs~~vk~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~ 576 (731)
.+++.+..|-|-+ . .+|+.| +++. ..+++||+|+.+.+.+++- .+.+++++|+.+ .+-. +.
T Consensus 11 ~vf~kL~~yiG~n----~-~~li~~-~~~~~~frl~~~rVyyv~~~i~~~a~~i----~r~~l~s~Gtc~-Gkft-k~-- 76 (188)
T 1sqw_A 11 VMFEKIAKYIGEN----L-QLLVDR-PDGTYCFRLHNDRVYYVSEKIMKLAANI----SGDKLVSLGTCF-GKFT-KT-- 76 (188)
T ss_dssp HHHHHHHHHHGGG----T-HHHHEE-TTEEEEEEEETTEEEEEEHHHHHTTTSS----CHHHHHHHSEEE-EEEC-TT--
T ss_pred HHHHHHHHHhccC----H-HHHhcC-CCCceEEEecCCEEEEECHHHHHHHhcC----CcCCeeEeeeEE-EEEe-cC--
Confidence 3466777776654 1 134333 3331 3589999999999976433 368899999965 4332 11
Q ss_pred CcccceeeccchhhhhhhcccCcEEEcCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEeCC
Q 004775 577 SAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKG 646 (731)
Q Consensus 577 ~~~c~~Ri~~eGl~~i~p~~~~r~v~~~~~d~~~lL~~~~~~~~~~~~~e~~~~~~~l~~G~~vl~~~~~ 646 (731)
=.||++-+|+.+|.||-..|+ .+..+--..+|-.+++.-..+.. .=+++..|--|+++...
T Consensus 77 ---gkF~L~It~l~~La~~~~~kV-~Vk~~~E~~flyG~nVfk~~V~~-----i~e~i~~~~~VvV~n~~ 137 (188)
T 1sqw_A 77 ---HKFRLHVTALDYLAPYAKYKV-WIKPGAEQSFLYGNHVLKSGLGR-----ITENTSQYQGVVVYSMA 137 (188)
T ss_dssp ---SCEEECGGGHHHHGGGCSCEE-EECHHHHHHHTTTCCEEGGGEEE-----ECTTCCTTCEEEEEETT
T ss_pred ---CcEEEchhHHHHhhhccCcEE-EECCCceeeEEeccchhHHhhhh-----cCCCCCCCCEEEEEeCC
Confidence 389999999999999965554 55555455566555543322211 11245677778888743
No 385
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=76.18 E-value=2 Score=43.78 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=35.2
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl 238 (731)
.+||.|++|||...... .|..+. ........-..+|..+.++|++||.|+...|..
T Consensus 22 ~~vdlI~~DPPY~~~~~------~~d~~~--~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~ 77 (260)
T 1g60_A 22 KSVQLAVIDPPYNLSKA------DWDSFD--SHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF 77 (260)
T ss_dssp TCEEEEEECCCCSSCSS------GGGCCS--SHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH
T ss_pred cccCEEEECCCCCCCcc------cccccC--CHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcH
Confidence 57999999999743211 111111 111222344567888889999999988876543
No 386
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=75.62 E-value=1.7 Score=44.68 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=34.6
Q ss_pred CCCCCEEEeecc-C-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 76 VQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 76 ~~pg~~VLDmCA-A-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+++|++||-.+| | -|..++|+|..+ ...|++.|.+..|++.++ .+|..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~~ga~ 172 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM----------GLRVLAAASRPEKLALPL----ALGAE 172 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT----------TCEEEEEESSGGGSHHHH----HTTCS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH----hcCCC
Confidence 789999999987 2 345566666553 248999999999887663 46654
No 387
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=75.45 E-value=9.1 Score=41.67 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=35.5
Q ss_pred cCCCCCCEEEeecc-C-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|++||=.+| | -|..++|+|..+ ...|++.+.+..|++.+ +.+|...
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~----------Ga~vi~~~~~~~~~~~~----~~lGa~~ 268 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG----------GGIPVAVVSSAQKEAAV----RALGCDL 268 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHH----HHTTCCC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH----HhcCCCE
Confidence 57899999998776 2 244455555543 24788999999998876 3567654
No 388
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=75.34 E-value=5.7 Score=42.05 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=33.6
Q ss_pred hcCCC--C-------CCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCH---HHHHHHHHHHHHcCCC
Q 004775 73 FLDVQ--P-------DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDV---QRCNLLIHQTKRMCTA 137 (731)
Q Consensus 73 lLd~~--p-------g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~---~R~~~L~~n~kRlg~~ 137 (731)
.++++ + |++||-.+||+ |..++|+|..+ ...|++.|.+. .|++.++ .+|..
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~----------Ga~Vi~~~~~~~~~~~~~~~~----~~ga~ 229 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTY----------GLEVWMANRREPTEVEQTVIE----ETKTN 229 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHH----------TCEEEEEESSCCCHHHHHHHH----HHTCE
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhC----------CCEEEEEeCCccchHHHHHHH----HhCCc
Confidence 34677 8 99999999832 33344444443 23899999998 7876553 45653
No 389
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=73.56 E-value=5.3 Score=42.21 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=34.1
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
.++++|++||-.+|+ -|.-+++++... ...|++.+.++.|++.+ +.+|..
T Consensus 166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~----~~~ga~ 217 (351)
T 1yb5_A 166 ACVKAGESVLVHGASGGVGLAACQIARAY----------GLKILGTAGTEEGQKIV----LQNGAH 217 (351)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHH----HHTTCS
T ss_pred hCCCCcCEEEEECCCChHHHHHHHHHHHC----------CCEEEEEeCChhHHHHH----HHcCCC
Confidence 468899999998873 233444444432 24799999999988754 346654
No 390
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=73.15 E-value=6.2 Score=40.68 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-----CH----------------------HHHHHHH--
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-----DV----------------------QRCNLLI-- 128 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-----d~----------------------~R~~~L~-- 128 (731)
|| .|++++..-|+-+..++.+...-. + ..+...|++.|. .. ..+..+.
T Consensus 70 pG-~ivE~GV~rG~S~~~~a~~~~~l~-~-~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 70 PG-VIMEFGVRFGRHLGTFAALRGVYE-P-YNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp CS-EEEEECCTTCHHHHHHHHHHHHHC-T-TCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred CC-eEEEEecccCHHHHHHHHHHHHhc-c-cCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 45 899999999998888776533100 0 013578888882 11 1122111
Q ss_pred -HHHHHcCC--CceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004775 129 -HQTKRMCT--ANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (731)
Q Consensus 129 -~n~kRlg~--~ni~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~ 204 (731)
++.++++. .++.++.+++... |.+. .......||.|.+|+-
T Consensus 147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l----------------~~~~~~~~dlv~ID~D------------------- 191 (257)
T 3tos_A 147 HECSDFFGHVTQRSVLVEGDVRETVPRYL----------------AENPQTVIALAYFDLD------------------- 191 (257)
T ss_dssp HHTTSTTTTSCCSEEEEESCHHHHHHHHH----------------HHCTTCCEEEEEECCC-------------------
T ss_pred HhhhhhcCCCCCcEEEEEecHHHHHHHHH----------------HhCCCCceEEEEEcCc-------------------
Confidence 12234554 5788888877541 1100 0012246999999873
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEeCCC--CCcCcHHHHHHHHHHCCCcEEEEec
Q 004775 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM--NPVENEAVVAEILRKCEGSVELVDV 263 (731)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl--~p~ENEaVV~~~L~~~~g~~elvd~ 263 (731)
+..-....+...+.+|++||.||+=-... .|.+.+|| .+++.+++..++....
T Consensus 192 -----~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~-~ef~~~~~~~i~~~p~ 246 (257)
T 3tos_A 192 -----LYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAM-RKVLGLDHAPLRLLPG 246 (257)
T ss_dssp -----CHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHH-HHHTCTTSSCCEECTT
T ss_pred -----ccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHH-HHHHhhCCCeEEEccC
Confidence 01122456778899999999999876532 35555554 8888877655555443
No 391
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=72.47 E-value=3.7 Score=43.17 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=33.9
Q ss_pred cCCCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++|++||=.+|+ -|..++|+|..++ ..|++. .+..|++.+ +.+|..
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G----------a~Vi~~-~~~~~~~~~----~~lGa~ 196 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARG----------ARVFAT-ARGSDLEYV----RDLGAT 196 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEE-ECHHHHHHH----HHHTSE
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCC----------CEEEEE-eCHHHHHHH----HHcCCC
Confidence 468899999998853 2555666665532 378898 888887755 346754
No 392
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=70.54 E-value=15 Score=36.45 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=71.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+|| +.-|.|+...++++.|... ...|++++. +..++..+...++..+. ++.+...|..+...+.-
T Consensus 21 ~k~vl-ItGasggiG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~--- 88 (274)
T 1ja9_A 21 GKVAL-TTGAGRGIGRGIAIELGRR-------GASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVA--- 88 (274)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHH---
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC-------CCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHH---
Confidence 56777 4455688888888888753 347888888 88888777776666553 45666666654221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...........+|.|+..+-....+.+. ..++.|.. ....++ .-...+++.+++.++.||++|+.+
T Consensus 89 --------~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~---~~~~n~-~~~~~l~~~~~~~~~~~~~iv~~s 155 (274)
T 1ja9_A 89 --------LFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDK---VFNLNT-RGQFFVAQQGLKHCRRGGRIILTS 155 (274)
T ss_dssp --------HHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHH---HHHHHH-HHHHHHHHHHHHHHhhCCEEEEEc
Confidence 0000001123689888755433222221 12222221 111111 122345666677666678988863
No 393
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=70.18 E-value=25 Score=35.91 Aligned_cols=149 Identities=11% Similarity=0.042 Sum_probs=73.2
Q ss_pred EecCccccchhhhcCCCCCCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce
Q 004775 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL 139 (731)
Q Consensus 61 ~~Qd~~Smlp~llLd~~pg~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni 139 (731)
+.|.+.+|-... ..-.|.+||=.+|+.| |....++..|... ...|+.++.+......+.......+ ++
T Consensus 15 ~~~gp~~~~~~~--~~l~gk~~lVTGasg~~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~ 83 (293)
T 3grk_A 15 QTQGPGSMTAQS--GLLQGKRGLILGVANNRSIAWGIAKAAREA-------GAELAFTYQGDALKKRVEPLAEELG--AF 83 (293)
T ss_dssp --------------CTTTTCEEEEECCCSSSSHHHHHHHHHHHT-------TCEEEEEECSHHHHHHHHHHHHHHT--CE
T ss_pred cccCCCCCCccc--ccCCCCEEEEEcCCCCCcHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC--Cc
Confidence 345555554332 1234778888887754 4667777776652 3478889998766666655555554 45
Q ss_pred EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCC----CCcc-ccChhhhhhcccccccchHHHH
Q 004775 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG----DGTL-RKAPDIWRKWNVGLGNGLHSLQ 214 (731)
Q Consensus 140 ~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG----dGtl-rk~pd~~~~w~~~~~~~L~~lQ 214 (731)
.+...|..+...+.- ............|.++..+--.. .+.+ ...++.|.+ ....++ .-.
T Consensus 84 ~~~~~Dv~d~~~v~~-----------~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~---~~~~N~-~g~ 148 (293)
T 3grk_A 84 VAGHCDVADAASIDA-----------VFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTN---TMLISV-YSL 148 (293)
T ss_dssp EEEECCTTCHHHHHH-----------HHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHH---HHHHHT-HHH
T ss_pred eEEECCCCCHHHHHH-----------HHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHH---HHHHHH-HHH
Confidence 666677655321110 00001112246898887553221 1111 112222322 111111 123
Q ss_pred HHHHHHHHhhccCCCEEEEEe
Q 004775 215 VQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~LVYST 235 (731)
..+++.++..++.+|+||+.+
T Consensus 149 ~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 149 TAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEEe
Confidence 456777788888899999864
No 394
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=69.97 E-value=22 Score=35.63 Aligned_cols=132 Identities=8% Similarity=0.017 Sum_probs=74.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid------------~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
|.+||=.+| .|+...+++..|... ...|+.+|.+ ..++..+...+...+ .++.+...|.
T Consensus 10 gk~vlVTGa-s~gIG~~ia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~ 80 (287)
T 3pxx_A 10 DKVVLVTGG-ARGQGRSHAVKLAEE-------GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDV 80 (287)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCT
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC-------CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccC
Confidence 566775555 466778888877653 3578999987 777777777666655 3566677776
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004775 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (731)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (731)
.+...+.- ............|.++..+--...+ ....++.|... ...++ .-...+++.++..++
T Consensus 81 ~~~~~v~~-----------~~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~ 144 (287)
T 3pxx_A 81 RDRAAVSR-----------ELANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADA---FDVDF-VGVINTVHAALPYLT 144 (287)
T ss_dssp TCHHHHHH-----------HHHHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHH---HHHHT-HHHHHHHHHHGGGCC
T ss_pred CCHHHHHH-----------HHHHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHH---hhhhh-hhhHHHHHHHHHHhh
Confidence 55321100 0000011124689998866433333 11223333321 11111 123456778888888
Q ss_pred CCCEEEEEe
Q 004775 227 VGGRIVYST 235 (731)
Q Consensus 227 pGG~LVYST 235 (731)
.+|+||+.+
T Consensus 145 ~~g~iv~is 153 (287)
T 3pxx_A 145 SGASIITTG 153 (287)
T ss_dssp TTCEEEEEC
T ss_pred cCcEEEEec
Confidence 899999864
No 395
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=69.37 E-value=11 Score=40.11 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 77 QPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 77 ~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
++|++||=.+|+ -|..++|+|..++ ..|++.. +..|++++ +++|...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G----------a~Vi~~~-~~~~~~~~----~~lGa~~ 211 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG----------YIPIATC-SPHNFDLA----KSRGAEE 211 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT----------CEEEEEE-CGGGHHHH----HHTTCSE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC----------CEEEEEe-CHHHHHHH----HHcCCcE
Confidence 899999988884 5777777777643 3677774 78887654 4577643
No 396
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=68.99 E-value=17 Score=38.16 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=34.7
Q ss_pred cCCCCCCEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|++||=.+| +-|..++|+|..++ ...|+..+.+.++.+.+ ..++.+|...
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~G---------a~vi~~~~~~~~~~~~~-~~~~~lGa~~ 219 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAALG---------LRTINVVRDRPDIQKLS-DRLKSLGAEH 219 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT---------CEEEEEECCCSCHHHHH-HHHHHTTCSE
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHcC---------CEEEEEecCccchHHHH-HHHHhcCCcE
Confidence 47889999999887 34667788887753 24556666654432211 2345678654
No 397
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=68.86 E-value=18 Score=36.04 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred CCCEEEeeccCcc-hHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.+.+||=.+|+ | +...+++..|... ...|+.+|.+..++..+...++..+..++.+...|..+...+.-
T Consensus 21 ~~k~vlITGas-g~GIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~-- 90 (266)
T 3o38_A 21 KGKVVLVTAAA-GTGIGSTTARRALLE-------GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDA-- 90 (266)
T ss_dssp TTCEEEESSCS-SSSHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHH--
T ss_pred CCCEEEEECCC-CCchHHHHHHHHHHC-------CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHH--
Confidence 36677766663 3 4566777766552 35799999999999888888876665678888887765322110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhcc---CCCEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLK---VGGRIV 232 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK---pGG~LV 232 (731)
...........+|.++..+--+..+.+.. .++.|..--.. ++ .-...+++.++..++ .+|+||
T Consensus 91 ---------~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~---n~-~~~~~l~~~~~~~~~~~~~~~~iv 157 (266)
T 3o38_A 91 ---------LITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNV---TL-TSVMRATRAALRYFRGVDHGGVIV 157 (266)
T ss_dssp ---------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH---HT-HHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred ---------HHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHH---Hh-HHHHHHHHHHHHHHHhcCCCeEEE
Confidence 00000111246899998664433333221 22333321111 11 112344555555553 568888
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
+.+
T Consensus 158 ~~s 160 (266)
T 3o38_A 158 NNA 160 (266)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 398
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=68.67 E-value=9.6 Score=40.03 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=34.5
Q ss_pred cCCCCC--CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 74 LDVQPD--HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 74 Ld~~pg--~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
..+++| ++||-.+|+ |+....+++++... +.+.|++.|.+..|++.+.+ .+|..
T Consensus 154 ~~~~~g~~~~vlI~Gas-ggiG~~~~~~a~~~------Ga~~Vi~~~~~~~~~~~~~~---~~g~~ 209 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAA-GACGSVAGQIGHFL------GCSRVVGICGTHEKCILLTS---ELGFD 209 (357)
T ss_dssp SCCCTTSCCEEEESSTT-BHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHH---TSCCS
T ss_pred cCCCCCCccEEEEECCC-cHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHH---HcCCc
Confidence 468899 999988873 34444444444321 12389999999988876643 25653
No 399
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=68.01 E-value=5.2 Score=42.23 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=35.0
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCC
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~ 239 (731)
.+||.|++|||.... .+.|.. .......-...|..+.++|++||.|+.. |+.+
T Consensus 57 ~svDlI~tDPPY~~~------~d~~~~-----~~~~~~~~~~~l~~~~rvLk~~G~i~i~-~~~~ 109 (319)
T 1eg2_A 57 DSVQLIICDPPYNIM------LADWDD-----HMDYIGWAKRWLAEAERVLSPTGSIAIF-GGLQ 109 (319)
T ss_dssp TCEEEEEECCCSBCC------GGGGGT-----CSSHHHHHHHHHHHHHHHEEEEEEEEEE-ECSC
T ss_pred CCcCEEEECCCCCCC------CCCccC-----HHHHHHHHHHHHHHHHHHcCCCeEEEEE-cCcc
Confidence 579999999997432 122221 1223344566778889999999998776 5543
No 400
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=67.44 E-value=21 Score=36.55 Aligned_cols=62 Identities=6% Similarity=0.017 Sum_probs=45.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.|.+||=.+|+ |+...+++..|... ...|++.+.+..++..+...+...+. ++.+...|..+
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 91 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARR-------GARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRH 91 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 46677766655 66778888877653 35799999999999888887776553 46666677665
No 401
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=67.01 E-value=10 Score=39.92 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=33.0
Q ss_pred cCCCCC-CEEEeecc--CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPD-HFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg-~~VLDmCA--APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++| ++||=.+| +-|..++|+|..++ ..|++...+...+......++.+|...
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G----------a~vi~~~~~~~~~~~~~~~~~~lGa~~ 219 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN----------FNSISVIRDRPNLDEVVASLKELGATQ 219 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT----------CEEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCC----------CEEEEEecCccccHHHHHHHHhcCCeE
Confidence 368899 99998876 34556777777653 356676654443222222345678654
No 402
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=66.68 E-value=3 Score=43.99 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=27.5
Q ss_pred cCCCCCCEEEeeccC-c-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004775 74 LDVQPDHFVLDMCAA-P-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (731)
Q Consensus 74 Ld~~pg~~VLDmCAA-P-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L 127 (731)
.++++|++||=.+|+ + |..++|+|..++ ...|++.+ +..+...+
T Consensus 138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g---------~~~V~~~~-~~~~~~~~ 183 (349)
T 4a27_A 138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVP---------NVTVFGTA-STFKHEAI 183 (349)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHTTST---------TCEEEEEE-CGGGHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC---------CcEEEEeC-CHHHHHHH
Confidence 468899999988873 2 444455544321 35788887 45555443
No 403
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=65.98 E-value=3.9 Score=42.96 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=38.8
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcc-cccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHH
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWN-VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~-~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~ 252 (731)
.++|+||+|+.-.-.|. ++. -.+ ....++. ++.-|+++|+|||.+|--.-...--.-|.++..+.+
T Consensus 205 ~k~DvV~SDMApn~sGh---------~yqQC~D--Harii~L-al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR 271 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYH---------HYQQCED--HAIKLSM-LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIAR 271 (320)
T ss_dssp CCEEEEEEECCCCCCSC---------HHHHHHH--HHHHHHH-THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHT
T ss_pred CcCCEEEEcCCCCCCCc---------cccccch--HHHHHHH-HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHH
Confidence 67999999986444442 000 001 1112333 889999999999999966444422234555554444
No 404
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=65.70 E-value=74 Score=31.74 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=46.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||= .-|.|+...+++..|... ...|++.+.+..++..+...++..+..++.+...|...
T Consensus 12 ~k~vlI-TGas~GIG~~~a~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~ 73 (311)
T 3o26_A 12 RRCAVV-TGGNKGIGFEICKQLSSN-------GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD 73 (311)
T ss_dssp CCEEEE-SSCSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS
T ss_pred CcEEEE-ecCCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC
Confidence 556664 445577888888887652 35899999999998888888776665677777777665
No 405
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=64.33 E-value=14 Score=39.18 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCCCEEEeeccC--cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 76 VQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 76 ~~pg~~VLDmCAA--PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
+++|++||=.+|+ -|..++|+|..++ ..|++.+ +..|.+.+ +.+|..
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G----------a~Vi~~~-~~~~~~~~----~~lGa~ 229 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD----------AHVTAVC-SQDASELV----RKLGAD 229 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEEE-CGGGHHHH----HHTTCS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC----------CEEEEEe-ChHHHHHH----HHcCCC
Confidence 8899999988742 3444556655432 4788888 66776554 457764
No 406
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=63.69 E-value=20 Score=35.39 Aligned_cols=135 Identities=7% Similarity=-0.021 Sum_probs=72.4
Q ss_pred CCCCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004775 77 QPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (731)
Q Consensus 77 ~pg~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~ 155 (731)
..+.+||=.+|+ .|+...+++..|... ...|+.++.+......+....+..+ .+.+...|..+...+.-
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~- 81 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKRE-------GAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDA- 81 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHH-
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHc-------CCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHH-
Confidence 457788877774 377788888887653 3478899888665555555445544 35556666654321110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCC----Cccc--cChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004775 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR--KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (731)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtlr--k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (731)
............|.++..+--... +.+. ..++.|..- ...++ .-...+++.++..++.+|
T Consensus 82 ----------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~---~~~n~-~~~~~l~~~~~~~~~~~g 147 (271)
T 3ek2_A 82 ----------LFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIA---HDISA-YSFPALAKAALPMLSDDA 147 (271)
T ss_dssp ----------HHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHH---HHHHT-THHHHHHHHHGGGEEEEE
T ss_pred ----------HHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHH---HhhhH-HHHHHHHHHHHHHhccCc
Confidence 000011122468988875532221 1111 122222221 00111 123456777788888889
Q ss_pred EEEEEe
Q 004775 230 RIVYST 235 (731)
Q Consensus 230 ~LVYST 235 (731)
+||+.+
T Consensus 148 ~iv~is 153 (271)
T 3ek2_A 148 SLLTLS 153 (271)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 988764
No 407
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=62.67 E-value=32 Score=34.80 Aligned_cols=62 Identities=3% Similarity=-0.108 Sum_probs=43.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+ |.|+...+++..|... ...|+++|.+..++..+...+...+...+.+...|..+
T Consensus 33 gk~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 94 (281)
T 4dry_A 33 GRIALVTG-GGTGVGRGIAQALSAE-------GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD 94 (281)
T ss_dssp -CEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC
Confidence 55666544 5577788888887652 35899999999998888887765554445666777665
No 408
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=62.27 E-value=19 Score=35.88 Aligned_cols=131 Identities=7% Similarity=0.066 Sum_probs=73.5
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
.|.+||=.+| .|+...+++..|... ...|+.+|.+..++..+.+.+ + .++.+...|..+...+.-
T Consensus 7 ~gk~~lVTGa-s~gIG~a~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~--- 71 (255)
T 4eso_A 7 QGKKAIVIGG-THGMGLATVRRLVEG-------GAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAV--- 71 (255)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHH---
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHH---
Confidence 3567776665 566778888877652 358999999998887766554 2 356666777655321110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...........+|.++..+-.+..+.+.. .++.|.+ ....++ .-...+++.++.+++.+|+||+.+
T Consensus 72 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 72 --------LGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDR---QFAVNT-KGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp --------HHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHH---HHHHhh-HHHHHHHHHHHHHHhcCCEEEEEC
Confidence 00000112246898887654433333222 2333332 111111 123456777888888899999863
No 409
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=61.61 E-value=38 Score=33.60 Aligned_cols=133 Identities=9% Similarity=0.030 Sum_probs=72.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
|.+||=.+ |.|+...+++..|... ...|+.+|.+..++..+.+.++..+. .+.+...|..+...+.-
T Consensus 12 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~---- 78 (256)
T 3gaf_A 12 DAVAIVTG-AAAGIGRAIAGTFAKA-------GASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREA---- 78 (256)
T ss_dssp TCEEEECS-CSSHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHH----
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHH----
Confidence 55666555 4566777787777652 34799999999999888888776653 46666677655221100
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc--CCCEEEEEe
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK--VGGRIVYST 235 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK--pGG~LVYST 235 (731)
............|.++..+--...+.+...++.|.+- -..++. -...+++.++..++ .+|+||+.+
T Consensus 79 -------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~---~~vN~~-g~~~l~~~~~~~~~~~~~g~iv~is 146 (256)
T 3gaf_A 79 -------VIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWA---FKLNLF-SLFRLSQLAAPHMQKAGGGAILNIS 146 (256)
T ss_dssp -------HHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHH---HHHHTH-HHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred -------HHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHH---HHHHhH-HHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 0000011124689998866443333332233334321 111111 12334555555543 368888753
No 410
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=61.04 E-value=77 Score=34.80 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=72.4
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH------------HHc-CCCceEEEecccccCCCccc
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT------------KRM-CTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~------------kRl-g~~ni~vt~~Da~~fp~~~~ 154 (731)
|.|+..+-+|..|... .-.|+++|+++.+++.|.... ++. ...++.++. |
T Consensus 18 GlGyvGlp~A~~La~~-------G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt-d--------- 80 (431)
T 3ojo_A 18 GLGYIGLPTSIMFAKH-------GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST-T--------- 80 (431)
T ss_dssp CCSTTHHHHHHHHHHT-------TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES-S---------
T ss_pred eeCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC-c---------
Confidence 5566666777766542 237999999999999886520 100 011222221 1
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
...-|.|++=+|-..+..-.+.||+ ..+ ........+.|++|..+|+.
T Consensus 81 -------------------~~~aDvvii~VpTp~~~~~~~~~Dl------------~~V-~~~~~~i~~~l~~g~iVV~~ 128 (431)
T 3ojo_A 81 -------------------PEASDVFIIAVPTPNNDDQYRSCDI------------SLV-MRALDSILPFLKKGNTIIVE 128 (431)
T ss_dssp -------------------CCCCSEEEECCCCCBCSSSSCBBCC------------HHH-HHHHHHHGGGCCTTEEEEEC
T ss_pred -------------------hhhCCEEEEEeCCCccccccCCccH------------HHH-HHHHHHHHHhCCCCCEEEEe
Confidence 1246888887763221100012221 111 22345566788987777765
Q ss_pred eCCCCCcCcHHHHHHHHHHCCC----cEEEEec
Q 004775 235 TCSMNPVENEAVVAEILRKCEG----SVELVDV 263 (731)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~g----~~elvd~ 263 (731)
.|+.|.-.+.+...+++..+. .|.+++.
T Consensus 129 -STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~ 160 (431)
T 3ojo_A 129 -STIAPKTMDDFVKPVIENLGFTIGEDIYLVHC 160 (431)
T ss_dssp -SCCCTTHHHHTHHHHHHTTTCCBTTTEEEEEC
T ss_pred -cCCChhHHHHHHHHHHHHcCCCcCCCeEEEEC
Confidence 488888889988888875442 3677766
No 411
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=60.90 E-value=40 Score=34.02 Aligned_cols=63 Identities=6% Similarity=0.068 Sum_probs=43.1
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~f 149 (731)
.+.+||=.+| .|+...++++.|... ...|+.+|. +..++..+...+...+. .+.+...|..+.
T Consensus 28 ~~k~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~ 91 (280)
T 4da9_A 28 ARPVAIVTGG-RRGIGLGIARALAAS-------GFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADL 91 (280)
T ss_dssp CCCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSG
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC-------CCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCH
Confidence 3556665554 566778888877652 347888885 78888877777766653 566777777653
No 412
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=60.57 E-value=46 Score=35.55 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=44.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC---TANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg---~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...++++.|... +...|+++|.+...+..+.+.+.... ..++.+...|..+
T Consensus 35 ~k~vLVTG-atG~IG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d 100 (399)
T 3nzo_A 35 QSRFLVLG-GAGSIGQAVTKEIFKR------NPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGS 100 (399)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHTT------CCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECCCTTS
T ss_pred CCEEEEEc-CChHHHHHHHHHHHHC------CCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEEEeCCC
Confidence 56777555 5688999999988752 11389999999999888777765432 1456777666554
No 413
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=60.30 E-value=30 Score=34.34 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=72.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEecccccCCCcccCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--CTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl--g~~ni~vt~~Da~~fp~~~~~~ 156 (731)
+.+||=.+| .|+....+++.|... ...|+.++.+..++..+...+... +...+.+...|..+...+.-
T Consensus 7 ~k~~lVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~-- 76 (250)
T 3nyw_A 7 KGLAIITGA-SQGIGAVIAAGLATD-------GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADT-- 76 (250)
T ss_dssp CCEEEEEST-TSHHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHH--
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHH--
Confidence 455665554 566777888777652 358999999999998888887665 32456677777665321100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc--cCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL--KVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL--KpGG~LVYS 234 (731)
............|.++..+--...+.+...++.|.+- ...++. -...+++.++..+ +.+|+||+.
T Consensus 77 ---------~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~---~~vN~~-g~~~l~~~~~~~~~~~~~g~iv~i 143 (250)
T 3nyw_A 77 ---------EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKI---MEINVI-AQYGILKTVTEIMKVQKNGYIFNV 143 (250)
T ss_dssp ---------HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHH---HHHHTH-HHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ---------HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHH---HHHHHH-HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0000011124689888866443334442222333321 111111 1233455555554 346888875
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
+
T Consensus 144 s 144 (250)
T 3nyw_A 144 A 144 (250)
T ss_dssp C
T ss_pred c
Confidence 3
No 414
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=60.17 E-value=13 Score=38.92 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=29.8
Q ss_pred CCCC-EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004775 77 QPDH-FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (731)
Q Consensus 77 ~pg~-~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ 137 (731)
++|+ +|| +.+|.|+....+++++... ...|++.|.+..|++.++ ++|..
T Consensus 162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~-------Ga~Vi~~~~~~~~~~~~~----~~Ga~ 211 (349)
T 3pi7_A 162 QEGEKAFV-MTAGASQLCKLIIGLAKEE-------GFRPIVTVRRDEQIALLK----DIGAA 211 (349)
T ss_dssp HHCCSEEE-ESSTTSHHHHHHHHHHHHH-------TCEEEEEESCGGGHHHHH----HHTCS
T ss_pred hCCCCEEE-EeCCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHH----HcCCC
Confidence 5664 555 5555555544444433321 248999999999987764 46754
No 415
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=58.94 E-value=42 Score=33.41 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=72.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR-lg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=-+| .|+....++..|... ...|+.+|.+..++..+...+.. .+..++.+...|..+...+.-
T Consensus 8 ~k~~lVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~--- 76 (265)
T 3lf2_A 8 EAVAVVTGG-SSGIGLATVELLLEA-------GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRA--- 76 (265)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH---
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHH---
Confidence 556665554 566778888877652 34799999999999888887765 444457777777665322110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccC--CCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV--GGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp--GG~LVYS 234 (731)
............|.++..+--+..+.+. ..++.|.+ ....++. -...+++.++..++. +|+||+.
T Consensus 77 --------~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~---~~~~N~~-g~~~~~~~~~~~~~~~~~g~iv~i 144 (265)
T 3lf2_A 77 --------FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSE---ELQLKFF-SVIHPVRAFLPQLESRADAAIVCV 144 (265)
T ss_dssp --------HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHH---HHHHHHH-HHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHH---HHHHHHH-HHHHHHHHHHHHhhccCCeEEEEE
Confidence 0000011124689888855433333222 12233332 1111111 123455666665543 5788765
No 416
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=58.59 E-value=1.4e+02 Score=29.57 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=42.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRl-g~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|.|+...+++..|... ...|++++. +..++..+...+... + .++.+...|...
T Consensus 11 ~k~~l-VTGas~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 73 (276)
T 1mxh_A 11 CPAAV-ITGGARRIGHSIAVRLHQQ-------GFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSL 73 (276)
T ss_dssp CCEEE-ETTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSS
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCC
Confidence 45666 4555677888888888652 347999999 888888777766554 3 356666677655
No 417
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=58.40 E-value=47 Score=33.01 Aligned_cols=62 Identities=5% Similarity=0.049 Sum_probs=45.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+ |.|+...+++..|... ...|+.+|.+..++..+...++..+..++.+...|..+
T Consensus 10 ~k~vlVTG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~ 71 (262)
T 3pk0_A 10 GRSVVVTG-GTKGIGRGIATVFARA-------GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD 71 (262)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC
Confidence 55666555 4567788888877652 34899999999999888888776665567777777665
No 418
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=58.20 E-value=39 Score=33.38 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=42.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
|.+||=.+| .|+....++..|... ...|+.+|.+..++..+...+...+...+.+...|.
T Consensus 12 ~k~vlVTGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~ 71 (252)
T 3f1l_A 12 DRIILVTGA-SDGIGREAAMTYARY-------GATVILLGRNEEKLRQVASHINEETGRQPQWFILDL 71 (252)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCT
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 556665554 566777888877652 358999999999998888777665544555566665
No 419
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=57.71 E-value=69 Score=33.02 Aligned_cols=62 Identities=5% Similarity=0.029 Sum_probs=45.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
|.+||=.+| .|+...+++..|... .-.|++.+.+..++..+...+...+. .++.+...|..+
T Consensus 8 ~k~vlVTGa-s~gIG~~la~~l~~~-------G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 70 (319)
T 3ioy_A 8 GRTAFVTGG-ANGVGIGLVRQLLNQ-------GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS 70 (319)
T ss_dssp TCEEEEETT-TSTHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC
T ss_pred CCEEEEcCC-chHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence 556776565 477788888887652 34799999999999888888776654 257777777665
No 420
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=56.43 E-value=62 Score=31.41 Aligned_cols=61 Identities=7% Similarity=0.138 Sum_probs=42.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||= .-|.|+...+++..|... ...|++++.+..++..+...++..+. ++.+...|..+
T Consensus 11 ~~~vlV-tGasggiG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 71 (255)
T 1fmc_A 11 GKCAII-TGAGAGIGKEIAITFATA-------GASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITS 71 (255)
T ss_dssp TCEEEE-TTTTSHHHHHHHHHHHTT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEE-ECCccHHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCC
Confidence 556664 445688888888888652 34799999999988877777765543 45666666554
No 421
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=56.32 E-value=7.9 Score=40.25 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.0
Q ss_pred HHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 217 IAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 217 IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
+-..|+.+|+|||.+|...--+----.|.||.++-++
T Consensus 241 L~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARk 277 (324)
T 3trk_A 241 LGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRK 277 (324)
T ss_dssp HHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhh
Confidence 5568999999999999998888888889999887765
No 422
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=56.09 E-value=60 Score=32.33 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|.+||=.+| .|+....++..|... ...|+..+. +..+...+...++..+. ++.+...|..+...+.-
T Consensus 18 ~k~~lVTGa-s~gIG~aia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~--- 85 (270)
T 3is3_A 18 GKVALVTGS-GRGIGAAVAVHLGRL-------GAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVK--- 85 (270)
T ss_dssp TCEEEESCT-TSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHH---
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHH---
Confidence 566665554 566778888877652 346777665 56777777777776653 45666677665322110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
............|.++..+--...+.+.. .++.|.+ ....++ .-...+++.++..++.+|+||+.+.
T Consensus 86 --------~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 86 --------LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDR---VFSLNT-RGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp --------HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHH---HHHHHh-HHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 00000111246788887554333332221 2233332 111111 1234567778888888999998644
No 423
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=55.53 E-value=73 Score=31.71 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...++..+. ..+.+...|..+
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 94 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQ-------GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 94 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC
Confidence 55666555 5677788888877652 34799999999998888777776664 346666677654
No 424
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=54.93 E-value=62 Score=36.06 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHH-HHCC----CcEEEEec
Q 004775 217 IAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL-RKCE----GSVELVDV 263 (731)
Q Consensus 217 IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L-~~~~----g~~elvd~ 263 (731)
.+....+.|++|..+|+. .|+.|.-.+.+...++ +..+ ..+.+++.
T Consensus 129 ~~~~i~~~l~~g~iVV~~-STv~pgtt~~v~~~ile~~~g~~~~~d~~v~~~ 179 (478)
T 3g79_A 129 GIRNVGKYLKPGMLVVLE-STITPGTTEGMAKQILEEESGLKAGEDFALAHA 179 (478)
T ss_dssp HHHHHHHHCCTTCEEEEC-SCCCTTTTTTHHHHHHHHHHCCCBTTTBEEEEC
T ss_pred HHHHHHhhcCCCcEEEEe-CCCChHHHHHHHHHHHHHhcCCCcCCceeEEeC
Confidence 345556778998777765 4889999999988888 4333 24677776
No 425
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=54.84 E-value=73 Score=31.70 Aligned_cols=133 Identities=9% Similarity=0.021 Sum_probs=72.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kR-lg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|.+||=.+ |.|+...+++..|... ...|+.++.+..++..+...+.. .+ ..+.+...|..+...+.-
T Consensus 20 ~k~vlVTG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~--- 87 (266)
T 4egf_A 20 GKRALITG-ATKGIGADIARAFAAA-------GARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAE--- 87 (266)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHH---
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHH---
Confidence 55666545 4567788888887653 35799999999998888777765 33 356777777765432210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhcc---CCCEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK---VGGRIVY 233 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK---pGG~LVY 233 (731)
............|.++..+--...+.+. ..++.|.+--. .++. -...+++.++..++ .+|+||+
T Consensus 88 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~---~N~~-g~~~l~~~~~~~~~~~~~~g~iv~ 155 (266)
T 4egf_A 88 --------LARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIA---VNLR-APALLASAVGKAMVAAGEGGAIIT 155 (266)
T ss_dssp --------HHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHH---HHTH-HHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHH---HHhH-HHHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000111124689998866433333322 22333332111 1111 12234444444443 3688888
Q ss_pred Ee
Q 004775 234 ST 235 (731)
Q Consensus 234 ST 235 (731)
.+
T Consensus 156 is 157 (266)
T 4egf_A 156 VA 157 (266)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 426
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=53.10 E-value=32 Score=35.24 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=44.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||= .-|.|+....++..|... ...|+.+|.+..++..+...++..+..++.+...|..+
T Consensus 41 ~k~vlV-TGas~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 102 (293)
T 3rih_A 41 ARSVLV-TGGTKGIGRGIATVFARA-------GANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD 102 (293)
T ss_dssp TCEEEE-TTTTSHHHHHHHHHHHHT-------TCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC
T ss_pred CCEEEE-eCCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC
Confidence 456664 445677788888887652 34899999999988888777766654567777777665
No 427
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=52.86 E-value=51 Score=33.11 Aligned_cols=134 Identities=9% Similarity=0.056 Sum_probs=66.4
Q ss_pred CCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.|.+||=.+|+. |+...+++..|... ...|++++.+......+.+.....+ ++.+...|..+...+.-
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~-- 88 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHRE-------GAQLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKN-- 88 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHH--
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHH--
Confidence 366788777763 77888888887652 3478899988752222222222233 24455566554221100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhcc-CCCE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGR 230 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK-pGG~ 230 (731)
...........+|.|+..+--... +.+ ...++.|... ...++. -...+++.++..++ .+|+
T Consensus 89 ---------~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~---~~~N~~-g~~~l~~~~~~~~~~~~g~ 155 (285)
T 2p91_A 89 ---------LKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIA---MDISVY-SLIALTRELLPLMEGRNGA 155 (285)
T ss_dssp ---------HHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHH---HHHHTH-HHHHHHHHHGGGGTTSCCE
T ss_pred ---------HHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHH---HHHhhH-HHHHHHHHHHHHHHHcCCE
Confidence 000001112468999886532221 111 1122333221 111111 12345666777665 6789
Q ss_pred EEEEe
Q 004775 231 IVYST 235 (731)
Q Consensus 231 LVYST 235 (731)
||+.+
T Consensus 156 iv~is 160 (285)
T 2p91_A 156 IVTLS 160 (285)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98764
No 428
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=52.70 E-value=55 Score=33.21 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=71.3
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHH-HHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R-~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.|.+||=.+| .|+...+++..|... ...|+.++.+... ...+...++..+ ..+.+...|..+...+.-
T Consensus 46 ~gk~vlVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~-- 114 (291)
T 3ijr_A 46 KGKNVLITGG-DSGIGRAVSIAFAKE-------GANIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKD-- 114 (291)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHH--
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHH--
Confidence 3567776665 566778888877652 3478888887653 444444444444 356667777655321100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCC-CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG-dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
............|.++..+--.. .+.+. ..++.|.+ ....++ .-...+++.++..++.+|+||+.
T Consensus 115 ---------~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~---~~~vN~-~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 115 ---------IVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEK---TFRINI-FSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp ---------HHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHH---HHHHHT-HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred ---------HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHH---HHHHHh-HHHHHHHHHHHHHHhhCCEEEEE
Confidence 00001112246898887553221 11111 12333332 111111 12345778888888889999986
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
+
T Consensus 182 s 182 (291)
T 3ijr_A 182 A 182 (291)
T ss_dssp C
T ss_pred e
Confidence 4
No 429
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=52.31 E-value=98 Score=30.01 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=44.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...++..+. .+.+...|..+
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASK-------GATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISD 65 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCC
Confidence 44566444 5677788888887763 35899999999999888888877653 46666677655
No 430
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=51.74 E-value=41 Score=33.97 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=47.1
Q ss_pred cCccccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004775 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (731)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt 142 (731)
|.+.+|-....+++ .|.+||=.+| .|+...+++..|... ...|+.++.+..++..+...+...+. ++.+.
T Consensus 17 ~g~~~m~~~~~~~l-~gk~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~ 86 (276)
T 3r1i_A 17 QGPGSMSVLDLFDL-SGKRALITGA-STGIGKKVALAYAEA-------GAQVAVAARHSDALQVVADEIAGVGG-KALPI 86 (276)
T ss_dssp ------CGGGGGCC-TTCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEESSGGGGHHHHHHHHHTTC-CCEEE
T ss_pred cCCCCcccccccCC-CCCEEEEeCC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEE
Confidence 34455543333343 3566775555 567778888877652 35899999999998888888776653 45666
Q ss_pred eccccc
Q 004775 143 NHEAQH 148 (731)
Q Consensus 143 ~~Da~~ 148 (731)
..|..+
T Consensus 87 ~~Dl~d 92 (276)
T 3r1i_A 87 RCDVTQ 92 (276)
T ss_dssp ECCTTC
T ss_pred EcCCCC
Confidence 677655
No 431
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=50.56 E-value=66 Score=31.78 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=44.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+....++..|... ...|+++|.+..++..+...++..+. ++.+...|..+
T Consensus 7 ~k~vlVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 67 (252)
T 3h7a_A 7 NATVAVIGA-GDYIGAEIAKKFAAE-------GFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARN 67 (252)
T ss_dssp SCEEEEECC-SSHHHHHHHHHHHHT-------TCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCC
Confidence 456665554 566778888877653 34899999999999988888877653 56677777665
No 432
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=49.24 E-value=69 Score=30.86 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=41.9
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+||=.+ |.|+...+++..|... ...|+..+.+..++..+.+.+......++.+...|..+
T Consensus 3 k~vlITG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (235)
T 3l77_A 3 KVAVITG-ASRGIGEAIARALARD-------GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK 63 (235)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC
Confidence 3455444 5677788888888753 34799999999999888877753222456677777665
No 433
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=48.55 E-value=97 Score=34.01 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=26.7
Q ss_pred CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 88 APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
|.|.....+|..|... .-.|+++|+++.+++.+..
T Consensus 9 G~G~vG~~lA~~La~~-------G~~V~~~D~~~~~v~~l~~ 43 (450)
T 3gg2_A 9 GIGYVGLVSATCFAEL-------GANVRCIDTDRNKIEQLNS 43 (450)
T ss_dssp CCSHHHHHHHHHHHHT-------TCEEEEECSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHHHc
Confidence 5577777777777652 2479999999999988765
No 434
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=48.53 E-value=1.3e+02 Score=29.96 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=42.1
Q ss_pred CcEEecCc--cccchhhhcCCCCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004775 58 GNITRQEA--VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (731)
Q Consensus 58 G~i~~Qd~--~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg 135 (731)
+.+.+|.. .+|....-+ .|.+||=.+ |.|+...+++..|... ...|+.+|.+..++..+...+ +
T Consensus 10 ~~~~~~~~gp~~m~~~~~l---~~k~vlVTG-as~GIG~aia~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~---~ 75 (281)
T 3ppi_A 10 GTLEAQTQGPGSMVTIKQF---EGASAIVSG-GAGGLGEATVRRLHAD-------GLGVVIADLAAEKGKALADEL---G 75 (281)
T ss_dssp --------------CCGGG---TTEEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---C
T ss_pred CCCCCcccCcchhhhhhcc---CCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHh---C
Confidence 44555543 444333222 356666555 4566778888877652 347999999999887776654 3
Q ss_pred CCceEEEeccccc
Q 004775 136 TANLIVTNHEAQH 148 (731)
Q Consensus 136 ~~ni~vt~~Da~~ 148 (731)
.++.+...|..+
T Consensus 76 -~~~~~~~~Dl~~ 87 (281)
T 3ppi_A 76 -NRAEFVSTNVTS 87 (281)
T ss_dssp -TTEEEEECCTTC
T ss_pred -CceEEEEcCCCC
Confidence 356777777665
No 435
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=47.94 E-value=88 Score=31.07 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=42.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEecc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHE 145 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid------------~~R~~~L~~n~kRlg~~ni~vt~~D 145 (731)
.|.+||=.+ |.|+...+++..|... ...|+++|.+ ..++..+...+...+. .+.+...|
T Consensus 12 ~gk~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 82 (278)
T 3sx2_A 12 TGKVAFITG-AARGQGRAHAVRLAAD-------GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQAD 82 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHT-------TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC-------CCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 356677555 4566778888877652 3578899987 7777777776666653 56667777
Q ss_pred ccc
Q 004775 146 AQH 148 (731)
Q Consensus 146 a~~ 148 (731)
..+
T Consensus 83 ~~~ 85 (278)
T 3sx2_A 83 VRD 85 (278)
T ss_dssp TTC
T ss_pred CCC
Confidence 665
No 436
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=47.62 E-value=1.3e+02 Score=29.74 Aligned_cols=62 Identities=8% Similarity=0.020 Sum_probs=44.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...+...+. ++.+...|..+
T Consensus 28 ~~k~vlITG-as~gIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 89 (262)
T 3rkr_A 28 SGQVAVVTG-ASRGIGAAIARKLGSL-------GARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSH 89 (262)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCC
Confidence 356677555 4577788888887653 34799999999999888888776653 56666777655
No 437
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=47.46 E-value=1.1e+02 Score=30.17 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=42.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
|.+||=-+ |.|+...+++..|... ...|+++|.+..++..+.+.+...+. ..+.....|...
T Consensus 10 ~k~~lVTG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~ 72 (267)
T 3t4x_A 10 GKTALVTG-STAGIGKAIATSLVAE-------GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT 72 (267)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC
Confidence 55666555 5577788888877652 35899999999998888877766542 345555566544
No 438
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=47.25 E-value=42 Score=33.55 Aligned_cols=133 Identities=9% Similarity=0.065 Sum_probs=66.9
Q ss_pred CCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+|+ +|+...+++..|... ...|++++.+......+.+.....+ .+.+...|..+...+.-
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~--- 73 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQ-------GATLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKS--- 73 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTT-------TCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHH---
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHH---
Confidence 5678877775 378888888888752 3478899988752222222222233 24555566554221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...........+|.++..+--... +.+ ...++.|.. ....++ .-...+++.++..++.+|+||
T Consensus 74 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~l~~~~~~~~~~~g~iv 141 (275)
T 2pd4_A 74 --------LYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNT---AMEISV-YSLIELTNTLKPLLNNGASVL 141 (275)
T ss_dssp --------HHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHGGGEEEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHH---HHHHHh-HHHHHHHHHHHHHhccCCEEE
Confidence 000001112468988875532211 111 112222322 111111 123456777778777789998
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
+.+
T Consensus 142 ~is 144 (275)
T 2pd4_A 142 TLS 144 (275)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 439
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=47.11 E-value=66 Score=32.66 Aligned_cols=133 Identities=10% Similarity=0.019 Sum_probs=71.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid--~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
|.+||=.+| .|+...+++..|... ...|+.++.+ ......+...++..+. ++.+...|..+...+.-
T Consensus 49 ~k~vlVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~-- 117 (294)
T 3r3s_A 49 DRKALVTGG-DSGIGRAAAIAYARE-------GADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARS-- 117 (294)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHH--
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHH--
Confidence 566776565 567788888877652 3478888876 3456666666665553 45566666554211100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCC-CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG-dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
............|.++..+--.. .+.+. -.++.|.+ ....++. -...+++.++..++.+|+||+.
T Consensus 118 ---------~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~---~~~vN~~-g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 118 ---------LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQ---TFAVNVF-ALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp ---------HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHH---HHHHHTH-HHHHHHHHHGGGCCTTCEEEEE
T ss_pred ---------HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHH---HHHHHhH-HHHHHHHHHHHHhhcCCEEEEE
Confidence 00000111246898887553211 12111 12333332 1111121 2345778888888889999986
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
+
T Consensus 185 s 185 (294)
T 3r3s_A 185 S 185 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 440
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=46.85 E-value=42 Score=33.29 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=66.2
Q ss_pred CCEEEeeccC-cchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+|+ .|+...+++..|... ...|++++.+......+.+.....+ .+.+...|..+...+.-
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~--- 75 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEA-------GAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDA--- 75 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHH-------TCEEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHH---
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHH---
Confidence 5678877776 377888888877652 3478899988752222222222233 24556666554221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LV 232 (731)
...........+|.|+..+--... +.+ ...++.|.+ ....++ .-...+++.++..++.+|+||
T Consensus 76 --------~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~l~~~~~~~~~~~g~iv 143 (261)
T 2wyu_A 76 --------LFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLL---ALEVSA-YSLVAVARRAEPLLREGGGIV 143 (261)
T ss_dssp --------HHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHTTTEEEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHH---HHHHhh-HHHHHHHHHHHHHhccCCEEE
Confidence 000000112368988875532211 111 112222322 111111 122456677777777678998
Q ss_pred EEe
Q 004775 233 YST 235 (731)
Q Consensus 233 YST 235 (731)
+.+
T Consensus 144 ~is 146 (261)
T 2wyu_A 144 TLT 146 (261)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 441
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=46.84 E-value=1e+02 Score=29.84 Aligned_cols=60 Identities=8% Similarity=-0.046 Sum_probs=44.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
|.+||=.+ |.|+...+++..|... ...|+..+.+..++..+...++..+...+.+...|.
T Consensus 14 ~k~vlITG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~ 73 (247)
T 3i1j_A 14 GRVILVTG-AARGIGAAAARAYAAH-------GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL 73 (247)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCT
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 56666555 4577788888887653 347999999999999998888877755555655554
No 442
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=46.82 E-value=1e+02 Score=30.81 Aligned_cols=62 Identities=5% Similarity=-0.026 Sum_probs=44.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+...+++..|... ...|+.+|.+..++..+...++..+.. .+.+...|..+
T Consensus 11 ~k~vlVTGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~ 74 (281)
T 3svt_A 11 DRTYLVTGG-GSGIGKGVAAGLVAA-------GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN 74 (281)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Confidence 556665555 567778888877652 357999999999998888887766542 56666677654
No 443
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=46.73 E-value=11 Score=39.32 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=28.3
Q ss_pred HHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
.+.|..|..+|+|||+|+.- |++..|+- .|..+++.
T Consensus 213 ~~~L~~a~~~L~~gGrl~vi--sfHSLEDR-iVK~~~~~ 248 (285)
T 1wg8_A 213 KEFLEQAAEVLAPGGRLVVI--AFHSLEDR-VVKRFLRE 248 (285)
T ss_dssp HHHHHHHHHHEEEEEEEEEE--ECSHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHH-HHHHHHHh
Confidence 46788999999999999765 67777865 45777775
No 444
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=46.28 E-value=71 Score=31.41 Aligned_cols=60 Identities=7% Similarity=-0.011 Sum_probs=40.7
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+...+. ++.+...|..+
T Consensus 3 k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 62 (256)
T 1geg_A 3 KVALVTG-AGQGIGKAIALRLVKD-------GFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSD 62 (256)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTS
T ss_pred CEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 3455444 5677788888887652 34799999999888877776665543 45666666554
No 445
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=46.20 E-value=85 Score=30.60 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=44.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++.|.+..++..+.+.++..+. .+.+...|..+
T Consensus 9 ~k~vlITG-as~giG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 69 (253)
T 3qiv_A 9 NKVGIVTG-SGGGIGQAYAEALARE-------GAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSD 69 (253)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTS
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 55666555 4577788888887753 35799999999999988888776553 46666677655
No 446
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=46.10 E-value=91 Score=31.20 Aligned_cols=135 Identities=7% Similarity=0.025 Sum_probs=73.8
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
.|.+||=.+| .|+....++..|... ...|+..+. +..++..+...++..+. .+.+...|..+...+.-
T Consensus 30 ~gk~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~-- 98 (271)
T 3v2g_A 30 AGKTAFVTGG-SRGIGAAIAKRLALE-------GAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQ-- 98 (271)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHH--
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHH--
Confidence 3566776665 466777888877652 346777754 56778777777776654 45666677654321100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
............|.++..+--...+.+.. .++.|.+ .-..++. -...+++.++..++.+|++|+.+
T Consensus 99 ---------~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~---~~~vN~~-g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 99 ---------AIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDE---VMAVNFR-APFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp ---------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTH-HHHHHHHHHHHHCCTTCEEEEEC
T ss_pred ---------HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHH---HHHHHhH-HHHHHHHHHHHHHhcCCEEEEEe
Confidence 00000111246899988664333333221 2233332 1111111 12456777888888899999874
Q ss_pred C
Q 004775 236 C 236 (731)
Q Consensus 236 C 236 (731)
.
T Consensus 166 S 166 (271)
T 3v2g_A 166 S 166 (271)
T ss_dssp C
T ss_pred C
Confidence 4
No 447
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=45.87 E-value=1.2e+02 Score=30.71 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=43.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~--ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..|... ...|++++.+..++..+...+...+.. ++.+...|..+
T Consensus 26 ~k~vlVTG-as~gIG~aia~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d 89 (297)
T 1xhl_A 26 GKSVIITG-SSNGIGRSAAVIFAKE-------GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE 89 (297)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC
Confidence 55666444 5677788888887652 347999999999888877777655432 56666777654
No 448
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=45.87 E-value=60 Score=35.78 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=68.8
Q ss_pred eccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH------------HHc-CCCceEEEecccccCCC
Q 004775 85 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT------------KRM-CTANLIVTNHEAQHFPG 151 (731)
Q Consensus 85 mCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~------------kRl-g~~ni~vt~~Da~~fp~ 151 (731)
..-|.|...+.+|..|... .-.|+++|+++.+++.|.... ++. ...++.++. |.
T Consensus 12 ~vIGlG~vG~~~A~~La~~-------G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~tt-d~----- 78 (446)
T 4a7p_A 12 AMIGTGYVGLVSGACFSDF-------GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTT-DL----- 78 (446)
T ss_dssp EEECCSHHHHHHHHHHHHT-------TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEES-CH-----
T ss_pred EEEcCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEEC-CH-----
Confidence 4557888888888887652 237999999999988776420 000 001222221 00
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCC---CCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004775 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG---DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (731)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSG---dGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (731)
...-...|.|++=+|-.. +| .||+ ..+ ...+....+.|++|
T Consensus 79 -------------------~ea~~~aDvvii~Vptp~~~~~~----~~Dl------------~~v-~~v~~~i~~~l~~g 122 (446)
T 4a7p_A 79 -------------------AEGVKDADAVFIAVGTPSRRGDG----HADL------------SYV-FAAAREIAENLTKP 122 (446)
T ss_dssp -------------------HHHHTTCSEEEECCCCCBCTTTC----CBCT------------HHH-HHHHHHHHHSCCSC
T ss_pred -------------------HHHHhcCCEEEEEcCCCCccccC----CccH------------HHH-HHHHHHHHHhcCCC
Confidence 001134688988766332 22 2332 111 23445566788987
Q ss_pred CEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 229 GRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 229 G~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
..+|+. .|+.|.-.+.+...+.+.
T Consensus 123 ~iVV~~-STv~pgtt~~l~~~l~e~ 146 (446)
T 4a7p_A 123 SVIVTK-STVPVGTGDEVERIIAEV 146 (446)
T ss_dssp CEEEEC-SCCCTTHHHHHHHHHHHH
T ss_pred CEEEEe-CCCCchHHHHHHHHHHHh
Confidence 777775 478888888776655544
No 449
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=45.70 E-value=79 Score=30.81 Aligned_cols=61 Identities=2% Similarity=-0.038 Sum_probs=37.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-RMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~k-Rlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..+...+...+. ..+ .++.+...|..+
T Consensus 14 ~k~vlITG-asggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~ 75 (265)
T 1h5q_A 14 NKTIIVTG-GNRGIGLAFTRAVAAA-------GANVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSN 75 (265)
T ss_dssp TEEEEEET-TTSHHHHHHHHHHHHT-------TEEEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCeEEEEeCcchhhHHHHHHHHHhcC-CeeEEEEeeCCC
Confidence 55666555 5678888888887752 3588999986554443333332 233 346666666654
No 450
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=44.90 E-value=93 Score=31.27 Aligned_cols=62 Identities=2% Similarity=0.097 Sum_probs=42.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=-+| .|+...+++..|... ...|+.+|. +..++..+...+.......+.+...|..+
T Consensus 25 ~k~~lVTGa-s~GIG~~ia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 87 (281)
T 3v2h_A 25 TKTAVITGS-TSGIGLAIARTLAKA-------GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK 87 (281)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHHHT-------TCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC
Confidence 556665554 566778888877653 347889998 67777777776665544567777777655
No 451
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=44.79 E-value=1.8e+02 Score=28.44 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=42.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+...+. ++.+...|..+
T Consensus 9 ~k~vlVTG-as~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 69 (260)
T 2ae2_A 9 GCTALVTG-GSRGIGYGIVEELASL-------GASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSS 69 (260)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 56677555 5677788888877652 34799999999988877776655543 45666666654
No 452
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=43.97 E-value=1.1e+02 Score=30.58 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=42.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..|... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 4 ~k~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 64 (264)
T 3tfo_A 4 DKVILITG-ASGGIGEGIARELGVA-------GAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTD 64 (264)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 44566545 4567778888877652 35799999999999988888776653 45566666654
No 453
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=43.89 E-value=30 Score=36.31 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=36.8
Q ss_pred cCCCCCCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004775 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (731)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~n 138 (731)
.++++|++||=.+||+ |..++|+|..+. ...|++.|.+..|++.++ .+|...
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~---------Ga~Vi~~~~~~~~~~~~~----~lGa~~ 234 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT---------PATVIALDVKEEKLKLAE----RLGADH 234 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHC---------CCEEEEEESSHHHHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHH----HhCCCE
Confidence 5788999999998853 334556655541 137999999999988764 477543
No 454
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=43.77 E-value=47 Score=32.93 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=65.3
Q ss_pred CCEEEeeccCc-chHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+|+. |+...+++..|... ...|++++.+......+.+.....+. ..+...|..+...+.-
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~--- 76 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHRE-------GAELAFTYQNDKLKGRVEEFAAQLGS--DIVLQCDVAEDASIDT--- 76 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHT-------TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEECCTTCHHHHHH---
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEEcCcHHHHHHHHHHHHhcCC--cEEEEccCCCHHHHHH---
Confidence 56788777753 78888888887652 34788899887222222222222332 2444555544211100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Cccc--cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR--KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGd----Gtlr--k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~L 231 (731)
...........+|.++..+-.... +.+. ..++.|.+ ....++ .-...+++.++..++.+|+|
T Consensus 77 --------~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~l~~~~~~~~~~~g~i 144 (265)
T 1qsg_A 77 --------MFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKI---AHDISS-YSFVAMAKACRSMLNPGSAL 144 (265)
T ss_dssp --------HHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHH---HHHHHT-HHHHHHHHHHGGGEEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHH---HHHHHh-HHHHHHHHHHHHHhccCCEE
Confidence 000001112468988875532221 1111 12222221 111111 12345677777777778999
Q ss_pred EEEe
Q 004775 232 VYST 235 (731)
Q Consensus 232 VYST 235 (731)
|+.+
T Consensus 145 v~is 148 (265)
T 1qsg_A 145 LTLS 148 (265)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8864
No 455
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=43.26 E-value=61 Score=32.50 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=42.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+| .|+....+++.|... ...|+..+.+..++..+...+....-.++.+...|..+
T Consensus 27 ~k~~lVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 88 (277)
T 4fc7_A 27 DKVAFITGG-GSGIGFRIAEIFMRH-------GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA 88 (277)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHTT-------TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 566775555 567788888887652 34899999999888777766654322456677777655
No 456
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=42.64 E-value=76 Score=31.48 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=44.4
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.|.+||=.+| .|+...+++..|... ...|+.+|.+..++..+...+...+. ++.+...|..+
T Consensus 10 ~~k~vlVTGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 71 (264)
T 3ucx_A 10 TDKVVVISGV-GPALGTTLARRCAEQ-------GADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITD 71 (264)
T ss_dssp TTCEEEEESC-CTTHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCcEEEEECC-CcHHHHHHHHHHHHC-------cCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 3667776565 456677777777652 35799999999999988888876653 46666777665
No 457
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=42.50 E-value=27 Score=39.84 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=32.5
Q ss_pred HHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHC
Q 004775 217 IAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (731)
Q Consensus 217 IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~ 254 (731)
|-..|+.+|+|||.+|.-.--+----.|.||.++-++.
T Consensus 251 l~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF 288 (670)
T 4gua_A 251 LSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKF 288 (670)
T ss_dssp HHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTE
T ss_pred HhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhhe
Confidence 55689999999999999888888888899998887754
No 458
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=42.41 E-value=1.2e+02 Score=30.57 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=41.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid------------~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
|.+||=.+|+ |+....++..|... ...|+++|.+ ..++..+...+...+. ++.+...|.
T Consensus 28 gk~~lVTGas-~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv 98 (299)
T 3t7c_A 28 GKVAFITGAA-RGQGRSHAITLARE-------GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDV 98 (299)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHT-------TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCT
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHC-------CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCC
Confidence 5667755554 56677788777652 3578899887 7777777777766653 566777776
Q ss_pred cc
Q 004775 147 QH 148 (731)
Q Consensus 147 ~~ 148 (731)
.+
T Consensus 99 ~~ 100 (299)
T 3t7c_A 99 RD 100 (299)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 459
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=42.32 E-value=1.6e+02 Score=29.15 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=43.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|+++|.+..++..+...++..+. ++.+...|..+
T Consensus 31 ~k~vlITG-asggIG~~la~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 91 (272)
T 1yb1_A 31 GEIVLITG-AGHGIGRLTAYEFAKL-------KSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSN 91 (272)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCC
Confidence 55666555 5677888888887653 35799999999988887777766553 56666677654
No 460
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=42.31 E-value=2.7e+02 Score=27.75 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=41.9
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-eccccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT-NHEAQH 148 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt-~~Da~~ 148 (731)
.+.+||=.+ |.|....+++..|... .-.|++.+.+..+...+...+......++.+. ..|..+
T Consensus 10 ~~~~vlVTG-atG~iG~~l~~~L~~~-------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 73 (342)
T 1y1p_A 10 EGSLVLVTG-ANGFVASHVVEQLLEH-------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK 73 (342)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHC-------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC
Confidence 467888555 5688888998887652 24799999998877666554433222456665 566654
No 461
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=42.23 E-value=1.4e+02 Score=30.16 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=42.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEe-CCHHHHHHHHHHHH-HcCCCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND-LDVQRCNLLIHQTK-RMCTANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnD-id~~R~~~L~~n~k-Rlg~~ni~vt~~Da~~f 149 (731)
+.+||=.+ |.|+....++..|... ...|++++ .+..++..+...+. ..+ .++.+...|....
T Consensus 9 ~k~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 9 VPVALVTG-AAKRLGRSIAEGLHAE-------GYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNV 72 (291)
T ss_dssp CCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSS
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCeEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCc
Confidence 45666444 5577788888887652 34799999 99988887777665 444 3566667776653
No 462
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=42.17 E-value=79 Score=33.76 Aligned_cols=95 Identities=18% Similarity=-0.010 Sum_probs=61.6
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCccc
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRA 154 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvA-nDid~~R~~~L~~n~kRlg~~n--i~vt~~Da~~fp~~~~ 154 (731)
++.+||.+..+=|..|+.++.. + ++. .| |.-....+.+|+.+++.+. +.+...-.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~------------~-~~~~~d-s~~~~~~~~~n~~~~~~~~~~~~~~~~~~-------- 95 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH------------K-PYSIGD-SYISELATRENLRLNGIDESSVKFLDSTA-------- 95 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG------------C-CEEEES-CHHHHHHHHHHHHHTTCCGGGSEEEETTS--------
T ss_pred CCCCEEEECCCCCHHHHhhccC------------C-ceEEEh-HHHHHHHHHHHHHHcCCCccceEeccccc--------
Confidence 4567999999999988877531 1 223 35 5556678889999988753 33322100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYS 234 (731)
.....||.|++-.|- .+..+ ...|.+.+..|++|++|+..
T Consensus 96 -----------------~~~~~~~~v~~~lpk----------------------~~~~l-~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 96 -----------------DYPQQPGVVLIKVPK----------------------TLALL-EQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp -----------------CCCSSCSEEEEECCS----------------------CHHHH-HHHHHHHHTTCCTTSEEEEE
T ss_pred -----------------ccccCCCEEEEEcCC----------------------CHHHH-HHHHHHHHhhCCCCCEEEEE
Confidence 112579999987661 12222 44677888899999998643
No 463
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=42.11 E-value=82 Score=31.56 Aligned_cols=62 Identities=2% Similarity=-0.036 Sum_probs=42.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...+......++.+...|..+
T Consensus 26 ~k~vlITG-asggiG~~la~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~ 87 (302)
T 1w6u_A 26 GKVAFITG-GGTGLGKGMTTLLSSL-------GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD 87 (302)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC
Confidence 56676555 5577788888887653 34799999999888777666654312356677777654
No 464
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=41.75 E-value=69 Score=32.04 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=42.0
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-------------CHHHHHHHHHHHHHcCCCceEEEec
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-------------DVQRCNLLIHQTKRMCTANLIVTNH 144 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-------------d~~R~~~L~~n~kRlg~~ni~vt~~ 144 (731)
.|.+||=.+| .|+...+++..|... ...|+++|. +..++..+.+.+...+. ++.+...
T Consensus 14 ~gk~~lVTGa-s~gIG~a~a~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (280)
T 3pgx_A 14 QGRVAFITGA-ARGQGRSHAVRLAAE-------GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVL 84 (280)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEEC
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEc
Confidence 3566775555 466778888877652 357899987 67888877777665553 4566666
Q ss_pred cccc
Q 004775 145 EAQH 148 (731)
Q Consensus 145 Da~~ 148 (731)
|..+
T Consensus 85 Dv~~ 88 (280)
T 3pgx_A 85 DVRD 88 (280)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6654
No 465
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=41.70 E-value=1.3e+02 Score=29.17 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.++.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...+. .++.+...|...
T Consensus 12 ~~~k~vlVTG-as~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~ 71 (249)
T 3f9i_A 12 LTGKTSLITG-ASSGIGSAIARLLHKL-------GSKVIISGSNEEKLKSLGNALK----DNYTIEVCNLAN 71 (249)
T ss_dssp CTTCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHC----SSEEEEECCTTS
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCC
Confidence 3566777555 5567788888877652 3579999999988877655442 345666666544
No 466
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=41.53 E-value=97 Score=30.82 Aligned_cols=61 Identities=5% Similarity=0.094 Sum_probs=41.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT-KRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~-kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+ ...+. .+.+...|...
T Consensus 21 ~k~~lVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~ 82 (267)
T 1vl8_A 21 GRVALVTG-GSRGLGFGIAQGLAEA-------GCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSN 82 (267)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 55666555 5677788888887652 347999999998887776665 33443 45556666554
No 467
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=41.51 E-value=73 Score=31.99 Aligned_cols=61 Identities=3% Similarity=-0.014 Sum_probs=42.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+| .|+...+++..|... ...|++++.+..++..+...++..+. .+.+...|..+
T Consensus 24 ~k~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 84 (279)
T 3sju_A 24 PQTAFVTGV-SSGIGLAVARTLAAR-------GIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTS 84 (279)
T ss_dssp -CEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTC
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCC
Confidence 556776565 566778888877652 35799999999998888877765543 46666677655
No 468
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=40.98 E-value=50 Score=35.49 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=33.2
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHH
Q 004775 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (731)
Q Consensus 175 ~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~ 253 (731)
..||.||+-.| + .. .+. +-...|.+++..|++||.|+..- +|...+..+++.
T Consensus 100 ~~~d~v~~~~P---------------k---~k--~~~-~~~~~l~~~~~~l~~g~~i~~~g------~~~~g~~~~~~~ 151 (381)
T 3dmg_A 100 GAYDLVVLALP---------------A---GR--GTA-YVQASLVAAARALRMGGRLYLAG------DKNKGFERYFKE 151 (381)
T ss_dssp TCEEEEEEECC---------------G---GG--CHH-HHHHHHHHHHHHEEEEEEEEEEE------EGGGTHHHHHHH
T ss_pred CCCCEEEEECC---------------c---ch--hHH-HHHHHHHHHHHhCCCCCEEEEEE------ccHHHHHHHHHH
Confidence 67999999777 1 00 111 22346778889999999987552 444456666653
No 469
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=40.81 E-value=88 Score=31.28 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=40.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC----------------HHHHHHHHHHHHHcCCCceEEE
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD----------------VQRCNLLIHQTKRMCTANLIVT 142 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid----------------~~R~~~L~~n~kRlg~~ni~vt 142 (731)
|.+||=-+| .|+...+++..|... ...|+++|.+ ..++..+...++..+ ..+.+.
T Consensus 11 ~k~~lVTGa-s~gIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (286)
T 3uve_A 11 GKVAFVTGA-ARGQGRSHAVRLAQE-------GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTA 81 (286)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEE
Confidence 556665555 466778888877653 3578999887 677776666665444 356666
Q ss_pred eccccc
Q 004775 143 NHEAQH 148 (731)
Q Consensus 143 ~~Da~~ 148 (731)
..|..+
T Consensus 82 ~~Dv~~ 87 (286)
T 3uve_A 82 EVDVRD 87 (286)
T ss_dssp ECCTTC
T ss_pred EcCCCC
Confidence 777665
No 470
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=40.72 E-value=65 Score=32.24 Aligned_cols=134 Identities=10% Similarity=0.072 Sum_probs=71.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+| .|+....++..|... ...|+.+ ..+..+...+...+...+. .+.+...|..+...+.-
T Consensus 27 ~k~~lVTGa-s~GIG~aia~~la~~-------G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~--- 94 (267)
T 3u5t_A 27 NKVAIVTGA-SRGIGAAIAARLASD-------GFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRR--- 94 (267)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHH-------TCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHH---
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHH---
Confidence 556665555 566677777776542 2356555 5677777777777766653 45666667655321110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEeC
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYSTC 236 (731)
............|.++..+--...+.+.. .++.|.+ .-..++. -...+++.++..++.+|+||+.+.
T Consensus 95 --------~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~---~~~vN~~-g~~~~~~~~~~~~~~~g~iv~isS 162 (267)
T 3u5t_A 95 --------LFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDR---VIAVNLK-GTFNTLREAAQRLRVGGRIINMST 162 (267)
T ss_dssp --------HHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHH---HHHHHHH-HHHHHHHHHHHHEEEEEEEEEECC
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHH---HHHHHHH-HHHHHHHHHHHHHhhCCeEEEEeC
Confidence 00000111246898888654333333222 2233332 1111121 224567778888888899998743
No 471
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=40.41 E-value=93 Score=31.49 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=72.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
|..+|=-+|+ ++....++..|... ...|+.+|.+..+++.+...+...+. ++.....|..+...+.
T Consensus 9 gKvalVTGas-~GIG~aia~~la~~-------Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~----- 74 (255)
T 4g81_D 9 GKTALVTGSA-RGLGFAYAEGLAAA-------GARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIE----- 74 (255)
T ss_dssp TCEEEETTCS-SHHHHHHHHHHHHT-------TCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHH-----
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHH-----
Confidence 6666655555 55677788777653 45899999999999988888877764 4555566655421110
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhc---cCCCEEEEE
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLL---KVGGRIVYS 234 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL---KpGG~LVYS 234 (731)
.............|.++..+--...+.+.. .++.|.+ .-..++.. -..+.+.++..+ +.||+||..
T Consensus 75 ------~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~---~~~vNl~g-~~~~~~~~~p~m~~~~~~G~IVni 144 (255)
T 4g81_D 75 ------AAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQK---VIDTNLTS-AFLVSRSAAKRMIARNSGGKIINI 144 (255)
T ss_dssp ------HHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHH-HHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ------HHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHH---HHHHHhHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 000011123457898887663333332221 2334443 11122222 123455556555 256888865
No 472
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=40.35 E-value=2.3e+02 Score=28.54 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=43.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHF 149 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg-~~ni~vt~~Da~~f 149 (731)
|.+||=.+| .|+....++..|.... ...-.|+..+.+..++..+...+.... ...+.+...|..+.
T Consensus 33 ~k~~lVTGa-s~GIG~aia~~l~~~G----~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~ 99 (287)
T 3rku_A 33 KKTVLITGA-SAGIGKATALEYLEAS----NGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQA 99 (287)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCG
T ss_pred CCEEEEecC-CChHHHHHHHHHHHcC----CCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCH
Confidence 567776665 4666777777664310 001189999999999988888776542 34567777777653
No 473
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=40.19 E-value=1.3e+02 Score=30.11 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=68.6
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHH-HHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ-RCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~-R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|.+||=.+ |.|+...+++..|... ...|++++.+.. ....+...+...+. ++.+...|......+.-
T Consensus 29 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~--- 96 (283)
T 1g0o_A 29 GKVALVTG-AGRGIGREMAMELGRR-------GCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVR--- 96 (283)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHH---
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHH---
Confidence 55666544 5677888888888753 347888888764 35555555555543 45556666554211100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
...........+|.|+..+--...+.+. ..++.|... ...++ .-...+++.++..++.+|+||+.+
T Consensus 97 --------~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 97 --------MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRV---FTINT-RGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp --------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred --------HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHH---HHHhh-HHHHHHHHHHHHHHhcCCeEEEEe
Confidence 0000001124689888755332222221 122333221 11111 122445667777777789998864
No 474
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=40.17 E-value=95 Score=30.74 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=41.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|+.. +.+..++..+...++..+. ++.+...|..+
T Consensus 4 ~k~vlVTG-as~gIG~aia~~l~~~-------G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 65 (258)
T 3oid_A 4 NKCALVTG-SSRGVGKAAAIRLAEN-------GYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQ 65 (258)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTC
T ss_pred CCEEEEec-CCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 45566444 5577788888887652 2356665 8898888888877765553 46666777655
No 475
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.06 E-value=1e+02 Score=27.54 Aligned_cols=53 Identities=15% Similarity=0.003 Sum_probs=36.4
Q ss_pred CEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
.+|+=++ -|.....+++.|... .-.|+++|.++.+++.+.. .| +.+..+|+..
T Consensus 8 ~~viIiG--~G~~G~~la~~L~~~-------g~~v~vid~~~~~~~~~~~----~g---~~~i~gd~~~ 60 (140)
T 3fwz_A 8 NHALLVG--YGRVGSLLGEKLLAS-------DIPLVVIETSRTRVDELRE----RG---VRAVLGNAAN 60 (140)
T ss_dssp SCEEEEC--CSHHHHHHHHHHHHT-------TCCEEEEESCHHHHHHHHH----TT---CEEEESCTTS
T ss_pred CCEEEEC--cCHHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHH----cC---CCEEECCCCC
Confidence 4555444 477778888888752 3479999999999887653 33 4556677654
No 476
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=40.04 E-value=35 Score=34.06 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=67.4
Q ss_pred CCEEEeecc-CcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHH-HHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004775 79 DHFVLDMCA-APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (731)
Q Consensus 79 g~~VLDmCA-APGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R-~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~ 156 (731)
+.+||=.+| |.|+....++..|... ...|++++.+..+ +..+.+ .++ .++.+...|..+...+.-
T Consensus 7 ~k~vlVTGa~~s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~Dv~~~~~v~~-- 73 (269)
T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQ-------GAQLVLTGFDRLRLIQRITD---RLP-AKAPLLELDVQNEEHLAS-- 73 (269)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHT-------TCEEEEEECSCHHHHHHHHT---TSS-SCCCEEECCTTCHHHHHH--
T ss_pred CCEEEEECCCCCCchHHHHHHHHHHC-------CCEEEEEecChHHHHHHHHH---hcC-CCceEEEccCCCHHHHHH--
Confidence 567887787 4888888888888753 3578899988765 233322 233 234455556544211100
Q ss_pred CCCCCCccccccccccccc---cccEEEecCCCCC-----CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004775 157 NFSSASDKGIESESNMGQL---LFDRVLCDVPCSG-----DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (731)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~---~FDrIL~D~PCSG-----dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (731)
.......... .+|.++..+--.. .+.+. ..++.|.+ ....++ .-...+++.++..++.
T Consensus 74 ---------~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~---~~~~N~-~g~~~l~~~~~~~~~~ 140 (269)
T 2h7i_A 74 ---------LAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSK---GIHISA-YSYASMAKALLPIMNP 140 (269)
T ss_dssp ---------HHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHH---HHHHHT-HHHHHHHHHHGGGEEE
T ss_pred ---------HHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHH---HHHHhh-HHHHHHHHHHHHhhcc
Confidence 0000001112 6898887553221 11111 12222322 111111 1224567778888888
Q ss_pred CCEEEEEe
Q 004775 228 GGRIVYST 235 (731)
Q Consensus 228 GG~LVYST 235 (731)
+|+||+.+
T Consensus 141 ~g~iv~is 148 (269)
T 2h7i_A 141 GGSIVGMD 148 (269)
T ss_dssp EEEEEEEE
T ss_pred CCeEEEEc
Confidence 89998764
No 477
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=39.73 E-value=1.1e+02 Score=30.50 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=43.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+ |.|+....++..|... ...|+.+|.+..++..+...++..+. ++.+...|..+
T Consensus 26 gk~~lVTG-as~gIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 86 (271)
T 4ibo_A 26 GRTALVTG-SSRGLGRAMAEGLAVA-------GARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTS 86 (271)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 55666555 5677788888877652 35899999999999888888776653 45666666554
No 478
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=39.63 E-value=1.3e+02 Score=30.07 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=43.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl----g~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+... ...++.+...|..+
T Consensus 18 ~k~vlVTG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T 1yxm_A 18 GQVAIVTG-GATGIGKAIVKELLEL-------GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN 83 (303)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC
Confidence 56777555 4677888888887652 347999999998888777776552 12356677777654
No 479
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=39.51 E-value=1.1e+02 Score=29.85 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=41.5
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++. +..++..+...++..+ .++.+...|..+
T Consensus 7 ~k~vlITG-asggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 68 (261)
T 1gee_A 7 GKVVVITG-SSTGLGKSMAIRFATE-------KAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTV 68 (261)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTS
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 55666444 5677788888877652 347899998 8888777777666544 345666667654
No 480
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=38.90 E-value=1.4e+02 Score=30.11 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=42.1
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+....++..|... ...|++++.+..++..+...++..+. .+.+...|..+
T Consensus 34 ~k~vlVTG-as~gIG~aia~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 94 (291)
T 3cxt_A 34 GKIALVTG-ASYGIGFAIASAYAKA-------GATIVFNDINQELVDRGMAAYKAAGI-NAHGYVCDVTD 94 (291)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEecCCC
Confidence 55666555 4577788888877652 34799999999888877776665543 45556666554
No 481
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=38.40 E-value=46 Score=35.60 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004775 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (731)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~ 129 (731)
+|.+|+=+++ |.-...+++.+... ...|++.|.++.|++.+..
T Consensus 167 ~g~~V~ViG~--G~iG~~~a~~a~~~-------Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 167 EPADVVVIGA--GTAGYNAARIANGM-------GATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHH
Confidence 5789999988 55656666666542 2389999999999876643
No 482
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=38.37 E-value=66 Score=31.87 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=70.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAn-Did~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
|.+||=.+| .|+...+++..|... ...|+.. +.+..+...+...++..+. ++.+...|..+...+.-
T Consensus 8 ~k~vlVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~--- 75 (259)
T 3edm_A 8 NRTIVVAGA-GRDIGRACAIRFAQE-------GANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEA--- 75 (259)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHH---
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH---
Confidence 556665554 566777888877652 2356666 7788887777777665553 45666667654221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCC-CCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEe
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCS-GDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCS-GdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVYST 235 (731)
............|.++..+--. ..+.+. ..++.|.+- ...++ .-...+++.++..++.+|+||+.+
T Consensus 76 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~---~~vN~-~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 76 --------AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQV---LDVNL-TSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp --------HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHH---HHHHT-HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --------HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHH---HHHHH-HHHHHHHHHHHHHHhcCCEEEEEc
Confidence 0000011124688888755211 112221 123333321 11111 123456777888888789998864
No 483
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=38.33 E-value=1.5e+02 Score=29.82 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|..+|=-+|+. |.-..+|..+... ...|+.+|.+..+++.+...++..|. ++.....|..+
T Consensus 7 gKvalVTGas~-GIG~aiA~~la~~-------Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~ 67 (254)
T 4fn4_A 7 NKVVIVTGAGS-GIGRAIAKKFALN-------DSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSK 67 (254)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTS
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHc-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 66666666555 4567777777652 46899999999999999998887774 45666777665
No 484
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=38.29 E-value=1.6e+02 Score=28.86 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=41.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+...+. ++.+...|..+
T Consensus 7 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (262)
T 1zem_A 7 GKVCLVTG-AGGNIGLATALRLAEE-------GTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTS 67 (262)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 55666444 5677788888887652 34799999999888877766654442 45666666654
No 485
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=37.96 E-value=90 Score=30.71 Aligned_cols=59 Identities=7% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~-~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++.+.+..+...+...+ +. .++.+...|..+
T Consensus 16 ~k~vlITG-asggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~ 75 (278)
T 2bgk_A 16 DKVAIITG-GAGGIGETTAKLFVRY-------GAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTK 75 (278)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---CCTTTEEEEECCTTC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEcCChhHHHHHHHHh---CCCCceEEEECCCCC
Confidence 56777555 5678888888887652 347899999988766554433 22 256677777654
No 486
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=37.69 E-value=2e+02 Score=27.53 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=39.6
Q ss_pred EEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvA-nDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+|| +.-|.|+...+++..|... ...|++ .+.+..+...+...++..+. ++.+...|..+
T Consensus 3 ~vl-VTGasggiG~~la~~l~~~-------G~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 62 (244)
T 1edo_A 3 VVV-VTGASRGIGKAIALSLGKA-------GCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSK 62 (244)
T ss_dssp EEE-ETTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTS
T ss_pred EEE-EeCCCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEeCCCCC
Confidence 455 4556788888888888652 246777 47888888777776665543 45666666654
No 487
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=37.63 E-value=1.2e+02 Score=30.51 Aligned_cols=130 Identities=8% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~~ 158 (731)
+.+||=-+| .|+...+++..|... ...|+..|.+..++..+... ++ ..+.+...|..+...+.-
T Consensus 27 ~k~vlVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dv~d~~~v~~---- 90 (277)
T 4dqx_A 27 QRVCIVTGG-GSGIGRATAELFAKN-------GAYVVVADVNEDAAVRVANE---IG-SKAFGVRVDVSSAKDAES---- 90 (277)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHH---HC-TTEEEEECCTTCHHHHHH----
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH---hC-CceEEEEecCCCHHHHHH----
Confidence 556665554 567778888877652 35899999998887766554 33 245566666654221100
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccC--CCEEEEEe
Q 004775 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV--GGRIVYST 235 (731)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp--GG~LVYST 235 (731)
...........+|.++..+--...+.+.. .++.|.+- ...++. -...+++.++..++. +|+||+.+
T Consensus 91 -------~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~---~~vN~~-g~~~~~~~~~~~~~~~~~g~iv~is 159 (277)
T 4dqx_A 91 -------MVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRI---MSVNVK-GIFLCSKYVIPVMRRNGGGSIINTT 159 (277)
T ss_dssp -------HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHH---HHHHTH-HHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred -------HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHH---HHHhhH-HHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 00000111246899988654333332222 22333321 111111 123455566666543 57888764
No 488
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=37.42 E-value=1.7e+02 Score=28.65 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=41.3
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRl-g~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+... + .++.+...|..+
T Consensus 7 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~ 68 (263)
T 3ai3_A 7 GKVAVITG-SSSGIGLAIAEGFAKE-------GAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVAT 68 (263)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTS
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 55666544 5577788888887652 347999999998887776666543 4 346666666654
No 489
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=37.35 E-value=1.8e+02 Score=28.41 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=39.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=.+ |.|+...+++..|... ...|+.+|.+..++..+...+ + ..+.+...|..+
T Consensus 8 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~ 65 (259)
T 4e6p_A 8 GKSALITG-SARGIGRAFAEAYVRE-------GATVAIADIDIERARQAAAEI---G-PAAYAVQMDVTR 65 (259)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCC
Confidence 56677555 5577788888877653 347999999998877665543 3 345666666654
No 490
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=37.09 E-value=7.1 Score=52.21 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCCEEEeeccCcchHHHHHHHHhhcCCCCCCCC--CeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004775 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALP--NGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (731)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p--~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~ 154 (731)
.|..+||.++||.|+.|..+++.+.. .+ ....+..|++......++++++.+....-..-..+.+.|..
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~------~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~--- 1309 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNT------QPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSL--- 1309 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTT------SSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC------
T ss_pred CCCceEEEECCCccHHHHHHHHhhcc------cCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCC---
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004775 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (731)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG~LVY 233 (731)
..||.|++ .+.......-...|.+..++|||||+|+.
T Consensus 1310 --------------------~~ydlvia----------------------~~vl~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A 1310 --------------------GKADLLVC----------------------NCALATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp ----------------------CCEEEE----------------------ECC--------------------CCEEEE
T ss_pred --------------------CceeEEEE----------------------cccccccccHHHHHHHHHHhcCCCcEEEE
No 491
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=36.61 E-value=20 Score=38.48 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCCCEEEEEeCCCCCcCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCc-----ccceeccCCcccc
Q 004775 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGL-----RKWKVRDKGIWLA 289 (731)
Q Consensus 215 ~~IL~rAl~lLKpGG~LVYSTCSl~p~ENEaVV~~~L~~~~g~~elvd~s~~lP~l~~~~Gl-----~~W~v~~~~~~~~ 289 (731)
.+.|..|..+|+|||+|+.- |++..|+- +|..+++...... .+...+|.. ..+. ..|+...+ ..+
T Consensus 254 ~~~L~~a~~~L~~gGRl~VI--SFHSLEDR-iVK~~f~~~~~~~---~~p~~~p~~--~~~~~~~~~~~~~~i~k--i~p 323 (347)
T 3tka_A 254 EQALKSSLNVLAPGGRLSII--SFHSLEDR-IVKRFMRENSRGP---QVPAGLPMT--EEQLKKLGGRQLRALGK--LMP 323 (347)
T ss_dssp HHHHHHHHHHEEEEEEEEEE--ESSHHHHH-HHHHHHHHTTCC------------------------CCEEEEEE--ECC
T ss_pred HHHHHHHHHHhCCCCEEEEE--ecCchhHH-HHHHHHHHhccCC---CCCccCCcc--ccccccccCcceeeecC--cCc
Confidence 45788999999999999875 77777875 5577777643221 122233321 1111 24666554 567
Q ss_pred chhhhhhhhcc
Q 004775 290 SHKHVRKFRRI 300 (731)
Q Consensus 290 ~~~~~~~~~~~ 300 (731)
+-+|+..+-|.
T Consensus 324 s~~Ei~~NpRs 334 (347)
T 3tka_A 324 GEEEVAENPRA 334 (347)
T ss_dssp CHHHHHHCGGG
T ss_pred CHHHHHhCccc
Confidence 77887766553
No 492
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=36.45 E-value=88 Score=30.27 Aligned_cols=61 Identities=7% Similarity=-0.027 Sum_probs=41.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC-HHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD-VQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid-~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||= .-|.|+...+++..|... ...|++++.+ ..++..+...++..+ .++.+...|..+
T Consensus 7 ~k~vlV-TGasggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 68 (258)
T 3afn_B 7 GKRVLI-TGSSQGIGLATARLFARA-------GAKVGLHGRKAPANIDETIASMRADG-GDAAFFAADLAT 68 (258)
T ss_dssp TCEEEE-TTCSSHHHHHHHHHHHHT-------TCEEEEEESSCCTTHHHHHHHHHHTT-CEEEEEECCTTS
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHC-------CCEEEEECCCchhhHHHHHHHHHhcC-CceEEEECCCCC
Confidence 566774 445688888888888752 3478999998 777777666665544 356666777655
No 493
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=36.45 E-value=1.9e+02 Score=29.62 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEeccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHEA 146 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid------------~~R~~~L~~n~kRlg~~ni~vt~~Da 146 (731)
|.+||=.+ |.|+....++..|... ...|+++|.+ ..++..+...+...+. .+.+...|.
T Consensus 46 gk~~lVTG-as~GIG~aia~~la~~-------G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv 116 (317)
T 3oec_A 46 GKVAFITG-AARGQGRTHAVRLAQD-------GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADV 116 (317)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCT
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCC
Confidence 55666555 4567778888877652 3578888876 6777766666665553 466667776
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004775 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (731)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (731)
.+...+.- ...........+|.++..+--+..+.+.. .++.|.+- ...++.. ...+++.++..+
T Consensus 117 ~d~~~v~~-----------~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~---~~vN~~g-~~~l~~~~~~~m 181 (317)
T 3oec_A 117 RDLASLQA-----------VVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI---LQTNLIG-AWHACRAVLPSM 181 (317)
T ss_dssp TCHHHHHH-----------HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHH---HHHHTHH-HHHHHHHHHHHH
T ss_pred CCHHHHHH-----------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH---HHHhhHH-HHHHHHHHHHHH
Confidence 55321110 00000112247899988664443333221 23333321 1111111 123445555544
Q ss_pred ---cCCCEEEEE
Q 004775 226 ---KVGGRIVYS 234 (731)
Q Consensus 226 ---KpGG~LVYS 234 (731)
+.+|+||+.
T Consensus 182 ~~~~~~g~Iv~i 193 (317)
T 3oec_A 182 IERGQGGSVIFV 193 (317)
T ss_dssp HHTCSCEEEEEE
T ss_pred HHcCCCCEEEEE
Confidence 236888875
No 494
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=36.31 E-value=2e+02 Score=28.54 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=40.9
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-------------CHHHHHHHHHHHHHcCCCceEEEecc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-------------DVQRCNLLIHQTKRMCTANLIVTNHE 145 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-------------d~~R~~~L~~n~kRlg~~ni~vt~~D 145 (731)
|.+||=.+| .|+...+++..|... ...|+++|. +..++..+.+.+...+. .+.+...|
T Consensus 11 ~k~~lVTGa-s~GIG~a~a~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 81 (277)
T 3tsc_A 11 GRVAFITGA-ARGQGRAHAVRMAAE-------GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVD 81 (277)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred CCEEEEECC-ccHHHHHHHHHHHHc-------CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECC
Confidence 556665555 566677788777652 358899988 67777777766665543 46666677
Q ss_pred ccc
Q 004775 146 AQH 148 (731)
Q Consensus 146 a~~ 148 (731)
..+
T Consensus 82 ~~~ 84 (277)
T 3tsc_A 82 TRD 84 (277)
T ss_dssp TTC
T ss_pred CCC
Confidence 665
No 495
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=36.29 E-value=2e+02 Score=28.56 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=70.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDi-d~~R~~~L~~n~kRlg~~ni~vt~~Da~~fp~~~~~~~ 157 (731)
+.+||=.+ |.|+...+++..|... ...|+.++. +..+...+...++..+. .+.+...|..+...+.-
T Consensus 28 ~k~vlVTG-as~gIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~--- 95 (269)
T 4dmm_A 28 DRIALVTG-ASRGIGRAIALELAAA-------GAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEA--- 95 (269)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHH---
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHH---
Confidence 55666555 4567788888877652 347778787 77888888777776654 45666677655322110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhc--cCCCEEEEE
Q 004775 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLL--KVGGRIVYS 234 (731)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrIL~D~PCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL--KpGG~LVYS 234 (731)
............|.++..+--+..+.+.. .++.|.+--. .++. -...+++.++..+ +.+|+||+.
T Consensus 96 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~---vN~~-g~~~l~~~~~~~~~~~~~g~iv~i 163 (269)
T 4dmm_A 96 --------LFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLD---LNLG-GVFLCSRAAAKIMLKQRSGRIINI 163 (269)
T ss_dssp --------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH---HHTH-HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH---HHhH-HHHHHHHHHHHHHHHcCCcEEEEE
Confidence 00001112246899988664444333222 2333432111 1111 1223444455444 346888876
Q ss_pred e
Q 004775 235 T 235 (731)
Q Consensus 235 T 235 (731)
+
T Consensus 164 s 164 (269)
T 4dmm_A 164 A 164 (269)
T ss_dssp C
T ss_pred C
Confidence 3
No 496
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=36.22 E-value=1.3e+02 Score=28.72 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=37.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|.|+...+++..|... .-.|++++.+..++..+... ++ ++.+...|..+
T Consensus 5 ~k~vl-VtGasggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~D~~~ 61 (234)
T 2ehd_A 5 KGAVL-ITGASRGIGEATARLLHAK-------GYRVGLMARDEKRLQALAAE---LE--GALPLPGDVRE 61 (234)
T ss_dssp CCEEE-ESSTTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHH---ST--TCEEEECCTTC
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHH---hh--hceEEEecCCC
Confidence 34566 4556688888888888652 34799999998877655443 22 45566666554
No 497
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=36.12 E-value=1.5e+02 Score=29.73 Aligned_cols=58 Identities=3% Similarity=-0.033 Sum_probs=39.2
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+|| +.-|.|+....++..|... ...|+++|.+..++..+...+ + .++.+...|..+
T Consensus 28 ~k~~l-VTGas~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d 85 (272)
T 4dyv_A 28 KKIAI-VTGAGSGVGRAVAVALAGA-------GYGVALAGRRLDALQETAAEI---G-DDALCVPTDVTD 85 (272)
T ss_dssp CCEEE-ETTTTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---T-SCCEEEECCTTS
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHh---C-CCeEEEEecCCC
Confidence 45555 4555677788888877652 357999999998877666544 3 345666666654
No 498
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=36.03 E-value=2.1e+02 Score=27.97 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||=. -|.|+...+++..|... ...|++++.+..++..+...+...+. .+.+...|..+
T Consensus 14 ~k~vlVT-Gas~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 74 (260)
T 2zat_A 14 NKVALVT-ASTDGIGLAIARRLAQD-------GAHVVVSSRKQENVDRTVATLQGEGL-SVTGTVCHVGK 74 (260)
T ss_dssp TCEEEES-SCSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 5566644 45677788888887652 34899999999888777766665543 45555666544
No 499
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=35.61 E-value=2e+02 Score=28.58 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=42.8
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
+.+||= .-|.|+....++..|... ...|++++.+..++..+...++..+. .+.+...|..+
T Consensus 28 ~k~~lV-TGas~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d 88 (270)
T 3ftp_A 28 KQVAIV-TGASRGIGRAIALELARR-------GAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVND 88 (270)
T ss_dssp TCEEEE-TTCSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTC
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCC
Confidence 556664 445677788888877652 35899999999999888888877654 34455566554
No 500
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=35.38 E-value=1.2e+02 Score=30.41 Aligned_cols=58 Identities=7% Similarity=0.067 Sum_probs=38.7
Q ss_pred CCEEEeeccCcchHHHHHHHHhhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004775 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (731)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~l~~~~~~~~~p~G~VvAnDid~~R~~~L~~n~kRlg~~ni~vt~~Da~~ 148 (731)
|.+||=.+ |.|+...+++..|... ...|+.+|.+..++..+...+ + ..+.+...|..+
T Consensus 29 gk~vlVTG-as~gIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d 86 (277)
T 3gvc_A 29 GKVAIVTG-AGAGIGLAVARRLADE-------GCHVLCADIDGDAADAAATKI---G-CGAAACRVDVSD 86 (277)
T ss_dssp TCEEEETT-TTSTHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHH---C-SSCEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHc---C-CcceEEEecCCC
Confidence 55666555 4566777888877652 358999999998887766544 3 345566666654
Done!