RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004775
(731 letters)
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 196 bits (501), Expect = 1e-56
Identities = 80/229 (34%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM 113
E G I Q+ S +P L LD +P VLD+CAAPG KT L E++ N GA+
Sbjct: 132 EFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELME---NEGAI---- 184
Query: 114 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173
V+A D+ +R L KR+ N+IV N +A+ + E
Sbjct: 185 VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA------------ELLPGGEK--- 229
Query: 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233
FDR+L D PCSG G +R+ PD+ + L LQ +I + LLK GG +VY
Sbjct: 230 ---FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVY 286
Query: 234 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVR 282
STCS+ P ENE VV L + EL V L G K R
Sbjct: 287 STCSLTPEENEEVVERFLERHPD-FELEPVRLPWGPLFEGLGSELGKTR 334
Score = 41.6 bits (98), Expect = 0.001
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 329 VNSDEGLQQVEDVLTSADDLEEEVSDLP-----------LERCMRLVPHDQNSGAFFIAV 377
+ +E + VE L D E E LP L + RL PH + FFIA
Sbjct: 291 LTPEENEEVVERFLERHPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGTDGFFIAK 350
Query: 378 LQKVS 382
L+K
Sbjct: 351 LRKKR 355
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 148 bits (375), Expect = 3e-40
Identities = 75/215 (34%), Positives = 100/215 (46%), Gaps = 29/215 (13%)
Query: 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM 113
E G QEA SM+PP+ L+ + D VLDM AAPG KT Q+ +++ N G
Sbjct: 47 EYLFGYYYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMK---NKGC----- 98
Query: 114 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173
++AN++ R LI RM N IV N + + F
Sbjct: 99 IVANEISKSRTKALISNINRMGVLNTIVINADGRKFGAYL-------------------- 138
Query: 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233
L FD +L D PCSG+G +RK P R W+ LQ ++ I LK GG +VY
Sbjct: 139 -LKFDAILLDAPCSGEGVIRKDPSRKRNWSEEDIKYCSLLQKELIDAAIDALKPGGVLVY 197
Query: 234 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268
STCS+ ENE V+ ILRK VE + +E
Sbjct: 198 STCSLEVEENEEVIDYILRKRPDVVEEIIKGDEFF 232
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 138 bits (349), Expect = 6e-35
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 45/252 (17%)
Query: 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117
G IT Q+ SM+ LD + VLD CAAPG KT + E++ G V+A
Sbjct: 230 GLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLK--------NTGKVVAL 281
Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
D+ + L+ KR L +TN E + + ++ F E F
Sbjct: 282 DIHEHKLKLIEENAKR-----LGLTNIETKALDARKVHEKF-------AEK--------F 321
Query: 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLG--NGLHSLQVQIAMRGISLLKVGGRIVYST 235
D++L D PCSG G +R+ PDI K+N L +Q++I LK GG +VYST
Sbjct: 322 DKILVDAPCSGLGVIRRKPDI--KYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379
Query: 236 CSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH-- 293
C++ ENE V+ L + ELV + +E +P ++V+D + + + +
Sbjct: 380 CTIEKEENEEVIEAFLEE-HPEFELVPLQHE------KPDELVYEVKDGYLQILPNDYGT 432
Query: 294 ----VRKFRRIG 301
+ K R+ G
Sbjct: 433 DGFFIAKLRKKG 444
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 124 bits (314), Expect = 9e-32
Identities = 78/230 (33%), Positives = 106/230 (46%), Gaps = 33/230 (14%)
Query: 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVI 115
E G +T Q+A S + + L+ Q D F+LDMCAAPG KT + E+ G V+
Sbjct: 62 ENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAEL--------MKNEGTVV 113
Query: 116 ANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175
A D + QR + +R+ N+IV +A+ K + E
Sbjct: 114 AVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQ------------IDQKLLGGE------ 155
Query: 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235
FDR+L D PCSG G +R+ PDI L LQ ++ L+K GG +VYST
Sbjct: 156 -FDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYST 214
Query: 236 CSMNPVENEAVVAEILRKCEGSVELVDV--SNEVPQLIHR---PGLRKWK 280
CS+ P ENEAV+ L+K VELV S L R GL+
Sbjct: 215 CSVLPEENEAVIKYFLQKRP-DVELVPTGLSEGKIALAKRIVKGGLQSLP 263
Score = 64.7 bits (158), Expect = 2e-11
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 180 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239
+L CS GTLRK ++W++ L +Q++ R L G + YS S+
Sbjct: 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHAL-PVGDLPYSIGSLP 59
Query: 240 PVENEAVVAEILRK 253
P EN AV +
Sbjct: 60 PFENGAVTVQDASS 73
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 108 bits (271), Expect = 8e-25
Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 40/192 (20%)
Query: 63 QEAVSMVPP--LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPN--GMVIAND 118
QEA SM+P LF D VLDM AAPGSKT Q+ AL N G ++AN+
Sbjct: 96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQI----------AALMNNQGAIVANE 145
Query: 119 LDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL-- 176
R +L R +N+ +T+ + + F G L
Sbjct: 146 YSASRVKVLHANISRCGVSNVALTHFDGRVF-----------------------GAALPE 182
Query: 177 -FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235
FD +L D PCSG+GT+RK PD + W+ + + Q ++ LK GG +VYST
Sbjct: 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242
Query: 236 CSMNPVENEAVV 247
C++N EN+AV
Sbjct: 243 CTLNREENQAVC 254
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
RsmB. This protein is also known as sun protein. The
reading frame was originally interpreted as two reading
frames, fmu and fmv. The recombinant protein from E.
coli was shown to methylate only C967 of small subunit
(16S) ribosomal RNA and to produce only m5C at that
position. The seed alignment is built from bacterial
sequences only. Eukaryotic homologs include Nop2, a
protein required for processing pre-rRNA, that is likely
also a rRNA methyltransferase, although the fine
specificity may differ. Cutoff scores are set to avoid
treating archaeal and eukaroytic homologs automatically
as functionally equivalent, although they may have very
similar roles [Protein synthesis, tRNA and rRNA base
modification].
Length = 426
Score = 102 bits (255), Expect = 4e-23
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117
G +T Q+A + +L Q + +LD CAAPG KT +LE+ P V+A
Sbjct: 218 GWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILEL---------APQAQVVAL 268
Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
D+ R + KR+ T P + E+E F
Sbjct: 269 DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP------------SQWAENE------QF 310
Query: 178 DRVLCDVPCSGDGTLRKAPDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236
DR+L D PCS G +R+ PDI W + + L LQ +I LLK GG +VY+TC
Sbjct: 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAE-LAELQSEILDAIWPLLKTGGTLVYATC 369
Query: 237 SMNPVENEAVV 247
S+ P EN +
Sbjct: 370 SVLPEENSEQI 380
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 100 bits (251), Expect = 2e-22
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 34/190 (17%)
Query: 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128
V PL LD QP +LD CAAPG KT + E++ G + A D R L
Sbjct: 244 VAPL-LDPQPGEVILDACAAPGGKTTHIAELMGD--------QGEIWAVDRSASRLKKLQ 294
Query: 129 HQTKRMCTANLIVTNHEAQHFPGCRAN-KNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187
+R+ ++ + ++++ + + + FDR+L D PCS
Sbjct: 295 ENAQRLGLKSIKILAADSRNLLELKPQWRGY------------------FDRILLDAPCS 336
Query: 188 GDGTLRKAPDI-WR--KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 244
G GTL + PD WR + L LQ ++ LLK GG +VY+TC+++P ENE
Sbjct: 337 GLGTLHRHPDARWRQTPEKI---QELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE 393
Query: 245 AVVAEILRKC 254
A + + L +
Sbjct: 394 AQIEQFLARH 403
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 96.5 bits (240), Expect = 4e-21
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 40/230 (17%)
Query: 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117
G T Q S + PL ++++P VLD CAAPG KT + E++ ++A
Sbjct: 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGK--------ILAV 268
Query: 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177
D+ ++ L+ KR+ +++ + +A+ + Q F
Sbjct: 269 DISREKIQLVEKHAKRLKLSSIEIKIADAERL--------------------TEYVQDTF 308
Query: 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237
DR+L D PC+ GT R P++ R+ N L +Q++I + LL+ GG ++YSTC+
Sbjct: 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368
Query: 238 MNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIW 287
+ EN VV + + + E++D+ R L +++V +GIW
Sbjct: 369 VTKEENTEVVKRFVYE-QKDAEVIDI---------RDKLEEFEV--EGIW 406
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 91.4 bits (228), Expect = 2e-19
Identities = 62/200 (31%), Positives = 87/200 (43%), Gaps = 55/200 (27%)
Query: 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT-K 132
L Q VLD CAAPG KT +LE+ Q+ V+A D+D QR + + +
Sbjct: 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQ---------VVALDIDAQRLER-VRENLQ 289
Query: 133 RM-CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL----LFDRVLCDVPCS 187
R+ A +IV + + Q FDR+L D PCS
Sbjct: 290 RLGLKATVIVGDA-------------------------RDPAQWWDGQPFDRILLDAPCS 324
Query: 188 GDGTLRKAPDIWRKWNVGLG-----NGLHSLQVQI--AMRGISLLKVGGRIVYSTCSMNP 240
G +R+ PDI KW L L +LQ +I A+ LLK GG ++Y+TCS+ P
Sbjct: 325 ATGVIRRHPDI--KW---LRRPEDIAALAALQSEILDAL--WPLLKPGGTLLYATCSILP 377
Query: 241 VENEAVVAEILRKCEGSVEL 260
ENE + L + + L
Sbjct: 378 EENEQQIKAFLARHPDAELL 397
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 90.9 bits (226), Expect = 3e-19
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 36/209 (17%)
Query: 46 RFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTN 105
F FLKL G ++ Q + L L+ QP VLD+CAAPG K+ + E++
Sbjct: 222 LFEPFLKL----GLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNR-- 275
Query: 106 PGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF-PGCRANKNFSSASDK 164
G + A D Q+ + + + +A+ F P +
Sbjct: 276 ------GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQ----------- 318
Query: 165 GIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224
D +L D PC+G G L + ++ K L LQ ++ SL
Sbjct: 319 ------------PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366
Query: 225 LKVGGRIVYSTCSMNPVENEAVVAEILRK 253
LK GG +VY+TCS+ P ENE + L++
Sbjct: 367 LKPGGVLVYATCSIEPEENELQIEAFLQR 395
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 33.4 bits (76), Expect = 0.49
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 27/163 (16%)
Query: 315 DATDIEPKHGNVT-DVNSDEGLQQVEDVLTSADDLEEEVSDLP------LERCMRLVPHD 367
+A ++E VT D E + D DL+EEV+D+P L + P++
Sbjct: 3856 EARELESDMNGVTKDSVVSE--NENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNE 3913
Query: 368 QNSGAFFIAVLQKVSPLPVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNG---MEVDLA 424
++ + E+ E L +D K L+++D +E M D+
Sbjct: 3914 EDL---------LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVG 3964
Query: 425 DGTDEKDPEG-SLEANSIDNEDGAAVEPDPLTCEKVDSEETEV 466
+ + + +NED P+ L K+D +E +V
Sbjct: 3965 IDDEIQPDIQENNSQPPPENEDLDL--PEDL---KLDEKEGDV 4002
>gnl|CDD|132528 TIGR03489, cas_csp1, CRISPR-associated protein Cas7/Csp1, subtype
PGING. Members of this protein family are Csp1, a
CRISPR-associated (cas) gene marker for the Pging
subtype of CRISPR/cas system, as found in Porphyromonas
gingivalis W83 and Bacteroides forsythus ATCC 43037.
This protein belongs to the family of DevR (TIGR01875),
a regulator of development in Myxococcus xanthus located
in a cas gene region. A different branch of the DevR
family, Cst2 (TIGR02585), is a marker for the Tneap
subtype of CRISPR/cas system.
Length = 292
Score = 31.5 bits (71), Expect = 1.3
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 647 GEALSNPIQIDAST-------IAIGCWKGR--ASLSVM-VTAIDCQELLERLLMRLEIEK 696
G+ +SN I+ID G + R A LSV TA+D E+ LL+R++ +K
Sbjct: 63 GDGISNLIEIDLRADLGGFMHPNKGDYSDRRIAPLSVTPATALDESEIGRDLLVRIKFDK 122
Query: 697 GDLVQENALGTDEVQEE--MNDN 717
+ ++ AL T E E+ M+ N
Sbjct: 123 SEDAKDQALATKEFSEQDKMHMN 145
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 29.9 bits (68), Expect = 3.1
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119
L VLD+ AAPG + LLE G V+A DL
Sbjct: 18 LKPGKGKTVLDLGAAPGGFSQVLLE---------RGGAGKVVAVDL 54
>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria.
Length = 325
Score = 29.9 bits (68), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 282 RDKGIWLASH-----KHVRKFRRIGIVPSMFP 308
R +GI LASH +HV + +G+V S FP
Sbjct: 173 RARGIPLASHDDDTPEHVAEAHELGVVISEFP 204
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 28.0 bits (63), Expect = 6.4
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 386 VQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNED 445
+ +D KK ++++ E+ ++ D D D+ P+ + +D++D
Sbjct: 35 EVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94
Query: 446 GAAVEPD 452
+E D
Sbjct: 95 DDFLEDD 101
>gnl|CDD|178593 PLN03021, PLN03021, Low-temperature-induced protein; Provisional.
Length = 619
Score = 29.2 bits (64), Expect = 9.8
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 387 QEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGT---DEKDPE--GSLEANSI 441
E H K+L + + KK++N T+ NG + D+ D DE+DPE G+ S
Sbjct: 26 DEHHEKGASKVLKKVKEKAKKIKNSLTKHGNGHDHDVEDDDDEYDEQDPEVHGAPVYESS 85
Query: 442 DNEDGAAVEPDPLTCEKVDSEETEVPVNTE 471
G +P L+ + ET VP + E
Sbjct: 86 AVRGGVTGKPKSLS----HAGETNVPASEE 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,614,665
Number of extensions: 3596628
Number of successful extensions: 2711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2683
Number of HSP's successfully gapped: 26
Length of query: 731
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 627
Effective length of database: 6,324,786
Effective search space: 3965640822
Effective search space used: 3965640822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.0 bits)