Query 004776
Match_columns 731
No_of_seqs 323 out of 1568
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 3.9E-77 8.4E-82 607.7 18.8 211 169-382 1-229 (229)
2 PF01852 START: START domain; 99.7 4.6E-18 9.9E-23 169.6 10.2 199 174-379 1-201 (206)
3 smart00234 START in StAR and p 99.7 9.2E-17 2E-21 160.7 15.6 199 175-382 2-205 (206)
4 KOG0483 Transcription factor H 99.7 3.9E-17 8.4E-22 164.4 9.7 114 23-144 50-164 (198)
5 KOG0488 Transcription factor B 99.5 1.3E-14 2.8E-19 155.7 7.5 64 21-88 170-233 (309)
6 KOG0489 Transcription factor z 99.5 1.6E-14 3.5E-19 151.9 5.5 61 22-86 158-218 (261)
7 KOG0842 Transcription factor t 99.5 1.7E-14 3.7E-19 153.2 5.3 69 20-92 150-218 (307)
8 KOG0843 Transcription factor E 99.5 2.9E-14 6.3E-19 139.6 6.1 63 22-88 101-163 (197)
9 KOG0487 Transcription factor A 99.5 1.9E-14 4E-19 153.0 5.2 67 21-91 233-299 (308)
10 KOG0494 Transcription factor C 99.4 1.8E-13 3.8E-18 140.2 6.8 62 23-88 140-202 (332)
11 PF00046 Homeobox: Homeobox do 99.4 2.3E-13 4.9E-18 110.4 5.9 57 24-84 1-57 (57)
12 KOG0492 Transcription factor M 99.4 2E-13 4.3E-18 136.2 6.0 66 18-87 139-204 (246)
13 KOG0850 Transcription factor D 99.4 2.4E-13 5.1E-18 137.8 6.3 64 20-87 119-182 (245)
14 KOG0484 Transcription factor P 99.4 2.3E-13 5E-18 122.5 5.4 61 22-86 16-76 (125)
15 KOG0848 Transcription factor C 99.4 2E-13 4.2E-18 140.5 4.5 60 23-86 199-258 (317)
16 KOG0485 Transcription factor N 99.3 7.6E-13 1.6E-17 132.8 5.6 61 22-86 103-163 (268)
17 KOG0493 Transcription factor E 99.3 1.6E-12 3.5E-17 133.3 6.2 59 22-84 245-303 (342)
18 KOG2251 Homeobox transcription 99.3 1.5E-12 3.2E-17 131.5 5.2 64 20-87 34-97 (228)
19 cd00177 START Lipid-binding ST 99.3 2.1E-11 4.6E-16 118.9 12.0 185 178-379 2-189 (193)
20 cd00086 homeodomain Homeodomai 99.2 1.4E-11 3E-16 99.7 6.3 56 25-84 2-57 (59)
21 smart00389 HOX Homeodomain. DN 99.2 9.7E-12 2.1E-16 100.0 5.3 55 25-83 2-56 (56)
22 KOG0844 Transcription factor E 99.2 7.3E-12 1.6E-16 130.8 2.9 60 24-87 182-241 (408)
23 KOG0486 Transcription factor P 99.2 1.9E-11 4.2E-16 128.6 5.8 63 22-88 111-173 (351)
24 COG5576 Homeodomain-containing 99.2 2.7E-11 5.8E-16 118.5 6.3 62 22-87 50-111 (156)
25 KOG0491 Transcription factor B 99.1 1.5E-11 3.2E-16 119.1 2.4 63 22-88 99-161 (194)
26 TIGR01565 homeo_ZF_HD homeobox 99.1 6.2E-11 1.4E-15 97.7 4.8 52 24-79 2-57 (58)
27 cd08868 START_STARD1_3_like Ch 99.1 1.2E-09 2.6E-14 110.8 14.4 195 172-384 6-208 (208)
28 cd08871 START_STARD10-like Lip 99.1 2.2E-09 4.7E-14 110.0 14.0 191 177-386 9-205 (222)
29 KOG3802 Transcription factor O 99.0 7.9E-11 1.7E-15 128.0 2.7 60 22-85 293-352 (398)
30 cd08867 START_STARD4_5_6-like 99.0 3.5E-09 7.6E-14 107.3 14.3 189 172-379 3-202 (206)
31 cd08904 START_STARD6-like Lipi 99.0 3.3E-09 7.3E-14 108.2 14.2 168 173-353 4-178 (204)
32 KOG0847 Transcription factor, 99.0 1.7E-10 3.8E-15 116.0 3.9 61 24-88 168-228 (288)
33 KOG4577 Transcription factor L 99.0 4.2E-10 9E-15 117.1 5.2 68 22-93 166-234 (383)
34 cd08903 START_STARD5-like Lipi 98.9 3.2E-08 6.9E-13 101.0 14.5 188 173-379 4-202 (208)
35 cd08905 START_STARD1-like Chol 98.8 3E-08 6.5E-13 101.3 11.9 190 172-379 6-203 (209)
36 KOG0490 Transcription factor, 98.7 8.7E-09 1.9E-13 105.0 4.2 63 20-86 57-119 (235)
37 PLN00188 enhanced disease resi 98.7 5.1E-08 1.1E-12 113.5 10.1 129 219-355 227-365 (719)
38 cd08906 START_STARD3-like Chol 98.6 7.8E-07 1.7E-11 91.1 14.0 190 172-379 6-203 (209)
39 cd08869 START_RhoGAP C-termina 98.6 2.4E-07 5.1E-12 93.8 10.0 168 177-359 4-175 (197)
40 cd08909 START_STARD13-like C-t 98.6 2.3E-07 4.9E-12 94.9 9.8 128 219-357 52-181 (205)
41 KOG0849 Transcription factor P 98.5 9.6E-08 2.1E-12 105.0 5.8 62 21-86 174-235 (354)
42 cd08902 START_STARD4-like Lipi 98.3 3.5E-06 7.5E-11 85.8 10.2 166 173-353 4-176 (202)
43 KOG1168 Transcription factor A 98.3 3.5E-07 7.5E-12 95.8 2.1 62 21-86 307-368 (385)
44 KOG0775 Transcription factor S 98.2 1.5E-06 3.4E-11 90.7 4.6 51 30-84 183-233 (304)
45 cd08908 START_STARD12-like C-t 98.1 1.5E-05 3.3E-10 81.6 10.3 167 175-357 10-180 (204)
46 cd08874 START_STARD9-like C-te 98.1 1.9E-05 4.1E-10 81.0 10.0 126 222-356 48-181 (205)
47 cd08910 START_STARD2-like Lipi 97.9 4.3E-05 9.4E-10 78.2 8.2 150 218-382 48-205 (207)
48 cd08907 START_STARD8-like C-te 97.8 0.00016 3.5E-09 73.9 12.0 167 175-356 10-180 (205)
49 cd08872 START_STARD11-like Cer 97.7 0.00029 6.4E-09 73.6 12.3 169 175-353 7-199 (235)
50 cd08870 START_STARD2_7-like Li 97.7 0.0007 1.5E-08 69.2 13.9 191 178-382 6-207 (209)
51 KOG0774 Transcription factor P 97.6 3E-05 6.5E-10 80.7 3.0 58 23-84 188-248 (334)
52 cd08876 START_1 Uncharacterize 97.6 0.00041 8.9E-09 69.2 10.3 147 219-379 41-191 (195)
53 PF05920 Homeobox_KN: Homeobox 97.6 5.2E-05 1.1E-09 58.3 2.8 34 44-81 7-40 (40)
54 cd08873 START_STARD14_15-like 97.5 0.00019 4.1E-09 75.1 7.4 121 220-349 78-203 (235)
55 cd08877 START_2 Uncharacterize 97.4 0.0017 3.8E-08 66.4 12.5 175 173-357 4-190 (215)
56 cd08913 START_STARD14-like Lip 97.3 0.0021 4.6E-08 67.6 11.3 124 222-359 84-216 (240)
57 KOG0490 Transcription factor, 97.2 0.00046 1E-08 70.4 5.0 62 22-87 152-213 (235)
58 cd08914 START_STARD15-like Lip 97.1 0.0022 4.8E-08 67.2 9.5 131 220-362 79-215 (236)
59 KOG2252 CCAAT displacement pro 97.1 0.00078 1.7E-08 76.8 6.4 58 22-83 419-476 (558)
60 cd08911 START_STARD7-like Lipi 97.1 0.0012 2.6E-08 67.6 6.8 148 219-379 45-201 (207)
61 KOG1146 Homeobox protein [Gene 95.7 0.011 2.5E-07 73.2 5.1 62 23-88 903-964 (1406)
62 cd08871 START_STARD10-like Lip 95.6 1.2 2.5E-05 45.9 19.0 66 411-497 12-79 (222)
63 cd08904 START_STARD6-like Lipi 94.8 1.4 3E-05 45.5 16.4 174 422-687 20-203 (204)
64 PRK09413 IS2 repressor TnpA; R 94.7 0.13 2.8E-06 48.5 7.9 94 25-131 8-102 (121)
65 KOG0773 Transcription factor M 94.5 0.022 4.7E-07 62.5 2.5 58 23-84 239-299 (342)
66 PF11569 Homez: Homeodomain le 94.5 0.038 8.3E-07 45.7 3.3 42 34-79 9-50 (56)
67 cd08869 START_RhoGAP C-termina 94.2 3.8 8.2E-05 41.7 17.8 57 422-497 17-73 (197)
68 cd08877 START_2 Uncharacterize 93.7 3.3 7.2E-05 42.4 16.5 66 410-497 10-77 (215)
69 cd08874 START_STARD9-like C-te 93.4 0.53 1.2E-05 48.5 10.1 56 421-497 19-76 (205)
70 cd08907 START_STARD8-like C-te 93.4 9.6 0.00021 39.6 18.9 58 421-497 24-81 (205)
71 cd08876 START_1 Uncharacterize 92.3 9.7 0.00021 37.9 17.2 60 418-497 10-72 (195)
72 cd00177 START Lipid-binding ST 92.1 10 0.00022 36.8 16.6 127 424-606 15-149 (193)
73 KOG4005 Transcription factor X 91.7 1 2.2E-05 47.2 9.3 57 75-131 81-142 (292)
74 KOG4196 bZIP transcription fac 91.3 5.3 0.00011 38.6 12.9 39 28-82 22-60 (135)
75 cd08864 SRPBCC_DUF3074 DUF3074 91.0 0.25 5.4E-06 51.0 4.2 109 242-356 66-183 (208)
76 PF00170 bZIP_1: bZIP transcri 90.2 1.4 3E-05 36.9 7.3 45 79-123 19-63 (64)
77 cd08868 START_STARD1_3_like Ch 88.5 11 0.00025 38.3 14.0 130 422-606 22-160 (208)
78 cd08909 START_STARD13-like C-t 88.4 29 0.00064 36.0 16.9 55 424-497 27-81 (205)
79 cd08906 START_STARD3-like Chol 88.1 35 0.00075 35.2 17.6 71 405-497 8-81 (209)
80 KOG2761 START domain-containin 87.8 0.82 1.8E-05 47.6 5.1 111 228-347 63-183 (219)
81 cd08908 START_STARD12-like C-t 86.6 28 0.0006 36.1 15.5 55 424-497 27-81 (204)
82 cd08875 START_ArGLABRA2_like C 86.2 13 0.00029 39.2 13.0 164 402-606 3-181 (229)
83 smart00234 START in StAR and p 85.7 13 0.00029 37.1 12.5 105 465-606 43-157 (206)
84 PF01852 START: START domain; 85.1 29 0.00063 34.5 14.6 149 406-606 2-157 (206)
85 smart00338 BRLZ basic region l 83.8 4.8 0.0001 33.7 7.0 34 98-131 31-64 (65)
86 smart00340 HALZ homeobox assoc 82.6 2.5 5.3E-05 33.2 4.3 26 96-121 8-33 (44)
87 PF02183 HALZ: Homeobox associ 82.2 4.6 9.9E-05 32.1 5.8 39 92-130 4-42 (45)
88 KOG3623 Homeobox transcription 79.7 2.4 5.2E-05 50.7 4.9 48 35-86 568-615 (1007)
89 cd08873 START_STARD14_15-like 79.1 3 6.5E-05 44.1 5.1 54 422-497 53-108 (235)
90 cd08870 START_STARD2_7-like Li 79.1 4.2 9.1E-05 41.6 6.1 58 423-497 21-82 (209)
91 PF04218 CENP-B_N: CENP-B N-te 79.0 3.3 7.3E-05 33.7 4.2 47 24-79 1-47 (53)
92 cd08866 SRPBCC_11 Ligand-bindi 77.3 30 0.00065 32.2 10.9 132 222-382 2-143 (144)
93 cd08910 START_STARD2-like Lipi 76.8 5.2 0.00011 41.1 6.0 65 414-497 13-81 (207)
94 KOG4005 Transcription factor X 76.6 15 0.00033 38.8 9.2 47 85-131 103-149 (292)
95 TIGR00219 mreC rod shape-deter 72.7 6.9 0.00015 42.4 5.9 35 98-132 71-109 (283)
96 PRK00888 ftsB cell division pr 71.2 14 0.00029 34.4 6.7 47 68-114 14-62 (105)
97 cd08911 START_STARD7-like Lipi 70.7 6.5 0.00014 40.3 4.9 57 422-497 19-77 (207)
98 cd08914 START_STARD15-like Lip 70.2 6.9 0.00015 41.5 5.1 55 421-497 53-109 (236)
99 PRK13922 rod shape-determining 70.1 8.6 0.00019 41.0 5.9 36 97-132 73-111 (276)
100 PF07716 bZIP_2: Basic region 68.8 17 0.00037 29.5 6.0 23 110-132 28-50 (54)
101 KOG3119 Basic region leucine z 68.8 11 0.00024 40.6 6.3 28 103-130 225-252 (269)
102 PF06005 DUF904: Protein of un 68.4 27 0.00058 30.5 7.4 36 96-131 21-56 (72)
103 PF02183 HALZ: Homeobox associ 68.2 15 0.00032 29.3 5.3 36 98-133 3-38 (45)
104 cd08860 TcmN_ARO-CYC_like N-te 67.6 32 0.0007 33.3 8.8 107 223-351 5-113 (146)
105 cd08905 START_STARD1-like Chol 67.3 1.6E+02 0.0034 30.3 16.4 73 403-497 6-81 (209)
106 cd05018 CoxG Carbon monoxide d 66.6 47 0.001 30.5 9.4 120 223-363 5-124 (144)
107 smart00338 BRLZ basic region l 65.6 42 0.00091 28.0 8.0 45 79-123 19-63 (65)
108 cd08913 START_STARD14-like Lip 65.2 9.6 0.00021 40.4 4.9 55 421-497 56-112 (240)
109 cd08903 START_STARD5-like Lipi 65.0 11 0.00023 38.8 5.2 56 422-497 20-79 (208)
110 cd07813 COQ10p_like Coenzyme Q 64.0 39 0.00085 31.4 8.4 134 223-383 3-137 (138)
111 KOG4571 Activating transcripti 63.2 18 0.00039 39.4 6.5 33 98-130 253-285 (294)
112 PF00170 bZIP_1: bZIP transcri 61.8 59 0.0013 27.1 8.1 36 95-130 28-63 (64)
113 KOG4196 bZIP transcription fac 61.3 39 0.00085 32.8 7.6 22 110-131 84-105 (135)
114 cd08872 START_STARD11-like Cer 60.9 26 0.00057 36.9 7.3 64 416-497 18-84 (235)
115 KOG0709 CREB/ATF family transc 59.6 27 0.00059 40.3 7.4 41 97-137 276-316 (472)
116 TIGR03752 conj_TIGR03752 integ 58.9 33 0.00072 39.8 8.0 26 29-57 41-66 (472)
117 KOG4343 bZIP transcription fac 58.6 15 0.00033 42.9 5.2 29 105-133 307-335 (655)
118 PF06005 DUF904: Protein of un 58.2 56 0.0012 28.6 7.6 46 87-132 19-64 (72)
119 cd07821 PYR_PYL_RCAR_like Pyra 57.9 1.4E+02 0.0031 26.8 11.1 35 224-258 6-40 (140)
120 PRK10724 hypothetical protein; 57.4 81 0.0018 31.2 9.6 134 222-384 18-154 (158)
121 cd08861 OtcD1_ARO-CYC_like N-t 57.2 36 0.00077 31.6 6.8 32 224-255 4-37 (142)
122 PRK10884 SH3 domain-containing 57.2 46 0.00099 34.7 8.1 41 92-132 131-171 (206)
123 PRK15422 septal ring assembly 55.1 47 0.001 29.7 6.5 43 89-131 21-63 (79)
124 COG4026 Uncharacterized protei 53.8 61 0.0013 34.3 8.2 46 88-133 144-189 (290)
125 PF07407 Seadorna_VP6: Seadorn 52.9 20 0.00044 39.6 4.8 29 580-608 337-375 (420)
126 KOG3119 Basic region leucine z 51.5 47 0.001 35.8 7.4 34 102-135 217-250 (269)
127 COG3074 Uncharacterized protei 50.2 95 0.0021 27.2 7.4 42 90-131 22-63 (79)
128 PLN00188 enhanced disease resi 49.2 82 0.0018 38.5 9.5 96 477-606 236-341 (719)
129 PF15290 Syntaphilin: Golgi-lo 49.1 2.8E+02 0.006 30.5 12.4 57 78-134 73-137 (305)
130 cd08902 START_STARD4-like Lipi 48.9 3.4E+02 0.0073 28.4 17.3 57 421-497 20-78 (202)
131 PF01166 TSC22: TSC-22/dip/bun 48.5 24 0.00053 29.7 3.6 31 100-130 14-44 (59)
132 PF06156 DUF972: Protein of un 48.5 65 0.0014 30.2 6.9 36 98-133 20-55 (107)
133 cd07819 SRPBCC_2 Ligand-bindin 47.5 1.5E+02 0.0033 26.8 9.3 109 223-352 6-114 (140)
134 TIGR02894 DNA_bind_RsfA transc 46.6 63 0.0014 32.5 6.8 40 92-131 103-142 (161)
135 KOG4343 bZIP transcription fac 45.8 59 0.0013 38.3 7.3 46 82-127 298-343 (655)
136 KOG4571 Activating transcripti 45.4 69 0.0015 35.1 7.4 43 79-121 241-283 (294)
137 PRK13169 DNA replication intia 44.7 81 0.0018 29.8 6.9 36 98-133 20-55 (110)
138 PF04977 DivIC: Septum formati 44.4 50 0.0011 28.0 5.2 22 111-132 28-49 (80)
139 TIGR02449 conserved hypothetic 44.1 1.1E+02 0.0023 26.5 6.8 35 97-131 11-45 (65)
140 PF14197 Cep57_CLD_2: Centroso 43.5 1.6E+02 0.0035 25.5 8.0 32 100-131 26-64 (69)
141 PRK00888 ftsB cell division pr 43.1 46 0.00099 31.0 5.0 30 91-120 32-61 (105)
142 PF15058 Speriolin_N: Sperioli 42.5 49 0.0011 34.2 5.4 38 96-134 8-45 (200)
143 PF14197 Cep57_CLD_2: Centroso 42.4 1.3E+02 0.0028 26.1 7.3 14 110-123 50-63 (69)
144 PRK10884 SH3 domain-containing 41.7 2.5E+02 0.0054 29.3 10.6 38 96-133 128-165 (206)
145 PF12808 Mto2_bdg: Micro-tubul 40.5 58 0.0013 26.9 4.6 24 110-133 25-48 (52)
146 TIGR03752 conj_TIGR03752 integ 40.3 1.1E+02 0.0025 35.6 8.5 22 88-109 75-96 (472)
147 cd08867 START_STARD4_5_6-like 39.9 63 0.0014 32.8 5.9 67 405-497 9-79 (206)
148 PF15035 Rootletin: Ciliary ro 39.7 1E+02 0.0022 31.6 7.2 46 86-131 74-119 (182)
149 PF05812 Herpes_BLRF2: Herpesv 39.6 37 0.00079 32.5 3.8 25 109-133 5-29 (118)
150 PF07407 Seadorna_VP6: Seadorn 39.2 72 0.0016 35.5 6.4 30 87-116 33-62 (420)
151 cd06171 Sigma70_r4 Sigma70, re 38.9 35 0.00075 25.6 3.0 44 29-81 10-53 (55)
152 PF12711 Kinesin-relat_1: Kine 38.6 76 0.0017 28.8 5.4 36 101-136 25-66 (86)
153 PF10604 Polyketide_cyc2: Poly 38.4 3E+02 0.0064 24.8 13.2 36 223-258 6-41 (139)
154 TIGR02894 DNA_bind_RsfA transc 38.4 1.2E+02 0.0027 30.5 7.4 49 86-134 104-152 (161)
155 PRK13729 conjugal transfer pil 38.3 1.1E+02 0.0023 35.9 7.9 47 87-133 77-123 (475)
156 cd04766 HTH_HspR Helix-Turn-He 38.1 1.2E+02 0.0026 26.9 6.7 74 53-132 4-90 (91)
157 TIGR02209 ftsL_broad cell divi 37.2 89 0.0019 27.1 5.7 25 109-133 33-57 (85)
158 PF08172 CASP_C: CASP C termin 36.9 1E+02 0.0023 33.0 7.2 46 92-137 92-137 (248)
159 PHA03162 hypothetical protein; 36.8 40 0.00086 32.8 3.6 25 109-133 15-39 (135)
160 PF04545 Sigma70_r4: Sigma-70, 36.7 72 0.0016 24.9 4.6 40 29-77 4-43 (50)
161 PHA03155 hypothetical protein; 36.3 41 0.00089 32.0 3.5 25 109-133 10-34 (115)
162 PF10883 DUF2681: Protein of u 35.8 1.1E+02 0.0023 27.9 6.0 33 95-132 32-64 (87)
163 PF01527 HTH_Tnp_1: Transposas 35.7 26 0.00057 29.5 2.0 44 25-76 2-45 (76)
164 PF04967 HTH_10: HTH DNA bindi 35.2 55 0.0012 26.9 3.7 39 30-72 1-41 (53)
165 COG1792 MreC Cell shape-determ 34.6 96 0.0021 33.8 6.6 36 98-133 71-109 (284)
166 KOG3755 SATB1 matrix attachmen 34.6 14 0.0003 43.7 0.2 61 24-86 692-758 (769)
167 KOG0288 WD40 repeat protein Ti 33.3 1.6E+02 0.0036 33.8 8.1 45 89-133 30-74 (459)
168 cd04765 HTH_MlrA-like_sg2 Heli 33.1 62 0.0013 29.6 4.1 21 53-77 3-23 (99)
169 PF04999 FtsL: Cell division p 33.0 1E+02 0.0022 27.7 5.5 29 105-133 40-68 (97)
170 cd08865 SRPBCC_10 Ligand-bindi 32.9 3.6E+02 0.0078 24.1 10.9 37 224-260 4-40 (140)
171 PF09744 Jnk-SapK_ap_N: JNK_SA 32.7 4.1E+02 0.009 26.6 10.1 29 103-131 85-113 (158)
172 PRK03975 tfx putative transcri 32.6 1.4E+02 0.003 29.5 6.7 48 27-84 4-51 (141)
173 PF14662 CCDC155: Coiled-coil 31.9 1.5E+02 0.0033 30.7 7.0 43 91-133 79-121 (193)
174 TIGR02449 conserved hypothetic 31.6 2.7E+02 0.0058 24.1 7.3 44 90-133 11-54 (65)
175 cd00569 HTH_Hin_like Helix-tur 30.2 1.1E+02 0.0025 20.1 4.3 38 29-75 5-42 (42)
176 KOG1962 B-cell receptor-associ 30.2 1.5E+02 0.0032 31.3 6.7 18 92-109 150-167 (216)
177 PF10224 DUF2205: Predicted co 30.0 2.7E+02 0.006 24.9 7.5 43 91-133 21-63 (80)
178 PF06156 DUF972: Protein of un 29.3 1.4E+02 0.003 28.1 5.8 40 98-137 13-52 (107)
179 PF07716 bZIP_2: Basic region 29.2 3.1E+02 0.0067 22.1 8.0 28 79-106 18-45 (54)
180 PF07558 Shugoshin_N: Shugoshi 29.1 49 0.0011 26.4 2.4 37 94-130 8-44 (46)
181 cd04769 HTH_MerR2 Helix-Turn-H 28.8 3.4E+02 0.0073 25.2 8.4 38 26-80 34-71 (116)
182 PF10226 DUF2216: Uncharacteri 28.2 2.4E+02 0.0052 29.2 7.7 21 89-109 58-78 (195)
183 PRK13922 rod shape-determining 27.8 96 0.0021 33.1 5.2 38 100-137 69-109 (276)
184 PF13936 HTH_38: Helix-turn-he 27.2 75 0.0016 24.7 3.1 42 26-76 1-42 (44)
185 PF11932 DUF3450: Protein of u 27.2 3.4E+02 0.0074 28.6 9.1 44 90-133 53-96 (251)
186 COG3879 Uncharacterized protei 26.7 1.9E+02 0.0041 31.1 6.9 68 70-137 34-105 (247)
187 KOG2391 Vacuolar sorting prote 25.2 2.4E+02 0.0053 31.7 7.6 47 84-130 223-269 (365)
188 cd07822 SRPBCC_4 Ligand-bindin 24.3 5.2E+02 0.011 23.1 10.4 32 223-254 4-35 (141)
189 PTZ00454 26S protease regulato 24.3 2.2E+02 0.0047 32.5 7.4 36 98-133 27-62 (398)
190 PF11365 DUF3166: Protein of u 24.2 5.9E+02 0.013 23.7 8.9 41 96-136 4-44 (96)
191 KOG4403 Cell surface glycoprot 24.0 2.1E+02 0.0047 33.1 7.0 13 72-84 229-244 (575)
192 PF07334 IFP_35_N: Interferon- 23.7 1.4E+02 0.0029 26.7 4.3 28 104-131 4-31 (76)
193 PF10828 DUF2570: Protein of u 23.6 5.4E+02 0.012 23.9 8.7 39 95-133 48-86 (110)
194 PRK14872 rod shape-determining 23.3 1.8E+02 0.0038 32.7 6.2 38 89-130 60-97 (337)
195 PF00038 Filament: Intermediat 22.9 4.3E+02 0.0094 28.4 9.1 62 68-131 186-247 (312)
196 PF03670 UPF0184: Uncharacteri 22.5 5.4E+02 0.012 23.3 7.9 41 93-133 33-73 (83)
197 cd07429 Cby_like Chibby, a nuc 22.5 1.1E+02 0.0024 28.9 3.8 27 107-133 72-98 (108)
198 PF06210 DUF1003: Protein of u 22.4 2.8E+02 0.0062 26.1 6.5 44 76-120 57-100 (108)
199 PF08961 DUF1875: Domain of un 22.4 29 0.00063 36.5 0.0 36 91-126 127-162 (243)
200 PF07888 CALCOCO1: Calcium bin 22.3 2.9E+02 0.0063 33.0 8.0 57 75-133 141-197 (546)
201 cd01106 HTH_TipAL-Mta Helix-Tu 22.0 5.9E+02 0.013 23.0 9.0 36 26-78 35-70 (103)
202 PF13815 Dzip-like_N: Iguana/D 22.0 2.9E+02 0.0062 26.0 6.6 35 95-129 82-116 (118)
203 PRK13169 DNA replication intia 21.9 2.3E+02 0.005 26.8 5.8 38 98-135 13-50 (110)
204 PF15397 DUF4618: Domain of un 21.3 4.2E+02 0.0092 28.7 8.4 36 100-135 186-221 (258)
205 PF11594 Med28: Mediator compl 20.7 4.9E+02 0.011 24.7 7.6 16 69-84 18-33 (106)
206 KOG3584 cAMP response element 20.7 1.3E+02 0.0029 33.0 4.4 25 88-112 314-338 (348)
207 PF06785 UPF0242: Uncharacteri 20.6 3.7E+02 0.0081 30.3 7.8 63 73-135 53-120 (401)
208 KOG2761 START domain-containin 20.4 90 0.0019 32.9 3.1 59 420-497 25-85 (219)
209 PF15254 CCDC14: Coiled-coil d 20.4 3.6E+02 0.0079 33.5 8.3 61 71-133 435-506 (861)
210 PF01486 K-box: K-box region; 20.4 3.1E+02 0.0068 24.8 6.3 31 101-131 69-99 (100)
211 KOG4797 Transcriptional regula 20.3 2E+02 0.0043 27.3 4.9 31 98-128 65-95 (123)
212 PF05529 Bap31: B-cell recepto 20.1 3.3E+02 0.0072 27.4 7.1 55 79-133 133-187 (192)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=3.9e-77 Score=607.70 Aligned_cols=211 Identities=36% Similarity=0.618 Sum_probs=194.7
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCcceeeCCCCCC---CCCccceeec------cCCCccccccceeEEeeChhHHHHHhc
Q 004776 169 PAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKP---GPDSIGIVAI------SHGCTGVAARACGLVGLDPTRVAEILK 239 (731)
Q Consensus 169 ~~~l~~lA~~am~Ell~la~~~eplWi~~~g~~~---g~~~~~~~~~------~~~~~~EASR~~glV~m~~~~LVe~lm 239 (731)
+++|++||++||+||++||++++|+|++++|+++ ++|.|+..+. +.||++||||+||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 3579999999999999999999999999999876 7777754332 336999999999999999999999999
Q ss_pred CcchhhhhCCcc----eEeeeccCCC----cchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCC
Q 004776 240 DRPSWYRDCRSV----EVVNVLPTGS----SGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNG 311 (731)
Q Consensus 240 D~~~W~~~f~~~----~~l~~~~~g~----~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~ 311 (731)
|+++|.++||++ +|+.++++|+ +|+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999999876 8999999996 7899999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-HHHh
Q 004776 312 PSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHLR 382 (731)
Q Consensus 312 ~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aL-r~~e 382 (731)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++| ||||
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33455789999999999999999999999999999999999999999999999999999999999 7997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=4.6e-18 Score=169.61 Aligned_cols=199 Identities=30% Similarity=0.411 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHHHHhcCcc-hhhhhCCcce
Q 004776 174 SIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILKDRP-SWYRDCRSVE 252 (731)
Q Consensus 174 ~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lmD~~-~W~~~f~~~~ 252 (731)
++|++++.+++++++.++..|....+.+++...+.....+.++....-|..++|...+.++++.|+|.. +|-.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999996422222222222222222467889999999999999999999988 9999999999
Q ss_pred EeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCC-CCccccccccCCcce
Q 004776 253 VVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQ-APHFVRAEMLPSGYL 331 (731)
Q Consensus 253 ~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~-~~~~~r~~rlPSGcl 331 (731)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|+|.... ++ .+.++|+..++||++
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~----~~~~~~~VR~~~~~s~~~ 153 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQY----PPNSKGYVRAEILISGWV 153 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTS----STT-TTSEEEEEESEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccc----cccccCcceeeeeeEeEE
Confidence 99998865 455556677788889999 99999999999999999999999986432 23 457899999999999
Q ss_pred EeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 004776 332 IRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (731)
Q Consensus 332 Iq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr 379 (731)
|++.++|.|+||+|-|++..-+...-+++.++.+...-..+.+.++|+
T Consensus 154 i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~ 201 (206)
T PF01852_consen 154 IRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALK 201 (206)
T ss_dssp EEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988899999999998887777777775
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.72 E-value=9.2e-17 Score=160.68 Aligned_cols=199 Identities=31% Similarity=0.465 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhH-HHHHhcCc---chhhhhCCc
Q 004776 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTR-VAEILKDR---PSWYRDCRS 250 (731)
Q Consensus 175 lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~-LVe~lmD~---~~W~~~f~~ 250 (731)
-|++++.|+++++...+..|....+.+.+..++.... ..+..+.+-|..++|...+.+ +.++|+|. .+|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 3688999999999999999999754345544443221 112456899999999999997 66788787 789999999
Q ss_pred ceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcc
Q 004776 251 VEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (731)
Q Consensus 251 ~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 330 (731)
.++|+.++.+. .++|.-+..|-++++.|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||+
T Consensus 81 ~~~ie~~~~~~----~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~ 152 (206)
T smart00234 81 AETLEVIDNGT----VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGL 152 (206)
T ss_pred EEEEEEECCCC----eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEE
Confidence 99999887542 2333222233213566999999999999999999999999853 334456899999999999
Q ss_pred eEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHh
Q 004776 331 LIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (731)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e 382 (731)
+|+++++|.|+|||+.|++..-+..+-+.+.++.++.....+.+.++++ +|+
T Consensus 153 ~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 153 LIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred EEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999877889999999999889999999885 675
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.70 E-value=3.9e-17 Score=164.39 Aligned_cols=114 Identities=34% Similarity=0.477 Sum_probs=99.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMN 102 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n 102 (731)
..+++.|||.+|+..||+.|+.+.+..+.++..||++| ||.++||++||||||||||.++.+ .+.+.|+.+.
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE----~d~~~Lk~~~ 121 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLE----KDYESLKRQL 121 (198)
T ss_pred cccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhh----hhHHHHHHHH
Confidence 45677899999999999999999999999999999999 999999999999999999998766 5666789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-hhcccCCCCCc
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA-ATLATTDTSCE 144 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~-~~~~~~~~s~~ 144 (731)
+.++.++++|+.+++.|+.|...++.+.++. .....+++.|.
T Consensus 122 ~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T KOG0483|consen 122 ESLRSENDRLQSEVQELVAELSSLKREMQKSPENTLTMCPNSE 164 (198)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhhhccCcccccccCcccc
Confidence 9999999999999999999988888887773 23333455554
No 5
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.52 E-value=1.3e-14 Score=155.70 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=60.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+++||.|+.||..|+..||+.|++.+|.+..+|.+||+.| ||+..|||+||||||+||||..+.
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 5667889999999999999999999999999999999999 999999999999999999996544
No 6
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.49 E-value=1.6e-14 Score=151.94 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=58.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..||.|+.||..|+.+||+.|+.++|.+..+|.|||..| +|+++||||||||||+||||.+
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~ 218 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKEN 218 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999999 9999999999999999999854
No 7
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.49 E-value=1.7e-14 Score=153.21 Aligned_cols=69 Identities=29% Similarity=0.496 Sum_probs=62.2
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHHHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 92 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~~~l~ 92 (731)
..++||+|.-||..|+.+||+.|+.++|.+..+|++||..| +|++.||||||||||-|+||++....+.
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~~ 218 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKALE 218 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhhh
Confidence 44667888899999999999999999999999999999999 9999999999999999999976554333
No 8
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.49 E-value=2.9e-14 Score=139.62 Aligned_cols=63 Identities=30% Similarity=0.488 Sum_probs=59.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+.+|.|+.||++|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||.+.+
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHH
Confidence 457889999999999999999999999999999999999 999999999999999999996654
No 9
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.49 E-value=1.9e-14 Score=152.95 Aligned_cols=67 Identities=33% Similarity=0.463 Sum_probs=61.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRL 91 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~~~l 91 (731)
+..||||.-||+.|+.+||+.|-.|.|.+..+|.+|++.| +|++|||||||||||.|+||..++.++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~ 299 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRL 299 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhc
Confidence 5668999999999999999999999999999999999999 999999999999999999996644333
No 10
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.42 E-value=1.8e-13 Score=140.16 Aligned_cols=62 Identities=27% Similarity=0.517 Sum_probs=57.2
Q ss_pred CCCC-cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 23 DNGK-YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 23 ~rrk-R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+||. |+.||..|+++||+.|++.+||+...|+-||-++ .|.+..|+|||||||+||||+++.
T Consensus 140 kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 140 KRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred ccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 3444 8899999999999999999999999999999999 999999999999999999996654
No 11
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.42 E-value=2.3e-13 Score=110.40 Aligned_cols=57 Identities=42% Similarity=0.739 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
+|+|+.||.+|+..||..|..++||+..++..||.++ ||++.||++||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 4788999999999999999999999999999999999 99999999999999999986
No 12
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.41 E-value=2e-13 Score=136.18 Aligned_cols=66 Identities=30% Similarity=0.460 Sum_probs=60.8
Q ss_pred CccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 18 QKMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 18 ~~~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
.+++.+|+.|+-||..|+..||+.|++.+|.+..+|.+++..| .|++.||||||||||+|.||-|+
T Consensus 139 rKhk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 139 RKHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHHH
Confidence 3455678889999999999999999999999999999999999 99999999999999999998543
No 13
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.41 E-value=2.4e-13 Score=137.78 Aligned_cols=64 Identities=27% Similarity=0.380 Sum_probs=59.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
.++-||.||.|+.-||+.|.+.|++++|.--.+|.+||..| ||+..||||||||||.|.||..+
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHHHh
Confidence 34557889999999999999999999999999999999999 99999999999999999998543
No 14
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.40 E-value=2.3e-13 Score=122.55 Aligned_cols=61 Identities=25% Similarity=0.533 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+.+|-|+.||..|+.+||+.|.+.+||+...|++||.++ .|++..|+|||||||+|.||+.
T Consensus 16 KQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 16 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHHH
Confidence 456889999999999999999999999999999999999 9999999999999999999844
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.39 E-value=2e-13 Score=140.55 Aligned_cols=60 Identities=30% Similarity=0.526 Sum_probs=55.8
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+-|-|..||..|+.+||+.|...+|.+..++.|||..| +|++|||||||||||+|+||.+
T Consensus 199 kDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~n 258 (317)
T KOG0848|consen 199 KDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDN 258 (317)
T ss_pred ccceeEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHH
Confidence 34557899999999999999999999999999999999 9999999999999999999844
No 16
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.35 E-value=7.6e-13 Score=132.76 Aligned_cols=61 Identities=28% Similarity=0.357 Sum_probs=57.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++||.|+.|+..|+-.||..|+...|.+..+|.-||++| .|++.||||||||||.||||+-
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHHH
Confidence 567788999999999999999999999999999999999 9999999999999999999953
No 17
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.32 E-value=1.6e-12 Score=133.26 Aligned_cols=59 Identities=32% Similarity=0.552 Sum_probs=56.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+|.|+-||.+|++.|...|+++.|.+..+|++|+.+| +|.+.||||||||+|+|.||
T Consensus 245 eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 245 EEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred hhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhh
Confidence 447889999999999999999999999999999999999 99999999999999999998
No 18
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.31 E-value=1.5e-12 Score=131.50 Aligned_cols=64 Identities=25% Similarity=0.516 Sum_probs=60.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
.++.+|.|++||..|+++||..|.+..|||...|++||.+| +|.+.+|||||+|||+|+|+++.
T Consensus 34 pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 34 PRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred chhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhh
Confidence 34668999999999999999999999999999999999999 99999999999999999998553
No 19
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.29 E-value=2.1e-11 Score=118.93 Aligned_cols=185 Identities=24% Similarity=0.384 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHHHHhcC---cchhhhhCCcceEe
Q 004776 178 ETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILKD---RPSWYRDCRSVEVV 254 (731)
Q Consensus 178 ~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lmD---~~~W~~~f~~~~~l 254 (731)
++..+++.+.+.+ ..|-..... .|-..+... ..+.....-|..+.|..++.++.++|+| +.+|-..|...+++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~vy~~~--~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVKIYTKP--YEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEEEEEec--CCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 4667788887765 679885321 121112110 1122346789999999999999999999 77788888888888
Q ss_pred eeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcceEee
Q 004776 255 NVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRP 334 (731)
Q Consensus 255 ~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 334 (731)
..+..+ ..++|..+..|.| ++.|||.++|++.+.++|.++|+..|+|.. ..|....++|++.+++|++|++
T Consensus 78 ~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 78 EEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEE
Confidence 887643 5677888889999 999999999999999999999999999863 2233347899999999999999
Q ss_pred cCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 004776 335 CEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (731)
Q Consensus 335 ~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr 379 (731)
+++|.|+||++-|++..-+... .++++.+.-+...++..++
T Consensus 149 ~~~~~~~vt~~~~~D~~g~iP~----~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 149 LDPGKTKVTYVLQVDPKGSIPK----SLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred CCCCCEEEEEEEeeCCCCCccH----HHHHhhhhhccHHHHHHHH
Confidence 9999999999999998865433 4555555444444444443
No 20
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.24 E-value=1.4e-11 Score=99.73 Aligned_cols=56 Identities=43% Similarity=0.795 Sum_probs=53.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
+++..++.+|+..||.+|..++||+..++.+||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999999999 99999999999999999886
No 21
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.24 E-value=9.7e-12 Score=100.02 Aligned_cols=55 Identities=42% Similarity=0.736 Sum_probs=51.8
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~K 83 (731)
+.|++++++|+..||..|..++||+..++.+||.++ ||+.+||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 556789999999999999999999999999999999 9999999999999998754
No 22
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.19 E-value=7.3e-12 Score=130.80 Aligned_cols=60 Identities=33% Similarity=0.483 Sum_probs=56.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
||-|+-||.+|+..||+.|-+..|.+.++|.+||..| ||.+..|||||||||.|+||++.
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhhhh
Confidence 6778999999999999999999999999999999999 99999999999999999998553
No 23
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.18 E-value=1.9e-11 Score=128.57 Aligned_cols=63 Identities=22% Similarity=0.489 Sum_probs=59.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+++|.|+.||..|+++||..|+++.||+...|++||.-. +|++..|++||+|||+||||++.+
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhh
Confidence 567889999999999999999999999999999999999 999999999999999999997765
No 24
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.18 E-value=2.7e-11 Score=118.50 Aligned_cols=62 Identities=39% Similarity=0.620 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
..+++|+|.|.+|+..|++.|+.||||+...|..|+..| +|+++-|++||||||++.|++..
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~~ 111 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKRS 111 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhcc
Confidence 457889999999999999999999999999999999999 99999999999999999998543
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.14 E-value=1.5e-11 Score=119.13 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=58.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
.++|.|+.|+..|+..||+.|+...|.+-.+|.+||..| +|+++|||.||||||.|.||.+++
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~ 161 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRN 161 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhc
Confidence 446779999999999999999999999999999999999 999999999999999999996655
No 26
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.12 E-value=6.2e-11 Score=97.73 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=50.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhcCccCCCChhhhhhhhhhhh
Q 004776 24 NGKYVRYTPEQVEALERLYHECPK----PSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~----Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRR 79 (731)
+|.|+.||++|++.||..|..++| |+...+.+||.++ ||++++|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999964
No 27
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.10 E-value=1.2e-09 Score=110.79 Aligned_cols=195 Identities=22% Similarity=0.329 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHHHHh-cC---cchhhhh
Q 004776 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEIL-KD---RPSWYRD 247 (731)
Q Consensus 172 l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~l-mD---~~~W~~~ 247 (731)
...++++|++|++.+.. ++-|-.....+.|--++.. .. .+ .+-.-|..++|...+..+.+.| .| +.+|-..
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i~i~~r-~~-~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWGDVVYSR-NV-PG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCCCEEEEE-Ec-CC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecCc
Confidence 46789999999999954 5589875321112111111 11 12 2356899999999999987654 44 5789999
Q ss_pred CCcceEeeeccCCCcchHHHHHHHhhcc-ccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCcccccccc
Q 004776 248 CRSVEVVNVLPTGSSGTIELLYMQLYAP-TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEML 326 (731)
Q Consensus 248 f~~~~~l~~~~~g~~G~lqLm~aE~~v~-SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 326 (731)
|-..++|+.+... ..++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..+
T Consensus 81 ~~~~~~i~~~d~~----~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~~ 151 (208)
T cd08868 81 VLECKIIQVIDDN----TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGENG 151 (208)
T ss_pred ccceEEEEEecCC----cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEecc
Confidence 9988888887632 22333222222 2589999999999999865 779999999873 234556789999999
Q ss_pred CCcceEeecCC--CccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHhhh
Q 004776 327 PSGYLIRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 384 (731)
Q Consensus 327 PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e~l 384 (731)
++|++|+++++ +.|+|||+-|++..-+ +|. -++++.+.-+.-.++..|| +|+.|
T Consensus 152 ~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 152 PGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred ccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 99999999987 6899999999998755 443 3366666667777888886 77653
No 28
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.05 E-value=2.2e-09 Score=110.00 Aligned_cols=191 Identities=20% Similarity=0.286 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEE-eeChhHHHHHhcC---cchhhhhCCcc
Q 004776 177 EETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLV-GLDPTRVAEILKD---RPSWYRDCRSV 251 (731)
Q Consensus 177 ~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~~~ 251 (731)
++.+++|+.++..+ .-|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+| +.+|-..|-..
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~ 83 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIES 83 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhcee
Confidence 78999999999654 47987532 222 222211 122233456777765 5788899999999 58898888888
Q ss_pred eEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcce
Q 004776 252 EVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYL 331 (731)
Q Consensus 252 ~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGcl 331 (731)
++|..+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++. +..|+...++|.....+|++
T Consensus 84 ~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~~ 153 (222)
T cd08871 84 FDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGYL 153 (222)
T ss_pred EEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEEE
Confidence 888877532 3567777888888 8999999999998766 888999999974 23455568999999999999
Q ss_pred EeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHhhhhh
Q 004776 332 IRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQISQ 386 (731)
Q Consensus 332 Iq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e~la~ 386 (731)
|++.+++.|+|||+-|++..-+ +|. -+++....-+.-.++..|| .|+....
T Consensus 154 i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 154 IRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 553 3455555556667888885 6766543
No 29
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.03 E-value=7.9e-11 Score=127.95 Aligned_cols=60 Identities=28% Similarity=0.454 Sum_probs=57.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
++||||+.++...+..||++|.+|++|+..++.+||.+| +|++..|+|||+|||.|.||.
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeeccccccccC
Confidence 678899999999999999999999999999999999999 999999999999999999984
No 30
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.03 E-value=3.5e-09 Score=107.30 Aligned_cols=189 Identities=25% Similarity=0.337 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEEeeChhHHHHHhcC-----cchhh
Q 004776 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKD-----RPSWY 245 (731)
Q Consensus 172 l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD-----~~~W~ 245 (731)
+-.++++|.+|++.... .+.-|-.... +.| +.+... ..++.+-.-|..|.+..++.++++.|+| +.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd 77 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWD 77 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccc
Confidence 34689999999999977 4477987532 222 222211 1122222368899999999999999998 57899
Q ss_pred hhCCcceEeeeccCCCcchHHHHHHHhhcc---ccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCcccc
Q 004776 246 RDCRSVEVVNVLPTGSSGTIELLYMQLYAP---TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVR 322 (731)
Q Consensus 246 ~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~---SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r 322 (731)
..|-..++|+.+... + .++|. ..+ .++|..|||.++||.++.++|.++|+-.|++. |..|+.+.++|
T Consensus 78 ~~~~~~~~le~id~~---~-~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR 147 (206)
T cd08867 78 KSLKHYEVLEKISED---L-CVGRT--ITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVR 147 (206)
T ss_pred ccccceEEEEEeCCC---e-EEEEE--EccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEE
Confidence 999888888887532 1 22332 233 35799999999999999999999999999874 23456678999
Q ss_pred ccccCCcceEeecC--CCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 004776 323 AEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (731)
Q Consensus 323 ~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr 379 (731)
+...++|++|++.+ ++.|+|||+-|++.-- .+| +-++++.++=+.--|+..||
T Consensus 148 ~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 148 GYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred EEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHH
Confidence 99999999999886 5789999999999863 344 35555555555555666665
No 31
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=99.03 E-value=3.3e-09 Score=108.20 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEEeeChhHHHHHhcCcc---hhhhhC
Q 004776 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDRP---SWYRDC 248 (731)
Q Consensus 173 ~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~~---~W~~~f 248 (731)
..|+++|++|++++-. +.-.|-.- +.+.+ +.+... .+.+.+---|..|+|..++.+|+|.+.|.+ +|-..|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~---k~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVV---KTSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEE---ecCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5789999999999977 55788774 22322 222222 234455677999999999999999998866 455555
Q ss_pred CcceEeeeccCCCcchHHHHHHHhh-ccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccccC
Q 004776 249 RSVEVVNVLPTGSSGTIELLYMQLY-APTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLP 327 (731)
Q Consensus 249 ~~~~~l~~~~~g~~G~lqLm~aE~~-v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlP 327 (731)
-..++|+.+.... .+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++ .|..|+...|+|++..|
T Consensus 79 ~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~----Hp~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVE----YPQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecc----cCCCCCCCCcEEEeeec
Confidence 5556776655321 23332222 345789999999999999999999999999997 34466777999999999
Q ss_pred CcceEeecCCC--ccEEEEEEeeeccCC
Q 004776 328 SGYLIRPCEGG--GSIIHIVDHMDLEPW 353 (731)
Q Consensus 328 SGclIq~~~nG--~skVtwVeH~e~d~~ 353 (731)
+||+|++.+++ +|++||+-++++.-+
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 99999999874 899999999877643
No 32
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.01 E-value=1.7e-10 Score=116.03 Aligned_cols=61 Identities=33% Similarity=0.519 Sum_probs=56.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+..|..|+-.|+..||+.|+..+|+-...|.+||..+ |+.+.||||||||||+|||||...
T Consensus 168 k~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 168 KQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhcc
Confidence 3456679999999999999999999999999999999 999999999999999999997643
No 33
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=98.98 E-value=4.2e-10 Score=117.14 Aligned_cols=68 Identities=35% Similarity=0.631 Sum_probs=61.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH-HHHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ-RKEASRLQA 93 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr-kq~~~~l~~ 93 (731)
..+|.|+.+|+.|++.|...|+..|+|-..-|++|+.+. ||.-+.|+|||||||+|+|| |+...+.++
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAKEKRLKKDAGR~RW 234 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAKEKRLKKDAGRTRW 234 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHHHHhhhhhcchhHH
Confidence 346899999999999999999999999999999999999 99999999999999999998 445555555
No 34
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.87 E-value=3.2e-08 Score=101.00 Aligned_cols=188 Identities=19% Similarity=0.250 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEEeeChhHHHHHhcCc-----chhhh
Q 004776 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDR-----PSWYR 246 (731)
Q Consensus 173 ~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~-----~~W~~ 246 (731)
.+++++|+++++.+-+ .+..|-..... .| +.++-. .....+-.-|.-|+|..++.+|++.|+|. .+|-.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999874 66789874221 12 222211 11222223689999999999999999965 69999
Q ss_pred hCCcceEeeeccCCCcchHHHHHHHhhcccc---ccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccc
Q 004776 247 DCRSVEVVNVLPTGSSGTIELLYMQLYAPTT---LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRA 323 (731)
Q Consensus 247 ~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP---LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 323 (731)
.|-..++|+.+.... . +.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|+. .+..|+.+.|+|+
T Consensus 79 ~~~~~~vle~id~~~-~---i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~----h~~~P~~~~~VR~ 148 (208)
T cd08903 79 NVKDFEVVEAISDDV-S---VCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE----HPLCPPQAGFVRG 148 (208)
T ss_pred ccccEEEEEEecCCE-E---EEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc----CCCCCCCCCeEEE
Confidence 999999998887321 1 1221 34555 79999999999999999999887777765 3345667789999
Q ss_pred cccCCcceEeecC--CCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 004776 324 EMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (731)
Q Consensus 324 ~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr 379 (731)
+..|+|++|.+.+ ++.|+|+|+-|+|.. ..+| +.++++.++=+..-++..||
T Consensus 149 ~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 149 FNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHH
Confidence 9999999999996 458999999888774 3465 34554433334444555554
No 35
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.81 E-value=3e-08 Score=101.28 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHHHHhc-C---cchhhhh
Q 004776 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILK-D---RPSWYRD 247 (731)
Q Consensus 172 l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lm-D---~~~W~~~ 247 (731)
...++++|++|++++.+ .+..|-.....+.| +.++-......+-+-|.-++|..++.+|++.|. | ..+|...
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceeccc
Confidence 46789999999999986 66689874211222 222211111112677888999999999995555 4 3789888
Q ss_pred CCcceEeeeccCCCcchHHHHHHHhhcccc--ccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccc
Q 004776 248 CRSVEVVNVLPTGSSGTIELLYMQLYAPTT--LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (731)
Q Consensus 248 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~r 325 (731)
|-.+++|..+... .-++|. ..+|.| +|..|||..+|+.++.+++. +++..|.+. +..|+...++|++.
T Consensus 82 ~~~~~vl~~id~~----~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~ 151 (209)
T cd08905 82 VKEVKILQRIGKD----TLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAEN 151 (209)
T ss_pred chHHHHHhhcCCC----ceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEe
Confidence 8877777766532 123443 446655 79999999999999886554 566677653 33456678999999
Q ss_pred cCCcceEeecCC--CccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 004776 326 LPSGYLIRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (731)
Q Consensus 326 lPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr 379 (731)
.+.|++|+++++ |.|+|||+-|+|..-+ +| ..|++..++=+.--++..||
T Consensus 152 ~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP---~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 152 GPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEeecCCCC-CC---HHHHHHHhHHhHHHHHHHHH
Confidence 999999999988 9999999999987755 55 35555555545556666665
No 36
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.71 E-value=8.7e-09 Score=105.01 Aligned_cols=63 Identities=24% Similarity=0.427 Sum_probs=58.7
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..++++.|+.|+..|+++||+.|++.+||+...|..|+..+ ++++..|++||||||+||++++
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 34567889999999999999999999999999999999999 9999999999999999999855
No 37
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.69 E-value=5.1e-08 Score=113.47 Aligned_cols=129 Identities=26% Similarity=0.393 Sum_probs=106.1
Q ss_pred ccccceeEEeeChhHHHHHhcCcc----hhhhhCCcceEeeeccCCCcchHHHHHHHhh--ccccccCCceeeEEeeeee
Q 004776 219 VAARACGLVGLDPTRVAEILKDRP----SWYRDCRSVEVVNVLPTGSSGTIELLYMQLY--APTTLAPARDFWLLRYTSV 292 (731)
Q Consensus 219 EASR~~glV~m~~~~LVe~lmD~~----~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~--v~SPLVp~Re~~fLRyckq 292 (731)
-+=|+.|+|...+.+|.|.+|+.+ +|=..|-..++|+.+. |...++|.-++ .+...+-+|||+++||-+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID----~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr 302 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVD----GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR 302 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEec----CCeEEEEEEeccccccCccCcceeEEEEEEEE
Confidence 567889999999999999999766 8888888888888775 23334443332 3446677799999999999
Q ss_pred eCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecC--C--CccEEEEEEeeeccCCCc
Q 004776 293 LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--G--GGSIIHIVDHMDLEPWSV 355 (731)
Q Consensus 293 ~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 355 (731)
.+||+++|+=+|+.. +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+++.-|..
T Consensus 303 ~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 303 NDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999874 4456777999999999999999964 3 379999999999998875
No 38
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.58 E-value=7.8e-07 Score=91.11 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHH-HHhcCc---chhhhh
Q 004776 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVA-EILKDR---PSWYRD 247 (731)
Q Consensus 172 l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LV-e~lmD~---~~W~~~ 247 (731)
....+++||+++.++... +..|--....+.| +.++-......+-+=|.-+.|...+..|. +.|.|. .+|-.-
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 456789999999999764 4579853111223 22221111111233377888888888885 677775 567667
Q ss_pred CCcceEeeeccCCCcchHHHHHHHhhcccc--ccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccc
Q 004776 248 CRSVEVVNVLPTGSSGTIELLYMQLYAPTT--LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (731)
Q Consensus 248 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~r 325 (731)
+...++|..+... --+.| +.-.|.+ .|..|||-.+|+.++.++| ++++..|++.. ..|+...|+|.+.
T Consensus 82 ~~~~~vi~~~~~~----~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~----~~P~~~~~VR~~~ 151 (209)
T cd08906 82 VSACQVLQRVDDN----TLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHS----HKPPLSKYVRGEN 151 (209)
T ss_pred chhhhheeeccCC----cEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecC----CCCCCCCeEEEee
Confidence 7677777766632 12334 4444443 6899999999999998888 57788888742 3456678999999
Q ss_pred cCCcceEeec--CCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH
Q 004776 326 LPSGYLIRPC--EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (731)
Q Consensus 326 lPSGclIq~~--~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr 379 (731)
.++|++|++. .+|.|+|||+-|+|..- .+| +.+++..++=+.--++..||
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 57799999999998765 455 35665555444445555554
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.58 E-value=2.4e-07 Score=93.84 Aligned_cols=168 Identities=27% Similarity=0.399 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhcCCCcceeeCCCCCCCCCcccee--eccCCCccccccceeEEeeChhHHHHHhcC-cchhhhhCCcceE
Q 004776 177 EETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIV--AISHGCTGVAARACGLVGLDPTRVAEILKD-RPSWYRDCRSVEV 253 (731)
Q Consensus 177 ~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~--~~~~~~~~EASR~~glV~m~~~~LVe~lmD-~~~W~~~f~~~~~ 253 (731)
+.+.++||+-+...+.-|..... +.| +.+. ....++...+=|..+.|...+.++++.|+| +.+|-..|-..++
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~-~~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSS-SDH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEec-CCc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 57788999999877899987532 222 2222 222333446678899999989999886665 5678888888888
Q ss_pred eeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeee-eCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcceE
Q 004776 254 VNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLI 332 (731)
Q Consensus 254 l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclI 332 (731)
|+.+... ..+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .|+|++.+++|++|
T Consensus 80 ie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i 149 (197)
T cd08869 80 VETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLI 149 (197)
T ss_pred EEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEE
Confidence 8887642 2345555566766 59999999999885 78889999999986421 1222 89999999999999
Q ss_pred eecCCCccEEEEEEeeeccCCCccccc
Q 004776 333 RPCEGGGSIIHIVDHMDLEPWSVPEVL 359 (731)
Q Consensus 333 q~~~nG~skVtwVeH~e~d~~~vh~l~ 359 (731)
++.++|.|+||++-|+|.-- .+|.-|
T Consensus 150 ~p~~~~~t~vty~~~~Dp~G-~iP~wl 175 (197)
T cd08869 150 EPCGSGKSRVTHICRVDLRG-RSPEWY 175 (197)
T ss_pred EECCCCCeEEEEEEEECCCC-CCCcee
Confidence 99999999999999998642 466433
No 40
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.57 E-value=2.3e-07 Score=94.93 Aligned_cols=128 Identities=30% Similarity=0.403 Sum_probs=96.8
Q ss_pred ccccceeEEeeChhHH-HHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeee-eCCC
Q 004776 219 VAARACGLVGLDPTRV-AEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSV-LEDG 296 (731)
Q Consensus 219 EASR~~glV~m~~~~L-Ve~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G 296 (731)
-+-|...-|.-.+..+ -.++.++.+|-..|-...+|+.+... ..+.|--+.-|-|+ |.|||+.+|+-++ .++|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~----tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQ----TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCC----cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCC
Confidence 4557666676666666 44677899999999888888877632 22233333345565 9999999999765 5799
Q ss_pred eEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccc
Q 004776 297 SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (731)
Q Consensus 297 ~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (731)
..+|+..|++... .|+ ..++|+..+-+|++|+++++|.|+||++-|++..-+ +|.
T Consensus 127 ~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 127 ACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred cEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 9999999998643 233 378999999999999999999999999999987533 553
No 41
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.52 E-value=9.6e-08 Score=105.01 Aligned_cols=62 Identities=29% Similarity=0.598 Sum_probs=57.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+..+|+|+.|++.|+..||+.|+.++||+...|++|+.+. ++.+..|++||+|||+|++|..
T Consensus 174 ~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 174 RGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhcc
Confidence 4556778999999999999999999999999999999999 9999999999999999999854
No 42
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.30 E-value=3.5e-06 Score=85.76 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCc-cceeeccCCCccccccceeEEeeChhHHHHHhcC---cchhhhhC
Q 004776 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDS-IGIVAISHGCTGVAARACGLVGLDPTRVAEILKD---RPSWYRDC 248 (731)
Q Consensus 173 ~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~-~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lmD---~~~W~~~f 248 (731)
..+|.+.-+++++--+.++-.|-.-.. ..+. +-..| +..+.+---|.-|+|.-.+..|++.+-+ +.+|=+.+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~---~~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKK---SKDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEe---CCCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 567888888888876668999977421 1111 11111 2234455668889999999999999999 55999988
Q ss_pred CcceEeeeccCCCcchHHHH-HHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccccC
Q 004776 249 RSVEVVNVLPTGSSGTIELL-YMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLP 327 (731)
Q Consensus 249 ~~~~~l~~~~~g~~G~lqLm-~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlP 327 (731)
-..++|+.|..+ + .++ |.=.-.+-++|.+|||.-+||+++.++|. ..|=||++.- .+|+ .|+|++..|
T Consensus 80 ~~~~Iie~Id~d---t-~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~pp--g~VRgen~p 148 (202)
T cd08902 80 TSMDIIEEFEEN---C-CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EARP--NFVRGFNHP 148 (202)
T ss_pred hheeHhhhhcCC---c-EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCCC--CeEeecccc
Confidence 777666655432 1 111 22223455699999999999999999999 7778887742 1222 899999999
Q ss_pred CcceEeecCCC--ccEEEEEEeeeccCC
Q 004776 328 SGYLIRPCEGG--GSIIHIVDHMDLEPW 353 (731)
Q Consensus 328 SGclIq~~~nG--~skVtwVeH~e~d~~ 353 (731)
+||++.+.+|| .|+.||+-++|+.-+
T Consensus 149 ~g~i~~Pl~~~p~k~~~t~~lq~DLkG~ 176 (202)
T cd08902 149 CGWFCVPLKDNPSHSLLTGYIQTDLRGM 176 (202)
T ss_pred cEEEEEECCCCCCceEEEEEEEecCCCC
Confidence 99999999998 677889999877744
No 43
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.26 E-value=3.5e-07 Score=95.82 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=58.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+||||+.+...+.+.||.+|..+|.|+..++..+|.+| .|.+..|+|||+|.|.|.||.+
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 4567899999999999999999999999999999999999 9999999999999999999854
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.17 E-value=1.5e-06 Score=90.72 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 30 YTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 30 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
|-..-+..|..+|..++||++.++.+||+.. ||+..||-.||+|||.|+|-
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhhh
Confidence 4555678999999999999999999999999 99999999999999999883
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.11 E-value=1.5e-05 Score=81.63 Aligned_cols=167 Identities=23% Similarity=0.357 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec--cCCCccccccceeEEeeChhHHHHH-hcCcchhhhhCCcc
Q 004776 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI--SHGCTGVAARACGLVGLDPTRVAEI-LKDRPSWYRDCRSV 251 (731)
Q Consensus 175 lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~--~~~~~~EASR~~glV~m~~~~LVe~-lmD~~~W~~~f~~~ 251 (731)
.-++.+++|++.|..--=-|+.... .+...+..+ +.|..--.-|....+.-.+.+++.. +-|+.+|-..|-..
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 3467778888877643444555311 111211111 1222224557777777777777744 44577899999998
Q ss_pred eEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeee-eeCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcc
Q 004776 252 EVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTS-VLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (731)
Q Consensus 252 ~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 330 (731)
++|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++... .| . .++|.+.+-+|+
T Consensus 86 ~vIe~ld~~~----~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~----~P-~-~~VR~~~~~~~w 154 (204)
T cd08908 86 KVIEILDSQT----EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR----AP-V-AGVRVNVLLSRY 154 (204)
T ss_pred EeeEecCCCc----eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc----CC-c-CceEEEEEeeEE
Confidence 9998887432 245666677888 7999999997765 589999999999998532 22 2 368999999999
Q ss_pred eEeecCCCccEEEEEEeeeccCCCccc
Q 004776 331 LIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (731)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (731)
+|++.++|.|+||.+-|+|--- .+|.
T Consensus 155 ~i~P~g~g~t~vtyi~~~DPgG-~iP~ 180 (204)
T cd08908 155 LIEPCGSGKSKLTYMCRIDLRG-HMPE 180 (204)
T ss_pred EEEECCCCcEEEEEEEEeCCCC-CCcH
Confidence 9999999999999999997532 3553
No 46
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.07 E-value=1.9e-05 Score=80.98 Aligned_cols=126 Identities=23% Similarity=0.336 Sum_probs=92.7
Q ss_pred cceeEEeeChhHHHHHhcCc---chhhhhCCcceEeeeccCCCcchHHHHHHHhhccccc-cCCceeeEEeeeeeeCCCe
Q 004776 222 RACGLVGLDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTL-APARDFWLLRYTSVLEDGS 297 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPL-Vp~Re~~fLRyckq~~~G~ 297 (731)
|.-+.|...+.+|.+.|.|. .+|-.++.+.++|+.+... ..++|..+..|=|+ ++.|||..+|-....+++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d----~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTED----ICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCC----eEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 34567888999999999885 5788899999998876642 12344333333333 3999999999555555554
Q ss_pred EEEEEeecCCCCCCCCCCCCC-ccccccccCCcceEeec---CCCccEEEEEEeeeccCCCcc
Q 004776 298 LVVCERSLNNTQNGPSMPQAP-HFVRAEMLPSGYLIRPC---EGGGSIIHIVDHMDLEPWSVP 356 (731)
Q Consensus 298 waVvDvSld~~~~~~~~~~~~-~~~r~~rlPSGclIq~~---~nG~skVtwVeH~e~d~~~vh 356 (731)
. |.=.|++. +..|+.. .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..||
T Consensus 124 v-i~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 124 V-VACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred E-EEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 4 66677764 3344454 79999999999999999 999999999999997644566
No 47
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.85 E-value=4.3e-05 Score=78.15 Aligned_cols=150 Identities=16% Similarity=0.248 Sum_probs=108.3
Q ss_pred cccccceeEEe-eChhHHHHHhcCc---chhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeee-e
Q 004776 218 GVAARACGLVG-LDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTS-V 292 (731)
Q Consensus 218 ~EASR~~glV~-m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyck-q 292 (731)
.-.=|+.+.+. ..+..|.++|+|. .+|...+-. ++...+.+ ..++|..+..|-| +..|||.++|-.. .
T Consensus 48 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~----~~i~y~~~k~PwP-vs~RD~V~~r~~~~~ 120 (207)
T cd08910 48 LYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG----ETVIYWEVKYPFP-LSNRDYVYIRQRRDL 120 (207)
T ss_pred cEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC----CEEEEEEEEcCCC-CCCceEEEEEEeccc
Confidence 34678888887 7999999999995 567776543 44433332 2356778888999 9999999996443 3
Q ss_pred eCCC--eEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHH
Q 004776 293 LEDG--SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIA 370 (731)
Q Consensus 293 ~~~G--~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afg 370 (731)
..+| .|+|+..|.+. |..|....++|....-+|++|++..++.|+|+++-|.+-. ..+|. -+++.-...+
T Consensus 121 ~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~~~ 192 (207)
T cd08910 121 DVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAKNG 192 (207)
T ss_pred cCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHHHh
Confidence 3344 68888888763 3345556899999999999999998899999999999853 24652 2455555556
Q ss_pred HHHHHHHHH-HHh
Q 004776 371 QKTTMAALR-HLR 382 (731)
Q Consensus 371 ar~w~~aLr-~~e 382 (731)
.-.++..|| .|.
T Consensus 193 ~~~~l~~l~ka~~ 205 (207)
T cd08910 193 VPNFLKDMQKACQ 205 (207)
T ss_pred hHHHHHHHHHHHh
Confidence 667777776 554
No 48
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.84 E-value=0.00016 Score=73.91 Aligned_cols=167 Identities=23% Similarity=0.359 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEe-eChhHHHHHhcCcchhhhhCCcceE
Q 004776 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVG-LDPTRVAEILKDRPSWYRDCRSVEV 253 (731)
Q Consensus 175 lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~-m~~~~LVe~lmD~~~W~~~f~~~~~ 253 (731)
.-++.+++|++.++...=-|+...+ +.+-+.. ....+.+..---=|.+.-|. ..+.-|-++|.|+..|=+.+-...+
T Consensus 10 ~l~~~~~~~lre~~ek~kgW~~~~~-~~~vev~-~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~~ 87 (205)
T cd08907 10 YLEDNVQCLLREASERFKGWHSAPG-PDNTELA-CKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQV 87 (205)
T ss_pred HHHHHHHHHHHHhhhccCCceeecC-CCCcEEE-EEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhhh
Confidence 3468899999999877778888532 1122211 00011111111112222222 3455678999999999998865555
Q ss_pred eeeccCCCcchHHHHHHHhhcc--ccccCCceeeEEeeee-eeCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcc
Q 004776 254 VNVLPTGSSGTIELLYMQLYAP--TTLAPARDFWLLRYTS-VLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (731)
Q Consensus 254 l~~~~~g~~G~lqLm~aE~~v~--SPLVp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 330 (731)
|+.+.-.. -..| |+. .+.+|.|||.+||.-+ .+..|.-+|+.+|++... .++... +|+--+=|||
T Consensus 88 Ie~Ld~n~-dI~y------Y~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~sgY 155 (205)
T cd08907 88 IEALENNT-EVYH------YVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTSQY 155 (205)
T ss_pred heeecCCC-EEEE------EEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEeccE
Confidence 55554221 1000 222 2568999999999865 467889999999998643 333334 8999999999
Q ss_pred eEeecCCCccEEEEEEeeeccCCCcc
Q 004776 331 LIRPCEGGGSIIHIVDHMDLEPWSVP 356 (731)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh 356 (731)
||++++.|.|+||-+-|++..-+ .|
T Consensus 156 lIep~g~g~s~ltyi~rvD~rG~-~P 180 (205)
T cd08907 156 LIEPCGMGRSRLTHICRADLRGR-SP 180 (205)
T ss_pred EEEECCCCCeEEEEEEEeCCCCC-Cc
Confidence 99999999999999999987543 44
No 49
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.74 E-value=0.00029 Score=73.65 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhc--CCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEe-eChhHHHHHhcCcc---hhhhhC
Q 004776 175 IAEETLTEFLSKAT--GTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVG-LDPTRVAEILKDRP---SWYRDC 248 (731)
Q Consensus 175 lA~~am~Ell~la~--~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~-m~~~~LVe~lmD~~---~W~~~f 248 (731)
.-++-.+|.+++|. .++..|--... +.|-.++....-..|.....=|+.++|. ..+..+.+.|.|.+ +|-..|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~ 85 (235)
T cd08872 7 EVDEKVQEQLTYALEDVGADGWQLFAE-EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTL 85 (235)
T ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEe-CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhh
Confidence 34677889999997 34667876421 1121111110000112223568888888 88899999999975 566677
Q ss_pred CcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCC-------CeEEEEEeecCCCCCCCCCCCCCccc
Q 004776 249 RSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLED-------GSLVVCERSLNNTQNGPSMPQAPHFV 321 (731)
Q Consensus 249 ~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~-------G~waVvDvSld~~~~~~~~~~~~~~~ 321 (731)
-..++|+.++.+. .+.|..+-.|=| +..|||.++|+-++.++ +.|+||..|++. +..|+...|+
T Consensus 86 ~~~~vie~l~~~~----~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g~V 156 (235)
T cd08872 86 ENFHVVETLSQDT----LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNKCV 156 (235)
T ss_pred heeEEEEecCCCC----EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCCeE
Confidence 7778888776432 245666667888 69999999999998876 789999999874 3345556888
Q ss_pred cccc---cCCcceEee------c--CCCccEEEEEEeeeccCC
Q 004776 322 RAEM---LPSGYLIRP------C--EGGGSIIHIVDHMDLEPW 353 (731)
Q Consensus 322 r~~r---lPSGclIq~------~--~nG~skVtwVeH~e~d~~ 353 (731)
|++. +=.|.+|.+ + .||.|+||++-|++---+
T Consensus 157 Rv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~ 199 (235)
T cd08872 157 RAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW 199 (235)
T ss_pred EEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC
Confidence 8875 223333333 1 588999999999975544
No 50
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.69 E-value=0.0007 Score=69.17 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcCC--CcceeeCCCCCCCCCc-cceeec-cCCCccccccceeEE-eeChhHHHHHhcCc---chhhhhCC
Q 004776 178 ETLTEFLSKATGT--AVEWVQMPGMKPGPDS-IGIVAI-SHGCTGVAARACGLV-GLDPTRVAEILKDR---PSWYRDCR 249 (731)
Q Consensus 178 ~am~Ell~la~~~--eplWi~~~g~~~g~~~-~~~~~~-~~~~~~EASR~~glV-~m~~~~LVe~lmD~---~~W~~~f~ 249 (731)
+=++||+...+.. ...|-.... +.|+.. +.+.-. ..+...-.=|..+++ .+.+..|.+.|+|. .+|-..|-
T Consensus 6 ~d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~ 84 (209)
T cd08870 6 EDLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVI 84 (209)
T ss_pred HHHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhee
Confidence 3455666665533 257988643 234222 322211 122333457888888 57999999999994 57888888
Q ss_pred cceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCc
Q 004776 250 SVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG 329 (731)
Q Consensus 250 ~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSG 329 (731)
..++|+.... .| ..++|-.+..|-|+ -.||+-+.|-..+..+|..+|+=.|++. +..|.. .++|.+.+=||
T Consensus 85 ~~~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~ 155 (209)
T cd08870 85 EHETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESS 155 (209)
T ss_pred eEEEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeE
Confidence 8888876442 12 34678888899887 9999999987777779999888888774 233444 78999999999
Q ss_pred ceEeec--CCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHh
Q 004776 330 YLIRPC--EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (731)
Q Consensus 330 clIq~~--~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e 382 (731)
++|++. .+|.++++++-|.+- ...+| .-|++.....|...++..|| .|+
T Consensus 156 ~~i~p~~~~~~~t~~~~~~~~dp-~G~IP---~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 156 LVIRAVKGDGQGSACEVTYFHNP-DGGIP---RELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEecCCCCceEEEEEEEECC-CCCCC---HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999 789999999999973 23466 35666667778888888886 564
No 51
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.63 E-value=3e-05 Score=80.66 Aligned_cols=58 Identities=29% Similarity=0.578 Sum_probs=54.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
.+|||..|++.-.++|..+|.. +|||+...+++||+++ |++..||-.||.|+|-+.||
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 3688899999999999999976 4999999999999999 99999999999999999887
No 52
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.59 E-value=0.00041 Score=69.22 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=98.8
Q ss_pred ccccceeEEeeChhHHHHHhcCcchhhh---hCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeee-C
Q 004776 219 VAARACGLVGLDPTRVAEILKDRPSWYR---DCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL-E 294 (731)
Q Consensus 219 EASR~~glV~m~~~~LVe~lmD~~~W~~---~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~-~ 294 (731)
-.-|.+++|..++.++.+++.|.+.|.+ .|...++|+-+..+. .++|..+..|=| |..|||.+.|..... +
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~----~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNE----RSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCc----EEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 4558899999999999999999766554 455556666543321 234444444444 789999987654433 3
Q ss_pred CCeEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHH
Q 004776 295 DGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTT 374 (731)
Q Consensus 295 ~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w 374 (731)
+|..+|.=.|.+.. .|....|+|.+.+.+|+.|++.++|.|+||++-|++..-+...-+.+.+... +...+
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~----~~~~~ 186 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKD----APYNT 186 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHH----HHHHH
Confidence 67777766666532 1233478899999999999999999999999999998754333333433322 34456
Q ss_pred HHHHH
Q 004776 375 MAALR 379 (731)
Q Consensus 375 ~~aLr 379 (731)
+.+|+
T Consensus 187 l~~l~ 191 (195)
T cd08876 187 LENLR 191 (195)
T ss_pred HHHHH
Confidence 66664
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.57 E-value=5.2e-05 Score=58.33 Aligned_cols=34 Identities=35% Similarity=0.644 Sum_probs=28.8
Q ss_pred cCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhH
Q 004776 44 ECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (731)
Q Consensus 44 ~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK 81 (731)
.+|||+..++.+|+++. |++.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 46999999999999999 99999999999999865
No 54
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.54 E-value=0.00019 Score=75.13 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=91.9
Q ss_pred cccceeEEeeChhHHHHHhcCcc---hhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeee-CC
Q 004776 220 AARACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL-ED 295 (731)
Q Consensus 220 ASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~-~~ 295 (731)
+=|.-+.|...+.+|++.|.|.+ +|-..+...++|+-+... .+ ++|..+..|. -+..|||.++|+.++. ++
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~---iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DG---IYHTTMPSLT-SEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cE---EEEEEcCCCC-CCCCceEEEEEEEEeccCC
Confidence 34555668889999999999965 677777778888876632 12 3443333333 4889999999999984 44
Q ss_pred -CeEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeee
Q 004776 296 -GSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMD 349 (731)
Q Consensus 296 -G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e 349 (731)
+..+|.=.|+.. +..|+.+.|+|++.+=.|++|++.++|.|+||.+-|++
T Consensus 153 ~~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 153 GDPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 348787777652 23456678999999999999999999999999999986
No 55
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.41 E-value=0.0017 Score=66.36 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEEeeChhHHHHHhcCcchhh---hhC
Q 004776 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDRPSWY---RDC 248 (731)
Q Consensus 173 ~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~~~W~---~~f 248 (731)
++-+...|.|+++..+. +.-|..... +.| +.++-. ..+....+-|.-|++..+...+.++|.|.+... ..|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~-~~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKE-SEG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEecc-CCC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 34445778888887665 557988532 122 222211 112224677889999999999999999986544 444
Q ss_pred CcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEE-eeeeee-CCCeEEEEEeecCCCCC-----CCCCCCCC-cc
Q 004776 249 RSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLL-RYTSVL-EDGSLVVCERSLNNTQN-----GPSMPQAP-HF 320 (731)
Q Consensus 249 ~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fL-Ryckq~-~~G~waVvDvSld~~~~-----~~~~~~~~-~~ 320 (731)
-..++|..+.-. -++.|..+-.|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|+.+ .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 444566554422 1345555556666 888999985 556667 99999999999985321 11134445 78
Q ss_pred ccccccCCcceEeecCCCccEEEEEEeeeccCCCccc
Q 004776 321 VRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (731)
Q Consensus 321 ~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (731)
+|.+...+|++|+++++|.|+|+++-|++-.-+-||.
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~ 190 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK 190 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH
Confidence 9999999999999999999999999997633222764
No 56
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.26 E-value=0.0021 Score=67.59 Aligned_cols=124 Identities=22% Similarity=0.368 Sum_probs=93.1
Q ss_pred cceeEEeeChhHHHHHhcCcc---hhhhhCCcceEeeeccCCCcchHHHHHHHhhccc-c---ccCCceeeEEeeeeee-
Q 004776 222 RACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPT-T---LAPARDFWLLRYTSVL- 293 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~S-P---LVp~Re~~fLRyckq~- 293 (731)
|.-+.|...+..|.+.|.|.+ +|-..|-..++|+.+.... . + .|+.+ | -+..|||-.++...+.
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~----v---Y~v~~~p~~~pvs~RDfV~~~s~~~~~ 155 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-A----I---YHVTSPSLSGHGKPQDFVILASRRKPC 155 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-E----E---EEEecCCCCCCCCCCeEEEEEEEEecc
Confidence 555789999999999999965 6777777888888877421 1 1 22322 2 5889999999888664
Q ss_pred CCC-eEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccc
Q 004776 294 EDG-SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVL 359 (731)
Q Consensus 294 ~~G-~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~ 359 (731)
++| .++|+=.|+.. |..|+...|+|.+.+..|++|++.++|.|+||++-|++ +..+|...
T Consensus 156 ~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~~ 216 (240)
T cd08913 156 DNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYIS 216 (240)
T ss_pred CCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHHH
Confidence 344 56677766653 33566778999999999999999999999999999998 33566433
No 57
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.16 E-value=0.00046 Score=70.44 Aligned_cols=62 Identities=34% Similarity=0.627 Sum_probs=57.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
..++.++.++..|+..++..|...++|+...+.+|+..+ |+.++.+++||||+|++.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 152 KPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 456778899999999999999999999999999999999 99999999999999999998543
No 58
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.11 E-value=0.0022 Score=67.24 Aligned_cols=131 Identities=20% Similarity=0.321 Sum_probs=98.5
Q ss_pred cccceeEEeeChhHHHHHhcCcc---hhhhhCCcceEeeeccCCCcchHHHHHHHhhccc-cccCCceeeEEeeeeeeC-
Q 004776 220 AARACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPT-TLAPARDFWLLRYTSVLE- 294 (731)
Q Consensus 220 ASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~S-PLVp~Re~~fLRyckq~~- 294 (731)
+=|.-..|...+..|.+.|.|.+ +|...|...++|+-++.... +|...-.|- | +..|||-++|=-.+..
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~P-vk~RD~V~~~s~~~~~~ 152 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNN-DKPKDLVVLVSRRKPLK 152 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCC-CCCceEEEEEEEEecCC
Confidence 45666688899999999999965 67778888889888774322 344332332 3 4899999987766655
Q ss_pred CCe-EEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhh
Q 004776 295 DGS-LVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPL 362 (731)
Q Consensus 295 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl 362 (731)
+|. ++|.=.|+.. +..|+.+.|+|.+.+=+|++|++.++|.|+||.+-|++ +..+|..--++
T Consensus 153 dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 153 DGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 885 8888888863 34566778999999899999999999999999999995 45565444333
No 59
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.09 E-value=0.00078 Score=76.83 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=53.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~K 83 (731)
..+|.|..||..|...|..+|+++++|+....+.|+.+| ||....|..||-|-|.|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 446779999999999999999999999999999999999 9999999999999887753
No 60
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.05 E-value=0.0012 Score=67.58 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=105.3
Q ss_pred ccccceeEE-eeChhHHHHHhcCcc---hhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeee-
Q 004776 219 VAARACGLV-GLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL- 293 (731)
Q Consensus 219 EASR~~glV-~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~- 293 (731)
..=|+.+++ ...+..+++.|+|.+ +|...+-..++|+....- + .+++|..+..|-|+ ..||+.+.|-..+.
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 120 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--G-SEIIYWEMQWPKPF-ANRDYVYVRRYIIDE 120 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--C-CEEEEEEEECCCCC-CCccEEEEEEEEEcC
Confidence 356776655 789999999999964 688888878888764321 2 24577788889886 99999998876665
Q ss_pred CCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecC---CCccEEEEEEeeeccCC-CccccchhhhhhhHHH
Q 004776 294 EDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE---GGGSIIHIVDHMDLEPW-SVPEVLRPLYESSTLI 369 (731)
Q Consensus 294 ~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~---nG~skVtwVeH~e~d~~-~vh~l~rpl~~Sg~af 369 (731)
++|.++|+-.|++. +..|....++|.....+|++|++.. +++++|+++-|. |+. .+|.- +++.-..-
T Consensus 121 ~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~~~~~ 191 (207)
T cd08911 121 ENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSWVAMS 191 (207)
T ss_pred CCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHHHHHh
Confidence 45778898888873 2344556899999999999999984 678999988885 655 47632 23333333
Q ss_pred HHHHHHHHHH
Q 004776 370 AQKTTMAALR 379 (731)
Q Consensus 370 gar~w~~aLr 379 (731)
+.-.|+.-|+
T Consensus 192 ~~~~~l~~l~ 201 (207)
T cd08911 192 GMPDFLERLR 201 (207)
T ss_pred hccHHHHHHH
Confidence 4444555553
No 61
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.69 E-value=0.011 Score=73.21 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=56.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
.+++|++++..|+..+...|.+..+|.....+-|...+ +++++.|++||||-|.|.|+..++
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n 964 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLN 964 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhc
Confidence 36778999999999999999999999999999999999 999999999999999999986653
No 62
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.64 E-value=1.2 Score=45.91 Aligned_cols=66 Identities=21% Similarity=0.445 Sum_probs=45.1
Q ss_pred HHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh-
Q 004776 411 SRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE- 489 (731)
Q Consensus 411 ~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd- 489 (731)
...|..-+ ...++|..... .++|+|..++.. + +.+...++...++.+||+.+|++|.|
T Consensus 12 ~~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~----~-------------~~~~~~k~~~~~~~~s~e~~~~~l~D~ 70 (222)
T cd08871 12 FEEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPE----N-------------SSIKMIKVSAIFPDVPAETLYDVLHDP 70 (222)
T ss_pred HHHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCC----C-------------CceEEEEEEEEeCCCCHHHHHHHHHCh
Confidence 34455333 33568997642 467999887753 1 23444555566657999999999998
Q ss_pred -hchhhhhc
Q 004776 490 -HRSEWADS 497 (731)
Q Consensus 490 -~R~eWd~l 497 (731)
.|.+||..
T Consensus 71 ~~r~~Wd~~ 79 (222)
T cd08871 71 EYRKTWDSN 79 (222)
T ss_pred hhhhhhhhh
Confidence 89999974
No 63
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=94.81 E-value=1.4 Score=45.48 Aligned_cols=174 Identities=16% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhccc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSI 499 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l~~ 499 (731)
..++|.... ..+++.|..+++.+ .. |-+ .++..-+ |.+|+.||+||.+ +|.+||-...
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~--~~-------------gkl--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~ 79 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRK--YH-------------GNL--YRVEGII-PESPAKLIQFMYQPEHRIKWDKSLQ 79 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCC--CC-------------ceE--EEEEEEe-cCCHHHHHHHHhccchhhhhccccc
Confidence 348998873 34889999988752 11 212 2445566 8999999999997 9999996311
Q ss_pred chhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCCce
Q 004776 500 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 579 (731)
Q Consensus 500 ~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~s 579 (731)
..+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.-..| | +.
T Consensus 80 -----------------------~~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~----~-~~ 124 (204)
T cd08904 80 -----------------------VYKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE----G-NM 124 (204)
T ss_pred -----------------------ceeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC----C-CE
Confidence 13444444 555567766653311 1125568888888632223 1 12
Q ss_pred EEE-EeeccCC----CCCCC--CccCCccEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCceEEEe
Q 004776 580 ELV-FAPIDAS----FSDDA--PIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIA 652 (731)
Q Consensus 580 ~vV-yAPvD~~----d~~~v--~LLPSGF~IlP~~~~~dg~~~~~tldlas~l~~g~~~~~~~~~~~~~~~~~gSlLTva 652 (731)
+++ +.-|+-+ .+.+| -..|+||.|.|+. + ..++|.||.-
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~--------------------~--------------~p~~t~l~~~ 170 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLP--------------------E--------------NPAYSKLVMF 170 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECC--------------------C--------------CCCceEEEEE
Confidence 333 3334332 24444 3789999999941 0 1246888988
Q ss_pred ehhhccc-cchhhHHhHHHHHHHHHHHHHHHHHHHc
Q 004776 653 FQFAFEM-HLQENVASMARQYVRGIIASVQRVALAL 687 (731)
Q Consensus 653 FQ~l~~~-~~~~sV~~~~~~~v~~v~~tVqri~~AL 687 (731)
+|+=.+. .|..-|..+..+ ++++.....+.||
T Consensus 171 ~~~DlkG~lP~~vv~~~~~~---~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRSVIEKTMPT---NLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHHHHHHHhHH---HHHHHHHHHHHhc
Confidence 8865554 344433332222 3444555555554
No 64
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=94.73 E-value=0.13 Score=48.50 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=55.7
Q ss_pred CCcccCCHHHHH-HHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 004776 25 GKYVRYTPEQVE-ALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNK 103 (731)
Q Consensus 25 rkR~r~T~~Ql~-~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~ 103 (731)
++|.+||.++.. .+...+. +. ....++|+++ |+++.++..|.+. .+....................
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~-~g----~sv~evA~e~----gIs~~tl~~W~r~----y~~~~~~~~~~~~~~~~~~~~~ 74 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFE-PG----MTVSLVARQH----GVAASQLFLWRKQ----YQEGSLTAVAAGEQVVPASELA 74 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHc-CC----CCHHHHHHHH----CcCHHHHHHHHHH----HhhcccccccccccCCchhHHH
Confidence 445678887654 4444443 22 2456789999 9999999999542 2211100000000000111223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 104 LLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 104 ~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.+.+++.+|.+++.+|+.||+.||.-..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999999987653
No 65
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.50 E-value=0.022 Score=62.52 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=49.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..|++..+......+|+.+..+ .|||+...+..|++++ ||+..||..||-|.|-|..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 3455668999999999988555 4899999999999999 99999999999999987665
No 66
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.50 E-value=0.038 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=31.4
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhh
Q 004776 34 QVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (731)
Q Consensus 34 Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRR 79 (731)
-++.|++.|..++++.......|..+. +|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 357799999999999999999999999 999999999997554
No 67
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.19 E-value=3.8 Score=41.71 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=42.9
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhhhc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd~R~eWd~l 497 (731)
..++|..... .++|+|.+++..+ + ..+.--++.+-+ +.+|+.||+.|.|.|.+||..
T Consensus 17 ~~~~W~~~~~--~~gi~I~~k~~~~----~------------~~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSVSS--SDHVELAFKKVDD----G------------HPLRLWRASTEV-EAPPEEVLQRILRERHLWDDD 73 (197)
T ss_pred ccCCceEEec--CCcEEEEEEeCCC----C------------CcEEEEEEEEEe-CCCHHHHHHHHHHHHhccchh
Confidence 4689986642 5689999988641 1 124445777888 799999999999999999964
No 68
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.74 E-value=3.3 Score=42.38 Aligned_cols=66 Identities=20% Similarity=0.363 Sum_probs=52.0
Q ss_pred HHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh
Q 004776 410 LSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE 489 (731)
Q Consensus 410 M~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd 489 (731)
++..|...+.. .++|..... .++|+|..|... .+.+++-++-..+ +.|+..++++|+|
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~~--~~~i~v~~r~~~-----------------~~~~~~~k~e~~i-~~~~~~~~~vl~d 67 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQKE--SEGIRVYYKFEP-----------------DGSLLSLRMEGEI-DGPLFNLLALLNE 67 (215)
T ss_pred HHHHHHhcccC--CCCcEEecc--CCCeEEEEEeCC-----------------CCCEEEEEEEEEe-cCChhHeEEEEeh
Confidence 44556666655 778997742 478999998864 2348999999999 7999999999998
Q ss_pred --hchhhhhc
Q 004776 490 --HRSEWADS 497 (731)
Q Consensus 490 --~R~eWd~l 497 (731)
.+.+|+-.
T Consensus 68 ~~~~~~W~p~ 77 (215)
T cd08877 68 VELYKTWVPF 77 (215)
T ss_pred hhhHhhhccc
Confidence 89999975
No 69
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=93.44 E-value=0.53 Score=48.54 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
-..++| .+.. ..++|+|.++... + . .. .+++. +-+ ++||+.|+++|.| .|.+||..
T Consensus 19 ~~~~gW-~l~~-~~~gI~Vy~k~~~----~-~---------~~-~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGW-SYQC-LEKDVVIYYKVFN----G-T---------YH-GFLGA---GVI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCc-EEEe-cCCCEEEEEecCC----C-C---------cc-eEEEE---EEE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 467799 4433 3578999987642 1 1 12 35543 345 8999999999998 89999963
No 70
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=93.36 E-value=9.6 Score=39.63 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=42.6
Q ss_pred CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhhhc
Q 004776 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (731)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd~R~eWd~l 497 (731)
-...+|..... .++|.|.++|..+ + .|--.+.| |+=++.+|.+.|+|.|+| |..||.-
T Consensus 24 ek~kgW~~~~~--~~~vev~~kk~~d---~----------~~l~lwk~---s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAPG--PDNTELACKKVGD---G----------HPLRLWKV---STEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeecC--CCCcEEEEEeCCC---C----------CceEEEEE---EEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 56679987743 5789999998752 2 12234444 456678999999999999 9999964
No 71
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.32 E-value=9.7 Score=37.89 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=43.7
Q ss_pred ccC-CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhh
Q 004776 418 LNG-FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEW 494 (731)
Q Consensus 418 v~~-s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eW 494 (731)
.++ +++-+|..... .++|+|..++..+ +.+..-+++..+ +.||+.+++++.| +|.+|
T Consensus 10 ~~~~~~~~~W~~~~~--~~~v~v~~~~~~~-----------------~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w 69 (195)
T cd08876 10 GAALAPDGDWQLVKD--KDGIKVYTRDVEG-----------------SPLKEFKAVAEV-DASIEAFLALLRDTESYPQW 69 (195)
T ss_pred ccccCCCCCCEEEec--CCCeEEEEEECCC-----------------CCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHH
Confidence 344 44555987753 4789999887531 224455667778 7999999999998 89999
Q ss_pred hhc
Q 004776 495 ADS 497 (731)
Q Consensus 495 d~l 497 (731)
|..
T Consensus 70 ~~~ 72 (195)
T cd08876 70 MPN 72 (195)
T ss_pred Hhh
Confidence 964
No 72
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=92.09 E-value=10 Score=36.83 Aligned_cols=127 Identities=21% Similarity=0.287 Sum_probs=74.6
Q ss_pred CCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhcccch
Q 004776 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSIDA 501 (731)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l~~~~ 501 (731)
++|..+... ++|+|..++..+ +.+...++..-+ +.|+..|+++|.| .|.+||....
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~-----------------~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~-- 72 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYED-----------------SGLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFE-- 72 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCC-----------------CCceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcce--
Confidence 589987533 478888776531 123344556677 6899999999996 8999995311
Q ss_pred hhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCCceEE
Q 004776 502 YSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAEL 581 (731)
Q Consensus 502 ~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~s~v 581 (731)
...++..+.. +..|--.+....-+ +-.|+++++..+ ..++ .| .-++
T Consensus 73 ---------------------~~~vl~~~~~----~~~i~~~~~~~p~p-----~~~Rdfv~~~~~-~~~~--~~-~~~~ 118 (193)
T cd00177 73 ---------------------EFEVIEEIDE----HTDIIYYKTKPPWP-----VSPRDFVYLRRR-RKLD--DG-TYVI 118 (193)
T ss_pred ---------------------EEEEEEEeCC----CeEEEEEEeeCCCc-----cCCccEEEEEEE-EEcC--CC-eEEE
Confidence 1233333322 22333333333211 557899999875 3443 23 3467
Q ss_pred EEeeccCCC-C---CC--CCccCCccEEecC
Q 004776 582 VFAPIDASF-S---DD--APIIPSGFRIIPL 606 (731)
Q Consensus 582 VyAPvD~~d-~---~~--v~LLPSGF~IlP~ 606 (731)
+...||... | +. ..++++||.|-|+
T Consensus 119 ~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~ 149 (193)
T cd00177 119 VSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL 149 (193)
T ss_pred EEeecCCCCCCCCCCcEEEEEEccEEEEEEC
Confidence 777777641 1 22 2255777777773
No 73
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=91.68 E-value=1 Score=47.22 Aligned_cols=57 Identities=30% Similarity=0.263 Sum_probs=31.4
Q ss_pred hhhhhhHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 75 FQNRRCREKQRK-----EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 75 FQNRRaK~Krkq-----~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
-||-|-|.|.+- +-..+..+|.+|..+|+.|++.++.|-.+-++|+.+...++++|.
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 355565555432 223455556666666666666666665555555555555555543
No 74
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=91.29 E-value=5.3 Score=38.56 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=27.8
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHH
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCRE 82 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~ 82 (731)
.+||.+++..+- -.+|=++| -|++...|--|=|.||+-.
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~L---rG~~reEVvrlKQrRRTLK 60 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHL---RGLSREEVVRLKQRRRTLK 60 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHh---cCCCHHHHHHHHHHHHHHh
Confidence 688888877652 23344444 3999999999999888753
No 75
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=91.01 E-value=0.25 Score=51.04 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=79.7
Q ss_pred chhhhhCC--cceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEee-eeeeCC-CeEEEEEeecCCCCCCCCCC-C
Q 004776 242 PSWYRDCR--SVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRY-TSVLED-GSLVVCERSLNNTQNGPSMP-Q 316 (731)
Q Consensus 242 ~~W~~~f~--~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRy-ckq~~~-G~waVvDvSld~~~~~~~~~-~ 316 (731)
.+|...+- .+++++....+.++..++.|.+..+|-| +..|||..+.. +...+. ..++|+..+++.. ..| .
T Consensus 66 ~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~~ 140 (208)
T cd08864 66 KEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVESL 140 (208)
T ss_pred hhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCcc
Confidence 47877777 6888888776555545666777788888 89999999999 666552 6778999998743 122 3
Q ss_pred CCccccccccCCcceEeecCC---CccEEEEEEeeeccCC-Ccc
Q 004776 317 APHFVRAEMLPSGYLIRPCEG---GGSIIHIVDHMDLEPW-SVP 356 (731)
Q Consensus 317 ~~~~~r~~rlPSGclIq~~~n---G~skVtwVeH~e~d~~-~vh 356 (731)
...++|.+ -=||..|+..|. +-..|+|.==...|+. .||
T Consensus 141 ~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP 183 (208)
T cd08864 141 YENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIP 183 (208)
T ss_pred CCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCc
Confidence 34788888 679999998875 4789999983344555 366
No 76
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.17 E-value=1.4 Score=36.91 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 123 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~en 123 (731)
++|.|++.....++.....|..+|..|+.++..|..+...|..+|
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566667777777777777777777777777666666666665554
No 77
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=88.53 E-value=11 Score=38.27 Aligned_cols=130 Identities=18% Similarity=0.292 Sum_probs=72.4
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHh-h--hchhhhhcc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLR-E--HRSEWADSS 498 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLR-d--~R~eWd~l~ 498 (731)
...+|.... +..++|.|.+|... + .|-+ .++...+ ++||+.||++|- | .|.+||...
T Consensus 22 ~~~~W~l~~-~~~~~i~i~~r~~~----~------------~~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~ 81 (208)
T cd08868 22 TDPGWKLEK-NTTWGDVVYSRNVP----G------------VGKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPTV 81 (208)
T ss_pred cCCCceEEE-ecCCCCEEEEEEcC----C------------CceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCcc
Confidence 345998764 33348899988853 1 1323 4445667 899999998765 4 899999652
Q ss_pred cchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCCc
Q 004776 499 IDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNC 578 (731)
Q Consensus 499 ~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~ 578 (731)
. ..+++-.+ +....|--....... ..-+-+||.+.++-.. -++ + .
T Consensus 82 ~-----------------------~~~~i~~~----d~~~~i~y~~~~~~~---~~~vs~RDfV~~r~~~-~~~---~-~ 126 (208)
T cd08868 82 L-----------------------ECKIIQVI----DDNTDISYQVAAEAG---GGLVSPRDFVSLRHWG-IRE---N-C 126 (208)
T ss_pred c-----------------------ceEEEEEe----cCCcEEEEEEecCcC---CCcccccceEEEEEEE-ecC---C-e
Confidence 2 13444444 222233222221110 0124457888887642 332 2 1
Q ss_pred eEEEEeeccCC----CCCC--CCccCCccEEecC
Q 004776 579 AELVFAPIDAS----FSDD--APIIPSGFRIIPL 606 (731)
Q Consensus 579 s~vVyAPvD~~----d~~~--v~LLPSGF~IlP~ 606 (731)
-.++...|+-+ .+.+ +..+++||.|-|+
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~ 160 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL 160 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC
Confidence 23344444432 1233 5678899999995
No 78
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=88.39 E-value=29 Score=36.02 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=35.6
Q ss_pred CCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhhhc
Q 004776 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (731)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd~R~eWd~l 497 (731)
.+|..+.. .+++.+..+|..+ + + .+=--++++=+ +.||..|+..+-+.|.+||..
T Consensus 27 k~w~~~~~--~~~~e~~ykK~~d---~-~------------~lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~ 81 (205)
T cd08909 27 KGWISCSS--SDNTELAYKKVGD---G-N------------PLRLWKVSVEV-EAPPSVVLNRVLRERHLWDED 81 (205)
T ss_pred cCCcccCC--cCCeEEEEecCCC---C-C------------ceEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhh
Confidence 47877743 4778898888641 1 1 13334567888 677776655555579999964
No 79
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=88.09 E-value=35 Score=35.22 Aligned_cols=71 Identities=11% Similarity=0.217 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHH
Q 004776 405 ALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL 484 (731)
Q Consensus 405 ~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf 484 (731)
+.++-=++.|..-+.. .++|..-. +..++|+|.+++..+ .| .+-+.-+-+ ++||+.||
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~----------------~~--~~fk~~~~v-~~~~~~l~ 65 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPF----------------HG--KTFILKAFM-QCPAELVY 65 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCC----------------CC--cEEEEEEEE-cCCHHHHH
Confidence 3444444555544433 45898542 335788998866531 12 333667778 79999998
Q ss_pred H-HHhh--hchhhhhc
Q 004776 485 R-FLRE--HRSEWADS 497 (731)
Q Consensus 485 ~-FLRd--~R~eWd~l 497 (731)
+ .|.| .|.+||..
T Consensus 66 ~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 66 QEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHhChhhccccCcc
Confidence 5 5677 89999964
No 80
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=87.85 E-value=0.82 Score=47.64 Aligned_cols=111 Identities=25% Similarity=0.389 Sum_probs=83.2
Q ss_pred eeChhHHHHHhcC---cchhhhhCCcceEeeecc-CCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEEe
Q 004776 228 GLDPTRVAEILKD---RPSWYRDCRSVEVVNVLP-TGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCER 303 (731)
Q Consensus 228 ~m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~-~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDv 303 (731)
.+.|..+-++|+| +.+|=.+--.+++|+..+ +| -+++|-+.+.|.|+- .||+-++|---+.++-.-+||-.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg----~~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~ 137 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTG----TEVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSK 137 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCC----ceEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEe
Confidence 3578899999999 468888888889999887 44 246777888998775 59999998877777777788888
Q ss_pred ecCCCCCCCCCCCCCccccccccCCcceEe-----ecCCC-ccEEEEEEe
Q 004776 304 SLNNTQNGPSMPQAPHFVRAEMLPSGYLIR-----PCEGG-GSIIHIVDH 347 (731)
Q Consensus 304 Sld~~~~~~~~~~~~~~~r~~rlPSGclIq-----~~~nG-~skVtwVeH 347 (731)
|+.. +..|+...++|..-.=||.+|| +=++| .|-++|++|
T Consensus 138 ~v~h----~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 138 SVQH----PSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred cccC----CCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 7763 3445555678888889999999 44555 345555554
No 81
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=86.59 E-value=28 Score=36.13 Aligned_cols=55 Identities=13% Similarity=0.307 Sum_probs=38.2
Q ss_pred CCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhhhc
Q 004776 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (731)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd~R~eWd~l 497 (731)
.+|..+. ..+.|.++.+|.. ++ ..+.--++++-+ |.+|..|...|-|-|.+||..
T Consensus 27 k~w~~~~--~~~~~el~~~k~~---~g-------------s~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 27 KGWVSYS--TSEQAELSYKKVS---EG-------------PPLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred cCCcccC--CCCcEEEEEeccC---CC-------------CCcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 3777774 3577899998863 22 236667777888 677777775555559999974
No 82
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=86.25 E-value=13 Score=39.24 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccccCCC-----cceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccc
Q 004776 402 ALRALSQRLSRGFNEALNGFTDEGWSMLESDGI-----DDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQ 476 (731)
Q Consensus 402 sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~ 476 (731)
-|+.||..-+.-|- .+.-...--|.+..+.+. |....+..+.. + ...++..+..+-++-+.
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~----~--------~~~~~~~~eASR~~glV- 68 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG----G--------SKPGGFTTEASRACGLV- 68 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCcC----C--------CCCCCCeEEEEeeeEEE-
Confidence 58899999999998 555666778998765532 22111111111 1 00124577888888888
Q ss_pred cCChHHHHHHHhhhchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEeccccc--CCCCceEEEEEeecccccccc
Q 004776 477 DVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHT--IEHEEFLEVIKLENMAHYRED 554 (731)
Q Consensus 477 pvpp~~vf~FLRd~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g--~~~~n~vsllr~~~~~~~~~~ 554 (731)
++.|..|.++|.|. .+|-.+.....+. ...+.-|..| ...+..+.|+..+-+-.+ -
T Consensus 69 ~m~~~~lVe~lmD~-~kW~~~Fp~iv~~-------------------a~tl~vistg~~g~~~G~lqlmyael~~pS--p 126 (229)
T cd08875 69 MMNAIKLVEILMDV-NKWSELFPGIVSK-------------------AKTLQVISTGNGGNRNGTLQLMYAELQVPS--P 126 (229)
T ss_pred ecCHHHHHHHHhCh-hhhhhhhhhhcce-------------------eeEEEEeeCCCCCCCCceehhhhhhcccCc--c
Confidence 79999999999993 3455531110110 1111111111 223446777776644332 3
Q ss_pred CCCCCceEEEeeccCCCCCCCCCceEEEEe-eccCC----CCC---CCCccCCccEEecC
Q 004776 555 MIMPSDIFLLQLCSGVDENAVGNCAELVFA-PIDAS----FSD---DAPIIPSGFRIIPL 606 (731)
Q Consensus 555 ~~~~~~~liLQe~~~~De~~sGs~s~vVyA-PvD~~----d~~---~v~LLPSGF~IlP~ 606 (731)
-+..|+..+|.-|...+ . |..+|-- .+|-. .+. .--.+||||-|-|.
T Consensus 127 LVp~Re~~fLRyc~~l~---d--G~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~ 181 (229)
T cd08875 127 LVPTREFYFLRYCKQLE---D--GLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDM 181 (229)
T ss_pred cccCCeEEEEEEEEEeC---C--CeEEEEEEeecccccCCCCCCccEEEEecCcEEEEEC
Confidence 46778999999986544 2 4455432 44432 112 12479999999883
No 83
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=85.67 E-value=13 Score=37.08 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=61.1
Q ss_pred eEEEEEeecccccCChHH-HHHHHhh--hchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEE
Q 004776 465 AVLCAKASMLLQDVPPAI-LLRFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLE 541 (731)
Q Consensus 465 ~VL~A~tS~wL~pvpp~~-vf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vs 541 (731)
.+-..++...+ +.+|+. +.++|.| .|.+||....+ .+.+-.+. .++.|-
T Consensus 43 ~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~-----------------------~~~ie~~~----~~~~i~ 94 (206)
T smart00234 43 PGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAK-----------------------AETLEVID----NGTVIY 94 (206)
T ss_pred ceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhccc-----------------------EEEEEEEC----CCCeEE
Confidence 36677888888 678885 6678887 79999964211 23343332 233333
Q ss_pred EEEeeccccccccCCCCCceEEEeeccCCCCCCCCCceEEEEe-eccCC----CCCC--CCccCCccEEecC
Q 004776 542 VIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFA-PIDAS----FSDD--APIIPSGFRIIPL 606 (731)
Q Consensus 542 llr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~s~vVyA-PvD~~----d~~~--v~LLPSGF~IlP~ 606 (731)
....+..- .-+-.||..++.-+. .|+ .| +++|.. -++-. .+.. +.++++||.|-|+
T Consensus 95 ~~~~~~~~----~p~~~RDfv~~r~~~-~~~--~~--~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 95 HYVSKFVA----GPVSPRDFVFVRYWR-ELV--DG--SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred EEEEeccc----CcCCCCeEEEEEEEE-EcC--CC--cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEEC
Confidence 33332221 134568888888753 342 33 344433 45443 2233 2589999999996
No 84
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=85.05 E-value=29 Score=34.53 Aligned_cols=149 Identities=19% Similarity=0.305 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHH
Q 004776 406 LSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLR 485 (731)
Q Consensus 406 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~ 485 (731)
|+.+....|.. ......++|.........++. +++... + . +..+...++..-+ +.++..+|.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~---~-~----------~~~~~~~k~~~~v-~~~~~~~~~ 63 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVY--YKKVSP---S-D----------SCPIKMFKAEGVV-PASPEQVVE 63 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEE--EEEEEC---S-S----------STSCEEEEEEEEE-SSCHHHHHH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEE--EEEeCc---c-c----------cccceEEEEEEEE-cCChHHHHH
Confidence 55566666663 336678899988633333433 444321 1 0 1145567777888 788887777
Q ss_pred HHhhhchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEe
Q 004776 486 FLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQ 565 (731)
Q Consensus 486 FLRd~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQ 565 (731)
.|.+.+.+||....+ .+.+-.+ ++++.|.....+..-. ..+.+||.++++
T Consensus 64 ~~~~~~~~Wd~~~~~-----------------------~~~le~~----~~~~~i~~~~~~~~~~---~p~~~RDfv~~~ 113 (206)
T PF01852_consen 64 DLLDDREQWDKMCVE-----------------------AEVLEQI----DEDTDIVYFVMKSPWP---GPVSPRDFVFLR 113 (206)
T ss_dssp HHHCGGGHHSTTEEE-----------------------EEEEEEE----ETTEEEEEEEEE-CTT---TTSSEEEEEEEE
T ss_pred HHHhhHhhcccchhh-----------------------heeeeec----CCCCeEEEEEecccCC---CCCCCcEEEEEE
Confidence 777643399976321 2334333 2334455554443220 135668898888
Q ss_pred eccCCCCCCCCCceEEEEeeccCCC-----CCCC--CccCCccEEecC
Q 004776 566 LCSGVDENAVGNCAELVFAPIDASF-----SDDA--PIIPSGFRIIPL 606 (731)
Q Consensus 566 e~~~~De~~sGs~s~vVyAPvD~~d-----~~~v--~LLPSGF~IlP~ 606 (731)
-.. .+ ..| .-.+++..||-.. +..| -+++|||.|-|+
T Consensus 114 ~~~-~~--~~~-~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 114 SWR-KD--EDG-TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL 157 (206)
T ss_dssp EEE-EC--TTS-EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE
T ss_pred EEE-Ee--ccc-eEEEEEeeeccccccccccCcceeeeeeEeEEEEEc
Confidence 753 33 232 2355566777652 2333 489999999994
No 85
>smart00338 BRLZ basic region leucin zipper.
Probab=83.84 E-value=4.8 Score=33.73 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
|..+...+..+|..|..++..|..|+..|++++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445556666677777777777777777777653
No 86
>smart00340 HALZ homeobox associated leucin zipper.
Probab=82.64 E-value=2.5 Score=33.20 Aligned_cols=26 Identities=42% Similarity=0.433 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLVY 121 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~~ 121 (731)
+.|+..++.|.+||.+|++|+++||.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45888899999999999998888775
No 87
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.22 E-value=4.6 Score=32.14 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 92 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 92 ~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
+...+.|++.++.++.++++|.++.+.|+.|...|+..+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556777777777777776666666666666555544
No 88
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=79.65 E-value=2.4 Score=50.71 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=44.3
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
...|...|..|..|+......++.+. |+..+-||.||+++++....-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 78899999999999999999999999 9999999999999999877644
No 89
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=79.11 E-value=3 Score=44.09 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=39.3
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
..++|.... ..++|+|.++... .+++-+.=+-+ ++|++.||++|.| .|.+||..
T Consensus 53 ~~~~W~l~~--~k~gIkVytr~~s-------------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVAS--STTSVTLYTLEQD-------------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEEE--cCCCEEEEEecCC-------------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 467897653 3578999987631 23333444446 8999999999998 89999964
No 90
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=79.10 E-value=4.2 Score=41.63 Aligned_cols=58 Identities=14% Similarity=0.365 Sum_probs=39.5
Q ss_pred CCCccccccCCCc--ceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 423 DEGWSMLESDGID--DVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 423 ~~~W~~l~~~g~~--dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
+++|........+ +|+|-.|+.. + .++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-------------TGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-------------CCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987643222 3676555542 1 12334566677767899999999998 89999975
No 91
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=79.02 E-value=3.3 Score=33.65 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=35.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhh
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRR 79 (731)
+|+|..+|-+|...+-..++..+ ...++|+++ |++..+|..|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhHH
Confidence 46788999988887777787776 578899999 999999999998853
No 92
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=77.34 E-value=30 Score=32.15 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=70.4
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCce-eeEEeeeeeeCCCeEEE
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARD-FWLLRYTSVLEDGSLVV 300 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re-~~fLRyckq~~~G~waV 300 (731)
|++-.|...+..+-+++.|.+.|.+-+|.++-..++..+.++.. + +. ..|. +.+++|+.. ++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~--~--~~-------~~~~~~~~~~~~~~------v~ 64 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVV--L--EQ-------TGKQGILFFKFEAR------VV 64 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEE--E--EE-------eeeEEEEeeeeeEE------EE
Confidence 34566778899999999999999999998866665543333310 0 00 0111 223334322 12
Q ss_pred EEeecCCCCCCCCCCCCCcccccccc----C--Ccc-eEeecCC-CccEEEEEEeeeccCCCccccchhhhhhhHHHHHH
Q 004776 301 CERSLNNTQNGPSMPQAPHFVRAEML----P--SGY-LIRPCEG-GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQK 372 (731)
Q Consensus 301 vDvSld~~~~~~~~~~~~~~~r~~rl----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar 372 (731)
.++..... . ....+.+.. + .|+ -+++.++ |.+.|+|--|++... .++ -++++.-+-=+.+
T Consensus 65 ~~~~~~~~--~------~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~~~ 132 (144)
T cd08866 65 LELREREE--F------PRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQDLP 132 (144)
T ss_pred EEEEEecC--C------CceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHHHH
Confidence 22111000 0 000111110 1 222 3678887 789999988877653 333 3555444333666
Q ss_pred HHHHHHH-HHh
Q 004776 373 TTMAALR-HLR 382 (731)
Q Consensus 373 ~w~~aLr-~~e 382 (731)
..+.+|| +||
T Consensus 133 ~~l~~lr~~ae 143 (144)
T cd08866 133 TNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHh
Confidence 7777775 555
No 93
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=76.83 E-value=5.2 Score=41.09 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=45.5
Q ss_pred HHhhcc--CCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--
Q 004776 414 FNEALN--GFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE-- 489 (731)
Q Consensus 414 F~~~v~--~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd-- 489 (731)
||.=|. .-.+.+|..... .++|+|-.|... + ..+.--++...++.++|+.++++|.|
T Consensus 13 ~~~~~~~~~~~~~~W~l~~~--~~~i~Vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~ 73 (207)
T cd08910 13 ACAELQQPALDGAAWELLVE--SSGISIYRLLDE----Q-------------SGLYEYKVFGVLEDCSPSLLADVYMDLE 73 (207)
T ss_pred HHHHhcCCCCCCCCeEEEEe--cCCeEEEEeccC----C-------------CCcEEEEEEEEEcCCCHHHHHHHHhCHH
Confidence 443444 234467987753 468999877653 1 23445677778856999999999998
Q ss_pred hchhhhhc
Q 004776 490 HRSEWADS 497 (731)
Q Consensus 490 ~R~eWd~l 497 (731)
.|.+||..
T Consensus 74 ~r~~Wd~~ 81 (207)
T cd08910 74 YRKQWDQY 81 (207)
T ss_pred HHHHHHHH
Confidence 89999975
No 94
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=76.63 E-value=15 Score=38.83 Aligned_cols=47 Identities=32% Similarity=0.369 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 85 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 85 kq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
..++..++.+|+.|++.|+.|..++.++..++..++.|.+.++++.+
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 45677888999999999999999999999988888988888887654
No 95
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=72.66 E-value=6.9 Score=42.39 Aligned_cols=35 Identities=23% Similarity=0.110 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHhhhh
Q 004776 98 LTAMNKLLMEENDRL----QKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 98 L~a~n~~l~ee~~~l----~~e~~~L~~ena~Lk~el~~ 132 (731)
+.+||+.|++++.++ +...+.|+.||++||+.|.-
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444445555544433 22333488999999987764
No 96
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.25 E-value=14 Score=34.44 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=26.8
Q ss_pred hhhhhhhhhhh--hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004776 68 PKQIKVWFQNR--RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQK 114 (731)
Q Consensus 68 ~rQVkvWFQNR--RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~ 114 (731)
.-+...||++. +.-.+.+++...++.++.+++.+|+.|+++..+++.
T Consensus 14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45677899765 333334445555556666666666666555555543
No 97
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=70.74 E-value=6.5 Score=40.32 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=40.0
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
-..+|..... .++|+|-.|...+ .++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-----------------s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-----------------TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-----------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 3456987753 4679988776641 11223555454558999999999998 89999975
No 98
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=70.24 E-value=6.9 Score=41.49 Aligned_cols=55 Identities=16% Similarity=0.409 Sum_probs=43.2
Q ss_pred CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
...++|..-. ..++|+|.++. + +.+++-++-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~--~-----------------s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLE--E-----------------HDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEec--C-----------------CCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 4578998653 35789999874 1 125788888888 8999999999998 89999964
No 99
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=70.08 E-value=8.6 Score=41.00 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHhhhh
Q 004776 97 KLTAMNKLLMEENDRLQKQVS---QLVYENTFFRQQTQN 132 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~---~L~~ena~Lk~el~~ 132 (731)
++.++|+.|++|+.+++.+.. +++.||.+||+.|.-
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555556666555554443 578889888887653
No 100
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=68.85 E-value=17 Score=29.51 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhh
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
..++.+++.|..+|..|++++..
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 101
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=68.80 E-value=11 Score=40.60 Aligned_cols=28 Identities=36% Similarity=0.331 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
..|..||..|..++.+|+.|+..|++-+
T Consensus 225 ~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555443
No 102
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.43 E-value=27 Score=30.55 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
..|+.+++.+++++..+..+-..|+.||.+|+++..
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666666666666554
No 103
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.20 E-value=15 Score=29.27 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+..+++.|+..-+.|..+-..|..||..|+.|+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666655
No 104
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=67.58 E-value=32 Score=33.29 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=60.8
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHh--hccccccCCceeeEEeeeeeeCCCeEEE
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQL--YAPTTLAPARDFWLLRYTSVLEDGSLVV 300 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~--~v~SPLVp~Re~~fLRyckq~~~G~waV 300 (731)
.+-+|.-.+..+-+++-|..+|-+.||.+.-+.++..|..|.. +.+ +...+ ..+.-|.=|.+ +....|-|
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR----FRLTMHPDAN--GTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE----EEEEEEeccC--CEEEEEEEEEE--ecCCCcEE
Confidence 4556777899999999999999999998766665555543311 223 22221 12222322333 23334433
Q ss_pred EEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeecc
Q 004776 301 CERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLE 351 (731)
Q Consensus 301 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 351 (731)
.=..+.. +| | ..+=-...+++.++| |+|++.-+.+..
T Consensus 77 ~~~~~~~---~p-------~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 77 RARRVET---GP-------F---AYMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEEEecC---CC-------c---ceeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 3112211 11 1 112233456888887 999999998865
No 105
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=67.26 E-value=1.6e+02 Score=30.34 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHH
Q 004776 403 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 482 (731)
Q Consensus 403 l~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~ 482 (731)
-.++++.....|-.-. ...++|.... .+.++++|.++...+ .| ---++-.-+ |+|++.
T Consensus 6 y~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~----------------~~--k~~k~e~~i-~~~~~~ 63 (209)
T cd08905 6 YIKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPD----------------IG--KVFRLEVVV-DQPLDN 63 (209)
T ss_pred HHHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCC----------------CC--cEEEEEEEe-cCCHHH
Confidence 3445555555555444 2456898763 335667888755431 12 333455667 899999
Q ss_pred HHHHHhh---hchhhhhc
Q 004776 483 LLRFLRE---HRSEWADS 497 (731)
Q Consensus 483 vf~FLRd---~R~eWd~l 497 (731)
||++|.+ .+.+|+..
T Consensus 64 l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 64 LYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHhchhhhceeccc
Confidence 9977774 89999975
No 106
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=66.60 E-value=47 Score=30.47 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=63.0
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEE
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (731)
.+-.+...+.++.++|.|.+.|.+-+|.++-+..+..|. ..+ +....+ .|+ ..|.-...+|...-++..+++.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~---~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNE---YEA-TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCe---EEE-EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEE
Confidence 344567788999999999999999999876555544221 110 011111 222 12322234554433344444432
Q ss_pred eecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhh
Q 004776 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 363 (731)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~ 363 (731)
..... . .+.+ .=--+-+.+. +|+|+|||.-+++..- .+..+..+++
T Consensus 79 ~~~~~---~-------~~~~---~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 79 EGKGG---A-------GFVK---GTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred EEcCC---C-------ceEE---EEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 11110 0 0111 1122446777 6779999999999653 3333444443
No 107
>smart00338 BRLZ basic region leucin zipper.
Probab=65.64 E-value=42 Score=28.04 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 123 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~en 123 (731)
++|.|++.....++..-..|..+|..|..+...+..+...|+.++
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666777777777777777777777777777776654
No 108
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=65.24 E-value=9.6 Score=40.45 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=39.5
Q ss_pred CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
...++|..-.. .++|+|.++... -+++-++=+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s-------------------~~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED-------------------KFLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC-------------------CccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678976542 478999985431 01233555677 8999999999998 89999964
No 109
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=65.02 E-value=11 Score=38.78 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh----hchhhhhc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE----HRSEWADS 497 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd----~R~eWd~l 497 (731)
..++|.... + .++|+|.++++.. .. |-+ -++-.-+ |++|+.||++|.| .|.+||..
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~--~~-------------~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAE--FA-------------GNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCC--CC-------------CcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567898775 3 3699999998752 11 223 4445566 8999999999984 68999964
No 110
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=64.01 E-value=39 Score=31.38 Aligned_cols=134 Identities=14% Similarity=0.130 Sum_probs=72.5
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEE
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (731)
.+-.|...+..+.+++-|.+.|.+.+|.++-..++..+.++ +.+++.+..|. -.|++. .|++- ..+..+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE----LEAELTVGFGG-IRESFT-SRVTL--VPPESI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE----EEEEEEEeecc-ccEEEE-EEEEe--cCCCEE-EE
Confidence 34566677888999999999999999876544444433222 11222232222 133333 33332 112222 11
Q ss_pred eecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-HHH
Q 004776 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHL 381 (731)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aL-r~~ 381 (731)
.++++ + | ..+=--..+++.++|.|+|+|.-|++..- .++.+|++.-+.=..+..+.++ +.|
T Consensus 74 ~~~~g----~-------~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDG----P-------F---KHLEGEWRFKPLGENACKVEFDLEFEFKS----RLLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCC----C-------h---hhceeEEEEEECCCCCEEEEEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 0 1 11123456789999999999999999862 2344444332233456666666 355
Q ss_pred hh
Q 004776 382 RQ 383 (731)
Q Consensus 382 e~ 383 (731)
++
T Consensus 136 ~~ 137 (138)
T cd07813 136 KQ 137 (138)
T ss_pred hh
Confidence 54
No 111
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=63.16 E-value=18 Score=39.38 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
+..+.+.|..+|++|..++++|.-|..+|||=+
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555656666666543
No 112
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.79 E-value=59 Score=27.12 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 95 n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
-..|......+..++..|..++..|..++..|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334555556666666666666666666666665554
No 113
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=61.26 E-value=39 Score=32.82 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~ 131 (731)
..|..|+.+|+.||++++.|++
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544443
No 114
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=60.90 E-value=26 Score=36.89 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=45.8
Q ss_pred hhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEE-EEEeecccccCChHHHHHHHhh--hch
Q 004776 416 EALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVL-CAKASMLLQDVPPAILLRFLRE--HRS 492 (731)
Q Consensus 416 ~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL-~A~tS~wL~pvpp~~vf~FLRd--~R~ 492 (731)
-+.-+-.+++|..... .++|+|-.|...+ .|.++ .-++..-++.++++.++++|.| .|.
T Consensus 18 ~~~~~~~~~~W~l~~~--~~gikVy~r~~~~----------------sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~ 79 (235)
T cd08872 18 YALEDVGADGWQLFAE--EGEMKVYRREVEE----------------DGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRM 79 (235)
T ss_pred HHHccCCCCCCEEEEe--CCceEEEEEECCC----------------CCceeeeEEEEEEECCCCHHHHHHHHhChhhHH
Confidence 3444556668987753 4679998877641 12232 3677778866999999999998 899
Q ss_pred hhhhc
Q 004776 493 EWADS 497 (731)
Q Consensus 493 eWd~l 497 (731)
+||..
T Consensus 80 ~Wd~~ 84 (235)
T cd08872 80 DWETT 84 (235)
T ss_pred HHHhh
Confidence 99963
No 115
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=59.62 E-value=27 Score=40.29 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhcc
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~~ 137 (731)
.|+......-++|.+|++++++|..+|.-|-++|.++-++.
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 34555566677888999999999999999999999885544
No 116
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.92 E-value=33 Score=39.82 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHH
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLI 57 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA 57 (731)
.++++++..|.- +.-.|...-|--.+
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva 66 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVA 66 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHH
Confidence 678888777753 34556555454443
No 117
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=58.61 E-value=15 Score=42.90 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 105 LMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 105 l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
|......+.+|-++|+.||+-||++|.-+
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33334556666678889999999988865
No 118
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.20 E-value=56 Score=28.55 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 87 ~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
+...++.+++.|+.+|..+.+++..|..+-++|+.|....+..|..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777776665555543
No 119
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=57.89 E-value=1.4e+02 Score=26.81 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=27.4
Q ss_pred eeEEeeChhHHHHHhcCcchhhhhCCcceEeeecc
Q 004776 224 CGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLP 258 (731)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 258 (731)
+..|...+..+-+.|.|.+.|.+-+|.+..+....
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~ 40 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEG 40 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeec
Confidence 34567788899999999999998888776555544
No 120
>PRK10724 hypothetical protein; Provisional
Probab=57.42 E-value=81 Score=31.18 Aligned_cols=134 Identities=10% Similarity=0.189 Sum_probs=74.7
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEE
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVC 301 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 301 (731)
+.+.+|.-.+..+.+.+.|.++|-+.+|-..-..++....++ +.+++.+--.- ..+-|.-|+.-. .++ .+.+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556788889999999999999999988855333333322233 23444432222 233333333332 233 3222
Q ss_pred EeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHH--HHHHHHHHHH
Q 004776 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLI--AQKTTMAALR 379 (731)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~af--gar~w~~aLr 379 (731)
..+++ | | +.+=.-.-+++.++|.|+|+.--+.|+.. .||.+++ +..| .++..+.|.+
T Consensus 90 -~~~~G----p-------F---~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~--~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 90 -QLVDG----P-------F---KKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAF--GRVFKELASNMVQAFT 148 (158)
T ss_pred -EecCC----C-------h---hhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22232 2 1 22334445678888889999988888652 3444444 3333 5666666663
Q ss_pred -HHhhh
Q 004776 380 -HLRQI 384 (731)
Q Consensus 380 -~~e~l 384 (731)
.++.+
T Consensus 149 ~Ra~~~ 154 (158)
T PRK10724 149 VRAKEV 154 (158)
T ss_pred HHHHHH
Confidence 45443
No 121
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=57.24 E-value=36 Score=31.56 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=25.5
Q ss_pred eeEEeeChhHHHHHhcCcchhhhhCC--cceEee
Q 004776 224 CGLVGLDPTRVAEILKDRPSWYRDCR--SVEVVN 255 (731)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~--~~~~l~ 255 (731)
+.+|.-.+..+-++|-|.++|-+..| .++++.
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~ 37 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPTVHVERLE 37 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEE
Confidence 45677788999999999999999778 445444
No 122
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.22 E-value=46 Score=34.68 Aligned_cols=41 Identities=17% Similarity=-0.004 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 92 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 92 ~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
.+....|+.+|+.++++...++.+...|+.||..++++...
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444577777777777777777777777777777766543
No 123
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.15 E-value=47 Score=29.67 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=30.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 89 ~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
..++.+-+.|+..|..+.+++..+...-..|..||.+||+|..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455666677777777777776666666668888888888865
No 124
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.78 E-value=61 Score=34.30 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 88 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 88 ~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
...++.++..|..++..+..+....+..+..|+.||.+|.+++.+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666666666666666666677777888888888877765
No 125
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=52.90 E-value=20 Score=39.59 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEeeccCC----------CCCCCCccCCccEEecCCC
Q 004776 580 ELVFAPIDAS----------FSDDAPIIPSGFRIIPLDS 608 (731)
Q Consensus 580 ~vVyAPvD~~----------d~~~v~LLPSGF~IlP~~~ 608 (731)
++|.-||-.+ .+=+|-.=|-|.-|-|.++
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g~ 375 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTGS 375 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccCC
Confidence 5777777765 3556777788888888643
No 126
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=51.49 E-value=47 Score=35.82 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 004776 102 NKLLMEENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (731)
Q Consensus 102 n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~ 135 (731)
...+......|++|-+.|+.+..+|++|+..+..
T Consensus 217 ~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 217 EDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666677777777777766643
No 127
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.23 E-value=95 Score=27.21 Aligned_cols=42 Identities=26% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 90 ~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.++.+-+.|+..|..+..+....+.....|+-||.+||+|-.
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655555555667788888887753
No 128
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=49.22 E-value=82 Score=38.51 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=55.0
Q ss_pred cCChHHHHHHHhh---hchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccc
Q 004776 477 DVPPAILLRFLRE---HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYRE 553 (731)
Q Consensus 477 pvpp~~vf~FLRd---~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~ 553 (731)
+.+|+.||++|-+ .|.|||.... . .+.+-+| +...+|.--++...-. -
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~~~---------~--------------~~vIE~I----D~htdI~Y~~~~~~~~--~ 286 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCSFQ---------Y--------------GSLVEEV----DGHTAILYHRLQLDWF--P 286 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhccc---------c--------------eEEEEEe----cCCeEEEEEEeccccc--c
Confidence 7899999999974 8999996421 1 2333333 3333444334321100 0
Q ss_pred cCCCCCceEEEeeccCCCCCCCCCceEEE-EeeccCCC----CCCC--CccCCccEEecC
Q 004776 554 DMIMPSDIFLLQLCSGVDENAVGNCAELV-FAPIDASF----SDDA--PIIPSGFRIIPL 606 (731)
Q Consensus 554 ~~~~~~~~liLQe~~~~De~~sGs~s~vV-yAPvD~~d----~~~v--~LLPSGF~IlP~ 606 (731)
.-+-+||-.++.-- .-+| . |+|++ |-+|.-.. +.+| -+-|+||.|.|+
T Consensus 287 ~~ispRDFV~~Ryw-rr~e--D--GsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL 341 (719)
T PLN00188 287 MFVWPRDLCYVRYW-RRND--D--GSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPL 341 (719)
T ss_pred CccCcceeEEEEEE-EEcC--C--CcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEEC
Confidence 12446777777762 2332 3 44655 55565542 3333 378999999996
No 129
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.07 E-value=2.8e+02 Score=30.49 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=28.5
Q ss_pred hhhHHHHHHH-HHHHHHHhHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHhHHHHHhhhhhh
Q 004776 78 RRCREKQRKE-ASRLQAVNRKLTAMNKLLME-----ENDRLQKQV--SQLVYENTFFRQQTQNAA 134 (731)
Q Consensus 78 RRaK~Krkq~-~~~l~~~n~~L~a~n~~l~e-----e~~~l~~e~--~~L~~ena~Lk~el~~~~ 134 (731)
-|+|.|.-+. ......+-..|+..-.+|+| |-.|.+.|+ ++-|.|..+|||=++.+.
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666664221 11122333444444444443 334444433 456677777887777663
No 130
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=48.89 E-value=3.4e+02 Score=28.42 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
...++|..-... +||.|..++++. .+|. |-=+- ..+ +.-|+.|+||+.+ +|.+||..
T Consensus 20 ~~~~~Wkl~k~~--~~~~v~~k~~~e--f~gk-------------l~R~E--gvv-~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKKS--KDVTVWRKPSEE--FGGY-------------LYKAQ--GVV-EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEeC--CCEEEEEecCCc--CCCc-------------eEEEE--EEe-cCCHHHHHHHHhcccchhcccch
Confidence 367899866433 889999988752 2322 21111 122 5788999999998 89999964
No 131
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=48.52 E-value=24 Score=29.68 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
.+-+.+++.+..|+.+..+|..||..||+..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788888888888888999999998653
No 132
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.51 E-value=65 Score=30.25 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+-.+-..|+.....+-.|=..|++||..||+.|...
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666677888888888887766
No 133
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=47.51 E-value=1.5e+02 Score=26.83 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=62.2
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEE
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (731)
.+-.|...+.++.+.|.|.+.|.+.+|.+.-+.++..+.+|.-.. ..+.+ ...+.++.+.++|...- +..+ -..
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-~~~i-~~~ 79 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEM--VRIGV--GAYGIKDTYALEYTWDG-AGSV-SWT 79 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEE--EEEEE--eeeeEEEEEEEEEEEcC-CCcE-EEE
Confidence 456677889999999999999999999886666555444332111 11111 22244555556665532 2221 111
Q ss_pred eecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccC
Q 004776 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEP 352 (731)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~ 352 (731)
. .++ . .+.... .-.-+++.++ +|+|||.-+++..-
T Consensus 80 ~-~~~---~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 80 L-VEG---E-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred E-ecc---c-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 1 111 0 011111 2356788877 59999999998753
No 134
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.62 E-value=63 Score=32.50 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 92 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 92 ~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
+.+|..++.++..+.++++.|+++...|..++..+++++.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444
No 135
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=45.82 E-value=59 Score=38.29 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004776 82 EKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFR 127 (731)
Q Consensus 82 ~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk 127 (731)
.|||+--..++..-.++.++|+.|+.||..|..++..|..||.++|
T Consensus 298 kKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 298 KKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3344444445555566777888888888888888877888877663
No 136
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=45.36 E-value=69 Score=35.05 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 121 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ 121 (731)
|-|.|||.+...+.-+-..|.++|+.|++...++++|++.|+.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666677888888888888888888876664
No 137
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=44.72 E-value=81 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+-.+-..|++....+-.|=..|++||..||+.|...
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566666666666677888888888888775
No 138
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.44 E-value=50 Score=28.03 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhHHHHHhhhh
Q 004776 111 RLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 111 ~l~~e~~~L~~ena~Lk~el~~ 132 (731)
.++++..+++.||..|++++++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 139
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.10 E-value=1.1e+02 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.|-..+..++++|..|..++..+..|++.|.+..+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444
No 140
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.52 E-value=1.6e+02 Score=25.52 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHhhh
Q 004776 100 AMNKLLMEENDRLQKQ-------VSQLVYENTFFRQQTQ 131 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e-------~~~L~~ena~Lk~el~ 131 (731)
..++.+..|.+....+ ..+|+.|+..|++|++
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 3455555555555554
No 141
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.12 E-value=46 Score=30.97 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLV 120 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~ 120 (731)
++++-..++.+++.++++|.+|..++..|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444443
No 142
>PF15058 Speriolin_N: Speriolin N terminus
Probab=42.46 E-value=49 Score=34.15 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~ 134 (731)
+-++...+++..||++|+|++. |..||.+||.-|...|
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 4456677888889999998886 7778998887765553
No 143
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.42 E-value=1.3e+02 Score=26.06 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHh
Q 004776 110 DRLQKQVSQLVYEN 123 (731)
Q Consensus 110 ~~l~~e~~~L~~en 123 (731)
.+|..++..|+.|+
T Consensus 50 ~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 50 NKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333343333
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.73 E-value=2.5e+02 Score=29.31 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.........|+++|.+|.++++.++.|+..|+.+++..
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445577777777777777777777777776655
No 145
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.51 E-value=58 Score=26.89 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
....+++..|..||..|+.+|.+.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778999999999999875
No 146
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.30 E-value=1.1e+02 Score=35.58 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 004776 88 ASRLQAVNRKLTAMNKLLMEEN 109 (731)
Q Consensus 88 ~~~l~~~n~~L~a~n~~l~ee~ 109 (731)
...+..+|+.|+++|+.|++..
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666666543
No 147
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=39.89 E-value=63 Score=32.81 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHH
Q 004776 405 ALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL 484 (731)
Q Consensus 405 ~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf 484 (731)
++.|.|..-|.. .++|.... ..++|+|.+++..+ . .+-+ .++..-+ |.+|+.||
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~--~-------------~~~~--~k~~~~i-~~~~~~v~ 62 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE--F-------------TGHL--YRAEGIV-DALPEKVI 62 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC--C-------------CCEE--EEEEEEE-cCCHHHHH
Confidence 444555544442 27898874 33689999875431 0 1212 3556677 79999999
Q ss_pred HHHhh----hchhhhhc
Q 004776 485 RFLRE----HRSEWADS 497 (731)
Q Consensus 485 ~FLRd----~R~eWd~l 497 (731)
++|.| .|.+||..
T Consensus 63 ~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 63 DVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHhcCcccccccccc
Confidence 99997 79999953
No 148
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.69 E-value=1e+02 Score=31.58 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 86 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 86 q~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
+....|.+.|..|+...+..+.+|+.|..++++|..+-.++++||.
T Consensus 74 qR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 74 QRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777777666666665
No 149
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=39.61 E-value=37 Score=32.52 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+++|.+++++|+.||-.||+++.+-
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4568899999999999999999875
No 150
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.21 E-value=72 Score=35.49 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004776 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQV 116 (731)
Q Consensus 87 ~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~ 116 (731)
+...|+++|++|++||..|+.+..+|+.+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666665544
No 151
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=38.90 E-value=35 Score=25.57 Aligned_cols=44 Identities=7% Similarity=0.127 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhH
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK 81 (731)
.+++.+...++..|... ....++|.++ |++...|+.|.+.-+.+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~----~~s~~~i~~~~~~~~~~ 53 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEIL----GISRSTVRQRLHRALKK 53 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 57888888888887533 3456778899 99999999998654443
No 152
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=38.56 E-value=76 Score=28.81 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHhHHHHHhhhhhhhc
Q 004776 101 MNKLLMEENDRLQK------QVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 101 ~n~~l~ee~~~l~~------e~~~L~~ena~Lk~el~~~~~~ 136 (731)
+|+.+++|+.-|+. ++-+...||-+|++|+.|..++
T Consensus 25 e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544443 3446778999999999887443
No 153
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=38.41 E-value=3e+02 Score=24.75 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEeeecc
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLP 258 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 258 (731)
.+-.|...+.++-++|.|...|.+-+|.+..+....
T Consensus 6 ~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~ 41 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLS 41 (139)
T ss_dssp EEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcc
Confidence 345677889999999999999999999887666554
No 154
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.41 E-value=1.2e+02 Score=30.53 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 004776 86 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (731)
Q Consensus 86 q~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~ 134 (731)
.++..++.++.+|...|+.|.+++..+.++.+.+..+...|-.-++|+.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666665555553
No 155
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.33 E-value=1.1e+02 Score=35.90 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 87 ~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+...++.+-++++.+.+.+......++.+++.|..||.+|+++++.+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555566666566666777888889999999999998643
No 156
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.06 E-value=1.2e+02 Score=26.93 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH---------HHHHHHHHHhHHHHH-H---HHHHHHHHHHHHHHHHHH
Q 004776 53 RQQLIRECPILSNIEPKQIKVWFQNRRCREKQR---------KEASRLQAVNRKLTA-M---NKLLMEENDRLQKQVSQL 119 (731)
Q Consensus 53 r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk---------q~~~~l~~~n~~L~a-~---n~~l~ee~~~l~~e~~~L 119 (731)
..++|+.+ |++++.++.|-+...-+-.+. ..-..++.- ..+.. . .+.++ +.-.+..+.+.|
T Consensus 4 i~e~A~~~----gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~i-~~L~~d~g~~l~~i~-~~l~l~~~~~~l 77 (91)
T cd04766 4 ISVAAELS----GMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRRI-QRLTQELGVNLAGVK-RILELEEELAEL 77 (91)
T ss_pred HHHHHHHH----CcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHHH-HHHHHHcCCCHHHHH-HHHHHHHHHHHH
Confidence 45678888 999999999986543332110 011111110 01111 1 11111 112366777778
Q ss_pred HHHhHHHHHhhhh
Q 004776 120 VYENTFFRQQTQN 132 (731)
Q Consensus 120 ~~ena~Lk~el~~ 132 (731)
+.+++.|++++.+
T Consensus 78 ~~~l~~l~~~~~~ 90 (91)
T cd04766 78 RAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888877754
No 157
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.17 E-value=89 Score=27.14 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..+++.+..+++.||..|+.|+.++
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555443
No 158
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.92 E-value=1e+02 Score=32.96 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhcc
Q 004776 92 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (731)
Q Consensus 92 ~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~~ 137 (731)
+..|.+|+.+.....+++..|+.|+..|+..|-+|-+.+.=+.++-
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3445556667777777788888888888889999888776664443
No 159
>PHA03162 hypothetical protein; Provisional
Probab=36.85 E-value=40 Score=32.80 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+++|.+|+++|+.||..||+++.+-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568899999999999999999653
No 160
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=36.71 E-value=72 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhh
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQN 77 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQN 77 (731)
.+++.|.+.+...|.+. ..-.++|..+ |++...|+.+...
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~l----g~s~~~V~~~~~~ 43 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERL----GISRSTVRRILKR 43 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHH----TSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHH----CCcHHHHHHHHHH
Confidence 57899999999999433 3467889999 9999998887653
No 161
>PHA03155 hypothetical protein; Provisional
Probab=36.28 E-value=41 Score=31.95 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.++|.+++++|+.||-.||+++.+-
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3568899999999999999998653
No 162
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.82 E-value=1.1e+02 Score=27.92 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 95 n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
|++|.++|+.++.|..-.+. ..+|++.|+..+-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~-----qvkn~~vrqknee 64 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAET-----QVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHH
Confidence 55666666666665444333 4467777766553
No 163
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=35.69 E-value=26 Score=29.46 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhh
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQ 76 (731)
++|.+||+++...+=..+. .......++|+++ ||++.++..|-+
T Consensus 2 ~~r~~ys~e~K~~~v~~~~----~~g~sv~~va~~~----gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYL----ESGESVSEVAREY----GISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHH----HHHCHHHHHHHHH----TS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCceEeeeccc----ccccccccHHHH
Confidence 4567999988776655552 1235678899999 999999999964
No 164
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=35.17 E-value=55 Score=26.95 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhHhcC--CCCCHHHHHHHHHhcCccCCCChhhhh
Q 004776 30 YTPEQVEALERLYHEC--PKPSSMRRQQLIRECPILSNIEPKQIK 72 (731)
Q Consensus 30 ~T~~Ql~~LE~~F~~~--~~Ps~~~r~~LA~~L~~~~gLs~rQVk 72 (731)
+|+.|.+.|...|+.. .+|-...-.+||.+| |+++.-+-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~l----gis~st~~ 41 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEEL----GISKSTVS 41 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHh----CCCHHHHH
Confidence 5889999999999887 457777889999999 99986543
No 165
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=34.64 E-value=96 Score=33.77 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHhhhhh
Q 004776 98 LTAMNKLLMEEND---RLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 98 L~a~n~~l~ee~~---~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+..+|+.+++++. ++..+.++|+.||.+||+.|.-.
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444555555543 34556778999999999888643
No 166
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=34.58 E-value=14 Score=43.70 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCCcccCCHHHHHHHHHh-HhcCCCCCHHHHHHHHHhcCccC-----CCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERL-YHECPKPSSMRRQQLIRECPILS-----NIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~-F~~~~~Ps~~~r~~LA~~L~~~~-----gLs~rQVkvWFQNRRaK~Krkq 86 (731)
|+++.+|-.+|...+... |-++.++..-...+...++ ++ ..+.+.|++||.|||.++|+-+
T Consensus 692 k~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~--~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 692 KKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEE--LLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred HHHHHHhhhcceeecchhheecccCchhHHHHHhhHHh--hcchhhhhhhhcchHHHHHHHHHHHhhhh
No 167
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.26 E-value=1.6e+02 Score=33.78 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 89 ~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+.+..++..++++.+.++......+.++++|+.||.+|.+|.-+.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888999998888887664
No 168
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.09 E-value=62 Score=29.56 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHhcCccCCCChhhhhhhhhh
Q 004776 53 RQQLIRECPILSNIEPKQIKVWFQN 77 (731)
Q Consensus 53 r~~LA~~L~~~~gLs~rQVkvWFQN 77 (731)
..++|+.+ |+++..++.|-++
T Consensus 3 i~EvA~~~----gVs~~tLR~ye~~ 23 (99)
T cd04765 3 IGEVAEIL----GLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHH----CcCHHHHHHHHHH
Confidence 34678888 9999999999765
No 169
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=33.02 E-value=1e+02 Score=27.70 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 105 LMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 105 l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+..+..+++++..+|+.||.+|+-|..++
T Consensus 40 ~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 40 LFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555666666666777776666655
No 170
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.88 E-value=3.6e+02 Score=24.09 Aligned_cols=37 Identities=16% Similarity=-0.018 Sum_probs=29.1
Q ss_pred eeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCC
Q 004776 224 CGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTG 260 (731)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g 260 (731)
+..|...+.++-++|-|.++|.+-.|.+..+...+.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCC
Confidence 4456678889999999999999999888666665433
No 171
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=32.74 E-value=4.1e+02 Score=26.65 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
+..+.+...+..++.+|..+|.+|...+.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666677777777777777765443
No 172
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=32.65 E-value=1.4e+02 Score=29.46 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=36.8
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 27 YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 27 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
...+|+.|.+.|+..+ +. ....++|..+ |++...|+.|-++.+.+.|+
T Consensus 4 ~~~Lt~rqreVL~lr~-~G-----lTq~EIAe~L----GiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 4 ESFLTERQIEVLRLRE-RG-----LTQQEIADIL----GTSRANVSSIEKRARENIEK 51 (141)
T ss_pred ccCCCHHHHHHHHHHH-cC-----CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 4578999999998843 22 3467899999 99999999998866555554
No 173
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.95 E-value=1.5e+02 Score=30.75 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
++..+..|.+.++.+..++..|..+++.|..||.+|..+.+.+
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 3344455555555555555555555666666666666555443
No 174
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=31.58 E-value=2.7e+02 Score=24.12 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 90 ~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.+-.....|+.+|..++++...+..+-.+|...|..-+..++.+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888888888888888888888888887766666543
No 175
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=30.24 E-value=1.1e+02 Score=20.09 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhh
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWF 75 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWF 75 (731)
.++.++...+...|.... ...++++++ +++...|..|.
T Consensus 5 ~~~~~~~~~i~~~~~~~~-----s~~~ia~~~----~is~~tv~~~~ 42 (42)
T cd00569 5 KLTPEQIEEARRLLAAGE-----SVAEIARRL----GVSRSTLYRYL 42 (42)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CCCHHHHHHhC
Confidence 466777766666665332 456788888 99998888773
No 176
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.20 E-value=1.5e+02 Score=31.35 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 004776 92 QAVNRKLTAMNKLLMEEN 109 (731)
Q Consensus 92 ~~~n~~L~a~n~~l~ee~ 109 (731)
..+++++.++-+.++++.
T Consensus 150 ~~~~~~~~~~~~kL~~el 167 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETEL 167 (216)
T ss_pred hhhHHHHHhhHHHHHHHH
Confidence 333444444444444444
No 177
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.00 E-value=2.7e+02 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+..+-..|+..-..|....+..+.+-.+|+.||..|++-+.-+
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555666666667777888888888877655
No 178
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.29 E-value=1.4e+02 Score=28.07 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhcc
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~~ 137 (731)
+...-..+-++...|..++..|..||+.|+-|.+.+...+
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556677777888888888888888888887765443
No 179
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.15 E-value=3.1e+02 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLM 106 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ 106 (731)
|+|.|++.....+......|..+|..|.
T Consensus 18 r~R~rkk~~~~~le~~~~~L~~en~~L~ 45 (54)
T PF07716_consen 18 RSRQRKKQREEELEQEVQELEEENEQLR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444444444444444443333
No 180
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=29.05 E-value=49 Score=26.42 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 94 VNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 94 ~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
.|..+...|..+.-....++++..+|..||..||++.
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3566777788888888899999999999999999865
No 181
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.82 E-value=3.4e+02 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=28.4
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhh
Q 004776 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRC 80 (731)
Q Consensus 26 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRa 80 (731)
.+..|+..++..|.. .. ..+++ |++-.+|+-.+.....
T Consensus 34 ~yR~Y~~~d~~~l~~------------I~-~lr~~----G~sl~eI~~~l~~~~~ 71 (116)
T cd04769 34 NYRVYDAQHVECLRF------------IK-EARQL----GFTLAELKAIFAGHEG 71 (116)
T ss_pred CceeeCHHHHHHHHH------------HH-HHHHc----CCCHHHHHHHHhcccc
Confidence 466899999888853 22 24677 9999999999976654
No 182
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=28.24 E-value=2.4e+02 Score=29.24 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 004776 89 SRLQAVNRKLTAMNKLLMEEN 109 (731)
Q Consensus 89 ~~l~~~n~~L~a~n~~l~ee~ 109 (731)
..++..|.+|..+|+.|++..
T Consensus 58 R~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 58 RGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555543
No 183
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.82 E-value=96 Score=33.07 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhhhhhhhcc
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENT---FFRQQTQNAATLA 137 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena---~Lk~el~~~~~~~ 137 (731)
.....+++||++|++|..+|+.++. .+++|.+++..+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888877 5577777776554
No 184
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=27.19 E-value=75 Score=24.69 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=21.0
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhh
Q 004776 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (731)
Q Consensus 26 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQ 76 (731)
++..+|.+|...++..+++. ....++|+.+ |.++..|.-+-+
T Consensus 1 ~~~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~l----g~s~sTV~relk 42 (44)
T PF13936_consen 1 KYKHLTPEERNQIEALLEQG-----MSIREIAKRL----GRSRSTVSRELK 42 (44)
T ss_dssp -----------HHHHHHCS--------HHHHHHHT----T--HHHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHcC-----CCHHHHHHHH----CcCcHHHHHHHh
Confidence 35689999999999988644 4567799999 999988876653
No 185
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.15 E-value=3.4e+02 Score=28.61 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 90 ~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.+..+...+..+.+.+...++++++.+..++.+.+.|+++++.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666666666666776666655
No 186
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.66 E-value=1.9e+02 Score=31.13 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=42.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHhhhhhhhcc
Q 004776 70 QIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV----YENTFFRQQTQNAATLA 137 (731)
Q Consensus 70 QVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~----~ena~Lk~el~~~~~~~ 137 (731)
.++.=|||.+.-.-++.+...+..++..+++....|..|.+.+++.+...+ .-++.|.++++.++-++
T Consensus 34 ~~a~~~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 34 MLAAVFQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 344556666544444444456667777777777777777777777666666 34566777777765444
No 187
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=2.4e+02 Score=31.68 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 84 QRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 84 rkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
.+++-.++..+.+.++...+.+++-..+|+.+++.|..|...|+..+
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444445555555555555555555554444444444444444333
No 188
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.34 E-value=5.2e+02 Score=23.14 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.3
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEe
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVV 254 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l 254 (731)
.+.+|...+.++-+.|.|...|.+.++.+...
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~ 35 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNPFVRSA 35 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccChhheeE
Confidence 45567778899999999999998888765433
No 189
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=24.31 E-value=2.2e+02 Score=32.54 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
++.+++.+..++..+..+..+++.|..++++|+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666677777665
No 190
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=24.16 E-value=5.9e+02 Score=23.70 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
..|+..-....+|..-+.+.+..+..+|..|..||.+....
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677778888888888888999999999999987543
No 191
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.97 E-value=2.1e+02 Score=33.07 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.6
Q ss_pred hhhh---hhhhhHHHH
Q 004776 72 KVWF---QNRRCREKQ 84 (731)
Q Consensus 72 kvWF---QNRRaK~Kr 84 (731)
-+|| |||.+|.+-
T Consensus 229 gcw~ay~Qnk~akehv 244 (575)
T KOG4403|consen 229 GCWFAYRQNKKAKEHV 244 (575)
T ss_pred hhhhhhhhhhHHHHHH
Confidence 5788 888887664
No 192
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.70 E-value=1.4e+02 Score=26.67 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 104 LLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 104 ~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.+.++|.+|+.+++.|..|...++.+++
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566666666666666666666665543
No 193
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=23.63 E-value=5.4e+02 Score=23.94 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 95 n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+..+...-...+......++..++++.+...-++++..+
T Consensus 48 ~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 48 NQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333334444455666667777777666666544
No 194
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=23.34 E-value=1.8e+02 Score=32.75 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 89 ~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
..++.+|+.|+.+|..|++++.++ +.++.||..|++.+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~----e~l~~En~~Lr~ll 97 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSY----EEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 344455555555555555444332 23556677666443
No 195
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.90 E-value=4.3e+02 Score=28.40 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=33.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 68 PKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 68 ~rQVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
...+..||+.+=...+.... .........+.+...++.....++.++..|+..|+.|..++.
T Consensus 186 ~~e~e~~y~~k~~~l~~~~~--~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 186 REELEEWYQSKLEELRQQSE--KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccc--ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 56788899877544443211 112223344455555555555555566666666666655554
No 196
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.53 E-value=5.4e+02 Score=23.34 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 93 ~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..-+.|...-+.|.+.++.+..++++|...|.+.|.+++.-
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667788888899999999999999988888765
No 197
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=22.48 E-value=1.1e+02 Score=28.88 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 107 EENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 107 ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.++.++.++.++|..||..||-+++-+
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777666543
No 198
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.44 E-value=2.8e+02 Score=26.06 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004776 76 QNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV 120 (731)
Q Consensus 76 QNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~ 120 (731)
|||-++.-+++ ....-+.|.+.+.+.+.+.++.+.+..+..+..
T Consensus 57 QNRq~~~dr~r-a~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~ 100 (108)
T PF06210_consen 57 QNRQAARDRLR-AELDYQINLKAEQEIERLHRKLDALREKLGELL 100 (108)
T ss_pred hhHhHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 67655332222 222223355555556666666555555444333
No 199
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=22.42 E-value=29 Score=36.49 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFF 126 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~L 126 (731)
.......|+.--+.|.++|++|.++.++|+.||++|
T Consensus 127 Q~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 127 QATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777778888888889988889999999988
No 200
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.25 E-value=2.9e+02 Score=33.02 Aligned_cols=57 Identities=28% Similarity=0.264 Sum_probs=35.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 75 FQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 75 FQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.||+.-+. .++...+...+..|+.++..+++++.+++.++.+.+.++..|+++.+.+
T Consensus 141 lQ~qlE~~--qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 141 LQNQLEEC--QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554432 3444556667777777777777777777777766666666666655533
No 201
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=22.04 E-value=5.9e+02 Score=22.96 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=27.2
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhh
Q 004776 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNR 78 (731)
Q Consensus 26 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNR 78 (731)
.+..|+.+++..|+.... .+.+ |++..+++-+++..
T Consensus 35 g~R~y~~~di~~l~~i~~-------------lr~~----g~~l~~i~~~~~~~ 70 (103)
T cd01106 35 GYRLYTEEDLERLQQILF-------------LKEL----GFSLKEIKELLKDP 70 (103)
T ss_pred CceeeCHHHHHHHHHHHH-------------HHHc----CCCHHHHHHHHHcC
Confidence 456799999999875432 3556 99999999998654
No 202
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.02 E-value=2.9e+02 Score=26.01 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004776 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (731)
Q Consensus 95 n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~e 129 (731)
...+......+.+++.++....+++..+...||+|
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555555555555554
No 203
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.93 E-value=2.3e+02 Score=26.84 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~ 135 (731)
+...-..+-++...|..++..|..||+.|+-|-+.+..
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777778888888888877665543
No 204
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.33 E-value=4.2e+02 Score=28.73 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~ 135 (731)
..|..+..++.....+..+|..+...|++|.+.+++
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777776643
No 205
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.75 E-value=4.9e+02 Score=24.66 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=12.1
Q ss_pred hhhhhhhhhhhhHHHH
Q 004776 69 KQIKVWFQNRRCREKQ 84 (731)
Q Consensus 69 rQVkvWFQNRRaK~Kr 84 (731)
||.+.||-+||.-..-
T Consensus 18 Rq~e~~FlqKr~~LS~ 33 (106)
T PF11594_consen 18 RQMEAFFLQKRFELSA 33 (106)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6779999888776543
No 206
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=20.72 E-value=1.3e+02 Score=32.97 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 004776 88 ASRLQAVNRKLTAMNKLLMEENDRL 112 (731)
Q Consensus 88 ~~~l~~~n~~L~a~n~~l~ee~~~l 112 (731)
-..|++.-.-|+..|+.|.||.+.|
T Consensus 314 VKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 314 VKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHHhHHHHHhcccHHHHHHHHHH
Confidence 3344444555555666666655443
No 207
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.58 E-value=3.7e+02 Score=30.27 Aligned_cols=63 Identities=29% Similarity=0.296 Sum_probs=35.7
Q ss_pred hhhhhhhhHHHHHH--HHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 004776 73 VWFQNRRCREKQRK--EASRLQAVNRKLTAMNKL---LMEENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (731)
Q Consensus 73 vWFQNRRaK~Krkq--~~~~l~~~n~~L~a~n~~---l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~ 135 (731)
-||=-=|-|.|+-+ ....++..-.++...++- ++|..++.+.+.++|+..|.+|+.||-++..
T Consensus 53 gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 53 GWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47755555555422 223334434444444433 3344445566778888888888888877643
No 208
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=20.42 E-value=90 Score=32.95 Aligned_cols=59 Identities=19% Similarity=0.431 Sum_probs=38.8
Q ss_pred CCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 420 GFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 420 ~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
+-.+.+|..+-.. .+++|.....+ . +|+ =.+.|- .-+..++|..|+||+-| -|.+||+.
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~---~-------~g~----~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~ 85 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRP---K-------TGL----YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDM 85 (219)
T ss_pred cCcccchhhhccc--CCceEEEEccc---C-------CCC----EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHH
Confidence 5677899877532 35666652111 1 121 235554 34558999999999998 79999986
No 209
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=20.40 E-value=3.6e+02 Score=33.49 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=38.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHhhhhh
Q 004776 71 IKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQ-----------VSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 71 VkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e-----------~~~L~~ena~Lk~el~~~ 133 (731)
...-|||.-.-..+ ....++..|++|...++.+++||.++.+. .++..+|..++|.|++.+
T Consensus 435 lN~~Lq~ql~es~k--~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~ea 506 (861)
T PF15254_consen 435 LNMSLQNQLQESLK--SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEA 506 (861)
T ss_pred HHHHHHHHHHHHHH--hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34556654433333 23456667777777777777777665332 245668888898888765
No 210
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.37 E-value=3.1e+02 Score=24.83 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 101 MNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 101 ~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
..+.+.+++..+.+.+..|..+|..|+++++
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566788888888999999999999998874
No 211
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=20.28 E-value=2e+02 Score=27.32 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004776 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (731)
Q Consensus 98 L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~ 128 (731)
.+.+-+.|++.+..|.....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677778888888888888888888873
No 212
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.13 E-value=3.3e+02 Score=27.44 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..+..+++.....+......+.+++...+|.+++.+++.+...|...||.|.+..
T Consensus 133 ~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 133 KLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!