Query 004776
Match_columns 731
No_of_seqs 323 out of 1568
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.2E-19 4.1E-24 183.5 15.6 198 169-384 21-229 (231)
2 2dmt_A Homeobox protein BARH-l 99.7 3.7E-17 1.3E-21 141.0 8.1 65 18-86 12-76 (80)
3 2da3_A Alpha-fetoprotein enhan 99.7 3.8E-17 1.3E-21 140.4 6.7 63 20-86 14-76 (80)
4 1wh5_A ZF-HD homeobox family p 99.7 5.8E-17 2E-21 140.3 6.3 61 20-84 14-78 (80)
5 2cue_A Paired box protein PAX6 99.6 5E-16 1.7E-20 133.9 9.5 63 22-88 6-68 (80)
6 1wh7_A ZF-HD homeobox family p 99.6 1.5E-16 5E-21 137.9 5.9 60 20-84 14-78 (80)
7 2kt0_A Nanog, homeobox protein 99.6 4.6E-16 1.6E-20 135.0 7.6 65 18-86 17-81 (84)
8 1nk2_P Homeobox protein VND; h 99.6 8.3E-16 2.8E-20 131.6 9.0 62 22-87 8-69 (77)
9 2cra_A Homeobox protein HOX-B1 99.6 3.2E-16 1.1E-20 131.8 6.2 61 22-86 6-66 (70)
10 2e1o_A Homeobox protein PRH; D 99.6 6.2E-16 2.1E-20 130.0 7.9 60 23-86 7-66 (70)
11 2dmu_A Homeobox protein goosec 99.6 5.8E-16 2E-20 130.1 7.6 61 22-86 6-66 (70)
12 2dmq_A LIM/homeobox protein LH 99.6 7.9E-16 2.7E-20 132.4 8.6 61 22-86 6-66 (80)
13 2h1k_A IPF-1, pancreatic and d 99.6 4.5E-16 1.5E-20 128.2 6.5 60 23-86 3-62 (63)
14 2dms_A Homeobox protein OTX2; 99.6 5.7E-16 1.9E-20 133.5 7.4 61 22-86 6-66 (80)
15 2da2_A Alpha-fetoprotein enhan 99.6 5.9E-16 2E-20 129.9 6.9 61 22-86 6-66 (70)
16 1ig7_A Homeotic protein MSX-1; 99.6 8.4E-16 2.9E-20 124.3 7.3 57 24-84 1-57 (58)
17 3a01_A Homeodomain-containing 99.6 9.2E-16 3.1E-20 136.2 8.0 62 22-87 16-77 (93)
18 2vi6_A Homeobox protein nanog; 99.6 2.5E-16 8.5E-21 129.3 4.0 60 23-86 3-62 (62)
19 2da1_A Alpha-fetoprotein enhan 99.6 7.9E-16 2.7E-20 129.2 6.7 61 22-86 6-66 (70)
20 1ahd_P Antennapedia protein mu 99.6 7.1E-16 2.4E-20 129.1 6.4 60 23-86 2-61 (68)
21 1puf_A HOX-1.7, homeobox prote 99.6 2E-15 6.8E-20 129.3 9.2 62 22-87 12-73 (77)
22 2djn_A Homeobox protein DLX-5; 99.6 6E-16 2.1E-20 130.1 5.8 60 22-85 6-65 (70)
23 2hdd_A Protein (engrailed home 99.6 7.4E-16 2.5E-20 126.1 6.2 58 23-84 3-60 (61)
24 1fjl_A Paired protein; DNA-bin 99.6 1.4E-15 4.6E-20 131.4 7.9 63 21-87 16-78 (81)
25 1uhs_A HOP, homeodomain only p 99.6 1.8E-15 6E-20 127.9 7.4 59 24-86 2-61 (72)
26 1yz8_P Pituitary homeobox 2; D 99.6 8.2E-16 2.8E-20 128.5 5.3 61 23-87 3-63 (68)
27 1jgg_A Segmentation protein EV 99.6 1.3E-15 4.3E-20 124.3 6.1 58 24-85 2-59 (60)
28 1zq3_P PRD-4, homeotic bicoid 99.6 2.3E-15 7.8E-20 125.9 7.6 60 23-86 2-61 (68)
29 1ftt_A TTF-1 HD, thyroid trans 99.6 2E-15 6.9E-20 126.3 6.9 60 23-86 2-61 (68)
30 2l7z_A Homeobox protein HOX-A1 99.6 1.8E-15 6.3E-20 128.3 6.7 60 22-85 6-65 (73)
31 2hi3_A Homeodomain-only protei 99.6 2.6E-15 8.8E-20 127.3 7.4 60 23-86 2-62 (73)
32 2da4_A Hypothetical protein DK 99.6 1.6E-15 5.5E-20 130.6 5.8 61 22-86 7-71 (80)
33 3a02_A Homeobox protein arista 99.6 1.5E-15 5.1E-20 123.9 5.3 57 26-86 2-58 (60)
34 2da5_A Zinc fingers and homeob 99.6 2.2E-15 7.6E-20 128.5 6.5 58 25-86 9-66 (75)
35 3rkq_A Homeobox protein NKX-2. 99.6 2.3E-15 7.9E-20 121.2 6.2 56 24-83 3-58 (58)
36 1bw5_A ISL-1HD, insulin gene e 99.6 1.8E-15 6E-20 125.7 5.2 60 23-86 3-62 (66)
37 1b8i_A Ultrabithorax, protein 99.6 1.9E-15 6.5E-20 130.8 5.5 61 22-86 19-79 (81)
38 3a03_A T-cell leukemia homeobo 99.6 3.1E-15 1E-19 120.6 6.3 54 28-85 2-55 (56)
39 2k40_A Homeobox expressed in E 99.6 3.4E-15 1.2E-19 124.4 6.7 59 24-86 2-60 (67)
40 2m0c_A Homeobox protein arista 99.6 3.7E-15 1.3E-19 126.3 7.0 61 22-86 8-68 (75)
41 2r5y_A Homeotic protein sex co 99.6 2.8E-15 9.7E-20 131.5 6.2 60 22-85 27-86 (88)
42 1akh_A Protein (mating-type pr 99.6 2.2E-15 7.6E-20 123.0 5.0 58 22-83 4-61 (61)
43 2ecc_A Homeobox and leucine zi 99.6 5.4E-15 1.8E-19 126.9 7.6 58 25-86 5-62 (76)
44 2cuf_A FLJ21616 protein; homeo 99.6 5E-15 1.7E-19 131.8 7.5 63 21-87 5-82 (95)
45 3nar_A ZHX1, zinc fingers and 99.5 3.4E-15 1.2E-19 133.1 5.3 61 22-86 24-84 (96)
46 1x2n_A Homeobox protein pknox1 99.5 1.2E-14 4.2E-19 122.9 7.8 61 22-86 6-69 (73)
47 1b72_A Protein (homeobox prote 99.5 8.5E-15 2.9E-19 130.7 6.9 62 22-87 33-94 (97)
48 2ly9_A Zinc fingers and homeob 99.5 5.7E-15 2E-19 125.2 5.4 59 24-86 7-65 (74)
49 2ecb_A Zinc fingers and homeob 99.5 1E-14 3.4E-19 128.8 7.1 59 25-87 13-71 (89)
50 2dmp_A Zinc fingers and homeob 99.5 1.7E-14 5.9E-19 127.0 8.2 58 25-86 15-72 (89)
51 2dn0_A Zinc fingers and homeob 99.5 7.8E-15 2.7E-19 125.3 5.7 59 24-86 9-67 (76)
52 1k61_A Mating-type protein alp 99.5 1.4E-14 4.7E-19 118.1 6.2 55 26-84 1-58 (60)
53 2cqx_A LAG1 longevity assuranc 99.5 6.5E-15 2.2E-19 125.0 3.8 58 23-84 8-66 (72)
54 1puf_B PRE-B-cell leukemia tra 99.5 2.6E-14 9E-19 120.9 7.1 59 24-86 2-63 (73)
55 1b72_B Protein (PBX1); homeodo 99.5 2.7E-14 9.2E-19 124.7 6.9 59 24-86 2-63 (87)
56 1du6_A PBX1, homeobox protein 99.5 1.2E-14 4E-19 119.9 4.0 58 23-84 3-63 (64)
57 2dmn_A Homeobox protein TGIF2L 99.5 5.1E-14 1.8E-18 122.4 7.6 61 22-86 6-69 (83)
58 1au7_A Protein PIT-1, GHF-1; c 99.5 1.7E-14 5.9E-19 138.0 4.8 62 20-85 84-145 (146)
59 1e3o_C Octamer-binding transcr 99.5 2.5E-14 8.5E-19 138.8 5.7 61 21-85 99-159 (160)
60 1mnm_C Protein (MAT alpha-2 tr 99.5 4.7E-14 1.6E-18 123.4 6.5 59 22-84 26-87 (87)
61 1le8_B Mating-type protein alp 99.5 4.2E-14 1.4E-18 122.9 5.9 59 24-86 3-64 (83)
62 2l9r_A Homeobox protein NKX-3. 99.4 2.9E-14 1E-18 120.2 3.9 55 28-86 9-63 (69)
63 3nau_A Zinc fingers and homeob 99.4 7.2E-14 2.5E-18 116.5 6.0 53 30-86 11-63 (66)
64 1wi3_A DNA-binding protein SAT 99.4 1.2E-13 4E-18 115.4 6.9 57 22-82 6-63 (71)
65 1lfb_A Liver transcription fac 99.4 2.9E-14 1E-18 128.2 3.5 63 21-87 7-90 (99)
66 3d1n_I POU domain, class 6, tr 99.4 8.4E-14 2.9E-18 133.7 6.7 60 21-84 91-150 (151)
67 2xsd_C POU domain, class 3, tr 99.4 6.3E-14 2.1E-18 136.7 5.2 62 21-86 97-158 (164)
68 2da6_A Hepatocyte nuclear fact 99.4 2.1E-13 7.2E-18 123.0 7.6 67 22-88 5-88 (102)
69 2e19_A Transcription factor 8; 99.4 9E-14 3.1E-18 115.4 4.5 54 27-84 7-60 (64)
70 1x2m_A LAG1 longevity assuranc 99.4 8.5E-14 2.9E-18 115.7 3.5 49 32-84 9-58 (64)
71 3l1p_A POU domain, class 5, tr 99.4 2E-13 6.8E-18 131.8 6.3 59 22-84 95-153 (155)
72 1em2_A MLN64 protein; beta bar 99.4 4E-12 1.4E-16 128.3 13.4 197 170-384 21-226 (229)
73 2pso_A STAR-related lipid tran 99.4 9.8E-13 3.4E-17 134.7 8.4 174 175-363 33-210 (237)
74 2d5v_A Hepatocyte nuclear fact 99.3 3.4E-13 1.2E-17 130.9 4.2 61 22-86 96-156 (164)
75 3p0l_A Steroidogenic acute reg 99.3 5.8E-12 2E-16 126.6 12.9 195 171-382 11-213 (221)
76 3k2a_A Homeobox protein MEIS2; 99.3 1.6E-12 5.5E-17 108.6 5.8 54 29-86 4-60 (67)
77 1ic8_A Hepatocyte nuclear fact 99.2 2E-12 6.7E-17 129.3 2.1 61 20-84 112-193 (194)
78 2lk2_A Homeobox protein TGIF1; 99.1 1.2E-10 3.9E-15 102.8 7.0 56 27-86 9-67 (89)
79 2da7_A Zinc finger homeobox pr 99.0 1.9E-10 6.6E-15 96.6 5.1 46 32-81 14-59 (71)
80 2h8r_A Hepatocyte nuclear fact 99.0 1.5E-10 5.1E-15 117.3 5.1 63 20-82 139-218 (221)
81 1ln1_A PC-TP, phosphatidylchol 99.0 6.1E-10 2.1E-14 110.4 8.1 150 219-383 52-209 (214)
82 3fo5_A Thioesterase, adipose a 99.0 4.9E-10 1.7E-14 116.5 6.7 126 221-358 90-222 (258)
83 1jss_A Stard4, cholesterol-reg 98.9 9.8E-09 3.4E-13 103.5 15.1 189 172-382 26-222 (224)
84 1mh3_A Maltose binding-A1 home 98.9 3.4E-10 1.2E-14 122.0 3.3 56 24-83 366-421 (421)
85 2e3n_A Lipid-transfer protein 98.5 3.2E-07 1.1E-11 93.9 10.4 195 171-382 23-245 (255)
86 3qsz_A STAR-related lipid tran 98.4 4.6E-07 1.6E-11 88.3 9.3 126 219-357 27-155 (189)
87 2nzz_A Penetratin conjugated G 98.3 5.3E-08 1.8E-12 72.4 -0.4 20 69-88 1-20 (37)
88 2r55_A STAR-related lipid tran 96.6 0.099 3.4E-06 52.1 18.0 149 401-606 22-181 (231)
89 1jss_A Stard4, cholesterol-reg 94.8 0.5 1.7E-05 47.0 14.6 129 423-606 42-176 (224)
90 2pso_A STAR-related lipid tran 94.6 0.84 2.9E-05 46.2 15.9 173 422-689 48-227 (237)
91 3p0l_A Steroidogenic acute reg 94.0 1.7 5.9E-05 42.9 16.5 192 403-688 12-213 (221)
92 3fo5_A Thioesterase, adipose a 93.6 0.78 2.7E-05 47.4 13.6 150 396-606 43-201 (258)
93 3qsz_A STAR-related lipid tran 93.5 1.7 6E-05 41.4 15.1 54 424-497 3-58 (189)
94 1ln1_A PC-TP, phosphatidylchol 93.3 1.5 5E-05 42.7 14.3 68 411-497 13-84 (214)
95 1em2_A MLN64 protein; beta bar 92.5 4.2 0.00014 40.2 16.6 129 423-606 41-178 (229)
96 2d4r_A Hypothetical protein TT 92.0 0.91 3.1E-05 39.9 10.0 140 223-385 6-146 (147)
97 1hjb_A Ccaat/enhancer binding 90.5 0.6 2.1E-05 40.9 6.9 48 78-132 28-75 (87)
98 2ys9_A Homeobox and leucine zi 89.2 0.37 1.3E-05 40.5 4.3 39 35-77 18-56 (70)
99 1gu4_A CAAT/enhancer binding p 88.7 1 3.6E-05 38.5 6.9 46 78-130 28-73 (78)
100 1ci6_A Transcription factor AT 87.9 1.4 4.8E-05 36.1 6.9 45 79-130 16-60 (63)
101 2wt7_A Proto-oncogene protein 86.1 2 6.8E-05 35.0 6.9 45 79-130 16-60 (63)
102 1t2k_D Cyclic-AMP-dependent tr 85.6 2.5 8.6E-05 34.1 7.2 45 79-130 15-59 (61)
103 1t2k_D Cyclic-AMP-dependent tr 84.3 5.1 0.00017 32.3 8.5 32 102-133 24-55 (61)
104 1gd2_E Transcription factor PA 80.1 3.4 0.00011 34.7 6.0 46 81-126 24-69 (70)
105 1jnm_A Proto-oncogene C-JUN; B 78.9 2.8 9.5E-05 34.0 5.1 45 79-130 15-59 (62)
106 3tfz_A Cyclase; helix-GRIP, BE 76.9 9.8 0.00034 35.8 9.1 121 222-363 8-129 (172)
107 2wt7_B Transcription factor MA 76.5 10 0.00034 33.3 8.2 66 64-133 16-81 (90)
108 2jee_A YIIU; FTSZ, septum, coi 76.3 8.4 0.00029 33.2 7.4 43 89-131 23-65 (81)
109 2dgc_A Protein (GCN4); basic d 74.0 4.9 0.00017 32.9 5.2 21 112-132 35-55 (63)
110 1ci6_A Transcription factor AT 73.3 14 0.00049 30.0 7.9 31 103-133 26-56 (63)
111 3s9g_A Protein hexim1; cyclin 73.0 10 0.00034 33.8 7.2 42 91-132 49-90 (104)
112 1jnm_A Proto-oncogene C-JUN; B 72.8 7.8 0.00027 31.3 6.2 24 109-132 24-47 (62)
113 2wt7_A Proto-oncogene protein 71.7 21 0.00073 28.9 8.6 24 109-132 25-48 (63)
114 1hjb_A Ccaat/enhancer binding 67.2 28 0.00095 30.3 8.8 39 99-137 35-73 (87)
115 2oqq_A Transcription factor HY 66.8 14 0.00049 27.9 5.8 35 97-131 7-41 (42)
116 2jn6_A Protein CGL2762, transp 66.7 2.4 8.1E-05 36.4 1.9 42 28-76 4-45 (97)
117 1t17_A Conserved hypothetical 66.1 14 0.00048 33.4 7.3 136 222-383 5-144 (148)
118 2e3n_A Lipid-transfer protein 65.6 5.7 0.00019 40.0 4.8 58 422-497 45-105 (255)
119 2w6a_A ARF GTPase-activating p 65.4 16 0.00054 29.7 6.3 32 97-128 31-62 (63)
120 3p9v_A Uncharacterized protein 63.7 26 0.00088 32.6 8.7 142 222-384 10-152 (161)
121 3he5_B Synzip2; heterodimeric 62.8 21 0.00071 27.2 6.1 38 96-133 6-43 (52)
122 2j5u_A MREC protein; bacterial 61.4 5.1 0.00017 41.2 3.6 38 91-132 24-61 (255)
123 1gu4_A CAAT/enhancer binding p 61.0 33 0.0011 29.2 8.0 34 103-136 39-72 (78)
124 3m91_A Proteasome-associated A 61.0 25 0.00085 27.7 6.6 37 97-133 13-49 (51)
125 3tvq_A Multifunctional cyclase 59.5 1.1E+02 0.0037 28.9 12.4 38 222-259 6-43 (169)
126 1dh3_A Transcription factor CR 58.5 8.9 0.00031 30.5 3.7 26 109-134 24-49 (55)
127 2yy0_A C-MYC-binding protein; 57.5 16 0.00056 28.8 5.1 32 100-131 19-50 (53)
128 3tl1_A WHIE ORF VI, polyketide 56.4 62 0.0021 30.3 10.0 111 222-353 6-117 (159)
129 3hnw_A Uncharacterized protein 55.3 48 0.0017 31.0 8.8 42 92-133 88-129 (138)
130 2glo_A Brinker CG9653-PA; prot 53.0 18 0.00061 28.1 4.7 45 27-76 3-47 (59)
131 1dh3_A Transcription factor CR 52.2 52 0.0018 26.0 7.2 33 79-111 15-47 (55)
132 1t6f_A Geminin; coiled-coil, c 49.8 23 0.0008 25.9 4.3 27 101-127 8-34 (37)
133 1go4_E MAD1 (mitotic arrest de 49.0 51 0.0018 29.4 7.4 20 113-132 74-93 (100)
134 1a93_B MAX protein, coiled coi 47.7 28 0.00095 25.3 4.4 27 105-131 5-31 (34)
135 3m48_A General control protein 43.5 20 0.00067 25.9 3.0 28 110-137 3-30 (33)
136 3m9b_A Proteasome-associated A 43.0 25 0.00086 36.2 5.1 33 101-133 62-94 (251)
137 2wt7_B Transcription factor MA 42.5 1.2E+02 0.0041 26.5 8.6 47 80-133 42-88 (90)
138 3a5t_A Transcription factor MA 42.4 7.2 0.00024 35.3 0.9 65 65-133 27-91 (107)
139 2jee_A YIIU; FTSZ, septum, coi 41.9 96 0.0033 26.7 7.7 47 86-132 27-73 (81)
140 2oa5_A Hypothetical protein BQ 41.2 17 0.00058 33.0 3.1 24 109-132 10-33 (110)
141 1jko_C HIN recombinase, DNA-in 40.8 22 0.00074 25.7 3.3 42 29-79 5-46 (52)
142 1hlv_A CENP-B, major centromer 40.5 39 0.0013 29.9 5.5 50 25-81 3-52 (131)
143 1gd2_E Transcription factor PA 39.9 94 0.0032 25.9 7.2 27 104-130 40-66 (70)
144 1deb_A APC protein, adenomatou 39.8 20 0.00068 28.2 2.9 35 97-131 14-48 (54)
145 3a2a_A Voltage-gated hydrogen 39.6 42 0.0014 26.9 4.7 34 103-136 14-47 (58)
146 1s7o_A Hypothetical UPF0122 pr 38.0 1.3E+02 0.0044 26.7 8.5 48 28-84 21-68 (113)
147 3he5_B Synzip2; heterodimeric 38.0 1.3E+02 0.0045 22.8 7.2 34 97-130 14-47 (52)
148 1dip_A Delta-sleep-inducing pe 38.0 36 0.0012 28.8 4.4 31 100-130 15-45 (78)
149 3mq7_A Bone marrow stromal ant 37.9 1.5E+02 0.0051 27.2 8.7 33 97-129 75-107 (121)
150 3oja_B Anopheles plasmodium-re 37.9 2.1E+02 0.0072 31.7 12.2 35 104-138 548-582 (597)
151 1uii_A Geminin; human, DNA rep 37.2 77 0.0026 27.4 6.4 28 101-128 47-74 (83)
152 3gpv_A Transcriptional regulat 37.2 1.6E+02 0.0056 27.2 9.4 37 25-78 50-86 (148)
153 3m9b_A Proteasome-associated A 35.8 31 0.0011 35.6 4.4 38 91-128 59-96 (251)
154 1nkp_B MAX protein, MYC proto- 35.2 43 0.0015 28.2 4.6 31 103-133 50-80 (83)
155 1tc3_C Protein (TC3 transposas 34.6 49 0.0017 23.2 4.3 41 28-77 4-44 (51)
156 2oxj_A Hybrid alpha/beta pepti 33.9 36 0.0012 24.6 3.2 27 110-136 4-30 (34)
157 3mq7_A Bone marrow stromal ant 33.7 1.1E+02 0.0039 27.9 7.2 28 104-131 75-102 (121)
158 1xsv_A Hypothetical UPF0122 pr 33.6 2E+02 0.0069 25.2 9.1 48 28-84 24-71 (113)
159 2elh_A CG11849-PA, LD40883P; s 32.3 49 0.0017 27.7 4.5 43 25-76 18-60 (87)
160 1nlw_A MAD protein, MAX dimeri 32.0 79 0.0027 26.8 5.7 31 102-132 49-79 (80)
161 3s9g_A Protein hexim1; cyclin 31.7 2.8E+02 0.0095 24.7 9.6 43 87-129 52-94 (104)
162 3hnw_A Uncharacterized protein 31.5 1.7E+02 0.0059 27.2 8.5 46 86-131 89-134 (138)
163 1wlq_A Geminin; coiled-coil; 2 31.3 1.1E+02 0.0038 26.4 6.4 28 101-128 39-66 (83)
164 3he5_A Synzip1; heterodimeric 29.7 1.8E+02 0.0061 21.9 6.5 40 91-130 8-47 (49)
165 1deb_A APC protein, adenomatou 29.5 2.1E+02 0.0071 22.5 7.1 24 110-133 6-29 (54)
166 2x7l_M HIV REV; nuclear export 29.0 60 0.0021 29.5 4.6 36 35-88 15-50 (115)
167 2zxx_A Geminin; coiled-coil, c 28.8 1.4E+02 0.0046 25.6 6.5 34 100-133 34-67 (79)
168 3m91_A Proteasome-associated A 28.3 2E+02 0.0067 22.6 6.9 36 91-126 14-49 (51)
169 2bni_A General control protein 27.6 58 0.002 23.6 3.4 28 109-136 3-30 (34)
170 4dzn_A Coiled-coil peptide CC- 26.9 1.3E+02 0.0045 21.0 4.9 28 103-130 5-32 (33)
171 3c3f_A Alpha/beta peptide with 26.8 56 0.0019 23.6 3.2 26 110-135 4-29 (34)
172 3c3g_A Alpha/beta peptide with 26.5 75 0.0026 22.8 3.7 26 111-136 4-29 (33)
173 2dgc_A Protein (GCN4); basic d 26.5 2.5E+02 0.0084 22.7 7.5 30 78-107 22-51 (63)
174 1nkp_A C-MYC, MYC proto-oncoge 26.3 81 0.0028 27.1 4.9 31 103-133 55-85 (88)
175 3lph_A Protein REV; helix-loop 26.0 61 0.0021 27.2 3.8 36 35-88 18-53 (72)
176 3hug_A RNA polymerase sigma fa 25.9 1.1E+02 0.0037 25.6 5.6 47 29-84 37-83 (92)
177 1wlq_A Geminin; coiled-coil; 2 25.7 2E+02 0.0069 24.8 7.0 27 107-133 38-64 (83)
178 1uii_A Geminin; human, DNA rep 24.9 2.7E+02 0.0094 24.0 7.7 32 105-136 44-75 (83)
179 1uo4_A General control protein 23.7 78 0.0027 22.9 3.4 27 110-136 4-30 (34)
180 1t6f_A Geminin; coiled-coil, c 23.6 1.2E+02 0.0041 22.3 4.4 28 106-133 6-33 (37)
181 3nmd_A CGMP dependent protein 23.1 2.7E+02 0.0093 23.4 7.2 27 109-135 42-68 (72)
182 3w03_C DNA repair protein XRCC 23.0 1.2E+02 0.0042 29.8 6.0 33 101-133 146-178 (184)
183 2o8x_A Probable RNA polymerase 22.4 82 0.0028 24.3 3.9 47 29-84 15-61 (70)
184 2wvr_A Geminin; DNA replicatio 22.1 2.2E+02 0.0075 28.4 7.6 34 100-133 115-148 (209)
185 1fmh_A General control protein 22.1 84 0.0029 21.9 3.2 23 111-133 5-27 (33)
186 2w83_C C-JUN-amino-terminal ki 22.0 3.4E+02 0.012 23.1 7.6 42 91-132 14-55 (77)
187 3oja_A Leucine-rich immune mol 21.5 1.8E+02 0.0061 31.6 7.7 29 105-133 433-461 (487)
188 2pcs_A Conserved protein; stru 21.2 4.4E+02 0.015 23.4 10.7 118 224-363 8-127 (162)
189 3q0x_A Centriole protein; cent 21.1 2.6E+02 0.0088 28.3 8.1 58 67-133 161-218 (228)
190 2cqr_A RSGI RUH-043, DNAJ homo 20.5 3.3E+02 0.011 22.5 7.4 50 24-76 15-64 (73)
191 2yy0_A C-MYC-binding protein; 20.4 1.2E+02 0.0041 23.8 4.4 25 96-120 22-46 (53)
192 3vmx_A Voltage-gated hydrogen 20.3 1.5E+02 0.0051 23.1 4.7 30 105-134 9-38 (48)
193 2v4h_A NF-kappa-B essential mo 20.3 4.2E+02 0.014 24.0 8.3 45 89-133 65-109 (110)
194 1p4w_A RCSB; solution structur 20.1 1.4E+02 0.0049 25.8 5.3 46 27-82 32-77 (99)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=183.48 Aligned_cols=198 Identities=21% Similarity=0.261 Sum_probs=159.7
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEEeeChhHHHHHhcC-----cc
Q 004776 169 PAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKD-----RP 242 (731)
Q Consensus 169 ~~~l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD-----~~ 242 (731)
+..+.++|++||+|++++++.+ ..|..... +.| +.++-. ..+..+.+-|..|+|.+.+.+|++.||+ +.
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~ 95 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRV 95 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-CCC---EEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhh
Confidence 5679999999999999999754 68987532 222 222211 1244568889999999999999999977 89
Q ss_pred hhhhhCCcceEeeeccCCCcchHHHHHHHhh--ccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCcc
Q 004776 243 SWYRDCRSVEVVNVLPTGSSGTIELLYMQLY--APTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHF 320 (731)
Q Consensus 243 ~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~--v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~ 320 (731)
+|-..|...++|+.+... .. ++| ++. .++++|++|||.++||+++.++|.|+|+.+|++. +..|+...+
T Consensus 96 ~Wd~~~~~~~vle~i~~~--~~--i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~ 166 (231)
T 2r55_A 96 KWDENVTGFEIIQSITDT--LC--VSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGF 166 (231)
T ss_dssp HHCTTCSEEEEEEECSSS--EE--EEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTC
T ss_pred hhccccceeEEEEEcCCC--EE--EEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCC
Confidence 999999999999988632 11 222 232 3456899999999999999999999999999984 345566789
Q ss_pred ccccccCCcceEeecC--CCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHhhh
Q 004776 321 VRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 384 (731)
Q Consensus 321 ~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e~l 384 (731)
+|++.++|||+||+++ +|.|+|||+.|+|..-+ +| +.++++.+..+...|++.|| +|+.+
T Consensus 167 VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 167 VRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp EEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 9999999999999998 78999999999998876 55 68888888999999999996 88764
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=140.99 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=59.7
Q ss_pred CccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 18 QKMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 18 ~~~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
...+..+|+|+.||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+..
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhccc
Confidence 3344567889999999999999999999999999999999999 9999999999999999999843
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=140.39 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=58.8
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
....+|+|++||.+|+..||..|..++||+..++.+||.+| ||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 34557889999999999999999999999999999999999 9999999999999999999854
No 4
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=5.8e-17 Score=140.28 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=57.0
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHE----CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~----~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+.+|+|+.||.+|+..||..|+. ++||+...|.+||.+| ||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 3456788999999999999999999 9999999999999999 99999999999999999874
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=5e-16 Score=133.93 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=58.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
..+|+|+.||.+|+..||..|..++||+..++.+||.+| ||+++||++||||||+|+|+++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 346889999999999999999999999999999999999 999999999999999999986543
No 6
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.64 E-value=1.5e-16 Score=137.86 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=55.6
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHE-----CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~-----~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+++|+|+.||.+|+..|| .|.+ ++||+...|.+||.+| ||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 34567889999999999999 7999 9999999999999999 99999999999999999874
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=135.03 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=59.8
Q ss_pred CccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 18 QKMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 18 ~~~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
......+|+|+.||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHh
Confidence 3344667889999999999999999999999999999999999 9999999999999999999854
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.62 E-value=8.3e-16 Score=131.64 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=58.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
..+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhc
Confidence 456789999999999999999999999999999999999 99999999999999999998553
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=3.2e-16 Score=131.80 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+++|++||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccC
Confidence 457889999999999999999999999999999999999 9999999999999999999843
No 10
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=6.2e-16 Score=129.98 Aligned_cols=60 Identities=28% Similarity=0.511 Sum_probs=56.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCC
Confidence 35788999999999999999999999999999999999 9999999999999999999854
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=130.08 Aligned_cols=61 Identities=33% Similarity=0.589 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccC
Confidence 346889999999999999999999999999999999999 9999999999999999999854
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=132.38 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=57.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999 9999999999999999999865
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.61 E-value=4.5e-16 Score=128.25 Aligned_cols=60 Identities=32% Similarity=0.437 Sum_probs=56.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+|+|+.||.+|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 46889999999999999999999999999999999999 9999999999999999999853
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.7e-16 Score=133.50 Aligned_cols=61 Identities=25% Similarity=0.531 Sum_probs=57.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHH
Confidence 457889999999999999999999999999999999999 9999999999999999999854
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=5.9e-16 Score=129.93 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=57.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcc
Confidence 456889999999999999999999999999999999999 9999999999999999999854
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=8.4e-16 Score=124.30 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=55.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
+|+|+.||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 4778999999999999999999999999999999999 99999999999999999986
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.61 E-value=9.2e-16 Score=136.21 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=58.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
..+++|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhH
Confidence 456889999999999999999999999999999999999 99999999999999999998653
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.61 E-value=2.5e-16 Score=129.32 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=53.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+++|+.||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 46889999999999999999999999999999999999 9999999999999999999853
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=7.9e-16 Score=129.16 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhc
Confidence 456889999999999999999999999999999999999 9999999999999999999853
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=7.1e-16 Score=129.11 Aligned_cols=60 Identities=30% Similarity=0.436 Sum_probs=57.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++|+|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhc
Confidence 57889999999999999999999999999999999999 9999999999999999999854
No 21
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.60 E-value=2e-15 Score=129.29 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
..+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhh
Confidence 446889999999999999999999999999999999999 99999999999999999998553
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6e-16 Score=130.09 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=57.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
..+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhccc
Confidence 447889999999999999999999999999999999999 999999999999999999874
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.60 E-value=7.4e-16 Score=126.08 Aligned_cols=58 Identities=33% Similarity=0.564 Sum_probs=53.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
.+|+|+.||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 46889999999999999999999999999999999999 99999999999999999987
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.60 E-value=1.4e-15 Score=131.43 Aligned_cols=63 Identities=27% Similarity=0.547 Sum_probs=58.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
++.+|+|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 3557889999999999999999999999999999999999 99999999999999999998653
No 25
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=127.91 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHE-CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 577899999999999999996 9999999999999999 9999999999999999999865
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.58 E-value=8.2e-16 Score=128.54 Aligned_cols=61 Identities=25% Similarity=0.531 Sum_probs=57.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
.+++|+.||++|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|+++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhh
Confidence 46889999999999999999999999999999999999 99999999999999999998654
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.58 E-value=1.3e-15 Score=124.31 Aligned_cols=58 Identities=33% Similarity=0.497 Sum_probs=55.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
+|+|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 4778999999999999999999999999999999999 999999999999999999973
No 28
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.58 E-value=2.3e-15 Score=125.94 Aligned_cols=60 Identities=25% Similarity=0.420 Sum_probs=57.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+++|+.||.+|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHh
Confidence 36789999999999999999999999999999999999 9999999999999999999854
No 29
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=2e-15 Score=126.25 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++++|+.||++|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhh
Confidence 56889999999999999999999999999999999999 9999999999999999999854
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.57 E-value=1.8e-15 Score=128.28 Aligned_cols=60 Identities=33% Similarity=0.532 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
.++++|++||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHH
Confidence 457889999999999999999999999999999999999 999999999999999999984
No 31
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=2.6e-15 Score=127.31 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=56.5
Q ss_pred CCCCcccCCHHHHHHHHHhHh-cCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYH-ECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~-~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+++|++||.+|+..||..|. .++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999 49999999999999999 9999999999999999999865
No 32
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=130.64 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHEC----PKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~----~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|+.||.+|+..||..|+.+ +||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhcc
Confidence 456889999999999999999999 999999999999999 9999999999999999999854
No 33
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.57 E-value=1.5e-15 Score=123.86 Aligned_cols=57 Identities=28% Similarity=0.562 Sum_probs=50.6
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 26 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 57899999999999999999999999999999999 9999999999999999999854
No 34
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=128.52 Aligned_cols=58 Identities=29% Similarity=0.530 Sum_probs=55.1
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhh
Confidence 567789999999999999999999999999999999 9999999999999999999854
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=121.24 Aligned_cols=56 Identities=34% Similarity=0.510 Sum_probs=53.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~K 83 (731)
+++|+.||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 5778999999999999999999999999999999999 9999999999999999975
No 36
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.56 E-value=1.8e-15 Score=125.72 Aligned_cols=60 Identities=30% Similarity=0.695 Sum_probs=56.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+|+|+.||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHh
Confidence 46889999999999999999999999999999999999 9999999999999999998743
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.56 E-value=1.9e-15 Score=130.75 Aligned_cols=61 Identities=30% Similarity=0.453 Sum_probs=54.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|+.||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhc
Confidence 456889999999999999999999999999999999999 9999999999999999999853
No 38
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=120.57 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
+.||++|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999 999999999999999999984
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=124.36 Aligned_cols=59 Identities=29% Similarity=0.494 Sum_probs=56.6
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+|+|++||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhc
Confidence 6789999999999999999999999999999999999 9999999999999999999854
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=126.35 Aligned_cols=61 Identities=28% Similarity=0.563 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+++|++||++|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+++
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999 9999999999999999999854
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.55 E-value=2.8e-15 Score=131.45 Aligned_cols=60 Identities=30% Similarity=0.445 Sum_probs=54.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
..+|+|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhh
Confidence 457889999999999999999999999999999999999 999999999999999999984
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.55 E-value=2.2e-15 Score=123.01 Aligned_cols=58 Identities=26% Similarity=0.535 Sum_probs=48.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~K 83 (731)
..+++|++||.+|+..||..|..++||+..++.+||.++ ||++.||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 456889999999999999999999999999999999999 9999999999999999976
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5.4e-15 Score=126.85 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=54.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+|.+||++|+..||+.|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHH
Confidence 456789999999999999999999999999999999 9999999999999999999843
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5e-15 Score=131.75 Aligned_cols=63 Identities=24% Similarity=0.514 Sum_probs=58.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCC---------------CChhhhhhhhhhhhhHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSN---------------IEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------Ls~rQVkvWFQNRRaK~Krk 85 (731)
...+|+|+.||++|+..||..|+.++||+..+|.+||.+| | |++.||++||||||+|+|++
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999 9 99999999999999999986
Q ss_pred HH
Q 004776 86 KE 87 (731)
Q Consensus 86 q~ 87 (731)
+.
T Consensus 81 ~~ 82 (95)
T 2cuf_A 81 AN 82 (95)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.54 E-value=3.4e-15 Score=133.13 Aligned_cols=61 Identities=26% Similarity=0.421 Sum_probs=56.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|++||++|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 446789999999999999999999999999999999999 9999999999999999999854
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.2e-14 Score=122.92 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+++|++|+.+|+..||.+|.+ ++||+..++.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccc
Confidence 34688899999999999999987 9999999999999999 9999999999999999999843
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=8.5e-15 Score=130.73 Aligned_cols=62 Identities=31% Similarity=0.543 Sum_probs=55.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
..+++|+.||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhc
Confidence 456889999999999999999999999999999999999 99999999999999999998653
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=5.7e-15 Score=125.19 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=56.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++.|+.||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhC
Confidence 5788999999999999999999999999999999999 9999999999999999999854
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1e-14 Score=128.85 Aligned_cols=59 Identities=17% Similarity=0.365 Sum_probs=54.8
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~ 87 (731)
+++.+||.+|+..||+.|..++||+...|.+||..| ||+++||++||||||+|+|++++
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHH
Confidence 345599999999999999999999999999999999 99999999999999999998543
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=127.05 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=54.2
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+++.++|.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHh
Confidence 455679999999999999999999999999999999 9999999999999999999744
No 51
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.8e-15 Score=125.28 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhc
Confidence 3458899999999999999999999999999999999 9999999999999999999844
No 52
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.51 E-value=1.4e-14 Score=118.05 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=53.1
Q ss_pred CcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 26 KYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 26 kR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
++++||.+|+..||.+|.. ++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 9999999999999999 99999999999999999986
No 53
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=6.5e-15 Score=125.01 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=54.7
Q ss_pred CCCCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLY-HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
+.+++.+++++|+..||+.| ..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCC
Confidence 45677789999999999999 999999999999999999 99999999999999999986
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.49 E-value=2.6e-14 Score=120.90 Aligned_cols=59 Identities=27% Similarity=0.534 Sum_probs=56.1
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLY---HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+|+|++||.+|+..||.+| ..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccc
Confidence 5788999999999999999 899999999999999999 9999999999999999999844
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.49 E-value=2.7e-14 Score=124.69 Aligned_cols=59 Identities=27% Similarity=0.534 Sum_probs=55.7
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLY---HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+|+|++||.+|+..||.+| ..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcc
Confidence 5788999999999999999 899999999999999999 9999999999999999999854
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=1.2e-14 Score=119.93 Aligned_cols=58 Identities=26% Similarity=0.486 Sum_probs=55.2
Q ss_pred CCCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 23 DNGKYVRYTPEQVEALERLY---HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 23 ~rrkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
++++|++||.+|+..||.+| ..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 36788999999999999999 899999999999999999 99999999999999999886
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.48 E-value=5.1e-14 Score=122.44 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.++++|++|+.+|+..||.+|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHH
Confidence 34678899999999999999988 5999999999999999 9999999999999999998743
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.47 E-value=1.7e-14 Score=138.01 Aligned_cols=62 Identities=34% Similarity=0.476 Sum_probs=55.5
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
..+++|+|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 34557889999999999999999999999999999999999 999999999999999999974
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.47 E-value=2.5e-14 Score=138.77 Aligned_cols=61 Identities=31% Similarity=0.426 Sum_probs=54.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krk 85 (731)
.+++|+|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 3557889999999999999999999999999999999999 999999999999999999974
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.46 E-value=4.7e-14 Score=123.44 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=55.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
.++++|++||.+|+..||.+|.. ++||+..+|.+||.++ ||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 45677899999999999999999 9999999999999999 99999999999999999873
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.46 E-value=4.2e-14 Score=122.88 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=54.4
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++++++||.+|+..||.+|.. ++||+..++.+||.++ ||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 456778999999999999999 9999999999999999 9999999999999999999854
No 62
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=2.9e-14 Score=120.19 Aligned_cols=55 Identities=31% Similarity=0.527 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+.|+..||+.|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhh
Confidence 367999999999999999999999999999999 9999999999999999999854
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.45 E-value=7.2e-14 Score=116.50 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 30 YTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 30 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
-|.+|+..||+.|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999 9999999999999999999754
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=1.2e-13 Score=115.44 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHE-CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCRE 82 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~ 82 (731)
.++|.|+.|+.+|+..|+..|+. ++||+...|.+||.++ ||++++|++||||||--.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 45789999999999999999999 9999999999999999 999999999999999643
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.44 E-value=2.9e-14 Score=128.21 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=53.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHh------------------cCccCC---CChhhhhhhhhhhh
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRE------------------CPILSN---IEPKQIKVWFQNRR 79 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~------------------L~~~~g---Ls~rQVkvWFQNRR 79 (731)
++.+|+|+.||+.|+..||..|..++||+...|.+||.. | | |++.||++||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHHHH
Confidence 345788999999999999999999999999999999999 6 8 99999999999999
Q ss_pred hHHHHHHH
Q 004776 80 CREKQRKE 87 (731)
Q Consensus 80 aK~Krkq~ 87 (731)
+++|+++.
T Consensus 83 ~k~k~k~~ 90 (99)
T 1lfb_A 83 KEEAFRHK 90 (99)
T ss_dssp HTTSCCC-
T ss_pred HHHHHhch
Confidence 99987653
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.44 E-value=8.4e-14 Score=133.74 Aligned_cols=60 Identities=27% Similarity=0.554 Sum_probs=56.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
.+++|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 3457889999999999999999999999999999999999 99999999999999999986
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.43 E-value=6.3e-14 Score=136.65 Aligned_cols=62 Identities=31% Similarity=0.455 Sum_probs=51.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 21 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
++++|+|++||..|+..||+.|..++||+..+|.+||.++ ||+++||++||||||+|+||++
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhcc
Confidence 4557889999999999999999999999999999999999 9999999999999999999854
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=123.01 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=58.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCc-------------cC----CCChhhhhhhhhhhhhHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPI-------------LS----NIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~-------------~~----gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+|+|+.|++.|+..||+.|..++||+...|.+||.+|.. +. ++++.+|++||||||+|+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 45788999999999999999999999999999999999821 11 58899999999999999998
Q ss_pred HHHH
Q 004776 85 RKEA 88 (731)
Q Consensus 85 kq~~ 88 (731)
++..
T Consensus 85 ~~~~ 88 (102)
T 2da6_A 85 RQKL 88 (102)
T ss_dssp HHHH
T ss_pred hhHh
Confidence 6543
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9e-14 Score=115.41 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=50.3
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 27 YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 27 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
+..++.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3456799999999999999999999999999999 99999999999999998765
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=8.5e-14 Score=115.71 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=46.1
Q ss_pred HHHHHHHHHhH-hcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 32 PEQVEALERLY-HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 32 ~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
+.|+.+||+.| ..++||+..+|.+||++| ||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 46899999999 678999999999999999 99999999999999999985
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.40 E-value=2e-13 Score=131.84 Aligned_cols=59 Identities=25% Similarity=0.454 Sum_probs=56.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc----CCChhheeeccccccccccC
Confidence 456789999999999999999999999999999999999 99999999999999999997
No 72
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.36 E-value=4e-12 Score=128.34 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHH-HHhcC---cchhh
Q 004776 170 AGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVA-EILKD---RPSWY 245 (731)
Q Consensus 170 ~~l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LV-e~lmD---~~~W~ 245 (731)
...+.++++|+++++.+... .--|-.....+.|-.++... . .+ .+-.-|..++|...+..+. ++|+| +.+|-
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~-~-~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd 96 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIE-V-PF-HGKTFILKTFLPCPAELVYQEVILQPERMVLWN 96 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEE-E-TT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEe-c-CC-CCceEEEEEEecCCHHHHHHHHHhCccchhhcc
Confidence 35688999999999999863 34697752211222222111 1 11 1123489999999999998 66654 56888
Q ss_pred hhCCcceEeeeccCCCcchHHHHHHHhhcc--ccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccc
Q 004776 246 RDCRSVEVVNVLPTGSSGTIELLYMQLYAP--TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRA 323 (731)
Q Consensus 246 ~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~--SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 323 (731)
..|...++|..+..+.. ++-++..+ .++++.|||.++|+++.. ++.++||-.|++. +..|+...|+|+
T Consensus 97 ~~~~~~~vle~~~~~t~-----I~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~ 166 (229)
T 1em2_A 97 KTVTACQILQRVEDNTL-----ISYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRG 166 (229)
T ss_dssp TTEEEEEEEEEETTTEE-----EEEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEEC
T ss_pred cccceEEEEEecCCCeE-----EEEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEee
Confidence 88888899998875421 23345544 578999999999999987 5679999999974 445666789999
Q ss_pred cccCCcceEeecC--CCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHhhh
Q 004776 324 EMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 384 (731)
Q Consensus 324 ~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e~l 384 (731)
+.+++|++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.--++..|| +|+.+
T Consensus 167 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 167 ENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 67899999999988765 55 57777766666667778886 66654
No 73
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.35 E-value=9.8e-13 Score=134.67 Aligned_cols=174 Identities=24% Similarity=0.306 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec--cCCCccccccceeEEeeChhHHH-HHhcCcchhhhhCCcc
Q 004776 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI--SHGCTGVAARACGLVGLDPTRVA-EILKDRPSWYRDCRSV 251 (731)
Q Consensus 175 lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~--~~~~~~EASR~~glV~m~~~~LV-e~lmD~~~W~~~f~~~ 251 (731)
++++++.|+++.+.....-|-.... +.| +.++-. +.+...-.=|..++|...+.+++ ++|.|+.+|-..|...
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~-~~g---i~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~~ 108 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSS-TDN---TDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQW 108 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECC-SSS---CEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCCC
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEec-CCC---eEEEEEEcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhhceE
Confidence 4467788888776544456977532 222 222211 23334455688888888787764 7899999999999999
Q ss_pred eEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeee-eCCCeEEEEEeecCCCCCCCCCCCCCccccccccCCcc
Q 004776 252 EVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (731)
Q Consensus 252 ~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 330 (731)
++|+.+... -.++|..+..|.| +++|||.++||.++ +++|.++||-.|++. +..|+. .|+|+..+++|+
T Consensus 109 ~vle~id~~----~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g~ 178 (237)
T 2pso_A 109 KVVETLDRQ----TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQY 178 (237)
T ss_dssp EEEEEEETT----EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEEE
T ss_pred EEEEEcCCC----cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEeccEE
Confidence 999988742 1345555555555 79999999999985 789999999999984 334555 899999999999
Q ss_pred eEeecCCCccEEEEEEeeeccCCCccccchhhh
Q 004776 331 LIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 363 (731)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~ 363 (731)
+|+++++|.|+|||+-|++.. ..+|.-+..++
T Consensus 179 ~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~ 210 (237)
T 2pso_A 179 LIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGF 210 (237)
T ss_dssp EEEECSTTCEEEEEEEEECCS-SSCTTTTTTHH
T ss_pred EEEECCCCCEEEEEEEEeCCC-CCchHHHHHHH
Confidence 999999999999999999987 45776654433
No 74
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.34 E-value=3.4e-13 Score=130.93 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=54.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 22 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
..+|+|+.||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccC
Confidence 457889999999999999999999999999999999999 9999999999999999998743
No 75
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.34 E-value=5.8e-12 Score=126.64 Aligned_cols=195 Identities=20% Similarity=0.283 Sum_probs=142.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeeccCCCccccccceeEEeeChhHHHHHhc-C---cchhhh
Q 004776 171 GLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILK-D---RPSWYR 246 (731)
Q Consensus 171 ~l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lm-D---~~~W~~ 246 (731)
-...+|++||++++.+.. ++.-|-.....+.|-.++... . .+. +-.=|..++|...+.++.+.|+ | +.+|-.
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~vy~~~-~-~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~ 86 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDKVMSKV-V-PDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEWNP 86 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCEEEEEE-C-SSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcEEEEEE-c-CCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhcCc
Confidence 357899999999999976 345698752112232222111 1 122 3456999999999999999984 5 678999
Q ss_pred hCCcceEeeeccCCCcchHHHHHHHh-hccccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCccccccc
Q 004776 247 DCRSVEVVNVLPTGSSGTIELLYMQL-YAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (731)
Q Consensus 247 ~f~~~~~l~~~~~g~~G~lqLm~aE~-~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~r 325 (731)
.|...++|+.+..+ + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|++. +..|+...|+|+..
T Consensus 87 ~~~~~~vle~~~~~---t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~ 157 (221)
T 3p0l_A 87 NVKEIKVLQKIGKD---T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEH 157 (221)
T ss_dssp TCSEEEEEEECSSS---E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEE
T ss_pred chheEEEEEecCCC---e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 99999999988753 2 2333211 123468999999999999985 6899999999873 34456678999999
Q ss_pred cCCcceEeecCCC--ccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHh
Q 004776 326 LPSGYLIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (731)
Q Consensus 326 lPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e 382 (731)
+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.--++..|| +|+
T Consensus 158 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 158 GPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 999999999998766 55 45566666556666778886 555
No 76
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=1.6e-12 Score=108.64 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 29 RYTPEQVEALERLYH---ECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~---~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
+|+.+|+..||.+|. .+|||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHH
Confidence 799999999999999 99999999999999999 9999999999999999999843
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.22 E-value=2e-12 Score=129.29 Aligned_cols=61 Identities=26% Similarity=0.486 Sum_probs=53.5
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCC---------------------CChhhhhhhhhhh
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSN---------------------IEPKQIKVWFQNR 78 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------------Ls~rQVkvWFQNR 78 (731)
.++.+|+|+.|++.|+..||+.|..++||+...|.+||..| | |++.||++|||||
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhh
Confidence 34567889999999999999999999999999999999999 8 9999999999999
Q ss_pred hhHHHH
Q 004776 79 RCREKQ 84 (731)
Q Consensus 79 RaK~Kr 84 (731)
|+|+|.
T Consensus 188 R~~~k~ 193 (194)
T 1ic8_A 188 RKEEAF 193 (194)
T ss_dssp HHHCC-
T ss_pred hhhhhc
Confidence 998775
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=102.77 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=52.1
Q ss_pred cccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHH
Q 004776 27 YVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (731)
Q Consensus 27 R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq 86 (731)
.+.|+++++..|+.+|.+ +|||+..+|.+||.++ ||+++||++||||||.|+|+..
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHH
Confidence 357899999999999988 8999999999999999 9999999999999999998743
No 79
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=96.65 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhH
Q 004776 32 PEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (731)
Q Consensus 32 ~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK 81 (731)
.+|+..||..|..+++|+..++.+||..+ ||+.+.||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57999999999999999999999999999 99999999999999974
No 80
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=117.34 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=52.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCc---------------c--CCCChhhhhhhhhhhhhHH
Q 004776 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPI---------------L--SNIEPKQIKVWFQNRRCRE 82 (731)
Q Consensus 20 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~---------------~--~gLs~rQVkvWFQNRRaK~ 82 (731)
.++.+|.|+.|++.|+..||+.|..++||+...|.+||..|.. | ..|++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3456788899999999999999999999999999999999810 0 1289999999999999763
No 81
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.99 E-value=6.1e-10 Score=110.43 Aligned_cols=150 Identities=18% Similarity=0.275 Sum_probs=115.2
Q ss_pred ccccceeEEe-eChhHHHHHhcC---cchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeC
Q 004776 219 VAARACGLVG-LDPTRVAEILKD---RPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLE 294 (731)
Q Consensus 219 EASR~~glV~-m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~ 294 (731)
-.-|..++|. ..+..+.+.|+| +.+|...+...++|+. .| . .++|.++..|.|+ ..|||.++|+++..+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~--~~--~--~i~~~~~~~p~p~-~~RD~v~~~~~~~~~ 124 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC--NG--E--TVVYWEVKYPFPM-SNRDYVYLRQRRDLD 124 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE--TT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc--CC--C--EEEEEEEEcCCCC-CCceEEEEEEEEecc
Confidence 4569999995 999999999999 7889888888888765 22 2 2578888888886 999999999999875
Q ss_pred -CC--eEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHH
Q 004776 295 -DG--SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQ 371 (731)
Q Consensus 295 -~G--~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afga 371 (731)
+| .|+|+-.|++. |..|+...++|.+.+++|++|++.++|.|+||++-|++.. ..+|.-+.. ....-+.
T Consensus 125 ~~g~~~~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~l~n---~~~~~~~ 196 (214)
T 1ln1_A 125 MEGRKIHVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSWLIN---WAAKNGV 196 (214)
T ss_dssp STTCCEEEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHHHHH---HHHHTHH
T ss_pred cCCCeEEEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHHHHH---HHHHHHh
Confidence 66 49999999974 3345556899999999999999999999999999999987 557643332 2222234
Q ss_pred HHHHHHHH-HHhh
Q 004776 372 KTTMAALR-HLRQ 383 (731)
Q Consensus 372 r~w~~aLr-~~e~ 383 (731)
-.++..|| +|+.
T Consensus 197 ~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 197 PNFLKDMARACQN 209 (214)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 44555554 4543
No 82
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.96 E-value=4.9e-10 Score=116.51 Aligned_cols=126 Identities=22% Similarity=0.354 Sum_probs=102.8
Q ss_pred ccceeEEeeChhHHHHHhcCc---chhhhhCCcceEeeeccCCCcchHHHHHHHhhcccc--ccCCceeeEEeeeee-eC
Q 004776 221 ARACGLVGLDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTT--LAPARDFWLLRYTSV-LE 294 (731)
Q Consensus 221 SR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--LVp~Re~~fLRyckq-~~ 294 (731)
=|..++|...+..|.+.|+|. .+|-..+...++|+.+... .++| ++..|+| ++++|||..|||.+. ..
T Consensus 90 ~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-----~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~~ 163 (258)
T 3fo5_A 90 FHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-----DAIY-HVTSPALGGHTKPQDFVILASRRKPCD 163 (258)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-----EEEE-EEEECCCTTCSSCEEEEEEEEEECCSS
T ss_pred EEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-----eEEE-EEecCCccCCCCCCEEEEEEEEEeccC
Confidence 388899999999999999886 4677788888888877743 2456 5667775 799999999999987 44
Q ss_pred CCe-EEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCcccc
Q 004776 295 DGS-LVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEV 358 (731)
Q Consensus 295 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 358 (731)
+|. ++|+-+|++. +..|+...|+|++.+|+||+|+++++|.|+||++-|++- ..+|..
T Consensus 164 ~G~~yvi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~ 222 (258)
T 3fo5_A 164 NGDPYVIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYV 222 (258)
T ss_dssp TTCCEEEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHH
T ss_pred CCCEEEEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCce
Confidence 775 9999999983 445667789999999999999999999999999988873 445433
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.94 E-value=9.8e-09 Score=103.48 Aligned_cols=189 Identities=21% Similarity=0.317 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceeeCCCCCCCCCccceeec-cCCCccccccceeEEeeChhHHHHHhcCcc---hhhhh
Q 004776 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDRP---SWYRD 247 (731)
Q Consensus 172 l~~lA~~am~Ell~la~~~eplWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~~---~W~~~ 247 (731)
+.+.+.++|..+..+ .+.-|-.... +.| +.++-. ..+..+-.-|..++|...+..|.+.|+|.. +|-..
T Consensus 26 ~~~~~~e~l~~~~~~---~~~~W~~~~~-~~g---v~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~ 98 (224)
T 1jss_A 26 ISTKLQNTLIQYHSI---EEDEWRVAKK-AKD---VTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRL 98 (224)
T ss_dssp HHHHHHHHHHHHTTS---CGGGCEEEEE-ETT---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSS
T ss_pred HHHHHHHHHHHHhhh---CCCCCEEEEE-CCC---EEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCcccccccccc
Confidence 555555555555443 3556866421 112 222211 223334456999999999999999999965 88888
Q ss_pred CCcceEeeeccCCCcchHHHHHHHhhc-cccccCCceeeEEeeeeeeCCCeEEEEEeecCCCCCCCCCCCCCcccccccc
Q 004776 248 CRSVEVVNVLPTGSSGTIELLYMQLYA-PTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEML 326 (731)
Q Consensus 248 f~~~~~l~~~~~g~~G~lqLm~aE~~v-~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 326 (731)
|-..++|+.+.... .+.|.-+.. +-|++..|||.++|+.++.++| ++|+-+|++.. ..+ +.|+|++.+
T Consensus 99 ~~~~~vle~id~~~----~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~~ 167 (224)
T 1jss_A 99 MTSLDVLEHFEENC----CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYNH 167 (224)
T ss_dssp EEEEEEEEECSTTE----EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEEC
T ss_pred eeeEEEEEEcCCCe----EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEec
Confidence 88888888775331 223322332 3357999999999999998777 78899999742 222 379999999
Q ss_pred CCcceEeecCCC--ccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHh
Q 004776 327 PSGYLIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (731)
Q Consensus 327 PSGclIq~~~nG--~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e 382 (731)
++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|| +|+
T Consensus 168 ~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 168 PCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp SEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999999875 899999999998754 45 46666666666777777776 443
No 84
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.91 E-value=3.4e-10 Score=121.98 Aligned_cols=56 Identities=27% Similarity=0.592 Sum_probs=52.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHH
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~K 83 (731)
++.+..++..|+..||+.|+.++||+..+|.+||+++ ||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 3456789999999999999999999999999999999 9999999999999999875
No 85
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.50 E-value=3.2e-07 Score=93.93 Aligned_cols=195 Identities=16% Similarity=0.231 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHHHHHhcC---CCcceeeCCCCCCCCCccceeec---cCCCccccccceeEEe-eChhHHHHHhcC---
Q 004776 171 GLLSIAEETLTEFLSKATG---TAVEWVQMPGMKPGPDSIGIVAI---SHGCTGVAARACGLVG-LDPTRVAEILKD--- 240 (731)
Q Consensus 171 ~l~~lA~~am~Ell~la~~---~eplWi~~~g~~~g~~~~~~~~~---~~~~~~EASR~~glV~-m~~~~LVe~lmD--- 240 (731)
.+.++++..+.|.+..+.. ++.-|-.... +.| +.++-. ..|...-.=|..+.|. ..+..+.+.|+|
T Consensus 23 ~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~g---v~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~ 98 (255)
T 2e3n_A 23 RFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGE---MKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDV 98 (255)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETT---EEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCC---EEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcch
Confidence 4677788888888888753 3456876421 122 211110 1111111246566665 789999999999
Q ss_pred cchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeee----CC--CeEEEEEeecCCCCCCCCC
Q 004776 241 RPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL----ED--GSLVVCERSLNNTQNGPSM 314 (731)
Q Consensus 241 ~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~----~~--G~waVvDvSld~~~~~~~~ 314 (731)
+.+|-..+...++|+.+..+ + .+.|..+..|.|+ ..|||.++|++++. ++ +.|+|+..|++.. ..
T Consensus 99 r~~Wd~~~~~~~vle~i~~~--~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~----~~ 169 (255)
T 2e3n_A 99 RNDWETTIENFHVVETLADN--A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHD----SA 169 (255)
T ss_dssp HHHHCCSEEEEEEEEEEETT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCT----TS
T ss_pred HhhhhhhcceeEEEEEcCCC--C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCCC----CC
Confidence 56788888788888877542 2 4566677778885 89999999999987 33 5999999999842 34
Q ss_pred CCCCccccccc---cCCcceEeecCC--------CccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HHh
Q 004776 315 PQAPHFVRAEM---LPSGYLIRPCEG--------GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (731)
Q Consensus 315 ~~~~~~~r~~r---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~e 382 (731)
|+...++|... +.+|++|++..+ +.|+||++-|++..- .+|.- +++.....+.-.++..|| +++
T Consensus 170 P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v~ 245 (255)
T 2e3n_A 170 PLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYVQ 245 (255)
T ss_dssp CCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHHH
Confidence 55567899985 678999998733 579999999998764 46642 233333334444555554 444
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.45 E-value=4.6e-07 Score=88.26 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=93.6
Q ss_pred ccccceeEEeeChhHHHHHhcCcc---hhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCC
Q 004776 219 VAARACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLED 295 (731)
Q Consensus 219 EASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~ 295 (731)
-.=|..++|...+.++.+.|+|.+ +|...|...++|+. . ++. .++|.++..|-| +..|||.++|+....++
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~---~~~-~i~y~~~~~p~p-~~~RD~v~~~~~~~~~~ 100 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA-T---DTE-QYHYLDNSAPWP-VSNRDGVYHFTYEKAGD 100 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-C---SSE-EEEEEEECCSSS-CCCEEEEEEEEEEECTT
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-c---CCc-eEEEEEeecCCC-cCCcceEEEEEEEECCC
Confidence 456889999999999999999954 55555555667766 2 222 234556665555 79999999999999878
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccc
Q 004776 296 GSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (731)
Q Consensus 296 G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (731)
|...|+=.+ + .+..|+...++|.+.+++|++|++ .+|.|+||++-|+|..- .+|.
T Consensus 101 g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~ 155 (189)
T 3qsz_A 101 GAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS 155 (189)
T ss_dssp SCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH
T ss_pred CeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH
Confidence 876554333 2 233455568999999999999999 99999999999998773 4553
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.33 E-value=5.3e-08 Score=72.37 Aligned_cols=20 Identities=55% Similarity=0.896 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhhHHHHHHHH
Q 004776 69 KQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 69 rQVkvWFQNRRaK~Krkq~~ 88 (731)
+||+|||||||+|||+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999996654
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.58 E-value=0.099 Score=52.10 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCCh
Q 004776 401 AALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPP 480 (731)
Q Consensus 401 ~sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp 480 (731)
+.+.++|+..+..|-.-+.. ..+|..... .++|+|..+...+ . ++-++ ++...+ ++||
T Consensus 22 ~~y~~~a~~~~~~~l~~~~~--~~~W~~~~~--~~gv~v~~~~~~~--~-------------~~~~~--k~~~~v-~~~~ 79 (231)
T 2r55_A 22 SMAAQMSEAVAEKMLQYRRD--TAGWKICRE--GNGVSVSWRPSVE--F-------------PGNLY--RGEGIV-YGTL 79 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CSSCEEEEC--CSSEEEEEEECSS--S-------------SSEEE--EEEEEE-SSCH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCEEEEe--CCCEEEEEEccCC--C-------------CCcEE--EEEEEE-CCCH
Confidence 47999999999998876643 478987752 5679998876531 0 13333 555566 8999
Q ss_pred HHHHHHH--hh--hchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCC
Q 004776 481 AILLRFL--RE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMI 556 (731)
Q Consensus 481 ~~vf~FL--Rd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~ 556 (731)
+.||++| .| .|.+||.... ....+..|. .. ..|.+.-.. +.-..-+
T Consensus 80 ~~v~~~l~~~d~~~r~~Wd~~~~-----------------------~~~vle~i~----~~--~~i~~~~~~-~~~~~~v 129 (231)
T 2r55_A 80 EEVWDCVKPAVGGLRVKWDENVT-----------------------GFEIIQSIT----DT--LCVSRTSTP-SAAMKLI 129 (231)
T ss_dssp HHHHHHHCC--CCSHHHHCTTCS-----------------------EEEEEEECS----SS--EEEEEEECC-CBTTTTB
T ss_pred HHHHHHHHhhCcchhhhhccccc-----------------------eeEEEEEcC----CC--EEEEEEEec-cccCCcc
Confidence 9999999 76 8999997421 134444442 11 223332111 1001125
Q ss_pred CCCceEEEeeccCCCCCCCCCceEE-EEeeccCCC----CCC--CCccCCccEEecC
Q 004776 557 MPSDIFLLQLCSGVDENAVGNCAEL-VFAPIDASF----SDD--APIIPSGFRIIPL 606 (731)
Q Consensus 557 ~~~~~liLQe~~~~De~~sGs~s~v-VyAPvD~~d----~~~--v~LLPSGF~IlP~ 606 (731)
-+||..+|.-+ ..+++ |+++ +.-.||-+. +.+ +.++|+||.|-|+
T Consensus 130 ~~RDfv~~r~~-~~~~~----g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 181 (231)
T 2r55_A 130 SPRDFVDLVLV-KRYED----GTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL 181 (231)
T ss_dssp CCEEEEEEEEE-EECTT----SCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEEC
T ss_pred CCCeEEEEEEE-EEcCC----CEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe
Confidence 56788888875 34432 3354 577777542 233 3478999999994
No 89
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=94.76 E-value=0.5 Score=47.00 Aligned_cols=129 Identities=17% Similarity=0.197 Sum_probs=75.4
Q ss_pred CCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhcccc
Q 004776 423 DEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSID 500 (731)
Q Consensus 423 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l~~~ 500 (731)
..+|..... .++|+|..+...+ .+|-+. ++..-+ ++||+.||++|.| .|.+||....
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~~---------------~~~~~~--k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~~~- 100 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSEE---------------FNGYLY--KAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMT- 100 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECSS---------------SSSEEE--EEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEE-
T ss_pred CCCCEEEEE--CCCEEEEEEeccC---------------CCceEE--EEEEEE-eCCHHHHHHHHhCccccccccccee-
Confidence 668986643 3789999885531 023344 445556 8999999999998 8999996422
Q ss_pred hhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCCceE
Q 004776 501 AYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAE 580 (731)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~s~ 580 (731)
..+.+-+| +....|--....... -.-+-+||..++...- .++ . +.+
T Consensus 101 ----------------------~~~vle~i----d~~~~I~y~~~~~~~---~~~v~~RDfv~~r~~~-~~~--~--~~v 146 (224)
T 1jss_A 101 ----------------------SLDVLEHF----EENCCVMRYTTAGQL---LNIISPREFVDFSYTV-GYE--E--GLL 146 (224)
T ss_dssp ----------------------EEEEEEEC----STTEEEEEEEECCBT---TTTBCCEEEEEEEEEE-EET--T--EEE
T ss_pred ----------------------eEEEEEEc----CCCeEEEEEEccccc---CCCCCCCeEEEEEEEE-EcC--C--eEE
Confidence 13444444 222223222221110 0114567888888632 332 2 446
Q ss_pred EEEeeccCCC--CCC--CCccCCccEEecC
Q 004776 581 LVFAPIDASF--SDD--APIIPSGFRIIPL 606 (731)
Q Consensus 581 vVyAPvD~~d--~~~--v~LLPSGF~IlP~ 606 (731)
++.-.||-++ +.+ +.++++||.|-|+
T Consensus 147 i~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~ 176 (224)
T 1jss_A 147 SCGVSVEWSETRPEFVRGYNHPCGWFCVPL 176 (224)
T ss_dssp EEEEECCCCCCCTTSEECEECSEEEEEEEE
T ss_pred EEEeeeecCCCCCCCEEEEecccEEEEEEc
Confidence 6666776543 333 4578888888884
No 90
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.60 E-value=0.84 Score=46.15 Aligned_cols=173 Identities=23% Similarity=0.281 Sum_probs=95.4
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHH-HHHHhhhchhhhhcccc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAIL-LRFLREHRSEWADSSID 500 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~v-f~FLRd~R~eWd~l~~~ 500 (731)
..++|..... .++|+|..++.. ++ +.+-.-++..-+ +.+|+.+ +++|.| |.+||....
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~---~~-------------~~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~~~- 106 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVG---DG-------------NPLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDEDFV- 106 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCC---SS-------------CCCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTTBC-
T ss_pred CCCCCEEEec--CCCeEEEEEEcC---CC-------------CCcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhhhc-
Confidence 4568987753 578999988753 11 112234556667 5666655 578888 999996421
Q ss_pred hhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCCceE
Q 004776 501 AYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAE 580 (731)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~s~ 580 (731)
..+++-.|. ..+.|--....... .+-+||..+|.-. ..|. .. |++
T Consensus 107 ----------------------~~~vle~id----~~~~I~y~~~~~p~-----p~~~RDfv~~r~~-r~~~-~~--g~~ 151 (237)
T 2pso_A 107 ----------------------QWKVVETLD----RQTEIYQYVLNSMA-----PHPSRDFVVLRTW-KTDL-PK--GMC 151 (237)
T ss_dssp ----------------------CCEEEEEEE----TTEEEEEEEECCSS-----SCCCEEEEEEEEE-ESCC-GG--GCE
T ss_pred ----------------------eEEEEEEcC----CCcEEEEEEecCCC-----CcCCeEEEEEEEE-EEEC-CC--CEE
Confidence 134454442 22222222222221 2456788887763 2331 12 334
Q ss_pred EE-EeeccCCC-C--CC--CCccCCccEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCceEEEeeh
Q 004776 581 LV-FAPIDASF-S--DD--APIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQ 654 (731)
Q Consensus 581 vV-yAPvD~~d-~--~~--v~LLPSGF~IlP~~~~~dg~~~~~tldlas~l~~g~~~~~~~~~~~~~~~~~gSlLTvaFQ 654 (731)
+| ...|+-++ | .+ +..+++||.|-|++ .++|.+|.-+|
T Consensus 152 vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~------------------------------------~~~t~vt~~~~ 195 (237)
T 2pso_A 152 TLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG------------------------------------SGKSRLTHICR 195 (237)
T ss_dssp EEEEEECCCTTCCCCSSEECCEEEEEEEEEECS------------------------------------TTCEEEEEEEE
T ss_pred EEEEEcccCCCCCCCCcEEEEEeccEEEEEECC------------------------------------CCCEEEEEEEE
Confidence 44 44555431 1 22 55778888888831 13566666666
Q ss_pred hhccccchhhHHhHHHHHHHHHHHHHHHHHHHcCC
Q 004776 655 FAFEMHLQENVASMARQYVRGIIASVQRVALALSP 689 (731)
Q Consensus 655 ~l~~~~~~~sV~~~~~~~v~~v~~tVqri~~AL~~ 689 (731)
+=........+ +.-+......++.+++.++..
T Consensus 196 ~Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 196 IDLKGHSPEWY---SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ECCSSSCTTTT---TTHHHHHHHHHHHHHHHTTSC
T ss_pred eCCCCCchHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 55543323322 333455566789999999853
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=94.01 E-value=1.7 Score=42.86 Aligned_cols=192 Identities=14% Similarity=0.171 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHH
Q 004776 403 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 482 (731)
Q Consensus 403 l~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~ 482 (731)
-.++++.-+..+..-+. ..++|..... ..++|.|..++.. + .|.++ ++...+ ++||+.
T Consensus 12 y~~~~~~~~~~~l~~~~--~~~gW~~~~~-~~~gv~vy~~~~~----~------------~g~~~--k~~~~v-~~~~~~ 69 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS--NQEGWKKESQ-QDNGDKVMSKVVP----D------------VGKVF--RLEVVV-DQPMER 69 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCEEEEE-CTTSCEEEEEECS----S------------SCEEE--EEEEEE-SSCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCeEeee-cCCCcEEEEEEcC----C------------CceEE--EEEEEE-cCCHHH
Confidence 34555555555554443 3578987731 2356788887742 1 13344 555667 899999
Q ss_pred HHHHHh-h--hchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCC
Q 004776 483 LLRFLR-E--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPS 559 (731)
Q Consensus 483 vf~FLR-d--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~ 559 (731)
||++|. | .|.+||.... ..+++-.+.. .. .|+..... ..--.-+-+|
T Consensus 70 v~~~l~~d~~~r~~Wd~~~~-----------------------~~~vle~~~~----~t--~I~y~~~~-~~~~~~v~~R 119 (221)
T 3p0l_A 70 LYEELVERMEAMGEWNPNVK-----------------------EIKVLQKIGK----DT--FITHELAA-EAAGNLVGPR 119 (221)
T ss_dssp HHHHHTTTGGGTTTSCTTCS-----------------------EEEEEEECSS----SE--EEEEEEEC-C---CCSCCE
T ss_pred HHHHHHhccchhhhcCcchh-----------------------eEEEEEecCC----Ce--EEEEEeec-cccCCccCCc
Confidence 999995 4 8999996421 1344444422 22 23332111 0001124567
Q ss_pred ceEEEeeccCCCCCCCCCceEEEE-eeccCCC----CCC--CCccCCccEEecCCCCCCCCCCCcccccccccccCCCCC
Q 004776 560 DIFLLQLCSGVDENAVGNCAELVF-APIDASF----SDD--APIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGN 632 (731)
Q Consensus 560 ~~liLQe~~~~De~~sGs~s~vVy-APvD~~d----~~~--v~LLPSGF~IlP~~~~~dg~~~~~tldlas~l~~g~~~~ 632 (731)
|..+|.... .+ | +.+++. -.|+-+. +.+ +.++++||.|-|++ .
T Consensus 120 Dfv~~r~~~-~~----~-~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-----~------------------- 169 (221)
T 3p0l_A 120 DFVSVRCAK-RR----G-STCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLA-----G------------------- 169 (221)
T ss_dssp EEEEEEEEE-EC----S-SCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEET-----T-------------------
T ss_pred eEEEEEEEE-Ec----C-CeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECC-----C-------------------
Confidence 888877642 33 1 234443 4555331 333 35789999999941 0
Q ss_pred CCCCCCCCCCCCCCceEEEeehhhccccchhhHHhHHHHHHHHHHHHHHHHHHHcC
Q 004776 633 KASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALS 688 (731)
Q Consensus 633 ~~~~~~~~~~~~~gSlLTvaFQ~l~~~~~~~sV~~~~~~~v~~v~~tVqri~~AL~ 688 (731)
+ ..+|.+|.-+|+=........+.. .-...++..+++.++.++.
T Consensus 170 ---~-------~~~t~vt~~~~~Dp~G~iP~~lvn--~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 170 ---S-------PSKTKLTWLLSIDLKGWLPKSIIN--QVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp ---E-------EEEEEEEEEECEECCSSCCHHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred ---C-------CCcEEEEEEEEecCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 0 136777777776655433332222 1113456678888888886
No 92
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.63 E-value=0.78 Score=47.35 Aligned_cols=150 Identities=15% Similarity=0.244 Sum_probs=89.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeeccc
Q 004776 396 WGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLL 475 (731)
Q Consensus 396 ~Gr~~~sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL 475 (731)
+-+. +=+.|+.-.+.+...-. ..++|..... .++|+|..+... | .++-++.+-+
T Consensus 43 w~~~--~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~~------------------~-~l~~k~~~~v 96 (258)
T 3fo5_A 43 WDPS--NQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLEDD------------------K-FLSFHMEMVV 96 (258)
T ss_dssp CCGG--GHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEECS------------------S-CEEEEEEEEE
T ss_pred cCcc--cceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEECC------------------C-ceEEEEEEEE
Confidence 5444 67777776666555333 5689987653 468899874321 1 4555777788
Q ss_pred ccCChHHHHHHHhh--hchhhhhcccchhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccc
Q 004776 476 QDVPPAILLRFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYRE 553 (731)
Q Consensus 476 ~pvpp~~vf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~ 553 (731)
++||+.||++|.| .|.+||.... ..+++.+|. ..++|- ++.... ..
T Consensus 97 -~~~~~~v~~~L~D~~~R~~WD~~~~-----------------------~~~vle~id----~~~ivY--~~~~p~--~~ 144 (258)
T 3fo5_A 97 -HVDAAQAFLLLSDLRQRPEWDKHYR-----------------------SVELVQQVD----EDDAIY--HVTSPA--LG 144 (258)
T ss_dssp -SSCHHHHHHHHHCGGGGGGTCTTCC-----------------------EEEEEEEEE----TTEEEE--EEEECC--CT
T ss_pred -eCCHHHHHHHHhCchhHhHhhhhcc-----------------------EEEEEEEcC----CCeEEE--EEecCC--cc
Confidence 7999999999997 7999996421 134444442 224443 432221 11
Q ss_pred cCCCCCceEEEeeccCCCCCCCCCceEEE-EeeccCC----CCCC--CCccCCccEEecC
Q 004776 554 DMIMPSDIFLLQLCSGVDENAVGNCAELV-FAPIDAS----FSDD--APIIPSGFRIIPL 606 (731)
Q Consensus 554 ~~~~~~~~liLQe~~~~De~~sGs~s~vV-yAPvD~~----d~~~--v~LLPSGF~IlP~ 606 (731)
..+-+||..+|... ..++ ..|. .++| +-.|+-. -+.+ +..+|+||.|-|+
T Consensus 145 ~~v~~RDFV~lr~~-r~~~-~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 145 GHTKPQDFVILASR-RKPC-DNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp TCSSCEEEEEEEEE-ECCS-STTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE
T ss_pred CCCCCCEEEEEEEE-Eecc-CCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC
Confidence 23556788777763 2221 2442 2443 3344433 2344 4799999999994
No 93
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.52 E-value=1.7 Score=41.45 Aligned_cols=54 Identities=17% Similarity=0.414 Sum_probs=39.9
Q ss_pred CCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
++|..... .++|+|..+...+ + .+..-++...+ +.||+.||++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~----------~-------~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG----------S-------PLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT----------C-------SSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCCC----------C-------CeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 57987653 4689999887531 1 12345566777 7999999999997 89999964
No 94
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=93.27 E-value=1.5 Score=42.71 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=46.0
Q ss_pred HHHHHhhccC--CCCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHHHHHh
Q 004776 411 SRGFNEALNG--FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLR 488 (731)
Q Consensus 411 ~~~F~~~v~~--s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf~FLR 488 (731)
.+.+|..+.. ....+|..... .++|+|..+... + .++..-++...++++||+.||++|.
T Consensus 13 f~~~~~~l~~~~~~~~~W~~~~~--~~~v~v~~~~~~----~-------------~~~~~~k~~~~i~~~~~~~v~~~l~ 73 (214)
T 1ln1_A 13 FWEACAELQQPALAGADWQLLVE--TSGISIYRLLDK----K-------------TGLYEYKVFGVLEDCSPTLLADIYM 73 (214)
T ss_dssp HHHTTHHHHSCCCTTTTCEEEEE--ETTEEEEEEEET----T-------------TTEEEEEEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCCcEEEEE--CCCeEEEEeccC----C-------------CCcEEEEEEEEECCCCHHHHHHHHc
Confidence 3444444433 24568987754 357999887643 1 1244556677784499999999999
Q ss_pred h--hchhhhhc
Q 004776 489 E--HRSEWADS 497 (731)
Q Consensus 489 d--~R~eWd~l 497 (731)
| .|.+||..
T Consensus 74 d~~~r~~Wd~~ 84 (214)
T 1ln1_A 74 DSDYRKQWDQY 84 (214)
T ss_dssp CHHHHHHHCTT
T ss_pred CHHHHHHHHHH
Confidence 7 79999964
No 95
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=92.50 E-value=4.2 Score=40.15 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=73.3
Q ss_pred CCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEEEEEeecccccCChHHHH-HHHhh--hchhhhhccc
Q 004776 423 DEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL-RFLRE--HRSEWADSSI 499 (731)
Q Consensus 423 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL~A~tS~wL~pvpp~~vf-~FLRd--~R~eWd~l~~ 499 (731)
.++|..... ..++++|..+...+ .|.+. ++...+ ++||+.|| ++|.| .|.+||....
T Consensus 41 ~~~W~~~~~-~~~g~~vy~~~~~~----------------~g~~~--k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~~~ 100 (229)
T 1em2_A 41 EENWKFEKN-NEYGDTVYTIEVPF----------------HGKTF--ILKTFL-PCPAELVYQEVILQPERMVLWNKTVT 100 (229)
T ss_dssp GGGCEEEEE-CTTCCEEEEEEETT----------------TEEEE--EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEE
T ss_pred CCCCEEEEe-cCCCCEEEEEecCC----------------CCceE--EEEEEe-cCCHHHHHHHHHhCccchhhcccccc
Confidence 468987742 23567887765421 13343 444556 89999999 88876 8999997522
Q ss_pred chhhHHHHhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCCce
Q 004776 500 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 579 (731)
Q Consensus 500 ~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~sGs~s 579 (731)
. .+.+-.|. ....| ...-. .+.-..-+-+||..++.-. ..+++ +-
T Consensus 101 ~-----------------------~~vle~~~----~~t~I--~~~~~-~p~~~~~~~~RDfv~~r~~-~~~~~----~~ 145 (229)
T 1em2_A 101 A-----------------------CQILQRVE----DNTLI--SYDVS-AGAAGGVVSPRDFVNVRRI-ERRRD----RY 145 (229)
T ss_dssp E-----------------------EEEEEEET----TTEEE--EEEEE-CCBTTTTBCCEEEEEEEEE-EECSS----EE
T ss_pred e-----------------------EEEEEecC----CCeEE--EEEEe-cCcCCCCcCCCeeEEEEEE-EEcCC----EE
Confidence 1 34444442 22223 22211 0100112456788887764 33321 34
Q ss_pred EEEEeeccCCC----CCC--CCccCCccEEecC
Q 004776 580 ELVFAPIDASF----SDD--APIIPSGFRIIPL 606 (731)
Q Consensus 580 ~vVyAPvD~~d----~~~--v~LLPSGF~IlP~ 606 (731)
+++...|+-+. +.+ +.++++||.|-|+
T Consensus 146 vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 178 (229)
T 1em2_A 146 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKS 178 (229)
T ss_dssp EEEEEECCCTTSCCCTTSEECEECSEEEEEEEC
T ss_pred EEEEecccCCCCCCCCCCEeeeecccEEEEEec
Confidence 66666776542 222 5578999999994
No 96
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=92.00 E-value=0.91 Score=39.87 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=75.3
Q ss_pred ceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEEE
Q 004776 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (731)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (731)
.+..|...+.++-+.|.|.+.|.+-+|.+.-+.+...+.+|. ..++.+--+ +.+.-+..++... +++.-++..
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~----~~~~~~~~~--g~~~~~~~~~~~~-~~~~~i~~~ 78 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGART----RSRWVAVAM--GKKVRWLEEEEWD-DENLRNRFF 78 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEE----EEEEEEEET--TEEEEEEEEEEEE-TTTTEEEEE
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCcc----EEEEEEEeC--CceEEEEEEEEEc-CCCcEEEEE
Confidence 345677788999999999999998888765444443322331 011111111 2233344555443 333221111
Q ss_pred eecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHHH-HH
Q 004776 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HL 381 (731)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aLr-~~ 381 (731)
.+++ + ...+.. -.-+++.++| |+|+|..+.+.....+..++.+++..-+--+.+..+.+|+ ++
T Consensus 79 -~~~g----~----~~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 142 (147)
T 2d4r_A 79 -SPEG----D----FDRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERV 142 (147)
T ss_dssp -EEEE----S----CSEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eccC----C----hhheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 001111 1345777887 9999999888764334455565554333335666777773 66
Q ss_pred hhhh
Q 004776 382 RQIS 385 (731)
Q Consensus 382 e~la 385 (731)
|+.+
T Consensus 143 e~~~ 146 (147)
T 2d4r_A 143 LAAS 146 (147)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 6543
No 97
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.50 E-value=0.6 Score=40.85 Aligned_cols=48 Identities=33% Similarity=0.391 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 78 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 78 RRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
||+|.|+++....+...... |.++|..|..++.+|..|...|++-|..
T Consensus 28 rrSR~krk~r~~e~~~r~~~-------Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 28 RKSRDKAKMRNLETQHKVLE-------LTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666655555544444 4555555555555666666666665544
No 98
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.23 E-value=0.37 Score=40.50 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=36.8
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhh
Q 004776 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQN 77 (731)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQN 77 (731)
.+.|+.+|..++.........|+.+. +|+..|||-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 48999999999999999999999999 9999999999954
No 99
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.69 E-value=1 Score=38.54 Aligned_cols=46 Identities=35% Similarity=0.364 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 78 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 78 RRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
||+|.|+++....++... ..|..+|..|..++.+|..|...|++-|
T Consensus 28 krSR~krk~r~~e~~~r~-------~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKV-------LELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666665554444443 4455555555556666666666666544
No 100
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.86 E-value=1.4 Score=36.09 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
|++.|++.....+.. +.+.|..+|..|..+++.|+.|+.+|++-+
T Consensus 16 R~R~KKk~~~~~le~-------~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 16 RYRQKKRAEQEALTG-------ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655555554 445556666666666677777777777655
No 101
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=86.08 E-value=2 Score=35.05 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
|++.|++.....++..... +..+|..|..++..|+.|...|+..|
T Consensus 16 rcR~rKk~~~~~Le~~v~~-------L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQ-------LEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444 44455555555555666666666554
No 102
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.62 E-value=2.5 Score=34.13 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
|++.|++.....+ ....+.+..+|..|..+++.|+.|+..|++.+
T Consensus 15 k~R~rKk~~~~~L-------e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 15 RSRQKRKVWVQSL-------EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444454444444 44555666677777777788888888888765
No 103
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.27 E-value=5.1 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 102 NKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 102 n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
...+..+...++.+-..|+.+...|++|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544
No 104
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.11 E-value=3.4 Score=34.71 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004776 81 REKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFF 126 (731)
Q Consensus 81 K~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~L 126 (731)
+.+|.+.-..|+..-..+...+..+..+|..|..++..|..||..|
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555566666666666655555555555555543
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.94 E-value=2.8 Score=34.00 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
|++.|++.....++. ....+..+|..|..++..|+.|+..|++.|
T Consensus 15 k~R~rKk~~~~~Le~-------~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 15 KSRKRKLERIARLEE-------KVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444 445555666666666777777777777655
No 106
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=76.90 E-value=9.8 Score=35.80 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=69.5
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEE
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVC 301 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 301 (731)
..+-+|.-.+..+-+.+-|.+.|-+.+|-+.-+.++..+.++ +.+++.+.- -..++-|.-|+...-++.. |.
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~----~~~~~~~~~--~G~~~~~~s~~~~~~~~~~--i~ 79 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY----QVVRLHVDV--AGEINTWTSRRDLDPARRV--IA 79 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE----EEEEEEEEE--TTEEEEEEEEEEEETTTTE--EE
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE----EEEEEEEec--CCEEEEEEEEEEEeCCCCE--EE
Confidence 456677788999999999999999999987655555433222 122333211 1223333434433322222 11
Q ss_pred EeecCCCCCCCCCCCCCccccccccCCcce-EeecCCCccEEEEEEeeeccCCCccccchhhh
Q 004776 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYL-IRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 363 (731)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~~rlPSGcl-Iq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~ 363 (731)
-..++. +++ ...+ .|.. +.+.++|.|+|+|.-+.++....+..++.++.
T Consensus 80 ~~~~~~--~gp----f~~~-------~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~ 129 (172)
T 3tfz_A 80 YRQLET--API----VGHM-------SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKL 129 (172)
T ss_dssp EEEEEC--CTT----EEEE-------EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTB
T ss_pred EEEeeC--CCC----hhhc-------EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhcccc
Confidence 112211 011 0011 2332 56777789999999999998877877777765
No 107
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.54 E-value=10 Score=33.34 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=37.7
Q ss_pred CCCChhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 64 SNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 64 ~gLs~rQVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
-||+..+|.-|=|-||+= |.+--...++.. -..+...|..++..+..++.+|+.||++++.|++..
T Consensus 16 ~gls~eev~~lKq~RRtl-KNRgyAq~CR~K---r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 16 RGFTKDEVIRLKQKRRTL-KNRGYAQSCRYK---RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp TTCCHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhh-hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999888766643 332222222221 112334455666666666666666766666666543
No 108
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.26 E-value=8.4 Score=33.23 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=32.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 89 ~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
..++.+.+.|+.+|..+.+++..+......|..||++|++|..
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777778888999988875
No 109
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=74.04 E-value=4.9 Score=32.91 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHHHhhhh
Q 004776 112 LQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 112 l~~e~~~L~~ena~Lk~el~~ 132 (731)
|+.++.+|..||..|+.++.+
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.31 E-value=14 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..+..+...|+.+-..|+.+...|+.|+..+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 111
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.96 E-value=10 Score=33.81 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
++.+|..++......-.....|+.++.+|+.||.+|++|-+.
T Consensus 49 le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 49 MEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444455567888888999999999887654
No 112
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.79 E-value=7.8 Score=31.32 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
...|+.++..|..+|..|+.++..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444
No 113
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.70 E-value=21 Score=28.86 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
...|+.++..|..+|..|+.++..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 114
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.20 E-value=28 Score=30.32 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhcc
Q 004776 99 TAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (731)
Q Consensus 99 ~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~~ 137 (731)
+.....+..+...|+.+=.+|+.+...|+.|+..+..+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666666666666666664444
No 115
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.84 E-value=14 Score=27.90 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.|...-+.+...+.+|+..++-|..||..|||-+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34455566777778888889999999999998764
No 116
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=66.74 E-value=2.4 Score=36.37 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=30.0
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhh
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQ 76 (731)
.+||+++....-..+... ......++|+++ |+++..|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHH----CcCHHHHHHHHH
Confidence 578888876655555322 012367889999 999999999975
No 117
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=66.15 E-value=14 Score=33.39 Aligned_cols=136 Identities=11% Similarity=0.090 Sum_probs=74.5
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcc---eEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeE
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSV---EVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSL 298 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~---~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~w 298 (731)
+.+..|...+..+-+.+.|.+.|-+.+|.. ++++-...| +|. -+.+++.+ -.-+.++-|..|++..-.+ .
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~-g~~--~~~~~~~~--~~~~~~~~~~~~v~~~~~~--~ 77 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDG-AVS--TVDAEAQV--GFSFLREKFATRVRRDKDA--R 77 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEET-TEE--EEEEEEEC--STTSSCCEEEEEEEEETTT--C
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCC-CCc--eEEEEEEE--EecceeEEEEEEEEEcCCC--c
Confidence 345677788999999999999999988865 444432211 111 02233333 2235566677788764333 2
Q ss_pred EEEEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH
Q 004776 299 VVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL 378 (731)
Q Consensus 299 aVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aL 378 (731)
.|.-..+++ + ...+...+ -+++.++| |+|++.-+.|+. ..++..+...-+.-.+++.+.++
T Consensus 78 ~i~~~~~~G----~----f~~~~g~w------~f~~~~~g-t~v~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~f 138 (148)
T 1t17_A 78 SIDVSLLYG----P----FKRLNNGW------RFMPEGDA-TRVEFVIEFAFK----SALLDAMLAANVDRAAGKLIACF 138 (148)
T ss_dssp EEEEEESST----T----SSCEEEEE------EEEEETTE-EEEEEEEEECCS----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCC----C----hhccEEEE------EEEECCCC-eEEEEEEEEEEC----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333442 1 11112222 24677778 999999888875 22334444222222556666666
Q ss_pred -HHHhh
Q 004776 379 -RHLRQ 383 (731)
Q Consensus 379 -r~~e~ 383 (731)
+.++.
T Consensus 139 ~~r~~~ 144 (148)
T 1t17_A 139 EARAQQ 144 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 35554
No 118
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=65.63 E-value=5.7 Score=39.96 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=39.2
Q ss_pred CCCCccccccCCCcceEEEEecCCCccccccccccCCCCCCCceEE-EEEeecccccCChHHHHHHHhh--hchhhhhc
Q 004776 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVL-CAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (731)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~g~~~p~G~VL-~A~tS~wL~pvpp~~vf~FLRd--~R~eWd~l 497 (731)
.+.+|..... .++|+|..+...+ .|.++ .-++..-+.+++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~----------------~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEE----------------NGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEE----------------TTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCC----------------CCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3468987753 4679998887531 12221 1233344546999999999997 89999964
No 119
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=65.43 E-value=16 Score=29.67 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~ 128 (731)
.|..-|..+.+|.+.++++++.|+.||..||.
T Consensus 31 QLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 31 QLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45566788889999999999999999999874
No 120
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=63.71 E-value=26 Score=32.60 Aligned_cols=142 Identities=9% Similarity=0.096 Sum_probs=77.2
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeEEeeeeeeCCCeEEEE
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVC 301 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 301 (731)
..+.+|.-.+..+-+.+.|.++|...+|..........| ....+.+++.+- -...|+-|..||...-++. .+..
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~---~~~~~~a~l~vg--~~~~~~~~~s~~~~~~~~~-~I~~ 83 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNN---AYRWEMEKVGVD--KHAIQSVYACTYHADKEAG-KITW 83 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETT---EEEEEECCBSSG--GGCBCCEEEEEEEEETTTT-EEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCC---ceEEEEEEEeee--eEEEEEEEEEEEEEcCCCC-EEEE
Confidence 346678889999999999999999999987665433322 111111222222 2334778888987654333 2222
Q ss_pred EeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhhhhhHHHHHHHHHHHH-HH
Q 004776 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RH 380 (731)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~~Sg~afgar~w~~aL-r~ 380 (731)
+ .+++ + |.+ .+-.-.-+++.++|.|+|+|.=+.|.. ..++.++..+...-.--++++.+.+. +.
T Consensus 84 ~-~~~g----~-------~~~--~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af~~r 148 (161)
T 3p9v_A 84 S-PIKG----E-------GNG--VVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTYMAN 148 (161)
T ss_dssp E-ECTT----S-------TTE--EEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EecC----c-------cce--eEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222 1 100 011123457788888999999888876 12344444333111111444455544 34
Q ss_pred Hhhh
Q 004776 381 LRQI 384 (731)
Q Consensus 381 ~e~l 384 (731)
++.+
T Consensus 149 a~~~ 152 (161)
T 3p9v_A 149 LKKA 152 (161)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4433
No 121
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.80 E-value=21 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..++..-..+++.+-+++...|.|..-.+.|++|+.|+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555566665554
No 122
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=61.41 E-value=5.1 Score=41.20 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
+..+|++|+.++..++++.. +.++|+.||++||+.|.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 44556666666655555533 335588899999988763
No 123
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.02 E-value=33 Score=29.21 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
..+......|+.+=.+|+.+...|+.|+..+..+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555333
No 124
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.97 E-value=25 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.++..+..+.+.|.+|..-+++-+.|...|+++++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666777777777777777888888888876
No 125
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=59.54 E-value=1.1e+02 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=30.0
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccC
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPT 259 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~ 259 (731)
..+.+|.-.+..+-+.+.|.++|-+.+|.+.-..++..
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~ 43 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQ 43 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEec
Confidence 34667777888999999999999999997765555543
No 126
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.52 E-value=8.9 Score=30.49 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNAA 134 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~~ 134 (731)
...|+.++.+|..||..|++++..+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888877663
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.47 E-value=16 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.+.+.|+.|+..|+.++..|..+++.|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666667777777776664
No 128
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=56.41 E-value=62 Score=30.33 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred cceeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhh-ccccccCCceeeEEeeeeeeCCCeEEE
Q 004776 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLY-APTTLAPARDFWLLRYTSVLEDGSLVV 300 (731)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~-v~SPLVp~Re~~fLRyckq~~~G~waV 300 (731)
..+.+|.-.+..+-+++-|..+|-+.+|-..-..++..+.++ +.+.+. ..+.- -.++-|+.|+... .++..+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~----~~~rl~~~~~~~-G~~~~~ts~~~~d-~~~~~I- 78 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDK----VTFRLTMHPDAD-GKVWSWVSERVAD-PVTRTV- 78 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSE----EEEEEEECCCTT-SCCCEEEEEEEEE-TTTTEE-
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCE----EEEEEEEEeccC-ceEEEEEEEEEEc-CCCCEE-
Confidence 456777888999999999999999999977555555443222 112221 01111 2344455666433 233222
Q ss_pred EEeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCC
Q 004776 301 CERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 353 (731)
Q Consensus 301 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~ 353 (731)
+..+. .++| | +.+=...-+.+.++ +|+|+|.-+.++++.
T Consensus 79 -~~~~~--~~gP-------f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 79 -RAQRV--ETGP-------F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp -EEEES--SCTT-------E---EEEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred -EEEEc--cCCC-------h---hhccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 22211 1112 2 11223345677777 599999999999755
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.34 E-value=48 Score=30.99 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=21.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 92 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 92 ~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..+...++.+....+.+++.+.++...|+.++..|+.++.++
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555555444
No 130
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=53.03 E-value=18 Score=28.15 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=32.0
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhh
Q 004776 27 YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (731)
Q Consensus 27 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQ 76 (731)
+.+||++........+... .+......++|+++ |+++.+|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 4579998877775555433 22122366899999 999999999975
No 131
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.24 E-value=52 Score=26.02 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004776 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDR 111 (731)
Q Consensus 79 RaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~ 111 (731)
|++.|++.....|+.....|..+|..|.+++..
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555544444444444444333
No 132
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=49.80 E-value=23 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004776 101 MNKLLMEENDRLQKQVSQLVYENTFFR 127 (731)
Q Consensus 101 ~n~~l~ee~~~l~~e~~~L~~ena~Lk 127 (731)
+|+.+..+.+.-+.++.+|+.||..|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 555666666666666777777777665
No 133
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.05 E-value=51 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHHHHHhhhh
Q 004776 113 QKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 113 ~~e~~~L~~ena~Lk~el~~ 132 (731)
++++.+|+.|+.+||..+..
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666655543
No 134
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=47.65 E-value=28 Score=25.33 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 105 LMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 105 l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
++..+...++++.+|+.+|+.|.+|+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 556666677777788888888888764
No 135
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.47 E-value=20 Score=25.87 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhhcc
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQNAATLA 137 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~~~~~~ 137 (731)
.+|+..+.+|..+|..|++|..|+..+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3566677777778888888877775543
No 136
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.03 E-value=25 Score=36.20 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 101 MNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 101 ~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
++..+.+.|++|..++++++.|..+||+|++++
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555556666667777777766
No 137
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.51 E-value=1.2e+02 Score=26.55 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 80 CREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 80 aK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
|+.|+.+....++.++..|..+-+.+++|+.++.+ |-..+|+.++.+
T Consensus 42 CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-------e~d~~k~k~~~L 88 (90)
T 2wt7_B 42 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-------ERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 33455555556666666665555555555555554 445555555543
No 138
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=42.45 E-value=7.2 Score=35.32 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=42.4
Q ss_pred CCChhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 65 NIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 65 gLs~rQVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
||++.|+.-.=|-||. .|.+.-...++. +-..+...|..++..|+.++.+|..||+.|+.|++.+
T Consensus 27 ~Ls~~e~~~lK~~RR~-lKNR~yAq~CR~---rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRT-LKNRGYAASCRV---KRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHh-hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888776654443 233222222222 2223556677777778888888999999999998876
No 139
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.90 E-value=96 Score=26.67 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 86 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 86 q~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
.+...++..|..+..++..++.....+..+.++|+.|....+..|..
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888887777777777777777777666665554
No 140
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.21 E-value=17 Score=32.97 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
.++|.+++++|+.||..||+++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999965
No 141
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=40.83 E-value=22 Score=25.72 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhh
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRR 79 (731)
.+++++...+...+... ....++|+.+ |++...|.-|++...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 46666666666666543 2356789999 999999999997543
No 142
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=40.54 E-value=39 Score=29.90 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=37.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhH
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK 81 (731)
++|.+||.++...+-..+.+++.+. ..++|+++ |+++..|.-|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHh----CCCHHHHHHHHhchhhh
Confidence 4577899999877777775555433 33688999 99999999998765543
No 143
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.86 E-value=94 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 104 LLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 104 ~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
.+..++..+..+...|+.++..|+.|+
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444444444444444443
No 144
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.79 E-value=20 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.|+.+|..++.|...-..++.+|..|--.||+-+.
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 34444444444444444444444444444444333
No 145
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=39.57 E-value=42 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
..+++-|.+|-.++++|...+....||+.|+..+
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777777777777777777544
No 146
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=38.05 E-value=1.3e+02 Score=26.67 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=36.8
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+++.|.+.+...|-+.. .-.++|..+ |+++..|+.|.+.=|.+.|+
T Consensus 21 ~~L~~~~r~vl~l~y~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDY-----SLAEIADEF----GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCC-----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3688999999988765442 357789999 99999999999765555554
No 147
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.04 E-value=1.3e+02 Score=22.85 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
.++..|-.+......+++-+..|+.|.++|..|.
T Consensus 14 rlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 14 RLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444454455566777777888888887765
No 148
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=38.01 E-value=36 Score=28.77 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
.+-+.|++.+.+|..+..+|..||..||+-.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457788888999999999999999998643
No 149
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.87 E-value=1.5e+02 Score=27.16 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004776 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (731)
Q Consensus 97 ~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~e 129 (731)
+|+.+...|.+.......++.+||.+|..|+..
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 334444444444444444444555555444433
No 150
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.86 E-value=2.1e+02 Score=31.73 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhccc
Q 004776 104 LLMEENDRLQKQVSQLVYENTFFRQQTQNAATLAT 138 (731)
Q Consensus 104 ~l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~~~ 138 (731)
.++...+..+++..+++.|++.+++|+...-.-..
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344445556777777777777776544333
No 151
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.22 E-value=77 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004776 101 MNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (731)
Q Consensus 101 ~n~~l~ee~~~l~~e~~~L~~ena~Lk~ 128 (731)
+|+.|.+....++.++..|+.+|..||.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 152
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.19 E-value=1.6e+02 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=27.4
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhh
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNR 78 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNR 78 (731)
..+..|+.+++..|.. ... .+.+ |++-.+|+-.+...
T Consensus 50 ~g~R~Y~~~dl~~l~~------------I~~-lr~~----G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 50 KGDRIFNEEALKYLEM------------ILC-LKNT----GMPIQKIKQFIDWS 86 (148)
T ss_dssp TCCEEBCHHHHHHHHH------------HHH-HHTT----TCCHHHHHHHHHHH
T ss_pred CCCeecCHHHHHHHHH------------HHH-HHHc----CCCHHHHHHHHHhh
Confidence 4466889999888853 233 3677 99999999988753
No 153
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.79 E-value=31 Score=35.55 Aligned_cols=38 Identities=32% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~ 128 (731)
++.+...+.+.|+.|.++..++.+|+.+|+.|+.+|++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556677778888888999999999999999998875
No 154
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.18 E-value=43 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..|.+++..++.+..+|+.+|..|+++|..+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677777888888889999999888765
No 155
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=34.59 E-value=49 Score=23.22 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=29.8
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhh
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQN 77 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQN 77 (731)
..+++++...+...+... . ...++|+.+ |++...|..|.+.
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~----s~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-V----SLHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHH----CcCHHHHHHHHhh
Confidence 357787776555556443 2 356789999 9999999999854
No 156
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.91 E-value=36 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
.+|+..+..|..+|..|++|..|+..+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344555555555555555555555433
No 157
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.72 E-value=1.1e+02 Score=27.92 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 104 LLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 104 ~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
.+..|+..|..+++....|-.+||.+.+
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3334444444444444444444444443
No 158
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.58 E-value=2e+02 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
..+++.|...+...|-..- .-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 24 ~~L~~~~r~vl~l~~~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLEDY-----SLSEIADTF----NVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GGSCHHHHHHHHHHHTSCC-----CHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3578888888888764442 357889999 99999999998755555554
No 159
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=32.31 E-value=49 Score=27.68 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=31.3
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhh
Q 004776 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (731)
Q Consensus 25 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQ 76 (731)
+++.+|+.++....-..+... . ...++|+++ |+++..|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHH----CcCHHHHHHHHH
Confidence 456689998865555556432 2 356789999 999999999974
No 160
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=32.04 E-value=79 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 102 NKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 102 n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
-..|.++..++..+..+|+.||..|+++|++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666677777778888888888888764
No 161
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.72 E-value=2.8e+02 Score=24.71 Aligned_cols=43 Identities=40% Similarity=0.448 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004776 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (731)
Q Consensus 87 ~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~e 129 (731)
++.+++.......+.-..|..+.++|..+-+.|+.||+.-+++
T Consensus 52 e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 52 ENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3334444444444455556666666666666677777766655
No 162
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.46 E-value=1.7e+02 Score=27.20 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=29.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004776 86 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (731)
Q Consensus 86 q~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~ 131 (731)
++...++.+...+...++.+.+++.++.++...|+.++.+|..++.
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666666666666654
No 163
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.33 E-value=1.1e+02 Score=26.43 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004776 101 MNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (731)
Q Consensus 101 ~n~~l~ee~~~l~~e~~~L~~ena~Lk~ 128 (731)
+|+.|.++...++.++..|+.||..|+.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666666666554
No 164
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.75 E-value=1.8e+02 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
++.+-..+..+|+.++..+-.-..-+.-|..|.+.||..+
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4444555666666666554332222223344445555443
No 165
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.48 E-value=2.1e+02 Score=22.54 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
++|-.|+..|+.||..||+||+--
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhh
Confidence 345566667777777777777643
No 166
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=28.99 E-value=60 Score=29.53 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=24.0
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+..+.-.|+.+|||... |-... =.|||-|||+++..
T Consensus 15 vRiIkiLyQSNPyP~pe-------------GTRqa-----RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPE-------------GTRQA-----RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCC-------------CCTTT-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCC-------------Cchhh-----hHhHHHHHHHHHHH
Confidence 34555669999999875 21111 15899999987754
No 167
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.80 E-value=1.4e+02 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.+|+.|.++...++.++..|+.||..|++-++.+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777877777655544
No 168
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.31 E-value=2e+02 Score=22.60 Aligned_cols=36 Identities=31% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFF 126 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~L 126 (731)
++..+..+.+.|..|.+...+...++..|+.|..+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666777777777766666666677666554
No 169
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.59 E-value=58 Score=23.59 Aligned_cols=28 Identities=4% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
+.+++..+..|..+|..|.+|..|+..+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3445555566666666666666665443
No 170
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.87 E-value=1.3e+02 Score=20.98 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQT 130 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el 130 (731)
..+++|...+.++...|+.|.+.|||-+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3566777777788888888888888753
No 171
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.82 E-value=56 Score=23.61 Aligned_cols=26 Identities=0% Similarity=0.077 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhh
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQNAAT 135 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~~~~ 135 (731)
.+|+..+..|..+|..|.+|..|+..
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34445555555555555555555543
No 172
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.51 E-value=75 Score=22.84 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 111 RLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 111 ~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
+|+..+..|..+|..|.+|..|+..+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555433
No 173
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.49 E-value=2.5e+02 Score=22.69 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004776 78 RRCREKQRKEASRLQAVNRKLTAMNKLLME 107 (731)
Q Consensus 78 RRaK~Krkq~~~~l~~~n~~L~a~n~~l~e 107 (731)
||++.||+.....++..-..|..+|..|..
T Consensus 22 rrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 22 RRSRARKLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666665555555555554444444333
No 174
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.29 E-value=81 Score=27.13 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 103 ~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
..|.+++.++..+..+|+.+|..|+++|+.+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666667777778888999999888765
No 175
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=25.95 E-value=61 Score=27.22 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=24.2
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHHHHHH
Q 004776 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (731)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Krkq~~ 88 (731)
+....-.|+.+|||++.--.+ |+ .|||-+|++++..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-----------------HHHHHHHHHHHHH
Confidence 445566799999998652222 21 4899999987654
No 176
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=25.94 E-value=1.1e+02 Score=25.56 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
.+++.|.+.|...|-+.. .-.++|..+ |++...|+.+...=|.|.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDL----GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 477788888877654432 357789999 99999999888654444443
No 177
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.68 E-value=2e+02 Score=24.80 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 107 EENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 107 ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+||.+|.+++.+++.|.+.||++...+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555444444
No 178
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.92 E-value=2.7e+02 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 105 LMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 105 l~ee~~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
.-+||..|.+++.+|..|++.||++++.+..+
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777666444
No 179
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.73 E-value=78 Score=22.92 Aligned_cols=27 Identities=4% Similarity=0.144 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhhc
Q 004776 110 DRLQKQVSQLVYENTFFRQQTQNAATL 136 (731)
Q Consensus 110 ~~l~~e~~~L~~ena~Lk~el~~~~~~ 136 (731)
.+|+..+.+|..+|..|.+|..|+..+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445566666667777777777666444
No 180
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.55 E-value=1.2e+02 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 106 MEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 106 ~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
-.||++|.+++.+-..|.++||++-..+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567778888877778888888776544
No 181
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.08 E-value=2.7e+02 Score=23.37 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 004776 109 NDRLQKQVSQLVYENTFFRQQTQNAAT 135 (731)
Q Consensus 109 ~~~l~~e~~~L~~ena~Lk~el~~~~~ 135 (731)
++.+++++++...+...|+.||++..+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455777888888889999999988743
No 182
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.02 E-value=1.2e+02 Score=29.75 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 101 MNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 101 ~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.-.-+.+.+.+|+.+.++|+.||.+|+.|.+++
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677777777777777777776654
No 183
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.41 E-value=82 Score=24.30 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHHHH
Q 004776 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (731)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~Kr 84 (731)
.+++.+...+...|-.. ..-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 57889999998876443 2356789999 99999999988654444443
No 184
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.14 E-value=2.2e+02 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 100 a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.+|+.|.++...++.++..|+.||..||.=.+.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777776544433
No 185
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.08 E-value=84 Score=21.92 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhh
Q 004776 111 RLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 111 ~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
++++++.|-..||-+|.||..++
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666666666666665543
No 186
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.96 E-value=3.4e+02 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 004776 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (731)
Q Consensus 91 l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~ 132 (731)
+-.+|..|......+.-..+.|-.++.+|-.|+..|+.|+..
T Consensus 14 Li~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 14 LILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444455555554455545555555556666666666666553
No 187
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.49 E-value=1.8e+02 Score=31.63 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 105 LMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 105 l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
++.+.+..+.+.++|+.||++++.+++.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33444455667778888888888887765
No 188
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=21.21 E-value=4.4e+02 Score=23.42 Aligned_cols=118 Identities=10% Similarity=0.033 Sum_probs=62.7
Q ss_pred eeEEeeChhHHHHHhcCcchhhhhCCcceEeeeccCCCcchHHHHHHHhhccccccCCceeeE--EeeeeeeCCCeEEEE
Q 004776 224 CGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWL--LRYTSVLEDGSLVVC 301 (731)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLVp~Re~~f--LRyckq~~~G~waVv 301 (731)
+-.|...+.++-+.|.|.+.|.+-+|.+.-+.....|. . ...+.+ +.-+.+.-+. ++|...-....|++.
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~~---~---~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDK---Y---KADLQI--GIAAVKGKYDAIIEVTDIKPPYHYKLL 79 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTE---E---EEEEEE--CCGGGCEEEEEEEEEEEEETTTEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCCe---E---EEEEEE--EeeeEEEEEEEEEEEEecCCCcEEEEE
Confidence 44667788999999999999998888776555543221 0 011111 1112222222 244444444555444
Q ss_pred EeecCCCCCCCCCCCCCccccccccCCcceEeecCCCccEEEEEEeeeccCCCccccchhhh
Q 004776 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 363 (731)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l~rpl~ 363 (731)
-..-+. + ++.+. ---+-+.+..+|+|+|+|.-.+++... +..+..+++
T Consensus 80 ~~~~~~----~------~~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 80 VNGEGG----P------GFVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp EEEEET----T------EEEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred EEecCC----C------ccEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 332221 0 11111 012345666778899999877776432 344555555
No 189
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.11 E-value=2.6e+02 Score=28.34 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=39.6
Q ss_pred ChhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 67 EPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 67 s~rQVkvWFQNRRaK~Krkq~~~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
+...||.+-+.|-.+.|.+.. .+...-+..++|+..+.+++.+.|...|.+|+++++.
T Consensus 161 sde~Ik~yLa~R~~~lK~kl~---------~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVKGTCH---------DLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777666665321 2233334556677778888888888889999998886
No 190
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.46 E-value=3.3e+02 Score=22.52 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=34.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhh
Q 004776 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (731)
Q Consensus 24 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQ 76 (731)
...+..+|.++-..|+......+.-....=..+|..+| |=+..||+.=|+
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp---GRT~~qcr~Ry~ 64 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP---SKSKEDCIARYK 64 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS---SSCHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC---CCCHHHHHHHHH
Confidence 34566899999999999888765434444455777773 566777665444
No 191
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.40 E-value=1.2e+02 Score=23.83 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004776 96 RKLTAMNKLLMEENDRLQKQVSQLV 120 (731)
Q Consensus 96 ~~L~a~n~~l~ee~~~l~~e~~~L~ 120 (731)
+.|+.+|..++.+...|.++.+.|+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 192
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.33 E-value=1.5e+02 Score=23.10 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 004776 105 LMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (731)
Q Consensus 105 l~ee~~~l~~e~~~L~~ena~Lk~el~~~~ 134 (731)
+++-+.+|-..+++|......+.||++|+.
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 444444444445555555555555555553
No 193
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.30 E-value=4.2e+02 Score=23.97 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=31.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 004776 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (731)
Q Consensus 89 ~~l~~~n~~L~a~n~~l~ee~~~l~~e~~~L~~ena~Lk~el~~~ 133 (731)
.-+++.....+.....-+.+-+++..+..+|..+++.|+.+++++
T Consensus 65 ~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 65 PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 345555555555666666666777778888888888888887654
No 194
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.06 E-value=1.4e+02 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=35.1
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCChhhhhhhhhhhhhHH
Q 004776 27 YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCRE 82 (731)
Q Consensus 27 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gLs~rQVkvWFQNRRaK~ 82 (731)
...+|+.|.+.|...++.. .-.++|..+ |+++..|+.+.++=+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L----~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKL----NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 5679999999998866433 347899999 999999998886544433
Done!