Query 004777
Match_columns 731
No_of_seqs 307 out of 1493
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-191 2E-196 1642.3 63.9 691 22-715 23-714 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-156 3E-161 1303.0 41.0 607 23-713 14-623 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.4E-91 3.1E-96 754.2 18.4 297 35-340 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.8E-37 6.2E-42 354.4 9.8 290 29-327 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.2E-20 4.8E-25 206.3 13.9 263 50-343 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 1.1E-12 2.3E-17 140.9 18.9 191 29-261 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 7.3E-11 1.6E-15 138.6 26.2 163 24-221 273-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 9.9E-11 2.1E-15 144.2 18.6 263 24-342 315-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 2.9E-10 6.4E-15 139.9 18.9 153 24-221 331-489 (1027)
10 COG3250 LacZ Beta-galactosidas 99.0 4.9E-09 1.1E-13 125.2 18.8 124 23-188 280-409 (808)
11 PF00150 Cellulase: Cellulase 98.9 2.5E-08 5.4E-13 104.7 13.7 162 38-221 3-172 (281)
12 PF13364 BetaGal_dom4_5: Beta- 98.8 8.2E-09 1.8E-13 95.3 7.5 64 619-709 33-101 (111)
13 PF13364 BetaGal_dom4_5: Beta- 98.8 2.8E-08 6E-13 91.8 10.0 84 460-550 24-110 (111)
14 PF03198 Glyco_hydro_72: Gluca 98.2 1.6E-05 3.4E-10 85.1 13.6 155 25-217 7-179 (314)
15 PF02837 Glyco_hydro_2_N: Glyc 98.1 2.5E-05 5.4E-10 76.4 10.7 98 467-571 64-164 (167)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.1E-05 2.3E-10 85.1 7.8 116 81-221 3-125 (254)
17 PF13204 DUF4038: Protein of u 98.0 0.00022 4.9E-09 76.7 16.3 225 33-287 2-274 (289)
18 PLN00197 beta-amylase; Provisi 97.8 0.00022 4.8E-09 81.0 13.5 83 56-142 125-217 (573)
19 PLN02801 beta-amylase 97.8 9.5E-05 2.1E-09 83.2 10.3 83 56-142 35-127 (517)
20 TIGR03356 BGL beta-galactosida 97.8 5E-05 1.1E-09 86.0 8.3 97 58-166 54-151 (427)
21 PLN02705 beta-amylase 97.7 9.1E-05 2E-09 84.5 9.1 113 56-182 266-414 (681)
22 PLN02161 beta-amylase 97.7 0.00015 3.2E-09 81.7 10.6 83 56-142 115-207 (531)
23 PLN02905 beta-amylase 97.7 0.00012 2.7E-09 83.7 9.4 115 56-182 284-432 (702)
24 PLN02803 beta-amylase 97.7 0.0002 4.3E-09 81.1 10.5 83 56-142 105-197 (548)
25 PF01373 Glyco_hydro_14: Glyco 97.1 0.00039 8.4E-09 77.1 4.1 75 59-136 17-96 (402)
26 PF00232 Glyco_hydro_1: Glycos 97.0 0.00058 1.3E-08 78.1 4.7 97 58-166 58-156 (455)
27 PF00331 Glyco_hydro_10: Glyco 97.0 0.001 2.2E-08 72.6 5.7 156 45-222 11-179 (320)
28 COG3693 XynA Beta-1,4-xylanase 96.9 0.0035 7.6E-08 67.3 9.1 133 67-222 55-194 (345)
29 PF07745 Glyco_hydro_53: Glyco 96.9 0.0037 7.9E-08 68.5 9.0 139 61-222 27-178 (332)
30 PF14488 DUF4434: Domain of un 96.8 0.02 4.4E-07 56.7 13.0 136 53-218 15-158 (166)
31 PRK15014 6-phospho-beta-glucos 96.6 0.0046 9.9E-08 71.1 7.8 96 58-165 69-167 (477)
32 PRK09852 cryptic 6-phospho-bet 96.6 0.0049 1.1E-07 70.9 7.6 96 58-165 71-169 (474)
33 PLN02998 beta-glucosidase 96.4 0.003 6.4E-08 73.0 4.5 100 58-165 82-183 (497)
34 PRK13511 6-phospho-beta-galact 96.4 0.0085 1.8E-07 68.9 7.9 96 58-165 54-150 (469)
35 PLN02814 beta-glucosidase 96.3 0.0035 7.6E-08 72.5 4.4 96 58-165 77-174 (504)
36 COG2730 BglC Endoglucanase [Ca 96.3 0.013 2.8E-07 66.2 8.7 135 36-188 45-193 (407)
37 PRK10150 beta-D-glucuronidase; 96.3 0.025 5.5E-07 67.0 11.3 100 468-573 62-179 (604)
38 TIGR01233 lacG 6-phospho-beta- 96.2 0.011 2.5E-07 67.8 8.2 96 58-165 53-149 (467)
39 PRK09593 arb 6-phospho-beta-gl 96.1 0.0068 1.5E-07 69.8 5.4 96 58-165 73-171 (478)
40 PLN02849 beta-glucosidase 96.1 0.0055 1.2E-07 70.9 4.5 100 58-165 79-180 (503)
41 PRK09589 celA 6-phospho-beta-g 96.0 0.007 1.5E-07 69.6 5.0 100 58-165 67-169 (476)
42 PRK10340 ebgA cryptic beta-D-g 95.8 0.036 7.8E-07 69.5 10.2 94 471-573 109-206 (1021)
43 COG3867 Arabinogalactan endo-1 95.7 0.047 1E-06 58.1 9.0 115 60-187 65-182 (403)
44 PRK09525 lacZ beta-D-galactosi 95.3 0.069 1.5E-06 67.0 10.3 95 470-573 119-218 (1027)
45 PRK09936 hypothetical protein; 94.9 0.091 2E-06 56.2 8.2 58 53-116 33-91 (296)
46 PF14871 GHL6: Hypothetical gl 94.7 0.18 3.9E-06 48.2 9.0 97 63-164 5-123 (132)
47 COG2723 BglB Beta-glucosidase/ 94.3 0.04 8.7E-07 62.5 4.2 96 58-165 59-157 (460)
48 KOG2230 Predicted beta-mannosi 94.3 0.55 1.2E-05 54.0 12.9 149 34-222 328-494 (867)
49 PF02055 Glyco_hydro_30: O-Gly 93.3 0.68 1.5E-05 53.7 11.8 333 41-403 74-490 (496)
50 PF02837 Glyco_hydro_2_N: Glyc 93.2 0.099 2.1E-06 51.0 4.3 43 619-661 66-111 (167)
51 smart00812 Alpha_L_fucos Alpha 93.1 15 0.00033 41.4 21.9 248 50-349 76-338 (384)
52 smart00642 Aamy Alpha-amylase 92.2 0.39 8.4E-06 47.6 6.8 68 57-124 18-97 (166)
53 PF02638 DUF187: Glycosyl hydr 92.1 0.6 1.3E-05 51.0 8.9 118 56-183 17-161 (311)
54 TIGR01515 branching_enzym alph 91.1 2.6 5.6E-05 50.4 13.5 57 61-117 159-226 (613)
55 PLN02447 1,4-alpha-glucan-bran 90.7 5.8 0.00013 48.3 15.8 62 57-119 250-322 (758)
56 PRK05402 glycogen branching en 90.6 2.3 5E-05 51.8 12.6 51 64-117 272-335 (726)
57 PF05913 DUF871: Bacterial pro 89.4 0.62 1.3E-05 51.8 6.0 71 46-122 2-72 (357)
58 PRK14706 glycogen branching en 88.9 7.7 0.00017 46.6 14.9 51 64-117 174-237 (639)
59 COG3934 Endo-beta-mannanase [C 88.5 0.38 8.3E-06 54.4 3.5 157 35-209 3-168 (587)
60 cd00019 AP2Ec AP endonuclease 87.3 4.8 0.0001 42.7 10.9 98 58-184 10-108 (279)
61 PRK12568 glycogen branching en 87.2 10 0.00023 46.1 14.7 55 62-119 274-341 (730)
62 COG1649 Uncharacterized protei 86.9 2.9 6.4E-05 47.3 9.2 123 55-187 61-210 (418)
63 PRK14705 glycogen branching en 86.8 10 0.00022 48.7 14.8 56 62-117 770-835 (1224)
64 TIGR00542 hxl6Piso_put hexulos 86.5 8.2 0.00018 40.9 12.1 131 57-215 15-149 (279)
65 PRK13210 putative L-xylulose 5 86.1 6 0.00013 41.8 10.9 132 58-215 16-149 (284)
66 PRK09441 cytoplasmic alpha-amy 85.8 1.3 2.7E-05 51.3 5.9 60 58-117 19-101 (479)
67 PRK01060 endonuclease IV; Prov 84.2 19 0.0004 38.1 13.5 93 60-181 14-109 (281)
68 PF01229 Glyco_hydro_39: Glyco 84.2 2.1 4.7E-05 49.5 6.9 69 47-118 28-105 (486)
69 PF01261 AP_endonuc_2: Xylose 83.1 1.7 3.8E-05 43.0 4.9 125 64-215 1-128 (213)
70 PF00128 Alpha-amylase: Alpha 83.1 1.2 2.5E-05 47.0 3.8 57 61-117 7-72 (316)
71 PRK12313 glycogen branching en 82.4 2.2 4.8E-05 51.1 6.2 51 64-117 177-240 (633)
72 PF14307 Glyco_tran_WbsX: Glyc 81.6 15 0.00033 40.6 12.0 137 55-221 55-197 (345)
73 TIGR02402 trehalose_TreZ malto 81.3 2.4 5.3E-05 49.8 5.9 54 61-117 114-180 (542)
74 TIGR02631 xylA_Arthro xylose i 80.7 19 0.0004 40.6 12.4 89 58-165 32-125 (382)
75 PRK09856 fructoselysine 3-epim 79.0 29 0.00062 36.5 12.6 130 59-215 14-145 (275)
76 PF02679 ComA: (2R)-phospho-3- 78.5 2.4 5.2E-05 44.7 4.1 52 57-118 83-134 (244)
77 TIGR02403 trehalose_treC alpha 77.7 3.2 6.9E-05 48.8 5.3 60 56-117 25-95 (543)
78 TIGR03234 OH-pyruv-isom hydrox 77.1 46 0.00099 34.6 13.4 43 59-115 15-57 (254)
79 PRK13209 L-xylulose 5-phosphat 77.0 21 0.00046 37.8 11.0 129 59-215 22-154 (283)
80 PRK09997 hydroxypyruvate isome 76.6 38 0.00083 35.4 12.6 49 50-115 10-58 (258)
81 COG0296 GlgB 1,4-alpha-glucan 76.1 5.6 0.00012 47.4 6.7 58 56-116 163-233 (628)
82 smart00518 AP2Ec AP endonuclea 75.8 35 0.00076 35.8 12.2 101 48-181 3-104 (273)
83 TIGR02104 pulA_typeI pullulana 75.7 4.5 9.7E-05 48.3 5.9 55 62-117 168-249 (605)
84 COG3589 Uncharacterized conser 75.6 8.4 0.00018 42.3 7.3 72 46-124 4-76 (360)
85 PLN02960 alpha-amylase 75.4 5 0.00011 49.4 6.2 57 61-117 420-486 (897)
86 PRK09505 malS alpha-amylase; R 73.5 6.1 0.00013 47.8 6.2 58 60-117 232-312 (683)
87 PRK10785 maltodextrin glucosid 73.1 6.6 0.00014 46.8 6.4 58 60-117 181-246 (598)
88 cd06593 GH31_xylosidase_YicI Y 72.7 8.7 0.00019 41.6 6.8 69 55-123 21-92 (308)
89 PRK09989 hypothetical protein; 72.5 35 0.00075 35.8 11.1 42 60-115 17-58 (258)
90 PF13199 Glyco_hydro_66: Glyco 72.4 6 0.00013 46.6 5.7 81 56-136 116-211 (559)
91 TIGR01531 glyc_debranch glycog 72.4 12 0.00025 48.4 8.5 92 56-153 130-236 (1464)
92 PRK10933 trehalose-6-phosphate 72.3 7 0.00015 46.2 6.3 57 58-117 33-101 (551)
93 PF06832 BiPBP_C: Penicillin-B 72.3 5.9 0.00013 34.8 4.4 50 494-551 34-84 (89)
94 TIGR02456 treS_nterm trehalose 71.4 5.3 0.00012 46.9 5.1 58 56-116 26-95 (539)
95 PF13200 DUF4015: Putative gly 70.9 9.5 0.00021 41.9 6.5 62 56-117 11-81 (316)
96 PF03659 Glyco_hydro_71: Glyco 69.8 21 0.00046 40.3 9.2 54 55-117 14-67 (386)
97 TIGR03849 arch_ComA phosphosul 69.4 9.4 0.0002 40.2 5.8 52 58-119 71-122 (237)
98 cd06592 GH31_glucosidase_KIAA1 69.3 43 0.00093 36.3 11.2 69 53-124 25-97 (303)
99 PF08531 Bac_rhamnosid_N: Alph 68.8 20 0.00043 35.6 7.8 56 494-550 6-68 (172)
100 KOG0626 Beta-glucosidase, lact 68.7 7.6 0.00017 45.1 5.4 113 59-181 92-208 (524)
101 PLN02361 alpha-amylase 67.7 11 0.00023 42.8 6.3 57 61-117 32-96 (401)
102 KOG0496 Beta-galactosidase [Ca 67.1 2.7 5.9E-05 49.6 1.4 30 310-339 325-354 (649)
103 cd06589 GH31 The enzymes of gl 67.0 95 0.0021 32.9 13.0 65 56-121 22-90 (265)
104 PF01791 DeoC: DeoC/LacD famil 67.0 2 4.3E-05 44.7 0.3 53 61-116 79-131 (236)
105 PRK14511 maltooligosyl trehalo 64.4 14 0.00029 45.9 6.6 61 55-119 17-91 (879)
106 cd04908 ACT_Bt0572_1 N-termina 63.3 23 0.00051 28.9 6.0 55 57-115 12-66 (66)
107 PRK14510 putative bifunctional 63.2 10 0.00022 49.0 5.5 56 62-117 191-267 (1221)
108 cd06595 GH31_xylosidase_XylS-l 62.5 86 0.0019 33.8 11.8 71 50-120 14-97 (292)
109 PF11324 DUF3126: Protein of u 62.0 21 0.00046 29.9 5.3 31 500-530 25-57 (63)
110 PF02065 Melibiase: Melibiase; 62.0 1.1E+02 0.0023 34.8 12.8 90 50-139 50-148 (394)
111 TIGR02100 glgX_debranch glycog 61.6 11 0.00024 45.8 5.2 55 63-117 189-265 (688)
112 PRK12677 xylose isomerase; Pro 60.9 56 0.0012 36.9 10.4 89 59-165 32-124 (384)
113 TIGR02401 trehalose_TreY malto 60.7 18 0.00039 44.6 6.8 64 56-119 14-87 (825)
114 COG3623 SgaU Putative L-xylulo 60.7 35 0.00076 35.9 7.8 88 57-165 17-106 (287)
115 COG1306 Uncharacterized conser 58.3 21 0.00046 38.7 5.9 64 50-117 70-144 (400)
116 PRK03705 glycogen debranching 57.2 16 0.00035 44.1 5.6 55 63-117 184-262 (658)
117 cd06591 GH31_xylosidase_XylS X 56.1 25 0.00054 38.5 6.4 66 56-122 22-91 (319)
118 PLN00196 alpha-amylase; Provis 56.0 24 0.00052 40.4 6.4 57 61-117 47-112 (428)
119 cd06565 GH20_GcnA-like Glycosy 55.9 73 0.0016 34.6 9.9 67 56-125 15-88 (301)
120 PRK14507 putative bifunctional 55.0 24 0.00052 46.8 6.9 61 56-119 756-829 (1693)
121 PRK13398 3-deoxy-7-phosphohept 54.8 51 0.0011 35.3 8.3 77 35-117 20-98 (266)
122 PRK08673 3-deoxy-7-phosphohept 54.6 38 0.00083 37.6 7.5 76 35-117 86-164 (335)
123 PRK14582 pgaB outer membrane N 54.5 57 0.0012 39.5 9.4 110 58-185 334-467 (671)
124 PF12876 Cellulase-like: Sugar 53.9 17 0.00038 31.8 3.9 48 172-219 6-62 (88)
125 PF08308 PEGA: PEGA domain; I 53.7 12 0.00025 31.3 2.6 46 495-552 3-48 (71)
126 cd06598 GH31_transferase_CtsZ 52.4 33 0.00072 37.5 6.6 67 56-122 22-95 (317)
127 TIGR02102 pullulan_Gpos pullul 52.3 23 0.00051 45.1 6.0 21 97-117 555-575 (1111)
128 smart00481 POLIIIAc DNA polyme 51.6 46 0.00099 27.3 5.9 44 60-116 17-60 (67)
129 cd06602 GH31_MGAM_SI_GAA This 51.5 33 0.00071 37.9 6.5 74 50-124 13-93 (339)
130 PRK09875 putative hydrolase; P 51.3 1.1E+02 0.0024 33.3 10.2 89 28-136 7-95 (292)
131 KOG2024 Beta-Glucuronidase GUS 50.0 24 0.00052 37.7 4.7 57 459-516 73-132 (297)
132 cd06418 GH25_BacA-like BacA is 49.9 65 0.0014 33.3 7.9 90 56-167 50-140 (212)
133 cd06547 GH85_ENGase Endo-beta- 49.6 32 0.0007 38.1 6.0 114 74-218 32-147 (339)
134 cd06603 GH31_GANC_GANAB_alpha 49.3 37 0.0008 37.4 6.4 68 56-124 22-91 (339)
135 TIGR00677 fadh2_euk methylenet 48.1 67 0.0015 34.6 8.0 108 44-165 130-250 (281)
136 cd06600 GH31_MGAM-like This fa 47.2 42 0.00091 36.7 6.4 72 50-122 13-89 (317)
137 PF14307 Glyco_tran_WbsX: Glyc 46.9 3.3E+02 0.0071 30.2 13.4 43 32-77 150-194 (345)
138 TIGR02455 TreS_stutzeri trehal 46.6 45 0.00097 40.1 6.7 76 56-135 76-176 (688)
139 smart00854 PGA_cap Bacterial c 46.3 1.5E+02 0.0031 30.9 10.0 49 53-114 59-107 (239)
140 cd06599 GH31_glycosidase_Aec37 45.8 54 0.0012 35.8 7.0 66 57-122 28-98 (317)
141 PRK09432 metF 5,10-methylenete 45.3 64 0.0014 35.1 7.4 88 63-166 168-266 (296)
142 TIGR00419 tim triosephosphate 45.0 40 0.00086 34.8 5.4 44 64-117 74-117 (205)
143 cd06601 GH31_lyase_GLase GLase 44.7 1.2E+02 0.0027 33.5 9.6 72 50-122 13-89 (332)
144 PRK08645 bifunctional homocyst 44.1 74 0.0016 38.2 8.3 109 41-165 461-578 (612)
145 TIGR02103 pullul_strch alpha-1 43.5 40 0.00086 42.2 6.0 21 97-117 404-424 (898)
146 cd06604 GH31_glucosidase_II_Ma 43.5 53 0.0011 36.2 6.5 73 50-123 13-90 (339)
147 PF14587 Glyco_hydr_30_2: O-Gl 42.8 1.2E+02 0.0026 34.4 9.0 122 86-222 93-227 (384)
148 PRK00042 tpiA triosephosphate 42.4 41 0.00088 35.7 5.2 49 64-118 79-127 (250)
149 cd06568 GH20_SpHex_like A subg 41.4 67 0.0015 35.4 6.9 62 56-117 16-95 (329)
150 COG0366 AmyA Glycosidases [Car 41.1 33 0.00071 39.1 4.6 56 62-117 33-97 (505)
151 PRK09856 fructoselysine 3-epim 41.0 40 0.00087 35.4 4.9 59 58-120 90-153 (275)
152 cd00311 TIM Triosephosphate is 40.6 52 0.0011 34.8 5.6 49 64-118 77-125 (242)
153 PF14683 CBM-like: Polysacchar 40.3 31 0.00066 34.4 3.6 72 644-727 91-162 (167)
154 PF14701 hDGE_amylase: glucano 40.1 99 0.0022 35.4 8.0 89 56-153 20-128 (423)
155 cd02742 GH20_hexosaminidase Be 39.1 73 0.0016 34.6 6.6 60 55-117 13-92 (303)
156 cd06564 GH20_DspB_LnbB-like Gl 39.0 1E+02 0.0022 33.8 7.8 59 56-117 15-102 (326)
157 COG5520 O-Glycosyl hydrolase [ 38.8 6.2E+02 0.013 28.6 13.4 86 106-212 111-206 (433)
158 PF02228 Gag_p19: Major core p 38.4 15 0.00032 31.9 0.9 39 56-111 20-58 (92)
159 TIGR00433 bioB biotin syntheta 38.3 47 0.001 35.4 5.0 52 61-115 123-176 (296)
160 PRK09267 flavodoxin FldA; Vali 37.7 2.5E+02 0.0053 27.3 9.6 74 38-114 44-117 (169)
161 PF01055 Glyco_hydro_31: Glyco 37.7 70 0.0015 36.3 6.6 69 56-125 41-111 (441)
162 cd01299 Met_dep_hydrolase_A Me 37.7 81 0.0018 34.2 6.8 59 56-117 118-180 (342)
163 cd06563 GH20_chitobiase-like T 37.2 1.3E+02 0.0029 33.4 8.4 60 55-117 15-106 (357)
164 PF08924 DUF1906: Domain of un 37.0 84 0.0018 30.1 6.0 91 56-166 36-127 (136)
165 cd06545 GH18_3CO4_chitinase Th 37.0 1.2E+02 0.0026 31.7 7.8 94 88-210 36-130 (253)
166 PLN02877 alpha-amylase/limit d 36.7 65 0.0014 40.6 6.4 21 97-117 466-486 (970)
167 PF10566 Glyco_hydro_97: Glyco 36.0 1.2E+02 0.0027 32.6 7.6 116 55-178 29-160 (273)
168 PF01261 AP_endonuc_2: Xylose 35.4 41 0.0009 33.0 3.8 64 57-120 70-135 (213)
169 COG1735 Php Predicted metal-de 34.9 1.6E+02 0.0034 32.4 8.1 153 27-222 16-173 (316)
170 cd06416 GH25_Lys1-like Lys-1 i 34.5 1.2E+02 0.0026 30.5 6.9 89 46-137 54-157 (196)
171 PRK13210 putative L-xylulose 5 33.7 65 0.0014 33.9 5.2 59 58-117 94-153 (284)
172 PLN02784 alpha-amylase 33.4 59 0.0013 40.4 5.2 56 61-117 524-588 (894)
173 COG1523 PulA Type II secretory 33.4 57 0.0012 39.7 5.0 55 63-117 205-285 (697)
174 PF07691 PA14: PA14 domain; I 33.2 2E+02 0.0043 26.7 7.9 70 472-549 47-122 (145)
175 COG3320 Putative dehydrogenase 32.7 22 0.00047 39.9 1.3 93 41-136 88-214 (382)
176 cd06597 GH31_transferase_CtsY 32.7 1.1E+02 0.0023 34.0 6.8 73 50-122 13-110 (340)
177 PRK12331 oxaloacetate decarbox 32.1 95 0.0021 35.9 6.4 56 50-117 88-143 (448)
178 TIGR00676 fadh2 5,10-methylene 31.9 2.1E+02 0.0046 30.5 8.7 106 43-165 125-246 (272)
179 PRK09997 hydroxypyruvate isome 31.6 69 0.0015 33.5 4.8 60 58-117 85-144 (258)
180 PLN03059 beta-galactosidase; P 31.3 88 0.0019 38.8 6.2 40 472-518 620-659 (840)
181 cd02940 DHPD_FMN Dihydropyrimi 31.3 3.2E+02 0.007 29.5 10.1 29 56-88 111-139 (299)
182 cd02810 DHOD_DHPD_FMN Dihydroo 31.2 99 0.0022 32.9 6.1 60 56-119 109-171 (289)
183 PRK14565 triosephosphate isome 31.2 80 0.0017 33.3 5.2 48 64-118 78-126 (237)
184 cd08560 GDPD_EcGlpQ_like_1 Gly 31.1 1.3E+02 0.0027 33.8 7.0 53 59-117 246-298 (356)
185 PF13380 CoA_binding_2: CoA bi 31.1 1.1E+02 0.0023 28.4 5.4 44 55-114 63-106 (116)
186 cd00544 CobU Adenosylcobinamid 31.1 2.4E+02 0.0053 27.9 8.4 50 153-210 101-150 (169)
187 TIGR02635 RhaI_grampos L-rhamn 31.0 8E+02 0.017 27.8 13.3 158 26-217 10-173 (378)
188 PRK13209 L-xylulose 5-phosphat 30.9 2.8E+02 0.0061 29.1 9.5 104 54-187 53-161 (283)
189 PRK05265 pyridoxine 5'-phospha 30.9 79 0.0017 33.4 5.0 49 57-123 112-161 (239)
190 COG5309 Exo-beta-1,3-glucanase 30.5 4.9E+02 0.011 28.2 10.7 117 56-222 61-179 (305)
191 cd00537 MTHFR Methylenetetrahy 30.3 1.6E+02 0.0034 31.3 7.4 103 49-165 138-249 (274)
192 PTZ00372 endonuclease 4-like p 29.8 6.3E+02 0.014 29.0 12.2 78 62-165 145-228 (413)
193 COG0149 TpiA Triosephosphate i 29.8 96 0.0021 33.1 5.4 47 65-118 82-129 (251)
194 PRK14566 triosephosphate isome 29.6 94 0.002 33.3 5.4 74 38-118 62-136 (260)
195 PRK15492 triosephosphate isome 29.4 98 0.0021 33.1 5.5 49 64-118 87-135 (260)
196 cd04740 DHOD_1B_like Dihydroor 29.2 1.3E+02 0.0028 32.3 6.5 60 56-119 100-163 (296)
197 COG2876 AroA 3-deoxy-D-arabino 29.2 2E+02 0.0043 31.1 7.5 73 56-159 57-131 (286)
198 TIGR00587 nfo apurinic endonuc 29.2 3.4E+02 0.0073 28.8 9.7 83 61-165 14-98 (274)
199 PRK10076 pyruvate formate lyas 28.9 1.7E+02 0.0036 30.3 7.0 125 57-215 53-209 (213)
200 PLN02389 biotin synthase 28.8 71 0.0015 36.0 4.6 51 60-113 177-229 (379)
201 cd06562 GH20_HexA_HexB-like Be 28.6 2E+02 0.0043 31.9 8.0 63 55-117 15-90 (348)
202 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.6 1.3E+02 0.0029 32.1 6.5 49 55-115 88-136 (275)
203 PTZ00333 triosephosphate isome 28.4 1.1E+02 0.0024 32.7 5.6 48 65-118 83-130 (255)
204 PRK06703 flavodoxin; Provision 28.3 3.3E+02 0.0072 25.9 8.6 103 38-165 46-148 (151)
205 PLN02429 triosephosphate isome 27.9 94 0.002 34.2 5.2 48 64-118 140-188 (315)
206 TIGR00542 hxl6Piso_put hexulos 27.9 99 0.0021 32.7 5.3 55 59-117 95-153 (279)
207 TIGR03234 OH-pyruv-isom hydrox 27.8 82 0.0018 32.7 4.6 58 58-117 84-143 (254)
208 KOG4039 Serine/threonine kinas 27.7 84 0.0018 32.0 4.3 30 48-77 99-128 (238)
209 PF01075 Glyco_transf_9: Glyco 27.6 47 0.001 34.1 2.8 77 40-119 105-194 (247)
210 KOG1412 Aspartate aminotransfe 27.3 93 0.002 34.3 4.8 116 57-222 132-250 (410)
211 cd07381 MPP_CapA CapA and rela 27.2 4.4E+02 0.0096 27.1 10.0 126 61-215 67-210 (239)
212 COG1453 Predicted oxidoreducta 27.1 2.7E+02 0.0059 31.4 8.5 93 37-165 7-107 (391)
213 TIGR01698 PUNP purine nucleoti 26.9 96 0.0021 32.7 4.9 41 37-77 47-88 (237)
214 PF03102 NeuB: NeuB family; I 26.2 89 0.0019 33.1 4.5 115 54-208 52-171 (241)
215 PLN02231 alanine transaminase 26.1 1.6E+02 0.0034 34.8 7.0 60 53-116 251-310 (534)
216 COG2179 Predicted hydrolase of 25.9 1.2E+02 0.0026 30.4 5.0 45 63-116 19-68 (175)
217 PLN02450 1-aminocyclopropane-1 25.9 2E+02 0.0044 33.1 7.8 60 53-116 171-230 (468)
218 PRK14040 oxaloacetate decarbox 25.7 1.2E+02 0.0027 36.3 6.0 54 50-115 89-142 (593)
219 PRK14567 triosephosphate isome 25.7 1.2E+02 0.0027 32.3 5.4 48 65-118 79-126 (253)
220 cd04882 ACT_Bt0572_2 C-termina 25.6 1.3E+02 0.0029 23.7 4.5 55 57-113 10-64 (65)
221 TIGR01361 DAHP_synth_Bsub phos 25.4 1.5E+02 0.0032 31.7 6.0 81 28-117 13-96 (260)
222 PRK12858 tagatose 1,6-diphosph 25.1 63 0.0014 35.9 3.3 66 49-117 98-163 (340)
223 PRK10966 exonuclease subunit S 25.1 5.5E+02 0.012 29.2 10.9 86 42-139 41-135 (407)
224 PLN02561 triosephosphate isome 24.5 1.4E+02 0.0029 32.0 5.5 49 64-118 81-129 (253)
225 COG3684 LacD Tagatose-1,6-bisp 24.5 55 0.0012 35.0 2.5 52 63-117 116-167 (306)
226 PF04914 DltD_C: DltD C-termin 24.5 56 0.0012 31.3 2.4 51 97-166 36-87 (130)
227 TIGR03700 mena_SCO4494 putativ 24.3 58 0.0013 36.1 2.8 51 60-113 149-204 (351)
228 PF08306 Glyco_hydro_98M: Glyc 24.0 76 0.0016 34.9 3.5 59 44-113 104-169 (324)
229 KOG0259 Tyrosine aminotransfer 23.8 86 0.0019 35.4 3.9 64 49-116 173-238 (447)
230 COG1891 Uncharacterized protei 23.8 25 0.00054 35.4 -0.2 66 43-116 116-186 (235)
231 PRK13361 molybdenum cofactor b 23.7 2.1E+02 0.0046 31.3 7.0 54 59-116 102-160 (329)
232 KOG3625 Alpha amylase [Carbohy 23.5 74 0.0016 39.5 3.6 76 56-140 140-235 (1521)
233 PRK04302 triosephosphate isome 23.5 1.3E+02 0.0029 31.0 5.2 60 50-119 62-123 (223)
234 PRK10658 putative alpha-glucos 23.4 2.3E+02 0.0049 34.6 7.7 65 56-122 281-350 (665)
235 PLN02763 hydrolase, hydrolyzin 23.3 2.2E+02 0.0048 36.2 7.7 74 50-124 190-268 (978)
236 COG0167 PyrD Dihydroorotate de 23.2 8.5E+02 0.018 26.8 11.4 128 56-223 107-250 (310)
237 PTZ00377 alanine aminotransfer 23.2 2.2E+02 0.0047 32.9 7.3 60 53-116 198-257 (481)
238 PF07755 DUF1611: Protein of u 23.1 55 0.0012 35.8 2.2 60 43-117 35-95 (301)
239 cd06569 GH20_Sm-chitobiase-lik 23.0 2.2E+02 0.0047 32.9 7.2 73 32-117 6-117 (445)
240 PRK07094 biotin synthase; Prov 22.9 71 0.0015 34.7 3.1 50 61-113 129-181 (323)
241 KOG1065 Maltase glucoamylase a 22.8 1.6E+02 0.0035 36.3 6.2 68 50-122 300-376 (805)
242 TIGR03128 RuMP_HxlA 3-hexulose 22.7 1.7E+02 0.0036 29.5 5.6 52 48-116 57-108 (206)
243 PLN02607 1-aminocyclopropane-1 22.6 2.5E+02 0.0054 32.2 7.6 60 53-116 180-239 (447)
244 PF02811 PHP: PHP domain; Int 22.2 1.6E+02 0.0036 28.0 5.3 44 60-116 18-61 (175)
245 PF08821 CGGC: CGGC domain; I 22.1 2.7E+02 0.0058 25.8 6.3 58 50-116 44-105 (107)
246 COG2884 FtsE Predicted ATPase 22.1 79 0.0017 32.6 3.0 30 632-661 36-70 (223)
247 COG2100 Predicted Fe-S oxidore 22.1 5.6E+02 0.012 28.6 9.5 122 62-219 205-335 (414)
248 PF00121 TIM: Triosephosphate 22.1 69 0.0015 33.9 2.7 49 64-118 77-125 (244)
249 cd03789 GT1_LPS_heptosyltransf 22.0 1.4E+02 0.0029 31.5 5.0 88 43-135 124-223 (279)
250 PRK10422 lipopolysaccharide co 21.9 1.7E+02 0.0037 32.1 5.9 64 53-119 197-273 (352)
251 PRK02412 aroD 3-dehydroquinate 21.9 1.8E+02 0.0039 30.8 5.8 33 46-78 138-172 (253)
252 cd00019 AP2Ec AP endonuclease 21.7 95 0.002 32.8 3.8 57 58-118 85-144 (279)
253 KOG3833 Uncharacterized conser 21.7 1.1E+02 0.0023 33.7 4.0 53 59-117 444-499 (505)
254 cd06594 GH31_glucosidase_YihQ 21.4 3.1E+02 0.0067 30.0 7.7 68 56-123 21-97 (317)
255 cd07944 DRE_TIM_HOA_like 4-hyd 21.3 2E+02 0.0043 30.7 6.1 66 53-118 15-81 (266)
256 PTZ00372 endonuclease 4-like p 21.3 5.9E+02 0.013 29.2 10.0 83 34-118 149-240 (413)
257 PRK05660 HemN family oxidoredu 21.3 1E+02 0.0023 34.5 4.1 59 46-112 96-158 (378)
258 TIGR00539 hemN_rel putative ox 21.2 1.1E+02 0.0023 34.0 4.2 59 46-112 89-151 (360)
259 cd04739 DHOD_like Dihydroorota 20.9 3.5E+02 0.0075 29.7 8.0 68 46-119 102-172 (325)
260 KOG0470 1,4-alpha-glucan branc 20.7 1E+02 0.0022 37.5 3.9 52 61-117 258-331 (757)
261 PRK07259 dihydroorotate dehydr 20.5 2.2E+02 0.0048 30.6 6.3 59 56-118 102-165 (301)
262 PF00282 Pyridoxal_deC: Pyrido 20.5 1.6E+02 0.0036 32.9 5.5 71 39-116 139-230 (373)
263 PRK10569 NAD(P)H-dependent FMN 20.5 2.3E+02 0.0049 28.7 6.0 82 42-134 2-85 (191)
264 PRK13396 3-deoxy-7-phosphohept 20.4 5.5E+02 0.012 28.8 9.4 76 35-117 93-172 (352)
265 PF06230 DUF1009: Protein of u 20.4 2.1E+02 0.0046 29.8 5.8 43 60-114 171-213 (214)
266 TIGR02109 PQQ_syn_pqqE coenzym 20.2 2.7E+02 0.0059 30.6 7.1 53 53-116 35-87 (358)
267 cd07944 DRE_TIM_HOA_like 4-hyd 20.0 1.5E+02 0.0033 31.5 4.9 56 46-117 74-129 (266)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1e-191 Score=1642.34 Aligned_cols=691 Identities=66% Similarity=1.198 Sum_probs=640.6
Q ss_pred ccccceeEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHH
Q 004777 22 ELIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVR 101 (731)
Q Consensus 22 ~~~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~ 101 (731)
+.-...+|+||+++|+|||||++|+||+|||||+||++|+|||+||||+|||||+||||||+|||+||+|||+|++||++
T Consensus 23 ~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~ 102 (840)
T PLN03059 23 VSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVK 102 (840)
T ss_pred hccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHH
Confidence 34446689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 102 FIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 102 fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
||++|+|+||||||||||||||||++||+|+||+++|+|++||+|++|+++|++|+++|+++|++++++++|||||||+|
T Consensus 103 Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 103 FIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred HHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred ccccccCCcccCCcchHHHHHHHHHHHhcCCCCcceeeeCCCCCCCccccCCCCCccCCCCCCCCCCCceeeeccccccc
Q 004777 182 IENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFT 261 (731)
Q Consensus 182 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~~~~~~~~p~~P~~~tE~~~Gwf~ 261 (731)
||||||++..+++.+|++||+||++|++++|++|||+||++.++++++++|||+.+|+.|.+.++.+|+||||||+|||+
T Consensus 183 IENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~ 262 (840)
T PLN03059 183 IENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYT 262 (840)
T ss_pred ecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHh
Confidence 99999998777777899999999999999999999999999888889999999999999988878899999999999999
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCceeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHH
Q 004777 262 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAI 341 (731)
Q Consensus 262 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~~Ky~~lr~l~~~i 341 (731)
+||++++.|+++|+|++++++|++|+|++||||||||||||||||+++++|||||||||+|+|++|+|||.+||++|.++
T Consensus 263 ~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~ 342 (840)
T PLN03059 263 EFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAI 342 (840)
T ss_pred hcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999768999999999999
Q ss_pred HhhhccccCCCCccccCCCccceeeeecCCcceeeEeeccCCccceEEEeCCeeeecCCCceeecCCCcceeeccceeee
Q 004777 342 KLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAV 421 (731)
Q Consensus 342 ~~~~~~l~~~~p~~~~l~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~~~~~ta~v~~ 421 (731)
+.++++|+..+|....||+.+++++|...+ .|++|+.|++.+...+|+|+|++|.||+|||||||||++++|||+++++
T Consensus 343 ~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~ 421 (840)
T PLN03059 343 KLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGA 421 (840)
T ss_pred HhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeecccccc
Confidence 999988888888888999999999999766 7999999999888999999999999999999999999999999999999
Q ss_pred eccccccccCCccccccccccccccccCCCCcccccchhhhccCCCCCccEEEEEEEeecCCCcccccCCCCceeeeCCc
Q 004777 422 QHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESA 501 (731)
Q Consensus 422 ~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~mEql~~t~d~~GyllYrt~i~~~~~~~~~~~g~~~~L~i~~~ 501 (731)
|++.+++.+. ...+.|+++.|++.+...+.+++++.++||+++|+|.+||+||||+|....++..++++.+++|+|.++
T Consensus 422 q~~~~~~~~~-~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~ 500 (840)
T PLN03059 422 QSSQMKMNPV-GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSA 500 (840)
T ss_pred ccceeecccc-cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEccc
Confidence 9776655433 245689999999554324467888999999999999999999999998876665556778899999999
Q ss_pred ceEEEEEECCEEEEEEEcccccceeEEeecccccCCCCEEEEEEecCCccccCCCCCcccccccccEEeccccCCCccCc
Q 004777 502 GHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLT 581 (731)
Q Consensus 502 ~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~n~L~ILvEn~Gr~NyG~~~~~~~KGI~G~V~l~g~~~g~~~Lt 581 (731)
+|++||||||+++|+++++..+..+.++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.++.+|+
T Consensus 501 ~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls 580 (840)
T PLN03059 501 GHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLS 580 (840)
T ss_pred CcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecc
Confidence 99999999999999999988777889988888998999999999999999999999999999999999999888888999
Q ss_pred cCCcEEeecCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEeeCCCceEEEEEcCeeeeeee
Q 004777 582 WQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYW 661 (731)
Q Consensus 582 ~~~W~~~~~L~gE~l~~~~~~~~~~~~W~~~s~~~~~~~~p~fYk~tF~ip~~~dptfLd~~g~gKG~vwVNG~nLGRYW 661 (731)
++.|.|+++|.||.++|+.+++..+++|.+.+..+. .++|+|||++|++|++.|||||||++||||+|||||+||||||
T Consensus 581 ~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW 659 (840)
T PLN03059 581 GWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHW 659 (840)
T ss_pred cCccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCccccccc
Confidence 889999999999999999876666789976543333 4579999999999999999999999999999999999999999
Q ss_pred cccc-cCCCCCCCCCCCcCCccccCCCCCCcceeeecCccccccCceEEEecCCC
Q 004777 662 MAYA-KGDCKTCSYAGTFRPINCQRRCGHPTQRWYYLKTNEYCTDIWIDVLDEPC 715 (731)
Q Consensus 662 p~~~-~~~~~~c~y~G~y~~~~c~~~cg~PsQ~~YhVP~~~L~~~~~~~~~~~~~ 715 (731)
+..+ .++|+.|+|+|+|+++||+||||+|||++|||||+||+.+.|..|+.|-.
T Consensus 660 ~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~ 714 (840)
T PLN03059 660 PAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEW 714 (840)
T ss_pred ccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEec
Confidence 8863 44459999999999999999999999999999999999999888776543
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-156 Score=1302.98 Aligned_cols=607 Identities=60% Similarity=1.081 Sum_probs=561.8
Q ss_pred cccceeEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHH
Q 004777 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (731)
Q Consensus 23 ~~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~f 102 (731)
+++++.|+||+++|++||+|++++||+|||+|++|++|+|+|+|+|++|+|+|+||||||.|||+||+|||+|+.||++|
T Consensus 14 ~~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkF 93 (649)
T KOG0496|consen 14 SGSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKF 93 (649)
T ss_pred ccceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHH
Confidence 44489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 004777 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (731)
Q Consensus 103 l~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 182 (731)
|++|+++|||||||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|++++| +|+++|||||||+||
T Consensus 94 ikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QI 171 (649)
T KOG0496|consen 94 IKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQI 171 (649)
T ss_pred HHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccccCCcccCCcchHHHHHHHHHHHhcCCCCcceeeeCCCCCCCccccCCCCCcc-CCCC-CCCCCCCceeeecccccc
Q 004777 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFS-PNKPYKPTLWTEAWSGWF 260 (731)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~v~~~~ng~~~-~~~~-~~~p~~P~~~tE~~~Gwf 260 (731)
|||||.+...|++.+++|++|-+.|+...+.++||+||.+.++|+.++++||+++| +.|. +++|++|+||||||+|||
T Consensus 172 ENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf 251 (649)
T KOG0496|consen 172 ENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWF 251 (649)
T ss_pred echhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchh
Confidence 99999988778889999999999999999999999999999999999999999999 8888 999999999999999999
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhCCceeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHH
Q 004777 261 TEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEA 340 (731)
Q Consensus 261 ~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~~Ky~~lr~l~~~ 340 (731)
++||++++.|++|+++..+++|+++|+|++||||||||||||++|| ++.+|||||||||| |..++|||.|+|.+|..
T Consensus 252 ~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts 328 (649)
T KOG0496|consen 252 THWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTS 328 (649)
T ss_pred hhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhh
Confidence 9999999999999999999999999999999999999999999998 99999999999999 99999999999999999
Q ss_pred HHhhhccccCCCCccccCCCccceeeeecCCcceeeEeeccCCccceEEEeCCeeeecCCCceeecCCCcceeeccceee
Q 004777 341 IKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVA 420 (731)
Q Consensus 341 i~~~~~~l~~~~p~~~~l~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~~~~~ta~v~ 420 (731)
++.+++.+..+++...++++.+ +.|++|+.|++....+.+.|++..|.+|+|+|+|+|||++++|||+++.
T Consensus 329 ~d~~ep~lv~gd~~~~kyg~~~---------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~ 399 (649)
T KOG0496|consen 329 YDYCEPALVAGDITTAKYGNLR---------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVM 399 (649)
T ss_pred hhhcCccccccCcccccccchh---------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccc
Confidence 9999999888876655555443 4599999999998889999999999999999999999999999999875
Q ss_pred eeccccccccCCccccccccccccccccCCCCcccccchhhhccCCCCCccEEEEEEEeecCCCcccccCCCCceeeeC-
Q 004777 421 VQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVE- 499 (731)
Q Consensus 421 ~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~mEql~~t~d~~GyllYrt~i~~~~~~~~~~~g~~~~L~i~- 499 (731)
++ |....||++ +|..++ .+|+++|++.++.+.+++ ..|+|.
T Consensus 400 ~~---------------~~~~~e~~~-------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~l 441 (649)
T KOG0496|consen 400 AQ---------------WISFTEPIP-------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPL 441 (649)
T ss_pred cc---------------cccccCCCc-------------cccccC---cceEEEEEEeeccccCCC-------ceEeecc
Confidence 43 555555544 455544 788999999998765552 457888
Q ss_pred CcceEEEEEECCEEEEEEEcccccceeEEeecccccCCCCEEEEEEecCCccccCCCCCcccccccccEEeccccCCCcc
Q 004777 500 SAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKD 579 (731)
Q Consensus 500 ~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~n~L~ILvEn~Gr~NyG~~~~~~~KGI~G~V~l~g~~~g~~~ 579 (731)
+++|++||||||+++|+++++..+..+.+..++.|+.|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++
T Consensus 442 s~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~ 516 (649)
T KOG0496|consen 442 SLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----ID 516 (649)
T ss_pred cccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ec
Confidence 9999999999999999999988778889999999999999999999999999999 889999999999999986 57
Q ss_pred CccCCcEEeecCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEeeCCCceEEEEEcCeeeee
Q 004777 580 LTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGR 659 (731)
Q Consensus 580 Lt~~~W~~~~~L~gE~l~~~~~~~~~~~~W~~~s~~~~~~~~p~fYk~tF~ip~~~dptfLd~~g~gKG~vwVNG~nLGR 659 (731)
++++.|.|+++|+||++.+|++++...++|...+..+. ++|.+||+ +|++|++.+||||||.|||||+|||||+||||
T Consensus 517 l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGR 594 (649)
T KOG0496|consen 517 LTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGR 594 (649)
T ss_pred cceeecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCccccc
Confidence 77778999999999999999998888899987654444 46889998 99999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCcCCccccCCCCCCcceeeecCccccccCceEEEecC
Q 004777 660 YWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYYLKTNEYCTDIWIDVLDE 713 (731)
Q Consensus 660 YWp~~~~~~~~~c~y~G~y~~~~c~~~cg~PsQ~~YhVP~~~L~~~~~~~~~~~ 713 (731)
|||++ | | |++|||||+||+..+|+.|+.|
T Consensus 595 YW~~~-----------G-------------~-Q~~yhvPr~~Lk~~~N~lvvfE 623 (649)
T KOG0496|consen 595 YWPSF-----------G-------------P-QRTYHVPRSWLKPSGNLLVVFE 623 (649)
T ss_pred ccCCC-----------C-------------C-ceEEECcHHHhCcCCceEEEEE
Confidence 99998 7 8 9999999999999887777744
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.4e-91 Score=754.18 Aligned_cols=297 Identities=42% Similarity=0.811 Sum_probs=231.2
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE
Q 004777 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 35 ~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 114 (731)
+|+|||||++|+|||+||+|+||++|+|+|+||||+|||||+|||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCC
Q 004777 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG 194 (731)
Q Consensus 115 lr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 194 (731)
|||||||||||++||+|.||++++++++||+|+.|+++|++|+++|+++++ ++|+++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999963
Q ss_pred cchHHHHHHHHHHHhcCCCC-cceeeeCCC--------CCCCccccCCCCCccCCC--------CCCCCCCCceeeeccc
Q 004777 195 AAGHAYVNWAAKMAVGLDTG-VPWVMCKED--------DAPDPVINSCNGFYCDAF--------SPNKPYKPTLWTEAWS 257 (731)
Q Consensus 195 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~v~~~~ng~~~~~~--------~~~~p~~P~~~tE~~~ 257 (731)
.++++||+.|++++++.+++ ++.++++.. ++++..+.+++++.|... ...+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999988 556777642 233333444444555221 2456889999999999
Q ss_pred ccccccCCCcCCCCHHHHHHHHHHHHHhCCceeeeeEeecCCCCCCCCCCCcc----cccccCCCCCCCCCCCCchhHHH
Q 004777 258 GWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPLDEYGLMRQPKYGH 333 (731)
Q Consensus 258 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDYdApl~E~G~~~~~Ky~~ 333 (731)
|||++||++++.+++++++..++++++.|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999965 799999999999999877654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 004777 334 LKQLHEA 340 (731)
Q Consensus 334 lr~l~~~ 340 (731)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=354.41 Aligned_cols=290 Identities=24% Similarity=0.330 Sum_probs=218.8
Q ss_pred EEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCcceeecccccHHHHHHHHH
Q 004777 29 VTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (731)
Q Consensus 29 v~~d~~~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~ 107 (731)
|.+++..|++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4578899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCCEEEeccCc-ccccccCCCCCCeEecccCCeeee---------cCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004777 108 RVGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (731)
Q Consensus 108 ~~GL~vilr~GP-YicaEw~~GG~P~WL~~~p~~~~R---------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (731)
+.||+||||||| .+|.+|..+++|.||..++.-..| .+++.|++++++ |+++|+ ++.+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 999999999999999987654343 335668887777 555566 3336899999
Q ss_pred EEecccccccCCcccCCcchHHHHHHHHHHHhcC-CCCcceeeeC-CCCCCC-ccccCCC-----CCcc--CCCCCCCCC
Q 004777 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCK-EDDAPD-PVINSCN-----GFYC--DAFSPNKPY 247 (731)
Q Consensus 178 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~~-~v~~~~n-----g~~~--~~~~~~~p~ 247 (731)
|+||++||||++.+.++.|.+.+..||++.+-.+ ...-+|=+.- ..+..+ ..|.+.+ .... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999966666778899999999887321 1222331111 100000 1121222 0000 122222222
Q ss_pred C----Cceeeecccccc-cccCCCcCCCC-HHHHHHHHHHHHHhCCceeeeeEeecCCCCC------CCCCCC---c---
Q 004777 248 K----PTLWTEAWSGWF-TEFGGAVHRRP-VQDLAFAVARFIQKGGSFFNYYMYHGGTNFG------RTAGGP---F--- 309 (731)
Q Consensus 248 ~----P~~~tE~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 309 (731)
+ +....|.|-+|| +.|..+.-... .+--++.+++.|..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 3 555677788898 77776655544 34445667777777666 6999999999999 666653 2
Q ss_pred ----ccccccCCCCCCCCCCCC
Q 004777 310 ----ITTSYDYDAPLDEYGLMR 327 (731)
Q Consensus 310 ----~~TSYDYdApl~E~G~~~ 327 (731)
..|++++++.+.+.|..+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 579999999999999853
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=2.2e-20 Score=206.35 Aligned_cols=263 Identities=21% Similarity=0.281 Sum_probs=159.2
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCC
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G 128 (731)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67799999999999999 899999999999999999974 56
Q ss_pred CCCeEecc-cCCeeee----------------cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcc
Q 004777 129 GFPVWLKY-VPGISFR----------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK 191 (731)
Q Consensus 129 G~P~WL~~-~p~~~~R----------------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 191 (731)
..|.||.+ .|++..+ .++|.|+++++++++++++++++ ++.||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCcC
Confidence 78999975 4665321 33688999999999999888874 458999999999987433
Q ss_pred cCCcchHHHHHHHHHHHhcC-------CC-------------CcceeeeCCCC---------------------------
Q 004777 192 SLGAAGHAYVNWAAKMAVGL-------DT-------------GVPWVMCKEDD--------------------------- 224 (731)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~~--------------------------- 224 (731)
....+.++|.+||++.+... |. ..|..+.....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22346778999999888631 11 11221110000
Q ss_pred --CCCccccCCC--C-----C-------ccC-----C-------CC---------------CCCCCCCceeeeccccccc
Q 004777 225 --APDPVINSCN--G-----F-------YCD-----A-------FS---------------PNKPYKPTLWTEAWSGWFT 261 (731)
Q Consensus 225 --~~~~v~~~~n--g-----~-------~~~-----~-------~~---------------~~~p~~P~~~tE~~~Gwf~ 261 (731)
.|+- .-+.| + . .+| . .. ...+.+|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0110 00101 0 0 000 0 00 1146899999999999 56
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhCCceeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCC-CCCchhHHHHHHHHHH
Q 004777 262 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYG-LMRQPKYGHLKQLHEA 340 (731)
Q Consensus 262 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G-~~~~~Ky~~lr~l~~~ 340 (731)
.|+.......++.+....-.-++.|+..+.|+=+ ....+|.-.. ..+.|+-+| .+ +++|.+++++.+.
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 6765555555566666555668999998877755 3333332211 136788899 66 7999999999887
Q ss_pred HHh
Q 004777 341 IKL 343 (731)
Q Consensus 341 i~~ 343 (731)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 763
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.49 E-value=1.1e-12 Score=140.88 Aligned_cols=191 Identities=21% Similarity=0.307 Sum_probs=123.9
Q ss_pred EEEcCCcEEECCEEeEEEEEEecCCC------CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHH
Q 004777 29 VTYDRKAILINGQRRILISGSIHYPR------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (731)
Q Consensus 29 v~~d~~~f~ldG~~~~~~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~f 102 (731)
|.+.++.|+|||||++|.+.+.|... .+++.|+++|++||++|+|+||+ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 57889999999999999999999732 58999999999999999999999 3333344 99
Q ss_pred HHHHHHcCCEEEeccCcc-cccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 103 IKTVQRVGLYAHLRIGPY-VCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 103 l~la~~~GL~vilr~GPY-icaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
+++|.++||+|+..+ |. -++.|..-|.. .....|+.+.+.+.+-+++++.+.+ |++.||||-
T Consensus 65 ~~~cD~~GilV~~e~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~ 127 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-PLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWS 127 (298)
T ss_dssp HHHHHHHT-EEEEE--S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEE
T ss_pred HHHHhhcCCEEEEec-cccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheee
Confidence 999999999999886 22 12233321111 2455788888887777777666665 667999999
Q ss_pred ccccccCCcccCCcchHHHHHHHHHHHhcCCCCcceeeeCCC--CCCCccc-cCCCCCcc-----CCCC----C--CCCC
Q 004777 182 IENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKED--DAPDPVI-NSCNGFYC-----DAFS----P--NKPY 247 (731)
Q Consensus 182 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~--~~~~~v~-~~~ng~~~-----~~~~----~--~~p~ 247 (731)
+-||-. ...+++.|.+++++.+.+.|+...... ...+... +...+.+- +.+. . ..++
T Consensus 128 ~gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 198 (298)
T PF02836_consen 128 LGNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPD 198 (298)
T ss_dssp EEESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCT
T ss_pred cCccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCC
Confidence 999982 357889999999999998887554431 0111111 11111110 0111 1 3578
Q ss_pred CCceeeeccccccc
Q 004777 248 KPTLWTEAWSGWFT 261 (731)
Q Consensus 248 ~P~~~tE~~~Gwf~ 261 (731)
+|++.+||....+.
T Consensus 199 kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 199 KPIIISEYGADAYN 212 (298)
T ss_dssp S-EEEEEESEBBSS
T ss_pred CCeEehhccccccc
Confidence 99999999655444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.38 E-value=7.3e-11 Score=138.61 Aligned_cols=163 Identities=17% Similarity=0.111 Sum_probs=113.8
Q ss_pred ccceeEEEcCCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccc
Q 004777 24 IQCSTVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (731)
Q Consensus 24 ~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~------r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~ 97 (731)
..-++|++++..|+|||+|+++.+.+.|.. .++++.|+++|+.||++|+|+||+ . |-|.+
T Consensus 273 ~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----s-h~p~~--------- 338 (604)
T PRK10150 273 FGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----S-HYPYS--------- 338 (604)
T ss_pred eEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----c-cCCCC---------
Confidence 344789999999999999999999999863 257889999999999999999999 3 44432
Q ss_pred cHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec-------c-cCCeeeecCChhHHHHHHHHHHHHHHHHHhccc
Q 004777 98 DLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK-------Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKL 169 (731)
Q Consensus 98 dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~ 169 (731)
.+|+++|.|+||+|+.... .. |+..|.. + .+....-..+|.+.++.++-+ .++|++
T Consensus 339 --~~~~~~cD~~GllV~~E~p-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~mv~r--- 402 (604)
T PRK10150 339 --EEMLDLADRHGIVVIDETP-AV-------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAI---RELIAR--- 402 (604)
T ss_pred --HHHHHHHHhcCcEEEEecc-cc-------cccccccccccccccccccccccccchhHHHHHHHHH---HHHHHh---
Confidence 3899999999999998852 11 1111211 0 011111123455555444434 444442
Q ss_pred cccCCCceEEecccccccCCcccCCcchHHHHHHHHHHHhcCCCCcceeeeC
Q 004777 170 FASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (731)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (731)
..|++.||||-|-||-... ......+++.|.+.+++++.+.|+..+.
T Consensus 403 -~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 403 -DKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred -ccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 3588899999999997541 1234578889999999999888876543
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.26 E-value=9.9e-11 Score=144.21 Aligned_cols=263 Identities=19% Similarity=0.208 Sum_probs=156.2
Q ss_pred ccceeEEEcCCcEEECCEEeEEEEEEecCC-----C-CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccc
Q 004777 24 IQCSTVTYDRKAILINGQRRILISGSIHYP-----R-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (731)
Q Consensus 24 ~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~-----r-~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~ 97 (731)
..=++|+++++.|+|||+|+++.+.+.|.. | ++++.|+++|+.||++|+|+||+ .+..+.|
T Consensus 315 ~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~--------- 381 (1021)
T PRK10340 315 VGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP--------- 381 (1021)
T ss_pred eEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH---------
Confidence 334778899999999999999999998842 2 47899999999999999999999 4444455
Q ss_pred cHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004777 98 DLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (731)
Q Consensus 98 dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (731)
+|+++|.|+||+|+-.. |..|..|...+ +...-+++|.+.++ +.+++..++++ .+|++.|
T Consensus 382 ---~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~---~~~~~~~mV~R----drNHPSI 441 (1021)
T PRK10340 382 ---RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKV---YVDRIVRHIHA----QKNHPSI 441 (1021)
T ss_pred ---HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHH---HHHHHHHHHHh----CCCCCEE
Confidence 99999999999999986 43333332111 00112356666543 34444455552 3688899
Q ss_pred EEecccccccCCcccCCcchHHHHHHHHHHHhcCCCCcceeeeCCCCCC--CccccCCCCCc--cCCCCCCCCCCCceee
Q 004777 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAP--DPVINSCNGFY--CDAFSPNKPYKPTLWT 253 (731)
Q Consensus 178 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~--~~v~~~~ng~~--~~~~~~~~p~~P~~~t 253 (731)
|||-+.||-+. + . .++.+.+.+++++.+.|+.. .+.... .+++...-..+ +..+....+++|++.+
T Consensus 442 i~WslGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~~-~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~ 511 (1021)
T PRK10340 442 IIWSLGNESGY-----G---C-NIRAMYHAAKALDDTRLVHY-EEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILC 511 (1021)
T ss_pred EEEECccCccc-----c---H-HHHHHHHHHHHhCCCceEEe-CCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEE
Confidence 99999999753 2 1 24677888888888887643 321111 11221110001 1122233457999999
Q ss_pred ecccccccccCCCcCCCCHHHHHHHHHH--HHHhCCce-----e---------eeeEeecCCCCCCCCCCCcccccccCC
Q 004777 254 EAWSGWFTEFGGAVHRRPVQDLAFAVAR--FIQKGGSF-----F---------NYYMYHGGTNFGRTAGGPFITTSYDYD 317 (731)
Q Consensus 254 E~~~Gwf~~wG~~~~~~~~~~~~~~~~~--~l~~g~s~-----~---------n~YM~hGGTNfG~~~G~~~~~TSYDYd 317 (731)
||-.+. |.. ....++.-..+.+ .+ .|+-+ + .-|+.+||- ||-+ |. ..++--+
T Consensus 512 Ey~ham----gn~--~g~~~~yw~~~~~~p~l-~GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~---p~-~~~f~~~ 579 (1021)
T PRK10340 512 EYAHAM----GNG--PGGLTEYQNVFYKHDCI-QGHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDY---PN-NYNFCID 579 (1021)
T ss_pred chHhcc----CCC--CCCHHHHHHHHHhCCce-eEEeeeecCcccccccCCCCCEEEEECCC-CCCC---CC-CcCcccc
Confidence 984221 110 0012222211111 00 01000 0 124455552 5432 10 1223334
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHH
Q 004777 318 APLDEYGLMRQPKYGHLKQLHEAIK 342 (731)
Q Consensus 318 Apl~E~G~~~~~Ky~~lr~l~~~i~ 342 (731)
.-++-++.+ .|.|.+.|.+.+-++
T Consensus 580 Glv~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 580 GLIYPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred eeECCCCCC-ChhHHHHHHhcceEE
Confidence 678889998 599999998765443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.21 E-value=2.9e-10 Score=139.91 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=111.5
Q ss_pred ccceeEEEcCCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccc
Q 004777 24 IQCSTVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (731)
Q Consensus 24 ~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~------r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~ 97 (731)
..-++|+++++.|+|||+|+++.+...|.. +++++.++++|+.||++|+|+||+ .++.+.|
T Consensus 331 ~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p--------- 397 (1027)
T PRK09525 331 VGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP--------- 397 (1027)
T ss_pred EEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH---------
Confidence 334778889999999999999999999942 468999999999999999999999 4555556
Q ss_pred cHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004777 98 DLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (731)
Q Consensus 98 dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (731)
+|+++|.|+||+|+-... . |. .|-.|.. . -.+||.|.+++ .+++..++++ .+|++.|
T Consensus 398 ---~fydlcDe~GilV~dE~~-~---e~-hg~~~~~---~-----~~~dp~~~~~~---~~~~~~mV~R----drNHPSI 454 (1027)
T PRK09525 398 ---LWYELCDRYGLYVVDEAN-I---ET-HGMVPMN---R-----LSDDPRWLPAM---SERVTRMVQR----DRNHPSI 454 (1027)
T ss_pred ---HHHHHHHHcCCEEEEecC-c---cc-cCCcccc---C-----CCCCHHHHHHH---HHHHHHHHHh----CCCCCEE
Confidence 999999999999998852 1 11 1111110 0 13567776554 4455555552 3588899
Q ss_pred EEecccccccCCcccCCcchHHHHHHHHHHHhcCCCCcceeeeC
Q 004777 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (731)
Q Consensus 178 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (731)
|||-+.||-+. + ...+.+.+.+++++.+.|+....
T Consensus 455 i~WSlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 455 IIWSLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred EEEeCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 99999999753 2 12456777788888888875543
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=4.9e-09 Score=125.20 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=99.1
Q ss_pred cccceeEEEcCCcEEECCEEeEEEEEEecCCC-----C-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc
Q 004777 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPR-----S-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS 96 (731)
Q Consensus 23 ~~~~~~v~~d~~~f~ldG~~~~~~sG~~Hy~r-----~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~ 96 (731)
..+=++|+++...|.|||||+++.+..-|.+- . ..+.-+++|++||++|+|+||| . |-|..
T Consensus 280 ~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-------- 346 (808)
T COG3250 280 RIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-------- 346 (808)
T ss_pred eeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC--------
Confidence 34458899999999999999999999999733 3 4555899999999999999999 3 66654
Q ss_pred ccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCc
Q 004777 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGP 176 (731)
Q Consensus 97 ~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 176 (731)
.+|++||.++||+||-.+ ..||..+. +|+.|++.+..=+++++.+.+ |++.
T Consensus 347 ---~~~ydLcDelGllV~~Ea----~~~~~~~~---------------~~~~~~k~~~~~i~~mver~k-------nHPS 397 (808)
T COG3250 347 ---EEFYDLCDELGLLVIDEA----MIETHGMP---------------DDPEWRKEVSEEVRRMVERDR-------NHPS 397 (808)
T ss_pred ---HHHHHHHHHhCcEEEEec----chhhcCCC---------------CCcchhHHHHHHHHHHHHhcc-------CCCc
Confidence 499999999999999996 34443221 778888877666666655554 6779
Q ss_pred eEEecccccccC
Q 004777 177 IILSQIENEYGP 188 (731)
Q Consensus 177 II~~QiENEyg~ 188 (731)
||||-+.||-|.
T Consensus 398 IiiWs~gNE~~~ 409 (808)
T COG3250 398 IIIWSLGNESGH 409 (808)
T ss_pred EEEEeccccccC
Confidence 999999999875
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.86 E-value=2.5e-08 Score=104.68 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=108.5
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-CCCcc-eeecccccHHHHHHHHHHcCCEEEe
Q 004777 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-PSPGH-YNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 38 ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-p~~G~-ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
.+|+++.+.+-+.|.... ..-++.+++||++|+|+||+.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 379999999999994221 2677899999999999999999995544 77764 6666667999999999999999998
Q ss_pred ccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCccc--C
Q 004777 116 RIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKS--L 193 (731)
Q Consensus 116 r~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 193 (731)
.+ +.. |.|....... ...+...+...++++.|+.+++ +..+|++++|=||....... .
T Consensus 81 d~----h~~------~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DL----HNA------PGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EE----EES------TTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTT
T ss_pred Ee----ccC------cccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCcccc
Confidence 75 221 5663221110 1122233444445555555554 34579999999999763211 0
Q ss_pred C----cchHHHHHHHHHHHhcCCCCcceeeeC
Q 004777 194 G----AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (731)
Q Consensus 194 ~----~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (731)
. ..-.++++.+.+.+|+.+.+.+++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0 112456677777788888887665433
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.83 E-value=8.2e-09 Score=95.33 Aligned_cols=64 Identities=23% Similarity=0.534 Sum_probs=48.4
Q ss_pred cCCceEEEEEEeCCCCCCceEEe---e--CCCceEEEEEcCeeeeeeecccccCCCCCCCCCCCcCCccccCCCCCCcce
Q 004777 619 QQSLKWYKAYFDAPTGNEPLALD---L--RSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQR 693 (731)
Q Consensus 619 ~~~p~fYk~tF~ip~~~dptfLd---~--~g~gKG~vwVNG~nLGRYWp~~~~~~~~~c~y~G~y~~~~c~~~cg~PsQ~ 693 (731)
..+..|||++|+.- +.| +.|. . +.+.+++|||||++|||||+.+ | | |+
T Consensus 33 ~~g~~~Yrg~F~~~-~~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----------g-------------~-q~ 85 (111)
T PF13364_consen 33 HAGYLWYRGTFTGT-GQD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----------G-------------P-QT 85 (111)
T ss_dssp SSCEEEEEEEEETT-TEE-EEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----------E-------------C-CE
T ss_pred CCCCEEEEEEEeCC-Ccc-eeEEEEeccCCCceEEEEEECCEEeeeecCCC-----------C-------------c-cE
Confidence 45789999999642 223 4444 3 3578999999999999999888 6 8 67
Q ss_pred eeecCccccccCceEE
Q 004777 694 WYYLKTNEYCTDIWID 709 (731)
Q Consensus 694 ~YhVP~~~L~~~~~~~ 709 (731)
.|.||++||+.+.++.
T Consensus 86 tf~~p~~il~~~n~v~ 101 (111)
T PF13364_consen 86 TFSVPAGILKYGNNVL 101 (111)
T ss_dssp EEEE-BTTBTTCEEEE
T ss_pred EEEeCceeecCCCEEE
Confidence 7889999999986443
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.80 E-value=2.8e-08 Score=91.84 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=59.7
Q ss_pred hhhccCCCCCccEEEEEEEeecCCCcccccCCCCce-eee-CCcceEEEEEECCEEEEEEEc-ccccceeEEeecccccC
Q 004777 460 LEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPT-LTV-ESAGHAVHVFINGQFLGSAFG-TRENRRFTFSGPANLRA 536 (731)
Q Consensus 460 mEql~~t~d~~GyllYrt~i~~~~~~~~~~~g~~~~-L~i-~~~~D~a~VfVNg~~vG~~~~-~~~~~~~~~~~~i~l~~ 536 (731)
.+..+..++..|++|||++|+....+. ... |.+ .+.+++++|||||+++|+... ...+.+|.++..+ |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecC
Confidence 455566677999999999997644331 234 555 488999999999999999883 3334455555432 555
Q ss_pred CCCEEEEEEecCCc
Q 004777 537 GINKIALLSIAVGL 550 (731)
Q Consensus 537 g~n~L~ILvEn~Gr 550 (731)
+.|+|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67899999999996
No 14
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.22 E-value=1.6e-05 Score=85.13 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=87.2
Q ss_pred cceeEEEcCCcEE--ECCEEeEEEEEEecCCC-----------CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcce
Q 004777 25 QCSTVTYDRKAIL--INGQRRILISGSIHYPR-----------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY 91 (731)
Q Consensus 25 ~~~~v~~d~~~f~--ldG~~~~~~sG~~Hy~r-----------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y 91 (731)
.-..|+..++.|. .+|++|+|.+-.+-+.- ..++.|++++..||++|+||||+|- ..|.
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~---- 78 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS---- 78 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT----
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC----
Confidence 3456888899998 89999999988777632 3578999999999999999999962 2333
Q ss_pred eecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCCh--hHHHHHHHHHHHHHHHHHhccc
Q 004777 92 NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG--PFKVAMQGFTQKIVQMMKNEKL 169 (731)
Q Consensus 92 dF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~l~~~~~ 169 (731)
.|-++++++.+++|+|||+-.+. |+..+...+| .|-...-.-+.++++.++++
T Consensus 79 -----~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y-- 133 (314)
T PF03198_consen 79 -----KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY-- 133 (314)
T ss_dssp -----S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT---
T ss_pred -----CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC--
Confidence 38899999999999999998642 2333444455 45333333334456666633
Q ss_pred cccCCCceEEecccccccCCcc--cCCcchHHHHHHHHHHHhcCCC-Ccce
Q 004777 170 FASQGGPIILSQIENEYGPESK--SLGAAGHAYVNWAAKMAVGLDT-GVPW 217 (731)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~~~--~~~~~~~~y~~~l~~~~~~~g~-~vp~ 217 (731)
.+++++=+.||--.-.. .-.+.-|+..+-+|+-.++.+. .+|+
T Consensus 134 -----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 -----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 38999999999854211 0112335555556665665554 5666
No 15
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.07 E-value=2.5e-05 Score=76.43 Aligned_cols=98 Identities=26% Similarity=0.361 Sum_probs=70.4
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEcccccceeEEeecccccCCC-CEEEEEE
Q 004777 467 RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLS 545 (731)
Q Consensus 467 ~d~~GyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~-n~L~ILv 545 (731)
....|+.|||++|..+... .+....|.+.++.+.+.|||||+++|...+... .+.+.++-.++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999875432 234567899999999999999999999876432 45555555677787 9999999
Q ss_pred ecCCcccc--CCCCCcccccccccEEec
Q 004777 546 IAVGLPNV--GLHYETWETGVRGAVVLH 571 (731)
Q Consensus 546 En~Gr~Ny--G~~~~~~~KGI~G~V~l~ 571 (731)
.+.....+ +.. .....||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~-~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFD-YFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSS-EEE--EEESEEEEE
T ss_pred eecCCCceeecCc-CCccCccccEEEEE
Confidence 96655333 111 13578999998873
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.04 E-value=1.1e-05 Score=85.11 Aligned_cols=116 Identities=21% Similarity=0.355 Sum_probs=87.4
Q ss_pred CCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHH
Q 004777 81 WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKI 160 (731)
Q Consensus 81 Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 160 (731)
|...||+||+|||+ .++++++.|+++||.| |..+-+ |-. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 332222 543 6899987433 345678888888888
Q ss_pred HHHHHhccccccCCCceEEecccccccCCcc------cC-CcchHHHHHHHHHHHhcCCCCcceeeeC
Q 004777 161 VQMMKNEKLFASQGGPIILSQIENEYGPESK------SL-GAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (731)
Q Consensus 161 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (731)
+.+++ |.|..|+|=||--+... .+ ...+.+|+...-+.+|+.+.++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46899999999532110 01 1134579988889999988888888765
No 17
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.96 E-value=0.00022 Score=76.70 Aligned_cols=225 Identities=23% Similarity=0.342 Sum_probs=113.1
Q ss_pred CCcEE-ECCEEeEEEEEEecC---CCCCHhHHHHHHHHHHHCCCCEEEEccc--CCCC-C-------C----CCcceeec
Q 004777 33 RKAIL-INGQRRILISGSIHY---PRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNGH-E-------P----SPGHYNFE 94 (731)
Q Consensus 33 ~~~f~-ldG~~~~~~sG~~Hy---~r~~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~h-E-------p----~~G~ydF~ 94 (731)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=|+ |.-+ . | .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 46776 8999999998 4444 4678899999999999999999999766 4322 1 1 12237776
Q ss_pred cc-----ccHHHHHHHHHHcCCEEEecc---CcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 004777 95 GS-----YDLVRFIKTVQRVGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 95 g~-----~dl~~fl~la~~~GL~vilr~---GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (731)
.- ..+++.|+.|+++||.+-|-| +||+-.-|-+| | ..| =.+..++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 44 489999999999999975443 33433334332 0 111 136788999999999995
Q ss_pred ccccccCCCceEEecccccccCCcccCCcchHHHHHHHHHHHhcCCCCcce-eeeCCC-CCCC-----cccc---CCCCC
Q 004777 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPW-VMCKED-DAPD-----PVIN---SCNGF 236 (731)
Q Consensus 167 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~-~~~~~~-~~~~-----~v~~---~~ng~ 236 (731)
.+ +|| |=|-||+ . ......++.+.+.+.+++.+..-+. ++..+. ..++ +-++ ...|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 43 455 7799999 1 1235677888888888876543333 332221 1110 0011 11121
Q ss_pred cc---C-------CCC-CCCCCCCceeeec-ccccccccCCCcCCCCHHHHHHHHHHHHHhCC
Q 004777 237 YC---D-------AFS-PNKPYKPTLWTEA-WSGWFTEFGGAVHRRPVQDLAFAVARFIQKGG 287 (731)
Q Consensus 237 ~~---~-------~~~-~~~p~~P~~~tE~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 287 (731)
.. + .+. ...|.+|++..|- |.|--..+.......+++++....=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 0 011 4568999999995 55544333333345677888665444444565
No 18
>PLN00197 beta-amylase; Provisional
Probab=97.81 E-value=0.00022 Score=80.95 Aligned_cols=83 Identities=25% Similarity=0.507 Sum_probs=65.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCC-----C
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G-----G 129 (731)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+---=.-|+- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5677889999999999999999999999998 799999996 66889999999999643322233433 112 2
Q ss_pred CCeEecc----cCCeee
Q 004777 130 FPVWLKY----VPGISF 142 (731)
Q Consensus 130 ~P~WL~~----~p~~~~ 142 (731)
||.|+.+ +|+|.+
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999986 577654
No 19
>PLN02801 beta-amylase
Probab=97.80 E-value=9.5e-05 Score=83.25 Aligned_cols=83 Identities=25% Similarity=0.503 Sum_probs=64.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCC-----C
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G-----G 129 (731)
.++.-+..|+++|++|++.|.+.|.|...|. .|++|||+| ..+++++|+++||++.+---=.-|+- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5677889999999999999999999999998 599999996 66889999999999643322233433 112 2
Q ss_pred CCeEecc----cCCeee
Q 004777 130 FPVWLKY----VPGISF 142 (731)
Q Consensus 130 ~P~WL~~----~p~~~~ 142 (731)
||.|+.+ +|+|.+
T Consensus 111 LP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFY 127 (517)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999985 577643
No 20
>TIGR03356 BGL beta-galactosidase.
Probab=97.79 E-value=5e-05 Score=86.00 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
..|+++|+.||++|+|++|+-|.|+..+|. +|++|.+|-...+++|+.|.++||.+|+--= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 568999999999999999999999999999 7999999999999999999999999887642 2348999986
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (731)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 6554 4567777777888888777773
No 21
>PLN02705 beta-amylase
Probab=97.74 E-value=9.1e-05 Score=84.51 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=82.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCcceeecccccHHHHHHHHHHcCCEEE--eccCcccccccCCC----
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFG---- 128 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vi--lr~GPYicaEw~~G---- 128 (731)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++|+++||++. |.. --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4577889999999999999999999999998 699999996 6688999999999964 543 33444 222
Q ss_pred -CCCeEecc----cCCeeeec------------------------CChhHHHHHHHHHHHHHHHHHhccccccCCCceEE
Q 004777 129 -GFPVWLKY----VPGISFRT------------------------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (731)
Q Consensus 129 -G~P~WL~~----~p~~~~R~------------------------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~ 179 (731)
-||.|+.+ +|+|.+.. --+.|.+.|+.|=..+.+.|. +|-|.-
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 411 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITA 411 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeE
Confidence 28999986 46764421 113466666666555544432 367888
Q ss_pred ecc
Q 004777 180 SQI 182 (731)
Q Consensus 180 ~Qi 182 (731)
+||
T Consensus 412 I~V 414 (681)
T PLN02705 412 VEI 414 (681)
T ss_pred EEe
Confidence 887
No 22
>PLN02161 beta-amylase
Probab=97.73 E-value=0.00015 Score=81.67 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=64.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCC-----C
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G-----G 129 (731)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++.+-.-=.-|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 5566788999999999999999999999998 799999996 66889999999999653322233332 112 2
Q ss_pred CCeEecc----cCCeee
Q 004777 130 FPVWLKY----VPGISF 142 (731)
Q Consensus 130 ~P~WL~~----~p~~~~ 142 (731)
||.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999985 577754
No 23
>PLN02905 beta-amylase
Probab=97.70 E-value=0.00012 Score=83.67 Aligned_cols=115 Identities=23% Similarity=0.419 Sum_probs=83.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCC-----C
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G-----G 129 (731)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+---=.-|+- +-| -
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IP 359 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIP 359 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566788999999999999999999999998 799999996 66889999999999643322233433 112 2
Q ss_pred CCeEecc----cCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 130 FPVWLKY----VPGISFR------------------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 130 ~P~WL~~----~p~~~~R------------------------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
||.|+.+ +|+|.+. |--+.|.+.|+.|=..+.+.|. +|-|.-+|
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 431 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVE 431 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEE
Confidence 8999986 5776542 1114566666666666555443 36788888
Q ss_pred c
Q 004777 182 I 182 (731)
Q Consensus 182 i 182 (731)
|
T Consensus 432 V 432 (702)
T PLN02905 432 V 432 (702)
T ss_pred e
Confidence 7
No 24
>PLN02803 beta-amylase
Probab=97.67 E-value=0.0002 Score=81.10 Aligned_cols=83 Identities=23% Similarity=0.511 Sum_probs=64.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCC-----C
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G-----G 129 (731)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++|+++||++..---=.-|+- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566788999999999999999999999998 599999996 66889999999999653322233433 112 2
Q ss_pred CCeEecc----cCCeee
Q 004777 130 FPVWLKY----VPGISF 142 (731)
Q Consensus 130 ~P~WL~~----~p~~~~ 142 (731)
||.|+.+ +|+|.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999986 577654
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.11 E-value=0.00039 Score=77.06 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccc----cCCCCCCeE
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE----WNFGGFPVW 133 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaE----w~~GG~P~W 133 (731)
.-+..|+++|++|++.|.+.|.|...|.+ |++|||+| ..+++++|+++||++.+-.-=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 56788999999999999999999999997 99999995 67889999999999754321122321 111137999
Q ss_pred ecc
Q 004777 134 LKY 136 (731)
Q Consensus 134 L~~ 136 (731)
+.+
T Consensus 94 v~~ 96 (402)
T PF01373_consen 94 VWE 96 (402)
T ss_dssp HHH
T ss_pred HHh
Confidence 974
No 26
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.03 E-value=0.00058 Score=78.05 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..|+++|+.||++|+|+.++-|.|+.-+|. +|++|-+|....+++|+.+.++||..|+-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 569999999999999999999999999999 699999999999999999999999977663 2456899998
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (731)
+..+- .++...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75543 3566777778888888887774
No 27
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.95 E-value=0.001 Score=72.60 Aligned_cols=156 Identities=17% Similarity=0.285 Sum_probs=109.0
Q ss_pred EEEEEecCCCCCHh-HHHHHHHHHHHCCCCEEEEc--ccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCccc
Q 004777 45 LISGSIHYPRSTPE-MWEDLIRKAKDGGLDVIDTY--VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (731)
Q Consensus 45 ~~sG~~Hy~r~~~~-~W~~~l~k~Ka~G~N~V~ty--v~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYi 121 (731)
.++.+++..++..+ ..++.+. .-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~~----~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~---- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELFA----KHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT---- 79 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHHH----HH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE----
T ss_pred CEEEEechhHcCCcHHHHHHHH----HhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee----
Confidence 68899998877654 4444444 468888874 5599999999999999 89999999999999986331
Q ss_pred ccccCCCCCCeEecccCCeeeecC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcc---------
Q 004777 122 CAEWNFGGFPVWLKYVPGISFRTD-NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK--------- 191 (731)
Q Consensus 122 caEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~--------- 191 (731)
-=|.. ..|.|+...+.. ... .+...+.++++++.++.++++ -|.|.+|-|=||-=....
T Consensus 80 -LvW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 80 -LVWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp -EEESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred -EEEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCCh
Confidence 12544 789999874110 000 123788999999999888872 189999999999732110
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCcceeeeCC
Q 004777 192 SLGAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (731)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 222 (731)
-+...+.+|+...-+++++...++.++.++-
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 0112346799988899998888888888875
No 28
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.0035 Score=67.32 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=100.9
Q ss_pred HHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCC
Q 004777 67 AKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 146 (731)
Q Consensus 67 ~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d 146 (731)
.|+.+.=|-+.-.=|+..||++|.|+|+ --+++.+.|+++||.+--- +.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 5555555555566699999999999999 5789999999999975322 233 544 6899987643 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccC----Cc---ccCCcchHHHHHHHHHHHhcCCCCcceee
Q 004777 147 GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP----ES---KSLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (731)
Q Consensus 147 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 219 (731)
++.++.+++++..++.+.+ |-|+.|-|=||-=. +. +..+-.+.+|+++.-+.+|+.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 35999999999732 11 11223578999999999999888887887
Q ss_pred eCC
Q 004777 220 CKE 222 (731)
Q Consensus 220 ~~~ 222 (731)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 775
No 29
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.87 E-value=0.0037 Score=68.51 Aligned_cols=139 Identities=22% Similarity=0.337 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCC-cceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCC----CeEec
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGF----PVWLK 135 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~----P~WL~ 135 (731)
+|.|+.||+.|+|+||.=| |+ .|.. |..|.+ +..++.+-|+++||.|+|-.- |- .=|...|- -+|..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGKQNKPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-B--TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCCCCCCccCCC
Confidence 4789999999999999977 54 4544 666666 666777777889999999863 21 12222220 11211
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccC--CcccCC--cch---HHHHHHHHHHH
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP--ESKSLG--AAG---HAYVNWAAKMA 208 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~--~~~~~~--~~~---~~y~~~l~~~~ 208 (731)
-+-..-.+++..|.+.++..|++ +|=.+=||||.||..+ .. ..+ ..- .++++.-.+.+
T Consensus 99 --------~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlw-p~g~~~~~~~~a~ll~ag~~AV 163 (332)
T PF07745_consen 99 --------LSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLW-PDGKPSNWDNLAKLLNAGIKAV 163 (332)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTB-TTTCTT-HHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccC-cCCCccCHHHHHHHHHHHHHHH
Confidence 12355678899999999999994 4557889999999843 21 111 111 23444445666
Q ss_pred hcCCCCcce-eeeCC
Q 004777 209 VGLDTGVPW-VMCKE 222 (731)
Q Consensus 209 ~~~g~~vp~-~~~~~ 222 (731)
|+.+.++.+ ++++.
T Consensus 164 r~~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 164 REVDPNIKVMLHLAN 178 (332)
T ss_dssp HTHSSTSEEEEEES-
T ss_pred HhcCCCCcEEEEECC
Confidence 665555544 44443
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.81 E-value=0.02 Score=56.75 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-----CC---CcceeecccccHHHHHHHHHHcCCEEEeccCcccccc
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-----PS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-----p~---~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaE 124 (731)
-.+.++.|+++++.||++|+|+|=.- |...+ |. ++.|.-....-|+.+|++|++.||.|++..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 57899999999999999999999431 22111 11 22333344468999999999999999998631
Q ss_pred cCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHHHHHH
Q 004777 125 WNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWA 204 (731)
Q Consensus 125 w~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 204 (731)
-|.|... .|.... ..+-+.++..+. . .++++...=+|=|-.|..... ....++.+.|
T Consensus 88 -----~~~~w~~--------~~~~~~---~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWE---AERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred -----Cchhhhc--------cCHHHH---HHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 1233221 222221 111122444554 2 245566778888888887642 2345666666
Q ss_pred HHHHhcCCCCccee
Q 004777 205 AKMAVGLDTGVPWV 218 (731)
Q Consensus 205 ~~~~~~~g~~vp~~ 218 (731)
.+.+++.--+.|+.
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 66666554455553
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.61 E-value=0.0046 Score=71.14 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..|+++|+.||++|+|+.|+-|.|+.-.|. +|++|=+|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358899999999999999999999999997 567888899999999999999999987663 1234899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
.. .|- .|+...++..+|.+.+++.+.
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 443 456666777777777777666
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.57 E-value=0.0049 Score=70.86 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..|+++++.||++|+|+.|+-+.|...+|. +++.|=+|-...+++|+.+.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 457999999999999999999999999997 556788888899999999999999987663 1335899987
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
.. .|- .++...++..+|.+.+++.+.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 443 345555666666666666555
No 33
>PLN02998 beta-glucosidase
Probab=96.39 E-value=0.003 Score=72.96 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
..|+++|+.||++|+|+-|+=|.|+..+|. .|.+|=+|..-.+++|+.+.++||..++-.= =|+ +|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~d---lP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HFD---LPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 568999999999999999999999999996 6788889999999999999999998665531 143 7999976
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 137 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
. .|-.-|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5532222223444444444444444443
No 34
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.36 E-value=0.0085 Score=68.88 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
..|+++++.||++|+|+.|+=|.|+..+|. .|.+|=+|....+++|+.+.++||.-++-.= =| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 458999999999999999999999999996 5788889999999999999999998665531 13 48999987
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
..|- .++...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 344444555555555555444
No 35
>PLN02814 beta-glucosidase
Probab=96.30 E-value=0.0035 Score=72.52 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
..|+++++.||++|+|+-|+=|.|+.-+|. +|++|-+|..-.+++|+.+.++||..++-. -=|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL-----~H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL-----YHYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe-----cCCC---CCHHHHH
Confidence 568999999999999999999999999996 688999999999999999999999876553 1244 7999986
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 137 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
. .|- .|+...++..+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 443 344444444455555544444
No 36
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.013 Score=66.16 Aligned_cols=135 Identities=14% Similarity=0.104 Sum_probs=78.5
Q ss_pred EEECCEEeEEEEEEecCCCC-CHhHH-----HHHHHHHHHCCCCEEEEcccCCCCCCCC--cceee--cccccHHHHHHH
Q 004777 36 ILINGQRRILISGSIHYPRS-TPEMW-----EDLIRKAKDGGLDVIDTYVFWNGHEPSP--GHYNF--EGSYDLVRFIKT 105 (731)
Q Consensus 36 f~ldG~~~~~~sG~~Hy~r~-~~~~W-----~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~--G~ydF--~g~~dl~~fl~l 105 (731)
+.+.+...+.+--.-|-... ....| ++.+..||.+|||+||.++.|..+++.. .-|-. +--.-|++.|+.
T Consensus 45 ~~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~ 124 (407)
T COG2730 45 GQLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINW 124 (407)
T ss_pred ceeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHH
Confidence 33334443333333343333 45668 8999999999999999999944435542 22222 211378999999
Q ss_pred HHHcCCEEEecc----CcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 106 VQRVGLYAHLRI----GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 106 a~~~GL~vilr~----GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
|++.||+|++-. |.-.|-| ..|....-. ......++..+-++.|+.+.+ +.-.||++|
T Consensus 125 a~~~gi~V~iD~H~~~~~~~~~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~ 186 (407)
T COG2730 125 AKKLGIYVLIDLHGYPGGNNGHE------HSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIGFE 186 (407)
T ss_pred HHhcCeeEEEEecccCCCCCCcC------ccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceeeee
Confidence 999999999883 2111111 122221100 022233333444444444444 456899999
Q ss_pred ccccccC
Q 004777 182 IENEYGP 188 (731)
Q Consensus 182 iENEyg~ 188 (731)
+=||.-+
T Consensus 187 ~~NEP~~ 193 (407)
T COG2730 187 LINEPNG 193 (407)
T ss_pred eecCCcc
Confidence 9999863
No 37
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.25 E-value=0.025 Score=67.02 Aligned_cols=100 Identities=23% Similarity=0.189 Sum_probs=68.1
Q ss_pred CCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEcccccceeEEeecccccCCC-CEEEEEEe
Q 004777 468 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLSI 546 (731)
Q Consensus 468 d~~GyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~-n~L~ILvE 546 (731)
+..|..|||++|..+... .|....|.+.++...+.|||||+++|...+... .+.+.++-.|+.|. |+|.|.|+
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~--~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYT--PFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCcc--ceEEeCchhccCCCceEEEEEEe
Confidence 356889999999875321 244578999999999999999999999766432 34555443466665 49999998
Q ss_pred cCCcc---ccCCCCC--------------cccccccccEEeccc
Q 004777 547 AVGLP---NVGLHYE--------------TWETGVRGAVVLHGL 573 (731)
Q Consensus 547 n~Gr~---NyG~~~~--------------~~~KGI~G~V~l~g~ 573 (731)
|.-+. ..|...+ -...||..+|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 74221 0111000 136799999998543
No 38
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.25 E-value=0.011 Score=67.76 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
..|+++++.||++|+|+.|+=|.|+..+|. +|++|=+|..-.+++|+.+.++||..++--= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 458899999999999999999999999996 6788888999999999999999999776641 13 38999987
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
..|- .++...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 6553 355555566666666665555
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.11 E-value=0.0068 Score=69.80 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..|+++|+.||++|+|+.|+=|.|+..+|. +|++|=+|..-.+++|+.+.++||..++-. | =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--~---H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--T---HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--c---cc---CCCHHHH
Confidence 568999999999999999999999999997 667888898999999999999999866553 0 13 3899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+. .|- .++...++..+|.+.+++.+.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 553 233444444444444444444
No 40
>PLN02849 beta-glucosidase
Probab=96.09 E-value=0.0055 Score=70.92 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
..|+++|+.||++|+|+-|+=|.|+.-+|. .|++|=+|....+++|+.+.++||.-++--= =| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 568999999999999999999999999996 4788888999999999999999998665531 24 37999976
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 137 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
. .|-.=|..=..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5532222223444444444444444444
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.02 E-value=0.007 Score=69.65 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..|+++|+.||++|+|+.|+=|.|+.-+|. +|++|=+|....+++|+.+.++||.-++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 568999999999999999999999999997 5678888989999999999999998666530 13 3899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
.. .|-.-|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 5542222223444444444555444444
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.80 E-value=0.036 Score=69.53 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=66.7
Q ss_pred cEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEcccccceeEEeecccccCCCCEEEEEEecCCc
Q 004777 471 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGL 550 (731)
Q Consensus 471 GyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~n~L~ILvEn~Gr 550 (731)
+--|||++|.++..- .|....|.+.++...+.|||||+++|...+... .+.|.+.--++.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999875432 244578999999999999999999998765433 34454443466788999999975432
Q ss_pred cccCCCCCc----ccccccccEEeccc
Q 004777 551 PNVGLHYET----WETGVRGAVVLHGL 573 (731)
Q Consensus 551 ~NyG~~~~~----~~KGI~G~V~l~g~ 573 (731)
-.| +++ ...||..+|.|-..
T Consensus 183 ~s~---le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 STY---LEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCc---cccCCccccccccceEEEEEe
Confidence 222 221 24799999998644
No 43
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.047 Score=58.14 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=76.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHH---cCCEEEeccCcccccccCCCCCCeEecc
Q 004777 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQR---VGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~---~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
=.|.|+-+|+.|+|-||.-| ||..--.-|.=-=.|+.|+.+.+++|++ .||+|++..= |- .=|.- |+-- +
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS-DfwaD---PakQ-~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS-DFWAD---PAKQ-K 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch-hhccC---hhhc-C
Confidence 36899999999999999854 7766445555445677899999998864 7999999851 10 01110 1100 0
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccc
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (731)
+|..-..-+-+.-.+++-.|.+..+..++++ |=-+=||||.||-.
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 1211111233455677888899999999854 44567999999984
No 44
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.34 E-value=0.069 Score=67.03 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=65.2
Q ss_pred ccEEEEEEEeecCCCcccccCCC-CceeeeCCcceEEEEEECCEEEEEEEcccccceeEEeecccccCCCCEEEEEEecC
Q 004777 470 SDYLWYMTSVEISSSESFLRGGQ-KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAV 548 (731)
Q Consensus 470 ~GyllYrt~i~~~~~~~~~~~g~-~~~L~i~~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~n~L~ILvEn~ 548 (731)
.+-.|||++|..+..- .+. ...|...++...+.|||||+++|...+.. ..+.|.+.-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999875421 122 46788999999999999999999876543 2355555445677889999998432
Q ss_pred CccccCCCCCc----ccccccccEEeccc
Q 004777 549 GLPNVGLHYET----WETGVRGAVVLHGL 573 (731)
Q Consensus 549 Gr~NyG~~~~~----~~KGI~G~V~l~g~ 573 (731)
-. |.++++ ...||..+|.|--.
T Consensus 193 sd---gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 SD---GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred CC---CCccccCCceeeccccceEEEEEc
Confidence 11 222221 34699999998543
No 45
>PRK09936 hypothetical protein; Provisional
Probab=94.91 E-value=0.091 Score=56.16 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=47.6
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc-ccHHHHHHHHHHcCCEEEec
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-YDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~-~dl~~fl~la~~~GL~vilr 116 (731)
.+++++.|+++++.+|+.||+|+=+ =|..- |.=||.|. ..|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999999754 46543 11188765 59999999999999999886
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.72 E-value=0.18 Score=48.20 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=64.6
Q ss_pred HHHHHHHCCCCEEEEccc----C-----CCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeE
Q 004777 63 LIRKAKDGGLDVIDTYVF----W-----NGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVW 133 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~tyv~----W-----n~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~W 133 (731)
-++.+|++|+|+|.++.= | ..|.+.|+- .+.-|.+++++|++.||.|++|...- -.|+-.--.|.|
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW 79 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEW 79 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCce
Confidence 467899999999998442 2 235555543 12245899999999999999998654 344445567999
Q ss_pred ecccCCee-------------eecCChhHHHHHHHHHHHHHHHH
Q 004777 134 LKYVPGIS-------------FRTDNGPFKVAMQGFTQKIVQMM 164 (731)
Q Consensus 134 L~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~l 164 (731)
+..+++=+ .-+-|.+|++.+.+-+++++...
T Consensus 80 ~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 80 FVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 97654311 11235678877766666665544
No 47
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.04 Score=62.49 Aligned_cols=96 Identities=19% Similarity=0.326 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--ceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..++++++.||+||+|+.|+-|.|+.--|..+ +.+=.|-.-.+++++.|.++|+.-++-.= =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 45889999999999999999999999999654 48888889999999999999999776631 244 799998
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+. .|-. |..-.++..+|.+.++.++.
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 76 3542 33334445555555555554
No 48
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=94.31 E-value=0.55 Score=54.01 Aligned_cols=149 Identities=15% Similarity=0.241 Sum_probs=98.9
Q ss_pred CcEEECCEEeEEEEEEecC-----CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHH
Q 004777 34 KAILINGQRRILISGSIHY-----PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQR 108 (731)
Q Consensus 34 ~~f~ldG~~~~~~sG~~Hy-----~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~ 108 (731)
-.|.|||.|.++.++.--+ .|.+-+.-+-.|+-.+++|+|++++ |. -| ...-+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GG------vYEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GG------VYESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cc------cccchhHHHHhhh
Confidence 4689999999999887544 3345555666799999999999999 33 12 3345699999999
Q ss_pred cCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccc-
Q 004777 109 VGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG- 187 (731)
Q Consensus 109 ~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg- 187 (731)
.||.|--.- =+.||-. ..|..|+..+++=++.-+.+|+ .+..||.+.=.||=-
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccHH
Confidence 999885222 1456544 2578898888887777666666 345788887655531
Q ss_pred ----C-CcccCC-c--chH----HHHHHHHHHHhcCCCCcceeeeCC
Q 004777 188 ----P-ESKSLG-A--AGH----AYVNWAAKMAVGLDTGVPWVMCKE 222 (731)
Q Consensus 188 ----~-~~~~~~-~--~~~----~y~~~l~~~~~~~g~~vp~~~~~~ 222 (731)
+ +...+. + .-+ -|.+-++++...-.-..|.++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 1 110000 0 112 255556677766667889887664
No 49
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=93.26 E-value=0.68 Score=53.73 Aligned_cols=333 Identities=19% Similarity=0.286 Sum_probs=154.6
Q ss_pred EEeEEEEEEecC------CCCCHhHHHHHHHHH---HHCCCCEEEEccc--------CCCCCCCCcc-----eeecc--c
Q 004777 41 QRRILISGSIHY------PRSTPEMWEDLIRKA---KDGGLDVIDTYVF--------WNGHEPSPGH-----YNFEG--S 96 (731)
Q Consensus 41 ~~~~~~sG~~Hy------~r~~~~~W~~~l~k~---Ka~G~N~V~tyv~--------Wn~hEp~~G~-----ydF~g--~ 96 (731)
|++.=++|++=- .+.+++.=++.|+.+ +-+|++.+|+.|- +.+.+ .|+. |+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 444557777732 334544433334333 4589999998775 23222 2332 22221 1
Q ss_pred ccHHHHHHHHHHc--CCEEEeccCcccccccCCCCCCeEecccCCe----eeec-CChhHHHHHHHHHHHHHHHHHhccc
Q 004777 97 YDLVRFIKTVQRV--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNGPFKVAMQGFTQKIVQMMKNEKL 169 (731)
Q Consensus 97 ~dl~~fl~la~~~--GL~vilr~GPYicaEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~~~~~~~~l~~~l~~~~~ 169 (731)
..+-.+|+.|++. +|+++.-| |. .|+|++....+ .++. .++.|.++...||.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 2234688877763 68888887 75 79999864332 2442 2456877778888888777774
Q ss_pred cccCCCceEEecccccccCC-------cc-cCCc-chHHHHH-HHHHHHhcCCC--CcceeeeCC--CCCCC---cccc-
Q 004777 170 FASQGGPIILSQIENEYGPE-------SK-SLGA-AGHAYVN-WAAKMAVGLDT--GVPWVMCKE--DDAPD---PVIN- 231 (731)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~-------~~-~~~~-~~~~y~~-~l~~~~~~~g~--~vp~~~~~~--~~~~~---~v~~- 231 (731)
+|=||=++-+-||.... ++ .+.+ ..++|++ .|.-.+++.++ ++-++.++. ...|+ .++.
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 45599999999998631 11 1221 2456775 48888888876 666666553 12221 1111
Q ss_pred -----CCC--CCcc--C-C-------CCCCCCCCCceeeecccccccccCCCcC---CCCHHHHHHHHHHHHHhCCceee
Q 004777 232 -----SCN--GFYC--D-A-------FSPNKPYKPTLWTEAWSGWFTEFGGAVH---RRPVQDLAFAVARFIQKGGSFFN 291 (731)
Q Consensus 232 -----~~n--g~~~--~-~-------~~~~~p~~P~~~tE~~~Gwf~~wG~~~~---~~~~~~~~~~~~~~l~~g~s~~n 291 (731)
... +++| . . .....|++.++.||-..|.- .|+.... ...++..+..+..-|..+++ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 2222 1 1 11346899999999876531 1221111 11233444444444556644 3
Q ss_pred eeEe------ecCCCCCCC-CCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCCCccccCCCccce
Q 004777 292 YYMY------HGGTNFGRT-AGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQA 364 (731)
Q Consensus 292 ~YM~------hGGTNfG~~-~G~~~~~TSYDYdApl~E~G~~~~~Ky~~lr~l~~~i~~~~~~l~~~~p~~~~l~~~~~~ 364 (731)
+-++ .||-|++.- ..++..+.. +. +|. .++|.|+.|..+.+||+.-..-+-.. ........+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeE
Confidence 3232 488887532 112221111 11 121 23789999999888776422211100 0000112444
Q ss_pred eeeecCCcceeeEeeccCCccc-eEEEeCC-------eeeecCCCce
Q 004777 365 HVFSAGQQKCAAFLSNYNTKSA-ARVTFNG-------RQYNLPPWSI 403 (731)
Q Consensus 365 ~~y~~~~~~~~~fl~n~~~~~~-~~v~~~~-------~~~~lp~~sv 403 (731)
..|...+|..+..+.|...... .+|++++ ..++||+.|+
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 5566666666666666443322 2355542 2356666554
No 50
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=93.22 E-value=0.099 Score=51.00 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=36.3
Q ss_pred cCCceEEEEEEeCCCCC--CceEEeeCCC-ceEEEEEcCeeeeeee
Q 004777 619 QQSLKWYKAYFDAPTGN--EPLALDLRSM-GKGQVWINGQSIGRYW 661 (731)
Q Consensus 619 ~~~p~fYk~tF~ip~~~--dptfLd~~g~-gKG~vwVNG~nLGRYW 661 (731)
..+..||+.+|++|+.. ..++|.+.+. ....|||||+.+|+-.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeC
Confidence 34689999999998753 3689999885 5999999999999966
No 51
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.11 E-value=15 Score=41.35 Aligned_cols=248 Identities=13% Similarity=0.155 Sum_probs=126.6
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCcceeeccccc-HHHHHHHHHHcCCEEEeccCccc
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFEGSYD-LVRFIKTVQRVGLYAHLRIGPYV 121 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~ydF~g~~d-l~~fl~la~~~GL~vilr~GPYi 121 (731)
+.+.+..++.|. +.+|++|+.-|=. +-.|.-....-..-+-.-.+| |.+|.+.|+++||.+-+ |.
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 344456788885 4778888886542 222443322111111111234 56788999999998766 43
Q ss_pred c-cccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHH
Q 004777 122 C-AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAY 200 (731)
Q Consensus 122 c-aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y 200 (731)
. .+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|. .+ ||-|+|- +-..+.. ...--
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit--~Y-----gpd~lWf-D~~~~~~------~~~~~ 211 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVT--RY-----KPDLLWF-DGGWEAP------DDYWR 211 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHh--cC-----CCceEEE-eCCCCCc------cchhc
Confidence 3 47764 44432111111234567888888888888888777 32 3445552 2111110 11112
Q ss_pred HHHHHHHHhcCCCCc-ceeeeCCCCCCCccccCCCCC-cc-CCCCCC-CCCCCce-eeecccccccccCC-CcCCCCHHH
Q 004777 201 VNWAAKMAVGLDTGV-PWVMCKEDDAPDPVINSCNGF-YC-DAFSPN-KPYKPTL-WTEAWSGWFTEFGG-AVHRRPVQD 274 (731)
Q Consensus 201 ~~~l~~~~~~~g~~v-p~~~~~~~~~~~~v~~~~ng~-~~-~~~~~~-~p~~P~~-~tE~~~Gwf~~wG~-~~~~~~~~~ 274 (731)
++.|.++++++..+. -.+.++... .. .+...++ .+ +...+. ....|.- ++=.-.+|+-+-++ .....++++
T Consensus 212 ~~~l~~~~~~~qP~~~~vvvn~R~~-~~--~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 212 SKEFLAWLYNLSPVKDTVVVNDRWG-GT--GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHHhCCCCceEEEEcccc-cc--CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 345666666554443 112223211 00 0000000 01 111111 0111211 11111355555443 234678999
Q ss_pred HHHHHHHHHHhCCceeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhcccc
Q 004777 275 LAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALV 349 (731)
Q Consensus 275 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdApl~E~G~~~~~Ky~~lr~l~~~i~~~~~~l~ 349 (731)
+...+.+..++|++++ + | -+-+.+|.+....-..|+++...++...+.+-
T Consensus 289 li~~l~~~Vsk~GnlL-L------------N------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy 338 (384)
T smart00812 289 LIRDLVDIVSKGGNLL-L------------N------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIY 338 (384)
T ss_pred HHHHHhhhcCCCceEE-E------------c------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceee
Confidence 9999999999998852 1 1 13346788866666788999988887655443
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=92.15 E-value=0.39 Score=47.63 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCC-------CCCcce-----eecccccHHHHHHHHHHcCCEEEeccCcccccc
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHE-------PSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-------p~~G~y-----dF~g~~dl~~fl~la~~~GL~vilr~GPYicaE 124 (731)
-+-+.++|.-+|++|+|+|..-=++...+ -.+..| .|....++.+|++.|+++||.||+-.=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45567778889999999998843332221 122222 456668999999999999999998875444443
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.14 E-value=0.6 Score=50.98 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=72.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCC-------CCCCC-------CcceeecccccHHHHHHHHHHcCCEEEeccCccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWN-------GHEPS-------PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn-------~hEp~-------~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYi 121 (731)
.++.-++.|+++|++|+|+|-.-|-+. -.+|. +|. + -|.--|+.+|+.|++.||.|+... .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 678888999999999999997655432 12221 111 1 022269999999999999999765 111
Q ss_pred ccccC----CCCCCeEec-ccCCeeeec----CC----hhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc
Q 004777 122 CAEWN----FGGFPVWLK-YVPGISFRT----DN----GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (731)
Q Consensus 122 caEw~----~GG~P~WL~-~~p~~~~R~----~d----~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 183 (731)
..--. .-..|.|+. +.++..... .+ .+-..+|++|+..++..|.+ .+ +|=++|++
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 11001 112478875 445543333 11 12357788888888766653 22 46677877
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.12 E-value=2.6 Score=50.38 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=40.4
Q ss_pred HHHH-HHHHHCCCCEEEE-cccCCCCCC----CCc-----ceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLI-RKAKDGGLDVIDT-YVFWNGHEP----SPG-----HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l-~k~Ka~G~N~V~t-yv~Wn~hEp----~~G-----~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.++| .-+|++|+|+|+. .|+.+-... .+- .-.|.+..||.+|++.|+++||.|||-.
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3454 7789999999998 676431110 000 1135556799999999999999999875
No 55
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=90.66 E-value=5.8 Score=48.32 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHHHCCCCEEEE-ccc-------CCCCCC---CCcceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 57 PEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHEP---SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp---~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
.+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456888999999999999996 232 433211 01 113555679999999999999999987543
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.58 E-value=2.3 Score=51.81 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=37.5
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCC-----CCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 64 IRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 64 l~k~Ka~G~N~V~t-yv~-------Wn~-----hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
|.-+|++|+|+|+. .|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999997 453 221 11111 35566799999999999999999874
No 57
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.44 E-value=0.62 Score=51.84 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=49.1
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
++=|+.+...+.+.....|++|++.|+..|=| ++|.|+...=+.- ..+..++++|+++||.|++-+.|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 45567777778899999999999999999999 9999996432221 37889999999999999999977443
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.87 E-value=7.7 Score=46.64 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=36.5
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCCC-----CCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 64 IRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 64 l~k~Ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.-+|++|+|+|+. .|. |.+. .|.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999996 231 3221 1111 23455799999999999999999874
No 59
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=88.54 E-value=0.38 Score=54.44 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=106.4
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCC-CC---CCcceeec-ccccHHHHHHHHHHc
Q 004777 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EP---SPGHYNFE-GSYDLVRFIKTVQRV 109 (731)
Q Consensus 35 ~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~h-Ep---~~G~ydF~-g~~dl~~fl~la~~~ 109 (731)
.|.++++++..++..--++++.-++=+++|+-|+.+|+++++.. -+- |+ ++|.-+-. +..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888877777788877778889999999999999995 444 66 33322222 335788999999999
Q ss_pred CCEEEeccCcccccccCCCCCCe---Eec-ccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 004777 110 GLYAHLRIGPYVCAEWNFGGFPV---WLK-YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (731)
Q Consensus 110 GL~vilr~GPYicaEw~~GG~P~---WL~-~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 185 (731)
+|+|+++- |..==.+||.=. |-. +.|+-.. .|+.++..-++|++.+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998773 322123455322 221 1232111 356677777888888777444 4458889999999
Q ss_pred ccCCcccCCcchHHHHHHHHHHHh
Q 004777 186 YGPESKSLGAAGHAYVNWAAKMAV 209 (731)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~ 209 (731)
.... -...+..+++|+++|+-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3211 12256789999999975
No 60
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=87.34 E-value=4.8 Score=42.69 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHc-CCEEEeccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~-GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
.-|++.|+.+|++|++.|+.-+....-.. .......++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 66999999999999999999554321111 1111346899999999999 7665543 2331
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN 184 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 184 (731)
..+.+.++.-++.....+++.++..+ .+ |-+.|.+...+
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 01223455445555555666666555 33 44566665543
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.24 E-value=10 Score=46.06 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCcceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 62 DLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
+.|.-+|++|+|+|+. .|+ |.+. .|.+ .|....++.+|++.|+++||.|||-.=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3468899999999987 342 4321 2222 3556679999999999999999998544
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.91 E-value=2.9 Score=47.32 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=80.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcc-------------cCCCCCCCCccee-ecccccHHHHHHHHHHcCCEEEeccCcc
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYV-------------FWNGHEPSPGHYN-FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv-------------~Wn~hEp~~G~yd-F~g~~dl~~fl~la~~~GL~vilr~GPY 120 (731)
..++.-.+.|.+++++|+|||-.-| +|..-. ||..- =.|..-|...|++|++.||.|+.+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3678889999999999999996422 233332 33321 1244578889999999999999998888
Q ss_pred cccccCCCC---CCeEeccc-CCeee-ecCC-------hhHHHHHHHHHHHH-HHHHHhccccccCCCceEEeccccccc
Q 004777 121 VCAEWNFGG---FPVWLKYV-PGISF-RTDN-------GPFKVAMQGFTQKI-VQMMKNEKLFASQGGPIILSQIENEYG 187 (731)
Q Consensus 121 icaEw~~GG---~P~WL~~~-p~~~~-R~~d-------~~y~~~~~~~~~~l-~~~l~~~~~~~~~gGpII~~QiENEyg 187 (731)
.-|--..-. -|.|+... |+.+. |... .+..-+++.|+..+ ++.++ .+ .|=++|.+-=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~--~Y------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR--NY------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh--CC------CCCceecceeec
Confidence 765422211 26666543 44332 2221 34667889999888 55555 33 566788776554
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.82 E-value=10 Score=48.67 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCCCCC--CCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 62 DLIRKAKDGGLDVIDT-YVF-------WNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp--~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.|.-+|++|+|+|+. .|+ |.+.-- ..=.=.|.+..||.+|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468899999999997 442 432110 0001135566899999999999999999874
No 64
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=86.46 E-value=8.2 Score=40.94 Aligned_cols=131 Identities=13% Similarity=0.186 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE-eccCcccccccCCCCCCeEec
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPYicaEw~~GG~P~WL~ 135 (731)
..-|++.|+.++++|++.|+.-+ +.. ...+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999943 222 2223344554 3478899999999999874 33321 01111
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCc---chHHHHHHHHHHHhcCC
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (731)
+-+.|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 222356666666777777777777 33 55666542 111110 000000 12245666777777777
Q ss_pred CCc
Q 004777 213 TGV 215 (731)
Q Consensus 213 ~~v 215 (731)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.11 E-value=6 Score=41.76 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE-eccCcccccccCCCCCCeEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPYicaEw~~GG~P~WL~~ 136 (731)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++.++-++++++||.|- +.++-+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------ 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------ 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc------
Confidence 36899999999999999999532 2221 01122333 3478999999999999875 222110 0 00
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcc-cCCcchHHHHHHHHHHHhcCCCCc
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK-SLGAAGHAYVNWAAKMAVGLDTGV 215 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 215 (731)
.+.+.|+..+++..+.+++++...+ .+ |.+.|.+---..+..... ..-..-.+.++.+.+++++.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1234566666666667777776666 33 445554421101100000 000112356777888888877754
No 66
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.82 E-value=1.3 Score=51.27 Aligned_cols=60 Identities=8% Similarity=0.224 Sum_probs=42.9
Q ss_pred hHHH---HHHHHHHHCCCCEEEE-cccCCC-----CCCCCcc-e-------------eecccccHHHHHHHHHHcCCEEE
Q 004777 58 EMWE---DLIRKAKDGGLDVIDT-YVFWNG-----HEPSPGH-Y-------------NFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 58 ~~W~---~~l~k~Ka~G~N~V~t-yv~Wn~-----hEp~~G~-y-------------dF~g~~dl~~fl~la~~~GL~vi 114 (731)
+.|. +.|.-+|++|+++|-. .++-+. |--.+-. | .|....||.++++.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4564 5678889999999987 455432 2222212 2 24456799999999999999999
Q ss_pred ecc
Q 004777 115 LRI 117 (731)
Q Consensus 115 lr~ 117 (731)
+-.
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 885
No 67
>PRK01060 endonuclease IV; Provisional
Probab=84.23 E-value=19 Score=38.13 Aligned_cols=93 Identities=13% Similarity=0.226 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEE---EeccCcccccccCCCCCCeEecc
Q 004777 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA---HLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v---ilr~GPYicaEw~~GG~P~WL~~ 136 (731)
+++.|++++++|++.|+..+- +-|.-.++.++- .++.++-+++++.||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 889999999999999999542 112212222222 26888999999999973 22 23432 1
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
.+-+.|+..+++..+.+++.+...+ .+ |.++|-+.
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 2334577888887777887777766 33 44555554
No 68
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=84.22 E-value=2.1 Score=49.52 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=44.8
Q ss_pred EEEecCCCCCHhHHHHHHHHHH-HCCCCEEEEc-cc---CCC-CC-CCCc--ceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 47 SGSIHYPRSTPEMWEDLIRKAK-DGGLDVIDTY-VF---WNG-HE-PSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 47 sG~~Hy~r~~~~~W~~~l~k~K-a~G~N~V~ty-v~---Wn~-hE-p~~G--~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
-|+-|....-++.|+..|+.++ +.||.-|++- +| ... .| ..+| .|||+ .|+.++|...++||.-+++.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 4555666667888999999986 8899999983 22 111 11 1233 39999 99999999999999988777
Q ss_pred C
Q 004777 118 G 118 (731)
Q Consensus 118 G 118 (731)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 6
No 69
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.14 E-value=1.7 Score=43.00 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=72.9
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeee
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 143 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R 143 (731)
|+.++++|+..|+............ ...++++.++++++||.+..--.+. .+.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc---cccc----------cccccc
Confidence 6789999999999965533222211 3478999999999999965322111 1111 111134
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc--ccccCCccc-CCcchHHHHHHHHHHHhcCCCCc
Q 004777 144 TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE--NEYGPESKS-LGAAGHAYVNWAAKMAVGLDTGV 215 (731)
Q Consensus 144 ~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 215 (731)
+.+++ ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-+.-.+.++.+.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 44444 7777778888888887 33 5677777754 222211000 00123456677777777777654
No 70
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.13 E-value=1.2 Score=46.99 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc--cee-------ecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYN-------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~yd-------F~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.++|.-+|++|+|+|..-=++......-| .-| |.+..+|.+|++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999998433332211111 122 2345799999999999999999875
No 71
>PRK12313 glycogen branching enzyme; Provisional
Probab=82.44 E-value=2.2 Score=51.07 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=38.3
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCC-----CCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 64 IRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 64 l~k~Ka~G~N~V~t-yv~-------Wn~-----hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
|.-+|++|+|+|.. .|+ |.+ ..+.| .|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999996 443 221 11111 35667899999999999999999974
No 72
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=81.64 E-value=15 Score=40.57 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=89.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHH---HcCCEEEeccCcccccccCCCCC-
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGF- 130 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~---~~GL~vilr~GPYicaEw~~GG~- 130 (731)
..|+..+..++.+|+.|++.--.|-.| |+|++-|++-++..- +.+|...|. |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 467889999999999999999998766 556667766665553 345554444 443220
Q ss_pred CeEecccCCeeeecCChhHH--HHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHHHHHHHHHH
Q 004777 131 PVWLKYVPGISFRTDNGPFK--VAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMA 208 (731)
Q Consensus 131 P~WL~~~p~~~~R~~d~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 208 (731)
=.|=.....+.+- ..|. +..++.++.|++.+++..++--+|=||+++=--.+. +.-+++++.+++.+
T Consensus 116 ~~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 116 RRWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred hccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 1122222222111 1221 334677888899999866666788999988433222 24578999999999
Q ss_pred hcCCCCcceeeeC
Q 004777 209 VGLDTGVPWVMCK 221 (731)
Q Consensus 209 ~~~g~~vp~~~~~ 221 (731)
++.|+.-+.+...
T Consensus 185 ~~~G~~giyii~~ 197 (345)
T PF14307_consen 185 KEAGLPGIYIIAV 197 (345)
T ss_pred HHcCCCceEEEEE
Confidence 9999887654433
No 73
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=81.31 E-value=2.4 Score=49.82 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~t-yv~-------Wn~-----hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.++|.-+|++|+|+|+. .|+ |.+ ..+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45789999999999996 342 322 22222 35566799999999999999999874
No 74
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=80.71 E-value=19 Score=40.65 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEc----ccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE-eccCcccccccCCCCCCe
Q 004777 58 EMWEDLIRKAKDGGLDVIDTY----VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPV 132 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~ty----v~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPYicaEw~~GG~P~ 132 (731)
....+++++++++|+..|+.. ++|..-+.+ -..++.++-++++++||.|. +-++-+....|..|+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~--- 101 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG--- 101 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC---
Confidence 456689999999999999963 122111110 02357899999999999975 333211112222222
Q ss_pred EecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 133 WLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 133 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+-+.|+..+++.-+.+++.+..-+
T Consensus 102 ---------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ---------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334577766665555666666555
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=78.99 E-value=29 Score=36.53 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccC
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 138 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p 138 (731)
-+++.|+.++++|++.|+...-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48999999999999999983210 011111 121 24788999999999998753 2221 123333221
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc-cc-CCcccCCcchHHHHHHHHHHHhcCCCCc
Q 004777 139 GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE-YG-PESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (731)
Q Consensus 139 ~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (731)
..++.-+++..+.+++.+..-+ .+ |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.+++.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234445555555555555555 22 445554422111 00 000000 122346777888888877644
No 76
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=78.50 E-value=2.4 Score=44.74 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 556788899999999999998 45655554 34677999999999999999988
No 77
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=77.66 E-value=3.2 Score=48.84 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=43.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCccee----------ecccccHHHHHHHHHHcCCEEEecc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~yd----------F~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.-.-+.++|.-+|++|+|+|-. .++=+-.. ..-|+ |.+..||.+|++.|+++||+|||-.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445778899999999999987 34322100 01222 4455799999999999999999874
No 78
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.09 E-value=46 Score=34.62 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
-+++.+++++++|++.|+...++ ..++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 37899999999999999984321 13688999999999999864
No 79
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.04 E-value=21 Score=37.77 Aligned_cols=129 Identities=12% Similarity=0.210 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE-eccCcccccccCCCCCCeEeccc
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPYicaEw~~GG~P~WL~~~ 137 (731)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5899999999999999999432 1111 01122333 2368899999999999874 332110 0010
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCc---chHHHHHHHHHHHhcCCCC
Q 004777 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLDTG 214 (731)
Q Consensus 138 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g~~ 214 (731)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+.= -+.. ....... .-.+.++.|.+++++.|+.
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~~-~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~GV~ 153 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLAG-YDVY-YEQANNETRRRFIDGLKESVELASRASVT 153 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC-cccc-ccccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 113456666666777777777776 33 556665421 0000 0000000 1134667777777777765
Q ss_pred c
Q 004777 215 V 215 (731)
Q Consensus 215 v 215 (731)
+
T Consensus 154 i 154 (283)
T PRK13209 154 L 154 (283)
T ss_pred E
Confidence 4
No 80
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=76.56 E-value=38 Score=35.44 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=37.9
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
+.|-+.+ ++++|++++++|++.|+.. . |. ..+++++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4455554 6788999999999999982 1 11 14799999999999999854
No 81
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=76.08 E-value=5.6 Score=47.36 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=42.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
..+.=.+.|.-+|+||+++|+. .|. |.+- -|.. .|..-.||.+|||.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5566677899999999999997 221 3321 1111 2344479999999999999999987
No 82
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=75.77 E-value=35 Score=35.85 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=65.5
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcce-eecccccHHHHHHHHHHcCCEEEeccCcccccccC
Q 004777 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY-NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (731)
Q Consensus 48 G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y-dF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~ 126 (731)
|+.+..+-+ -++.|+++.++|++.|+. ...+|..-.- +++ ..+++++-++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444544 347899999999999999 5555533210 222 236889999999999986542 3432
Q ss_pred CCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 127 FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 127 ~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
+.+.+.|+..+++..+++++.+...+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12445677777777778888777766 33 45555553
No 83
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.74 E-value=4.5 Score=48.26 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCCCC-----CCCccee----ec--ccccHHHHHHHHHHcCCEEE
Q 004777 62 DLIRKAKDGGLDVIDT-YVF---------------WNGHE-----PSPGHYN----FE--GSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~t-yv~---------------Wn~hE-----p~~G~yd----F~--g~~dl~~fl~la~~~GL~vi 114 (731)
+.|.-+|++|+|+|+. .|+ |.+.- |.+ .|- |- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 443 32221 110 110 10 12689999999999999999
Q ss_pred ecc
Q 004777 115 LRI 117 (731)
Q Consensus 115 lr~ 117 (731)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 885
No 84
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=75.55 E-value=8.4 Score=42.28 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=58.7
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcc-eeecccccHHHHHHHHHHcCCEEEeccCcccccc
Q 004777 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (731)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~-ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaE 124 (731)
++=|+.+.|.+.+.=..-|++|...|+.-|=| ++|.|++.. --|. -+.++++.|+++||+||+-+-|=|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45577778999888888999999999999988 999998742 1222 578999999999999999998766444
No 85
>PLN02960 alpha-amylase
Probab=75.36 E-value=5 Score=49.37 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=40.3
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCCCCC--CCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp--~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
++.|.-+|++|+|+|+. .|+ |.+.-- ..=.-.|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35699999999999997 443 432110 0001134456799999999999999999985
No 86
>PRK09505 malS alpha-amylase; Reviewed
Probab=73.49 E-value=6.1 Score=47.81 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCC----Cc------------------ceeecccccHHHHHHHHHHcCCEEEec
Q 004777 60 WEDLIRKAKDGGLDVIDT-YVFWNGHEPS----PG------------------HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~----~G------------------~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||.+|++.|+++||+||+-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 677899999999999986 4543333211 11 123455679999999999999999988
Q ss_pred c
Q 004777 117 I 117 (731)
Q Consensus 117 ~ 117 (731)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 87
>PRK10785 maltodextrin glucosidase; Provisional
Probab=73.13 E-value=6.6 Score=46.84 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCC--CCCCCCcce-----eecccccHHHHHHHHHHcCCEEEecc
Q 004777 60 WEDLIRKAKDGGLDVIDT-YVFWN--GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~t-yv~Wn--~hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
-.++|.-+|++|+|+|-. .||=+ .|---...| .|.+..||.+|++.|++.||+|||-.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356789999999999997 56532 121111111 24566799999999999999999864
No 88
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=72.69 E-value=8.7 Score=41.62 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC-Ccceeeccc--ccHHHHHHHHHHcCCEEEeccCccccc
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYica 123 (731)
...+..++.++++|+.|+.+=...+-..++... -+.|.|+-. -|..++++..+++|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 367788999999999996654444443333322 135665533 389999999999999999988888753
No 89
>PRK09989 hypothetical protein; Provisional
Probab=72.47 E-value=35 Score=35.77 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
.+++|++++++|++.|+...+|. .+.+++.++++++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999843322 2467888999999999874
No 90
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=72.36 E-value=6 Score=46.65 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=50.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCcce--------eeccc----ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGHY--------NFEGS----YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~G~y--------dF~g~----~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
.++.=++.|..|+..-||.|+.| ..|.||.|-|+.= |+.++ .-+..+|+.|++.|+.++.=--=|.+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 34677889999999999999999 7799999987644 22332 35789999999999999854332333
Q ss_pred ccc--CCCCCCeEecc
Q 004777 123 AEW--NFGGFPVWLKY 136 (731)
Q Consensus 123 aEw--~~GG~P~WL~~ 136 (731)
-+. ..|=.|.|-+-
T Consensus 196 ~~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLY 211 (559)
T ss_dssp ETT--S--SS-GGBEE
T ss_pred ccCcccccCCchhhhh
Confidence 333 35667888763
No 91
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=72.35 E-value=12 Score=48.38 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=61.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-CC-CCCC--CCccee----e----cccccHHHHHHHHHHc-CCEEEeccCccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-WN-GHEP--SPGHYN----F----EGSYDLVRFIKTVQRV-GLYAHLRIGPYV 121 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t-yv~-Wn-~hEp--~~G~yd----F----~g~~dl~~fl~la~~~-GL~vilr~GPYi 121 (731)
+-+.|+++|..+|++|.|+|.. .++ =. ...| ..+++. | .|..|+.++++.|++. ||++|+-.
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv---- 205 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI---- 205 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe----
Confidence 5588999999999999999986 333 11 0000 112222 3 3567899999999996 99999874
Q ss_pred ccccCCCCC-CeEecccCCeeeecCChhHHHHH
Q 004777 122 CAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAM 153 (731)
Q Consensus 122 caEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~ 153 (731)
=|+.=+. =.||.++|+.-....+.+||+..
T Consensus 206 --V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 206 --VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred --eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 2444443 35888888755555566666554
No 92
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=72.30 E-value=7 Score=46.15 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHCCCCEEEE-cccCCCCCCCC-cce----------eecccccHHHHHHHHHHcCCEEEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSP-GHY----------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~-G~y----------dF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.-+.++|.-+|++|+++|-. .|+-+ |.. .-| +|....||.+|++.|+++||+|||-.
T Consensus 33 ~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 33 RGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44668899999999999987 44422 111 112 24455799999999999999999875
No 93
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=72.27 E-value=5.9 Score=34.77 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=34.9
Q ss_pred ceeeeCCcceEEEEEECCEEEEEEEcccccceeEEeecccc-cCCCCEEEEEEecCCcc
Q 004777 494 PTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANL-RAGINKIALLSIAVGLP 551 (731)
Q Consensus 494 ~~L~i~~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l-~~g~n~L~ILvEn~Gr~ 551 (731)
..|++.+-...++-||||+++|...... .+.+ .+ ..|.++|++ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 4566654466999999999998765432 2322 34 668899988 7888874
No 94
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=71.40 E-value=5.3 Score=46.93 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=42.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCC-Ccce----------eecccccHHHHHHHHHHcCCEEEec
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPS-PGHY----------NFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~-~G~y----------dF~g~~dl~~fl~la~~~GL~vilr 116 (731)
.=.-+.++|.-+|++|+|+|-. .|+ .. +. ..-| .|.+..|+.+|++.|++.||+|||-
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3455778999999999999987 343 10 10 1112 2455679999999999999999985
No 95
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=70.90 E-value=9.5 Score=41.86 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=45.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCcceeec-c-cccHHHHHHHHHHcCCEEEecc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFE-G-SYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~ydF~-g-~~dl~~fl~la~~~GL~vilr~ 117 (731)
.++.-++.|+.+|+.|+|+|-+ .|.+....|..-+..-. . ..|+.++++.++++|+|+|.|+
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 4566788999999999999875 34454444433222222 1 3699999999999999999997
No 96
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.76 E-value=21 Score=40.26 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
...+.|+++|+.+|++||+.... |..-+. .+.- ..|...++.|++.|+++++-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~~d--~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGSSD--SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----ecccCC--cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37899999999999999999998 555222 2322 378899999999999999886
No 97
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=69.37 E-value=9.4 Score=40.17 Aligned_cols=52 Identities=12% Similarity=0.340 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
...++-|+.+|+.||++|+. ..|..+++ ..+..++|+.+++.||.|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56677788999999999998 56666665 347889999999999999999874
No 98
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.28 E-value=43 Score=36.34 Aligned_cols=69 Identities=17% Similarity=0.379 Sum_probs=54.0
Q ss_pred CCCCHhHHHHHHHHHHHCCC--CEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccccc
Q 004777 53 PRSTPEMWEDLIRKAKDGGL--DVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~--N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYicaE 124 (731)
...+.+.-++.++++++.|+ ++|-.=..|- ..-|.|.|+-. -|..++++..++.|+++++-.=|||+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 45688888999999999996 4666555553 34566666532 4899999999999999999999999864
No 99
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=68.75 E-value=20 Score=35.61 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=30.9
Q ss_pred ceeeeCCcceEEEEEECCEEEEEEEc-----ccccc--eeEEeecccccCCCCEEEEEEecCCc
Q 004777 494 PTLTVESAGHAVHVFINGQFLGSAFG-----TRENR--RFTFSGPANLRAGINKIALLSIAVGL 550 (731)
Q Consensus 494 ~~L~i~~~~D~a~VfVNg~~vG~~~~-----~~~~~--~~~~~~~i~l~~g~n~L~ILvEn~Gr 550 (731)
+.|.|.+.+ +..+||||+.+|.-.= +..+. ..++.+.--|++|.|+|.|++-+-..
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 456665433 6789999999997541 11111 12333333477899999999976444
No 100
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=68.74 E-value=7.6 Score=45.06 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCC---CcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~---~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
.++++++.||++|+++-|.=|-|+.-=|. .+.-+=+|..-...+|+...++|+..++-. | =|+ +|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---HwD---lPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HWD---LPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cCC---CCHHHH
Confidence 58899999999999999999999987664 356888888888999999999999876653 1 243 788886
Q ss_pred c-cCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 004777 136 Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (731)
Q Consensus 136 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (731)
+ ..+-.-+..=..|+++++--|++...++| .+..=|-+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 34432233345688888888888888888 55444666665554
No 101
>PLN02361 alpha-amylase
Probab=67.68 E-value=11 Score=42.83 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCC---CCCCCCcc-ee----ecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWN---GHEPSPGH-YN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn---~hEp~~G~-yd----F~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.+.|.-+|++|+++|-..=+.. .|--.+.. |+ |....+|.++++.|++.||.||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4567778999999998743322 12112221 22 4455799999999999999999865
No 102
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.05 E-value=2.7 Score=49.59 Aligned_cols=30 Identities=37% Similarity=0.584 Sum_probs=27.0
Q ss_pred ccccccCCCCCCCCCCCCchhHHHHHHHHH
Q 004777 310 ITTSYDYDAPLDEYGLMRQPKYGHLKQLHE 339 (731)
Q Consensus 310 ~~TSYDYdApl~E~G~~~~~Ky~~lr~l~~ 339 (731)
..|||||+||+.|+|+++++||.++|+...
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~C~ 354 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREACA 354 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhHHH
Confidence 689999999999999988999999995543
No 103
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.03 E-value=95 Score=32.90 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=50.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcce--eecc--cccHHHHHHHHHHcCCEEEeccCccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEG--SYDLVRFIKTVQRVGLYAHLRIGPYV 121 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y--dF~g--~~dl~~fl~la~~~GL~vilr~GPYi 121 (731)
..+..++.++++++.|+..=...+-+.+.+. -+.| +|+- --|..++++..++.|++|++-.=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6778899999999999886666666555543 3555 5542 24899999999999999999988887
No 104
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=66.99 E-value=2 Score=44.74 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
-...+++.++|.+.|.+.++|..-.+..-.+..+ ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4578899999999999999997665555444455 8999999999999999999
No 105
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=64.36 E-value=14 Score=45.89 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=46.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCcc------ee-------ecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGH------YN-------FEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~G~------yd-------F~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
.+-+.+.++|.-+|++|+|+|-.- ++ +..+|. .| |.+..++.+|++.|+++||.|||-.=|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 355779999999999999999872 32 222221 12 446789999999999999999998654
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.28 E-value=23 Score=28.95 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
|..-.+.++.+.+.|+|...+|++ .++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~--~~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIA--DTSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEE--ecCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 455678889999999999999973 2333 58888766 5788999999999988754
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=63.24 E-value=10 Score=48.98 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEE-cccCCCCCCC---Ccc-----ee----------ec--ccccHHHHHHHHHHcCCEEEecc
Q 004777 62 DLIRKAKDGGLDVIDT-YVFWNGHEPS---PGH-----YN----------FE--GSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~t-yv~Wn~hEp~---~G~-----yd----------F~--g~~dl~~fl~la~~~GL~vilr~ 117 (731)
..|.-+|++|+|+|+. .|+=+..|.. .|. || |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999997 5552222211 110 21 23 56789999999999999999974
No 108
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.49 E-value=86 Score=33.83 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=50.9
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC--------CCcceeeccc--ccHHHHHHHHHHcCCEEEec
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--------SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp--------~~G~ydF~g~--~dl~~fl~la~~~GL~vilr 116 (731)
+|..|. +.+.-++.++++|+.||-+=-+++-..+|.- .-+.|.|+-. -|..++++..++.|++|++-
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 344552 6777889999999999877666654343331 2346777643 49999999999999999987
Q ss_pred cCcc
Q 004777 117 IGPY 120 (731)
Q Consensus 117 ~GPY 120 (731)
+=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 6444
No 109
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=62.05 E-value=21 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.499 Sum_probs=23.9
Q ss_pred CcceEEEEEECCEEEEEEEccccc--ceeEEee
Q 004777 500 SAGHAVHVFINGQFLGSAFGTREN--RRFTFSG 530 (731)
Q Consensus 500 ~~~D~a~VfVNg~~vG~~~~~~~~--~~~~~~~ 530 (731)
...|.|-||++++|+|+++++..+ .++.|++
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 668999999999999999987543 3455543
No 110
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=62.04 E-value=1.1e+02 Score=34.84 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=58.7
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCC----cceeeccc---ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGS---YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~----G~ydF~g~---~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
-+|+.++.+.-.+.++++|++|++.+.+==-|....... |.+--+-. .-|..+.+.+++.||..=|...|-++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456778888899999999999999887766686542221 33322211 13999999999999999888877654
Q ss_pred cccC--CCCCCeEecccCC
Q 004777 123 AEWN--FGGFPVWLKYVPG 139 (731)
Q Consensus 123 aEw~--~GG~P~WL~~~p~ 139 (731)
++=. +-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 3211 2347999987654
No 111
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=61.59 E-value=11 Score=45.76 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCC---CCCc-----ce---e-------e---cccccHHHHHHHHHHcCCEEEecc
Q 004777 63 LIRKAKDGGLDVIDT-YVFWNGHE---PSPG-----HY---N-------F---EGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~t-yv~Wn~hE---p~~G-----~y---d-------F---~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.|.-+|++|+|+|+. .|+=...+ ...| -| | | ....+|.+|++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999997 45411111 1111 01 1 1 124689999999999999999985
No 112
>PRK12677 xylose isomerase; Provisional
Probab=60.91 E-value=56 Score=36.88 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeec---ccccHHHHHHHHHHcCCEEE-eccCcccccccCCCCCCeEe
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWL 134 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~---g~~dl~~fl~la~~~GL~vi-lr~GPYicaEw~~GG~P~WL 134 (731)
-+++.+++++++|+..|+.. .+..--|+.+ -.+.+.++.+++++.||.|. +-|.-|.+..+..|+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~----- 100 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA----- 100 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc-----
Confidence 36789999999999999883 1111112211 11358899999999999976 444322122222332
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 -------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 -------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445577777776666666666555
No 113
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=60.73 E-value=18 Score=44.56 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=45.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCC----CCCCCC-----cceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWN----GHEPSP-----GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn----~hEp~~-----G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
+-+.+.+.|.-++++|+++|.. .|+=+ .|--.. =.-.|.+..++.+|++.|+++||.||+-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4567899999999999999976 33211 111000 0113557789999999999999999988644
No 114
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.67 E-value=35 Score=35.90 Aligned_cols=88 Identities=16% Similarity=0.343 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCC--cceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEe
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP--GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~--G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL 134 (731)
.-.|+++|.-+|++||+.|+. +..|.-+ -+-||+. .-.-.+.+++.+.|+. + |-+|-
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~----i-pSmCl----------- 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVR----I-PSMCL----------- 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCC----c-cchhh-----------
Confidence 456999999999999999999 7777755 3677873 2445778889999983 2 33331
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
..+....+-|.|+.-++...+.+.+-+..-.
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~ 106 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ 106 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111112557899988888777777665555
No 115
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=58.31 E-value=21 Score=38.66 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=42.3
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCC---CCCCCCc--------ceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWN---GHEPSPG--------HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn---~hEp~~G--------~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.|.-| .+..-..+++.+|..|+|++-.-+==. +.=|... +=.| .|+..||+.|+|.|||+|.|+
T Consensus 70 Ah~v~-~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 70 AHSVA-LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ehhhc-ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 34433 445567799999999999986532110 1111111 1123 499999999999999999996
No 116
>PRK03705 glycogen debranching enzyme; Provisional
Probab=57.25 E-value=16 Score=44.07 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-----ce----------eeccc-----ccHHHHHHHHHHcCCEEEecc
Q 004777 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----HY----------NFEGS-----YDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~t-yv~Wn~hEp~~---G-----~y----------dF~g~-----~dl~~fl~la~~~GL~vilr~ 117 (731)
.|.-+|++|+|+|+. .|+=...++.. | -| .|... .++.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999997 44311111110 0 01 12221 479999999999999999874
No 117
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=56.09 E-value=25 Score=38.48 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=50.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--ceeecccc--cHHHHHHHHHHcCCEEEeccCcccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSY--DLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~ydF~g~~--dl~~fl~la~~~GL~vilr~GPYic 122 (731)
..+.-++.++++++.||.+=.+.+-|.+.. ..+ .|+|+-.+ |..++++..++.|++|++-.=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 667778999999999887755555555443 344 77776443 9999999999999999987767763
No 118
>PLN00196 alpha-amylase; Provisional
Probab=55.98 E-value=24 Score=40.43 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCC--CCCCCCcc-ee-----ecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDTY-VFWN--GHEPSPGH-YN-----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~ty-v~Wn--~hEp~~G~-yd-----F~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.+.|.-+|++|+++|-.- ++=+ .|--.+.. |+ |....+|.++++.|++.||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 577888999999999874 3322 12222221 22 3344699999999999999999875
No 119
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.94 E-value=73 Score=34.60 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCCC-CCC--CcceeecccccHHHHHHHHHHcCCEEEeccCccccccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGH-EPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEW 125 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~h-Ep~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw 125 (731)
+.++-++.|+.|...|+|.+..|+- +.-+ |-. +|.|.= .|+.++++.|++.|+.||..+==.-+.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 4678899999999999999998753 3222 111 334433 49999999999999999977543334443
No 120
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=55.04 E-value=24 Score=46.76 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=46.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcc---e----------eecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH---Y----------NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~---y----------dF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
+-+.|.+.|.-+|++|+|+|-.-=++ +..+|. | .|.+..|+.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 66789999999999999999873112 222331 2 2557789999999999999999987644
No 121
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.83 E-value=51 Score=35.32 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=59.1
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeec--ccccHHHHHHHHHHcCCE
Q 004777 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIKTVQRVGLY 112 (731)
Q Consensus 35 ~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~--g~~dl~~fl~la~~~GL~ 112 (731)
.+.+.+.+++++.|=.=- -.++.-.+.-+++|++|+..++.|.+=+... -+.|. |...+..+-+.|++.||.
T Consensus 20 ~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred CEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCCC
Confidence 366766788888883321 1577788889999999999999987653333 34666 578899999999999999
Q ss_pred EEecc
Q 004777 113 AHLRI 117 (731)
Q Consensus 113 vilr~ 117 (731)
++-.|
T Consensus 94 ~~te~ 98 (266)
T PRK13398 94 VVTEV 98 (266)
T ss_pred EEEee
Confidence 98876
No 122
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=54.56 E-value=38 Score=37.55 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=58.4
Q ss_pred cEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecc--cccHHHHHHHHHHcCC
Q 004777 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKTVQRVGL 111 (731)
Q Consensus 35 ~f~ldG~~~~~~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g--~~dl~~fl~la~~~GL 111 (731)
.+.+.|.++.++.| +--+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 46677788888888 2222 57777788889999999999999884 4333477875 5678778888999999
Q ss_pred EEEecc
Q 004777 112 YAHLRI 117 (731)
Q Consensus 112 ~vilr~ 117 (731)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988875
No 123
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=54.47 E-value=57 Score=39.54 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHCCCCEEE---------------EcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 58 EMWEDLIRKAKDGGLDVID---------------TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~---------------tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
+.-...|+.+|++|+|||- .|++| -|=| |+-|.= |- -...++.+.|+.|..+-.||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f---~~-~aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLF---NR-VAWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCc---CH-HHHHHHHhhCCEEEEeccceee
Confidence 4567789999999999996 45667 3333 222211 11 1355689999999999999853
Q ss_pred c---------ccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 004777 123 A---------EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (731)
Q Consensus 123 a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 185 (731)
. +++..+-|+-.. |+--.| =.+|..++++|++.|..-|+++ .+|=++|..-+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 1 222222222211 110112 2457789999999999888842 25555665554
No 124
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=53.89 E-value=17 Score=31.84 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=24.9
Q ss_pred cCCCceEEeccccc-ccCCc----ccCCc-chHHHHHHHHH---HHhcCCCCcceee
Q 004777 172 SQGGPIILSQIENE-YGPES----KSLGA-AGHAYVNWAAK---MAVGLDTGVPWVM 219 (731)
Q Consensus 172 ~~gGpII~~QiENE-yg~~~----~~~~~-~~~~y~~~l~~---~~~~~g~~vp~~~ 219 (731)
++...|.+|+|-|| -++.. ...+. ....|.+||++ .+|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 44568999999999 55221 11111 12345555554 5567788888754
No 125
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=53.65 E-value=12 Score=31.29 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=27.8
Q ss_pred eeeeCCcceEEEEEECCEEEEEEEcccccceeEEeecccccCCCCEEEEEEecCCccc
Q 004777 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPN 552 (731)
Q Consensus 495 ~L~i~~~~D~a~VfVNg~~vG~~~~~~~~~~~~~~~~i~l~~g~n~L~ILvEn~Gr~N 552 (731)
.|.|.+.=..|.|||||+++|... ..+. .+..|.++|.| +.-|...
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~ 48 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEP 48 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCee
Confidence 455655556789999999999431 1221 14567665554 4455444
No 126
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.36 E-value=33 Score=37.48 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=49.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-----CCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-----~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
..+..++.++++|+.||-+=.+.+-+.++.. .-|.|+|+-. -|..++++..+++|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5677899999999999876555554333332 2346666533 38999999999999999998877774
No 127
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=52.28 E-value=23 Score=45.14 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHcCCEEEecc
Q 004777 97 YDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 97 ~dl~~fl~la~~~GL~vilr~ 117 (731)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999985
No 128
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=51.64 E-value=46 Score=27.29 Aligned_cols=44 Identities=27% Similarity=0.451 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
.++.++++|+.|+++|-+ .-|.- +. ...++.+++++.|+.||..
T Consensus 17 ~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 17 PEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEEE
Confidence 568899999999999988 55542 22 4568889999999988743
No 129
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=51.55 E-value=33 Score=37.94 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=56.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccc--cH--HHHHHHHHHcCCEEEeccCcccc
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY--DL--VRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~--dl--~~fl~la~~~GL~vilr~GPYic 122 (731)
+|..|. +.+..++.++++++.||.+=...+-+.++.. .+.|.|+..+ |. .++++..++.|++|++-.=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 5777899999999999877666555444433 4677776543 77 99999999999999998888886
Q ss_pred cc
Q 004777 123 AE 124 (731)
Q Consensus 123 aE 124 (731)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 130
>PRK09875 putative hydrolase; Provisional
Probab=51.32 E-value=1.1e+02 Score=33.30 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=59.8
Q ss_pred eEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHH
Q 004777 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (731)
Q Consensus 28 ~v~~d~~~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~ 107 (731)
.+++-+..++++..++. +......-..+.-...|+.+|++|.+||=- ..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHH
Confidence 56667777777664322 112221224555667889999999998832 222 112479999999999
Q ss_pred HcCCEEEeccCcccccccCCCCCCeEecc
Q 004777 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (731)
Q Consensus 108 ~~GL~vilr~GPYicaEw~~GG~P~WL~~ 136 (731)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885332 5777763
No 131
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=50.04 E-value=24 Score=37.67 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=41.3
Q ss_pred hhhhccCC---CCCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEE
Q 004777 459 LLEQINIT---RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGS 516 (731)
Q Consensus 459 ~mEql~~t---~d~~GyllYrt~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVNg~~vG~ 516 (731)
.+-++++. +|-+|.+||+-++....+.. ...++...|++.++|..|.|||||.-+=.
T Consensus 73 s~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~ 132 (297)
T KOG2024|consen 73 SFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALE 132 (297)
T ss_pred chhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecc
Confidence 35555543 46789999999998865542 22334578999999999999999976533
No 132
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=49.92 E-value=65 Score=33.33 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=65.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeec-ccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEe
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL 134 (731)
.+..++..++.++++|+..+-+|..... ....+..+ |..|=..-+++|+++|+ -+ |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEEE
Confidence 5788999999999999999999988765 23333443 77899999999999998 22 234444
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 004777 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNE 167 (731)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~ 167 (731)
.-+.+. .+..+...+..||+.+...|...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 23347788999999998888843
No 133
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=49.60 E-value=32 Score=38.15 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=67.6
Q ss_pred EEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHH
Q 004777 74 VIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAM 153 (731)
Q Consensus 74 ~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~ 153 (731)
.|.+.|.|+++--+. -=...++.|+++|+.|+-- |.-||+ +-+.|+.. .+.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~----lL~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED----FLKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH----Hhcc-Cc---ccc
Confidence 477889999853221 0127799999999999753 245776 33456543 1221 11 123
Q ss_pred HHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHHHHHHHHHHhcC--CCCccee
Q 004777 154 QGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL--DTGVPWV 218 (731)
Q Consensus 154 ~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~ 218 (731)
.++.++|+++.+.+.+ .| +.+-+||..+... ..+.=+++++.|++.+++. +..|-|+
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 5778888888885443 24 7788888873110 0123355777777777664 2344455
No 134
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=49.28 E-value=37 Score=37.44 Aligned_cols=68 Identities=6% Similarity=0.024 Sum_probs=52.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYicaE 124 (731)
..+.-++.++++++.||.+=...+-+.+ ....+.|+|+-. -|..++++..++.|++|++-.=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 5677889999999999877666554332 234566777643 2899999999999999999988888753
No 135
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=48.07 E-value=67 Score=34.64 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=67.4
Q ss_pred EEEEEEecCCCC---CHhHH-HHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 44 ILISGSIHYPRS---TPEMW-EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 44 ~~~sG~~Hy~r~---~~~~W-~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
+-+++..|+..- +.... .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 467777777552 22222 23555544799999999433 3333 7789999999997665445554
Q ss_pred ccc---------cccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 120 YVC---------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 120 Yic---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
..+ +||..--+|.|+.+.=. ....+++...+.--++..+++..+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 67887778999976200 0112334455666677777777777
No 136
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=47.16 E-value=42 Score=36.69 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=53.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
+|..|. ..+..++.++++++.++-.=...+-+.+.. .-+.|+|+-. -|..++++..++.|++|++-.=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 345554 677789999999999987655554433322 3466777643 48999999999999999988877774
No 137
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=46.94 E-value=3.3e+02 Score=30.16 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=28.1
Q ss_pred cCCcEEECCEEeEEEEEEecCCCC-CHhHHHHHH-HHHHHCCCCEEEE
Q 004777 32 DRKAILINGQRRILISGSIHYPRS-TPEMWEDLI-RKAKDGGLDVIDT 77 (731)
Q Consensus 32 d~~~f~ldG~~~~~~sG~~Hy~r~-~~~~W~~~l-~k~Ka~G~N~V~t 77 (731)
|.+++.|||||+++|=. ..-+ ....+-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~---p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYR---PGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEEC---cccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 67999999999998833 3222 222333333 5678999996554
No 138
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=46.56 E-value=45 Score=40.07 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=55.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE---ccc---CC--CCCCCCcceee---------cccccHHHHHHHHHHcCCEEEeccC
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT---YVF---WN--GHEPSPGHYNF---------EGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t---yv~---Wn--~hEp~~G~ydF---------~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.+..|+ .+|++|+++|-+ |.- |. +-.-.-|-||= ....|++++++.|+++||.||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 567775 688899999986 222 32 22223455663 3346999999999999999997643
Q ss_pred --------cccccccCCCCCCeEec
Q 004777 119 --------PYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 119 --------PYicaEw~~GG~P~WL~ 135 (731)
||.-||.+.+-+|.|..
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 38889999888888884
No 139
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=46.31 E-value=1.5e+02 Score=30.87 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=34.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 114 (731)
++.+++ .++.|+++|+|++.+- |=|| ||| |..-|.+.++.+++.|+..+
T Consensus 59 f~~~~~----~~~~l~~~G~d~~~la---NNH~-----fD~-G~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 59 FRAPPE----NAAALKAAGFDVVSLA---NNHS-----LDY-GEEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEec---cCcc-----ccc-chHHHHHHHHHHHHCCCCEe
Confidence 466665 4779999999999882 1333 444 34457788888888888765
No 140
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.82 E-value=54 Score=35.80 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCC---CCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEP---SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp---~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
.+.-++.++++++.||-+=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++-.=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456788999999999977666554333322 1234566432 48999999999999999999888875
No 141
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=45.33 E-value=64 Score=35.09 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=59.4
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcC--CEEEeccCc--------ccccccCCCCCCe
Q 004777 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGP--------YVCAEWNFGGFPV 132 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~G--L~vilr~GP--------YicaEw~~GG~P~ 132 (731)
+|++-.++|.+.+.|-.| ||.+ .+.+|++.|++.| +.|+..+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 566666799999988332 4444 7889999999999 556666666 34 6778888999
Q ss_pred EecccCCeeeecCC-hhHHHHHHHHHHHHHHHHHh
Q 004777 133 WLKYVPGISFRTDN-GPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 133 WL~~~p~~~~R~~d-~~y~~~~~~~~~~l~~~l~~ 166 (731)
|+.+.=+ +. .+| ...+++--++..+++..+.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9976211 01 133 33555666777777777763
No 142
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=44.95 E-value=40 Score=34.78 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
..++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 34799999999998 888877 4444 69999999999999999987
No 143
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=44.73 E-value=1.2e+02 Score=33.47 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=56.6
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
+|..|. +.+..++.++++++.+|-.=.+++-|.++. .-+.|.|+.. -|..++++..++.|+++++-.=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455564 678889999999999987766666666554 3467777654 38899999999999999998889887
No 144
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=44.06 E-value=74 Score=38.19 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=75.4
Q ss_pred EEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcc
Q 004777 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (731)
Q Consensus 41 ~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPY 120 (731)
++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|-.+++. + .+.+|++.+++.++.+|.-+-|-
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999887766665556777777899999999555433 3 67888888888888888888773
Q ss_pred cc--------cccCCCCCCeEeccc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 121 VC--------AEWNFGGFPVWLKYV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 121 ic--------aEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
.. .+|..-=+|.|+.+. .. .. +....+++--++..+++..++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 32 335555579988762 11 11 223566677777777777766
No 145
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=43.48 E-value=40 Score=42.20 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHcCCEEEecc
Q 004777 97 YDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 97 ~dl~~fl~la~~~GL~vilr~ 117 (731)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 146
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=43.46 E-value=53 Score=36.21 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=52.4
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCccccc
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYica 123 (731)
+|..|. +.+..++.++++++.||-.=...+-+.+.. .-+.|+|+-. -|..++++..++.|++|++-.=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 667788999999999987644444433332 3445666543 378999999999999999888787753
No 147
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=42.78 E-value=1.2e+02 Score=34.35 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=65.5
Q ss_pred CCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCee--ee-cC--ChhHHHHHHHHHHHH
Q 004777 86 PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGIS--FR-TD--NGPFKVAMQGFTQKI 160 (731)
Q Consensus 86 p~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~--~R-~~--d~~y~~~~~~~~~~l 160 (731)
+..|.|||+.+..=+.||+.|++.|...++-. .=-.|.|++...... -+ .+ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 46789999877777789999999999877653 223678887532110 00 11 134556667777777
Q ss_pred HHHHHhccccccCCCceEEecccccccCCc-------ccCC-cchHHHHHHHHHHHhcCCCCcceeeeCC
Q 004777 161 VQMMKNEKLFASQGGPIILSQIENEYGPES-------KSLG-AAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (731)
Q Consensus 161 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 222 (731)
+++++.+ |=+|=-+--=||..... +.+. +...+.++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 7777633 32555556668875321 1111 1345688889999998898876655553
No 148
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=42.43 E-value=41 Score=35.75 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=35.3
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.+++|++|++.|-. +|-|.+. .|. +.+..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII----GHSERRQ-YFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe----CcccccC-ccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999998 7777664 221 2233444445559999999999987
No 149
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=41.37 E-value=67 Score=35.41 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=46.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCccee--------ecccccHHHHHHHHHHcCCEEEecc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYN--------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp------~~G~yd--------F~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.+..++.|+.|-..++|+...++- |.+.-+ ..|.+. |=-..|+.++++.|++.|+.||..+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7899999999999999999999874 654322 123221 1113599999999999999999775
No 150
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=41.11 E-value=33 Score=39.14 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCCEEEE-ccc---CCCCCCCCcc---e--eecccccHHHHHHHHHHcCCEEEecc
Q 004777 62 DLIRKAKDGGLDVIDT-YVF---WNGHEPSPGH---Y--NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~t-yv~---Wn~hEp~~G~---y--dF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.|.-+|++|+++|-+ .++ -..|---.-. . .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999965 222 1122111100 0 57778899999999999999999774
No 151
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=40.96 E-value=40 Score=35.39 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCC----cceeecccccHHHHHHHHHHcCCEEEecc-Ccc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGSYDLVRFIKTVQRVGLYAHLRI-GPY 120 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~----G~ydF~g~~dl~~fl~la~~~GL~vilr~-GPY 120 (731)
+.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+ +|+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 35667889999999999966 22232111 112211 1368999999999999999997 444
No 152
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=40.63 E-value=52 Score=34.76 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.+++|++|++.|-. +|-|.+.- |. +.+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~~-f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERRQY-FG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----CcccccCc-CC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 34799999999998 77776641 21 2466899999999999999999987
No 153
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=40.30 E-value=31 Score=34.38 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCceEEEEEcCeeeeeeecccccCCCCCCCCCCCcCCccccCCCCCCcceeeecCccccccCceEEEecCCCCcccccce
Q 004777 644 SMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYYLKTNEYCTDIWIDVLDEPCSNNVLDLA 723 (731)
Q Consensus 644 g~gKG~vwVNG~nLGRYWp~~~~~~~~~c~y~G~y~~~~c~~~cg~PsQ~~YhVP~~~L~~~~~~~~~~~~~~~~~~~~~ 723 (731)
.-++=+|.||| ..+..+... -..++|.||+ -+-+|+..--.|.||.+.|+.+.|...|.-+.... ...
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~gs~--~~~ 158 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FGNDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSGSG--LSP 158 (167)
T ss_dssp TT-EEEEEETT-EE-------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S-G--GSS
T ss_pred CCCCEEEEEcC-ccCCccccc--cCCCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccCCC--ccC
Confidence 34677899999 777766322 1123555544 12334565667999999999998555554442222 555
Q ss_pred eeec
Q 004777 724 GIMF 727 (731)
Q Consensus 724 ~~~~ 727 (731)
+||+
T Consensus 159 gvmy 162 (167)
T PF14683_consen 159 GVMY 162 (167)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
No 154
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=40.14 E-value=99 Score=35.42 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=57.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC--------Ccceee-----ccc-----ccHHHHHHHHH-HcCCEEEec
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--------PGHYNF-----EGS-----YDLVRFIKTVQ-RVGLYAHLR 116 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--------~G~ydF-----~g~-----~dl~~fl~la~-~~GL~vilr 116 (731)
+-+.|+++|+.++++|.|+|..- -++|.- ..+..| +.. .++.++++.++ ++||.++.-
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHft---Plq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFT---PLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEec---ccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 55799999999999999999851 112211 112222 111 48999999985 799998766
Q ss_pred cCcccccccCCCCC-CeEecccCCeeeecCChhHHHHH
Q 004777 117 IGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAM 153 (731)
Q Consensus 117 ~GPYicaEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~ 153 (731)
. =|+.-.. =.||.++|+.-.-..+.++++..
T Consensus 97 v------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 97 V------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred E------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 4 1444332 46999999865555556666544
No 155
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=39.08 E-value=73 Score=34.58 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=47.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC----------------CCcceeecccccHHHHHHHHHHcCCEEE
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP----------------SPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp----------------~~G~ydF~g~~dl~~fl~la~~~GL~vi 114 (731)
.+.+..++.|+.|-..++|+++.++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 37788999999999999999999987 754321 1223443 499999999999999999
Q ss_pred ecc
Q 004777 115 LRI 117 (731)
Q Consensus 115 lr~ 117 (731)
..+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 765
No 156
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.97 E-value=1e+02 Score=33.81 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=44.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc--CCCC---CC------------------------CCcceeecccccHHHHHHHH
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVF--WNGH---EP------------------------SPGHYNFEGSYDLVRFIKTV 106 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~h---Ep------------------------~~G~ydF~g~~dl~~fl~la 106 (731)
+.+..++.|+.|-..++|++..++- |.+- .| ..|.|. ..|+.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7899999999999999999997654 3321 11 122232 24999999999
Q ss_pred HHcCCEEEecc
Q 004777 107 QRVGLYAHLRI 117 (731)
Q Consensus 107 ~~~GL~vilr~ 117 (731)
++.|+.||..+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999765
No 157
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=38.80 E-value=6.2e+02 Score=28.59 Aligned_cols=86 Identities=12% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHcCCEEEeccCcccccccCCCCCCeEecccCCe------eee-cCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 004777 106 VQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI------SFR-TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (731)
Q Consensus 106 a~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~------~~R-~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 178 (731)
+-..|+.|+.-| |+ .|+|+...-.+ +|| ...++|.++..+|+.+ ++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~----m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLE----MK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHH----HH------hCCCcee
Confidence 667899999987 75 89999763221 343 3345565555555443 34 4677898
Q ss_pred EecccccccCCcccCCc---chHHHHHHHHHHHhcCC
Q 004777 179 LSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (731)
Q Consensus 179 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (731)
+..|.||..... .|+. ...+.++.+++-++...
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 889999976432 1221 23556666666666544
No 158
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=38.42 E-value=15 Score=31.93 Aligned_cols=39 Identities=21% Similarity=0.571 Sum_probs=28.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCC
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGL 111 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL 111 (731)
....|-.-+|.+-. .||.|..|||. +|.+||++|.|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 56779888877653 58999999999 99999999987543
No 159
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=38.26 E-value=47 Score=35.43 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--CCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWN--GHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn--~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 5678899999999998865511 111111223444 566778999999998643
No 160
>PRK09267 flavodoxin FldA; Validated
Probab=37.69 E-value=2.5e+02 Score=27.34 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=49.3
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE
Q 004777 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 38 ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 114 (731)
++.-..++++...|....++..|.+-+.+++...++-..+.+|= ......-.-.|. .-+..+-+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556788999999878778889988888888777777777773 221111001122 236667778888897654
No 161
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.66 E-value=70 Score=36.33 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=47.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCccccccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAEW 125 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYicaEw 125 (731)
..+...+.++.+|+.|+-.=...+-..+.. ..+.|.|+.. -|+.++++.+++.|++|++-.=|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 577788999999999988776665534333 4456666543 28999999999999999999888775443
No 162
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=37.65 E-value=81 Score=34.16 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=43.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC--CCc--ceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--SPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp--~~G--~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999875432111 112 2332 378899999999999887763
No 163
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.17 E-value=1.3e+02 Score=33.43 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=46.0
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC----------------------------CCcceeecccccHHHH
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP----------------------------SPGHYNFEGSYDLVRF 102 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp----------------------------~~G~ydF~g~~dl~~f 102 (731)
.+.+..++.|+.|...++|+...++. |.+--+ ..|.|-- .|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36889999999999999999998763 432111 1233433 499999
Q ss_pred HHHHHHcCCEEEecc
Q 004777 103 IKTVQRVGLYAHLRI 117 (731)
Q Consensus 103 l~la~~~GL~vilr~ 117 (731)
++.|++.|+.||..+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999775
No 164
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=37.03 E-value=84 Score=30.12 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=46.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeec-ccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEe
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL 134 (731)
.+.+.+..++.|+++|+..+-+|.....+. ......++ |..|=..-+..|+++|+. -|-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP---------------AGTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT-----------------SS-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC---------------CCCEEEE
Confidence 468889999999999999999998772221 11122222 668889999999999983 1334444
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 004777 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (731)
--+-+ ..+..+...+..|++.+...|..
T Consensus 100 avD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 32211 25677788888889888888874
No 165
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=37.01 E-value=1.2e+02 Score=31.73 Aligned_cols=94 Identities=7% Similarity=-0.005 Sum_probs=54.2
Q ss_pred Ccceeec-ccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 004777 88 PGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 88 ~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (731)
.|...+. +..++..+++.|++.|++|++.+|= |..+. +.. + ..++. ..++|.+.+++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h---hcCHH---HHHHHHHHHHHHHHH
Confidence 5666664 3357889999999999999999861 22211 110 0 12333 345788999998986
Q ss_pred ccccccCCCceEEecccccccCCcccCCcchHHHHHHHHHHHhc
Q 004777 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVG 210 (731)
Q Consensus 167 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 210 (731)
+++ =++.|+=|+.... ...=..+++.|++.+++
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKK 130 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhh
Confidence 544 2355666765321 11112345555555544
No 166
>PLN02877 alpha-amylase/limit dextrinase
Probab=36.73 E-value=65 Score=40.61 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHcCCEEEecc
Q 004777 97 YDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 97 ~dl~~fl~la~~~GL~vilr~ 117 (731)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999875
No 167
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=35.99 E-value=1.2e+02 Score=32.61 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=70.2
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeec---ccccHHHHHHHHHHcCCEEEeccCcccccccCCCCC-
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGF- 130 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~---g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~- 130 (731)
..-+..++-+.-+.++|+.-|-+=.-|...+ ....+||+ ...||.++++-|++.|..|+|.- + |+.||-
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhh
Confidence 3667788899999999999999988888722 23467775 34799999999999998888873 2 333221
Q ss_pred -C------eEecc-----cCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 004777 131 -P------VWLKY-----VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (731)
Q Consensus 131 -P------~WL~~-----~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 178 (731)
+ .+|.. +.++++=--+. --+.+-+|+++|++.-++++|+..=+|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 1 11111 23333211011 124567899999999999988777666654
No 168
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.37 E-value=41 Score=33.04 Aligned_cols=64 Identities=19% Similarity=0.076 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccC-CCCCCCCcceeec-ccccHHHHHHHHHHcCCEEEeccCcc
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFW-NGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPY 120 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~W-n~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPY 120 (731)
.+..++.++.++++|...|.+...+ +.+.+..-.-+++ -...|.++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 5678889999999999999886553 1222211111111 12478899999999999999998654
No 169
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=34.88 E-value=1.6e+02 Score=32.36 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=84.4
Q ss_pred eeEEEcCCcEEECCEEeEEEEEEec-CCCCC---HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHH
Q 004777 27 STVTYDRKAILINGQRRILISGSIH-YPRST---PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (731)
Q Consensus 27 ~~v~~d~~~f~ldG~~~~~~sG~~H-y~r~~---~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~f 102 (731)
..|++-+..+.+|. .- +-+.++ -+-.. .+.-..++...++.|.+||=. +.+ =.=.||..++
T Consensus 16 lGvTl~HEHl~~~~--~~-~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m 80 (316)
T COG1735 16 LGVTLMHEHLFIDP--YE-IAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATN----IGIGRDVLKM 80 (316)
T ss_pred ccceeehhhhccch--HH-HhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCc----cccCcCHHHH
Confidence 44666666676665 11 112222 11111 122334667777789998854 111 0112799999
Q ss_pred HHHHHHcCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 004777 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (731)
Q Consensus 103 l~la~~~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 182 (731)
.+.+++.||.++...|+|.-+.|+ .|+...| ++.+.+.+++.++. +=.|+=|..=|
T Consensus 81 ~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-----Gi~gT~ikAGi 136 (316)
T COG1735 81 RRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-----GIAGTGIKAGI 136 (316)
T ss_pred HHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-----cccCCccccce
Confidence 999999999999999999988875 6665433 44555555555551 11233333333
Q ss_pred cccccCCcccCCcchHHHHHHHHHHHhcC-CCCcceeeeCC
Q 004777 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCKE 222 (731)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~ 222 (731)
=-|-|.+.. ..+.. .+.|+..+++. ..++|+.+-.+
T Consensus 137 Ik~~~~~~~-iTp~E---ek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 137 IKEAGGSPA-ITPLE---EKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeccCccc-CCHHH---HHHHHHHHHHhhhcCCCeEEecc
Confidence 345554321 22222 33444444432 45889866553
No 170
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=34.47 E-value=1.2e+02 Score=30.54 Aligned_cols=89 Identities=16% Similarity=0.332 Sum_probs=55.1
Q ss_pred EEEEecCCCC-----CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCccee--ecc-cccHHHHHHHHHHcCCEEEecc
Q 004777 46 ISGSIHYPRS-----TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN--FEG-SYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 46 ~sG~~Hy~r~-----~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~yd--F~g-~~dl~~fl~la~~~GL~vilr~ 117 (731)
.-|.+||+|. +.++.+.-|+.+|..++..- ..|--.|..++.+. .+- ...+.+|++..+++|..+++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 3499999864 36667778888888654321 11222332233322 111 1467899999999999999998
Q ss_pred Ccccc----ccc---CCCCCCeEeccc
Q 004777 118 GPYVC----AEW---NFGGFPVWLKYV 137 (731)
Q Consensus 118 GPYic----aEw---~~GG~P~WL~~~ 137 (731)
+++-. +-. +....|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 145789999764
No 171
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.66 E-value=65 Score=33.86 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCC-cceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.+++.|+.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 5578889999999999998631100001111 01110 11468889999999999999987
No 172
>PLN02784 alpha-amylase
Probab=33.42 E-value=59 Score=40.36 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc--cee-------ecccccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYN-------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~yd-------F~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.++|..++++|+++|-..=+-....+ .| .+| |....+|..+++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55788899999999988533221111 12 122 3344799999999999999999875
No 173
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=33.35 E-value=57 Score=39.70 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=40.8
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-----------------ceeecc-----cccHHHHHHHHHHcCCEEEec
Q 004777 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----------------HYNFEG-----SYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~t-yv~Wn~hEp~~---G-----------------~ydF~g-----~~dl~~fl~la~~~GL~vilr 116 (731)
.|.-+|++|+++|+. .|+.-..|+.. | .|-=+. .+.+..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999997 67755555533 2 222223 247888999999999999998
Q ss_pred c
Q 004777 117 I 117 (731)
Q Consensus 117 ~ 117 (731)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 174
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=33.21 E-value=2e+02 Score=26.70 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=41.0
Q ss_pred EEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEcccc-----cceeEEeecccccC-CCCEEEEEE
Q 004777 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRE-----NRRFTFSGPANLRA-GINKIALLS 545 (731)
Q Consensus 472 yllYrt~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVNg~~vG~~~~~~~-----~~~~~~~~~i~l~~-g~n~L~ILv 545 (731)
.+.|++.|..+..+. -++.+. ..|.+.+||||+.+-...+... .........+.|.+ +.+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 567899998765552 133333 5678999999999977654321 00112222344555 467888776
Q ss_pred ecCC
Q 004777 546 IAVG 549 (731)
Q Consensus 546 En~G 549 (731)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 175
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.72 E-value=22 Score=39.93 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=55.5
Q ss_pred EEeEEEEEEecCCCCCHhHHHH-------HHHHHHHCC----CCEEEEc-cc-CCCCCCCCcceeec-------------
Q 004777 41 QRRILISGSIHYPRSTPEMWED-------LIRKAKDGG----LDVIDTY-VF-WNGHEPSPGHYNFE------------- 94 (731)
Q Consensus 41 ~~~~~~sG~~Hy~r~~~~~W~~-------~l~k~Ka~G----~N~V~ty-v~-Wn~hEp~~G~ydF~------------- 94 (731)
-...+-+|+.+.+--|-+.|++ .+.++-+.| +--|++= |. |.. +.-++-+|+
T Consensus 88 vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (382)
T COG3320 88 VDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEY--YSNFTVDFDEISPTRNVGQGLA 165 (382)
T ss_pred cceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccc--cCCCccccccccccccccCccC
Confidence 4456667776665556666654 455666777 5555542 11 322 222222222
Q ss_pred cc----cc-HHHHHHHHHHcCCEE-EeccCcccccccCCCCC--CeEecc
Q 004777 95 GS----YD-LVRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGF--PVWLKY 136 (731)
Q Consensus 95 g~----~d-l~~fl~la~~~GL~v-ilr~GPYicaEw~~GG~--P~WL~~ 136 (731)
+- ++ -+++++.|.+.||.| |.||| ||-+...+|-+ +.|+.+
T Consensus 166 ~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 166 GGYGRSKWVAEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred CCcchhHHHHHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 11 22 357889999999996 89997 88877776664 666654
No 176
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.71 E-value=1.1e+02 Score=33.95 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=50.8
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcc----------cCCCCCC--C-------Ccceeecc-c--ccHHHHHH
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYV----------FWNGHEP--S-------PGHYNFEG-S--YDLVRFIK 104 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv----------~Wn~hEp--~-------~G~ydF~g-~--~dl~~fl~ 104 (731)
+|..|. ..+.-++.++++++.||.+=-+++ .|+-..- . -+.++|.. . -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566663 567788999999999987666544 2442211 1 13344432 1 28999999
Q ss_pred HHHHcCCEEEeccCcccc
Q 004777 105 TVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 105 la~~~GL~vilr~GPYic 122 (731)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888885
No 177
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.07 E-value=95 Score=35.85 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=46.1
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
..|.+.|.+.-++.++++.+.|++.|+++..-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45667788888889999999999999998876653 258899999999999886653
No 178
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.85 E-value=2.1e+02 Score=30.52 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=66.8
Q ss_pred eEEEEEEecCCC----CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCE--EEec
Q 004777 43 RILISGSIHYPR----STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLR 116 (731)
Q Consensus 43 ~~~~sG~~Hy~r----~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--vilr 116 (731)
.+.+++..|+.+ .+.+.=.++|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 467888887654 23333335677777899999999332 4444 788999999999655 4555
Q ss_pred cCcccc-------cccCCCCCCeEecccCCeeee--cCC-hhHHHHHHHHHHHHHHHHH
Q 004777 117 IGPYVC-------AEWNFGGFPVWLKYVPGISFR--TDN-GPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 117 ~GPYic-------aEw~~GG~P~WL~~~p~~~~R--~~d-~~y~~~~~~~~~~l~~~l~ 165 (731)
+-|-.. ++|..-.+|.|+.+. +. .++ ...+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444322 336666788888752 21 122 3455566666677766666
No 179
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.60 E-value=69 Score=33.52 Aligned_cols=60 Identities=13% Similarity=-0.037 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+..++.++.+|++|..+|.+...+......+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 557888999999999999874332211111112111112467888899999999999997
No 180
>PLN03059 beta-galactosidase; Provisional
Probab=31.28 E-value=88 Score=38.81 Aligned_cols=40 Identities=28% Similarity=0.627 Sum_probs=28.9
Q ss_pred EEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEE
Q 004777 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAF 518 (731)
Q Consensus 472 yllYrt~i~~~~~~~~~~~g~~~~L~i~~~~D~a~VfVNg~~vG~~~ 518 (731)
..||+++|.++..+ ....|.+.+.+-. .|||||+-+|.--
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmGKG-~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMGKG-QIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCCCe-eEEECCccccccc
Confidence 88999999875432 1145666666544 7999999999865
No 181
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=31.26 E-value=3.2e+02 Score=29.47 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=24.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCC
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP 88 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~ 88 (731)
.++.|.+..+++.+.|++.|+. |..-|..
T Consensus 111 ~~~~~~~~a~~~~~~gad~iel----N~sCP~~ 139 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALEL----NFSCPHG 139 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE----ECCCCCC
Confidence 6789999999998889999999 8877764
No 182
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=31.19 E-value=99 Score=32.95 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=41.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcc-eeec-ccccHHHHHHHHHHc-CCEEEeccCc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFE-GSYDLVRFIKTVQRV-GLYAHLRIGP 119 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~-ydF~-g~~dl~~fl~la~~~-GL~vilr~GP 119 (731)
.++.|.+..+++++.|++.|+. |..-|.... =++. ....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6789999999999999999999 766665321 0000 112566777777765 6777777654
No 183
>PRK14565 triosephosphate isomerase; Provisional
Probab=31.18 E-value=80 Score=33.34 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=35.6
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeec-ccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.+++|++|++.+-. +|-|.+. .|. .+..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~~vii----GHSERR~---~f~Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL----GHSERRS---TFHETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE----CcccccC---cCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999988 7777764 233 223333444899999999999987
No 184
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.11 E-value=1.3e+02 Score=33.77 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.|...|+++++.|++.|.-+...-.-....+. .-...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987764322221111111 124589999999999998654
No 185
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.10 E-value=1.1e+02 Score=28.44 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 114 (731)
.+++...+.++.+++.|+..|=.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 588999999999999998887662 11 355789999999999976
No 186
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=31.06 E-value=2.4e+02 Score=27.89 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHHHHHHHHHHhc
Q 004777 153 MQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVG 210 (731)
Q Consensus 153 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 210 (731)
+.+-+.+++..++ ..+.++|.+ .||.|.-.-.+++..+.|.+.+-.+-++
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq~ 150 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQR 150 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4445666666666 345688888 5999873323456788999887766554
No 187
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=30.95 E-value=8e+02 Score=27.80 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=84.9
Q ss_pred ceeEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHC-CC-CEEEEcccCCCCCCCCcceeecccccHHHHH
Q 004777 26 CSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDG-GL-DVIDTYVFWNGHEPSPGHYNFEGSYDLVRFI 103 (731)
Q Consensus 26 ~~~v~~d~~~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~-G~-N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl 103 (731)
.+.|+.-+-.|.--|-||..+.+ ..-+| +++...+++.+++.. ++ -.|+..++| +.. .|+.++.
T Consensus 10 ~~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~~ 75 (378)
T TIGR02635 10 ALKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEELA 75 (378)
T ss_pred hcEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHHH
Confidence 34555555566666667644322 11233 344555666666655 33 344554445 322 3677999
Q ss_pred HHHHHcCCEEE-eccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceE-Eec
Q 004777 104 KTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII-LSQ 181 (731)
Q Consensus 104 ~la~~~GL~vi-lr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII-~~Q 181 (731)
++++++||.|. +-|+=|-.-.+.. + .|-+.|+..++..-++.++.+..-+ .+ |.++| .|
T Consensus 76 ~~l~~~GL~v~~i~p~~f~~~~~~~-----------G-SLt~pD~~vR~~AIe~~k~~idiA~--eL----Ga~~I~iW- 136 (378)
T TIGR02635 76 RYAEELGLKIGAINPNLFQDDDYKF-----------G-SLTHPDKRIRRKAIDHLLECVDIAK--KT----GSKDISLW- 136 (378)
T ss_pred HHHHHcCCceeeeeCCccCCcccCC-----------C-CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCeEEEe-
Confidence 99999999987 7765221111111 2 3666788888888777777776666 33 44443 44
Q ss_pred cc--ccccCCcccCCcchHHHHHHHHHHHhcCCCCcce
Q 004777 182 IE--NEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPW 217 (731)
Q Consensus 182 iE--NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~ 217 (731)
+- -+|... ..+.+.-+.+.+.|++++....-++.+
T Consensus 137 ~~DG~~~~g~-~~~~~a~~rl~esL~eI~~~~~~~v~~ 173 (378)
T TIGR02635 137 LADGTNYPGQ-DDFRSRKDRLEESLAEVYEHLGADMRL 173 (378)
T ss_pred cCCcCcCCcc-cCHHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 21 122211 112222345666677777544334443
No 188
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.93 E-value=2.8e+02 Score=29.14 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC-Cccee---e-cccccHHHHHHHHHHcCCEEEeccCcccccccCCC
Q 004777 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYN---F-EGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (731)
Q Consensus 54 r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~yd---F-~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G 128 (731)
.+.++.-+...+.+++.|+.....- ...|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~---------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMC--LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG---------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEe--cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC----------
Confidence 3467777777888889999876641 1122211 11100 0 0112578899999999998764321
Q ss_pred CCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccc
Q 004777 129 GFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (731)
Q Consensus 129 G~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (731)
.+.|. ...++...+.+.+.++++++..+++ | |-+.+||-.+
T Consensus 121 -~~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 -YDVYY--------EQANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred -ccccc--------cccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 11121 1122444455556667777776632 3 4556788543
No 189
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=30.93 E-value=79 Score=33.41 Aligned_cols=49 Identities=29% Similarity=0.532 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE-eccCccccc
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCA 123 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPYica 123 (731)
.+.-.+.++++|++|+ -|+.+| +|.+ +.++.|++.|-..| |-.|||..+
T Consensus 112 ~~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 112 FDKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 4556778999999999 666655 6666 77999999999876 999999876
No 190
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=30.53 E-value=4.9e+02 Score=28.24 Aligned_cols=117 Identities=12% Similarity=0.078 Sum_probs=79.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
.-+.-+-+|+.+|.-+. .|++|- +.-.-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45678889999998887 999972 223468899999999999999985 333
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccc--cCCcccCCcchHHHHHHHHHHHhcCCC
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY--GPESKSLGAAGHAYVNWAAKMAVGLDT 213 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy--g~~~~~~~~~~~~y~~~l~~~~~~~g~ 213 (731)
. |-. ..+++ .++..+. +. ..--.|-.+-|.||- +... -...--+|+...|.++++.|.
T Consensus 111 d---------d~~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~--tasql~~~I~~vrsav~~agy 170 (305)
T COG5309 111 D---------DIH--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDL--TASQLIEYIDDVRSAVKEAGY 170 (305)
T ss_pred c---------chh--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCC--CHHHHHHHHHHHHHHHHhcCC
Confidence 2 111 12222 3333333 21 122468889999995 3311 112345799999999999999
Q ss_pred CcceeeeCC
Q 004777 214 GVPWVMCKE 222 (731)
Q Consensus 214 ~vp~~~~~~ 222 (731)
++|+.+.++
T Consensus 171 ~gpV~T~ds 179 (305)
T COG5309 171 DGPVTTVDS 179 (305)
T ss_pred CCceeeccc
Confidence 999888775
No 191
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=30.31 E-value=1.6e+02 Score=31.29 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=62.4
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcC--CEEEeccCcccc----
Q 004777 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC---- 122 (731)
Q Consensus 49 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~G--L~vilr~GPYic---- 122 (731)
+.|+...+.+.=.++|++=-++|.+.+-|-.+. |. ..+.+|++.|++.| +.|++.+=|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~f----------d~---~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFF----------DN---DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeecccc----------cH---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 334443334443455555556799999994433 22 37889999999998 566777766433
Q ss_pred ---cccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 123 ---AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 123 ---aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+++-.-++|.|+.+.=.- ...+....+++-.++..+++..+.
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~~-~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLEK-LKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455566689998762100 001223345566677777777776
No 192
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.80 E-value=6.3e+02 Score=29.02 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHCCCCEEEEccc----CCCCCCCCcceeecccccHHHHHHHHHHcCCE--EEeccCcccccccCCCCCCeEec
Q 004777 62 DLIRKAKDGGLDVIDTYVF----WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~tyv~----Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--vilr~GPYicaEw~~GG~P~WL~ 135 (731)
..++.+.+.|+|++++|+- |..-+..+ .++++|.++|+++||. .++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4778899999999999864 65544443 4899999999999884 244456764
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+.+=+.|+.-++...+.+.+-+.+-.
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334466666665555555555544
No 193
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.76 E-value=96 Score=33.07 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCcceeec-ccccHHHHHHHHHHcCCEEEeccC
Q 004777 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 65 ~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.++|++|++.|-+ +|-|.+. .|. .+..+.+=++.|.++||.+||+.|
T Consensus 82 ~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 82 EMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 4699999999998 7777665 333 334566889999999999999987
No 194
>PRK14566 triosephosphate isomerase; Provisional
Probab=29.60 E-value=94 Score=33.28 Aligned_cols=74 Identities=18% Similarity=0.101 Sum_probs=47.4
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceee-cccccHHHHHHHHHHcCCEEEec
Q 004777 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 38 ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF-~g~~dl~~fl~la~~~GL~vilr 116 (731)
++|.++.+.+=.+|+.-.-+-.=+---+++|++|++.|-. +|-|.+. .| +-+..+.+=++.|.++||.+|++
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvC 134 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII----GHSERRR---MYGETSNIVAEKFAAAQKHGLTPILC 134 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE----CcccccC---CCCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3454565544445542210000011234799999999998 7777664 23 34456777899999999999999
Q ss_pred cC
Q 004777 117 IG 118 (731)
Q Consensus 117 ~G 118 (731)
+|
T Consensus 135 vG 136 (260)
T PRK14566 135 VG 136 (260)
T ss_pred cC
Confidence 87
No 195
>PRK15492 triosephosphate isomerase; Provisional
Probab=29.38 E-value=98 Score=33.13 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=38.5
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
-.++|++|++.|-. +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 34799999999998 7777665 332 3455677788999999999999987
No 196
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.20 E-value=1.3e+02 Score=32.30 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=41.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcce--eecc-cccHHHHHHHHHHc-CCEEEeccCc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEG-SYDLVRFIKTVQRV-GLYAHLRIGP 119 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y--dF~g-~~dl~~fl~la~~~-GL~vilr~GP 119 (731)
.++.|.+..++++++|++.|+. |++-|..... .+.+ -+.+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iEl----N~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIEL----NISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 4789999999999999999999 6666653221 1211 24566778888776 6767766543
No 197
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=29.17 E-value=2e+02 Score=31.06 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccccccCCCCCCeE
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVW 133 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYicaEw~~GG~P~W 133 (731)
..|+-...-+..|++|.+.++- ...-|+---|+|.|- .-|.-+-+.++++||.|+-++
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv---------------- 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV---------------- 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe----------------
Confidence 5677788889999999999998 566777777999854 667777777889999998885
Q ss_pred ecccCCeeeecCChhHHHHHHHHHHH
Q 004777 134 LKYVPGISFRTDNGPFKVAMQGFTQK 159 (731)
Q Consensus 134 L~~~p~~~~R~~d~~y~~~~~~~~~~ 159 (731)
.|+..++.+.+|.+-
T Consensus 117 -----------m~~~~~e~~~~y~Di 131 (286)
T COG2876 117 -----------MDVRDVEAAAEYADI 131 (286)
T ss_pred -----------cCHHHHHHHHhhhhH
Confidence 477777777777543
No 198
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.17 E-value=3.4e+02 Score=28.84 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEE--EeccCcccccccCCCCCCeEecccC
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP 138 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v--ilr~GPYicaEw~~GG~P~WL~~~p 138 (731)
.+.++.+++.|+++|+.++-. |.--....-...+.++|-+.++++++.+ +.-=+||. +
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---i------------- 73 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---I------------- 73 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee---e-------------
Confidence 467899999999999996542 2111111111236778888899998863 33335553 1
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 139 GISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 139 ~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
.+=+.|+.-++...+.+.+.+..-+
T Consensus 74 --Nlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 74 --NLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --ecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334567777776666666665555
No 199
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.88 E-value=1.7e+02 Score=30.32 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=70.4
Q ss_pred HhHHHHHHHHHHHCCCCE-EEE--cccCCCCCC---CCc--ceeec-----------c--cccHHHHHHHHHHcCCEEEe
Q 004777 57 PEMWEDLIRKAKDGGLDV-IDT--YVFWNGHEP---SPG--HYNFE-----------G--SYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~-V~t--yv~Wn~hEp---~~G--~ydF~-----------g--~~dl~~fl~la~~~GL~vil 115 (731)
++.-.+.++++|+.|+.+ |+| |++|..-+. .=. -+|+. | +..+-+.|+.+.++|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 466778999999999864 555 444422111 111 23332 2 23444667778888888888
Q ss_pred ccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc-----------
Q 004777 116 RIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN----------- 184 (731)
Q Consensus 116 r~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN----------- 184 (731)
|. |. +|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 85 22 2554 345666666666665531 11 121111111
Q ss_pred cccCCcccCCcchHHHHHHHHHHHhcCCCCc
Q 004777 185 EYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (731)
Q Consensus 185 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (731)
+|-.. ......++.|+.+++.+++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22110 122467889999999999888765
No 200
>PLN02389 biotin synthase
Probab=28.83 E-value=71 Score=36.02 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCCEEEEccc--CCCCCCCCcceeecccccHHHHHHHHHHcCCEE
Q 004777 60 WEDLIRKAKDGGLDVIDTYVF--WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~--Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v 113 (731)
=++.++++|++|++.+..-+- -.++.-.-..-+|+ +..+.++.|++.||.|
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 357899999999998876211 11111111122444 5668899999999976
No 201
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=28.59 E-value=2e+02 Score=31.92 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCcceeec---ccccHHHHHHHHHHcCCEEEecc
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYNFE---GSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp------~~G~ydF~---g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.+.+..++.|+.|-...+|+...++- |.+--+ +.|.|.=. -..|+.++++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36899999999999999999998764 554332 12322211 12499999999999999999775
No 202
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.57 E-value=1.3e+02 Score=32.11 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 55 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
.|.+.=++.+++..+.|+..|+++++.|. + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45666788999999999999999887664 2 3788999999999998775
No 203
>PTZ00333 triosephosphate isomerase; Provisional
Probab=28.41 E-value=1.1e+02 Score=32.68 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 65 ~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.++|++|++.|-. +|-|.+. .| =+.+..+.+=++.|.++||.+|+++|
T Consensus 83 ~mL~d~G~~~vii----GHSERR~-~f-~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL----GHSERRQ-YF-GETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE----CcccccC-cC-CCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5799999999998 7766664 22 24456889999999999999999987
No 204
>PRK06703 flavodoxin; Provisional
Probab=28.29 E-value=3.3e+02 Score=25.85 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=60.1
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 38 ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.....++++...+-.-.+|..+.+-+..+++.-++.....+|-...-. |.. .......+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 3444555565544433445556777778787666666566666322110 110 12355667778899999888764
Q ss_pred CcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 118 GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 118 GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+-.+ .-.++..-++++++|.++|++.++
T Consensus 121 ---~~~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LKIE-----------------LAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eEEe-----------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 111234677888999999987776
No 205
>PLN02429 triosephosphate isomerase
Probab=27.95 E-value=94 Score=34.21 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=34.0
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeec-ccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.+++|++|++.|-. +|-|.+. .|. .+..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii----GHSERR~---~f~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL----GHSERRH---VIGEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe----CccccCC---CCCcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 34799999999988 7777754 243 222333334449999999999987
No 206
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.89 E-value=99 Score=32.68 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcce---eec-ccccHHHHHHHHHHcCCEEEecc
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY---NFE-GSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y---dF~-g~~dl~~fl~la~~~GL~vilr~ 117 (731)
..++.++.++++|.++|.+. . .+...+.- .+. -...+.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~---~-~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLA---G-YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEec---C-cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 46788999999999999762 1 11111100 011 01467788999999999999985
No 207
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.83 E-value=82 Score=32.72 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--ceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+.+++.++.++++|..+|.+-.-+ +...+. +..-.-...+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~--~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGK--RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCC--CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 678889999999999999863221 111100 0000112468888999999999999987
No 208
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=27.71 E-value=84 Score=32.01 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=23.5
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEE
Q 004777 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDT 77 (731)
Q Consensus 48 G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~t 77 (731)
|.=-+.|+..+|--..-+.+|+.||.++-.
T Consensus 99 GadgfykvDhDyvl~~A~~AKe~Gck~fvL 128 (238)
T KOG4039|consen 99 GADGFYKVDHDYVLQLAQAAKEKGCKTFVL 128 (238)
T ss_pred ccCceEeechHHHHHHHHHHHhCCCeEEEE
Confidence 333345789999999999999999988754
No 209
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=27.58 E-value=47 Score=34.10 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=53.1
Q ss_pred CEEeEEEEEEecC-CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC--------CCCc----ceeecccccHHHHHHHH
Q 004777 40 GQRRILISGSIHY-PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE--------PSPG----HYNFEGSYDLVRFIKTV 106 (731)
Q Consensus 40 G~~~~~~sG~~Hy-~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE--------p~~G----~ydF~g~~dl~~fl~la 106 (731)
++-+.+.-|+-+. -|+|.+.|.+.++++++.| +.+.++|.-.| -.++ ..++.|..+|.+++.+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali 181 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALI 181 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHH
Confidence 3344444455454 4479999999999999998 55667887766 1223 68899999999999999
Q ss_pred HHcCCEEEeccCc
Q 004777 107 QRVGLYAHLRIGP 119 (731)
Q Consensus 107 ~~~GL~vilr~GP 119 (731)
+...+.|-.-.||
T Consensus 182 ~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 182 SRADLVIGNDTGP 194 (247)
T ss_dssp HTSSEEEEESSHH
T ss_pred hcCCEEEecCChH
Confidence 9999999888887
No 210
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=27.33 E-value=93 Score=34.27 Aligned_cols=116 Identities=22% Similarity=0.396 Sum_probs=71.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEE-EeccCcccccccCCCCCCeEec
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v-ilr~GPYicaEw~~GG~P~WL~ 135 (731)
...|+..-.-.+++||-+|.+|-+|+..+..= |++.||.-.+.+--.. |+-. .||-=..|=
T Consensus 132 nPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~si~iLh---aCAhNPTGm------ 193 (410)
T KOG1412|consen 132 NPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEGSIIILH---ACAHNPTGM------ 193 (410)
T ss_pred CCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCCcEEeee---ccccCCCCC------
Confidence 44699999999999999999999999876544 7888998888765553 2332 366544432
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCce--EEecccccccCCcccCCcchHHHHHHHHHHHhcCCC
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI--ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDT 213 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI--I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 213 (731)
|| .++=+..|++.|++..++ |. |+.| |.- .| |.+--.|..+.+.+.|
T Consensus 194 ----------DP-----T~EQW~qia~vik~k~lf-----~fFDiAYQ-----GfA---SG--D~~~DawAiR~fV~~g- 242 (410)
T KOG1412|consen 194 ----------DP-----TREQWKQIADVIKSKNLF-----PFFDIAYQ-----GFA---SG--DLDADAWAIRYFVEQG- 242 (410)
T ss_pred ----------CC-----CHHHHHHHHHHHHhcCce-----eeeehhhc-----ccc---cC--CccccHHHHHHHHhcC-
Confidence 11 223344566666654332 22 3333 221 23 2233457777777776
Q ss_pred CcceeeeCC
Q 004777 214 GVPWVMCKE 222 (731)
Q Consensus 214 ~vp~~~~~~ 222 (731)
.++|.|+.
T Consensus 243 -~e~fv~QS 250 (410)
T KOG1412|consen 243 -FELFVCQS 250 (410)
T ss_pred -CeEEEEhh
Confidence 46787774
No 211
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=27.24 E-value=4.4e+02 Score=27.11 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc-ceeec-ccccHHHHHHHHHHcCCEEEecc------CcccccccCCCCCCe
Q 004777 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG-HYNFE-GSYDLVRFIKTVQRVGLYAHLRI------GPYVCAEWNFGGFPV 132 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G-~ydF~-g~~dl~~fl~la~~~GL~vilr~------GPYicaEw~~GG~P~ 132 (731)
++.++.|+++|+|++.+ | .-.|+ |..-|.+.++..+++|+..+--- .||.--|.+ |...
T Consensus 67 ~~~~~~L~~~G~d~~tl-----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~--g~kV 133 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVN--GIKV 133 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEEC--CEEE
Q ss_pred EecccCCeeeec----------CChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHHHH
Q 004777 133 WLKYVPGISFRT----------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVN 202 (731)
Q Consensus 133 WL~~~p~~~~R~----------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~ 202 (731)
=+...-...... ....-.+.++++++++-+. + ++ -|++.+...||.. .-..+.+
T Consensus 134 g~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~ 197 (239)
T cd07381 134 AFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQR 197 (239)
T ss_pred EEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHH
Q ss_pred HHHHHHhcCCCCc
Q 004777 203 WAAKMAVGLDTGV 215 (731)
Q Consensus 203 ~l~~~~~~~g~~v 215 (731)
.+++.+...|+++
T Consensus 198 ~la~~l~~~G~D~ 210 (239)
T cd07381 198 ELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHCCCCE
No 212
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=27.08 E-value=2.7e+02 Score=31.40 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=61.4
Q ss_pred EECCEEeEEEE-EEecCCC-----CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHH--
Q 004777 37 LINGQRRILIS-GSIHYPR-----STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQR-- 108 (731)
Q Consensus 37 ~ldG~~~~~~s-G~~Hy~r-----~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~-- 108 (731)
-.+|-..-++| |+|-++- +..+.-.+.++.+-+.|+|.|+| .|.+|--+- +.||.-|=+
T Consensus 7 ~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidT--A~~Yh~g~s-----------E~~lgkaL~~~ 73 (391)
T COG1453 7 PKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDT--AWPYHGGES-----------EEFLGKALKDG 73 (391)
T ss_pred CCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEee--cccccCCCc-----------hHHHHHHhhhc
Confidence 34555555554 7777755 37778888999999999999999 677765432 244444433
Q ss_pred cCCEEEeccCcccccccCCCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 004777 109 VGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (731)
Q Consensus 109 ~GL~vilr~GPYicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (731)
+--.|+|.. .+|.|..++. +.++++|++=++++.
T Consensus 74 ~Rekv~LaT-----------Klp~~~~~~~------------edm~r~fneqLekl~ 107 (391)
T COG1453 74 YREKVKLAT-----------KLPSWPVKDR------------EDMERIFNEQLEKLG 107 (391)
T ss_pred ccceEEEEe-----------ecCCccccCH------------HHHHHHHHHHHHHhC
Confidence 344566664 3788876543 567788877666665
No 213
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.86 E-value=96 Score=32.73 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=33.3
Q ss_pred EECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEE
Q 004777 37 LINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDT 77 (731)
Q Consensus 37 ~ldG~~~~~~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~t 77 (731)
.+.|+++..++|.+|+... ...+-+--++-||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 5789999999999997665 4444477899999999987643
No 214
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.17 E-value=89 Score=33.05 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=61.9
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEccc-CCCC---CCCCcceee-cccccHHHHHHHHHHcCCEEEeccCcccccccCCC
Q 004777 54 RSTPEMWEDLIRKAKDGGLDVIDTYVF-WNGH---EPSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (731)
Q Consensus 54 r~~~~~W~~~l~k~Ka~G~N~V~tyv~-Wn~h---Ep~~G~ydF-~g~~dl~~fl~la~~~GL~vilr~GPYicaEw~~G 128 (731)
+.+++.|++..+..|+.|+..+.|..- -+.. +...-.|-- |+...=-.||+.+++.|+-|||-.|-
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~--------- 122 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM--------- 122 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---------
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC---------
Confidence 468999999999999999999999432 1111 111111211 34444446899999999999999761
Q ss_pred CCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccccCCcccCCcchHHHHHHHHHHH
Q 004777 129 GFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMA 208 (731)
Q Consensus 129 G~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 208 (731)
..++++++-++.+ + ...+.+|++.|-=-.|-.. .....-.-|+.|++.+
T Consensus 123 -------------------stl~EI~~Av~~~----~-----~~~~~~l~llHC~s~YP~~---~e~~NL~~i~~L~~~f 171 (241)
T PF03102_consen 123 -------------------STLEEIERAVEVL----R-----EAGNEDLVLLHCVSSYPTP---PEDVNLRVIPTLKERF 171 (241)
T ss_dssp ---------------------HHHHHHHHHHH----H-----HHCT--EEEEEE-SSSS-----GGG--TTHHHHHHHHS
T ss_pred -------------------CCHHHHHHHHHHH----H-----hcCCCCEEEEecCCCCCCC---hHHcChHHHHHHHHhc
Confidence 2345555555554 2 1234588888865566542 1123344677777765
No 215
>PLN02231 alanine transaminase
Probab=26.07 E-value=1.6e+02 Score=34.75 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=46.7
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
+....+..++.++..+..|.++--.++. |-|.|.=-.++=+ .+.+++++|+++|+++|.-
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 4567777777777777777766545555 8888887777766 8999999999999998865
No 216
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.91 E-value=1.2e+02 Score=30.43 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEE-----EcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 63 LIRKAKDGGLDVID-----TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~-----tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
..+.+++.|+.+|= |-|+|+--+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35689999999986 568899999999 8999999999999998765
No 217
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=25.90 E-value=2e+02 Score=33.11 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=46.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
+....+..++.++..++.|.++=-+|+. |-|.|.=-.|+=+ .+.+++++|++++++||.-
T Consensus 171 ~~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 171 FQITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLISD 230 (468)
T ss_pred CcCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEEE
Confidence 4556677777777777777776556777 8888887777766 8999999999999998854
No 218
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.69 E-value=1.2e+02 Score=36.28 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=45.1
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEe
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 115 (731)
+=|.|.|.+.-+..++++++.|++.|+++...|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 55677788888889999999999999998766653 3788999999999998644
No 219
>PRK14567 triosephosphate isomerase; Provisional
Probab=25.69 E-value=1.2e+02 Score=32.30 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 65 ~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
.++|++|++.|-. .|-|.+. .|. +.+..+.+=++.|.++||.+|+++|
T Consensus 79 ~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4799999999998 7777664 222 3445677888999999999999987
No 220
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.63 E-value=1.3e+02 Score=23.71 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEE
Q 004777 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (731)
Q Consensus 57 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v 113 (731)
|..-.+.+.-+.+.|+|.+.++. +..++.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999988875 3333334555666533 4889999999999765
No 221
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.35 E-value=1.5e+02 Score=31.66 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=56.3
Q ss_pred eEEEcCCcEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeec--ccccHHHHHH
Q 004777 28 TVTYDRKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIK 104 (731)
Q Consensus 28 ~v~~d~~~f~ldG~~~~~~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~--g~~dl~~fl~ 104 (731)
.|.+. .+.+.+..+.++.| +-.+ ..+.-.+.-+.+|+.|....+.|+|=+...| |.|. |..-|..+-+
T Consensus 13 ~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 34542 34555444666777 3223 5666778888999999998888777644433 4455 4567888899
Q ss_pred HHHHcCCEEEecc
Q 004777 105 TVQRVGLYAHLRI 117 (731)
Q Consensus 105 la~~~GL~vilr~ 117 (731)
.|++.||.++-.|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 9999999998876
No 222
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.15 E-value=63 Score=35.94 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=45.5
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 49 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+-++ |.+...=.-..+.+|++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|++.||-+++.+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3344 55443322246789999999999999999553310 001123479999999999999999874
No 223
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=25.14 E-value=5.5e+02 Score=29.24 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=48.0
Q ss_pred EeEEEEEEecCCCCCHhHH----HHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 42 RRILISGSIHYPRSTPEMW----EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 42 ~~~~~sG~~Hy~r~~~~~W----~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
...+++|.+.-...|+... .+.++++++.++.+ |+.+ |.-|+.. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v---~~I~-------GNHD~~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQL---VVLA-------GNHDSVA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcE---EEEc-------CCCCChh--hhhhHHHHHHHCCcEEEecc
Confidence 3567888886544444433 34566778777653 3333 3333322 24556777889999988554
Q ss_pred C-----cccccccCCCCCCeEecccCC
Q 004777 118 G-----PYVCAEWNFGGFPVWLKYVPG 139 (731)
Q Consensus 118 G-----PYicaEw~~GG~P~WL~~~p~ 139 (731)
. ..|.-+-..|...+|+.-.|-
T Consensus 109 ~~~~~~~~v~l~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIILPRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEEecCCCCeeeEEEECCC
Confidence 2 112223345556667765553
No 224
>PLN02561 triosephosphate isomerase
Probab=24.54 E-value=1.4e+02 Score=31.95 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=38.6
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
..++|++|++.|-. +|-|.+. .| =+-+..+.+=++.|.++||.+|+++|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR~-~f-~Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL----GHSERRA-LL-GESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC-cc-CCChHHHHHHHHHHHHCcCEEEEEcC
Confidence 45799999999998 7777765 22 13456778888899999999999987
No 225
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.50 E-value=55 Score=34.97 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 63 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
.-+++|+.|-++|-.-|.|...||+-.+-. ..-+++|...|..+||..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk---~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQK---LAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHH---HHHHHHHHHHhhhcCCceeEee
Confidence 456899999999999999999999322222 2368999999999999999997
No 226
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.46 E-value=56 Score=31.28 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHcCCEEEeccCcccccccC-CCCCCeEecccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 004777 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWN-FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (731)
Q Consensus 97 ~dl~~fl~la~~~GL~vilr~GPYicaEw~-~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (731)
.||..||+.|++.|+.|++=+-| |++.|- +-|+| .+.-++++++|-.++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 49999999999999998766644 555552 11110 24456778888777773
No 227
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.25 E-value=58 Score=36.10 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCEEE-----EcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEE
Q 004777 60 WEDLIRKAKDGGLDVID-----TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~-----tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v 113 (731)
-++.|+++|++|++.+. ++..--++.-.|++...+ +..+.++.|+++|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 35668999999997654 222211233335444333 4558899999999975
No 228
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=24.02 E-value=76 Score=34.86 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=35.8
Q ss_pred EEEEEEec------CCCCCHhHHHHHHHHHHHC-CCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEE
Q 004777 44 ILISGSIH------YPRSTPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (731)
Q Consensus 44 ~~~sG~~H------y~r~~~~~W~~~l~k~Ka~-G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v 113 (731)
++.||. | +.+++.+-+++-.++---+ |+|-.+- ||.+-++.. ....++|++|++.|-|.
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~ 169 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYF 169 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceE
Confidence 456777 8 3445666666666665543 8888887 466655544 37789999999999988
No 229
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=23.77 E-value=86 Score=35.37 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=52.3
Q ss_pred EecCCC-CCHhHHHHHHHHHHHC-CCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 49 SIHYPR-STPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 49 ~~Hy~r-~~~~~W~~~l~k~Ka~-G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
|+.|+- .|.+.|+-+|.-+.++ -=||+..-|- |=|.|--++|+-. .|.+++++|+++|+.||..
T Consensus 173 EVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 173 EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred eeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 343333 5888899999999886 6788888554 7888888999887 9999999999999998864
No 230
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.76 E-value=25 Score=35.37 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--ceeecccccHHHHHHHHHHcCCEEEec
Q 004777 43 RILISGSIHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 43 ~~~~sG~~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
..+-+|--.|.|+ .|-.-+ +-+.++|++.+-.- .--+.| -|||-...+|.+|.++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445666667774 333333 34677898876441 112344 599988889999999999999987654
No 231
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.68 E-value=2.1e+02 Score=31.32 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceee-ccc---ccHHHHHHHHHHcCC-EEEec
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF-EGS---YDLVRFIKTVQRVGL-YAHLR 116 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF-~g~---~dl~~fl~la~~~GL-~vilr 116 (731)
...+.+++++++|++.|.+ +++-..|..|+- .+. ..+.+.|+.|++.|+ .|-+.
T Consensus 102 ll~~~~~~L~~aGl~~v~I----SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 102 RLARFAAELADAGLKRLNI----SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred HHHHHHHHHHHcCCCeEEE----EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 3456788999999999988 666666655553 222 256677777788887 45444
No 232
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=23.49 E-value=74 Score=39.53 Aligned_cols=76 Identities=24% Similarity=0.448 Sum_probs=50.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE------------cccCCCCCC------CCcceeecccccHHHHHHHHHH-cCCEEEec
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDT------------YVFWNGHEP------SPGHYNFEGSYDLVRFIKTVQR-VGLYAHLR 116 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~t------------yv~Wn~hEp------~~G~ydF~g~~dl~~fl~la~~-~GL~vilr 116 (731)
|-+.|+.+|+++|+.|.|+|.. |-.-+.||- .-++|.|+ |+..+++-+++ -++.-|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6689999999999999999973 333333332 33678898 99999998864 57665533
Q ss_pred cCcccccccCCC-CCCeEecccCCe
Q 004777 117 IGPYVCAEWNFG-GFPVWLKYVPGI 140 (731)
Q Consensus 117 ~GPYicaEw~~G-G~P~WL~~~p~~ 140 (731)
+ -|+.- .=-.||+++|+.
T Consensus 217 v------V~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V------VYNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h------hhhccccCCchhHhCchh
Confidence 2 12221 124577766653
No 233
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.48 E-value=1.3e+02 Score=30.95 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=41.8
Q ss_pred ecCCCCCHhHH--HHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 50 IHYPRSTPEMW--EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 50 ~Hy~r~~~~~W--~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
.|+....+... +.-++++|++|++.|-+ .+-|.. -.|+ .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57755432211 23488999999999987 443433 2343 5889999999999999997653
No 234
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.36 E-value=2.3e+02 Score=34.56 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=46.6
Q ss_pred CHhHHHHHHHHHHHCCCCE--EEEcccCCCCCC-CCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccc
Q 004777 56 TPEMWEDLIRKAKDGGLDV--IDTYVFWNGHEP-SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~--V~tyv~Wn~hEp-~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYic 122 (731)
+.+.-.+.++++|+.|+-+ |..-.+|- .. .-+.|.|+-. -|..++++..++.|++|++.+=|||.
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 4555678889999999864 33334453 22 2245666533 28899999999999999999988885
No 235
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=23.25 E-value=2.2e+02 Score=36.16 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=55.3
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc--ccHHHHHHHHHHcCCEEEeccCcccccc
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPYicaE 124 (731)
+|..|+ +.+.-++.++++++.|+-+=.+++-|.+..- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 455553 4667788999999999988777766666542 335666533 4889999999999999988777888764
No 236
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.24 E-value=8.5e+02 Score=26.85 Aligned_cols=128 Identities=22% Similarity=0.330 Sum_probs=76.9
Q ss_pred CHhHHHHHHHHHHHCC-CCEEEEcccCCCCCCC-Ccceeec-ccccHHHHHHHHHHc-CCEEEeccCcccccccCCCCCC
Q 004777 56 TPEMWEDLIRKAKDGG-LDVIDTYVFWNGHEPS-PGHYNFE-GSYDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFP 131 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G-~N~V~tyv~Wn~hEp~-~G~ydF~-g~~dl~~fl~la~~~-GL~vilr~GPYicaEw~~GG~P 131 (731)
..+.|.|.+.++.+.+ .+.|+. |.--|. ||-=++. ...-++++++.+++. .+-|++...|.+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~iel----NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~---------- 172 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIEL----NISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNI---------- 172 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----EccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCH----------
Confidence 4788999999999999 899999 887774 6633332 222567777777653 455666665521
Q ss_pred eEecccCCeeeecCChhHHHHHHHHHHHHHHHHHhcc---ccccC---CCc-eEEec----ccccccCCcccCCcc-hHH
Q 004777 132 VWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEK---LFASQ---GGP-IILSQ----IENEYGPESKSLGAA-GHA 199 (731)
Q Consensus 132 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~---~~~~~---gGp-II~~Q----iENEyg~~~~~~~~~-~~~ 199 (731)
.. +..++..+.+++ +-..| .++ |..-+ ..||.|.+. |+. -+.
T Consensus 173 ---------------~d--------i~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~ 226 (310)
T COG0167 173 ---------------TD--------IDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPI 226 (310)
T ss_pred ---------------HH--------HHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHH
Confidence 11 122222222221 11111 122 22222 568998864 322 233
Q ss_pred HHHHHHHHHhcCCCCcceeeeCCC
Q 004777 200 YVNWAAKMAVGLDTGVPWVMCKED 223 (731)
Q Consensus 200 y~~~l~~~~~~~g~~vp~~~~~~~ 223 (731)
=++++++++++.+.++|++-+.+.
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCc
Confidence 478899999998889999987763
No 237
>PTZ00377 alanine aminotransferase; Provisional
Probab=23.21 E-value=2.2e+02 Score=32.88 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=44.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
+.+.++..++.+...++.|.++--.|+. |-|.|.=-.|+=+ .+++++++|+++|++||.-
T Consensus 198 ~~~d~~~l~~~l~~~~~~~~~~k~l~l~-~P~NPTG~~~s~e---~~~~i~~~a~~~~~~iI~D 257 (481)
T PTZ00377 198 WSLDQEELEEAYEQAVRNGITPRALVVI-NPGNPTGQVLTRD---VMEEIIKFCYEKGIVLMAD 257 (481)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEE-CCCCCCCcCCCHH---HHHHHHHHHHHCCCEEEEe
Confidence 4567777777776655555555445666 7788877777666 7999999999999998865
No 238
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.06 E-value=55 Score=35.80 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=40.3
Q ss_pred eEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE-ecc
Q 004777 43 RILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRI 117 (731)
Q Consensus 43 ~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~ 117 (731)
.++++-+..--+. |+.|++.|..+-++|+|.|.- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 3445444444444 478999999999999999985 677554 77899999999999876 664
No 239
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.99 E-value=2.2e+02 Score=32.91 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=51.8
Q ss_pred cCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCCCC---C------------------
Q 004777 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE---P------------------ 86 (731)
Q Consensus 32 d~~~f~ldG~~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hE---p------------------ 86 (731)
..|+|+||=-| |++ +.+.-++.|+.|-...+|+...++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566665333 443 7899999999999999999999873 53211 0
Q ss_pred --------------CCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 87 --------------SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 87 --------------~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
..|.|. ..|+.++++.|++.|+.||..+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3599999999999999999765
No 240
>PRK07094 biotin synthase; Provisional
Probab=22.93 E-value=71 Score=34.72 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCCEEEEccc---CCCCCCCCcceeecccccHHHHHHHHHHcCCEE
Q 004777 61 EDLIRKAKDGGLDVIDTYVF---WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~tyv~---Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v 113 (731)
++.+++||++|++.|...+- -..++......+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 46788899999998876332 11111111134444 6778889999999864
No 241
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=22.80 E-value=1.6e+02 Score=36.28 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=47.6
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCC--EEEEcccCCCCCCCCcceeeccc----ccHHHHHHHHHHcCCEEEeccCcc
Q 004777 50 IHYPRS---TPEMWEDLIRKAKDGGLD--VIDTYVFWNGHEPSPGHYNFEGS----YDLVRFIKTVQRVGLYAHLRIGPY 120 (731)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~Ka~G~N--~V~tyv~Wn~hEp~~G~ydF~g~----~dl~~fl~la~~~GL~vilr~GPY 120 (731)
+|..|+ .-+.-++..+.+++||+. ++-+-+.|. ++.=||+=+ .++..|++-.++.|+++++-+=|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 444553 455668899999999998 555544443 222234311 368899999999999999988887
Q ss_pred cc
Q 004777 121 VC 122 (731)
Q Consensus 121 ic 122 (731)
|.
T Consensus 375 is 376 (805)
T KOG1065|consen 375 IS 376 (805)
T ss_pred cc
Confidence 75
No 242
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.65 E-value=1.7e+02 Score=29.48 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=38.1
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 48 G~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
..+|-. .+..| .+++++++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 57 ~d~k~~--d~~~~--~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 57 ADLKTM--DAGEY--EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEeec--cchHH--HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 345544 33333 68899999999998854431 136789999999999999876
No 243
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=22.57 E-value=2.5e+02 Score=32.24 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
+....+..++.++.+++-|.++=-.++. |-|.|.=-.|+=+ .+.+++++|+++++++|.-
T Consensus 180 f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 180 FQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 4577888899999888888886445554 6788876666655 8999999999999999865
No 244
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.18 E-value=1.6e+02 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=35.5
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
=++.++++++.|+++|.. .-|.... ....+.+.+++.|+.+++.
T Consensus 18 ~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G 61 (175)
T PF02811_consen 18 PEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPG 61 (175)
T ss_dssp HHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEe
Confidence 457789999999999998 6663333 4778899999999998875
No 245
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.12 E-value=2.7e+02 Score=25.76 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=42.1
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCC---CCCCCcceeecccccHHHHHHHHHHc-CCEEEec
Q 004777 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNG---HEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHLR 116 (731)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~---hEp~~G~ydF~g~~dl~~fl~la~~~-GL~vilr 116 (731)
+|=-=-|.+.+..++++||.-|+++|..-.-=-. |-+=| +++++.++.++. |+.||.-
T Consensus 44 ~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP---------~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 44 FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP---------HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC---------CHHHHHHHHHHHhCCCEeee
Confidence 3333346888999999999999999987422111 11445 688999999988 9998864
No 246
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=22.12 E-value=79 Score=32.63 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCCCC-ceEEeeC----CCceEEEEEcCeeeeeee
Q 004777 632 PTGNE-PLALDLR----SMGKGQVWINGQSIGRYW 661 (731)
Q Consensus 632 p~~~d-ptfLd~~----g~gKG~vwVNG~nLGRYW 661 (731)
|+|.. +|||.|- --.+|.+||||++|.|.=
T Consensus 36 pSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 36 PSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred CCCCCHHHHHHHHHhhhcCCCceEEECCeeccccc
Confidence 55543 6777642 347999999999999864
No 247
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.11 E-value=5.6e+02 Score=28.63 Aligned_cols=122 Identities=19% Similarity=0.369 Sum_probs=70.6
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCcce-eecc--cccHHHHHHH---HHHcCCEEEeccCcccccccCCCCCCeEec
Q 004777 62 DLIRKAKDGGLDVIDTYVFWNGHEPSPGHY-NFEG--SYDLVRFIKT---VQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 62 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y-dF~g--~~dl~~fl~l---a~~~GL~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
+.++.+.++|++-|-. +.|.--|-.= -..| ..|+++.+++ +.+.|+.|++-| .||
T Consensus 205 ~lv~eLeeAGLdRiNl----Sv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaP--------------v~l- 265 (414)
T COG2100 205 KLVDELEEAGLDRINL----SVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAP--------------VWL- 265 (414)
T ss_pred HHHHHHHHhCCceEEe----ecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEee--------------eec-
Confidence 4567788888888877 5555444110 0112 2345555555 457999999874 676
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccccc--cCCcc-cCCcchHHHHHHHHHHHhcCC
Q 004777 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY--GPESK-SLGAAGHAYVNWAAKMAVGLD 212 (731)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy--g~~~~-~~~~~~~~y~~~l~~~~~~~g 212 (731)
||+ ||.. +..+-.|..++. ++++-|.+++|--=+| |--.- .---.-++|-+||+++-++.|
T Consensus 266 --PG~----ND~E-~~~iIe~A~~iG---------aGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg 329 (414)
T COG2100 266 --PGV----NDDE-MPKIIEWAREIG---------AGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETG 329 (414)
T ss_pred --CCc----ChHH-HHHHHHHHHHhC---------CCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhC
Confidence 443 3332 344455555542 4556678888954444 42110 000034789999999998877
Q ss_pred CCcceee
Q 004777 213 TGVPWVM 219 (731)
Q Consensus 213 ~~vp~~~ 219 (731)
+. |++.
T Consensus 330 ~k-pLil 335 (414)
T COG2100 330 VK-PLIL 335 (414)
T ss_pred CC-cccc
Confidence 64 3543
No 248
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=22.07 E-value=69 Score=33.89 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 64 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
..++|++|++.|-. +|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII----GHSERRQ-YFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE----SCHHHHH-HST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe----ccccccC-ccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 45899999999988 7766552 111 4566899999999999999999987
No 249
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.01 E-value=1.4e+02 Score=31.51 Aligned_cols=88 Identities=22% Similarity=0.193 Sum_probs=61.2
Q ss_pred eEEEEEEecCCC-CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-----------CCcceeecccccHHHHHHHHHHcC
Q 004777 43 RILISGSIHYPR-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----------SPGHYNFEGSYDLVRFIKTVQRVG 110 (731)
Q Consensus 43 ~~~~sG~~Hy~r-~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-----------~~G~ydF~g~~dl~~fl~la~~~G 110 (731)
+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|.+++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 344444444444 699999999999998888776442 22221 245578889899999999999999
Q ss_pred CEEEeccCcccccccCCCCCCeEec
Q 004777 111 LYAHLRIGPYVCAEWNFGGFPVWLK 135 (731)
Q Consensus 111 L~vilr~GPYicaEw~~GG~P~WL~ 135 (731)
+.|-...||.--| ..=|.|....
T Consensus 201 l~I~~Dsg~~HlA--~a~~~p~i~l 223 (279)
T cd03789 201 LVVTNDSGPMHLA--AALGTPTVAL 223 (279)
T ss_pred EEEeeCCHHHHHH--HHcCCCEEEE
Confidence 9999998885444 1234455543
No 250
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=21.89 E-value=1.7e+02 Score=32.09 Aligned_cols=64 Identities=11% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-------------CCcceeecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-------------SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-------------~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
-|+|.+.|.+.++.+++.|+..| +++.-.|. .+...|..|..+|.++..+.+...++|=--.||
T Consensus 197 K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSGp 273 (352)
T PRK10422 197 KCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSAP 273 (352)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 45799999999999988887654 44443321 123567788888888888888888887777666
No 251
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.87 E-value=1.8e+02 Score=30.78 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.4
Q ss_pred EEEEecCCCCCH--hHHHHHHHHHHHCCCCEEEEc
Q 004777 46 ISGSIHYPRSTP--EMWEDLIRKAKDGGLDVIDTY 78 (731)
Q Consensus 46 ~sG~~Hy~r~~~--~~W~~~l~k~Ka~G~N~V~ty 78 (731)
+=+++|.|..+| +.|.+.+++|++.|.+.|..-
T Consensus 138 vI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia 172 (253)
T PRK02412 138 VVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIA 172 (253)
T ss_pred EEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEE
Confidence 345999998876 567789999999999999883
No 252
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.73 E-value=95 Score=32.79 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC---CcceeecccccHHHHHHHHHHcCCEEEeccC
Q 004777 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (731)
Q Consensus 58 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~---~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 118 (731)
+.+++.++.++++|+++|.+ |..+.+. +..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 55788899999999998765 3333321 111110 114677888888899999999974
No 253
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=21.69 E-value=1.1e+02 Score=33.73 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCE--EE-ecc
Q 004777 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AH-LRI 117 (731)
Q Consensus 59 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--vi-lr~ 117 (731)
.|++.+.+++..|+ +|+..-+=-..|..|+.| +|+.+.+++|+..||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 678877788899999887 5899999999999986 33 665
No 254
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.43 E-value=3.1e+02 Score=30.03 Aligned_cols=68 Identities=22% Similarity=0.459 Sum_probs=49.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc-CCC-CCCCCcc-----eeeccc--ccHHHHHHHHHHcCCEEEeccCccccc
Q 004777 56 TPEMWEDLIRKAKDGGLDVIDTYVF-WNG-HEPSPGH-----YNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G~N~V~tyv~-Wn~-hEp~~G~-----ydF~g~--~dl~~fl~la~~~GL~vilr~GPYica 123 (731)
+.+.-++.++++++.||-+=.+++- |.. ++..-|. |+|+-. -|..++++..++.|++|++-+=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 7777899999999999877666654 632 2332232 344432 389999999999999999988777753
No 255
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.35 E-value=2e+02 Score=30.72 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=48.9
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHH-HcCCEEEeccC
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ-RVGLYAHLRIG 118 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~-~~GL~vilr~G 118 (731)
.+...+.=.+..+.+-++|++.|+.-.+-...+...|..-|.....+.++.++.+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 4567888889999999999999999888776556667777775455566666553 45666778876
No 256
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.30 E-value=5.9e+02 Score=29.24 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=59.7
Q ss_pred CcEEECCEEeEEEEEEecCCCC---CHhHHHHHHHHHHHCCCCE--E--EE-cccCCCCCCCCcceeecccccHHHHHHH
Q 004777 34 KAILINGQRRILISGSIHYPRS---TPEMWEDLIRKAKDGGLDV--I--DT-YVFWNGHEPSPGHYNFEGSYDLVRFIKT 105 (731)
Q Consensus 34 ~~f~ldG~~~~~~sG~~Hy~r~---~~~~W~~~l~k~Ka~G~N~--V--~t-yv~Wn~hEp~~G~ydF~g~~dl~~fl~l 105 (731)
+...+.+.-|+++.+.-+-++. .++.=+.-.+.+++.|++. | .. |. -|+-.|.+..++++ ..-+.+-|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 4567778999999888877654 3444555567788888762 3 22 43 78877888777776 4467788999
Q ss_pred HHHcCCE-EEeccC
Q 004777 106 VQRVGLY-AHLRIG 118 (731)
Q Consensus 106 a~~~GL~-vilr~G 118 (731)
|++.|.. |++-||
T Consensus 227 A~~LGa~~VV~HPG 240 (413)
T PTZ00372 227 CEQLGIKLYNFHPG 240 (413)
T ss_pred HHHcCCCEEEECCC
Confidence 9999997 567787
No 257
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.28 E-value=1e+02 Score=34.47 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=39.2
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc----ccHHHHHHHHHHcCCE
Q 004777 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS----YDLVRFIKTVQRVGLY 112 (731)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~----~dl~~fl~la~~~GL~ 112 (731)
++=+.++..+.+ +.|+.||++|+|.|+. ....-.+-..++-|+ .+..+.++.|++.|+.
T Consensus 96 it~e~np~~l~~----e~l~~Lk~~Gv~risi----GvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 96 ITMEANPGTVEA----DRFVGYQRAGVNRISI----GVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred EEEEeCcCcCCH----HHHHHHHHcCCCEEEe----ccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 344444444444 6788999999999999 444444433333222 3777889999999985
No 258
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.24 E-value=1.1e+02 Score=33.99 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=40.5
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeeccc----ccHHHHHHHHHHcCCE
Q 004777 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS----YDLVRFIKTVQRVGLY 112 (731)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~----~dl~~fl~la~~~GL~ 112 (731)
++-+.++..+++ +.|+.||++|+|.|+. ....-.+...+.-|+ .++.+.++.++++|+.
T Consensus 89 itie~np~~lt~----e~l~~l~~~Gv~risi----GvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 89 ITTEANPELITA----EWCKGLKGAGINRLSL----GVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred EEEEeCCCCCCH----HHHHHHHHcCCCEEEE----ecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 455566665654 5688999999999999 444344433333332 3788889999999985
No 259
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=20.92 E-value=3.5e+02 Score=29.72 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=42.4
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-C-CCcceeecccccHHHHHHHHHHc-CCEEEeccCc
Q 004777 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-P-SPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (731)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-p-~~G~ydF~g~~dl~~fl~la~~~-GL~vilr~GP 119 (731)
+..++ .-..++.|.+..++++++|++.|+. |..- | .++.+..+-...+.++++.+++. .+-|++...|
T Consensus 102 vi~si--~g~~~~~~~~~a~~~~~~gad~iEl----N~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p 172 (325)
T cd04739 102 VIASL--NGVSAGGWVDYARQIEEAGADALEL----NIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP 172 (325)
T ss_pred EEEEe--CCCCHHHHHHHHHHHHhcCCCEEEE----eCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 44455 2346799999999999999999999 5532 2 23444332112355666666653 5555555544
No 260
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=20.74 E-value=1e+02 Score=37.54 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCCEEEE--------cc-cCCCCCCCCcceee---cc----------cccHHHHHHHHHHcCCEEEecc
Q 004777 61 EDLIRKAKDGGLDVIDT--------YV-FWNGHEPSPGHYNF---EG----------SYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 61 ~~~l~k~Ka~G~N~V~t--------yv-~Wn~hEp~~G~ydF---~g----------~~dl~~fl~la~~~GL~vilr~ 117 (731)
+++|..+|.+|+|+|+. |+ .|.++- .+| ++ ..++.+++|.|++.||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~-----~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQV-----TNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcce-----eEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 34588899999999995 22 354432 122 00 2389999999999999999986
No 261
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.52 E-value=2.2e+02 Score=30.61 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=40.2
Q ss_pred CHhHHHHHHHHHHHCC-CCEEEEcccCCCCCCCC--cceeecc-cccHHHHHHHHHHc-CCEEEeccC
Q 004777 56 TPEMWEDLIRKAKDGG-LDVIDTYVFWNGHEPSP--GHYNFEG-SYDLVRFIKTVQRV-GLYAHLRIG 118 (731)
Q Consensus 56 ~~~~W~~~l~k~Ka~G-~N~V~tyv~Wn~hEp~~--G~ydF~g-~~dl~~fl~la~~~-GL~vilr~G 118 (731)
.++.|.+..++++++| ++.|+. |.+-|.. |-+.+.. .+-+.++++.+++. ++-|+++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iEl----N~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIEL----NISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEE----ECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899999999999999 999999 6655542 2122221 23566777777765 566666654
No 262
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.51 E-value=1.6e+02 Score=32.91 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=41.6
Q ss_pred CCEEeEEEEEEecC---------------------CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccc
Q 004777 39 NGQRRILISGSIHY---------------------PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (731)
Q Consensus 39 dG~~~~~~sG~~Hy---------------------~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~ 97 (731)
.+++..+.|.+.|| .|+..+.-++.|++.++.|..-+- |.=+.=...-|.+ -
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~--vvat~Gtt~~Ga~-----D 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFA--VVATAGTTNTGAI-----D 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEE--EEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccccee--eeccCCCcccccc-----c
Confidence 45677788887888 355666667777777777764321 1112223333333 3
Q ss_pred cHHHHHHHHHHcCCEEEec
Q 004777 98 DLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 98 dl~~fl~la~~~GL~vilr 116 (731)
||.++.++|+++++++.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 7888888888888877665
No 263
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.47 E-value=2.3e+02 Score=28.71 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=54.6
Q ss_pred EeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcce--eecccccHHHHHHHHHHcCCEEEeccCc
Q 004777 42 RRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (731)
Q Consensus 42 ~~~~~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~y--dF~g~~dl~~fl~la~~~GL~vilr~GP 119 (731)
++.+++|+.+....+...=+..++.+++.|..+....+. . ..+ ++.. ++ +.-++.++++..++++-.||.-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~-~-l~~-~~~~~~~~-~~~~~~~~~~~i~~AD~iIi~tP-- 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ-N-FAP-EDLLYARF-DSPALKTFTEQLAQADGLIVATP-- 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc-C-CCh-HHHHhccC-CCHHHHHHHHHHHHCCEEEEECC--
Confidence 467888988876667777778888888899766554322 1 111 1000 11 12489999999999999999887
Q ss_pred ccccccCCCCCCeEe
Q 004777 120 YVCAEWNFGGFPVWL 134 (731)
Q Consensus 120 YicaEw~~GG~P~WL 134 (731)
|| +|++|+-|
T Consensus 76 ----~Y-~~s~pg~L 85 (191)
T PRK10569 76 ----VY-KASFSGAL 85 (191)
T ss_pred ----cc-CCCCCHHH
Confidence 66 55655433
No 264
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.41 E-value=5.5e+02 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=54.0
Q ss_pred cEEEC-CEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecc--cccHHHHHHHHHHcC
Q 004777 35 AILIN-GQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKTVQRVG 110 (731)
Q Consensus 35 ~f~ld-G~~~~~~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g--~~dl~~fl~la~~~G 110 (731)
...+. ++|++++.| +=-+ .++.-.+.-+.+|++|...++-+.|= |+---|.|.| ..-|.-+-+.+++.|
T Consensus 93 ~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~G 165 (352)
T PRK13396 93 PVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREATG 165 (352)
T ss_pred CeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHcC
Confidence 34554 566888888 2222 67777788899999999999975544 4444477764 355666667788999
Q ss_pred CEEEecc
Q 004777 111 LYAHLRI 117 (731)
Q Consensus 111 L~vilr~ 117 (731)
|.++-.|
T Consensus 166 l~~~tev 172 (352)
T PRK13396 166 LGIITEV 172 (352)
T ss_pred CcEEEee
Confidence 9988775
No 265
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=20.39 E-value=2.1e+02 Score=29.77 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEE
Q 004777 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (731)
Q Consensus 60 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 114 (731)
=.+-++.|+++|+.+|.. +.|+--+ .|-++++++|+++||.|+
T Consensus 171 G~~Tv~~~~~ag~~~lav---------eAg~tl~---ld~~~~i~~Ad~~gi~i~ 213 (214)
T PF06230_consen 171 GPDTVENAAEAGLAGLAV---------EAGKTLI---LDREEVIALADKAGIFIV 213 (214)
T ss_pred CHHHHHHHHHcCCeEEEE---------ecCcEEE---ecHHHHHHHHHHcCCEEe
Confidence 346789999999999988 3333333 278899999999999875
No 266
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.21 E-value=2.7e+02 Score=30.58 Aligned_cols=53 Identities=32% Similarity=0.607 Sum_probs=39.7
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEec
Q 004777 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (731)
Q Consensus 53 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 116 (731)
...+.+.|.+.+++++++|+..|. |.--||-= +.|+.++++.|++.|+.+.+-
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~----~~GGEPll-------~~~~~~ii~~~~~~g~~~~l~ 87 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLH----FSGGEPLA-------RPDLVELVAHARRLGLYTNLI 87 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEE----EeCccccc-------cccHHHHHHHHHHcCCeEEEE
Confidence 346889999999999999875543 34466641 137789999999999987654
No 267
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.03 E-value=1.5e+02 Score=31.53 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=40.3
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcceeecccccHHHHHHHHHHcCCEEEecc
Q 004777 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (731)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 117 (731)
+++-.++.|.. .+.|+.+.+.|+..|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 74 ~~~~~~~~~~~----~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 74 IAVMVDYGNDD----IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred EEEEECCCCCC----HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 34445554533 3467888999999999977554 343 77889999999999877654
Done!