Query 004778
Match_columns 731
No_of_seqs 292 out of 1409
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 12:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 3.8E-39 8.1E-44 370.1 10.5 597 22-731 328-989 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 2.4E-17 5.2E-22 139.5 8.4 73 19-91 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 5.5E-17 1.2E-21 137.5 8.3 74 19-94 1-74 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 8.9E-17 1.9E-21 135.6 8.7 75 19-93 1-75 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.7 3E-16 6.5E-21 131.3 9.2 75 19-93 1-75 (76)
6 cd01802 AN1_N ubiquitin-like d 99.7 3.1E-16 6.6E-21 142.5 9.5 78 16-93 25-102 (103)
7 cd01803 Ubiquitin Ubiquitin. U 99.7 3.2E-16 6.9E-21 131.1 8.6 76 19-94 1-76 (76)
8 cd01810 ISG15_repeat2 ISG15 ub 99.6 3.4E-16 7.3E-21 132.7 7.9 73 21-93 1-73 (74)
9 cd01797 NIRF_N amino-terminal 99.6 3.7E-16 7.9E-21 135.1 8.1 74 19-92 1-76 (78)
10 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 5.2E-16 1.1E-20 133.0 8.4 72 18-89 1-72 (73)
11 cd01805 RAD23_N Ubiquitin-like 99.6 8.3E-16 1.8E-20 129.8 9.0 74 19-92 1-76 (77)
12 cd01809 Scythe_N Ubiquitin-lik 99.6 1.3E-15 2.8E-20 126.2 8.4 72 19-90 1-72 (72)
13 cd01804 midnolin_N Ubiquitin-l 99.6 1.4E-15 3E-20 131.0 8.8 76 18-94 1-76 (78)
14 cd01798 parkin_N amino-termina 99.6 9.4E-16 2E-20 128.3 7.3 70 21-90 1-70 (70)
15 cd01794 DC_UbP_C dendritic cel 99.6 1.9E-15 4.2E-20 128.2 7.1 69 21-89 1-69 (70)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 4.1E-15 8.9E-20 128.2 8.3 75 18-92 2-78 (80)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 6.2E-15 1.3E-19 123.9 7.7 71 19-90 1-71 (71)
18 PF00240 ubiquitin: Ubiquitin 99.5 1.2E-14 2.5E-19 120.3 7.7 68 24-91 1-68 (69)
19 cd01790 Herp_N Homocysteine-re 99.5 1.1E-14 2.3E-19 127.4 7.6 72 18-89 1-78 (79)
20 cd01796 DDI1_N DNA damage indu 99.5 3.9E-14 8.4E-19 119.9 7.1 68 21-88 1-70 (71)
21 cd01812 BAG1_N Ubiquitin-like 99.5 5.2E-14 1.1E-18 116.8 7.6 70 19-89 1-70 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 6.4E-14 1.4E-18 119.7 7.6 69 26-94 5-73 (76)
23 cd01763 Sumo Small ubiquitin-r 99.5 1.9E-13 4.2E-18 120.0 10.4 82 13-94 6-87 (87)
24 TIGR00601 rad23 UV excision re 99.5 1.2E-13 2.6E-18 150.2 9.5 76 19-94 1-79 (378)
25 cd01813 UBP_N UBP ubiquitin pr 99.5 1.3E-13 2.9E-18 118.1 7.6 70 19-89 1-73 (74)
26 KOG0005 Ubiquitin-like protein 99.4 5.8E-14 1.3E-18 117.0 4.4 70 19-88 1-70 (70)
27 KOG0010 Ubiquitin-like protein 99.4 1.4E-13 3.1E-18 151.8 7.5 79 17-96 14-92 (493)
28 KOG0003 Ubiquitin/60s ribosoma 99.4 1.5E-14 3.3E-19 132.4 -0.1 76 19-94 1-76 (128)
29 KOG0004 Ubiquitin/40S ribosoma 99.4 6.8E-14 1.5E-18 135.1 3.8 78 19-96 1-78 (156)
30 smart00213 UBQ Ubiquitin homol 99.4 1.3E-12 2.9E-17 104.8 6.8 64 19-83 1-64 (64)
31 cd01799 Hoil1_N Ubiquitin-like 99.2 1.5E-11 3.4E-16 106.0 7.5 68 21-89 5-74 (75)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 8.5E-12 1.8E-16 108.4 4.7 57 34-90 15-75 (75)
33 cd01814 NTGP5 Ubiquitin-like N 99.2 2.2E-11 4.7E-16 112.9 6.1 79 16-94 2-94 (113)
34 cd01769 UBL Ubiquitin-like dom 99.2 5.4E-11 1.2E-15 96.6 7.4 68 22-89 1-68 (69)
35 KOG0011 Nucleotide excision re 99.2 4E-11 8.7E-16 127.4 6.9 75 19-93 1-77 (340)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 2.2E-10 4.9E-15 95.8 8.4 71 19-89 1-72 (72)
37 KOG4248 Ubiquitin-like protein 98.9 1.3E-09 2.8E-14 128.4 6.7 74 19-93 3-76 (1143)
38 cd01795 USP48_C USP ubiquitin- 98.9 2.2E-09 4.7E-14 98.0 6.5 65 29-93 15-80 (107)
39 cd01789 Alp11_N Ubiquitin-like 98.9 1E-08 2.2E-13 90.0 9.1 72 19-90 2-81 (84)
40 KOG0001 Ubiquitin and ubiquiti 98.8 1.5E-08 3.3E-13 81.0 8.8 72 21-92 2-73 (75)
41 PF14560 Ubiquitin_2: Ubiquiti 98.7 5.4E-08 1.2E-12 85.3 8.1 72 19-90 2-83 (87)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.6 1.4E-07 2.9E-12 87.7 9.6 76 18-93 2-91 (111)
43 PLN02560 enoyl-CoA reductase 98.6 7.5E-08 1.6E-12 103.0 7.8 69 19-87 1-80 (308)
44 cd01788 ElonginB Ubiquitin-lik 98.5 5.6E-07 1.2E-11 84.1 8.1 72 19-91 3-81 (119)
45 cd01801 Tsc13_N Ubiquitin-like 98.4 5.2E-07 1.1E-11 77.6 6.5 68 20-87 2-74 (77)
46 cd00196 UBQ Ubiquitin-like pro 98.4 1.3E-06 2.9E-11 65.4 7.1 67 23-89 2-68 (69)
47 cd01811 OASL_repeat1 2'-5' oli 98.3 3.1E-06 6.8E-11 74.0 7.6 73 19-92 1-78 (80)
48 PF11543 UN_NPL4: Nuclear pore 98.1 8.1E-06 1.8E-10 71.8 6.3 71 17-88 3-78 (80)
49 KOG1769 Ubiquitin-like protein 97.9 9.7E-05 2.1E-09 67.8 10.5 79 16-94 18-96 (99)
50 KOG1872 Ubiquitin-specific pro 97.8 3.9E-05 8.5E-10 85.7 6.8 73 19-92 4-77 (473)
51 KOG3493 Ubiquitin-like protein 97.7 1.3E-05 2.8E-10 68.6 1.9 72 18-89 1-72 (73)
52 KOG0006 E3 ubiquitin-protein l 97.6 7.6E-05 1.6E-09 80.1 6.0 71 19-89 1-74 (446)
53 KOG0004 Ubiquitin/40S ribosoma 97.3 7.6E-05 1.6E-09 73.2 1.0 47 101-147 2-51 (156)
54 KOG0003 Ubiquitin/60s ribosoma 97.3 6.1E-05 1.3E-09 70.1 -0.1 39 105-143 8-47 (128)
55 PF08817 YukD: WXG100 protein 97.2 0.00085 1.8E-08 58.2 6.3 71 18-88 2-79 (79)
56 KOG4495 RNA polymerase II tran 97.0 0.0014 3E-08 60.3 5.9 61 19-80 3-65 (110)
57 cd01802 AN1_N ubiquitin-like d 97.0 7.5E-05 1.6E-09 68.4 -2.4 62 76-142 9-73 (103)
58 PF00789 UBX: UBX domain; Int 96.8 0.011 2.3E-07 51.1 9.4 74 15-88 3-81 (82)
59 KOG0005 Ubiquitin-like protein 96.6 0.00048 1E-08 58.5 -0.4 43 103-145 6-49 (70)
60 PF10302 DUF2407: DUF2407 ubiq 96.4 0.0071 1.5E-07 55.4 5.8 57 21-77 3-64 (97)
61 smart00166 UBX Domain present 96.1 0.034 7.3E-07 48.3 8.6 71 17-87 3-78 (80)
62 COG5417 Uncharacterized small 96.1 0.025 5.3E-07 50.2 7.5 70 19-88 5-81 (81)
63 KOG4583 Membrane-associated ER 96.1 0.00074 1.6E-08 73.2 -2.4 80 15-94 6-91 (391)
64 cd01793 Fubi Fubi ubiquitin-li 96.1 0.00029 6.2E-09 60.0 -4.5 36 107-142 8-44 (74)
65 KOG0013 Uncharacterized conser 96.1 0.011 2.3E-07 61.1 5.8 76 16-91 143-221 (231)
66 PF13019 Telomere_Sde2: Telome 95.9 0.03 6.5E-07 55.8 8.2 77 19-95 1-89 (162)
67 cd01767 UBX UBX (ubiquitin reg 95.7 0.071 1.5E-06 45.9 8.7 69 18-88 2-75 (77)
68 PF11470 TUG-UBL1: GLUT4 regul 95.5 0.038 8.1E-07 47.5 6.0 62 26-87 4-65 (65)
69 COG5227 SMT3 Ubiquitin-like pr 95.4 0.021 4.6E-07 52.2 4.4 78 17-94 23-100 (103)
70 cd01770 p47_UBX p47-like ubiqu 95.3 0.11 2.5E-06 45.6 8.6 69 17-85 3-75 (79)
71 cd01794 DC_UbP_C dendritic cel 95.2 0.0014 3E-08 56.1 -3.6 38 105-142 6-44 (70)
72 cd01772 SAKS1_UBX SAKS1-like U 95.1 0.13 2.9E-06 44.9 8.4 70 17-87 3-77 (79)
73 cd01807 GDX_N ubiquitin-like d 94.6 0.0019 4E-08 55.0 -4.3 38 105-142 8-46 (74)
74 PTZ00044 ubiquitin; Provisiona 94.4 0.002 4.4E-08 54.5 -4.5 38 105-142 8-46 (76)
75 cd01774 Faf1_like2_UBX Faf1 ik 94.3 0.27 5.8E-06 44.0 8.6 70 17-87 3-82 (85)
76 KOG1639 Steroid reductase requ 94.2 0.075 1.6E-06 56.3 5.4 69 19-87 1-76 (297)
77 cd01796 DDI1_N DNA damage indu 94.1 0.004 8.7E-08 53.0 -3.3 37 106-142 8-45 (71)
78 KOG3206 Alpha-tubulin folding 94.0 0.11 2.3E-06 53.9 6.1 74 19-92 2-83 (234)
79 cd01810 ISG15_repeat2 ISG15 ub 93.6 0.0047 1E-07 52.7 -3.8 38 105-142 6-44 (74)
80 cd01773 Faf1_like1_UBX Faf1 ik 93.5 0.53 1.2E-05 42.3 8.9 74 15-89 2-80 (82)
81 cd01771 Faf1_UBX Faf1 UBX doma 93.5 0.55 1.2E-05 41.6 8.9 72 16-88 2-78 (80)
82 cd01798 parkin_N amino-termina 92.8 0.0066 1.4E-07 51.0 -4.0 38 105-142 6-44 (70)
83 cd01797 NIRF_N amino-terminal 92.5 0.0083 1.8E-07 52.3 -3.9 38 105-142 8-48 (78)
84 cd01799 Hoil1_N Ubiquitin-like 92.4 0.013 2.8E-07 51.0 -2.8 37 105-142 10-47 (75)
85 cd01791 Ubl5 UBL5 ubiquitin-li 92.2 0.011 2.4E-07 51.2 -3.5 38 105-142 9-47 (73)
86 cd01800 SF3a120_C Ubiquitin-li 92.0 0.011 2.3E-07 50.9 -3.8 39 105-143 5-44 (76)
87 PF09379 FERM_N: FERM N-termin 91.2 1 2.2E-05 38.3 7.4 68 23-90 1-77 (80)
88 cd01806 Nedd8 Nebb8-like ubiq 90.2 0.019 4.1E-07 48.1 -3.9 38 105-142 8-46 (76)
89 PF15044 CLU_N: Mitochondrial 90.0 0.46 1E-05 41.7 4.3 56 35-90 1-58 (76)
90 cd01813 UBP_N UBP ubiquitin pr 89.9 0.027 5.9E-07 48.7 -3.3 36 106-141 8-44 (74)
91 cd01803 Ubiquitin Ubiquitin. U 89.6 0.019 4.2E-07 48.0 -4.4 38 105-142 8-46 (76)
92 PLN02799 Molybdopterin synthas 89.6 1.7 3.6E-05 37.8 7.5 69 18-91 1-79 (82)
93 cd00754 MoaD Ubiquitin domain 89.4 1.9 4.1E-05 36.6 7.6 58 30-92 17-78 (80)
94 cd01804 midnolin_N Ubiquitin-l 89.3 0.022 4.7E-07 49.4 -4.3 38 105-142 9-47 (78)
95 KOG0012 DNA damage inducible p 88.9 0.69 1.5E-05 51.4 5.6 66 27-92 11-78 (380)
96 cd01805 RAD23_N Ubiquitin-like 88.3 0.031 6.8E-07 47.3 -4.0 38 105-142 8-48 (77)
97 PRK06437 hypothetical protein; 87.7 3.3 7.1E-05 35.4 7.9 55 27-90 9-63 (67)
98 cd06406 PB1_P67 A PB1 domain i 87.7 2.6 5.6E-05 38.0 7.4 45 20-66 4-48 (80)
99 PRK08364 sulfur carrier protei 87.5 4 8.7E-05 34.9 8.3 63 18-90 4-66 (70)
100 cd06407 PB1_NLP A PB1 domain i 87.5 2.9 6.4E-05 37.3 7.7 71 19-90 1-81 (82)
101 cd01809 Scythe_N Ubiquitin-lik 86.4 0.037 8.1E-07 45.9 -4.5 38 105-142 8-46 (72)
102 smart00295 B41 Band 4.1 homolo 86.1 5.6 0.00012 38.7 9.7 75 17-91 2-84 (207)
103 smart00666 PB1 PB1 domain. Pho 85.7 3.4 7.4E-05 35.4 7.0 47 19-66 2-48 (81)
104 cd01812 BAG1_N Ubiquitin-like 85.4 0.079 1.7E-06 44.0 -3.0 36 107-142 9-45 (71)
105 PRK06488 sulfur carrier protei 85.4 4.5 9.8E-05 33.8 7.4 62 19-91 1-62 (65)
106 cd01792 ISG15_repeat1 ISG15 ub 85.2 0.084 1.8E-06 45.8 -3.1 37 105-141 10-49 (80)
107 PF12754 Blt1: Cell-cycle cont 85.1 0.27 5.9E-06 53.5 0.0 68 12-79 72-159 (309)
108 PF14836 Ubiquitin_3: Ubiquiti 83.9 4.7 0.0001 36.9 7.3 65 29-94 14-84 (88)
109 cd01763 Sumo Small ubiquitin-r 83.0 0.14 3E-06 45.4 -2.7 41 105-145 19-60 (87)
110 PF00240 ubiquitin: Ubiquitin 80.7 0.076 1.6E-06 44.0 -4.9 38 105-142 3-41 (69)
111 cd06409 PB1_MUG70 The MUG70 pr 80.5 4.3 9.3E-05 37.0 5.7 45 20-64 2-49 (86)
112 TIGR01687 moaD_arch MoaD famil 80.0 8.8 0.00019 33.5 7.5 60 29-92 16-86 (88)
113 cd01808 hPLIC_N Ubiquitin-like 79.5 0.14 3.1E-06 43.2 -3.7 33 110-142 12-45 (71)
114 cd01815 BMSC_UbP_N Ubiquitin-l 79.5 0.2 4.3E-06 44.3 -2.9 29 116-144 19-51 (75)
115 PF11620 GABP-alpha: GA-bindin 79.2 4.3 9.4E-05 37.2 5.3 63 30-92 4-66 (88)
116 TIGR01682 moaD molybdopterin c 79.1 13 0.00029 32.1 8.2 58 30-92 17-78 (80)
117 PF14453 ThiS-like: ThiS-like 78.7 4.6 0.0001 34.3 5.0 56 19-90 1-56 (57)
118 cd06408 PB1_NoxR The PB1 domai 78.3 9.5 0.00021 34.8 7.3 47 18-66 2-48 (86)
119 PF10790 DUF2604: Protein of U 75.8 8.5 0.00018 33.8 5.9 65 27-91 4-72 (76)
120 cd01790 Herp_N Homocysteine-re 75.0 0.33 7.3E-06 43.2 -2.8 38 106-143 10-52 (79)
121 cd01795 USP48_C USP ubiquitin- 75.0 0.45 9.8E-06 44.6 -2.1 35 109-143 16-51 (107)
122 PF00564 PB1: PB1 domain; Int 74.9 10 0.00022 32.4 6.3 47 18-65 1-48 (84)
123 TIGR00601 rad23 UV excision re 74.8 0.34 7.4E-06 54.1 -3.5 39 105-143 8-50 (378)
124 cd05992 PB1 The PB1 domain is 74.0 12 0.00025 31.8 6.4 45 20-65 2-47 (81)
125 cd06398 PB1_Joka2 The PB1 doma 73.0 14 0.00031 33.7 7.0 71 20-91 2-88 (91)
126 PF02597 ThiS: ThiS family; I 72.8 14 0.0003 31.0 6.5 62 30-93 13-76 (77)
127 TIGR02958 sec_mycoba_snm4 secr 72.4 16 0.00035 41.9 8.9 76 19-95 3-85 (452)
128 PF12436 USP7_ICP0_bdg: ICP0-b 72.3 7.6 0.00016 40.9 5.9 80 13-92 63-154 (249)
129 PRK06083 sulfur carrier protei 72.3 24 0.00053 31.8 8.2 68 14-91 14-81 (84)
130 KOG2086 Protein tyrosine phosp 71.8 6.4 0.00014 44.3 5.4 69 17-85 304-376 (380)
131 smart00455 RBD Raf-like Ras-bi 71.6 10 0.00022 32.9 5.5 45 21-65 2-46 (70)
132 PRK05863 sulfur carrier protei 71.1 18 0.00039 30.5 6.8 57 27-91 6-62 (65)
133 smart00144 PI3K_rbd PI3-kinase 69.9 25 0.00054 32.7 8.1 75 17-91 16-105 (108)
134 PRK08053 sulfur carrier protei 69.5 32 0.0007 29.0 8.0 63 19-91 1-63 (66)
135 KOG2982 Uncharacterized conser 69.4 7.3 0.00016 43.3 5.1 56 33-88 352-415 (418)
136 smart00213 UBQ Ubiquitin homol 69.1 0.34 7.3E-06 38.7 -3.9 35 108-142 10-45 (64)
137 PRK05659 sulfur carrier protei 68.8 29 0.00062 28.9 7.5 58 27-91 6-63 (66)
138 cd01760 RBD Ubiquitin-like dom 68.6 12 0.00026 32.9 5.3 45 21-65 2-46 (72)
139 PF00794 PI3K_rbd: PI3-kinase 67.0 32 0.00069 31.4 8.0 75 16-90 14-102 (106)
140 PF10209 DUF2340: Uncharacteri 65.8 9.1 0.0002 37.1 4.4 57 34-90 21-108 (122)
141 cd00565 ThiS ThiaminS ubiquiti 63.1 26 0.00057 29.3 6.2 59 27-92 5-63 (65)
142 cd01768 RA RA (Ras-associating 62.7 48 0.001 28.8 8.0 35 28-62 12-48 (87)
143 cd01787 GRB7_RA RA (RAS-associ 61.5 49 0.0011 30.3 7.9 59 19-77 3-68 (85)
144 PF02196 RBD: Raf-like Ras-bin 60.5 33 0.00072 29.7 6.5 51 21-71 3-55 (71)
145 KOG2507 Ubiquitin regulatory p 58.4 69 0.0015 37.2 10.1 78 16-93 312-394 (506)
146 PRK06944 sulfur carrier protei 58.4 52 0.0011 27.2 7.1 58 27-92 6-63 (65)
147 cd01814 NTGP5 Ubiquitin-like N 57.7 1.2 2.6E-05 42.4 -3.0 32 112-143 20-59 (113)
148 TIGR01683 thiS thiamine biosyn 57.2 45 0.00097 27.9 6.6 59 27-92 4-62 (64)
149 PF08337 Plexin_cytopl: Plexin 56.6 26 0.00056 41.4 6.8 76 17-92 188-291 (539)
150 PF00788 RA: Ras association ( 53.7 70 0.0015 27.5 7.5 56 20-75 4-72 (93)
151 cd06396 PB1_NBR1 The PB1 domai 53.2 38 0.00083 30.7 5.8 36 19-55 1-38 (81)
152 cd06411 PB1_p51 The PB1 domain 53.1 37 0.00081 30.7 5.7 36 30-65 8-43 (78)
153 cd06410 PB1_UP2 Uncharacterize 52.8 39 0.00084 31.3 6.0 40 23-63 17-56 (97)
154 KOG4250 TANK binding protein k 51.0 27 0.00059 42.4 5.8 42 27-68 323-364 (732)
155 KOG2561 Adaptor protein NUB1, 50.9 5.6 0.00012 45.8 0.3 59 32-90 53-111 (568)
156 PRK11840 bifunctional sulfur c 50.0 54 0.0012 36.6 7.6 67 19-95 1-67 (326)
157 KOG0001 Ubiquitin and ubiquiti 49.9 1.7 3.7E-05 34.4 -2.9 37 105-141 7-44 (75)
158 PRK11130 moaD molybdopterin sy 48.4 1.4E+02 0.0031 26.0 8.6 54 33-91 19-78 (81)
159 PRK07440 hypothetical protein; 48.3 1.2E+02 0.0026 26.2 7.9 64 18-91 4-67 (70)
160 PRK07696 sulfur carrier protei 44.0 1.3E+02 0.0028 25.7 7.5 58 27-91 6-64 (67)
161 PF11069 DUF2870: Protein of u 44.0 24 0.00053 33.1 3.3 35 60-94 3-38 (98)
162 cd01764 Urm1 Urm1-like ubuitin 42.4 75 0.0016 29.0 6.1 58 33-92 23-92 (94)
163 KOG0007 Splicing factor 3a, su 42.3 11 0.00024 41.5 1.0 50 25-74 289-339 (341)
164 KOG2689 Predicted ubiquitin re 42.1 91 0.002 34.2 7.6 71 17-87 209-284 (290)
165 cd01769 UBL Ubiquitin-like dom 40.7 2.3 4.9E-05 34.3 -3.5 37 106-142 6-43 (69)
166 PF14533 USP7_C2: Ubiquitin-sp 40.1 87 0.0019 32.4 6.9 104 29-134 34-160 (213)
167 PF14847 Ras_bdg_2: Ras-bindin 38.4 74 0.0016 30.0 5.6 36 21-56 3-38 (105)
168 PF10407 Cytokin_check_N: Cdc1 38.3 85 0.0018 28.0 5.6 62 29-91 3-71 (73)
169 PF02017 CIDE-N: CIDE-N domain 38.2 94 0.002 28.1 5.9 64 21-90 5-71 (78)
170 KOG3751 Growth factor receptor 37.3 71 0.0015 37.9 6.3 77 17-93 187-274 (622)
171 PF14451 Ub-Mut7C: Mut7-C ubiq 36.6 1E+02 0.0022 27.7 6.0 54 28-90 22-76 (81)
172 KOG3439 Protein conjugation fa 36.3 1.2E+02 0.0027 29.3 6.6 51 17-67 29-83 (116)
173 PF14732 UAE_UbL: Ubiquitin/SU 35.6 47 0.001 30.0 3.7 56 33-88 2-67 (87)
174 KOG0010 Ubiquitin-like protein 34.5 9.8 0.00021 44.1 -1.0 34 110-143 27-61 (493)
175 PRK01777 hypothetical protein; 33.1 2.2E+02 0.0047 26.4 7.6 66 18-92 3-78 (95)
176 PF02505 MCR_D: Methyl-coenzym 32.8 70 0.0015 32.3 4.6 53 18-77 67-120 (153)
177 cd01777 SNX27_RA Ubiquitin dom 32.5 85 0.0018 29.0 4.8 42 19-60 2-43 (87)
178 KOG1364 Predicted ubiquitin re 30.8 58 0.0012 36.7 4.1 66 19-84 278-349 (356)
179 KOG4146 Ubiquitin-like protein 30.4 4.1E+02 0.0089 25.2 8.8 76 17-93 3-100 (101)
180 cd06397 PB1_UP1 Uncharacterize 30.3 1.4E+02 0.0029 27.5 5.6 44 20-64 2-45 (82)
181 TIGR03260 met_CoM_red_D methyl 29.6 82 0.0018 31.7 4.5 53 18-77 66-118 (150)
182 cd01817 RGS12_RBD Ubiquitin do 29.5 1.5E+02 0.0032 26.7 5.6 43 23-65 4-46 (73)
183 COG2104 ThiS Sulfur transfer p 27.7 3.6E+02 0.0077 23.6 7.6 62 19-90 3-64 (68)
184 KOG0011 Nucleotide excision re 26.7 13 0.00027 41.4 -1.7 41 103-143 6-49 (340)
185 smart00266 CAD Domains present 25.8 1.7E+02 0.0037 26.3 5.4 50 38-90 18-69 (74)
186 PRK05738 rplW 50S ribosomal pr 25.7 2.3E+02 0.005 26.0 6.4 40 28-67 20-60 (92)
187 PTZ00380 microtubule-associate 25.1 1.1E+02 0.0024 29.8 4.4 61 16-76 25-88 (121)
188 PF12436 USP7_ICP0_bdg: ICP0-b 24.9 1.6E+02 0.0034 31.3 5.9 45 18-62 176-223 (249)
189 PF11816 DUF3337: Domain of un 24.2 1.5E+02 0.0032 32.8 5.8 61 32-92 251-329 (331)
190 KOG4261 Talin [Cytoskeleton] 24.2 91 0.002 38.6 4.4 107 19-132 4-120 (1003)
191 COG0089 RplW Ribosomal protein 23.8 2.5E+02 0.0054 26.3 6.3 40 27-66 20-60 (94)
192 PF00276 Ribosomal_L23: Riboso 22.1 1.5E+02 0.0032 27.0 4.4 41 29-69 21-62 (91)
193 PLN02560 enoyl-CoA reductase 21.8 14 0.0003 40.5 -2.6 31 111-141 17-49 (308)
194 KOG4572 Predicted DNA-binding 21.8 1.5E+02 0.0032 37.2 5.5 62 27-88 3-68 (1424)
195 cd01611 GABARAP Ubiquitin doma 21.6 2.9E+02 0.0063 26.3 6.4 74 16-90 22-106 (112)
196 cd06539 CIDE_N_A CIDE_N domain 21.1 2.1E+02 0.0046 26.0 5.1 49 38-88 20-70 (78)
197 PF03671 Ufm1: Ubiquitin fold 20.8 3.7E+02 0.0081 24.4 6.4 57 32-88 19-76 (76)
198 PF08825 E2_bind: E2 binding d 20.8 1.4E+02 0.003 27.1 4.0 55 33-88 1-69 (84)
199 smart00314 RA Ras association 20.1 3.7E+02 0.0081 23.4 6.5 44 28-71 15-65 (90)
200 PF08783 DWNN: DWNN domain; I 20.1 2.1E+02 0.0046 25.6 4.9 33 22-54 2-36 (74)
201 cd01775 CYR1_RA Ubiquitin doma 20.1 3.7E+02 0.008 25.5 6.6 37 20-56 4-40 (97)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-39 Score=370.06 Aligned_cols=597 Identities=20% Similarity=0.185 Sum_probs=373.0
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCCCC-C-
Q 004778 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-G- 99 (731)
Q Consensus 22 tVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ss-~- 99 (731)
..|++....+...+.+..++...|.+|...++||...++|+|-|..++++..+..|+.+.....+..++.+.+.... +
T Consensus 328 l~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~t 407 (1143)
T KOG4248|consen 328 LRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVET 407 (1143)
T ss_pred hhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCCC
Confidence 34555666777777778888888999999999999999999999999999999999999999999988776544321 1
Q ss_pred CCCCC----CCCCCc-----ccccccCCccccccccccCCCCCcchhHHHHHhhcccCCCCCC---CCCCCC-Ccc--hh
Q 004778 100 THNLP----GTSRSH-----GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIG---SGGGGI-DLR--QE 164 (731)
Q Consensus 100 ~qI~v----~tG~ti-----tl~V~psdTVesVK~~Iq~EGIPpdqQRLIfavl~S~G~~~~~---~G~~~~-~~~--~~ 164 (731)
.+-++ .++..+ ...+.......-++...+-+++-.++-...-++...+|..++. ++..+. +.. ..
T Consensus 408 p~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pthq 487 (1143)
T KOG4248|consen 408 PAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTHQ 487 (1143)
T ss_pred cccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcce
Confidence 11111 111111 1222222222222221112233333333334444444443332 111111 111 00
Q ss_pred hccCCCCccCCCCCcCcc-cCCCCCCCCcccccCCCCccccCCCcCCCCCCCCCCCCCchh--------------hHHHH
Q 004778 165 HAMQRPERTSDAGSALDS-AHQQPEQGGTRFQSNRPHSAFGIPTAISLGTLQPPVIPDSLT--------------TLSQY 229 (731)
Q Consensus 165 ~~s~~~~~t~~~~g~~~~-~~~q~~q~G~~~~~~~~~~~~~~P~~~~~~~~~~~ViPDSLt--------------TLs~y 229 (731)
.-....+++ .+..... ...++++.+.+...+. .+. ++.-|||... +|..+
T Consensus 488 ~~~~pd~P~--i~p~ssg~e~~s~~q~~~glstd~---S~~----------q~~s~~dt~~~t~Pv~~lr~~vp~~l~~~ 552 (1143)
T KOG4248|consen 488 VIARPDGPG--IGPFSSGGEPNSPTQQGAGLSTDH---SLA----------QMVSGPDTQLTTIPVLVLRGCVPGMLPPP 552 (1143)
T ss_pred eecCCCCCC--CCCCCCCCCCcChhhhcccccccc---chh----------hhccCCCccceeeccchhhccchhhcCCc
Confidence 000011100 0000000 1122222211111111 111 1222233333 34444
Q ss_pred HHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004778 230 LSQLRHEFDGIGRGGGNNTAATNSTIEGNTNSASHPGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLENQAN 309 (731)
Q Consensus 230 l~rmr~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~lp~p~~L~~v~~~t~qll~~~a~~~Ls~la~qL~~~~~ 309 (731)
+++|...++ .+++. . ++.+.. .....+.++.|++|++|+.+|+|||+|..+.|||+|+++|++.++
T Consensus 553 ~~qv~~a~d----~~nq~--~---~n~q~p-----~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vs 618 (1143)
T KOG4248|consen 553 GPQVASALD----TGNQA--D---TNGQAP-----GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVS 618 (1143)
T ss_pred chhHHHhhh----ccccc--c---ccccCC-----CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcc
Confidence 444444442 11111 1 111222 245567899999999999999999999999999999999999999
Q ss_pred CCChhhhhhhh--hHHHHHhHHHHHHHHHHHhhccceeEeecCCCCcccccccCCeeEeCCCCCCccccCCCCCCCCCcc
Q 004778 310 VTDPSLRTSIQ--TTAWSAGLLLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLMVQPLPFQPGTSF 387 (731)
Q Consensus 310 ~tD~~~R~~iQ--~~a~~~G~~~q~Lga~LlelGRttmtLrmg~tp~ea~vn~GpAvfispsGpNpimVqp~p~q~~~~f 387 (731)
|+||..|+++| ++.++.|.+|+|||+.||||||||+|++||+| .+|+|+||||||+|+||+|++|||.+--.+|
T Consensus 619 vSdPsaral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~ 694 (1143)
T KOG4248|consen 619 VSDPSARALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELF 694 (1143)
T ss_pred cCCCcchhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhh
Confidence 99999999999 99999999999999999999999999999999 8999999999999999999999999887777
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCceee-----------eEeecCccccCCCCccccccccCCCCCCCCCcccCCCCCCC
Q 004778 388 GAIPMGSVQPGSGLVNGRSAGFLPRRID-----------IQIRRGSSMVGSNAIQEERSNTQQAPGQGNTATASGTDNLG 456 (731)
Q Consensus 388 g~~~~gs~~~~~~~~~~~g~~~~pr~~~-----------i~i~~g~s~~~~~~~~~e~~~~q~~~~~~~~~~~s~~~~~~ 456 (731)
-.|=.+... -|....|...++|.++ |.+..|.+..++++++.+..++.+....++++...
T Consensus 695 Tsi~s~~~~---~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~p~------ 765 (1143)
T KOG4248|consen 695 TSIRSGNHI---VLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSMPD------ 765 (1143)
T ss_pred ccccccccc---ccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCCCC------
Confidence 665333211 1333344444455555 45555555666666666665555444444442211
Q ss_pred CCccccCCCCCCCCCCCCceeeeeeeeeeecccCCCCCCCCC-CCCCceeeeeccceeeeeeccccCCCCCCCCCCCCCC
Q 004778 457 SQATTRNSDGSSSAGESGVRVVPVRTMVAPVPAPFGRLPSDS-SSNPVSLYYPVLGRFQHVASGLVSGEQGHQVSGEHHP 535 (731)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~r~~p~rtvvaa~p~~~~r~ps~s-s~~~~g~~~p~~~r~q~~~~~~~~~~~~~q~~~e~~~ 535 (731)
-| -+|.+.-+..+|| ....|-.++|...+++|+-.--. ++ ..
T Consensus 766 ------------------------~t---~l~t~~~~~~~ds~lq~qm~~~~~dv~n~g~~Q~p~~---------ia-~~ 808 (1143)
T KOG4248|consen 766 ------------------------VT---NLPTGHPQPLQDSTLQPQLRSFFPDVYNGGHVQIPTP---------IA-IR 808 (1143)
T ss_pred ------------------------cc---cccCCCCCCCCchhhhhhhhhhchhhhccccccccch---------hh-hh
Confidence 11 2344555677777 77888999999999985422111 11 11
Q ss_pred CCCccCCCCCCCccccc-cCCCCCCCCCCCCCCccccccCCCceeeeecccCCCCCCChhhhhhhhhhHHHHHHhhCCCC
Q 004778 536 AGLQTEQPSVPDSIGQQ-NAEDPARNGSLANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQLLRNLFPGG 614 (731)
Q Consensus 536 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~in~~~~~g~~~~~~~~~~~~~~~~q~l~~~~~~~ 614 (731)
.++....+.+.|....+ ..-...|..+.. ..+| .+-++++.++|.|+++.|-|.+
T Consensus 809 ~a~~~~~~~l~~l~~e~~s~~a~~~~~ds~--------------------~~pg----~~l~sEr~N~i~q~vkpltps~ 864 (1143)
T KOG4248|consen 809 MALDTLGTGLEELVRESFSLVAVQRGVDSI--------------------IRPG----LRLLSERFNSIAQHVKPLTPSG 864 (1143)
T ss_pred hhhhhhccchhhhccccccccCcccCcCcc--------------------cccc----cchHHHHhhhhhhccccCCccc
Confidence 12334455666666333 333333332211 2233 6778889999999999998885
Q ss_pred ceeecCCCcccccCCCCccccccccccccccCCCccccccc------CcchhHHHH--HHHhhhhccccCCCCCCCCCCC
Q 004778 615 EIHVENGGLHGTASDSVPEHAATFRDRVVSSTGSSAAEASA------TDEGIFLSN--LLHQIMPFISQHSSAEPTVTPL 686 (731)
Q Consensus 615 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~eg~~~s~--~l~~imp~isq~~~~~~~~~~~ 686 (731)
....|....+.+..... +.++...+.+.+|-++.- +-||.|.|. ++.+||+||.|+++..-.+
T Consensus 865 -~aag~~e~~nq~~pe~~-----a~t~l~lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~va~si~a--- 935 (1143)
T KOG4248|consen 865 -FAAGLLELCNQALPECL-----ALTLLCLGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVVAESIPA--- 935 (1143)
T ss_pred -cchhhHHHHhccchhhH-----HHHHHhhcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhhhccCcc---
Confidence 55566666676665443 577888888888766644 339999887 9999999999999877663
Q ss_pred CCCcccccccCCCCCCC---CCCCCcc-------cccccCCCCCCCCCcccccCC
Q 004778 687 EDTNAFEHRMSQDSSTH---AGSSSVR-------TSRRQSDSEPSAPNPKRQKME 731 (731)
Q Consensus 687 ~~~~~~~~~~~~~ss~~---~~~s~~~-------~s~~~~~~~~~~pnskrqk~e 731 (731)
+-..--.++...+.|.+ .|++.+. .++++ .+.++++.+|+|+||
T Consensus 936 ~t~t~~~sn~rv~~s~q~~~e~~t~v~~~~~a~p~sq~~-~~sp~~~tsm~Q~te 989 (1143)
T KOG4248|consen 936 GTDTGLGSNRRVGDSPQALPEEPTEVQGAERASPESQRE-NASPAPGTSMEQATE 989 (1143)
T ss_pred cchhhccccccccccccccccccchhccccccCcccccc-cCCCCCcccHHHHhh
Confidence 22333445555666665 3567776 66666 889999999999986
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.71 E-value=2.4e-17 Score=139.50 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=71.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||+|+|+++|++|+|+++++|||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.69 E-value=5.5e-17 Score=137.52 Aligned_cols=74 Identities=30% Similarity=0.345 Sum_probs=70.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+||+. +++.++|++++||.+||++|++++|+|+++|||+|+||+|+|+++|++|+|++++||||+++++++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 789999999999999999999999999999999999999999999999999999999999998763
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.68 E-value=8.9e-17 Score=135.64 Aligned_cols=75 Identities=33% Similarity=0.469 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999865
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.66 E-value=3e-16 Score=131.26 Aligned_cols=75 Identities=32% Similarity=0.533 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999765
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.66 E-value=3.1e-16 Score=142.47 Aligned_cols=78 Identities=31% Similarity=0.444 Sum_probs=75.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
...|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|+++|++|+|+++++|||++++++
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.65 E-value=3.2e-16 Score=131.13 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+++|++|+|+++++|||++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998763
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.65 E-value=3.4e-16 Score=132.70 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=70.9
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999865
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.64 E-value=3.7e-16 Score=135.10 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=70.8
Q ss_pred EEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 19 MqItVKtLdGKt-~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
|+|+||+++|++ +.++ +++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999999874
No 10
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.64 E-value=5.2e-16 Score=132.97 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=70.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
+|.|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.|+.|+|+++|++|||++|++|||+.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999975
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.63 E-value=8.3e-16 Score=129.84 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGI--PpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
|+|+||+.+|+++.++|++++||.+||++|++++++ ++++|||+|+|++|+|+.+|++|+|++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999865
No 12
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.3e-15 Score=126.19 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|++|||++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.62 E-value=1.4e-15 Score=130.97 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=72.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
.|+|+||...|+.+.++|+++.||.+||++|+++.++++++|||+|+||.|+|+ +|++|||+++++|||+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 389999999999999999999999999999999999999999999999999999 9999999999999999988653
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.62 E-value=9.4e-16 Score=128.34 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+||+|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=1.9e-15 Score=128.18 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
++||.++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=4.1e-15 Score=128.18 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=72.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL--IF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.|+|+||.+.|+++.++|++++||.+||++|+++.++++++||| +|+|+.|+|+++|++|||++|++|||++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999999999853
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=6.2e-15 Score=123.94 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
|+|+||+..|+ +.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999985
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.55 E-value=1.2e-14 Score=120.28 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=66.1
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 24 KtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
|+++|+.|.++|++++||.+||++|++++++|+++|+|+|+|++|+|+.+|.+|+|+++++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 19
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.55 E-value=1.1e-14 Score=127.38 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=64.9
Q ss_pred cEEEEEEeCCCcEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCccccccccc--ccCCCEEEEee
Q 004778 18 TIEIKIKTLDSQTYT--LRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (731)
Q Consensus 18 tMqItVKtLdGKt~t--LeVdpsdTV~dLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsdYG--IkdGsTIhLVl 89 (731)
.|.|+||+++++++. ++|++++||.+||++|++..+ .++++|||||+||+|+|+.+|++|. +.+++|||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 378999999999955 555899999999999999874 5579999999999999999999996 99999999997
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.50 E-value=3.9e-14 Score=119.90 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcc-cccccccccCCCEEEEe
Q 004778 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 21 ItVKtL-dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsdYGIkdGsTIhLV 88 (731)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|+++++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999983
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.50 E-value=5.2e-14 Score=116.80 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
|+|+||+. |+.+.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999999974
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.49 E-value=6.4e-14 Score=119.72 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 26 LdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
++|+++.|+|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+++|++|+|+++++|||+++.+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999998764
No 23
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.48 E-value=1.9e-13 Score=119.97 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=77.9
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.+....|.|+|++.+|+++.++|.+++++..||++++++.|+++++|||+|+|+.|+|++|+++|+|+++++|++++++.
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004778 93 VP 94 (731)
Q Consensus 93 gg 94 (731)
++
T Consensus 86 GG 87 (87)
T cd01763 86 GG 87 (87)
T ss_pred cC
Confidence 63
No 24
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.2e-13 Score=150.24 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektG---IPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+||+++|++|.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999987664
No 25
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.46 E-value=1.3e-13 Score=118.15 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=66.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCcccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF---~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
|.|.||+ .|++|.++|++++||.+||++|++++++|+++|||+| +|+.|+|+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 6789999 7899999999999999999999999999999999996 99999999999999999999999973
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.8e-14 Score=116.96 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEe
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
|.|+||++.||.+.++++++++|..+|++|+++.||||.+|||+|.||.+.|+++-++|++.-|++|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 27
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.43 E-value=1.4e-13 Score=151.77 Aligned_cols=79 Identities=35% Similarity=0.579 Sum_probs=74.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ 96 (731)
..|+|+||+.+. +|.|.|..+.||.+||++|..++++++++++|||+||+|||+++|..|||+||+|||||+|....+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 569999999887 9999999999999999999999999999999999999999999999999999999999999765443
No 28
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-14 Score=132.37 Aligned_cols=76 Identities=36% Similarity=0.544 Sum_probs=74.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+++++++.||+++++|++++||..||.+|..++|||+++|+|+|+||.|+|..||++|+|+..+|||+++|+.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999986
No 29
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6.8e-14 Score=135.08 Aligned_cols=78 Identities=36% Similarity=0.543 Sum_probs=75.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ 96 (731)
|+|+|+++.++++.++|..++||..+|.+|+++++||+++|||||.|+.|+|+++|+||+|+..+||||++++.++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999987653
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=1.3e-12 Score=104.81 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGs 83 (731)
|+|+||+.+ +.+.++|++++||.+||++|+.++++|+++|+|+|+|+.|+|+++|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999999999999999999999999999999875
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.25 E-value=1.5e-11 Score=106.00 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=61.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-ccccccccccc-CCCEEEEee
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLk-DdkTLsdYGIk-dGsTIhLVl 89 (731)
|.=|...++++.++|++++||.+||++|++++|||+++||| |.|+.|. |+++|++|+|+ +|+++||.+
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 33345568999999999999999999999999999999999 9999885 67999999998 889999976
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.22 E-value=8.5e-12 Score=108.39 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=51.1
Q ss_pred Eec-CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 34 RVD-KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 34 eVd-psdTV~dLKekIaekt--GIP-peqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
+|. .++||.+||++|+++. +++ +++|||||+||.|+|+++|++|+|+++++|||+.+
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 344 4789999999999995 575 89999999999999999999999999999999864
No 33
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.20 E-value=2.2e-11 Score=112.89 Aligned_cols=79 Identities=28% Similarity=0.386 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHH-----HhCCC--CCCeEEEeCCeecCccccccccc------ccC
Q 004778 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIAS-----VTGVL--SEQQRLICRGKVLKDDQLLSAYH------VED 81 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~-tLeVdpsdTV~dLKekIae-----ktGIP--peqQRLIF~GKvLkDdkTLsdYG------Ikd 81 (731)
++.++|++|..+|..+ .+.+.+++||.+||++|++ ++++| +++|||||.||+|+|++||++|+ +..
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 3568999999999776 4789999999999999994 44555 99999999999999999999999 777
Q ss_pred CCEEEEeeecCCC
Q 004778 82 GHTLHMVVRQPVP 94 (731)
Q Consensus 82 GsTIhLVlRl~gg 94 (731)
..|+||++|.+..
T Consensus 82 ~~TmHvvlr~~~~ 94 (113)
T cd01814 82 VITMHVVVQPPLA 94 (113)
T ss_pred ceEEEEEecCCCC
Confidence 8999999997653
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.19 E-value=5.4e-11 Score=96.62 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.6
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 22 tVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
.||..+|+.+.+++++++||.+||++|++.+++++++|+|+|+|+.|+|+.+|.+|+|.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 37788899999999999999999999999999999999999999999999999999999999999875
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.16 E-value=4e-11 Score=127.45 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
|+|+||++++.+|+++|.+++||.++|++|+...| +|++.|+|||+||+|+|+.+|.+|+|+++..|.|++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 79999999999999999999999999999999998 9999999999999999999999999999999999998876
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.12 E-value=2.2e-10 Score=95.84 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
|+|+|++.+|+.+.+.|.+++++..|+++++++.+++. +.++|+|+|+.|++++|+++|+|++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999975
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.3e-09 Score=128.38 Aligned_cols=74 Identities=39% Similarity=0.663 Sum_probs=70.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
..|+||++|.++.+|.|...+||++||++|.++.+|+.+.|||||.|++|.|+|++.+|+| ||.+|||+-|.+.
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 3499999999999999999999999999999999999999999999999999999999999 9999999999543
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.91 E-value=2.2e-09 Score=97.98 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=59.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcc-cccccccccCCCEEEEeeecCC
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsdYGIkdGsTIhLVlRl~g 93 (731)
+...+.|++++||.+||.+|..++++++++|+|+|+|+.|.|+ ++|++|||..+++|+|+++.+-
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 3567889999999999999999999999999999999999655 8999999999999999987553
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.87 E-value=1e-08 Score=90.02 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=60.1
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCe-----ec-CcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLd-GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~GK-----vL-kDdkTLsdYGIkdGsTIhLVlR 90 (731)
+.|+|+... ....+.++.+.+||.+||++|+..+|+++..|||. |.|+ .| +|+++|.+|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 566776633 33455679999999999999999999999999994 8887 45 6779999999999999999853
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=81.01 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
+++++..|+.+.+++.+..+|..+|.+|+.+.+++.++|+|.|.|+.|.|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999999999999999999999999999999999999999999999999999999999998765
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.70 E-value=5.4e-08 Score=85.26 Aligned_cols=72 Identities=28% Similarity=0.500 Sum_probs=59.2
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C------eec-CcccccccccccCCCEEEEe
Q 004778 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G------KVL-KDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 19 MqItVKtLdG--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-G------KvL-kDdkTLsdYGIkdGsTIhLV 88 (731)
++|+|.+... +.+..++++++||.+||.+|+..+|++++.|+|.+. . ..| +|+++|.+|++++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6788887655 488899999999999999999999999999999876 2 124 56799999999999999997
Q ss_pred ee
Q 004778 89 VR 90 (731)
Q Consensus 89 lR 90 (731)
=.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 43
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.65 E-value=1.4e-07 Score=87.66 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=59.2
Q ss_pred cEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCcccccccccccCCC------
Q 004778 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (731)
Q Consensus 18 tMqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektG-------IPpeqQRLIF~GKvLkDdkTLsdYGIkdGs------ 83 (731)
.+.|+++..+|+ +..+.+++++||.+||+.|...+- ..+..+||||.||.|+|+++|++|.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 588999999999 778999999999999999987542 233678999999999999999999987655
Q ss_pred EEEEeeecCC
Q 004778 84 TLHMVVRQPV 93 (731)
Q Consensus 84 TIhLVlRl~g 93 (731)
++||+++...
T Consensus 82 vmHlvvrp~~ 91 (111)
T PF13881_consen 82 VMHLVVRPNA 91 (111)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEecCCC
Confidence 7999998654
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.61 E-value=7.5e-08 Score=102.95 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=61.6
Q ss_pred EEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCcccccccccccCCCEEEE
Q 004778 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 19 MqItVKtLdGKt~---tLeVdpsdTV~dLKekIaektGI-PpeqQRLIF~---G----KvLkDdkTLsdYGIkdGsTIhL 87 (731)
|+|+||..+||.+ +|+|+++.||.+||++|+++.++ ++++|||++. | +.|+|+++|++||++++++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998888887 79999999999999999999986 8999999983 3 4889999999999999998665
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.45 E-value=5.6e-07 Score=84.08 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=61.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccc-------cCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGI-------kdGsTIhLVlRl 91 (731)
|-|.||- ...+|.+++.++.||.+||++|+.....|+++|||+..+.+|+|+++|+|||+ +...+|-|.+|.
T Consensus 3 vFlmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 3344554 33457789999999999999999999999999999977789999999999999 667888888885
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.42 E-value=5.2e-07 Score=77.62 Aligned_cols=68 Identities=31% Similarity=0.359 Sum_probs=54.4
Q ss_pred EEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCcccccccccccCCCEEEE
Q 004778 20 EIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 20 qItVKtLdGKt~-tLeVd-psdTV~dLKekIaektG-IPpeqQRLI--F~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
+|.++....+.+ .++++ ++.||.+||+.|++..+ +++++|||. +.|+.|.|+++|.+|||++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 456665441333 24444 88999999999999876 578999885 8899999999999999999999876
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.38 E-value=1.3e-06 Score=65.39 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.3
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
|+..+++...+.+.+..||.+||++|.++++++++.++|+++|+.+++...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788889999999999999999999999999999999999999999988999999999999874
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.26 E-value=3.1e-06 Score=74.01 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=65.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecCcccccccccccCCCEEEEeeecC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G-----KvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
++|+||......+++.|+|..+|.+||++|....+++- .|||.|.. +.|.+.++|++|||..+..|.|+...+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 58999999999999999999999999999999999885 99999973 467899999999999998888886543
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.06 E-value=8.1e-06 Score=71.79 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=44.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CcccccccccccCCCEEEEe
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G---KvL--kDdkTLsdYGIkdGsTIhLV 88 (731)
..|-|.|++.+ ..+.|+|++++|+.+||++|.+.++++.+.|.|+.+- +.| .++++|+++||+.||.|+|.
T Consensus 3 ~~milRvrS~d-G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKD-GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SS-EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCC-CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 46899999976 4667899999999999999999999999999886542 345 46799999999999999874
No 49
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=9.7e-05 Score=67.79 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
...|.|+|+.-++....+.|..+.+...|++..+++.|+..+..|++|+|+.+++.+|=.+++.++++.|.++..+.++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 5778888988788888999999999999999999999999999999999999999999999999999999999887664
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.9e-05 Score=85.70 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.8
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 19 MqItVKtLdGKt~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
..|.||+ .|+.|.++ ++.++|+..||.+++..+|++|++||++++|+.|+|+-.+....|+++.+|+|+-...
T Consensus 4 ~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 4 DTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred ceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 5688998 68999987 9999999999999999999999999999999999999999999999999999997654
No 51
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.3e-05 Score=68.61 Aligned_cols=72 Identities=25% Similarity=0.329 Sum_probs=64.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
++++.+...-||+..+.+.+++||.+||+.|+..+|..++..+|---+-+++|..+|++|.|++|..+.|+.
T Consensus 1 miev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 1 MIEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred CceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 356777777799999999999999999999999999999988887666788999999999999999988864
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=7.6e-05 Score=80.15 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=61.6
Q ss_pred EEEEEEeC---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtL---dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
|.+.|... ....+.|+|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+..-+.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 45566553 124577899999999999999999999999999999999999999999999998888898883
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=7.6e-05 Score=73.17 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhccc
Q 004778 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (731)
Q Consensus 101 qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~S~ 147 (731)
+||+ .+++++++.|+++++|.++|++|| +||||+|||||||+.-.--
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe 51 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc
Confidence 4555 678899999999999999999999 9999999999999987643
No 54
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=6.1e-05 Score=70.13 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
.+|++++++|+++++|.++|++|+ ++|||+++|+|+|+.
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~ 47 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcc
Confidence 679999999999999999999999 999999999999974
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.21 E-value=0.00085 Score=58.20 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=52.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-eCCeecCcccccccccccCCCEEEEe
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---E---QQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp---e---qQRLI-F~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
.++|+|...+++.+.+.+..+.+|++|...|.+..+.+. . ..+|. -+|..|+++++|++|+|.+|+.|+|.
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 467888886578999999999999999999999887644 2 24666 67999999999999999999999873
No 56
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.01 E-value=0.0014 Score=60.28 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=51.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCccccccccccc
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQLLSAYHVE 80 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G--KvLkDdkTLsdYGIk 80 (731)
|-|.||- ...+|.++.+++.||-+||.+++....-|+++|||+.-. ++|+|.++|+|+|+.
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455665 345677899999999999999999999999999998743 688999999999764
No 57
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=96.99 E-value=7.5e-05 Score=68.45 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=53.3
Q ss_pred cccccCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 76 dYGIkdGsTIhLVlRl~ggp~ss~~qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.|.+.+-.++||+++... .|++++ ..|+.+.+.|+++++|..||.+|+ ++|||+++|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYD-----TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred ccccCCcceeEEeeccCC-----CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 356667789999999755 577666 678889999999999999999999 89999999999976
No 58
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.79 E-value=0.011 Score=51.05 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.6
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCcc--cccccccccCCCEEEEe
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLI--F~GKvLkDd--kTLsdYGIkdGsTIhLV 88 (731)
....+.|.||..+|+.+.....+++||.+|..-|..+...+... ..|+ |--+.|.++ ++|.++++....+|+|-
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 45678999999999999999999999999999999888777665 6776 566788543 69999999999998873
No 59
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00048 Score=58.46 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=38.8
Q ss_pred CCCCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhc
Q 004778 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (731)
Q Consensus 103 ~v~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (731)
++.+++.+.+.++++|.|+-+|..+. ++||||.+|||||+.-.
T Consensus 6 ktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkq 49 (70)
T KOG0005|consen 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQ 49 (70)
T ss_pred eeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccc
Confidence 34788999999999999999999999 99999999999998644
No 60
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.36 E-value=0.0071 Score=55.38 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=43.9
Q ss_pred EEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCcccccccc
Q 004778 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (731)
Q Consensus 21 ItVKtLd-GKt~tLeVd--psdTV~dLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsdY 77 (731)
|+|++.+ -..+.|+|. .+.||..||++|.++.. ..-.++||||+||.|.|...|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4555544 244667777 78999999999999983 334678999999999998877654
No 61
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.14 E-value=0.034 Score=48.26 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=58.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCc---ccccccccccCCCEEEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsdYGIkdGsTIhL 87 (731)
...+|.||..+|+.+......++||.+|.+-|....+......+|+ |--|.|.+ +++|.+.++....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4688999999999999999999999999999976666666667776 55677854 47999999988887766
No 62
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.12 E-value=0.025 Score=50.16 Aligned_cols=70 Identities=21% Similarity=0.459 Sum_probs=57.8
Q ss_pred EEEEE--EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCcccccccccccCCCEEEEe
Q 004778 19 IEIKI--KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 19 MqItV--KtLdGKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
|+|+| +.-+|++|.|++....+|..|-..+.+...+.. ...|..-++++|.++..|.+|+|.+|+.|.++
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL 81 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL 81 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence 44544 555799999999999999999999988766433 34688899999999999999999999988763
No 63
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.00074 Score=73.23 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=62.3
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCccccccccccc--CCCEEEEe
Q 004778 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVE--DGHTLHMV 88 (731)
Q Consensus 15 s~~tMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF~GKvLkDdkTLsdYGIk--dGsTIhLV 88 (731)
.+..+.++||..+. +.+.|.++.+.||.+||..++..+--.+ .+|||+|.||.|.|...|.|.-+| ..+++||+
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 34456777777664 4566778889999999999998865333 689999999999999999988554 46889999
Q ss_pred eecCCC
Q 004778 89 VRQPVP 94 (731)
Q Consensus 89 lRl~gg 94 (731)
+..+..
T Consensus 86 cnsk~v 91 (391)
T KOG4583|consen 86 CNSKEV 91 (391)
T ss_pred cCCCCC
Confidence 876543
No 64
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.07 E-value=0.00029 Score=60.04 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++++++|++++||+.+|.+|+ ++|+|+++|+|+|+
T Consensus 8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 8 QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 4567899999999999999999 99999999999986
No 65
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.011 Score=61.11 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=61.9
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCC--EEEEeeec
Q 004778 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH--TLHMVVRQ 91 (731)
Q Consensus 16 ~~tMqItVKtL-dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGs--TIhLVlRl 91 (731)
..+..++++.. .++.+.+.+...+|+.++|.++..+.++.+--|+++|.|++|.|...|.+|+|+.|. .|.+++-.
T Consensus 143 ~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 143 HTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred CCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEecc
Confidence 33344444433 467888999999999999999999999999999999999999999999999999994 44444433
No 66
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.93 E-value=0.03 Score=55.84 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=60.3
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC-Ceec--CcccccccccccCC----CEEE
Q 004778 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR-GKVL--KDDQLLSAYHVEDG----HTLH 86 (731)
Q Consensus 19 MqItVKtLdG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLIF~-GKvL--kDdkTLsdYGIkdG----sTIh 86 (731)
|+|+|++++| .++.+.+..+.||.+|+..|...++++...| .|++. ++.| .++..+..+.-.+. .+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999998874 45553 5555 56666777654433 4788
Q ss_pred EeeecCCCC
Q 004778 87 MVVRQPVPS 95 (731)
Q Consensus 87 LVlRl~ggp 95 (731)
|++++.++-
T Consensus 81 l~~rl~GGK 89 (162)
T PF13019_consen 81 LSLRLRGGK 89 (162)
T ss_pred EEEeccCCC
Confidence 888887753
No 67
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.71 E-value=0.071 Score=45.85 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=54.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCc---ccccccccccCCCEEEEe
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsdYGIkdGsTIhLV 88 (731)
+.+|.||..+|+.+......++||.+|.+-|.....- .....|+ |-.|.|.| +++|.+.|+. .+++.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4679999999999999999999999999999876543 4556676 55677854 6899999998 4555443
No 68
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.47 E-value=0.038 Score=47.46 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEE
Q 004778 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 26 LdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
.+++.+.+.|.+++++.++-++..+++++.+++-.|.|++|.|+-+.++.-.|+.+|.+|.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 47889999999999999999999999999999999999999999999999999999998875
No 69
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.021 Score=52.19 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=69.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
..|.++|-..++.++.+.|..+++...|.+..+...|-..+..|++|+|+.++-++|-.+++.++++.|..+..+-++
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 456677776688999999999999999999999999999999999999999999999999999999998887765543
No 70
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.28 E-value=0.11 Score=45.63 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=55.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecCc-ccccccccccCCCEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIP-peqQRLI--F~GKvLkD-dkTLsdYGIkdGsTI 85 (731)
...+|.||..+|+.+...+..++||.+|++-|....+-. .....|+ |-.|.|.| ++||.|.|+.+...+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 357899999999999999999999999999999875432 2456665 77888854 689999999864433
No 71
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.17 E-value=0.0014 Score=56.09 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+++.++|++++||..+|.+|+ .+|+|+++|+|+|+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 568888999999999999999999 99999999999975
No 72
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.07 E-value=0.13 Score=44.88 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=57.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCc---ccccccccccCCCEEEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsdYGIkdGsTIhL 87 (731)
...+|.||..+|+.+.-....++||.+|++-|....+.. ....|+ |--|.+.+ +++|.+.|+....+|+|
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 347899999999999999999999999999998765432 456676 55788853 48999999998888876
No 73
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.59 E-value=0.0019 Score=55.00 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.++|++++||+.+|..|+ ++|+|+++|+|+|+
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457778899999999999999999 99999999999976
No 74
>PTZ00044 ubiquitin; Provisional
Probab=94.42 E-value=0.002 Score=54.53 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+++.+.|.+++||+.+|.+|+ ..|+|+++|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 467888899999999999999999 89999999999975
No 75
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.33 E-value=0.27 Score=43.98 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecC--------cccccccccccCCCEEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLK--------DDQLLSAYHVEDGHTLH 86 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G--KvLk--------DdkTLsdYGIkdGsTIh 86 (731)
..++|.||..+|+.+.-....++||.+|..-|.. .+..++...|+++= |.|. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4689999999999999999999999999999964 45566788888654 7775 35799999999887776
Q ss_pred E
Q 004778 87 M 87 (731)
Q Consensus 87 L 87 (731)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 76
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.17 E-value=0.075 Score=56.35 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=50.8
Q ss_pred EEEEEEeCCCc-EEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEE----EeCCeecCcccccccccccCCCEEEE
Q 004778 19 IEIKIKTLDSQ-TYT-LRVDKQVPVPALKEQIASV-TGVLSEQQRL----ICRGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 19 MqItVKtLdGK-t~t-LeVdpsdTV~dLKekIaek-tGIPpeqQRL----IF~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
|+|+++...+. .++ .+.+...||.|++++|..+ .++.+.++|+ .-+||.|.|+.+|++|+..++.+|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 67888776542 333 5677889999999777555 5677754444 35699999999999999999966654
No 77
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.11 E-value=0.004 Score=52.99 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++++.+.|+++++|+.||.+|+ .+|+|+++|+|+|+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 56778899999999999999999 89999999999975
No 78
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.11 Score=53.88 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=56.7
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC--e---ec-CcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~G--K---vL-kDdkTLsdYGIkdGsTIhLVlR 90 (731)
++|+|.+..-+ ....+..+++||.+||.|++.++|.+++.++|. |+| + .| +++..|..|+..+|..||++=.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56666553222 234567789999999999999999999999885 555 2 45 4568999999999999999854
Q ss_pred cC
Q 004778 91 QP 92 (731)
Q Consensus 91 l~ 92 (731)
..
T Consensus 82 ~~ 83 (234)
T KOG3206|consen 82 NA 83 (234)
T ss_pred Cc
Confidence 43
No 79
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=93.63 E-value=0.0047 Score=52.66 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=34.7
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+++.++|+++++|..+|.+|+ +.|+|+++|+|+|+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 567888899999999999999999 89999999999965
No 80
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.54 E-value=0.53 Score=42.27 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---cccccccccccCCCEEEEee
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsdYGIkdGsTIhLVl 89 (731)
+...-+|.||..+|+.+.-....++++.+|..-|.. .+.+++...|+ |--|+|. .+.+|.+.|+....+|.|--
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 345678999999999999999999999999999988 57788889998 4567773 34899999999999988754
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.52 E-value=0.55 Score=41.60 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=60.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---cccccccccccCCCEEEEe
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsdYGIkdGsTIhLV 88 (731)
+...+|.||..+|+.+.-....++++.+|..-|..+ +.+++..+|+ |--|++. .+.+|.+.|+....+|.|-
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 456899999999999999999999999999999875 7777788887 5567774 2479999999988888774
No 82
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=92.84 E-value=0.0066 Score=51.03 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.++|+++++|+.+|.+|+ ++|+|+++|+|+|+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457788899999999999999999 89999999999876
No 83
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=92.54 E-value=0.0083 Score=52.34 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=32.3
Q ss_pred CCCCC-ccc-ccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRS-HGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~t-itl-~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+. +.+ .+.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 34554 467 4899999999999999 99999999999985
No 84
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=92.44 E-value=0.013 Score=51.02 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..+.+..+.|++++||+.+|.+|+ ++|||+++||| |.
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~ 47 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI 47 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence 456778899999999999999999 99999999999 64
No 85
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=92.24 E-value=0.011 Score=51.16 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.+++||+.||.+|+ +.|+|+++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 346777789999999999999998 77999999999987
No 86
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=91.99 E-value=0.011 Score=50.89 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
.+|+.+.++|++++||+.||.+|+ ..|||++.|+|+|..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G 44 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEG 44 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 357788899999999999999999 899999999999863
No 87
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.16 E-value=1 Score=38.32 Aligned_cols=68 Identities=26% Similarity=0.264 Sum_probs=52.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe----CC--eecCccccccccccc--CCCEEEEeee
Q 004778 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (731)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF----~G--KvLkDdkTLsdYGIk--dGsTIhLVlR 90 (731)
|+.+||...+++|+++.|+.+|=++|+++.++... -.=|.| +| .-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 67889999999999999999999999999998753 346777 22 357888999998777 3445555443
No 88
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=90.19 E-value=0.019 Score=48.09 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|+++.+|+.||.+|+ +.|+|++.|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 346777789999999999999999 88999999999975
No 89
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=89.98 E-value=0.46 Score=41.72 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.6
Q ss_pred ecCCCCHHHHHHHHHHHhCC-CCCCeEEEeCCeecCcccccccc-cccCCCEEEEeee
Q 004778 35 VDKQVPVPALKEQIASVTGV-LSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (731)
Q Consensus 35 VdpsdTV~dLKekIaektGI-PpeqQRLIF~GKvLkDdkTLsdY-GIkdGsTIhLVlR 90 (731)
|.+.++|.+||+.+...... .-....|.++|+.|+|...|+++ +++++++|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 56889999999999887553 33556889999999999999988 6899999999864
No 90
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=89.87 E-value=0.027 Score=48.67 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIf 141 (731)
.++.+.++|++++||+.||..|+ ..|+|+++|+||+
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 45677789999999999999999 8999999999997
No 91
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=89.59 E-value=0.019 Score=48.04 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.++|.++++|+.+|.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 346777899999999999999999 89999999999974
No 92
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.58 E-value=1.7 Score=37.76 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCcccccccccccCCCEEEE
Q 004778 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 18 tMqItVKtLd------G-Kt~tLeVdpsdTV~dLKekIaektG-IPp--eqQRLIF~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
+|+|+|+... | +...+++....||.+|++.+..+.. +.. ....+..+|+... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4889998873 3 4566788888999999999977641 111 1124566777654 3456789999998
Q ss_pred eeec
Q 004778 88 VVRQ 91 (731)
Q Consensus 88 VlRl 91 (731)
+-..
T Consensus 76 ~Ppv 79 (82)
T PLN02799 76 IPPI 79 (82)
T ss_pred eCCC
Confidence 7543
No 93
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.41 E-value=1.9 Score=36.56 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=43.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGI----PpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
...++++...||.+|++++..++.- ......+..+|+..+ .++-|++|+.|.++-...
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCC
Confidence 4567777789999999999887542 234567778888877 456789999999986443
No 94
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=89.32 E-value=0.022 Score=49.44 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+...++|+++.||+.+|..|+ +.|+++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346667899999999999999998 78999999999976
No 95
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.86 E-value=0.69 Score=51.42 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcc--cccccccccCCCEEEEeeecC
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd--kTLsdYGIkdGsTIhLVlRl~ 92 (731)
..+++.+.|..+.....|+..++..+++..+..-|+|++++|.++ ..|..||++++++|.+-.+..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 568888999999999999999999999999999999999999655 689999999999987765543
No 96
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=88.27 E-value=0.031 Score=47.33 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCC--CcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGI--PpdqQRLIfa 142 (731)
..|+.+.+.|.+++||..||..|+ .+|+ |+++|+|+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 456778899999999999999999 8999 9999999975
No 97
>PRK06437 hypothetical protein; Provisional
Probab=87.69 E-value=3.3 Score=35.42 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.++...++++...||.+|-++ .+++++...+..+|+.+. .++-|++|+.|.++--
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 557788888888999988755 488888888999999997 5677889999998753
No 98
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=87.66 E-value=2.6 Score=38.01 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=38.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004778 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (731)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK 66 (731)
-|+|.+- + ++.|+|.+..+..+|+++|.++.++|+++.+|.|+..
T Consensus 4 vvKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 4555553 2 8899999999999999999999999999999999864
No 99
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=87.48 E-value=4 Score=34.92 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=46.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
+|+|+|... .+...++++...||.+|.+++ +++.+...+..+|+.+. .++-|++|+.|.++--
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 356666332 235678888889999988765 67777777888999884 3666889999988753
No 100
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=87.46 E-value=2.9 Score=37.33 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=50.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCccccccc----ccccCCCEEEEe
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSA----YHVEDGHTLHMV 88 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF~GK-----vLkDdkTLsd----YGIkdGsTIhLV 88 (731)
|+|++.. ++..+.+.+.++.+..+|+++|.+++++.. ....|-|... .|..+.-|.+ |.....++|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4566666 678889999999999999999999999865 5667777652 2333333444 445556777776
Q ss_pred ee
Q 004778 89 VR 90 (731)
Q Consensus 89 lR 90 (731)
+.
T Consensus 80 v~ 81 (82)
T cd06407 80 VH 81 (82)
T ss_pred ee
Confidence 64
No 101
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=86.40 E-value=0.037 Score=45.86 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.+.++++|..||.+++ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456778899999999999999999 88999999999984
No 102
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.14 E-value=5.6 Score=38.75 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=53.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC--C----eecCccccccccccc-CCCEEEEe
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF~--G----KvLkDdkTLsdYGIk-dGsTIhLV 88 (731)
..+.|.|..++|.+..+.+++.+|+.+|.+.|+++.|+.... .-|.+. . ..|+..++|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 357889999999999999999999999999999999995422 234432 1 345666777766554 33455555
Q ss_pred eec
Q 004778 89 VRQ 91 (731)
Q Consensus 89 lRl 91 (731)
+|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 443
No 103
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=85.70 E-value=3.4 Score=35.35 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=40.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK 66 (731)
++|+|+. ++..+.+.+....+..+|+.+|.+++++.....+|-|...
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 5677777 6788899999999999999999999998877888888753
No 104
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=85.40 E-value=0.079 Score=43.99 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.3
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.+.|.++.+|+.||.+|+ ..|+|++.|+|+|.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 5566788999999999999999 89999999999975
No 105
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.39 E-value=4.5 Score=33.82 Aligned_cols=62 Identities=6% Similarity=0.236 Sum_probs=43.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
|+|+| +|+.+.+ + ..||.+|.+.+ ++..+...+-++++.+. .....++-|++||.|.++--.
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 44544 6777776 3 46899888765 56666666778888876 334556778999999987543
No 106
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=85.20 E-value=0.084 Score=45.80 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=32.6
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHH--HH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI--VS 141 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRL--If 141 (731)
..|+.+.+.|+++.||..||..|+ +.|+|+++||| +|
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~ 49 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD 49 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc
Confidence 446777789999999999999998 88999999999 65
No 107
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=85.09 E-value=0.27 Score=53.53 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCcc
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDD 71 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVd---p--sdTV~dLKekIae----------ktGIPpeqQR-----LIF~GKvLkDd 71 (731)
.......|.|++|.+-.-.+.|.+. + +.+|.+||..++. ++++|.+..+ |+|+-|.+-|.
T Consensus 72 aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ 151 (309)
T PF12754_consen 72 APGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCc
Confidence 4455677999999886666555332 3 6899999999999 8999999988 99999999999
Q ss_pred cccccccc
Q 004778 72 QLLSAYHV 79 (731)
Q Consensus 72 kTLsdYGI 79 (731)
++|.+..-
T Consensus 152 ktl~e~l~ 159 (309)
T PF12754_consen 152 KTLAEVLA 159 (309)
T ss_dssp --------
T ss_pred CcHHHHHh
Confidence 99988743
No 108
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=83.90 E-value=4.7 Score=36.94 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=45.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C-eecC-cccccccccccCCCEEEEeeecCCC
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G-KVLK-DDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~----G-KvLk-DdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
..++..+...+||..+++.+.+.+.| .++-||--. + ..|. .+.||.+.+|.+|-+|.+-.|...+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 36677899999999999999999999 677887532 2 3464 4579999999999999888876543
No 109
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=83.00 E-value=0.14 Score=45.39 Aligned_cols=41 Identities=5% Similarity=-0.080 Sum_probs=36.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhc
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (731)
..|+.+.+.|.+++++..||..++ +.|++++++||+|+.-.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~ 60 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQR 60 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeE
Confidence 457778899999999999999999 99999999999997543
No 110
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=80.66 E-value=0.076 Score=43.96 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.++.+|..+|..|. ..|+|++.|+|+|.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 356778899999999999999999 88999999999985
No 111
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=80.46 E-value=4.3 Score=36.97 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=39.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEEEeC
Q 004778 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRLICR 64 (731)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe---qQRLIF~ 64 (731)
.+++|...|+++.+.+.++..+.+|++.|.++.|+... ...|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 46788889999999999999999999999999998873 5566664
No 112
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=79.97 E-value=8.8 Score=33.55 Aligned_cols=60 Identities=8% Similarity=0.131 Sum_probs=41.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----C------CCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTGV-----L------SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGI-----P------peqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
....+++. ..||.+|++.+.+++.- - .....+..+|+..+++.. +-|++|+.|.++-...
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppvs 86 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVS 86 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCc
Confidence 34667776 89999999999887531 0 123566778887765432 5689999999885443
No 113
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=79.51 E-value=0.14 Score=43.20 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=29.6
Q ss_pred cccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 110 itl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..+.++++.||..||..|+ +.|+++++|+|+|+
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 3688999999999999998 88999999999874
No 114
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=79.46 E-value=0.2 Score=44.33 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.1
Q ss_pred cCCcccccccccc-C--CCCC-cchhHHHHHhh
Q 004778 116 PSVVIETFNLPDR-G--DGVP-SEISQIVSAVL 144 (731)
Q Consensus 116 psdTVesVK~~Iq-~--EGIP-pdqQRLIfavl 144 (731)
.++||+.||.+|+ + +|++ +++|||||+.-
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GK 51 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGR 51 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCc
Confidence 4689999999999 5 6785 99999998643
No 115
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=79.16 E-value=4.3 Score=37.17 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.+...++-..++..||+.++.+.++..+.-.++..+..|+++++|-+-||+-.-++.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 345677889999999999999999999999999999889999999999999888888877643
No 116
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=79.14 E-value=13 Score=32.10 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=41.4
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 30 TYTLRVDKQ-VPVPALKEQIASVTG-VL--SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 30 t~tLeVdps-dTV~dLKekIaektG-IP--peqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
...+++... .||.+|++.+.+++. +- ....++..+++.+.+ +.-|++|+.|.++-...
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 346788876 899999999988864 11 123456677777664 56788999999885443
No 117
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=78.72 E-value=4.6 Score=34.28 Aligned_cols=56 Identities=14% Similarity=0.356 Sum_probs=40.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
|+|+| +|+. +++....|+.+||.++.... =.+||+|=..+++.. +++||.|.|+.|
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~-----L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDA------DIVILNGFPTKEDIE-----LKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccc-----cCCCCEEEEEeC
Confidence 45555 3444 56778899999999876533 268999988877644 567898888764
No 118
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=78.32 E-value=9.5 Score=34.84 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=38.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK 66 (731)
.|+|+|.. .|..+.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46777766 67899999999999999999999999985 5556666654
No 119
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=75.77 E-value=8.5 Score=33.85 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEE-eCCeecCcccccccccccCCCEEEEeeec
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektG---IPpeqQRLI-F~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+|+...++.+.+..+--+.++-.+..+ -|++...|- -.|.+|+-++.+.|||+.++-+|+|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 677788888888887777776665544 677766665 35889999999999999999999998874
No 120
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=75.04 E-value=0.33 Score=43.21 Aligned_cols=38 Identities=0% Similarity=-0.129 Sum_probs=28.5
Q ss_pred CCCC--cccccccCCcccccccccc-C-C-CCCcchhHHHHHh
Q 004778 106 TSRS--HGSHVAPSVVIETFNLPDR-G-D-GVPSEISQIVSAV 143 (731)
Q Consensus 106 tG~t--itl~V~psdTVesVK~~Iq-~-E-GIPpdqQRLIfav 143 (731)
.++. +.+++++++||..+|.+|. . . ..++++|||||+.
T Consensus 10 ~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~G 52 (79)
T cd01790 10 NQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSG 52 (79)
T ss_pred CCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcC
Confidence 3444 4456689999999999998 2 2 3557999999863
No 121
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=74.97 E-value=0.45 Score=44.57 Aligned_cols=35 Identities=6% Similarity=-0.041 Sum_probs=31.9
Q ss_pred CcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
...+.|.+++||+++|..|+ +.+++|+.|+|++..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG 51 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDG 51 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecC
Confidence 45688999999999999999 999999999999983
No 122
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=74.90 E-value=10 Score=32.41 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.3
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 18 tMqItVKtLdGKt~t-LeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
++.|+++.- +..+. +.+....+..+|+.+|.++++.+....+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467788774 45555 899999999999999999999998888998874
No 123
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.83 E-value=0.34 Score=54.10 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCcccccccccc-CCC---CCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EG---IPpdqQRLIfav 143 (731)
..++.+.+.|++++||..||.+|+ +.| +|+++|+|||..
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G 50 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSG 50 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECC
Confidence 457778899999999999999998 666 999999999984
No 124
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=74.02 E-value=12 Score=31.83 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.7
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 20 qItVKtLdGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
.|+++. +|..+.+.+. ...+..+|+.+|.+++++.....+|.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 466666 3677888888 99999999999999999887677777765
No 125
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=72.97 E-value=14 Score=33.73 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=48.4
Q ss_pred EEEEEeCCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCcccccccc-----cccCCC
Q 004778 20 EIKIKTLDSQTYTLRVD-----KQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (731)
Q Consensus 20 qItVKtLdGKt~tLeVd-----psdTV~dLKekIaektGIPp-eqQRLIF~GK-----vLkDdkTLsdY-----GIkdGs 83 (731)
.|+|+. ++....|.+. ++.+..+|+++|.+.++++. ....|.|... .|.++.-|.++ .-....
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 466666 5666667776 47999999999999999988 5667778653 24444333332 233577
Q ss_pred EEEEeeec
Q 004778 84 TLHMVVRQ 91 (731)
Q Consensus 84 TIhLVlRl 91 (731)
+|.|.++.
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 88877754
No 126
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=72.81 E-value=14 Score=31.02 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGI--PpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
...+.+....||.+|.+++..++.- ..+...+..+|+.+.+ ...++-+++|+.|.++--..|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 5677888999999999999877531 2366788899999888 366788899999999865433
No 127
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=72.37 E-value=16 Score=41.91 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=58.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC----C--CCCeEEE-eCCeecCcccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV----L--SEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGI----P--peqQRLI-F~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.+|+|... .+..++-+..+..|.+|-..|-+..+- + ...-.|. .+|..|+.+++|.+.+|.||++++|.-+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 57788774 466788888999999999999887753 1 1223443 45789999999999999999999998755
Q ss_pred CCCC
Q 004778 92 PVPS 95 (731)
Q Consensus 92 ~ggp 95 (731)
...+
T Consensus 82 ~~~p 85 (452)
T TIGR02958 82 ATEP 85 (452)
T ss_pred CCCC
Confidence 4433
No 128
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=72.31 E-value=7.6 Score=40.92 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------eecCccccccccccc
Q 004778 13 ESSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KVLKDDQLLSAYHVE 80 (731)
Q Consensus 13 e~s~~tMqItVKtLdG--Kt~t----LeVdpsdTV~dLKekIaektGIPpeqQRLIF~G------KvLkDdkTLsdYGIk 80 (731)
......+-|++|..|- +++. +-|+.+.+|.+|-..|.++.|+|++.--++|.- ..|+...++..+.|.
T Consensus 63 ~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~ 142 (249)
T PF12436_consen 63 YDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQ 142 (249)
T ss_dssp --TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--
T ss_pred CCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccC
Confidence 3445679999998763 3432 578999999999999999999999877777653 357888999999999
Q ss_pred CCCEEEEeeecC
Q 004778 81 DGHTLHMVVRQP 92 (731)
Q Consensus 81 dGsTIhLVlRl~ 92 (731)
+|+.|.+-....
T Consensus 143 ~GdIi~fQ~~~~ 154 (249)
T PF12436_consen 143 DGDIICFQRAPS 154 (249)
T ss_dssp TTEEEEEEE--G
T ss_pred CCCEEEEEeccc
Confidence 999998877543
No 129
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=72.26 E-value=24 Score=31.78 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=47.1
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
....+|+|+| +|+.+.+ +...||.+|-+. .++++...-+-++|+.+ ......++-|++||.|.++--.
T Consensus 14 ~~~~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 14 AAMVLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred CCCceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEEEe
Confidence 3344555555 6676655 567788877664 46777777788999888 3345667779999999987543
No 130
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=71.76 E-value=6.4 Score=44.34 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEE--eCCeecCc-ccccccccccCCCEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLI--F~GKvLkD-dkTLsdYGIkdGsTI 85 (731)
.+-.|.||..+|+-+.+.++..-||.+|+..|.....-.. ..+.|+ |--|.|.| +.||++.||.+-..|
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 4456788888999999999999999999999988765443 345555 45688855 589999999775543
No 131
>smart00455 RBD Raf-like Ras-binding domain.
Probab=71.58 E-value=10 Score=32.88 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
+.|-..+|+...+.+.+..||.++-+++.++.|+.++...|++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678999999999999999999999999999999998888855
No 132
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=71.06 E-value=18 Score=30.53 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+|+.+.+ ....||.+|-+. .+++.+..-+.++++.+..+.- ..+ +++||.|.++--.
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~V 62 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAV 62 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeec
Confidence 5676655 456787776654 5888888899999998854322 236 9999999987543
No 133
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=69.92 E-value=25 Score=32.72 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=53.1
Q ss_pred CcEEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCe--ecCcccccccc-----cccC
Q 004778 17 TTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGK--VLKDDQLLSAY-----HVED 81 (731)
Q Consensus 17 ~tMqItVKtLd-GKt~tLeVdpsdTV~dLKekIaekt----G--IPpe-qQRLIF~GK--vLkDdkTLsdY-----GIkd 81 (731)
..+.|.|...+ ...+++.|++++++.+|.+.+..+. + -+.+ +-.|--.|+ -|..+..|.+| +++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 46777777654 3568999999999999998887761 1 2222 456666675 36677777776 4678
Q ss_pred CCEEEEeeec
Q 004778 82 GHTLHMVVRQ 91 (731)
Q Consensus 82 GsTIhLVlRl 91 (731)
+..+||++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8888888764
No 134
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=69.53 E-value=32 Score=28.99 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=42.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
|+|+| +|+.+.+ ....||.+|.+. .++......+-.+++.+.. ....++-|++||.|.++--.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEc
Confidence 44554 5676665 567889988865 3555566777888888742 23445568899999987543
No 135
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=7.3 Score=43.34 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=46.0
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---Cee-----cCcccccccccccCCCEEEEe
Q 004778 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKV-----LKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIF~---GKv-----LkDdkTLsdYGIkdGsTIhLV 88 (731)
.-|+-.-||.+||+++..+.|+.+.++||+|- ||. .+-++.|-.|+|++|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 45667889999999999999999999999874 443 234578999999999988764
No 136
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=69.09 E-value=0.34 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 108 ~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+...+.|.++.+|+.||.+|+ ..|+|++.|+|+|.
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 345678899999999999999 89999999999865
No 137
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=68.84 E-value=29 Score=28.87 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+.-.. ..++-+++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHAL 63 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEe
Confidence 56755 45567888877654 578888888889998775442 345558999999987543
No 138
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=68.60 E-value=12 Score=32.93 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=40.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
+.|...+|+.-.+.|.+.+||.++-+++.++.++.++.-.|++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467778999999999999999999999999999999888777664
No 139
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=66.95 E-value=32 Score=31.42 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=50.4
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEeCCe--ecCcccccccc-----cccC
Q 004778 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLSE----QQRLICRGK--VLKDDQLLSAY-----HVED 81 (731)
Q Consensus 16 ~~tMqItVKtL-dGKt~tLeVdpsdTV~dLKekIaek--tGIPpe----qQRLIF~GK--vLkDdkTLsdY-----GIkd 81 (731)
...+.|.|... +...++|.|+.+.|+.+|.+++..+ ...... +-.|--.|+ -|..+..|.+| +++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 45688888887 4567899999999999999888776 222222 456666674 46678888888 3677
Q ss_pred CCEEEEeee
Q 004778 82 GHTLHMVVR 90 (731)
Q Consensus 82 GsTIhLVlR 90 (731)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 778888764
No 140
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=65.83 E-value=9.1 Score=37.06 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=42.5
Q ss_pred EecC-CCCHHHHHHHHHHHh----CCCC------CCeEEEeCC-----------------eec---CcccccccccccCC
Q 004778 34 RVDK-QVPVPALKEQIASVT----GVLS------EQQRLICRG-----------------KVL---KDDQLLSAYHVEDG 82 (731)
Q Consensus 34 eVdp-sdTV~dLKekIaekt----GIPp------eqQRLIF~G-----------------KvL---kDdkTLsdYGIkdG 82 (731)
.|+. +.||.+||+.|.+.. +++| +..||++.- ..| +++++|.+|||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4886 999999999887753 4444 556776542 355 67788999999999
Q ss_pred CEEEEeee
Q 004778 83 HTLHMVVR 90 (731)
Q Consensus 83 sTIhLVlR 90 (731)
..|-+..+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 98888765
No 141
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=63.11 E-value=26 Score=29.27 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
+|+.+. ++...||.+|.+++ +++.+...+.++|+.+..+ ...++-|++||.|.++--..
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~ 63 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVG 63 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 455554 45678999988775 4677888888999887543 23445689999999876443
No 142
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=62.73 E-value=48 Score=28.77 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=28.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE
Q 004778 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI 62 (731)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIP--peqQRLI 62 (731)
+...+|.|..++|..+|-+.+.+|+++. ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667899999999999999999999988 3444454
No 143
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=61.45 E-value=49 Score=30.35 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE------eCCeecCcccccccc
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI------CRGKVLKDDQLLSAY 77 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLI------F~GKvLkDdkTLsdY 77 (731)
.-|+|...||....|.|+..+|+.++-+++..|..+..+.- -|+ +=.+.|+|+..|-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 45677778999999999999999999999999988766543 332 124677888665443
No 144
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=60.48 E-value=33 Score=29.73 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=39.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCcc
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDD 71 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G--KvLkDd 71 (731)
+.|...+++...+.|.+.+||.++-.++.++.++.++...++..| |.|+.+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 567778999999999999999999999999999999988776554 445433
No 145
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=58.37 E-value=69 Score=37.15 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCc---ccccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL--IF~GKvLkD---dkTLsdYGIkdGsTIhLVlR 90 (731)
.+..+|.|+..||..|+-.+..++-+..+|..|...-.+.....-| .|--|+..| +++|.++.+.+...|.|+-+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 3568999999999999988888888899999999888877766655 466777733 38999999998888877766
Q ss_pred cCC
Q 004778 91 QPV 93 (731)
Q Consensus 91 l~g 93 (731)
...
T Consensus 392 ~r~ 394 (506)
T KOG2507|consen 392 KRA 394 (506)
T ss_pred CCc
Confidence 544
No 146
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=58.35 E-value=52 Score=27.18 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
+|+.+. +....||.+|.+.+ ++. ....+.++|+.+.... ..+.-+++||.|.++--..
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVA 63 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeecc
Confidence 556554 45678999888765 333 3456778888764322 3344488999999986443
No 147
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=57.72 E-value=1.2 Score=42.43 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=27.1
Q ss_pred cccccCCcccccccccc------CCCCC--cchhHHHHHh
Q 004778 112 SHVAPSVVIETFNLPDR------GDGVP--SEISQIVSAV 143 (731)
Q Consensus 112 l~V~psdTVesVK~~Iq------~EGIP--pdqQRLIfav 143 (731)
..+.+++||..+|.+|+ ++|+| +++|+|||+.
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysG 59 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAG 59 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCC
Confidence 56789999999999997 35677 9999999974
No 148
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=57.25 E-value=45 Score=27.86 Aligned_cols=59 Identities=12% Similarity=0.274 Sum_probs=41.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
+|+.+.+ ....||.+|.+++ +++++...+.++|+.+..+ ...++-|++||.|.++--..
T Consensus 4 Ng~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 4 NGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred CCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 5666554 5677899988764 5667777788899887432 23456789999999876443
No 149
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=56.61 E-value=26 Score=41.42 Aligned_cols=76 Identities=24% Similarity=0.412 Sum_probs=47.6
Q ss_pred CcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe--C--Ce-ecCcc----------
Q 004778 17 TTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC--R--GK-VLKDD---------- 71 (731)
Q Consensus 17 ~tMqItVKtLd--GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF--~--GK-vLkDd---------- 71 (731)
.+|.|+|-..+ ...+.+.|-..+||.++|+||-+.. +.| +++.-|.+ + |+ .|+|.
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 45677755433 3457889999999999999997652 222 23444432 2 23 44432
Q ss_pred ---cccccccccCCCEEEEeeecC
Q 004778 72 ---QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 72 ---kTLsdYGIkdGsTIhLVlRl~ 92 (731)
.||..|+|.+|++|-|+.+..
T Consensus 268 krLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 268 KRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EE--BHHHHT--TTEEEEEEES--
T ss_pred eEeccHhhcCCCCCceEEEeeccc
Confidence 368999999999999999874
No 150
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=53.73 E-value=70 Score=27.46 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=39.2
Q ss_pred EEEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE-e---CC--eecCcc-cccc
Q 004778 20 EIKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLI-C---RG--KVLKDD-QLLS 75 (731)
Q Consensus 20 qItVKtLdGK----t~tLeVdpsdTV~dLKekIaektGI--PpeqQRLI-F---~G--KvLkDd-kTLs 75 (731)
-|+|-..++. ..+|.|..++|+.+|-+++.+++++ .+....|+ + .| +.|.|+ ..|.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~ 72 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQ 72 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHH
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHH
Confidence 4555556666 7789999999999999999999998 23445563 2 23 567655 4443
No 151
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=53.24 E-value=38 Score=30.70 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=30.8
Q ss_pred EEEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdp--sdTV~dLKekIaektGIP 55 (731)
++|++.. +|.++.+.+++ +.+..+|+++|...++++
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3566666 67888899988 779999999999999998
No 152
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=53.07 E-value=37 Score=30.67 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=33.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
++.|.|.+..+..+|..+|.+|...+++.-+|.|+-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 566789999999999999999999999999999974
No 153
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=52.79 E-value=39 Score=31.33 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.6
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004778 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (731)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF 63 (731)
++...|.+..+.|+.+.+..+|+.++.+.+++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 67788999999999999999999999999998875 55544
No 154
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=50.96 E-value=27 Score=42.38 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvL 68 (731)
+...+.+-++++.|+..|++.|.+.+|||.+.|-|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 456778899999999999999999999999999999997644
No 155
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.90 E-value=5.6 Score=45.76 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 32 tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.+++....|=.+|..+|++++||+....|.|.+||+|.-.+||.+-|++....+.+++.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 35666778888999999999999999999999999999999999999987776666554
No 156
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=50.02 E-value=54 Score=36.59 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=48.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
|+|+| +|+.+. +....||.+|-++ .+++.+...+.++|+.+.- ....++-|++||.|.++--..|++
T Consensus 1 M~I~V---NGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 1 MRIRL---NGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred CEEEE---CCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCC
Confidence 44444 567654 4567788877654 5888888899999998843 345567799999999998776654
No 157
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=49.93 E-value=1.7 Score=34.36 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIf 141 (731)
..++.+.+.+.++++|..+|.+|. +.|+++++|+|.+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 456778899999999999999999 8899999999555
No 158
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=48.38 E-value=1.4e+02 Score=26.02 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=32.9
Q ss_pred EEecC-CCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 33 LRVDK-QVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 33 LeVdp-sdTV~dLKekIaektG-----IPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
++++. ..||.+|++.+.+++. ......++..+++... .++-|++|+.|-++-..
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PPV 78 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPV 78 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCCC
Confidence 44443 4799999999988752 1112234444554322 24568899999887543
No 159
>PRK07440 hypothetical protein; Provisional
Probab=48.28 E-value=1.2e+02 Score=26.24 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=44.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.|+|+| +|+.+ ++....||.+|-+ ..+++++..-+.++|+.+.-+ ...++-+++||.|.++--.
T Consensus 4 ~m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 4 PITLQV---NGETR--TCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ceEEEE---CCEEE--EcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 466666 56654 4566788888765 356777777888899887532 3445668899999887543
No 160
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=44.04 E-value=1.3e+02 Score=25.66 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 27 dGKt~tLeVdps-dTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+|+.+.+ ... .||.+|-+. .++++...-+.++++.+.-+ ...++-|++||.|.++--.
T Consensus 6 NG~~~~~--~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEEEc--CCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 6676654 444 577776653 57777777788999887533 3445668999999987543
No 161
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=44.02 E-value=24 Score=33.09 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=23.8
Q ss_pred EEEeCCeecCcccccccccc-cCCCEEEEeeecCCC
Q 004778 60 RLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQPVP 94 (731)
Q Consensus 60 RLIF~GKvLkDdkTLsdYGI-kdGsTIhLVlRl~gg 94 (731)
.|-|.||.|.++++|++|-= .+...|.+-+...+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 47899999999999999922 233444444444443
No 162
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=42.37 E-value=75 Score=29.01 Aligned_cols=58 Identities=34% Similarity=0.477 Sum_probs=36.9
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCcc---ccc--ccccccCCCEEEEeeecC
Q 004778 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL--SAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIF~-GK------vLkDd---kTL--sdYGIkdGsTIhLVlRl~ 92 (731)
++++...||.+|-+.|.+++ +..+-+|+.. |+ +|-++ +.| .+|-+++|+.|.++-...
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCC
Confidence 34446679999999998876 3344455543 32 23233 234 468899999999986443
No 163
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=42.29 E-value=11 Score=41.47 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.9
Q ss_pred eCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCccccc
Q 004778 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (731)
Q Consensus 25 tLdGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTL 74 (731)
..+|.++.+.+. ....|..||.+|....+|+++.|++.|.|..|+|...+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 446788887777 78899999999999999999999999999999998544
No 164
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.10 E-value=91 Score=34.24 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=54.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC-cc--cccccccccCCCEEEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK-DD--QLLSAYHVEDGHTLHM 87 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk-Dd--kTLsdYGIkdGsTIhL 87 (731)
....|.||..||+++...+....++..|...|.-+.+...+--.|. |--+.+. |+ ++|..+++..-.+|.|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 5688999999999999999999999999999999988665433333 3345553 32 7888888877666654
No 165
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=40.74 E-value=2.3 Score=34.35 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=30.3
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+++.....+.++.+|+.||..|. ..|+|++.|+|+|.
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA 43 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 35556677888999999999999 78999999988553
No 166
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.08 E-value=87 Score=32.36 Aligned_cols=104 Identities=22% Similarity=0.179 Sum_probs=49.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EeCCe---ecCcccccccccccCCCEEEEeeecCCC--CC-C
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRL--ICRGK---VLKDDQLLSAYHVEDGHTLHMVVRQPVP--SS-S 97 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpe---qQRL--IF~GK---vLkDdkTLsdYGIkdGsTIhLVlRl~gg--p~-s 97 (731)
+.+.+-|.++.||.+|.+++..+.+++.+ ..|| ++++| .+..+..|... .+..++.+-.-.... .. .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35778999999999999999999998765 4455 35675 45667777665 332332221100000 00 0
Q ss_pred --CCCCCCC-----C----CCCCcccccccCCcccccccccc-CCCCCc
Q 004778 98 --DGTHNLP-----G----TSRSHGSHVAPSVVIETFNLPDR-GDGVPS 134 (731)
Q Consensus 98 --s~~qI~v-----~----tG~titl~V~psdTVesVK~~Iq-~EGIPp 134 (731)
...-+.+ . -|-.+.+.|.++.++..+|..|+ +.|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 0000111 1 12223467889999999999998 777755
No 167
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=38.44 E-value=74 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004778 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (731)
Q Consensus 21 ItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp 56 (731)
|+|-..+|.+..|.|....+-.++|.++-+|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566777999999999999999999999999999887
No 168
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=38.34 E-value=85 Score=28.00 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=39.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEe------CCeecCcccccccccccCCCEEEEeeec
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-IPpeqQRLIF------~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
++|-+-.+++.||.+|+..|.+++. +.|....|.. .|.-|+.+-.+.+. +..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4555568899999999999999875 4444433321 13334444444443 3468888888763
No 169
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=38.23 E-value=94 Score=28.08 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=41.1
Q ss_pred EEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCcccccccccccCCCEEEEeee
Q 004778 21 IKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 21 ItVKtLdG-Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
++|+..+. +.+-|-+ .++.+|+.|..++++++.+..+|+. .|-.++|+.-+.. + +..|+.|++.
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~ 71 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEE
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEEC
Confidence 45555442 3344544 6899999999999999977777765 5777776644332 2 3456656554
No 170
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=37.28 E-value=71 Score=37.88 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=57.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE--eC----CeecCcccc----cccccccCCCEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI--CR----GKVLKDDQL----LSAYHVEDGHTL 85 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLI--F~----GKvLkDdkT----LsdYGIkdGsTI 85 (731)
..+-|+|-+.||....|.|+..+|+.++-+.+.+|..+..+.= -|+ |. -|.++|+.. |.++.+..+..|
T Consensus 187 rklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~ 266 (622)
T KOG3751|consen 187 RKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKL 266 (622)
T ss_pred cceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCcee
Confidence 4456777777899999999999999999999999987655433 332 21 267788854 677788888888
Q ss_pred EEeeecCC
Q 004778 86 HMVVRQPV 93 (731)
Q Consensus 86 hLVlRl~g 93 (731)
.+..+..+
T Consensus 267 lF~k~~~K 274 (622)
T KOG3751|consen 267 LFRKNPAK 274 (622)
T ss_pred EEeecchh
Confidence 88766543
No 171
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=36.64 E-value=1e+02 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=40.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCeecCcccccccccccCCCEEEEeee
Q 004778 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
++.+.+.++...||+++-+ ..|||..+..++ .+|+...= +|-+++|+.|.++-.
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEec
Confidence 3567788899999988765 489999888665 57876543 477889999988743
No 172
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=36.27 E-value=1.2e+02 Score=29.29 Aligned_cols=51 Identities=2% Similarity=0.173 Sum_probs=40.2
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee
Q 004778 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV 67 (731)
Q Consensus 17 ~tMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKv 67 (731)
..+.|.+|-..+ |.-.+.|++++|++.+-..|.+..+++..++-++|=..-
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 556777776543 445678999999999999999999999988877765543
No 173
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=35.55 E-value=47 Score=29.97 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=30.1
Q ss_pred EEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCcccccccccccCCCEEEEe
Q 004778 33 LRVD-KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 33 LeVd-psdTV~dLKekIae-ktGIPpe----qQRLIF~GKv----LkDdkTLsdYGIkdGsTIhLV 88 (731)
+.++ ..+|+.+|-++|.+ +.|+... .-+++|.... -..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 4444 46899999988754 5554432 2344554322 123589999999999988764
No 174
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=34.45 E-value=9.8 Score=44.12 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.7
Q ss_pred cccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 110 itl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
+.+.|..+.+|..||.+|. .-++++|+++|||+.
T Consensus 27 ~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaG 61 (493)
T KOG0010|consen 27 YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAG 61 (493)
T ss_pred eeEecccchHHHHHHHHHHHhcCCChhHeeeeecC
Confidence 4578899999999999999 789999999999985
No 175
>PRK01777 hypothetical protein; Validated
Probab=33.14 E-value=2.2e+02 Score=26.40 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=44.1
Q ss_pred cEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCcccccccccccCCCEEEE
Q 004778 18 TIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 18 tMqItVKtLd-G--Kt~tLeVdpsdTV~dLKekIaektGIPpe--q-----QRLIF~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
+|+|.|.... . +.+.+++....||.++-+.. ||+.+ + -++...||..+- ++-+++||.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEE
Confidence 6788877643 2 23567888999999877654 55544 2 355566766543 456788999999
Q ss_pred eeecC
Q 004778 88 VVRQP 92 (731)
Q Consensus 88 VlRl~ 92 (731)
+-.+.
T Consensus 74 yrPL~ 78 (95)
T PRK01777 74 YRPLL 78 (95)
T ss_pred ecCCC
Confidence 86543
No 176
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=32.81 E-value=70 Score=32.29 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=36.2
Q ss_pred cEEEEEEeCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccc
Q 004778 18 TIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdY 77 (731)
.|.++|+. -.+.++++. .+.+..+++...+.+.++.+ +..|+-++...|+.||
T Consensus 67 ~veL~V~v---Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTVKV---GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEE---eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 46666666 345567776 66777777666665543322 3469999999999998
No 177
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=32.48 E-value=85 Score=29.01 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=36.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR 60 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQR 60 (731)
++|.|-..+|..+.++|..+++..++-+.+..+.++|.+-.+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 467777788999999999999999999999999999976553
No 178
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=30.80 E-value=58 Score=36.71 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=51.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH-hCCCCCCeEEEeCC---eecC--cccccccccccCCCE
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV-TGVLSEQQRLICRG---KVLK--DDQLLSAYHVEDGHT 84 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaek-tGIPpeqQRLIF~G---KvLk--DdkTLsdYGIkdGsT 84 (731)
-.|.||+.||+.....+-+.++|..|-..+... .|.+-+..+|+++= |.|. .+.||.++||.+-.+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 349999999988777778899999888777655 45666788999886 6664 468999999988765
No 179
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=4.1e+02 Score=25.19 Aligned_cols=76 Identities=25% Similarity=0.282 Sum_probs=46.5
Q ss_pred CcEEEEEEeCCCc--------EEE--EEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-C--ccccc--
Q 004778 17 TTIEIKIKTLDSQ--------TYT--LRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-K--DDQLL-- 74 (731)
Q Consensus 17 ~tMqItVKtLdGK--------t~t--LeVd-psdTV~dLKekIaektGIPpeqQRLIF~GK------vL-k--DdkTL-- 74 (731)
+.|.|+|+.+.|- ... ++|. ...||.+|-.-|..+.--.+++ -++..|. +| . |-..|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 4578888887542 222 3332 4578998888887765333333 4455553 23 2 22344
Q ss_pred ccccccCCCEEEEeeecCC
Q 004778 75 SAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 75 sdYGIkdGsTIhLVlRl~g 93 (731)
.+|.+++|+.|.++-.+.+
T Consensus 82 edy~ledgD~ivfiSTlHG 100 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLHG 100 (101)
T ss_pred cccCcccCCEEEEEEeccC
Confidence 4799999999988866544
No 180
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.30 E-value=1.4e+02 Score=27.51 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=36.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC
Q 004778 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR 64 (731)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~ 64 (731)
+.+||. +|.+..+.+...-+-..|++||+..+.+|.+..-|.|=
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 467776 57777788888889999999999999999877766664
No 181
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=29.64 E-value=82 Score=31.70 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=36.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccc
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdY 77 (731)
.|.++|+. -.+.+++...+.+.++++...+.+-++-+ +..|+-+++..|+.||
T Consensus 66 ~veL~V~V---GrI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 66 DVELRVQV---GRIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEE---eEEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 36666666 24456666677777777766666544322 4568899999999998
No 182
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=29.49 E-value=1.5e+02 Score=26.70 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=38.1
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 23 VKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
|-..||+.-.+.+.+.+||.++-.++.++.|+.++.-.+++-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4467889999999999999999999999999999888777666
No 183
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=27.68 E-value=3.6e+02 Score=23.63 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=42.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
|+|.+. |+.+ +++...|+.+|-++ .+++.+..-+.++|..+.... ..++-+++||.|.++--
T Consensus 3 m~i~~n---g~~~--e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 3 MTIQLN---GKEV--EIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVRV 64 (68)
T ss_pred EEEEEC---CEEE--EcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEEe
Confidence 444443 5554 45556899888754 678888888889998875432 34566788898887753
No 184
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=26.65 E-value=13 Score=41.42 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=34.7
Q ss_pred CCCCCCCcccccccCCcccccccccc-CCC--CCcchhHHHHHh
Q 004778 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSAV 143 (731)
Q Consensus 103 ~v~tG~titl~V~psdTVesVK~~Iq-~EG--IPpdqQRLIfav 143 (731)
++..+..+++.|.++++|..+|.+|. -.| .|..+|.|||+.
T Consensus 6 KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G 49 (340)
T KOG0011|consen 6 KTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG 49 (340)
T ss_pred eeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc
Confidence 33556778899999999999999998 444 999999999985
No 185
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=25.81 E-value=1.7e+02 Score=26.32 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCcccccccccccCCCEEEEeee
Q 004778 38 QVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 38 sdTV~dLKekIaektGIPpeqQRLI--F~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
-.+..+|+.|..++++++....+|+ -.|-.++|+.-+.. +. ..|+.|++.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp-~nt~l~~L~ 69 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LP-DNTELMALE 69 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CC-CCcEEEEEc
Confidence 3589999999999999997666654 46888877754433 33 345555543
No 186
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=25.66 E-value=2.3e+02 Score=25.99 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004778 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (731)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GKv 67 (731)
...+.|.|++..|=.++|+.|+..+++.+...+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 478999999999999999999999999997764 5566654
No 187
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=25.09 E-value=1.1e+02 Score=29.81 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCccccccc
Q 004778 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSA 76 (731)
Q Consensus 16 ~~tMqItVKtLd---GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsd 76 (731)
++.|-|.|.-.. .|...+-|..+.||.+|...|.++.++.+++.-|+.++.++..+.++.+
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 344555554322 2333346999999999999999999999998656666666666667765
No 188
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=24.93 E-value=1.6e+02 Score=31.26 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=33.5
Q ss_pred cEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004778 18 TIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (731)
Q Consensus 18 tMqItVKtLd---GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI 62 (731)
.+.|+++... ...|.++++..+|-.+|-++|+++.++.|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 3666766643 34799999999999999999999999999999986
No 189
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=24.22 E-value=1.5e+02 Score=32.77 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=45.7
Q ss_pred EEEecCCCCHHHHHHHHHHHh--------------C-CCCCCeEEEeCCeecCcccccccc---cccCCCEEEEeeecC
Q 004778 32 TLRVDKQVPVPALKEQIASVT--------------G-VLSEQQRLICRGKVLKDDQLLSAY---HVEDGHTLHMVVRQP 92 (731)
Q Consensus 32 tLeVdpsdTV~dLKekIaekt--------------G-IPpeqQRLIF~GKvLkDdkTLsdY---GIkdGsTIhLVlRl~ 92 (731)
.|....-.-|..|+..|.+++ . .|.+...|+|+|++|+.+.+|+.. -=+.+.-|.|..|..
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 455556678899999999888 2 345677899999999999888764 346677777776653
No 190
>KOG4261 consensus Talin [Cytoskeleton]
Probab=24.21 E-value=91 Score=38.59 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=67.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEe------CCeecCcccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektG---IPpeqQRLIF------~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
+.++|... +-+.++.++|+++|.+--+.|.+++- .-+.+..|+. +|-.|+..++|.+|.+.++++|..-.
T Consensus 4 lsl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~ 82 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR 82 (1003)
T ss_pred eEEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh
Confidence 34555443 45667889999999998777777643 1144555543 34568899999999999999987644
Q ss_pred ecCCCCCCCCCCCCCCCCCCcccccccCCcccccccccc-CCCC
Q 004778 90 RQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGV 132 (731)
Q Consensus 90 Rl~ggp~ss~~qI~v~tG~titl~V~psdTVesVK~~Iq-~EGI 132 (731)
+... ..+-...|...+..|+-+.+|..+++-|. +.||
T Consensus 83 k~r~------lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igI 120 (1003)
T KOG4261|consen 83 KQRP------LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGI 120 (1003)
T ss_pred hccc------ceeeecccccceeeecccccHHHHHHHHHhccCc
Confidence 3321 11111344455556666666666555555 4454
No 191
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=23.78 E-value=2.5e+02 Score=26.31 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=34.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GK 66 (731)
+..+|.|.|+++.|=.++|+.|++.+++.+.... |+..|+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 4578999999999999999999999999987774 555554
No 192
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=22.06 E-value=1.5e+02 Score=27.03 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=35.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeecC
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVLK 69 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LIF~GKvLk 69 (731)
..+.+.|+++.|=.++|+.|+..+++.+...+ +++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 68999999999999999999999999997764 567776543
No 193
>PLN02560 enoyl-CoA reductase
Probab=21.82 E-value=14 Score=40.52 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=27.4
Q ss_pred ccccccCCcccccccccc-CCCC-CcchhHHHH
Q 004778 111 GSHVAPSVVIETFNLPDR-GDGV-PSEISQIVS 141 (731)
Q Consensus 111 tl~V~psdTVesVK~~Iq-~EGI-PpdqQRLIf 141 (731)
+++++++.||+++|..|+ +.++ ++++|||++
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
Confidence 578899999999999999 6676 899999986
No 194
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=21.82 E-value=1.5e+02 Score=37.16 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=48.9
Q ss_pred CCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCccccccccc-c-cCCCEEEEe
Q 004778 27 DSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYH-V-EDGHTLHMV 88 (731)
Q Consensus 27 dGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsdYG-I-kdGsTIhLV 88 (731)
.|+.++++.+ ...|+.+||..|.++.|+-..+|.|+-. |..+..++.|+.|. . .+-.-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 3677788777 4679999999999999999988887755 67888889999986 2 344556665
No 195
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.59 E-value=2.9e+02 Score=26.28 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=47.3
Q ss_pred CCcEEEEEEeCC-Cc-----EEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCeecCccccccc----ccccCCCE
Q 004778 16 ETTIEIKIKTLD-SQ-----TYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGKVLKDDQLLSA----YHVEDGHT 84 (731)
Q Consensus 16 ~~tMqItVKtLd-GK-----t~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF~GKvLkDdkTLsd----YGIkdGsT 84 (731)
++.|-|.|.... ++ .-.+-|..++||.+|+..|.++..+.+++ .-|+.++.....+.+|.+ |+-+ +..
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGf 100 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDE-DGF 100 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCC-CCE
Confidence 455666665432 11 22345999999999999999999988876 455556655566666654 3433 445
Q ss_pred EEEeee
Q 004778 85 LHMVVR 90 (731)
Q Consensus 85 IhLVlR 90 (731)
|+|...
T Consensus 101 Lyl~Ys 106 (112)
T cd01611 101 LYMTYS 106 (112)
T ss_pred EEEEEe
Confidence 655543
No 196
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.10 E-value=2.1e+02 Score=26.01 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCcccccccccccCCCEEEEe
Q 004778 38 QVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 38 sdTV~dLKekIaektGIPpeqQRL--IF~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
-.+..+|+.|..+++.++...-+| .-.|-.++|+.-+.. +.++..++++
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L 70 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVL 70 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEE
Confidence 357999999999999998654444 566888877754433 3444444443
No 197
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=20.85 E-value=3.7e+02 Score=24.39 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCcccccccccccCCCEEEEe
Q 004778 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 32 tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
.+.|........+-+..++.+++|+..--+|-+ |--+...++..+..++.|+.|.|+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 368888888888888889999999988888766 667788888888889999998874
No 198
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=20.84 E-value=1.4e+02 Score=27.07 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=38.7
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCC-------CCeEEEeCCe-ecC------cccccccccccCCCEEEEe
Q 004778 33 LRVDKQVPVPALKEQIASVTGVLS-------EQQRLICRGK-VLK------DDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPp-------eqQRLIF~GK-vLk------DdkTLsdYGIkdGsTIhLV 88 (731)
|+|++++|+.+|-+.++++..+.. ..-.|++.+- .|+ =+++|.+. +.+|..|.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 579999999999999998743322 3345555552 232 24789999 9999988874
No 199
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=20.15 E-value=3.7e+02 Score=23.41 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=33.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEE--e-CC--eecCcc
Q 004778 28 SQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLI--C-RG--KVLKDD 71 (731)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLI--F-~G--KvLkDd 71 (731)
+...+|.|..++|+.+|-+.+.+|+++.. +.-.|+ + .| +.|.|+
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 56678999999999999999999999875 344443 2 34 456543
No 200
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=20.11 E-value=2.1e+02 Score=25.57 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred EEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhCC
Q 004778 22 KIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGV 54 (731)
Q Consensus 22 tVKtLdGKt~-tLeVd-psdTV~dLKekIaektGI 54 (731)
+-|....+.+ .|.++ ...+|.+||.+|.++.++
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 4444444443 46777 568999999999877665
No 201
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.10 E-value=3.7e+02 Score=25.48 Aligned_cols=37 Identities=24% Similarity=0.124 Sum_probs=31.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004778 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (731)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp 56 (731)
-|.|--.|+...++.+..+.||.+|-..+.+|+.++.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 4555555667778999999999999999999998877
Done!