Query 004778
Match_columns 731
No_of_seqs 292 out of 1409
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 5.7E-23 2E-27 195.9 4.8 126 12-142 14-142 (172)
2 3rt3_B Ubiquitin-like protein 99.9 1.4E-22 4.8E-27 190.1 4.2 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 4.9E-21 1.7E-25 176.1 4.0 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 2E-18 6.7E-23 144.5 10.1 77 17-93 3-79 (79)
5 3dbh_I NEDD8; cell cycle, acti 99.8 3.3E-18 1.1E-22 145.0 10.3 83 12-94 6-88 (88)
6 4dwf_A HLA-B-associated transc 99.7 3.6E-18 1.2E-22 146.4 10.6 80 16-96 3-82 (90)
7 4hcn_B Polyubiquitin, ubiquiti 99.7 3.2E-18 1.1E-22 150.3 9.4 82 13-94 17-98 (98)
8 3v6c_B Ubiquitin; structural g 99.7 8.6E-18 3E-22 145.0 10.6 81 12-92 11-91 (91)
9 3plu_A Ubiquitin-like modifier 99.7 7.3E-18 2.5E-22 149.9 9.6 76 14-89 17-92 (93)
10 4fbj_B NEDD8; effector-HOST ta 99.7 8.9E-18 3E-22 144.8 9.2 77 19-95 1-77 (88)
11 1wy8_A NP95-like ring finger p 99.7 2.6E-17 8.9E-22 140.5 11.7 82 15-96 4-87 (89)
12 1wx8_A Riken cDNA 4931431F19; 99.7 1.7E-17 5.7E-22 144.3 10.1 85 11-96 10-94 (96)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.6E-17 9E-22 139.7 10.9 80 15-94 4-83 (87)
14 1ndd_A NEDD8, protein (ubiquit 99.7 2E-17 6.8E-22 135.5 9.5 76 19-94 1-76 (76)
15 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.2E-17 7.6E-22 138.5 10.0 78 17-94 2-79 (85)
16 3n3k_B Ubiquitin; hydrolase, p 99.7 1.3E-17 4.5E-22 140.2 8.3 79 17-95 2-80 (85)
17 1uh6_A Ubiquitin-like 5; beta- 99.7 1.8E-17 6.2E-22 148.9 9.5 81 9-89 19-99 (100)
18 2uyz_B Small ubiquitin-related 99.7 1.9E-17 6.6E-22 138.4 8.9 78 17-94 2-79 (79)
19 1ttn_A DC-UBP, dendritic cell- 99.7 2.2E-17 7.4E-22 147.3 9.7 84 12-95 17-100 (106)
20 4eew_A Large proline-rich prot 99.7 2.9E-17 1E-21 140.2 9.8 76 14-90 13-88 (88)
21 2dzi_A Ubiquitin-like protein 99.7 3.9E-17 1.3E-21 136.1 10.3 79 14-92 3-81 (81)
22 3a9j_A Ubiquitin; protein comp 99.7 4.2E-17 1.4E-21 133.6 10.0 76 19-94 1-76 (76)
23 1wyw_B Ubiquitin-like protein 99.7 2.8E-17 9.4E-22 144.5 9.4 82 13-94 16-97 (97)
24 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4.1E-17 1.4E-21 141.1 9.9 77 19-95 2-78 (96)
25 2hj8_A Interferon-induced 17 k 99.7 3.4E-17 1.2E-21 141.0 9.2 79 17-95 3-81 (88)
26 2faz_A Ubiquitin-like containi 99.7 4.5E-17 1.6E-21 135.6 9.6 75 18-92 2-78 (78)
27 2wyq_A HHR23A, UV excision rep 99.7 5.5E-17 1.9E-21 136.9 10.2 78 16-93 3-83 (85)
28 1wgd_A Homocysteine-responsive 99.7 4.7E-17 1.6E-21 141.2 9.8 81 16-96 5-91 (93)
29 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.3E-16 4.5E-21 141.9 12.8 82 15-97 14-95 (106)
30 3m62_B UV excision repair prot 99.7 2.3E-17 8E-22 147.4 7.3 78 18-95 1-78 (106)
31 2kk8_A Uncharacterized protein 99.7 6.1E-17 2.1E-21 139.4 8.9 75 16-90 8-83 (84)
32 2kdi_A Ubiquitin, vacuolar pro 99.7 2.7E-17 9.3E-22 149.1 6.7 101 17-122 8-113 (114)
33 1uel_A HHR23B, UV excision rep 99.7 1.8E-16 6.1E-21 138.4 11.5 77 19-95 1-80 (95)
34 2kan_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 140.5 10.2 81 14-95 11-92 (94)
35 3vdz_A Ubiquitin-40S ribosomal 99.7 1.4E-16 4.9E-21 143.4 10.8 79 16-94 33-111 (111)
36 2l7r_A Ubiquitin-like protein 99.7 6.3E-17 2.2E-21 141.2 8.2 81 12-94 13-93 (93)
37 1sif_A Ubiquitin; hydrophobic 99.7 1.1E-16 3.9E-21 137.9 8.9 77 18-94 9-85 (88)
38 1yqb_A Ubiquilin 3; structural 99.7 2.4E-16 8E-21 139.8 10.1 82 13-95 17-98 (100)
39 2lxa_A Ubiquitin-like protein 99.7 7.1E-17 2.4E-21 141.0 6.6 74 18-91 1-78 (87)
40 1wia_A Hypothetical ubiquitin- 99.7 3.8E-16 1.3E-20 135.7 11.1 80 14-96 3-83 (95)
41 4a20_A Ubiquitin-like protein 99.7 1.5E-16 5.3E-21 141.8 8.6 78 15-92 16-97 (98)
42 1j8c_A Ubiquitin-like protein 99.7 6.1E-16 2.1E-20 142.7 12.4 81 16-97 30-110 (125)
43 1v5o_A 1700011N24RIK protein; 99.7 3.1E-16 1.1E-20 138.9 9.9 83 16-98 5-92 (102)
44 2bwf_A Ubiquitin-like protein 99.6 5E-16 1.7E-20 128.3 10.0 74 17-91 3-76 (77)
45 1yx5_B Ubiquitin; proteasome, 99.6 4.5E-16 1.5E-20 136.0 9.9 76 19-94 1-76 (98)
46 1v2y_A 3300001G02RIK protein; 99.6 2.6E-16 8.8E-21 142.4 8.4 81 14-94 3-99 (105)
47 3b1l_X E3 ubiquitin-protein li 99.4 1.4E-17 4.7E-22 137.9 0.0 75 19-93 1-75 (76)
48 2klc_A Ubiquilin-1; ubiquitin- 99.6 7E-16 2.4E-20 136.8 10.6 78 15-93 22-99 (101)
49 2ojr_A Ubiquitin; lanthide-bin 99.6 1E-15 3.5E-20 137.5 10.9 79 16-94 33-111 (111)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.2E-15 4.2E-20 140.1 11.4 83 13-95 11-103 (116)
51 3rt3_B Ubiquitin-like protein 99.6 8.5E-16 2.9E-20 144.0 10.5 79 16-94 79-157 (159)
52 3l0w_B Monoubiquitinated proli 99.6 1.4E-15 4.9E-20 146.7 10.7 78 19-96 1-78 (169)
53 1we6_A Splicing factor, putati 99.6 1.2E-15 4E-20 136.9 9.1 79 16-94 25-107 (111)
54 1wju_A NEDD8 ultimate buster-1 99.6 1.4E-15 4.9E-20 136.6 9.1 77 18-95 15-95 (100)
55 1v86_A DNA segment, CHR 7, way 99.6 2.8E-15 9.6E-20 131.6 9.7 81 11-93 10-90 (95)
56 1wxv_A BAG-family molecular ch 99.6 4.7E-15 1.6E-19 128.2 10.8 78 15-93 4-87 (92)
57 2gow_A HCG-1 protein, ubiquiti 99.6 2.7E-15 9.3E-20 139.4 9.8 81 14-94 13-103 (125)
58 1v5t_A 8430435I17RIK protein; 99.6 2.9E-15 9.9E-20 130.0 8.7 77 15-92 4-84 (90)
59 1x1m_A Ubiquitin-like protein 99.6 3.7E-15 1.2E-19 133.3 9.5 79 16-94 10-103 (107)
60 2fnj_B Transcription elongatio 99.6 1.9E-15 6.4E-20 139.6 7.7 72 19-90 1-80 (118)
61 1wgg_A Ubiquitin carboxyl-term 99.6 6E-15 2E-19 130.1 10.5 76 15-92 4-80 (96)
62 1se9_A Ubiquitin family; ubiqu 99.6 5.1E-15 1.8E-19 138.0 10.2 81 14-94 12-106 (126)
63 3q3f_A Ribonuclease/ubiquitin 99.6 3.9E-15 1.3E-19 146.9 9.6 78 17-94 104-181 (189)
64 2kdb_A Homocysteine-responsive 99.6 2.4E-15 8.3E-20 134.2 7.0 75 14-88 19-99 (99)
65 4ajy_B Transcription elongatio 99.6 3.6E-15 1.2E-19 137.7 8.2 73 19-91 1-81 (118)
66 3u30_A Ubiquitin, linear DI-ub 99.6 4.7E-15 1.6E-19 141.3 9.1 78 17-94 95-172 (172)
67 3m63_B Ubiquitin domain-contai 99.6 1.4E-15 4.7E-20 135.2 4.8 75 16-91 26-100 (101)
68 1we7_A SF3A1 protein; structur 99.6 1.1E-14 3.6E-19 131.7 10.0 78 17-94 24-111 (115)
69 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-14 4E-19 133.6 10.5 78 17-94 75-152 (152)
70 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.1E-14 3.7E-19 132.1 9.9 81 12-92 18-101 (105)
71 3u5e_m 60S ribosomal protein L 99.5 4E-16 1.4E-20 143.6 0.0 77 19-95 1-77 (128)
72 2daf_A FLJ35834 protein; hypot 99.5 2.1E-14 7.1E-19 132.6 11.3 81 13-93 10-91 (118)
73 2kd0_A LRR repeats and ubiquit 99.5 3.6E-14 1.2E-18 122.1 10.2 74 16-90 10-83 (85)
74 3u5c_f 40S ribosomal protein S 99.5 2.4E-15 8.1E-20 143.7 0.0 77 19-95 1-77 (152)
75 2dzm_A FAS-associated factor 1 99.5 1.1E-13 3.8E-18 124.1 10.1 76 17-93 7-84 (100)
76 1oqy_A HHR23A, UV excision rep 99.5 3E-14 1E-18 152.9 7.6 80 15-94 4-87 (368)
77 2kjr_A CG11242; UBL, ubiquitin 99.4 3E-13 1E-17 119.7 9.8 76 13-88 10-93 (95)
78 4b6w_A Tubulin-specific chaper 99.4 1.1E-13 3.8E-18 120.4 6.8 75 18-92 2-85 (86)
79 2dzj_A Synaptic glycoprotein S 99.4 1.6E-13 5.5E-18 119.6 7.6 72 16-87 8-85 (88)
80 3ai5_A Yeast enhanced green fl 99.4 2.9E-13 9.9E-18 142.3 9.9 79 14-92 229-307 (307)
81 1wf9_A NPL4 family protein; be 99.4 4.7E-13 1.6E-17 119.9 8.4 75 17-92 6-96 (107)
82 2kj6_A Tubulin folding cofacto 99.4 1E-12 3.4E-17 117.0 9.8 76 15-90 11-95 (97)
83 2io1_B Small ubiquitin-related 99.4 1.1E-12 3.7E-17 116.0 8.8 80 15-94 4-83 (94)
84 1v6e_A Cytoskeleton-associated 99.4 1.4E-12 4.7E-17 114.2 9.0 76 16-91 5-88 (95)
85 2xzm_9 RPS31E; ribosome, trans 99.3 8.2E-14 2.8E-18 137.7 0.0 73 19-96 1-73 (189)
86 1t0y_A Tubulin folding cofacto 99.3 3.5E-12 1.2E-16 116.9 10.3 76 17-92 5-88 (122)
87 1wz0_A Ubiquitin-like protein 99.3 1.2E-11 4.2E-16 111.4 11.8 82 14-95 20-101 (104)
88 2d07_B Ubiquitin-like protein 99.3 8.7E-12 3E-16 109.8 9.6 80 14-93 13-92 (93)
89 2io0_B Small ubiquitin-related 99.3 1.2E-11 4.2E-16 108.9 10.3 79 16-94 3-81 (91)
90 2k8h_A Small ubiquitin protein 99.2 2.6E-11 9E-16 110.5 10.7 81 14-94 22-102 (110)
91 2eke_C Ubiquitin-like protein 99.2 3.4E-11 1.2E-15 109.2 10.6 81 12-93 25-105 (106)
92 2kzr_A Ubiquitin thioesterase 99.2 1.1E-11 3.9E-16 106.4 6.6 72 19-91 1-78 (86)
93 3shq_A UBLCP1; phosphatase, hy 99.2 1.1E-11 3.7E-16 130.8 7.8 76 16-92 3-81 (320)
94 1wm3_A Ubiquitin-like protein 99.2 4E-11 1.4E-15 100.4 9.5 72 18-89 1-72 (72)
95 3a4r_A Nfatc2-interacting prot 99.2 8.3E-11 2.8E-15 100.5 10.4 74 15-88 4-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 8.6E-10 2.9E-14 96.6 9.4 76 16-91 7-93 (97)
97 3kyd_D Small ubiquitin-related 98.8 1.3E-08 4.4E-13 93.8 10.6 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.7 4.4E-08 1.5E-12 97.7 10.0 82 14-96 25-106 (200)
99 3tix_A Ubiquitin-like protein 98.7 2.9E-08 1E-12 98.8 8.2 81 14-95 53-133 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 4.2E-08 1.4E-12 98.8 0.2 83 12-95 15-97 (227)
101 2pjh_A Protein NPL4, nuclear p 98.2 4.9E-07 1.7E-11 77.7 3.6 71 17-88 3-78 (80)
102 2jxx_A Nfatc2-interacting prot 98.2 5.8E-06 2E-10 74.0 9.8 76 13-88 20-96 (97)
103 3goe_A DNA repair protein RAD6 98.1 1.5E-05 5.2E-10 69.3 9.7 73 17-89 8-81 (82)
104 3uf8_A Ubiquitin-like protein 98.1 9.4E-06 3.2E-10 80.7 9.5 82 13-95 16-97 (209)
105 3ix6_A TS, tsase, thymidylate 97.9 1.4E-06 4.9E-11 93.6 0.0 82 12-94 15-96 (360)
106 4da1_A Protein phosphatase 1K, 97.9 1.8E-06 6E-11 92.3 0.0 80 15-95 27-106 (389)
107 2l76_A Nfatc2-interacting prot 97.8 9.8E-05 3.4E-09 66.1 10.3 79 12-91 15-93 (95)
108 4efo_A Serine/threonine-protei 97.7 0.00011 3.7E-09 65.7 8.5 69 21-89 15-87 (94)
109 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.00023 8E-09 66.7 6.1 70 20-89 13-121 (128)
110 2bps_A YUKD protein; ubiquitin 97.3 0.00055 1.9E-08 59.6 7.4 71 17-87 3-80 (81)
111 2al3_A TUG long isoform; TUG U 97.0 0.0013 4.5E-08 58.4 7.1 76 18-93 9-84 (90)
112 3qx1_A FAS-associated factor 1 96.9 0.0045 1.5E-07 52.9 9.3 75 15-90 4-83 (84)
113 2dzk_A UBX domain-containing p 96.8 0.0099 3.4E-07 53.6 11.0 79 14-92 9-92 (109)
114 1wju_A NEDD8 ultimate buster-1 96.6 0.0002 6.7E-09 64.5 -1.4 36 107-142 29-65 (100)
115 3plu_A Ubiquitin-like modifier 96.5 4.6E-05 1.6E-09 68.0 -6.3 38 105-142 29-67 (93)
116 2xzm_9 RPS31E; ribosome, trans 96.4 0.00053 1.8E-08 68.0 0.0 43 101-143 2-47 (189)
117 4eew_A Large proline-rich prot 96.2 7.5E-05 2.6E-09 63.3 -6.1 58 80-142 3-63 (88)
118 1wj4_A KIAA0794 protein; UBX d 96.1 0.017 5.7E-07 53.4 8.5 75 15-90 40-119 (124)
119 3m63_B Ubiquitin domain-contai 95.9 0.00032 1.1E-08 62.1 -4.1 65 71-142 7-73 (101)
120 1uh6_A Ubiquitin-like 5; beta- 95.7 0.00033 1.1E-08 63.1 -4.7 38 105-142 36-74 (100)
121 2lxa_A Ubiquitin-like protein 95.7 0.00044 1.5E-08 60.2 -4.0 39 105-143 9-51 (87)
122 2cr5_A Reproduction 8; UBX dom 95.6 0.062 2.1E-06 48.3 9.6 74 16-90 21-98 (109)
123 1s3s_G P47 protein; AAA ATPase 95.3 0.045 1.5E-06 50.6 7.9 71 15-85 49-123 (127)
124 4ajy_B Transcription elongatio 95.2 0.00076 2.6E-08 62.5 -4.2 34 109-142 13-47 (118)
125 3b1l_X E3 ubiquitin-protein li 94.1 0.0035 1.2E-07 51.2 0.0 38 105-142 8-46 (76)
126 2daj_A KIAA0977 protein, COBL- 95.1 0.042 1.4E-06 48.6 6.7 67 15-81 7-76 (91)
127 4b6w_A Tubulin-specific chaper 94.8 0.003 1E-07 54.7 -1.5 35 108-142 15-50 (86)
128 2kjr_A CG11242; UBL, ubiquitin 94.7 0.0018 6.3E-08 57.1 -3.0 35 108-142 28-63 (95)
129 3phx_B Ubiquitin-like protein 94.7 0.00069 2.4E-08 56.1 -5.6 38 105-142 12-50 (79)
130 3ivf_A Talin-1; FERM domain, c 94.6 0.052 1.8E-06 57.3 7.2 104 18-128 3-116 (371)
131 3u5e_m 60S ribosomal protein L 94.6 0.0061 2.1E-07 55.8 0.0 38 105-142 8-46 (128)
132 2fnj_B Transcription elongatio 94.5 0.0011 3.7E-08 61.3 -5.1 34 109-142 13-47 (118)
133 2kj6_A Tubulin folding cofacto 94.4 0.0023 7.8E-08 56.8 -3.1 35 108-142 27-62 (97)
134 2dzm_A FAS-associated factor 1 94.4 0.0016 5.3E-08 58.4 -4.3 37 105-141 16-53 (100)
135 4dwf_A HLA-B-associated transc 94.4 0.00083 2.8E-08 57.0 -5.9 38 105-142 13-51 (90)
136 2kk8_A Uncharacterized protein 94.3 0.00088 3E-08 57.3 -5.9 38 105-142 18-56 (84)
137 3u5c_f 40S ribosomal protein S 94.3 0.0079 2.7E-07 57.4 0.0 39 105-143 8-47 (152)
138 3dbh_I NEDD8; cell cycle, acti 94.1 0.0017 5.8E-08 54.4 -4.5 38 105-142 20-58 (88)
139 4e71_A Plexin-B2, MM1; transme 94.0 0.26 8.7E-06 45.4 9.3 74 17-90 10-110 (111)
140 2r2o_A Plexin-B1; effector dom 93.9 0.19 6.4E-06 47.8 8.4 76 17-92 23-130 (138)
141 3m62_B UV excision repair prot 93.9 0.0029 1E-07 56.2 -3.6 38 105-142 9-47 (106)
142 1wyw_B Ubiquitin-like protein 93.8 0.0041 1.4E-07 54.2 -2.7 39 105-143 29-68 (97)
143 3v6c_B Ubiquitin; structural g 93.8 0.0019 6.5E-08 55.3 -4.8 38 105-142 25-63 (91)
144 4fbj_B NEDD8; effector-HOST ta 93.7 0.0017 5.7E-08 55.6 -5.3 38 105-142 8-46 (88)
145 3jyu_A Ubiquitin carboxyl-term 93.4 0.37 1.3E-05 48.5 10.3 76 19-94 140-224 (231)
146 1v5t_A 8430435I17RIK protein; 93.4 0.0033 1.1E-07 54.1 -4.0 35 106-140 15-51 (90)
147 1wh3_A 59 kDa 2'-5'-oligoadeny 93.2 0.0027 9.3E-08 53.3 -4.7 38 105-142 15-53 (87)
148 4a3p_A Ubiquitin carboxyl-term 92.9 0.43 1.5E-05 47.5 9.9 76 19-94 128-212 (217)
149 2hj8_A Interferon-induced 17 k 92.9 0.0083 2.8E-07 51.1 -2.2 37 106-142 13-50 (88)
150 2uyz_B Small ubiquitin-related 92.8 0.0029 1E-07 52.3 -5.0 38 105-142 11-49 (79)
151 1wgh_A Ubiquitin-like 3, HCG-1 92.8 0.0057 1.9E-07 56.2 -3.5 39 105-143 24-71 (116)
152 2l7r_A Ubiquitin-like protein 92.8 0.0024 8.2E-08 55.3 -5.8 43 100-142 20-63 (93)
153 4a20_A Ubiquitin-like protein 92.8 0.0045 1.5E-07 55.0 -4.2 39 105-143 27-69 (98)
154 1wgg_A Ubiquitin carboxyl-term 92.5 0.0032 1.1E-07 55.2 -5.5 36 107-142 16-53 (96)
155 3mtn_B UBA80, ubcep1, ubiquiti 92.4 0.0068 2.3E-07 50.1 -3.3 37 106-142 12-49 (85)
156 1wgd_A Homocysteine-responsive 92.4 0.0067 2.3E-07 52.1 -3.5 34 109-142 21-57 (93)
157 2faz_A Ubiquitin-like containi 92.3 0.0032 1.1E-07 51.8 -5.4 38 105-142 10-50 (78)
158 4dbg_A Ranbp-type and C3HC4-ty 92.2 0.0044 1.5E-07 56.2 -5.0 36 108-143 37-73 (105)
159 1wy8_A NP95-like ring finger p 92.0 0.0055 1.9E-07 51.7 -4.4 37 106-142 16-55 (89)
160 1sif_A Ubiquitin; hydrophobic 91.9 0.0042 1.4E-07 53.1 -5.3 43 100-142 10-55 (88)
161 3n3k_B Ubiquitin; hydrolase, p 91.9 0.0058 2E-07 50.7 -4.3 37 106-142 12-49 (85)
162 4hcn_B Polyubiquitin, ubiquiti 91.9 0.0046 1.6E-07 53.8 -5.2 38 105-142 30-68 (98)
163 1se9_A Ubiquitin family; ubiqu 91.8 0.012 4.1E-07 55.0 -2.7 39 105-143 24-71 (126)
164 2gow_A HCG-1 protein, ubiquiti 91.7 0.0096 3.3E-07 55.3 -3.5 39 105-143 25-72 (125)
165 3k9o_B Ubiquitin, UBB+1; E2-25 91.5 0.0049 1.7E-07 52.8 -5.4 38 105-142 9-47 (96)
166 1v5o_A 1700011N24RIK protein; 91.4 0.01 3.5E-07 52.1 -3.5 36 107-142 21-57 (102)
167 2kdb_A Homocysteine-responsive 91.4 0.0085 2.9E-07 53.3 -4.1 34 109-142 37-73 (99)
168 1ttn_A DC-UBP, dendritic cell- 91.3 0.0067 2.3E-07 53.7 -4.9 38 105-142 31-69 (106)
169 1ryj_A Unknown; beta/alpha pro 91.2 1.5 5.2E-05 36.1 9.7 64 18-91 4-67 (70)
170 1vjk_A Molybdopterin convertin 91.1 1.4 4.7E-05 38.4 9.8 69 17-90 8-94 (98)
171 1uel_A HHR23B, UV excision rep 91.1 0.007 2.4E-07 52.4 -4.8 38 105-142 8-49 (95)
172 2dzi_A Ubiquitin-like protein 91.1 0.0078 2.7E-07 49.5 -4.3 37 106-142 16-53 (81)
173 1v86_A DNA segment, CHR 7, way 91.1 0.0068 2.3E-07 52.8 -4.9 37 106-142 25-62 (95)
174 1ndd_A NEDD8, protein (ubiquit 90.7 0.0059 2E-07 49.3 -5.4 37 106-142 9-46 (76)
175 3l0w_B Monoubiquitinated proli 90.6 0.0078 2.7E-07 57.9 -5.5 39 105-143 8-47 (169)
176 2kan_A Uncharacterized protein 90.6 0.0093 3.2E-07 52.0 -4.5 34 109-142 26-60 (94)
177 1v6e_A Cytoskeleton-associated 90.6 0.014 4.7E-07 50.7 -3.5 34 109-142 20-54 (95)
178 2l32_A Small archaeal modifier 90.5 0.52 1.8E-05 39.8 6.3 63 19-91 1-63 (74)
179 1oey_A P67-PHOX, neutrophil cy 90.0 0.59 2E-05 40.9 6.4 72 16-90 3-81 (83)
180 2ojr_A Ubiquitin; lanthide-bin 89.8 0.004 1.4E-07 55.6 -7.7 37 106-142 44-81 (111)
181 3h6n_A Plexin-D1; structural g 89.8 1.3 4.4E-05 41.7 8.8 74 18-91 4-105 (127)
182 2wyq_A HHR23A, UV excision rep 89.6 0.015 5.3E-07 48.3 -3.8 38 105-142 13-54 (85)
183 1we7_A SF3A1 protein; structur 89.5 0.016 5.3E-07 52.0 -4.1 57 83-142 24-81 (115)
184 3q3f_A Ribonuclease/ubiquitin 89.1 0.029 1E-06 55.4 -2.9 38 105-142 113-151 (189)
185 1wx8_A Riken cDNA 4931431F19; 89.0 0.018 6.2E-07 49.5 -3.9 36 107-142 26-62 (96)
186 1yx5_B Ubiquitin; proteasome, 89.0 0.014 4.8E-07 50.5 -4.7 37 106-142 9-46 (98)
187 2klc_A Ubiquilin-1; ubiquitin- 88.8 0.024 8.4E-07 49.8 -3.3 36 107-142 34-70 (101)
188 1we6_A Splicing factor, putati 88.7 0.024 8.1E-07 50.5 -3.5 52 81-142 24-77 (111)
189 2kd0_A LRR repeats and ubiquit 88.4 0.014 4.9E-07 49.7 -4.9 37 106-142 20-57 (85)
190 4e74_A Plexin-A4; RBD, structu 88.2 1 3.5E-05 41.8 6.9 75 17-91 12-115 (117)
191 1wxv_A BAG-family molecular ch 88.1 0.02 6.8E-07 49.0 -4.2 36 107-142 16-57 (92)
192 3a9j_A Ubiquitin; protein comp 87.8 0.013 4.4E-07 47.2 -5.4 37 106-142 9-46 (76)
193 2bwf_A Ubiquitin-like protein 87.6 0.016 5.5E-07 47.1 -4.9 36 107-142 13-49 (77)
194 3vdz_A Ubiquitin-40S ribosomal 87.6 0.019 6.4E-07 51.4 -4.9 38 105-142 43-81 (111)
195 1j8c_A Ubiquitin-like protein 87.5 0.035 1.2E-06 51.0 -3.3 36 107-142 41-77 (125)
196 2dzj_A Synaptic glycoprotein S 87.5 0.041 1.4E-06 47.6 -2.6 32 111-142 26-60 (88)
197 2kdi_A Ubiquitin, vacuolar pro 87.4 0.025 8.4E-07 51.0 -4.3 38 105-142 17-55 (114)
198 1t0y_A Tubulin folding cofacto 87.3 0.044 1.5E-06 49.9 -2.7 34 109-142 19-53 (122)
199 3rpf_C Molybdopterin convertin 87.1 1.7 5.7E-05 35.9 7.0 69 19-92 1-72 (74)
200 1vd2_A Protein kinase C, IOTA 87.0 2.6 9E-05 37.2 8.6 51 15-66 3-54 (89)
201 3kuz_A Plexin-C1; structural g 86.9 4.5 0.00016 37.9 10.5 73 17-89 18-125 (126)
202 1v2y_A 3300001G02RIK protein; 86.6 0.01 3.5E-07 53.6 -7.3 33 105-137 15-48 (105)
203 1wx7_A Ubiquilin 3; ubiquitin- 86.5 0.046 1.6E-06 48.2 -3.0 33 110-142 29-62 (106)
204 1wgk_A Riken cDNA 2900073H19 p 86.3 1.3 4.4E-05 40.4 6.4 77 17-95 10-109 (114)
205 1yqb_A Ubiquilin 3; structural 86.0 0.052 1.8E-06 47.7 -2.9 33 110-142 34-67 (100)
206 3po0_A Small archaeal modifier 86.0 5.1 0.00017 33.8 9.6 59 29-92 18-87 (89)
207 1tyg_B YJBS; alpha beta barrel 85.6 1.8 6.1E-05 37.9 6.6 68 14-91 16-84 (87)
208 4efo_A Serine/threonine-protei 84.0 0.034 1.2E-06 49.6 -5.0 39 105-143 21-60 (94)
209 1wf9_A NPL4 family protein; be 83.9 0.05 1.7E-06 48.4 -4.0 32 111-142 20-53 (107)
210 1wgr_A Growth factor receptor- 83.7 4.6 0.00016 36.4 8.6 80 13-92 4-94 (100)
211 2juo_A GA-binding protein alph 82.6 2.6 9E-05 37.3 6.4 62 31-92 5-66 (89)
212 1ef1_A Moesin; membrane, FERM 81.7 4.8 0.00017 40.6 9.1 72 18-90 1-78 (294)
213 3dwg_C 9.5 kDa culture filtrat 80.8 5.2 0.00018 34.1 7.7 73 19-93 1-92 (93)
214 1wia_A Hypothetical ubiquitin- 80.7 0.076 2.6E-06 45.6 -4.0 36 105-142 15-50 (95)
215 1h4r_A Merlin; FERM, neurofibr 80.7 4.4 0.00015 41.5 8.5 74 16-90 20-98 (314)
216 1ip9_A BEM1 protein; ubiquitin 80.4 5.3 0.00018 35.2 7.5 67 17-87 11-82 (85)
217 1x1m_A Ubiquitin-like protein 80.1 0.11 3.8E-06 46.0 -3.2 29 114-142 40-73 (107)
218 3hm6_X Plexin-B1; structural g 79.9 4.4 0.00015 46.7 8.8 76 17-92 256-363 (644)
219 3ai5_A Yeast enhanced green fl 79.9 0.092 3.1E-06 55.5 -4.5 38 105-142 241-279 (307)
220 3qij_A Protein 4.1; cytoskelet 79.9 3.6 0.00012 42.2 7.5 81 10-90 9-95 (296)
221 1oqy_A HHR23A, UV excision rep 78.3 0.1 3.6E-06 56.2 -4.7 39 105-143 15-57 (368)
222 2qjl_A URM1, ubiquitin-related 77.9 14 0.00048 32.1 9.6 73 18-92 1-97 (99)
223 3ivf_A Talin-1; FERM domain, c 77.4 8.3 0.00028 40.5 9.5 74 17-90 84-167 (371)
224 1fm0_D Molybdopterin convertin 77.0 6.6 0.00023 32.3 6.9 57 29-91 17-78 (81)
225 1wgy_A RAP guanine nucleotide 75.8 9.5 0.00033 34.7 8.0 78 14-91 5-87 (104)
226 3shq_A UBLCP1; phosphatase, hy 75.1 0.15 5.1E-06 53.9 -4.5 36 106-141 13-49 (320)
227 2l52_A Methanosarcina acetivor 74.8 12 0.0004 32.7 8.3 69 18-90 3-95 (99)
228 2i1j_A Moesin; FERM, coiled-co 74.6 7.6 0.00026 44.0 8.8 74 17-91 3-82 (575)
229 2kl0_A Putative thiamin biosyn 73.0 7 0.00024 32.7 6.1 60 27-94 6-65 (73)
230 3ig3_A Plxna3 protein; plexin 73.0 11 0.00039 43.3 9.5 76 17-92 232-336 (627)
231 2kmc_A Fermitin family homolog 72.9 15 0.00053 33.3 8.5 72 19-90 20-99 (102)
232 2kvr_A Ubiquitin carboxyl-term 72.1 3 0.0001 38.8 4.0 33 31-63 58-90 (130)
233 2kzr_A Ubiquitin thioesterase 72.0 0.14 4.9E-06 43.4 -4.6 36 106-142 9-46 (86)
234 1f0z_A THis protein; ubiquitin 71.0 6.9 0.00024 31.6 5.5 58 27-91 6-63 (66)
235 2k9x_A Tburm1, uncharacterized 71.0 1.5 5.1E-05 39.8 1.6 76 17-94 3-102 (110)
236 2q5w_D Molybdopterin convertin 70.0 7.3 0.00025 31.8 5.5 57 29-91 16-74 (77)
237 2k5p_A THis protein, thiamine- 64.7 7.1 0.00024 33.2 4.4 68 19-94 1-69 (78)
238 2cu3_A Unknown function protei 62.8 14 0.00048 29.6 5.7 57 27-91 5-61 (64)
239 2io1_B Small ubiquitin-related 58.8 0.5 1.7E-05 41.4 -3.9 42 105-146 15-57 (94)
240 2kmm_A Guanosine-3',5'-BIS(dip 58.6 13 0.00045 29.8 4.9 63 19-90 1-63 (73)
241 4eut_A Serine/threonine-protei 58.6 31 0.0011 35.7 8.9 59 21-79 313-374 (396)
242 2dhz_A RAP guanine nucleotide 53.8 32 0.0011 32.0 7.1 77 15-91 6-93 (120)
243 2ylm_A Ubiquitin carboxyl-term 53.8 17 0.00059 40.7 6.4 78 14-91 126-218 (530)
244 3qa8_A MGC80376 protein; kinas 53.1 12 0.00043 43.1 5.3 51 27-77 320-371 (676)
245 1q1o_A Cell division control p 52.2 19 0.00066 32.4 5.2 48 18-65 5-64 (98)
246 2daf_A FLJ35834 protein; hypot 52.0 0.65 2.2E-05 43.1 -4.4 37 107-143 26-63 (118)
247 2g1e_A Hypothetical protein TA 51.0 48 0.0017 27.5 7.3 58 33-91 19-87 (90)
248 2hj1_A Hypothetical protein; s 46.3 36 0.0012 30.2 6.0 71 17-92 11-87 (97)
249 2ylm_A Ubiquitin carboxyl-term 43.4 17 0.00057 40.8 4.2 31 32-62 39-69 (530)
250 3au4_A Myosin-X; protein-prote 42.8 42 0.0014 37.2 7.3 47 17-63 215-263 (555)
251 1f2r_I Inhibitor of caspase-ac 42.7 1.3E+02 0.0044 27.2 9.0 70 16-90 16-89 (100)
252 1wm3_A Ubiquitin-like protein 42.6 1 3.5E-05 37.2 -4.3 41 105-145 9-50 (72)
253 1rws_A Hypothetical protein PF 40.4 9.3 0.00032 31.8 1.2 48 33-89 25-72 (77)
254 2c7h_A RBBP6, retinoblastoma-b 39.1 65 0.0022 28.4 6.4 46 16-61 4-51 (86)
255 2io0_B Small ubiquitin-related 39.1 2 6.7E-05 37.5 -3.3 42 105-146 13-55 (91)
256 3onh_A Ubiquitin-activating en 37.1 53 0.0018 30.8 5.8 52 37-89 18-78 (127)
257 3a4r_A Nfatc2-interacting prot 36.1 1.1 3.7E-05 37.8 -5.2 41 105-145 15-57 (79)
258 2lgx_A Fermitin family homolog 36.0 12 0.00042 34.3 1.4 71 19-90 27-102 (112)
259 2eel_A Cell death activator CI 35.1 73 0.0025 28.3 6.1 67 19-91 10-79 (91)
260 4gmv_A RAS-associated and plec 34.3 65 0.0022 33.5 6.7 72 17-88 30-112 (281)
261 3ge3_C Toluene-4-monooxygenase 34.1 2.1E+02 0.0071 25.2 8.7 71 19-89 4-82 (84)
262 2inc_C TOUB protein; DIIRON, 4 33.6 1.4E+02 0.0046 26.3 7.4 60 31-90 15-82 (83)
263 1wjn_A Tubulin-folding protein 32.9 5.1 0.00017 34.5 -1.6 36 107-142 22-58 (97)
264 1y8x_B Ubiquitin-activating en 32.2 55 0.0019 29.2 4.9 59 30-88 6-82 (98)
265 2d07_B Ubiquitin-like protein 29.8 2.6 9E-05 36.6 -4.0 42 106-147 26-68 (93)
266 2v1y_A Phosphatidylinositol-4, 25.7 1.1E+02 0.0036 28.0 5.7 75 15-90 16-104 (108)
267 2k8h_A Small ubiquitin protein 25.7 3.2 0.00011 37.6 -4.3 41 105-145 34-75 (110)
268 3u52_E Phenol hydroxylase comp 25.6 1.5E+02 0.0051 27.6 6.6 77 12-88 17-107 (119)
269 3pvl_A Myosin VIIA isoform 1; 25.4 86 0.0029 36.1 6.2 40 17-56 262-301 (655)
270 3w1s_C Ubiquitin-like protein 24.5 2.8E+02 0.0095 24.3 8.0 71 15-89 5-84 (91)
271 3hk0_A Growth factor receptor- 24.4 71 0.0024 32.7 4.8 58 19-76 9-73 (256)
272 1wz0_A Ubiquitin-like protein 23.6 3.5 0.00012 36.9 -4.5 43 105-147 32-75 (104)
273 3tca_A Amyloid beta A4 precurs 23.6 1.4E+02 0.0049 29.3 6.8 57 17-73 33-96 (291)
274 1pqs_A Cell division control p 21.1 65 0.0022 27.6 3.1 36 30-65 3-43 (77)
275 2eke_C Ubiquitin-like protein 21.0 4 0.00014 36.8 -4.7 42 106-147 39-81 (106)
276 2beq_A E2 glycoprotein; viral 20.7 1.4E+02 0.005 22.7 4.5 28 278-306 11-38 (38)
277 3r8s_T 50S ribosomal protein L 20.3 1.8E+02 0.0061 25.7 5.9 40 28-67 27-67 (93)
278 1wmh_B Partitioning defective- 20.1 3.5E+02 0.012 23.7 7.6 48 17-65 5-54 (86)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.86 E-value=5.7e-23 Score=195.91 Aligned_cols=126 Identities=30% Similarity=0.448 Sum_probs=113.8
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.......|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||+++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 92 PVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 92 ~ggp~ss~~qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+ ++.+++ .+|+.+.+.|.++++|..||.+|+ ++|||+++|||+|.
T Consensus 94 ~g-----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 94 RG-----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CC-----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cc-----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 76 344544 678899999999999999999999 89999999999985
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.85 E-value=1.4e-22 Score=190.10 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=111.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCcccccccccccCCCEEEEeeec-CCC
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI-F-~GKvLkDdkTLsdYGIkdGsTIhLVlRl-~gg 94 (731)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 489999999999999999999999999999999999999999999 9 7999999999999999999999999984 33
Q ss_pred CCCCCCCCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 95 p~ss~~qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+++++ .+|+.+.++|++++||+.||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 466655 678999999999999999999999 89999999999985
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=4.9e-21 Score=176.09 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=110.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ss 98 (731)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 99 ~~qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+++ ..|+.+.+.|.++++|..+|.+|+ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 344444 568888999999999999999999 89999999999975
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=144.49 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=3.3e-18 Score=144.99 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+..+...|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004778 92 PVP 94 (731)
Q Consensus 92 ~gg 94 (731)
.++
T Consensus 86 ~GG 88 (88)
T 3dbh_I 86 RGG 88 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=3.6e-18 Score=146.38 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
..+|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||+++.+..+
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 899999999987654
Q ss_pred C
Q 004778 96 S 96 (731)
Q Consensus 96 ~ 96 (731)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.2e-18 Score=150.25 Aligned_cols=82 Identities=34% Similarity=0.487 Sum_probs=75.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
...+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004778 93 VP 94 (731)
Q Consensus 93 gg 94 (731)
++
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=8.6e-18 Score=145.05 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 004778 92 P 92 (731)
Q Consensus 92 ~ 92 (731)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.73 E-value=7.3e-18 Score=149.91 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
....+|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|.||+|+|+.+|++|+|++|++|||+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999974
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.72 E-value=8.9e-18 Score=144.82 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998864
No 11
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=140.53 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=76.9
Q ss_pred CCCcEEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 15 SETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 15 s~~tMqItVKtLdG-Kt~tL-eVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
...+|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 44679999999999 79999 59999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004778 93 VPSS 96 (731)
Q Consensus 93 ggp~ 96 (731)
++.+
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 12
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=144.31 Aligned_cols=85 Identities=31% Similarity=0.425 Sum_probs=78.6
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 11 ~se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
....+..+|+|+||+. |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++
T Consensus 10 ~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 10 GREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp CSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred CCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3444568899999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004778 91 QPVPSS 96 (731)
Q Consensus 91 l~ggp~ 96 (731)
+.+++.
T Consensus 89 ~~~g~~ 94 (96)
T 1wx8_A 89 SHSGPS 94 (96)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 887543
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=139.71 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=76.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
+..+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999875
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=2e-17 Score=135.52 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998763
No 15
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.2e-17 Score=138.50 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 16
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.3e-17 Score=140.20 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=73.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998753
No 17
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=148.94 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=76.3
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEe
Q 004778 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 9 ~s~se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
+-.+++...+|+|+||++.|+++.|+|++++||.+||++|++++|+|+++|||+|.||+|+|+++|++|+|+++++|||+
T Consensus 19 ~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 19 PRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred cccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred e
Q 004778 89 V 89 (731)
Q Consensus 89 l 89 (731)
.
T Consensus 99 ~ 99 (100)
T 1uh6_A 99 Y 99 (100)
T ss_dssp C
T ss_pred e
Confidence 5
No 18
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=1.9e-17 Score=138.45 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=74.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
..|+|+||+++|+++.++|++++||.+||++|+++.++|+++|||+|+|+.|+|+++|++|+|+++++|||++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999998763
No 19
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.2e-17 Score=147.30 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.......|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||+++.
T Consensus 17 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 17 PPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp ----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 33455779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 004778 92 PVPS 95 (731)
Q Consensus 92 ~ggp 95 (731)
+...
T Consensus 97 ~~~~ 100 (106)
T 1ttn_A 97 PVQN 100 (106)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 20
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=140.20 Aligned_cols=76 Identities=45% Similarity=0.673 Sum_probs=71.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 345679999999999999999999999999999999999999999999999999999999999999 8999999986
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=136.15 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=74.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.+..+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999999863
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=4.2e-17 Score=133.58 Aligned_cols=76 Identities=37% Similarity=0.546 Sum_probs=73.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998764
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=2.8e-17 Score=144.48 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=76.2
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
......|+|+||+++|+++.|+|++++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++.
T Consensus 16 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 16 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp ---CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004778 93 VP 94 (731)
Q Consensus 93 gg 94 (731)
++
T Consensus 96 GG 97 (97)
T 1wyw_B 96 GG 97 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 24
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.70 E-value=4.1e-17 Score=141.13 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||++++.++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998764
No 25
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=140.96 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=72.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999987753
No 26
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.5e-17 Score=135.64 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=72.0
Q ss_pred cEEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 18 tMqItVKtLdGKt~-tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.|+|+||+++|+++ .++ |++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 899 9999999999999999999999999999999999999999999999999999999864
No 27
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=5.5e-17 Score=136.93 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=72.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaek---tGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
..+|+|+||+++|+++.++|++++||.+||++|+++ +++|+++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 467999999999999999999999999999999998 89999999999999999999999999999999999999876
Q ss_pred C
Q 004778 93 V 93 (731)
Q Consensus 93 g 93 (731)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 28
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.7e-17 Score=141.19 Aligned_cols=81 Identities=30% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCcccccccc--cccCCCEEEEee
Q 004778 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (731)
Q Consensus 16 ~~tMqItVKtLdGK--t~tLeVdpsdTV~dLKekIaekt--GIPpeqQRLIF~GKvLkDdkTLsdY--GIkdGsTIhLVl 89 (731)
...|+|+||+++++ ++.|+|++++||.+||++|++++ ++|+++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999999988 67778889999999999999998 9999999999999999999999999 999999999999
Q ss_pred ecCCCCC
Q 004778 90 RQPVPSS 96 (731)
Q Consensus 90 Rl~ggp~ 96 (731)
++.++++
T Consensus 85 ~~~gg~~ 91 (93)
T 1wgd_A 85 NVKSGPS 91 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887643
No 29
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-16 Score=141.86 Aligned_cols=82 Identities=28% Similarity=0.412 Sum_probs=76.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
.+.+|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 467899999999886 7999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 004778 95 SSS 97 (731)
Q Consensus 95 p~s 97 (731)
+..
T Consensus 93 ~~~ 95 (106)
T 1wx7_A 93 AMG 95 (106)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 30
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.3e-17 Score=147.45 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
+|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999976543
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=6.1e-17 Score=139.41 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCcccccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKv-LkDdkTLsdYGIkdGsTIhLVlR 90 (731)
...|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 32
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.7e-17 Score=149.11 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=91.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ 96 (731)
..++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++++.++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCC-----CCCCCcccccccCCcccc
Q 004778 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (731)
Q Consensus 97 ss~~qI~v-----~tG~titl~V~psdTVes 122 (731)
++++ .+|++++++|+++++|+.
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 2333 357888899999988864
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.8e-16 Score=138.43 Aligned_cols=77 Identities=32% Similarity=0.559 Sum_probs=73.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaek---tGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
|+|+||+++|+.+.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999999876543
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-16 Score=140.47 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=76.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcc-cccccccccCCCEEEEeeecC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsdYGIkdGsTIhLVlRl~ 92 (731)
.....|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|+++++|+|+++++
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 456679999999877 899999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCC
Q 004778 93 VPS 95 (731)
Q Consensus 93 ggp 95 (731)
++.
T Consensus 90 gg~ 92 (94)
T 2kan_A 90 NRA 92 (94)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=1.4e-16 Score=143.44 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
...|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999998763
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=141.20 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.......|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++|+
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 34456679999999 7999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004778 92 PVP 94 (731)
Q Consensus 92 ~gg 94 (731)
.++
T Consensus 91 ~GG 93 (93)
T 2l7r_A 91 LGG 93 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=137.90 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++++.++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998875
No 38
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.4e-16 Score=139.80 Aligned_cols=82 Identities=29% Similarity=0.426 Sum_probs=76.4
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.....+|+|+||+++|+ +.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 34567799999999886 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004778 93 VPS 95 (731)
Q Consensus 93 ggp 95 (731)
+++
T Consensus 96 ~~p 98 (100)
T 1yqb_A 96 HRA 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 39
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.1e-17 Score=141.03 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCcccccccccc-cCCCEEEEeeec
Q 004778 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVd--psdTV~dLKekI-aektGIPpeqQRLIF~GKvLkDdkTLsdYGI-kdGsTIhLVlRl 91 (731)
+|+|+||+++|+++.|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+.+|++|+| ++|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 5999999999999998766 999999999999 9999999999999999999999999999999 799999999874
No 40
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.8e-16 Score=135.72 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcc-cccccccccCCCEEEEeeecC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsdYGIkdGsTIhLVlRl~ 92 (731)
++...|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.+
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 456779999999999999999999999999999999987 8999999999999999 999999999999999999987
Q ss_pred CCCC
Q 004778 93 VPSS 96 (731)
Q Consensus 93 ggp~ 96 (731)
...+
T Consensus 80 ~~~~ 83 (95)
T 1wia_A 80 GAAV 83 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 41
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.5e-16 Score=141.75 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.3
Q ss_pred CCCcEEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCcccccccccc-cCCCEEEEeee
Q 004778 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tL--eVdpsdTV~dLKekI-aektGIPpeqQRLIF~GKvLkDdkTLsdYGI-kdGsTIhLVlR 90 (731)
....|+|+||+++|++|.+ +|++++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 4567999999999998777 566999999999999 8889999999999999999999999999999 99999999998
Q ss_pred cC
Q 004778 91 QP 92 (731)
Q Consensus 91 l~ 92 (731)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 42
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=6.1e-16 Score=142.74 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
..+|+|+||++ ++++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||++++.++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999998 99999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 004778 96 SS 97 (731)
Q Consensus 96 ~s 97 (731)
..
T Consensus 109 ~~ 110 (125)
T 1j8c_A 109 SS 110 (125)
T ss_dssp --
T ss_pred CC
Confidence 44
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.1e-16 Score=138.93 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcc-cccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsdYGIkdGsTIhLVlR 90 (731)
...|+|+||+..+ +++.++|++++||.+||++|+++++||+++|||+|+||.|+|+ ++|++|+|++|++|||+++
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 3569999999754 7999999999999999999999999999999999999999988 7999999999999999999
Q ss_pred cCCCCCCC
Q 004778 91 QPVPSSSD 98 (731)
Q Consensus 91 l~ggp~ss 98 (731)
..+++.++
T Consensus 85 ~~gg~~~~ 92 (102)
T 1v5o_A 85 DNVGLRTP 92 (102)
T ss_dssp CCCCCSSC
T ss_pred CCCCCCCC
Confidence 88776543
No 44
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.65 E-value=5e-16 Score=128.27 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=70.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 3 M~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 359999999 99999999999999999999999999999999999999999999999999999999999998764
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=4.5e-16 Score=135.98 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998874
No 46
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.6e-16 Score=142.35 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-cccccccc
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAY 77 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp---------------eqQRLIF~GKvLk-DdkTLsdY 77 (731)
++...|+|+||+++|+++.|+|++++||.+||++|++++++|+ ++|+|+|+||+|+ |+++|++|
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 3445699999999999999999999999999999999999887 4679999999996 56999999
Q ss_pred cccCCCEEEEeeecCCC
Q 004778 78 HVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 78 GIkdGsTIhLVlRl~gg 94 (731)
+|++|++|||++++.+.
T Consensus 83 gI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp TCCSSEEEEEEECSCSC
T ss_pred CCCCCCEEEEEehhccC
Confidence 99999999999998764
No 47
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.45 E-value=1.4e-17 Score=137.91 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999765
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=136.83 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=73.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
....|+|+||+. |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 456799999998 899999999999999999999999999999999999999999999999999999999999998765
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=137.49 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
...|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998763
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.2e-15 Score=140.13 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=74.1
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCcccccccccccCC--
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG-- 82 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIae------ktGI--PpeqQRLIF~GKvLkDdkTLsdYGIkdG-- 82 (731)
......|+|+||+++|++++|+|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|+.+
T Consensus 11 ~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 11 HVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT 90 (116)
T ss_dssp CCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCE
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc
Confidence 34567799999999999999999999999999999999 6675 6999999999999999999999999766
Q ss_pred CEEEEeeecCCCC
Q 004778 83 HTLHMVVRQPVPS 95 (731)
Q Consensus 83 sTIhLVlRl~ggp 95 (731)
.+|||++|.....
T Consensus 91 ~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 91 TVMHLVARETLPE 103 (116)
T ss_dssp EEEEEEECSSCSS
T ss_pred eEEEEEccCCCCC
Confidence 6899999876543
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=8.5e-16 Score=144.05 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|+.++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999875
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.61 E-value=1.4e-15 Score=146.68 Aligned_cols=78 Identities=36% Similarity=0.542 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ 96 (731)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988643
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.2e-15 Score=136.94 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCcEEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 16 ETTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 16 ~~tMqItVKtL---dGKt~tLeVdp-sdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
...|+|+|+++ +|+++.++|++ ++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35699999999 89999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 004778 92 PVP 94 (731)
Q Consensus 92 ~gg 94 (731)
.++
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 54
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.4e-15 Score=136.65 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=69.1
Q ss_pred cEEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 18 TIEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 18 tMqItVKtLd----GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
...|.|+..+ ++++.|+|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|+|+++++| +++++++
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 3466777776 7799999999999999999999999999999999999999999999999999999999 6666666
Q ss_pred CC
Q 004778 94 PS 95 (731)
Q Consensus 94 gp 95 (731)
..
T Consensus 94 ~~ 95 (100)
T 1wju_A 94 SS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 55
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.8e-15 Score=131.60 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 11 ~se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.....+.+|+|+||+ .+++|.|+|++++||.+||++|+++++||+++|||+|+||.| |+.+|++|+|+++++|||+.+
T Consensus 10 ~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 10 GGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 344556789999996 689999999999999999999999999999999999999999 455999999999999999987
Q ss_pred cCC
Q 004778 91 QPV 93 (731)
Q Consensus 91 l~g 93 (731)
...
T Consensus 88 ~~~ 90 (95)
T 1v86_A 88 TIS 90 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 56
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=4.7e-15 Score=128.16 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCc-ccccccccccCCCEEEEe
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdps-----dTV~dLKekIaektGIPpeqQRLIF~GKvLkD-dkTLsdYGIkdGsTIhLV 88 (731)
...+|+|+||+ .++++.++|+++ +||.+||++|++++++|+++|||+|+||.|+| +++|++|+|+++++|||+
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 34679999999 589999999995 99999999999999999999999999999998 568999999999999999
Q ss_pred eecCC
Q 004778 89 VRQPV 93 (731)
Q Consensus 89 lRl~g 93 (731)
.+...
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 87654
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=139.36 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCcccccccccccCCC--
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH-- 83 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIae------ktGIP--peqQRLIF~GKvLkDdkTLsdYGIkdGs-- 83 (731)
...+.|.|+||+++|++++|+|++++||.+||++|++ ++++| +++|||||.||+|+|+++|++|+|++++
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 92 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3456799999999999999999999999999999999 77884 8999999999999999999999999766
Q ss_pred EEEEeeecCCC
Q 004778 84 TLHMVVRQPVP 94 (731)
Q Consensus 84 TIhLVlRl~gg 94 (731)
+|||+++...+
T Consensus 93 tlhlv~r~~~~ 103 (125)
T 2gow_A 93 VMHLVARETLP 103 (125)
T ss_dssp EEEEEECSCCS
T ss_pred EEEEEecCCCC
Confidence 89999998754
No 58
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.58 E-value=2.9e-15 Score=129.96 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=72.1
Q ss_pred CCCcEEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCcccccccccccCCCEEEEeee
Q 004778 15 SETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tL-eVdpsdTV~dLKekIaektGIPpeqQRLI---F~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
...+|+|+||+ .|++|.| +|++++||.+||++|+++++||+++|||+ |+||.|+|+.+|++|+|++|++|||+..
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 44679999997 7899999 99999999999999999999999999999 9999999999999999999999999976
Q ss_pred cC
Q 004778 91 QP 92 (731)
Q Consensus 91 l~ 92 (731)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 59
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=3.7e-15 Score=133.29 Aligned_cols=79 Identities=27% Similarity=0.334 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCccccccccccc
Q 004778 16 ETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYHVE 80 (731)
Q Consensus 16 ~~tMqItVKtLdG---Kt~tLeVd--------p-sdTV~dLKekIaekt--GIPpeq-QRLIF~GKvLkDdkTLsdYGIk 80 (731)
...|+|+||+.++ +++.|+|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|++|+|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4569999999998 89999954 4 499999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEeeecCCC
Q 004778 81 DGHTLHMVVRQPVP 94 (731)
Q Consensus 81 dGsTIhLVlRl~gg 94 (731)
++++|||+++.+..
T Consensus 90 ~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 90 PGSTVHVLRKSWSG 103 (107)
T ss_dssp TTCEEEEEESSCCS
T ss_pred CCCEEEEEeCCCCC
Confidence 99999999987653
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.58 E-value=1.9e-15 Score=139.58 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=64.9
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCccccccccccc-------CCCEEEEeee
Q 004778 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIk-------dGsTIhLVlR 90 (731)
|.++|+...++ ++.|+|++++||.+||++|+.++|||+++|||+|+||+|+|+++|++|+|+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34444444455 689999999999999999999999999999999999999999999999999 7999999999
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=6e-15 Score=130.07 Aligned_cols=76 Identities=21% Similarity=0.393 Sum_probs=71.1
Q ss_pred CCCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 15 SETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~-tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
...+|+|+||+ .|++| .|+|++++||.+||++|++++|||+++|||+|+||.|+|+ +|++|+|+++++|||+....
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 44679999997 68999 6999999999999999999999999999999999999999 99999999999999998755
No 62
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=5.1e-15 Score=138.02 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=73.4
Q ss_pred CCCCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCCC--CCeEEEeCCeecCcccccccccccCC---
Q 004778 14 SSETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIA-----SVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG--- 82 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~-tLeVdpsdTV~dLKekIa-----ektGIPp--eqQRLIF~GKvLkDdkTLsdYGIkdG--- 82 (731)
.-++.|+|+||+++|+++ .+++++++||.+||++|+ +++++|+ ++|||||.||.|+|+++|++|+|+++
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 345789999999999988 699999999999999994 5667887 89999999999999999999999988
Q ss_pred ---CEEEEeeecCCC
Q 004778 83 ---HTLHMVVRQPVP 94 (731)
Q Consensus 83 ---sTIhLVlRl~gg 94 (731)
.||||++++.++
T Consensus 92 ~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 92 GAVTTMHVIIQAPVT 106 (126)
T ss_dssp TCCEEEEEEECCCSS
T ss_pred CCcEEEEEEeccCCc
Confidence 789999998864
No 63
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.57 E-value=3.9e-15 Score=146.86 Aligned_cols=78 Identities=36% Similarity=0.493 Sum_probs=75.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
-.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|++|+|+++|++|+|+++++|||++++.++
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999885
No 64
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=134.17 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=66.0
Q ss_pred CCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCcccccccc--cccCCCEEEE
Q 004778 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (731)
Q Consensus 14 ~s~~tMqItVKtLdGK--t~tLeVdpsdTV~dLKekIaek-tGIP-peqQRLIF~GKvLkDdkTLsdY--GIkdGsTIhL 87 (731)
.+...|+|+||+++++ ++.|+|++++||.+||++|+++ .++| +++|||||+||+|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456799999999998 6789999999999999999986 4666 4999999999999999999999 9999999998
Q ss_pred e
Q 004778 88 V 88 (731)
Q Consensus 88 V 88 (731)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.57 E-value=3.6e-15 Score=137.72 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=67.3
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccC-------CCEEEEeee
Q 004778 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkd-------GsTIhLVlR 90 (731)
|.|+|+...+| ++.++|++++||.+||++|+.++|||+++|||||.||+|+|+++|++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 55666665556 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred c
Q 004778 91 Q 91 (731)
Q Consensus 91 l 91 (731)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=141.33 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=71.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
..|.|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|.+|+|++|++|||++|++++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-15 Score=135.23 Aligned_cols=75 Identities=37% Similarity=0.669 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
...|.|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 3568899998 89999999999999999999999999999999999999999999999999999999999999864
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.1e-14 Score=131.68 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.4
Q ss_pred CcEEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEE
Q 004778 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (731)
Q Consensus 17 ~tMqItVKtL----------dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIh 86 (731)
..|+|+|+.. +|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688999886 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 004778 87 MVVRQPVP 94 (731)
Q Consensus 87 LVlRl~gg 94 (731)
|++++.++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999875
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.2e-14 Score=133.59 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=74.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998764
No 70
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=1.1e-14 Score=132.06 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccc-cCCCEEEEe
Q 004778 12 AESSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMV 88 (731)
Q Consensus 12 se~s~~tMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGI-kdGsTIhLV 88 (731)
....+-.|+|+|+...+ .+++|+|++++||.+||++|++++|||+++|||+|+||.|+|+++|.+||| ++|++|||+
T Consensus 18 ~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp --CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred CCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 33446678999999875 689999999999999999999999999999999999999999999999999 599999999
Q ss_pred eecC
Q 004778 89 VRQP 92 (731)
Q Consensus 89 lRl~ 92 (731)
+-..
T Consensus 98 l~~~ 101 (105)
T 4dbg_A 98 LLSA 101 (105)
T ss_dssp ECCC
T ss_pred EEec
Confidence 8643
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.55 E-value=4e-16 Score=143.55 Aligned_cols=77 Identities=36% Similarity=0.538 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998763
No 72
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=132.58 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=74.4
Q ss_pred CCCCCcEEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 13 ESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 13 e~s~~tMqItVK-tLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+-.+..|.|+|+ ...++.++++++++.||.+||++|+++.++|+++|||+|+||.|+|+.+|.+|||++|+||||+++.
T Consensus 10 ~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 10 SVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 344566888888 6578899999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 004778 92 PV 93 (731)
Q Consensus 92 ~g 93 (731)
..
T Consensus 90 ~~ 91 (118)
T 2daf_A 90 TN 91 (118)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=3.6e-14 Score=122.06 Aligned_cols=74 Identities=31% Similarity=0.503 Sum_probs=67.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
..++.+.++ ++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 10 ~~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 10 HSTIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CCcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 345665554 48999999999999999999999999999999999999999999999999999999999999874
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.49 E-value=2.4e-15 Score=143.67 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp 95 (731)
|+|+||+++|+++.|+|++++||.+||++|+++++||+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998874
No 75
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=124.05 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCcccccccccccCCCEEEEeeecCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
..|.++++.+.|++|.|+|++++||.+||++|++++|||+++|||+| .|+ |+|+++|++|+|++|++|||+++...
T Consensus 7 ~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred cceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 35777777779999999999999999999999999999999999996 455 99999999999999999999987544
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.48 E-value=3e-14 Score=152.88 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=72.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCcccccccccccCCCEE-EEeee
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVR 90 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIae---ktGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTI-hLVlR 90 (731)
.+.+|+|+||+++|++|.|+|++++||.+||++|++ +++|++++|||||+||+|+|+++|++|+|+++++| ||++|
T Consensus 4 ~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp --CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 346799999999999999999999999999999999 67799999999999999999999999999999999 66666
Q ss_pred cCCC
Q 004778 91 QPVP 94 (731)
Q Consensus 91 l~gg 94 (731)
.+++
T Consensus 84 ~~~~ 87 (368)
T 1oqy_A 84 TKAG 87 (368)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6554
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3e-13 Score=119.71 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=68.0
Q ss_pred CCCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CcccccccccccCCCE
Q 004778 13 ESSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHT 84 (731)
Q Consensus 13 e~s~~tMqItVKtLdGK--t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~--GK---vL-kDdkTLsdYGIkdGsT 84 (731)
-.....|.|+|++..++ .++++|++++||.+||++|+.++|||+++|||+|. |+ .| +|+++|++|+|++|++
T Consensus 10 ~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred cCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCE
Confidence 34577899999987654 88999999999999999999999999999999998 55 44 8999999999999999
Q ss_pred EEEe
Q 004778 85 LHMV 88 (731)
Q Consensus 85 IhLV 88 (731)
|||+
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 78
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=1.1e-13 Score=120.35 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.6
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCcccccccccccCCCEEEEe
Q 004778 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 18 tMqItVKt--LdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF-------~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
.++|.|.. .+.+.+.+++++++||.+||++|+.++|||+++|||+| .|+.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 35566654 35577889999999999999999999999999999997 4889999999999999999999999
Q ss_pred eecC
Q 004778 89 VRQP 92 (731)
Q Consensus 89 lRl~ 92 (731)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7654
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=119.59 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCcEEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEeC--CeecCcccccccccccCCCEEEE
Q 004778 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIASV-TGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~--tL-eVdpsdTV~dLKekIaek-tGIPpeqQRLIF~--GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
-.+|+|+||++.|+++ .| +|++++||.+||++|+++ .++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4459999999988775 58 999999999999999994 8999999999976 99999999999999999999876
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=2.9e-13 Score=142.32 Aligned_cols=79 Identities=35% Similarity=0.545 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
.....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|++
T Consensus 229 ~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 229 GITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999863
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=4.7e-13 Score=119.95 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCccccccccccc
Q 004778 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVd-psdTV~dLKekIaektGIPpeqQRLIF~GK-----------v----LkDdkTLsdYGIk 80 (731)
..|.|+||+.+|+. .|+|+ +++||.+||++|+++++||+++|||+|.|+ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred CCCEEEEeeecC
Q 004778 81 DGHTLHMVVRQP 92 (731)
Q Consensus 81 dGsTIhLVlRl~ 92 (731)
+|++|||+....
T Consensus 85 ~G~~L~l~~~~~ 96 (107)
T 1wf9_A 85 HGSMVYLAYEGE 96 (107)
T ss_dssp TTCEEECCCSSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=1e-12 Score=117.02 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe---e----cCcccccccccccCCCEE
Q 004778 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTL 85 (731)
Q Consensus 15 s~~tMqItVKtLdG--Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK---v----LkDdkTLsdYGIkdGsTI 85 (731)
.+..+.|+|++... +.++++|++++||.+||++|+.++|||+++|||+|.|+ . ++|+++|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45668899987544 47899999999999999999999999999999999883 3 489999999999999999
Q ss_pred EEeee
Q 004778 86 HMVVR 90 (731)
Q Consensus 86 hLVlR 90 (731)
||+-.
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99853
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.1e-12 Score=115.95 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
....|+|+||+.+|+.+.++|.+++++..||++++++.+++++++||+|.|+.|++++|+++|+++++++|+|++++.++
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.4e-12 Score=114.19 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=66.8
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCcccccccccccCCCEEEE
Q 004778 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 16 ~~tMqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G---Kv----LkDdkTLsdYGIkdGsTIhL 87 (731)
...|.|+|++.... .++++|++++||.+||++|+.++|||+++|||+|.| +. |+|+++|.+|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 34589999986543 689999999999999999999999999999999987 43 58999999999999999999
Q ss_pred eeec
Q 004778 88 VVRQ 91 (731)
Q Consensus 88 VlRl 91 (731)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 85
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.34 E-value=8.2e-14 Score=137.73 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=0.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ggp~ 96 (731)
|+|+||+++|+++.|+|++++||.+||++|+++++||+++|||+|+|++|+|+.+|+ +++||||++|+.++..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 899999999999999999999999999999999999999999999999999999998 8999999999987643
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=3.5e-12 Score=116.85 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.2
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCcccccccccccCCCEEEEe
Q 004778 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 17 ~tMqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G---Kv----LkDdkTLsdYGIkdGsTIhLV 88 (731)
..|.|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4689999986543 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred eecC
Q 004778 89 VRQP 92 (731)
Q Consensus 89 lRl~ 92 (731)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 8543
No 87
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=1.2e-11 Score=111.44 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
.....|.|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|+++++++|+|++++.+
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004778 94 PS 95 (731)
Q Consensus 94 gp 95 (731)
+.
T Consensus 100 G~ 101 (104)
T 1wz0_A 100 GP 101 (104)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 88
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.29 E-value=8.7e-12 Score=109.78 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
.....|.|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+.+|++++|++|++++++.+
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998865
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.2e-11 Score=108.85 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
...|.|+||+.+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+++|++++|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998875
No 90
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.25 E-value=2.6e-11 Score=110.48 Aligned_cols=81 Identities=14% Similarity=0.278 Sum_probs=76.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
.....|.|+|++.+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+++|+++++++|+|++.+.+
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 004778 94 P 94 (731)
Q Consensus 94 g 94 (731)
+
T Consensus 102 g 102 (110)
T 2k8h_A 102 G 102 (110)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.23 E-value=3.4e-11 Score=109.16 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.......|.|+|++ +|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.+++|.++|+++++++|++++++
T Consensus 25 ~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 25 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 34456779999999 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 004778 92 PV 93 (731)
Q Consensus 92 ~g 93 (731)
.+
T Consensus 104 ~G 105 (106)
T 2eke_C 104 IG 105 (106)
T ss_dssp --
T ss_pred cc
Confidence 65
No 92
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-11 Score=106.40 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=64.8
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---cccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLe-VdpsdTV~dLKekIaektGIPpeqQRLIF~--GKvLk---DdkTLsdYGIkdGsTIhLVlRl 91 (731)
|+|+||+.+|+. .++ |++++||.+||++|+++++|++++|||+|+ +|.|+ |+++|++|||++|++|||....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 789999999965 477 999999999999999999999999999987 48874 6799999999999999998664
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.22 E-value=1.1e-11 Score=130.77 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=69.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCcccccccccccCCCEEEEeeecC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI---F~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
..+|+|+||+ .|++|.|+|++++||.+||++|++++|||+++|||+ |+||+|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 4569999997 799999999999999999999999999999999999 899999999999999999999999996543
No 94
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.22 E-value=4e-11 Score=100.39 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=69.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
.|.|+|++.+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|.++|++++|++|++++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999974
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.19 E-value=8.3e-11 Score=100.46 Aligned_cols=74 Identities=11% Similarity=0.294 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEe
Q 004778 15 SETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 15 s~~tMqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
....|.|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 346699999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.02 E-value=8.6e-10 Score=96.63 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=66.2
Q ss_pred CCcEEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------e-ec-CcccccccccccCCCE
Q 004778 16 ETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------K-VL-KDDQLLSAYHVEDGHT 84 (731)
Q Consensus 16 ~~tMqItVKt---LdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G------K-vL-kDdkTLsdYGIkdGsT 84 (731)
...+.|+|++ .+++.+.+.+.+++||.+||.+|+..+|+|+..|||+|.+ . .| +|.++|.+|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 4568888886 4678899999999999999999999999999999999873 2 25 6779999999999999
Q ss_pred EEEeeec
Q 004778 85 LHMVVRQ 91 (731)
Q Consensus 85 IhLVlRl 91 (731)
|||....
T Consensus 87 I~V~d~~ 93 (97)
T 1wjn_A 87 LLVRWSG 93 (97)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998754
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=1.3e-08 Score=93.78 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
...|.|+|+..+|+.+.+.|.+++++..|++.++++.|++++.+||+|.|+.|.++.|.++|++++|++|++++.+-
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=4.4e-08 Score=97.70 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=76.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
.....|.|+|+. +|+.+.+.|.+++++..||+.++++.|++++.+||+|.|+.|.++.|.++|++++|++|++++.+.+
T Consensus 25 ~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 446779999985 8999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004778 94 PSS 96 (731)
Q Consensus 94 gp~ 96 (731)
+..
T Consensus 104 g~k 106 (200)
T 3pge_A 104 GGG 106 (200)
T ss_dssp CC-
T ss_pred CcC
Confidence 653
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.68 E-value=2.9e-08 Score=98.77 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=74.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
.....|.|+|+. +|+.+.+.|.+++++..||+.++++.|++++.+||+|+|+.|.+++|.++|+++||++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 346779999985 8999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 004778 94 PS 95 (731)
Q Consensus 94 gp 95 (731)
+.
T Consensus 132 G~ 133 (207)
T 3tix_A 132 GL 133 (207)
T ss_dssp TG
T ss_pred CC
Confidence 63
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.38 E-value=4.2e-08 Score=98.79 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=1.1
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.......|.|+| ..+|+.+.++|.+++++..||+.++++.|++++.+|++|+|+.|.+++|.++|+++||++|++++.+
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 344567799999 7789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004778 92 PVPS 95 (731)
Q Consensus 92 ~ggp 95 (731)
.++.
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 8864
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.24 E-value=4.9e-07 Score=77.65 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=60.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CcccccccccccCCCEEEEe
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKv---L--kDdkTLsdYGIkdGsTIhLV 88 (731)
..|.|.||+.+| ++.|+|++++||.+||++|+++++++.+.|.|++.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 348899999876 77788999999999999999999999998887765443 3 47789999999999999874
No 102
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.20 E-value=5.8e-06 Score=73.96 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEe
Q 004778 13 ESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 13 e~s~~tMqItVKtLdGK-t~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLV 88 (731)
......|.|+|+..+++ .+.+.|.+++++..|.+..+++.+++++..||+|.|+.|.++.|..++++++|++|.++
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34567799999998885 88999999999999999999999999999999999999999999999999999999885
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.09 E-value=1.5e-05 Score=69.31 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
..|.+.++......+.+.|.++.+|.+|-+..+.+.+|+++ ..||.|.|..|+.+.++.+|+++|++.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45788888888888999999999999999999999999999 99999999999999999999999999999986
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.08 E-value=9.4e-06 Score=80.71 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=75.3
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
......|.|+|+. +++.+.++|..++++..||+..+++.|++++++||+|.|+.+.++++..++.++++++|+++.++.
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 3455779999998 788899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 004778 93 VPS 95 (731)
Q Consensus 93 ggp 95 (731)
++.
T Consensus 95 Gg~ 97 (209)
T 3uf8_A 95 GGS 97 (209)
T ss_dssp TCC
T ss_pred ccc
Confidence 754
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.91 E-value=1.4e-06 Score=93.56 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
...+...|.|+|+. +|+.+.++|.+++++..||+.++++.|++++.+|++|+|+.|.++.|.+++++++|++|++++.+
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 33456679999998 78888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 004778 92 PVP 94 (731)
Q Consensus 92 ~gg 94 (731)
.++
T Consensus 94 ~g~ 96 (360)
T 3ix6_A 94 IGG 96 (360)
T ss_dssp ---
T ss_pred Cch
Confidence 874
No 106
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.88 E-value=1.8e-06 Score=92.29 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
....|.|+|+. +++.+.+.|.+++++..||+.++++.|++...+|++|+|+.|.+++|.+++++++|++|++++.+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 45668888887 78888899999999999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 004778 95 S 95 (731)
Q Consensus 95 p 95 (731)
.
T Consensus 106 ~ 106 (389)
T 4da1_A 106 E 106 (389)
T ss_dssp -
T ss_pred c
Confidence 3
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.83 E-value=9.8e-05 Score=66.14 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 12 se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
..+....|.|+|+. +|....+.|..++....|.+..+++.|+.++..|++|.|..+.++.|-.+++++++++|.+++-.
T Consensus 15 ~~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 15 LPETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CCSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 34455669999996 78999999999999999999999999999999999999999999999999999999999998743
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.70 E-value=0.00011 Score=65.66 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=52.2
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--Ccccccccccc-cCCCEEEEee
Q 004778 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHV-EDGHTLHMVV 89 (731)
Q Consensus 21 ItVKtL-dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvL--kDdkTLsdYGI-kdGsTIhLVl 89 (731)
|+|-.+ .++.+.+.|.+++||..||++|++++|||+++|+|+|.||.| +.++.-..|-- ....-|.|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 444444 467788999999999999999999999999999999999865 44555555543 3344555543
No 109
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.35 E-value=0.00023 Score=66.70 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=59.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 004778 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (731)
Q Consensus 20 qItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe-------------------------------------qQRLI 62 (731)
.|+|+.+||+..++.|+.+.+|.+++..|+.+.||+.. ++||.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 34443
Q ss_pred e--CCeecCcccccccccccCCCEEEEee
Q 004778 63 C--RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 63 F--~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
. ....|+++++|.++||.++++|.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 3 22567889999999999999976644
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.29 E-value=0.00055 Score=59.59 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=60.7
Q ss_pred CcEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCcccccccccccCCCEEEE
Q 004778 17 TTIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 17 ~tMqItVKt--LdGKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIF~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
+-|.|+|.. -.++.|.|++....||..|++.+.+.+++.. ...|+.-++..|.+++.|++|+|.+|+.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 346677765 4689999999999999999999999988665 2357788899999999999999999999876
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.01 E-value=0.0013 Score=58.40 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=70.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCC
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~g 93 (731)
-|.|.|-..+++..++.|.+++++.++-++.++++|+.+++-.|.|++|.|+-...+.-.||.++.+|.|+.+...
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999976543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.90 E-value=0.0045 Score=52.92 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=63.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec---CcccccccccccCCCEEEEee
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL---KDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvL---kDdkTLsdYGIkdGsTIhLVl 89 (731)
.+...+|.||..+|+.+.-....++||.+|+..|.. .+.+....+|+ |-.|.| +.+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 456789999999999998899999999999999988 56777888888 557888 346899999999999988754
Q ss_pred e
Q 004778 90 R 90 (731)
Q Consensus 90 R 90 (731)
+
T Consensus 83 k 83 (84)
T 3qx1_A 83 K 83 (84)
T ss_dssp C
T ss_pred c
Confidence 3
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.78 E-value=0.0099 Score=53.64 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--c-ccccccccccCCCEEEEe
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--D-DQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk--D-dkTLsdYGIkdGsTIhLV 88 (731)
......+|.||..+|+.+.-....++||.+|++.|....+.+.....|+ |--|.|. | +++|+++|+.+..+|++.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 3345689999999999999999999999999999999887777777787 5578885 3 589999999998888877
Q ss_pred eecC
Q 004778 89 VRQP 92 (731)
Q Consensus 89 lRl~ 92 (731)
....
T Consensus 89 ~~~~ 92 (109)
T 2dzk_A 89 PAGR 92 (109)
T ss_dssp CCSS
T ss_pred ECcC
Confidence 6543
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.61 E-value=0.0002 Score=64.48 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=33.8
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.++|+++++|..||.+|+ ++|+|+++|||||+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 5678899999999999999999 99999999999987
No 115
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.48 E-value=4.6e-05 Score=67.95 Aligned_cols=38 Identities=5% Similarity=-0.064 Sum_probs=35.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 29 RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 578999999999999999999999 99999999999984
No 116
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.39 E-value=0.00053 Score=67.99 Aligned_cols=43 Identities=5% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 101 qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
+|++ .+|++++++|++++||.+||.+|+ .+|||+++|||||+.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~G 47 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNG 47 (189)
T ss_dssp ----------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecC
Confidence 3444 568889999999999999999999 999999999999964
No 117
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.24 E-value=7.5e-05 Score=63.31 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=37.9
Q ss_pred cCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 80 EDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 80 kdGsTIhLVlRl~ggp~ss~~qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++++++++++.+. .+.+++ ..|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 3 ~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 3 EPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp ------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 44556666654332 344444 567888899999999999999999 89999999999974
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.14 E-value=0.017 Score=53.45 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--Cc-ccccccccccCCCEEEEee
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--KD-DQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvL--kD-dkTLsdYGIkdGsTIhLVl 89 (731)
.....+|.||..+|+.+.-.+..++||.+|...|... +.+.....|+ |-.|.| .| +++|.++++.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3567899999999999999999999999999999887 7777778887 557888 33 6899999999888887764
Q ss_pred e
Q 004778 90 R 90 (731)
Q Consensus 90 R 90 (731)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 119
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.00032 Score=62.10 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=36.3
Q ss_pred ccccccccccCCCEEEEeeecCCCCCCCCCCCCC-CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 71 dkTLsdYGIkdGsTIhLVlRl~ggp~ss~~qI~v-~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
...+++|.| ++|.+|.++..- .+.+++ ..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCC--CcceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 457888988 567766654321 122223 367888899999999999999999 89999999999975
No 120
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.72 E-value=0.00033 Score=63.06 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=35.6
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.++|.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 557888999999999999999999 99999999999987
No 121
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.00044 Score=60.23 Aligned_cols=39 Identities=8% Similarity=-0.102 Sum_probs=33.9
Q ss_pred CCCCCcccccc--cCCccccccccc-c-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~--psdTVesVK~~I-q-~EGIPpdqQRLIfav 143 (731)
..++.+.+.|+ +++||..||.+| + ++|+|+++|||||+.
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~G 51 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKG 51 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETT
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECC
Confidence 55777778755 999999999999 7 899999999999863
No 122
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.58 E-value=0.062 Score=48.28 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=61.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--cccccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI--F~GKvLk--DdkTLsdYGIkdGsTIhLVlR 90 (731)
....+|.||..+|+.+.-....++||.+|..-|..+ +..+...+|+ |-.|.|. .+++|.++||.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 467999999999999988999999999999999965 5556677886 5578885 468999999999888877654
No 123
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.28 E-value=0.045 Score=50.63 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCc-ccccccccccCCCEE
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaekt-GIPpeqQRLI--F~GKvLkD-dkTLsdYGIkdGsTI 85 (731)
.....+|.||..||+.+.-.+..++||.+|++.|.... +.......|+ |-.|.|+| +++|.++|+.+..+|
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 44568999999999999999999999999999998863 3445667777 55788865 589999999885444
No 124
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=95.22 E-value=0.00076 Score=62.49 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=31.7
Q ss_pred CcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.++|++++||..||.+|+ ++|||+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 56789999999999999999 99999999999975
No 125
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.15 E-value=0.0035 Score=51.20 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.++++|..+|.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 457778899999999999999999 89999999999986
No 126
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.14 E-value=0.042 Score=48.64 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=61.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCcccccccccccC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVED 81 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~---GKvLkDdkTLsdYGIkd 81 (731)
++.++++.|....-++..++|++..++.+|--.|++|+.+.++.-.|.-. +..|+-+++|.||||++
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 45889999999988899999999999999999999999999999888754 56899999999999987
No 127
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.75 E-value=0.003 Score=54.72 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.8
Q ss_pred CCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 108 ~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+.....+++++||+.||.+|+ ++|||+++|||+|.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 344577899999999999999 99999999999964
No 128
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.73 E-value=0.0018 Score=57.09 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=32.5
Q ss_pred CCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 108 ~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 467789999999999999999 99999999999986
No 129
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=94.65 E-value=0.00069 Score=56.10 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|++++||..||.+|+ .+|+|+++|||+|+
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 457788899999999999999999 89999999999975
No 130
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.61 E-value=0.052 Score=57.32 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=74.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCcccccccccccCCCEEEE
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektG----IPpeqQRLIF------~GKvLkDdkTLsdYGIkdGsTIhL 87 (731)
.+.++|... +.+.++.+++++||.++..+|.++.. .++++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777765 67788999999999999999988864 3566667766 456789999999999999999888
Q ss_pred eeecCCCCCCCCCCCCCCCCCCcccccccCCcccccccccc
Q 004778 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR 128 (731)
Q Consensus 88 VlRl~ggp~ss~~qI~v~tG~titl~V~psdTVesVK~~Iq 128 (731)
..+... ..+.-.+|......|+...++..+-..+.
T Consensus 82 ~~~~~~------~~V~l~dg~~~~~~vd~~tt~~el~~~v~ 116 (371)
T 3ivf_A 82 RKKQRP------LKIRMLDGTVKTIMVDDSKTVTDMLMTIC 116 (371)
T ss_dssp EECEEE------EEEECTTSCEEEEEEETTSBHHHHHHHHH
T ss_pred cCceeE------EEEECcCCCEEEEEECCCCCHHHHHHHHH
Confidence 654321 11222456666677777766655444433
No 131
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.59 E-value=0.0061 Score=55.80 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|++++||..||.+|+ ..|||+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 467788899999999999999999 89999999999985
No 132
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.55 E-value=0.0011 Score=61.34 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=31.9
Q ss_pred CcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.++|++++||..||.+|+ ++|||+++|||||+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 47789999999999999999 99999999999976
No 133
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.44 E-value=0.0023 Score=56.83 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.2
Q ss_pred CCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 108 ~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 456789999999999999999 99999999999984
No 134
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.38 E-value=0.0016 Score=58.37 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIf 141 (731)
.+|+.+.++|+++++|+.||.+|+ ++|||+++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 457788899999999999999999 9999999999853
No 135
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=94.36 E-value=0.00083 Score=57.04 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.++++|..||.+|+ +.|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 456778899999999999999999 89999999999985
No 136
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.29 E-value=0.00088 Score=57.32 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|++++||+.||.+|+ .+|+|+++|||+|+
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 99999999999986
No 137
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=94.27 E-value=0.0079 Score=57.41 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
.+|+.+.+.|.+++||..||..|+ .+|||+++|||+|..
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (152)
T ss_dssp ----------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 457788899999999999999999 899999999999864
No 138
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.07 E-value=0.0017 Score=54.44 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 456778899999999999999999 89999999999985
No 139
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.95 E-value=0.26 Score=45.35 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=52.1
Q ss_pred CcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----CeecCcc-----------
Q 004778 17 TTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD----------- 71 (731)
Q Consensus 17 ~tMqItVKtLd--GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF~----GKvLkDd----------- 71 (731)
.+|.|+|-..+ +..+.+.|-..+||.++|+||.+.. ++| +++..|-+. |+.|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 45677776543 4567888889999999999997652 333 355667653 4556541
Q ss_pred --cccccccccCCCEEEEeee
Q 004778 72 --QLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 72 --kTLsdYGIkdGsTIhLVlR 90 (731)
.||..|+|.||.+|-|+.+
T Consensus 90 rLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEEC
T ss_pred EecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 140
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.85 E-value=0.19 Score=47.82 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=52.6
Q ss_pred CcEEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEe----CCee-cCcc------
Q 004778 17 TTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC----RGKV-LKDD------ 71 (731)
Q Consensus 17 ~tMqItVKtLd------GKt~tLeVdpsdTV~dLKekIaekt--GIPp------eqQRLIF----~GKv-LkDd------ 71 (731)
.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++|. ++.-|-+ .|++ |.|.
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 55777775542 2468899999999999999998763 3433 3445544 2333 5442
Q ss_pred -------cccccccccCCCEEEEeeecC
Q 004778 72 -------QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 72 -------kTLsdYGIkdGsTIhLVlRl~ 92 (731)
.||+.|+|.||.+|-|+.+..
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred cCCceeecchhccCCCCCCEEEEEECCC
Confidence 289999999999999988754
No 141
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.0029 Score=56.21 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.++++|..||.+|+ ..|+|+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457778899999999999999999 99999999999986
No 142
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=93.81 E-value=0.0041 Score=54.24 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
.+|+.+.+.|.++++|..||.+|+ ++|||+++|||+|+.
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~G 68 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG 68 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECC
Confidence 456778899999999999999999 999999999999963
No 143
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=93.79 E-value=0.0019 Score=55.27 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 567888899999999999999999 89999999999985
No 144
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=93.69 E-value=0.0017 Score=55.60 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 456778899999999999999999 89999999999985
No 145
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.42 E-value=0.37 Score=48.47 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.2
Q ss_pred EEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-CC----eecCc-ccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-RG----KVLKD-DQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdGK--t~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF-~G----KvLkD-dkTLsdYGIkdGsTIhLVl 89 (731)
+.|++...... .+++.++..+||.+||+++++.++|+.+ +.||.. .. ..|.| +++|.+++|.++..|.|=+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 44555443322 3456789999999999999999999997 688863 32 35665 5899999999999999998
Q ss_pred ecCCC
Q 004778 90 RQPVP 94 (731)
Q Consensus 90 Rl~gg 94 (731)
+...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 87654
No 146
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.37 E-value=0.0033 Score=54.14 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=32.3
Q ss_pred CCCCccc-ccccCCcccccccccc-CCCCCcchhHHH
Q 004778 106 TSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (731)
Q Consensus 106 tG~titl-~V~psdTVesVK~~Iq-~EGIPpdqQRLI 140 (731)
.++.+.+ .|.++++|..||.+|+ .+|||+++|||+
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 5667778 9999999999999999 999999999999
No 147
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.21 E-value=0.0027 Score=53.30 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..++.+.+.|++++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346777889999999999999999 89999999999975
No 148
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.94 E-value=0.43 Score=47.51 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.7
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCc-ccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdG--Kt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLI--F-~G--KvLkD-dkTLsdYGIkdGsTIhLVl 89 (731)
+.|++..... ..+++.++..+||.+|++++.+.++|+.+ +.||- | .+ ..|+| +++|.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 3445544332 23567889999999999999999999997 68875 3 23 35655 5799999999999999988
Q ss_pred ecCCC
Q 004778 90 RQPVP 94 (731)
Q Consensus 90 Rl~gg 94 (731)
|...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 87654
No 149
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=92.88 E-value=0.0083 Score=51.13 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+|+.+.+.|.+++||+.||.+|+ .+|+|+++|||+|.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 45677889999999999999999 99999999999975
No 150
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=92.83 E-value=0.0029 Score=52.29 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.++|.++++|..+|..++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 456778899999999999999999 99999999999886
No 151
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.82 E-value=0.0057 Score=56.18 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCcccccccccc-------CCCC--CcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-------~EGI--PpdqQRLIfav 143 (731)
.+|++++++|++++||+.||.+|+ ++|+ |+++|||||+.
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G 71 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC
Confidence 457889999999999999999998 3575 69999999875
No 152
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=92.81 E-value=0.0024 Score=55.34 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=36.2
Q ss_pred CCCCCCCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 100 ~qI~v~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+++++.+++.+.+.|+++++|+.||.+|+ +.|+|+++|||+|.
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 44444336777889999999999999999 89999999999975
No 153
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=92.77 E-value=0.0045 Score=55.02 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=32.0
Q ss_pred CCCCCccc--ccccCCccccccccc-c-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl--~V~psdTVesVK~~I-q-~EGIPpdqQRLIfav 143 (731)
..|+.+.+ .|.+++||+.||.+| + .+|+|+++|||||+.
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~G 69 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKG 69 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETT
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECC
Confidence 34555556 556999999999999 7 889999999999863
No 154
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.47 E-value=0.0032 Score=55.24 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=32.4
Q ss_pred CCCc-ccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~ti-tl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+ .++|.++++|..||.+|+ .+|||+++|||+|.
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 4567 489999999999999999 99999999999964
No 155
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.38 E-value=0.0068 Score=50.14 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++.+.+.|.+++||..||..|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 12 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45677889999999999999999 89999999999975
No 156
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.38 E-value=0.0067 Score=52.15 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.3
Q ss_pred CcccccccCCcccccccccc-CC--CCCcchhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~E--GIPpdqQRLIfa 142 (731)
.+.+.|.+++||..||.+|+ .. |+|+++|||||+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 34556679999999999999 66 999999999986
No 157
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=92.27 E-value=0.0032 Score=51.79 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.2
Q ss_pred CCCCCc-ccc-cccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~ti-tl~-V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+ .++ |.++++|+.+|.+|+ .+|+|+++|||+|.
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346664 788 999999999999999 89999999999975
No 158
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=92.22 E-value=0.0044 Score=56.22 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=32.4
Q ss_pred CCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 108 ~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
..+++.|.+++||..+|.+|+ ++|||+++|||+|..
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~gg 73 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQ 73 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccC
Confidence 567889999999999999999 999999999988653
No 159
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.01 E-value=0.0055 Score=51.71 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=32.8
Q ss_pred CC-CCccc-ccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG-~titl-~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.| +.+.+ .|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 16 DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 45 56788 5999999999999999 89999999999975
No 160
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=91.95 E-value=0.0042 Score=53.11 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCCCC--CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 100 ~qI~v--~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
|++++ .+|+.+.+.|.+++||+.||.+|+ ..|+|++.|||+|.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 44444 567888899999999999999999 89999999999975
No 161
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=91.90 E-value=0.0058 Score=50.70 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 12 MGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 45667889999999999999999 89999999999985
No 162
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.0046 Score=53.83 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.++++|..||.+|+ ..|+|+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 457778899999999999999999 89999999999975
No 163
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.83 E-value=0.012 Score=54.97 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=33.4
Q ss_pred CCCCCc-ccccccCCccccccccc-----c-CCCCCc--chhHHHHHh
Q 004778 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSAV 143 (731)
Q Consensus 105 ~tG~ti-tl~V~psdTVesVK~~I-----q-~EGIPp--dqQRLIfav 143 (731)
.+|+.+ .+.+++++||++||.+| + ++|+|+ ++|||||+.
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~G 71 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAG 71 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETT
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECC
Confidence 456556 58999999999999999 6 899997 899999875
No 164
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=91.73 E-value=0.0096 Score=55.27 Aligned_cols=39 Identities=5% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCcccccccccc-------CCCCC--cchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-------~EGIP--pdqQRLIfav 143 (731)
.+|+++++.|++++||++||.+|+ ++|+| +++|||||+.
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~G 72 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 72 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECC
Confidence 457888999999999999999998 46884 8999999875
No 165
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=91.46 E-value=0.0049 Score=52.76 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 456777889999999999999999 89999999999985
No 166
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.41 E-value=0.01 Score=52.15 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.9
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.++|.+++||+.||.+|+ +.|||+++|||+|.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4677789999999999999999 99999999999975
No 167
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=91.38 E-value=0.0085 Score=53.28 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=29.1
Q ss_pred CcccccccCCcccccccccc-C-CCCCc-chhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-G-DGVPS-EISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~-EGIPp-dqQRLIfa 142 (731)
.+.+.|.+++||..||.+|+ + +|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 45788899999999999999 3 67775 99999986
No 168
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.26 E-value=0.0067 Score=53.70 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 356778899999999999999999 99999999999985
No 169
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=91.23 E-value=1.5 Score=36.09 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
.|+|+|... .....+++....||.+|.+++ +++++...+..+|+.+..+. -|++||.|.++--.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 488888774 344567788889999999876 56777778889999886654 57899999988543
No 170
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.13 E-value=1.4 Score=38.40 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=50.4
Q ss_pred CcEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCccccccccc
Q 004778 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (731)
Q Consensus 17 ~tMqItVKtLd------G-Kt~tLeVdpsdTV~dLKekIaektG-I----------PpeqQRLIF~GKvLkDdkTLsdYG 78 (731)
..|+|+||... | +...+++....||.+|++.+..+.. + ......+..+|+.+.. ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46999999874 3 4677888788999999999987641 1 1234567778877753 677
Q ss_pred ccCCCEEEEeee
Q 004778 79 VEDGHTLHMVVR 90 (731)
Q Consensus 79 IkdGsTIhLVlR 90 (731)
|++|+.|.++-.
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 899999988743
No 171
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.10 E-value=0.007 Score=52.40 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCCCCcccccccCCcccccccccc-C---CCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~---EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 346677889999999999999999 5 8999999999985
No 172
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.10 E-value=0.0078 Score=49.47 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.|+.+.+.|.+++||+.||.+|+ ..|+|++.|||+|.
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45667789999999999999999 89999999999975
No 173
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.08 E-value=0.0068 Score=52.84 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 35667789999999999999999 99999999999963
No 174
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=90.67 E-value=0.0059 Score=49.26 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.|+.+.+.|.+++||..+|.+|+ ..|+|++.|+|+|.
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 46677889999999999999999 89999999999875
No 175
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=90.60 E-value=0.0078 Score=57.93 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
.+|+.+.+.|.+++||..||.+|+ ++|+|+++|||+|+.
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 457788899999999999999999 899999999999863
No 176
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=90.60 E-value=0.0093 Score=51.96 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.5
Q ss_pred CcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+.+.|.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 56789999999999999999 89999999999975
No 177
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.56 E-value=0.014 Score=50.72 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred CcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46688999999999999999 99999999999985
No 178
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.48 E-value=0.52 Score=39.84 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=48.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
|+|+||....+...+++....||.+|-+ +.+++++.--+..+|+.+..+. +.+||+|.++--.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V 63 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLI 63 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEee
Confidence 7888888755556689999999998765 4889998888888999886555 2358888886433
No 179
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.02 E-value=0.59 Score=40.90 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCcccccccc--cccCCCEEEEe
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY--HVEDGHTLHMV 88 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK-----vLkDdkTLsdY--GIkdGsTIhLV 88 (731)
...|.|+|.+- -++.|+|.+..+..+|.++|.++.+++++..+|.|+.+ ++..+..|.+. .++++ .|.|.
T Consensus 3 ~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~ 79 (83)
T 1oey_A 3 HMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLW 79 (83)
T ss_dssp SSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEE
T ss_pred CCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEE
Confidence 34588888885 68999999999999999999999999999999999863 23333333322 23444 46666
Q ss_pred ee
Q 004778 89 VR 90 (731)
Q Consensus 89 lR 90 (731)
++
T Consensus 80 C~ 81 (83)
T 1oey_A 80 CE 81 (83)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 180
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=89.83 E-value=0.004 Score=55.57 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 35667789999999999999999 89999999999875
No 181
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.76 E-value=1.3 Score=41.67 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=51.0
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCc---------c--
Q 004778 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D-- 71 (731)
Q Consensus 18 tMqItVKt--LdGKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF~-G---K-vLkD---------d-- 71 (731)
++.|+|-. .++..+.+.|-..+||.++|+||.+.. ++| +++..|-+. | + .|.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 34444433 234567888889999999999997652 333 356667652 3 3 2543 1
Q ss_pred --cccccccccCCCEEEEeeec
Q 004778 72 --QLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 72 --kTLsdYGIkdGsTIhLVlRl 91 (731)
.||..|+|.||.+|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 37899999999999998764
No 182
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=89.62 E-value=0.015 Score=48.33 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCCCcccccccCCcccccccccc-C---CCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~---EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 346677889999999999999999 4 8999999999975
No 183
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=89.52 E-value=0.016 Score=52.05 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=43.6
Q ss_pred CEEEEeeecCCCCCCCCCCCCCCCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 83 sTIhLVlRl~ggp~ss~~qI~v~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|.|.++.+..... .....+|+.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~---~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDK---TEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSS---CSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCccc---cccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 467777776542110 0111568888899999999999999999 89999999999985
No 184
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=89.10 E-value=0.029 Score=55.38 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.++|++++||..||.+|+ .+|||+++|+|+|.
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 467888899999999999999999 89999999999975
No 185
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.05 E-value=0.018 Score=49.50 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=32.7
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.+.|.++++|..||.+|+ ..|+|+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5567789999999999999999 89999999999975
No 186
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=88.99 E-value=0.014 Score=50.48 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.|+.+.+.|.+++||..||.+|+ ..|+|++.|+|+|.
T Consensus 9 ~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 46667789999999999999999 89999999999985
No 187
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=88.77 E-value=0.024 Score=49.83 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.+.|.++++|..||.+|+ ..|+|++.|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 3456789999999999999999 89999999999875
No 188
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=88.69 E-value=0.024 Score=50.49 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=40.8
Q ss_pred CCCEEEEeeecCCCCCCCCCCCCCCCCCCccccccc-CCcccccccccc-CCCCCcchhHHHHH
Q 004778 81 DGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 81 dGsTIhLVlRl~ggp~ss~~qI~v~tG~titl~V~p-sdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.-..|.|.++.+.. .+|+.+.+.|.+ ++||..||.+|+ ..|||+++|+|+|.
T Consensus 24 ~~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 24 HPGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp CCSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 34456776665421 146677899998 999999999999 99999999999984
No 189
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=88.37 E-value=0.014 Score=49.70 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++.+.+.|.+++||+.||.+|+ ..|+|+++|||+|.
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45667789999999999999999 89999999999964
No 190
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.23 E-value=1 Score=41.75 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=51.5
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEe-CC---e-ecCc---------c
Q 004778 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC-RG---K-VLKD---------D 71 (731)
Q Consensus 17 ~tMqItVKtLd---GKt~tLeVdpsdTV~dLKekIaekt--GIPp------eqQRLIF-~G---K-vLkD---------d 71 (731)
.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++|. ++..|-+ .| + .|.| .
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 45667765433 3457788889999999999997652 3333 4556655 23 3 2433 2
Q ss_pred ----cccccccccCCCEEEEeeec
Q 004778 72 ----QLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 72 ----kTLsdYGIkdGsTIhLVlRl 91 (731)
.||..|+|.+|.+|-|+.|.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 46899999999999998765
No 191
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.10 E-value=0.02 Score=48.95 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCcccccccC-----Ccccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~ps-----dTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.+.|.++ .||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 44566788885 99999999999 89999999999975
No 192
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=87.77 E-value=0.013 Score=47.24 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=32.9
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++.+.+.|.++++|..+|..|+ ..|+|++.|+|+|.
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 45667789999999999999999 89999999999974
No 193
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=87.64 E-value=0.016 Score=47.12 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.+.|.++++|..||.+|+ ..|+|++.|||+|.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4566788999999999999999 89999999999975
No 194
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=87.61 E-value=0.019 Score=51.40 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.2
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346778899999999999999999 89999999999975
No 195
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.51 E-value=0.035 Score=51.02 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
++.+.+.|.+++||..||.+|+ +.|||+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5567789999999999999999 89999999999986
No 196
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.49 E-value=0.041 Score=47.59 Aligned_cols=32 Identities=9% Similarity=-0.123 Sum_probs=28.8
Q ss_pred cc-ccccCCcccccccccc--CCCCCcchhHHHHH
Q 004778 111 GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (731)
Q Consensus 111 tl-~V~psdTVesVK~~Iq--~EGIPpdqQRLIfa 142 (731)
.+ +|.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 36 8999999999999999 48999999999875
No 197
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=87.40 E-value=0.025 Score=51.00 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567788899999999999999999 89999999999975
No 198
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=87.28 E-value=0.044 Score=49.90 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=31.1
Q ss_pred CcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 109 titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 45678999999999999999 99999999999984
No 199
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=87.10 E-value=1.7 Score=35.95 Aligned_cols=69 Identities=7% Similarity=0.187 Sum_probs=46.2
Q ss_pred EEEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 19 MqItVKtLdG-Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
|.|+||.... +.-.+++ ...||.+|++.+..+.++.. ....+..+|+.+.+ .++-|++|+.|.++-...
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCC
Confidence 6788887642 1133666 56899999999986543322 44567778877543 356689999999985443
No 200
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.04 E-value=2.6 Score=37.17 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=42.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF~GK 66 (731)
+...|+|++.. +|..+.+.|+++.+..+|.++|.+.+++..++ ..|.|...
T Consensus 3 ~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 3 LGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 44568888877 57899999999999999999999999988654 67778764
No 201
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.92 E-value=4.5 Score=37.94 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=48.6
Q ss_pred CcEEEEEEe---CC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEeC-C---eec-------
Q 004778 17 TTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVL------- 68 (731)
Q Consensus 17 ~tMqItVKt---Ld------GKt~tLeVdpsdTV~dLKekIaek----tGIPp----eqQRLIF~-G---KvL------- 68 (731)
.++.|.|-. .. ...+.+.|-..+||.++|+||.+. .++|. +++.|-+. | ..|
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 456777665 32 246888999999999999999553 36654 33444431 2 222
Q ss_pred ---Ccc----cccccccccCCCEEEEee
Q 004778 69 ---KDD----QLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 69 ---kDd----kTLsdYGIkdGsTIhLVl 89 (731)
++. .||..|+|.||.+|-|+.
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 222 367889999999998764
No 202
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.55 E-value=0.01 Score=53.64 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=29.1
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQ 137 (731)
.+|+.+.+.|.+++||++||.+|+ ++|+|++.|
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 678889999999999999999999 889988543
No 203
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.46 E-value=0.046 Score=48.16 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.5
Q ss_pred cccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 110 itl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+.++|.++++|..||.+|+ ..|||+++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999985
No 204
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=86.28 E-value=1.3 Score=40.36 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=50.6
Q ss_pred CcEEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCccc---cc-
Q 004778 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (731)
Q Consensus 17 ~tMqItVKtLd------G--Kt~tLeVdp---sdTV~dLKekIaektGIPpeqQRLIF~-GK------vLkDdk---TL- 74 (731)
.+|+|+|+... + +.+.+++.. ..||.+|.+.|.+++ +..+-+|+.. |+ +|-|++ .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 55999999874 2 366788873 369999999998876 2223334322 32 232222 33
Q ss_pred -ccccccCCCEEEEeeecCCCC
Q 004778 75 -SAYHVEDGHTLHMVVRQPVPS 95 (731)
Q Consensus 75 -sdYGIkdGsTIhLVlRl~ggp 95 (731)
.+|-|++|+.|.++-...++.
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 358899999999987777653
No 205
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=86.04 E-value=0.052 Score=47.72 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.6
Q ss_pred cccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 110 itl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999975
No 206
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.98 E-value=5.1 Score=33.81 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=42.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C-----C-----CCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTG-V-----L-----SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-I-----P-----peqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
+...+++....||.+|++.+..++. + . ....++..+|+...+ ++-|++|+.|.++-...
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5677888878999999999987752 1 0 012567778877764 56688999999885443
No 207
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.55 E-value=1.8 Score=37.86 Aligned_cols=68 Identities=6% Similarity=0.034 Sum_probs=45.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdps-dTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
-...+|+|+| +|+.+. +... .||.+|.+++ +++++...+..+|+.+..+ ...++-|++||.|.++--.
T Consensus 16 ~~~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 16 HIGGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ------CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred CCCcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 3455677766 566544 5665 8999998876 5667777788899887543 3445679999999998644
No 208
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=84.02 E-value=0.034 Score=49.63 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
.....+.+.+.+.++|..||..|+ ++|||+++|+|+|..
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345567789999999999999999 999999999999876
No 209
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=83.87 E-value=0.05 Score=48.40 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=29.1
Q ss_pred ccccc-cCCcccccccccc-CCCCCcchhHHHHH
Q 004778 111 GSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 111 tl~V~-psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
.++|+ ++++|..||.+|+ +.|||+++|||++.
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 57889 9999999999999 99999999999754
No 210
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=83.67 E-value=4.6 Score=36.38 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EE------eCCeecCcccccc----cccccC
Q 004778 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LI------CRGKVLKDDQLLS----AYHVED 81 (731)
Q Consensus 13 e~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQR-LI------F~GKvLkDdkTLs----dYGIkd 81 (731)
..+...+-|+|-..||....|.|++.+|+.++-+++..|.++..+.-. |+ +--+.|+|+..|- .+.+..
T Consensus 4 ~~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s 83 (100)
T 1wgr_A 4 GSSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGG 83 (100)
T ss_dssp CCCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSS
T ss_pred cccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCC
Confidence 345566788888899999999999999999999999999887654432 22 1236788886654 455666
Q ss_pred CCEEEEeeecC
Q 004778 82 GHTLHMVVRQP 92 (731)
Q Consensus 82 GsTIhLVlRl~ 92 (731)
...|.+..+..
T Consensus 84 ~nr~~F~kr~~ 94 (100)
T 1wgr_A 84 DSRFVFRKNFA 94 (100)
T ss_dssp CCEEEECSCCS
T ss_pred CcEEEEecchh
Confidence 67777765543
No 211
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=82.62 E-value=2.6 Score=37.25 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=54.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecC
Q 004778 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~ 92 (731)
+.-.++-..++..||+.++.+.++..+.-.+...+..|+++++|-|-||+-.-.+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 44567788999999999999999999999999999889999999999999888888877643
No 212
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=81.71 E-value=4.8 Score=40.63 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=52.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCcccccccccccCCCEEEEeee
Q 004778 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 18 tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF---~GK--vLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.|.|.|..+|| ++.+.|++.+|+.+|-++|+++.++...+ .=|.| +|. .|+.++.|.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 37899999998 78899999999999999999999987643 24444 232 466677777766555444444444
No 213
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=80.84 E-value=5.2 Score=34.08 Aligned_cols=73 Identities=5% Similarity=0.049 Sum_probs=46.1
Q ss_pred EEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhC-----C-C-------CCCeEEEeCCeecCcccccccccc
Q 004778 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTG-----V-L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (731)
Q Consensus 19 MqItVKtLd------GKt~tLeVdpsdTV~dLKekIaektG-----I-P-------peqQRLIF~GKvLkDdkTLsdYGI 79 (731)
|+|+|+... |+...+++ ...||.+|++.+..++. + . ....++..+|+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667787662 33334665 45799999999988752 0 1 013566777776654222 25678
Q ss_pred cCCCEEEEeeecCC
Q 004778 80 EDGHTLHMVVRQPV 93 (731)
Q Consensus 80 kdGsTIhLVlRl~g 93 (731)
++|+.|.++-...+
T Consensus 79 ~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 79 ADGDSVTILPAVAG 92 (93)
T ss_dssp CTTCEEEEEECCTT
T ss_pred CCCCEEEEECCCCC
Confidence 99999998865443
No 214
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.70 E-value=0.076 Score=45.57 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=29.8
Q ss_pred CCCCCcccccccCCccccccccccCCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq~EGIPpdqQRLIfa 142 (731)
..++.+.+.|.++++|+.||.+|+..- +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST--TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC--cCcEEEEEC
Confidence 346677889999999999999999332 899999985
No 215
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.66 E-value=4.4 Score=41.46 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=55.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe--CCe--ecCcccccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF--~GK--vLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
...|.+.|..+|| ++.+.|+..+|+.+|-++|+.+.++...+ .=|.| +|. .|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5678999999998 88899999999999999999999987633 34444 342 477778888876655554444444
No 216
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=80.36 E-value=5.3 Score=35.22 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=45.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EeCCe----ecCcccccccccccCCCEEEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL-ICRGK----VLKDDQLLSAYHVEDGHTLHM 87 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRL-IF~GK----vLkDdkTLsdYGIkdGsTIhL 87 (731)
..|+|+|-. ++..|.|.|..+.+..+||.||..+..+ +...| .|++. .|.++..|. +-|+..+.|.|
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~-~aiqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVS-NIIQAKLKISV 82 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHH-HHHHTTCCEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHH-HHHHhcCeeEE
Confidence 568888877 4579999999999999999999999988 34444 44443 343333332 22445554444
No 217
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.07 E-value=0.11 Score=46.01 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.7
Q ss_pred cccC-Ccccccccccc-CC--CCCcch-hHHHHH
Q 004778 114 VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (731)
Q Consensus 114 V~ps-dTVesVK~~Iq-~E--GIPpdq-QRLIfa 142 (731)
|+++ +||..||.+|+ .+ |+|+++ |||+|.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 5565 99999999999 77 999999 999975
No 218
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.94 E-value=4.4 Score=46.66 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=51.2
Q ss_pred CcEEEEEEeCCC------cEEEEEecCCCCHHHHHHHHHHH--hCCCC------CCeEEEeC----Ce-ecCcc------
Q 004778 17 TTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASV--TGVLS------EQQRLICR----GK-VLKDD------ 71 (731)
Q Consensus 17 ~tMqItVKtLdG------Kt~tLeVdpsdTV~dLKekIaek--tGIPp------eqQRLIF~----GK-vLkDd------ 71 (731)
.+|.|+|-..+| ..+.+.|-.++||.++|+||-+. .++|. ++..|-+. |+ .|.|.
T Consensus 256 ~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 256 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp CEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCcccee
Confidence 456777655432 35778899999999999999754 23333 44555542 33 35442
Q ss_pred -------cccccccccCCCEEEEeeecC
Q 004778 72 -------QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 72 -------kTLsdYGIkdGsTIhLVlRl~ 92 (731)
.||+.|+|.||.+|-|+.+..
T Consensus 336 ~~~wkrLNTL~HY~V~dga~v~L~p~~~ 363 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDGATVALVPCLT 363 (644)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred cCcceeecchhhcCCCCCcEEEEEeccc
Confidence 379999999999999987764
No 219
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=79.88 E-value=0.092 Score=55.51 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
..++.+.+.|.+++||..||.+|+ +.|||+++|||+|.
T Consensus 241 l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 241 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 457788899999999999999999 89999999999975
No 220
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=79.85 E-value=3.6 Score=42.24 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCcccccccccccCCC
Q 004778 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGH 83 (731)
Q Consensus 10 s~se~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeq-QRLIF~---G--KvLkDdkTLsdYGIkdGs 83 (731)
+..++....|.+.|..+||....+.|++..|+.+|-++|+++.++...+ .=|.|. | ..|+.++.|.+.......
T Consensus 9 ~~~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~ 88 (296)
T 3qij_A 9 SGRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPW 88 (296)
T ss_dssp --------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CC
T ss_pred ccCCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCc
Confidence 3456677889999999999999999999999999999999999987633 345443 2 246667777766433334
Q ss_pred EEEEeee
Q 004778 84 TLHMVVR 90 (731)
Q Consensus 84 TIhLVlR 90 (731)
++++-++
T Consensus 89 ~l~frvk 95 (296)
T 3qij_A 89 NFTFNVK 95 (296)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 4554443
No 221
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=78.30 E-value=0.1 Score=56.21 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCccccccccccC----CCCCcchhHHHHHh
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDRG----DGVPSEISQIVSAV 143 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq~----EGIPpdqQRLIfav 143 (731)
..|+.+.++|.+++||..||.+|+. +|||+++|||||..
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~G 57 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG 57 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECC
Confidence 4577888999999999999999983 68999999999873
No 222
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=77.86 E-value=14 Score=32.06 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=44.1
Q ss_pred cEEEEEEeCC-------C-cEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEE---EeCCe------ecCccc---cc-
Q 004778 18 TIEIKIKTLD-------S-QTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRL---ICRGK------VLKDDQ---LL- 74 (731)
Q Consensus 18 tMqItVKtLd-------G-Kt~tLeVd--psdTV~dLKekIaektGIPpeqQRL---IF~GK------vLkDdk---TL- 74 (731)
+|+|+||... | +...+++. ...||.+|++.+.++..-. ..++ .-+|+ ++-|+. .+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~--~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~ 78 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINN--PNDVSIFIEDDSIRPGIITLINDTDWELEG 78 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSS--GGGHHHHEETTEECTTEEEEETTEEGGGGT
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchh--hHHHhhhccCCccccCeEEEECCEEccccC
Confidence 3788888763 2 45667776 6789999999998876311 1111 11221 222222 22
Q ss_pred -ccccccCCCEEEEeeecC
Q 004778 75 -SAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 75 -sdYGIkdGsTIhLVlRl~ 92 (731)
.++-|++|+.|.++-...
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLH 97 (99)
T ss_dssp GGGCBCCTTCEEEEEECTT
T ss_pred CCCcCcCCCCEEEEECCCC
Confidence 357799999998875433
No 223
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=77.35 E-value=8.3 Score=40.53 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCC---------eecCcccccccccccCCCEEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp-eqQRLIF~G---------KvLkDdkTLsdYGIkdGsTIh 86 (731)
..+.++|..+||....+.|+...|+.+|-++|+++.++.. +..-|.+.. +-|+.+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 4477889999999999999999999999999999999875 334555432 234445566655554555555
Q ss_pred Eeee
Q 004778 87 MVVR 90 (731)
Q Consensus 87 LVlR 90 (731)
+.+|
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
No 224
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=76.99 E-value=6.6 Score=32.29 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=39.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektG-----IPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+...++ ....||.+|++.+..+.. +......+..+|+.... ++-|++|+.|.++-..
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCC
Confidence 345555 567899999999875531 22344577888887753 5578899999987543
No 225
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.78 E-value=9.5 Score=34.66 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=56.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCe--ecCcccccccccccCCCEEEEe
Q 004778 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 14 ~s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLI---F~GK--vLkDdkTLsdYGIkdGsTIhLV 88 (731)
++.+.+-..|-..+...+++.+....|+.+|+..+++|.+...+.+.|+ ++|. +|+++..--.-.+.-...|++.
T Consensus 5 ~~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc 84 (104)
T 1wgy_A 5 SSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVY 84 (104)
T ss_dssp CCSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEE
T ss_pred CCCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 4445666778887888889999999999999999999999877778775 6774 3455543333334445677776
Q ss_pred eec
Q 004778 89 VRQ 91 (731)
Q Consensus 89 lRl 91 (731)
.|.
T Consensus 85 ~kd 87 (104)
T 1wgy_A 85 RKD 87 (104)
T ss_dssp ECC
T ss_pred ehH
Confidence 653
No 226
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=75.12 E-value=0.15 Score=53.87 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=32.6
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHH
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIf 141 (731)
.|+.+.+.|.+++||+.||.+|+ ++|||+++|+||+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 35677889999999999999999 9999999999993
No 227
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=74.84 E-value=12 Score=32.68 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=44.4
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCcccc
Q 004778 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (731)
Q Consensus 18 tMqItVKtLd------G-Kt~tLeVdpsdTV~dLKekIaektG-IPp---------eqQ-------RLIF~GKvLkDdkT 73 (731)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 5899999874 2 344444 6899999999987741 111 122 5667776553221
Q ss_pred cccccccCCCEEEEeee
Q 004778 74 LSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 74 LsdYGIkdGsTIhLVlR 90 (731)
-.++-|++|+.|.++-.
T Consensus 79 ~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 79 GLETLLKDSDEIGILPP 95 (99)
T ss_dssp STTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCEEEEECC
Confidence 23556899999988753
No 228
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.60 E-value=7.6 Score=44.01 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=56.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC---C--eecCcccccccccccCCCEEEEeee
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe-qQRLIF~---G--KvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
..|.|.|..+|| ++.|.|++.+|+.+|-..|+.+.|+... -.=|.|. | ..|+.++.|.+.+++.+..+.|.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468999999998 7789999999999999999999998753 3445553 2 3567778888877766655555544
Q ss_pred c
Q 004778 91 Q 91 (731)
Q Consensus 91 l 91 (731)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 3
No 229
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=72.98 E-value=7 Score=32.73 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=44.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
+|+.+.+ ...||.+|.+. .+++++..-+.++|+.+..+ ...++-|++||.|.++--..++
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 5676654 56899998764 57888888888999887433 4556778999999998765554
No 230
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=72.96 E-value=11 Score=43.31 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=52.4
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe-C---Ce-ecCc---------c
Q 004778 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC-R---GK-VLKD---------D 71 (731)
Q Consensus 17 ~tMqItVKtLd---GKt~tLeVdpsdTV~dLKekIaekt--GIP------peqQRLIF-~---GK-vLkD---------d 71 (731)
.+|.|+|-..+ ...+.+.|-.++||.++|+||-+.. ++| +++..|-+ . |+ .|.| +
T Consensus 232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 45777776544 3567889999999999999997652 333 34555554 2 33 3433 1
Q ss_pred ----cccccccccCCCEEEEeeecC
Q 004778 72 ----QLLSAYHVEDGHTLHMVVRQP 92 (731)
Q Consensus 72 ----kTLsdYGIkdGsTIhLVlRl~ 92 (731)
.||..|+|.||.+|-|+.+..
T Consensus 312 wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp EEECCBTTTTTCCTTCEEEEEEC--
T ss_pred eeEecchhhcCCCCCceEEEEeccc
Confidence 378999999999999988763
No 231
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=72.90 E-value=15 Score=33.25 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCe---ecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGK---VLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdG---Kt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF~GK---vLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
+.|+|..++. ...+++|..+.-|..|.-+|-++..++. .+--|-.--| +|+-..+|..|||+.+..|++.-.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 6677777554 5688999999999999999998887665 3444444332 568889999999999999988753
No 232
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.13 E-value=3 Score=38.79 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004778 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (731)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF 63 (731)
..+.|..++|+.+||++|++.+|+|+++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467899999999999999999999999999864
No 233
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=71.97 E-value=0.14 Score=43.41 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=29.7
Q ss_pred CCCCcccc-cccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 106 TSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 106 tG~titl~-V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+|+.. +. +.+++||..||..|+ +.|||+++|+|+|.
T Consensus 9 ~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 9 GGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp TEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred CCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeC
Confidence 34433 55 889999999999999 89999999999754
No 234
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=71.01 E-value=6.9 Score=31.57 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+|+.+ ++....||.+|.+++ +++.+...+..+|+.+..+ ...++-+++||.|.++--.
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56655 456678999999876 5667777788888887543 2335568999999887543
No 235
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=70.98 E-value=1.5 Score=39.79 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=46.8
Q ss_pred CcEEEEEEeCC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEeC-C--e------ecCcccc---c
Q 004778 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLICR-G--K------VLKDDQL---L 74 (731)
Q Consensus 17 ~tMqItVKtLd------GKt~tLeVdp----sdTV~dLKekIaektGIPpeqQRLIF~-G--K------vLkDdkT---L 74 (731)
++|+|+||... |+...+++.. ..||.+|-+.|.+.+ +..+-+|+.. | + +|-+++- |
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 34888888774 3555666663 249999888887765 2233344322 4 2 3433322 2
Q ss_pred --ccccccCCCEEEEeeecCCC
Q 004778 75 --SAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 75 --sdYGIkdGsTIhLVlRl~gg 94 (731)
.+|-|++||+|.++-...++
T Consensus 81 ~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCCC
T ss_pred CCcccCCCCcCEEEEeCCCccc
Confidence 35889999998887655553
No 236
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=70.04 E-value=7.3 Score=31.80 Aligned_cols=57 Identities=4% Similarity=0.138 Sum_probs=40.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIaektGIPpeqQ--RLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+...+++....||.+|++.+..+.. ..+.. .+..+|+.+.. ++-|++|+.|.++-..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECCC
Confidence 3556777777899999999877641 01233 67888888765 3578899999887543
No 237
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=64.67 E-value=7.1 Score=33.15 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCcccccccccccCCCEEEEeeecCCC
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIP-peqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl~gg 94 (731)
|+|+| +|+.+.+......||.+|.+. .+++ ++..-+.++|+.+..+ ...++-|++||.|.++--..++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 45544 567655421156899998775 4677 7777788999887433 3456678999999998766554
No 238
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.80 E-value=14 Score=29.61 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
+|+.+.+ ...||.+|.+++ +++.+...+..+|+.+..+ ...++-+++|+.|.++--.
T Consensus 5 Ng~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 5 NGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp TTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred CCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 6776654 568999998876 4566667778888877533 3345678999999988543
No 239
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=58.82 E-value=0.5 Score=41.43 Aligned_cols=42 Identities=2% Similarity=-0.140 Sum_probs=36.2
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhcc
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~S 146 (731)
.+++.+.+.|+++.++..|+..+. +.|++++++||+|..-.-
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l 57 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI 57 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc
Confidence 456778899999999999999988 999999999999885543
No 240
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=58.61 E-value=13 Score=29.77 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=40.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
|.|+|+..+|+. +++....|+.+|-+.|..... ....-...+|+..+-+ +-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 667787778876 456678999999888733221 1112234577765443 56667888887753
No 241
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=58.60 E-value=31 Score=35.67 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=43.6
Q ss_pred EEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eecCc-ccccccccc
Q 004778 21 IKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVLKD-DQLLSAYHV 79 (731)
Q Consensus 21 ItVKtLd-GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~G-KvLkD-dkTLsdYGI 79 (731)
+.+..+. -....+.+.+..|+.+||++|++.++++++.|.|+|.+ +..-| ......|.-
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 3344433 45567889999999999999999999999999999998 44333 344455543
No 242
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.82 E-value=32 Score=31.95 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCe--ecCcccccccccccCCC
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGH 83 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe------qQRLI---F~GK--vLkDdkTLsdYGIkdGs 83 (731)
+.+.+-..|-..+...+++.+....++.+|+..+++|.+...+ .+.|+ ++|. +|+++..--.-.+.-..
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~Ng 85 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINS 85 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSE
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccc
Confidence 3456778888888888889999999999999999999987654 67664 6774 34554332222344456
Q ss_pred EEEEeeec
Q 004778 84 TLHMVVRQ 91 (731)
Q Consensus 84 TIhLVlRl 91 (731)
.|++..|.
T Consensus 86 RLfvc~kd 93 (120)
T 2dhz_A 86 HLFACTRD 93 (120)
T ss_dssp EEEEECTT
T ss_pred eEEEeehH
Confidence 67776653
No 243
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=53.79 E-value=17 Score=40.71 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=61.1
Q ss_pred CCCCcEEEEEEeCC--CcEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------eecC-cccccccc--c
Q 004778 14 SSETTIEIKIKTLD--SQTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KVLK-DDQLLSAY--H 78 (731)
Q Consensus 14 ~s~~tMqItVKtLd--GKt~t----LeVdpsdTV~dLKekIaektGIPpeqQRLIF~G------KvLk-DdkTLsdY--G 78 (731)
.....+-|++|.-| .+++. +-|+.+.+|.+|-..|.++.|+|++.--++|.- ..|+ .+.+|.++ .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 34456999999876 34443 578999999999999999999999876555542 3567 57899999 9
Q ss_pred ccCCCEEEEeeec
Q 004778 79 VEDGHTLHMVVRQ 91 (731)
Q Consensus 79 IkdGsTIhLVlRl 91 (731)
|.+|+.|.+-...
T Consensus 206 L~~GdII~fQ~~~ 218 (530)
T 2ylm_A 206 LMDGDIIVFQKDD 218 (530)
T ss_dssp CCTTEEEEEEECC
T ss_pred ccCCCEEEEEecC
Confidence 9999998776643
No 244
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=53.10 E-value=12 Score=43.13 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-ecCcccccccc
Q 004778 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (731)
Q Consensus 27 dGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GK-vLkDdkTLsdY 77 (731)
..+.+.+.+.+++|+.+||..|++.++|+++.|.|++... .++.......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3566778999999999999999999999999999998854 45555555554
No 245
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=52.24 E-value=19 Score=32.37 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=37.2
Q ss_pred cEEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCC
Q 004778 18 TIEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRG 65 (731)
Q Consensus 18 tMqItVKtLd-------GKt~tLeVdpsdTV~dLKekIaektGIPp-----eqQRLIF~G 65 (731)
.|+|+|...+ +..+.|.|.++.+..+|..+|.+|.+++. ...||-|+.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 3788888753 55789999999999999999999988652 224666665
No 246
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.01 E-value=0.65 Score=43.11 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=32.7
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHHh
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfav 143 (731)
+..++..++++.+|..||..+. ..++|+++|||||+.
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~G 63 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSG 63 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETT
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECC
Confidence 4456788999999999999988 889999999999983
No 247
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=51.04 E-value=48 Score=27.48 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=38.7
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCcccccccccccCCCEEEEeeec
Q 004778 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 33 LeVdpsdTV~dLKekIaektG------I-----PpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
++++...||.+|.+.+..+.. + ......+..+|+.+... .-.++-|++|+.|.++-..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCC
Confidence 456666899999999987741 1 01345677888766422 2235568999999987543
No 248
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.33 E-value=36 Score=30.19 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=50.4
Q ss_pred CcEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHH--H-hCCCCCCeEEEeCCeecCcccccccccccCCCEEEEeee
Q 004778 17 TTIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIAS--V-TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 17 ~tMqItVKtLd-G--Kt~tLeVdpsdTV~dLKekIae--k-tGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.+|.|.|.+.- . +.+.+++....||.++-+..-- + ..|..+...+..+|+..+ .++-+++||.|.++--
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 56778776543 2 3456788899999998887643 2 245555678888888877 4556889999999865
Q ss_pred cC
Q 004778 91 QP 92 (731)
Q Consensus 91 l~ 92 (731)
+.
T Consensus 86 l~ 87 (97)
T 2hj1_A 86 LL 87 (97)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 249
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.38 E-value=17 Score=40.81 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=29.2
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004778 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (731)
Q Consensus 32 tLeVdpsdTV~dLKekIaektGIPpeqQRLI 62 (731)
.++|..++|+.+||++|++.+|+++++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 5789999999999999999999999999985
No 250
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=42.81 E-value=42 Score=37.18 Aligned_cols=47 Identities=4% Similarity=0.063 Sum_probs=40.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEe
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLIC 63 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp--eqQRLIF 63 (731)
..|.+.|..+||....+.|+..+|+.+|-+.|+++.|+.. +..-|++
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4589999999999999999999999999999999999974 3445554
No 251
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=42.66 E-value=1.3e+02 Score=27.21 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEE--EeCCeecCcccccccccccCCCEEEEeee
Q 004778 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe--qQRL--IF~GKvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
...=-++|+....+. ..-|- -.+..+|+.|..++++++.. ..+| ...|-.++|+..+.. + +..|+.+++.
T Consensus 16 ~~~kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~t--L-p~nT~lmvL~ 89 (100)
T 1f2r_I 16 RPLKPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC--L-PSNTKFVALA 89 (100)
T ss_dssp CCCEEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSS--S-CSCCEEEEEC
T ss_pred CCCCCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhc--C-CCCCEEEEEc
Confidence 333445666433333 33332 35799999999999999752 3444 456888877755433 2 3455555554
No 252
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=42.56 E-value=1 Score=37.15 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhc
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (731)
.+|+.+.+.|+++.++..++.... +.|++++++||+|..-.
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 50 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 50 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 356677889999999999999888 89999999999987544
No 253
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=40.35 E-value=9.3 Score=31.84 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.9
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCcccccccccccCCCEEEEee
Q 004778 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 33 LeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvLkDdkTLsdYGIkdGsTIhLVl 89 (731)
+++....||.+|.+.+ +++.+...+..+|+.+..+ +-|++||.|.++-
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 4556678999998765 4666777788899888654 5688899887764
No 254
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=39.08 E-value=65 Score=28.35 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=33.4
Q ss_pred CCcEEEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 004778 16 ETTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (731)
Q Consensus 16 ~~tMqItVKtLdGKt~-tLeVd-psdTV~dLKekIaektGIPpeqQRL 61 (731)
..+..|+-|....+.+ .+.++ ...+|.+||.+|..+.++...+.-|
T Consensus 4 ~~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 4 GSMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp TTBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred cceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 4456678888776655 47777 5789999999999988775544433
No 255
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=39.06 E-value=2 Score=37.53 Aligned_cols=42 Identities=2% Similarity=-0.140 Sum_probs=35.8
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhcc
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGS 146 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~S 146 (731)
.+|+.+.+.|+++.++..|+.... +.|++++++||+|..-.-
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l 55 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI 55 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc
Confidence 356677899999999999999888 899999999999975543
No 256
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=37.08 E-value=53 Score=30.85 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----Cc--ccccccccccCCCEEEEee
Q 004778 37 KQVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 37 psdTV~dLKekIaektGIPpeqQRLIF--~GKvL-----kD--dkTLsdYGIkdGsTIhLVl 89 (731)
...|+.+|-+.|..++|... +.-++- ..+.| +| +++|.++||++|+.|.+.=
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 35799998888998999863 454442 23444 22 4899999999999888764
No 257
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=36.06 E-value=1.1 Score=37.81 Aligned_cols=41 Identities=5% Similarity=-0.036 Sum_probs=34.5
Q ss_pred CCCC-CcccccccCCcccccccccc-CCCCCcchhHHHHHhhc
Q 004778 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (731)
Q Consensus 105 ~tG~-titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (731)
.+|+ .+.+.|+++.++..|+.... +.|++++++||+|..-.
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 57 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTK 57 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEE
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 4564 67899999999999999888 89999999999987544
No 258
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=35.99 E-value=12 Score=34.34 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEeCC---eecCcccccccccccCCCEEEEeee
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpe--qQRLIF~G---KvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
++|+|..++ ...+++|..+.-|..|.-||-++..++.+ +--|-.-- .+|+-..+|..|||+.+..+++.-.
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 555555544 77889999999999999999988776652 23333222 2568889999999999988877543
No 259
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.09 E-value=73 Score=28.29 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=43.9
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCcccccccccccCCCEEEEeeec
Q 004778 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (731)
Q Consensus 19 MqItVKtLd-GKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsdYGIkdGsTIhLVlRl 91 (731)
--++|+..+ .+.+-|-+ .+..+|+.|..+++.++....+|+. .|-.++|+..+..+ +..|+.+++..
T Consensus 10 kpfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 345555544 23344443 4799999999999999766666654 58888877554443 35677777664
No 260
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=34.32 E-value=65 Score=33.50 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=50.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCccccccc----ccccCCCEE
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA----YHVEDGHTL 85 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-------GKvLkDdkTLsd----YGIkdGsTI 85 (731)
..+-|+|-..+|....|.|++++|+.+|-+.+..+.++....-..+|. -+.|+|...|.+ ........|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 456678878899999999999999999999999888765544333332 267788766544 344445555
Q ss_pred EEe
Q 004778 86 HMV 88 (731)
Q Consensus 86 hLV 88 (731)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 261
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=34.12 E-value=2.1e+02 Score=25.22 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=53.5
Q ss_pred EEEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHh-C--CCC--CCeEEEeCCee--cCcccccccccccCCCEEEEee
Q 004778 19 IEIKIKTLDSQT-YTLRVDKQVPVPALKEQIASVT-G--VLS--EQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (731)
Q Consensus 19 MqItVKtLdGKt-~tLeVdpsdTV~dLKekIaekt-G--IPp--eqQRLIF~GKv--LkDdkTLsdYGIkdGsTIhLVl 89 (731)
+-|..+....-. .-+.|+..+|+.++-+|++... | +.+ .-.|..++|+. |.++.++++.||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 344555543322 3468999999999999998752 3 322 35788899987 9999999999999999998875
No 262
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=33.61 E-value=1.4e+02 Score=26.31 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=48.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--CCC---CCeEEEeCC--eecCcccccccccccCCCEEEEeee
Q 004778 31 YTLRVDKQVPVPALKEQIASVT-G--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (731)
Q Consensus 31 ~tLeVdpsdTV~dLKekIaekt-G--IPp---eqQRLIF~G--KvLkDdkTLsdYGIkdGsTIhLVlR 90 (731)
.-+.|+..+|+.++-+|++... | +.+ .-.+..++| +.|..+.++++-||+.-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3468999999999999998652 2 322 246788999 8999999999999999999888753
No 263
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.94 E-value=5.1 Score=34.49 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=31.1
Q ss_pred CCCcccccccCCcccccccccc-CCCCCcchhHHHHH
Q 004778 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (731)
Q Consensus 107 G~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfa 142 (731)
+......+.++.||..||.+|+ .-|+|+..|+|.+.
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 4456678889999999999999 89999999999754
No 264
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=32.20 E-value=55 Score=29.21 Aligned_cols=59 Identities=8% Similarity=0.240 Sum_probs=42.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecCc------ccccccccccCCCEEEEe
Q 004778 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLKD------DQLLSAYHVEDGHTLHMV 88 (731)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIPpe-----------qQRLIF~G-KvLkD------dkTLsdYGIkdGsTIhLV 88 (731)
...++|++++|+.+|-+.+.+.-.+... ...|++.. ..|+. +++|.++|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568899999999999999985332111 34455554 34432 477999999999998884
No 265
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=29.84 E-value=2.6 Score=36.62 Aligned_cols=42 Identities=2% Similarity=-0.156 Sum_probs=35.4
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhccc
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~S~ 147 (731)
+++.+.+.|.++.++..|+.... +.|++++++||+|..-.-.
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~ 68 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 68 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC
Confidence 45667789999999999999888 8999999999998865543
No 266
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=25.73 E-value=1.1e+02 Score=27.98 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=48.6
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-CC-------CCCeEEEe---CC--eecCcc-ccccccccc
Q 004778 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VL-------SEQQRLIC---RG--KVLKDD-QLLSAYHVE 80 (731)
Q Consensus 15 s~~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektG-IP-------peqQRLIF---~G--KvLkDd-kTLsdYGIk 80 (731)
....+.|.+-..+|-.+.++|..+.|+.+||+.+.+..+ .| ++.-.+.+ .| ..|.|+ +.|.|+...
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 345677777788999999999999999999999977632 21 11112221 12 246444 778877665
Q ss_pred CCCEEEEeee
Q 004778 81 DGHTLHMVVR 90 (731)
Q Consensus 81 dGsTIhLVlR 90 (731)
-..|.|+-|
T Consensus 96 -~piLklver 104 (108)
T 2v1y_A 96 -QPFLKVIEP 104 (108)
T ss_dssp -SSEEEEECC
T ss_pred -ceEEEEEee
Confidence 345555544
No 267
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=25.72 E-value=3.2 Score=37.65 Aligned_cols=41 Identities=2% Similarity=-0.062 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhc
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~ 145 (731)
.+++.+.+.|.++.++..|+.... +.|++++++||+|..-.
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~ 75 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTP 75 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCB
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 346677899999999999999888 89999999999987554
No 268
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=25.63 E-value=1.5e+02 Score=27.62 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCCCCCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHH-hC-------CCCCCeEEEeCCeec--Ccccccccc
Q 004778 12 AESSETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASV-TG-------VLSEQQRLICRGKVL--KDDQLLSAY 77 (731)
Q Consensus 12 se~s~~tMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIaek-tG-------IPpeqQRLIF~GKvL--kDdkTLsdY 77 (731)
.+.-...+-|+|-..+- .-+.+.|.+.++..+|-+++-.- ++ |..++-.+..+|+.. +.+++|++-
T Consensus 17 ~enF~g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaen 96 (119)
T 3u52_E 17 VENFHGMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQ 96 (119)
T ss_dssp GGGGTTCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTT
T ss_pred HhhCCCCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHc
Confidence 34445667888877542 34679999999999988877543 33 555666788999988 456999999
Q ss_pred cccCCCEEEEe
Q 004778 78 HVEDGHTLHMV 88 (731)
Q Consensus 78 GIkdGsTIhLV 88 (731)
||...+.|.+.
T Consensus 97 G~~HKs~lrf~ 107 (119)
T 3u52_E 97 GIDHKSMLTVT 107 (119)
T ss_dssp TCCTTEEEEEE
T ss_pred CCCchheEEEe
Confidence 99999988886
No 269
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.39 E-value=86 Score=36.06 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPp 56 (731)
..|.+.|..+||....+.|+..+|+.+|-++|+.+.|+..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 4689999999999999999999999999999999998653
No 270
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=24.50 E-value=2.8e+02 Score=24.33 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec-Cccccccc----ccccCCCEE
Q 004778 15 SETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL-KDDQLLSA----YHVEDGHTL 85 (731)
Q Consensus 15 s~~tMqItVKtLdG----Kt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~GKvL-kDdkTLsd----YGIkdGsTI 85 (731)
....+.|.+|.... +...+.|..+.|+.+|...|.++.++ +..-|+.+...+ ..+.++.+ |+ ++..|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~L 80 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDEL 80 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEE
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEE
Confidence 34457777776432 23356799999999999999999998 566777777644 44545443 34 34555
Q ss_pred EEee
Q 004778 86 HMVV 89 (731)
Q Consensus 86 hLVl 89 (731)
++..
T Consensus 81 yv~Y 84 (91)
T 3w1s_C 81 IVSY 84 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 271
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=24.39 E-value=71 Score=32.73 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCccccccc
Q 004778 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA 76 (731)
Q Consensus 19 MqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQRLIF~-------GKvLkDdkTLsd 76 (731)
.-|+|-..+|....|.|++++|+.+|=..+..+..+..+.-..+|. -|.|+|...+-+
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 4566667889999999999999999999998887765444433332 267778765544
No 272
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.59 E-value=3.5 Score=36.91 Aligned_cols=43 Identities=2% Similarity=-0.160 Sum_probs=35.9
Q ss_pred CCCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhccc
Q 004778 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (731)
Q Consensus 105 ~tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~S~ 147 (731)
.+++.+.+.|+++.++..|+.... +.|++++++||+|..-.--
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~ 75 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN 75 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 346667899999999999999888 8999999999998755433
No 273
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=23.57 E-value=1.4e+02 Score=29.26 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=42.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE--e-C---CeecCcccc
Q 004778 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI--C-R---GKVLKDDQL 73 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLI--F-~---GKvLkDdkT 73 (731)
..+.|.|-..+|....|.|++.+|+.+|-+.+.++.++..+.. .|+ + . -+.|+|+..
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~ 96 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHEN 96 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSB
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchh
Confidence 3466777778899999999999999999999999999876543 332 1 1 246666644
No 274
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=21.06 E-value=65 Score=27.57 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=29.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCC-----CCCeEEEeCC
Q 004778 30 TYTLRVDKQVPVPALKEQIASVTGVL-----SEQQRLICRG 65 (731)
Q Consensus 30 t~tLeVdpsdTV~dLKekIaektGIP-----peqQRLIF~G 65 (731)
.+.|.|.++.+..+|..+|.+|+++. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 67889999999999999999999975 3556676665
No 275
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=20.96 E-value=4 Score=36.81 Aligned_cols=42 Identities=5% Similarity=-0.105 Sum_probs=35.5
Q ss_pred CCCCcccccccCCcccccccccc-CCCCCcchhHHHHHhhccc
Q 004778 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (731)
Q Consensus 106 tG~titl~V~psdTVesVK~~Iq-~EGIPpdqQRLIfavl~S~ 147 (731)
+|+.+.+.|+++..+..|+.... +.|++++++||+|..-.--
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~ 81 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ 81 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC
Confidence 45667889999999999999888 8999999999999765543
No 276
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=20.73 E-value=1.4e+02 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004778 278 LAEVMQSTRQMLIEQSAECLHQLARQLEN 306 (731)
Q Consensus 278 L~~v~~~t~qll~~~a~~~Ls~la~qL~~ 306 (731)
.+..+..-+..++.+ +.+|++|..||.|
T Consensus 11 v~~AL~KiQ~VVN~q-~~aL~~Lt~QL~n 38 (38)
T 2beq_A 11 TSTALGKLQDVVNQN-AQALNTLVKQLSX 38 (38)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhcC
Confidence 345566667777888 8999999999864
No 277
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=20.29 E-value=1.8e+02 Score=25.69 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=34.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCee
Q 004778 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKV 67 (731)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIaektGIPpeqQ-RLIF~GKv 67 (731)
...|.|.|++..+=.++|+.|+..+++.+..- -|+..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 36899999999999999999999999999776 46677764
No 278
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=20.05 E-value=3.5e+02 Score=23.74 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=36.4
Q ss_pred CcEEEEEEeCCCcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004778 17 TTIEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (731)
Q Consensus 17 ~tMqItVKtLdGKt~tLeVd--psdTV~dLKekIaektGIPpeqQRLIF~G 65 (731)
..++|+.|. +.....+.++ ...+-.+|+.+|+....++.....|.|..
T Consensus 5 ~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 5 SIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 457777777 4555556665 45899999999999999877777777764
Done!