Query 004779
Match_columns 731
No_of_seqs 306 out of 1947
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 6E-56 2.1E-60 531.1 50.7 508 19-708 65-583 (802)
2 2z86_A Chondroitin synthase; G 99.8 1.3E-18 4.5E-23 202.2 17.7 211 93-478 91-337 (625)
3 3bcv_A Putative glycosyltransf 99.8 1.6E-18 5.5E-23 175.6 13.2 109 93-311 3-111 (240)
4 1xhb_A Polypeptide N-acetylgal 99.8 4.5E-18 1.5E-22 191.2 16.4 238 91-501 25-300 (472)
5 1qg8_A Protein (spore coat pol 99.7 5.1E-18 1.8E-22 173.7 11.3 218 95-489 1-235 (255)
6 2d7i_A Polypeptide N-acetylgal 99.7 1.2E-16 4.3E-21 184.3 17.6 239 92-501 109-378 (570)
7 2ffu_A Ppgalnact-2, polypeptid 99.7 8.5E-17 2.9E-21 182.5 14.2 112 91-311 62-173 (501)
8 2z86_A Chondroitin synthase; G 99.7 2.2E-16 7.4E-21 183.5 12.7 221 93-494 373-598 (625)
9 3ckj_A Putative uncharacterize 99.6 1.3E-15 4.5E-20 163.7 13.7 123 92-325 45-170 (329)
10 4fix_A UDP-galactofuranosyl tr 99.5 4.5E-14 1.5E-18 165.3 11.9 124 93-322 178-303 (657)
11 3l7i_A Teichoic acid biosynthe 99.5 2.2E-15 7.6E-20 178.6 0.0 194 95-463 2-199 (729)
12 2fy7_A Beta-1,4-galactosyltran 99.4 4.5E-13 1.5E-17 141.7 10.3 63 433-495 189-264 (287)
13 3f1y_A Mannosyl-3-phosphoglyce 99.4 3E-12 1E-16 140.9 14.6 120 94-323 93-216 (387)
14 2nxv_A ATP synthase subunits r 99.1 1.4E-09 4.7E-14 112.0 15.2 50 267-321 62-112 (249)
15 2bo4_A Mannosylglycerate synth 98.6 3.3E-07 1.1E-11 101.0 16.3 42 264-310 73-119 (397)
16 2zu9_A Mannosyl-3-phosphoglyce 98.0 3.1E-05 1.1E-09 84.6 11.6 37 265-307 143-182 (394)
17 1fo8_A Alpha-1,3-mannosyl-glyc 97.9 1E-05 3.4E-10 87.4 5.9 44 94-142 1-44 (343)
18 2wvl_A Mannosyl-3-phosphoglyce 97.8 0.00013 4.5E-09 78.1 12.8 44 93-145 51-94 (391)
19 3lw6_A FI08434P, beta-4-galact 89.6 1.2 4.1E-05 46.3 9.5 53 442-494 185-250 (287)
20 3q80_A 2-C-methyl-D-erythritol 43.2 43 0.0015 33.2 7.0 45 267-311 83-127 (231)
21 3d5n_A Q97W15_sulso; NESG, SSR 35.4 68 0.0023 30.5 6.8 41 265-309 71-112 (197)
22 2j0a_A Beta-1,3-N-acetylglucos 27.7 67 0.0023 32.9 5.5 30 282-313 92-121 (280)
23 2xwl_A 2-C-methyl-D-erythritol 21.5 1.2E+02 0.004 28.9 5.7 41 266-309 78-118 (223)
24 2y6p_A 3-deoxy-manno-octuloson 21.4 1E+02 0.0036 29.5 5.4 41 265-311 72-113 (234)
25 3f1c_A Putative 2-C-methyl-D-e 21.3 76 0.0026 31.3 4.4 46 266-311 84-132 (246)
26 2l9u_A Receptor tyrosine-prote 20.3 76 0.0026 22.2 2.7 18 23-40 16-33 (40)
27 1e5k_A Molybdopterin-guanine d 20.1 1.1E+02 0.0036 29.2 5.0 39 265-308 77-116 (201)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6e-56 Score=531.07 Aligned_cols=508 Identities=20% Similarity=0.271 Sum_probs=380.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCCCCCCCCCCCce
Q 004779 19 INRLHALLHCIAIGFLIYYRASYLLQET-RAIPIILWLLVFASELLLSFIWLLGRAYLWRPVSRTVFPERLPEDDKLPAI 97 (731)
Q Consensus 19 ~~r~~~~~~~~~~~~yl~wR~~~~l~~~-~~~~~~~w~~l~~aE~~~~~~~~l~~~~~~~p~~r~~~~~~l~~~~~~P~V 97 (731)
+..+++++.+++.+.|++||++.+++.. .+...++|++++++|+++.+.+++..+..++|..|...++. .+++.|+|
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~P~V 142 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL--QPEELPTV 142 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC--CTTTCCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC--CccCCCcE
Confidence 3444444555567789999999999864 35677889999999999999999999999999988765543 25678999
Q ss_pred EEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCCcccccc
Q 004779 98 DVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICPQAYFS 177 (731)
Q Consensus 98 dV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p~~yf~ 177 (731)
+|+||| |||+++++++|+.|+++++||.++++|+|+|||++|.|.+.
T Consensus 143 SViIPt---yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------------ 189 (802)
T 4hg6_A 143 DILVPS---YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------------ 189 (802)
T ss_dssp EEEEEC---TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------------
T ss_pred EEEEEE---CCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc------------------------------
Confidence 999999 99998888999999999999999999999999999977531
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcEEEEecc
Q 004779 178 EADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLLVYVSRE 257 (731)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l~yv~R~ 257 (731)
.+++.+++.++..+..+++..+ .++.|+.|+
T Consensus 190 --------~d~~i~~~~~~~~~~l~~~~~~-----------------------------------------~~v~~i~~~ 220 (802)
T 4hg6_A 190 --------PDPELAQKAQERRRELQQLCRE-----------------------------------------LGVVYSTRE 220 (802)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHH-----------------------------------------HTCEEEECS
T ss_pred --------CCHHHHHHHHhhhHHHHHHHHh-----------------------------------------cCcEEEEec
Confidence 1233333221111111111111 137788887
Q ss_pred CCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhc-CCCCCCcEEEEccCceeccCCCC---
Q 004779 258 KRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHNINKY--- 333 (731)
Q Consensus 258 k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~-D~~~~~~vg~VQ~Pq~f~n~~~~--- 333 (731)
++ +++|+||+|.+++. ++||||+++|||++++ ||+|++++.+|. || ++++||+|+.+.|.++.
T Consensus 221 ~~----~~GKa~alN~gl~~----a~gd~Il~lDaD~~~~-pd~L~~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~ 287 (802)
T 4hg6_A 221 RN----EHAKAGNMSAALER----LKGELVVVFDADHVPS-RDFLARTVGYFVEDP----DLFLVQTPHFFINPDPIQRN 287 (802)
T ss_dssp SC----CSHHHHHHHHHHHH----CCCSEEEECCTTEEEC-TTHHHHHHHHHHHSS----SCCEEECCCCBSSCCHHHHH
T ss_pred CC----CCcchHHHHHHHHh----cCCCEEEEECCCCCcC-hHHHHHHHHHHhcCC----CeEEEeccEEEeCCchHhhh
Confidence 74 68999999999999 8999999999999997 999999999994 66 59999999999875311
Q ss_pred ----chHHHHHHHHHHHHHHhhhhcCCccccceeEEEeccccccccchhhhhhhcCCchhhhhhhhhhhcccCCCCCCch
Q 004779 334 ----DIYDGRFRSAYCVQWQGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGENFS 409 (731)
Q Consensus 334 ----d~~~~~~~~f~~~i~~g~dg~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 409 (731)
+.+.++...++...+.+.+.+++++++|+++++||+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~------------------------------------ 331 (802)
T 4hg6_A 288 LALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDE------------------------------------ 331 (802)
T ss_dssp HTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHH------------------------------------
T ss_pred hhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHH------------------------------------
Confidence 1222345678899999999999999999999999999962
Q ss_pred hhHHHhhcccccceeeccccccccccccCCCccchHHHHHHHHhCCCEEEEeCCCCCeeEeccCCChHHHhhhhhhhccc
Q 004779 410 NVLQEETGVLASCSYEHQTKWGEEVGILYQSVSEDLFTGFILHCKGWTSTYLTPFRPQFLGTSTTNLNDLLIQGTRWGSG 489 (731)
Q Consensus 410 ~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~svtED~~t~~rl~~~Gwrs~y~~~~~~~~~g~aP~~l~~~~~Qr~RWa~G 489 (731)
.+||++++++||.+++++++++||++.|+++ +.+++.+|+++.++++||.||++|
T Consensus 332 -----------------------vGgf~~~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~G 386 (802)
T 4hg6_A 332 -----------------------AGGFAGETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQRGRWATG 386 (802)
T ss_dssp -----------------------HTTCCCSSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHHHHHHHH
T ss_pred -----------------------cCCcCCCCcchHHHHHHHHHHcCCeEEEecC--CEEEecCCCCHHHHHHHHHHHHcc
Confidence 4689999999999999999999999999986 899999999999999999999999
Q ss_pred cccccccccCCcccCCCCCCHhHHHHhHhHhHhhHHhHHHHHHHHHHHHHHHHcCCccccccCchhHHHHHHHHHHHHHH
Q 004779 490 LTDVGLSRFCPLLYGPSRMSLLQSMCYGELSFFPLLYCLPLWCLATLPQLCLLNGISLYPEVSSPSFIVFSFIFISAICK 569 (731)
Q Consensus 490 ~~qi~~~~~~pl~~~~~~l~~~qrl~y~~~~~~~~l~~~~~l~~~l~P~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 569 (731)
.+|+++. ++|++. +++++.||++|+.+..++ +.+++.++++++|++++++|..++......+.. .++++++.
T Consensus 387 ~~q~l~~-~~pl~~--~~l~~~~rl~~l~~~~~~-~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~----~~lp~~l~ 458 (802)
T 4hg6_A 387 MMQMLLL-KNPLFR--RGLGIAQRLCYLNSMSFW-FFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLA----YMPGYLAV 458 (802)
T ss_dssp HHHHHHH-SCTTSC--SSCCHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH----HHHHHHHH
T ss_pred HHHHHHH-hCcccc--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHH----HHHHHHHH
Confidence 9999984 578775 789999999999988888 888999999999999999999887643222222 22333322
Q ss_pred HHH-HHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccCCcchhhhhhhcccceeecccchhhH
Q 004779 570 HLQ-EVISTGGSIYAWRNEQRIWMIKSVTAHFYGSMDTILKLLGLRKASFLPTNKVLDKEQVKRYEMGQFDFQTSSMFLV 648 (731)
Q Consensus 570 ~ll-~~~~~g~~~~~ww~~~~~w~i~~~~~~~~~~~~al~~~l~~~~~~F~VT~K~~~~~~~~~~~~~~f~f~~~~~l~~ 648 (731)
..+ .....|.....||... ++ +...++.+...+..++++++.+|+||+|+.+.++ .. .+.+++
T Consensus 459 ~~~~~~~~~~~~r~~~~~~l-~~----~~~~~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~------~~-----~~~~~~ 522 (802)
T 4hg6_A 459 SFLVQNALFARQRWPLVSEV-YE----VAQAPYLARAIVTTLLRPRSARFAVTAKDETLSE------NY-----ISPIYR 522 (802)
T ss_dssp HHHHHHHHHTTTSCTTHHHH-HH----HHHHHHHHHHHHHHHHSTTCCCCCCCCCCCCCSS------CC-----BCTTCH
T ss_pred HHHHHHHHhcCcHHHHHHHH-HH----HHHHHHHHHHHHHHHhCCCCCcceECCCCccccc------cc-----hhhHHH
Confidence 221 1122344334465442 22 2234455555666778889999999999986543 11 125678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-cchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 004779 649 PMVSLMILNMAALLCGFIRIIAVGN-WDKLFPQLLLSLYILIINFAIVEGMIVRKDKGRIS 708 (731)
Q Consensus 649 P~~~l~~l~l~al~~g~~r~~~~~~-~~~~~~~~~~~~w~l~~l~p~~~al~~r~~k~~~p 708 (731)
|++++++++++++++|++++..... ......+++|++++++.+.+.+.+.+.|+.+++-|
T Consensus 523 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~~R~~~ 583 (802)
T 4hg6_A 523 PLLFTFLLCLSGVLATLVRWVAFPGDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRAAP 583 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTTBCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 9999999999999999999875432 12233344444444444444444444444444433
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.78 E-value=1.3e-18 Score=202.16 Aligned_cols=211 Identities=17% Similarity=0.132 Sum_probs=147.9
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCCc
Q 004779 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICP 172 (731)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p 172 (731)
..|.|+|+||| |||+ +.+.+||.++++++||. ..+|+|+|||++|.|.+.+.+ +.
T Consensus 91 ~~p~vsviIp~---~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~--------------~~------ 145 (625)
T 2z86_A 91 IIDGLSIVIPT---YNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE--------------FE------ 145 (625)
T ss_dssp CCCCEEEEEEE---SSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------TT------
T ss_pred cCCcEEEEEec---CCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------hh------
Confidence 35899999999 9998 89999999999999885 699999999999965421110 00
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcEE
Q 004779 173 QAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLLV 252 (731)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l~ 252 (731)
..+++.
T Consensus 146 --------------------------------------------------------------------------~~~~i~ 151 (625)
T 2z86_A 146 --------------------------------------------------------------------------SLLNIK 151 (625)
T ss_dssp --------------------------------------------------------------------------TTSCEE
T ss_pred --------------------------------------------------------------------------hcCCeE
Confidence 012477
Q ss_pred EEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhc-CCCCCCcEEEEccCceeccCC
Q 004779 253 YVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHNIN 331 (731)
Q Consensus 253 yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~-D~~~~~~vg~VQ~Pq~f~n~~ 331 (731)
|+.++++ .++|++|+|.|++. ++||+|+++|+|+++. |++|.+++..|. +| .++.|+..+.+.+..
T Consensus 152 ~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~-~~~l~~~~~~~~~~~----~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 152 YVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAPN-PLWVQSYMELLAVDD----NVALIGPRKYIDTSK 218 (625)
T ss_dssp EEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEEC-TTHHHHHHHHHHHCT----TEEEECCEEEECCTT
T ss_pred EEEeCCC----CcchhHHHHHHHHh----CCcCEEEEECCCCCCC-HHHHHHHHHHHhcCC----ceEEEEeeeeccCcc
Confidence 8876542 45799999999999 8999999999999997 999999999886 44 588887665554321
Q ss_pred CCchHHH---------H------HHHHHH------------HHHHhhhh---cC--CccccceeEEEeccccccccchhh
Q 004779 332 KYDIYDG---------R------FRSAYC------------VQWQGMDG---LK--GPVLSGTGYYIKRESLYADFTHTE 379 (731)
Q Consensus 332 ~~d~~~~---------~------~~~f~~------------~i~~g~dg---~~--~~~~~Gtg~~~RR~aL~~~~~~~~ 379 (731)
. .+.. . ...+.. ......+. .. ...++|++.++||+++..
T Consensus 219 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~------ 290 (625)
T 2z86_A 219 -H-TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFR------ 290 (625)
T ss_dssp -C-CHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHH------
T ss_pred -c-chhhcccchHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHH------
Confidence 1 0000 0 000000 00000011 11 124789999999999862
Q ss_pred hhhhcCCchhhhhhhhhhhcccCCCCCCchhhHHHhhcccccceeeccccccccccccCCCc---cchHHHHHHHHhCCC
Q 004779 380 LKDTFGKSNVLINSLHQSYKQNNANGENFSNVLQEETGVLASCSYEHQTKWGEEVGILYQSV---SEDLFTGFILHCKGW 456 (731)
Q Consensus 380 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~sv---tED~~t~~rl~~~Gw 456 (731)
.+||+.... .||.++++|++++||
T Consensus 291 -----------------------------------------------------iGgfde~~~~~g~ED~dl~~Rl~~~G~ 317 (625)
T 2z86_A 291 -----------------------------------------------------AGWFDEEFTHWGGEDNEFGYRLYREGC 317 (625)
T ss_dssp -----------------------------------------------------HCCCCTTCSSCCCHHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------hCCCccccccCCcchhhhhhhHHhCCc
Confidence 456876654 599999999999999
Q ss_pred EEEEeCCCCCeeEeccCCChHH
Q 004779 457 TSTYLTPFRPQFLGTSTTNLND 478 (731)
Q Consensus 457 rs~y~~~~~~~~~g~aP~~l~~ 478 (731)
++.|+++ +.++...|.+-..
T Consensus 318 ~i~~~p~--~~v~H~~~~~~~~ 337 (625)
T 2z86_A 318 YFRSVEG--AMAYHQEPPGKEN 337 (625)
T ss_dssp EEEECGG--GCEEEECCC----
T ss_pred eEEEccc--chhhccCCccccc
Confidence 9999985 6777777766443
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.77 E-value=1.6e-18 Score=175.59 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=90.2
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCCc
Q 004779 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICP 172 (731)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p 172 (731)
..|.|+|+||+ ||++ +.+.++|.|+++++||. ++|+|+|||++|.|.+.+.+.+
T Consensus 3 ~~p~vsViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~d~t~~~~~~~~-------------------- 56 (240)
T 3bcv_A 3 LIPKVSVIVPI---YNVE-KYLDQCVQALLAQTLSD--IEIILIDDESPDNCPKICDDYA-------------------- 56 (240)
T ss_dssp CCCSEEEEEEE---SSCT-TTHHHHHHHHHTCSSSS--EEEEEEECCCSSSHHHHHHHHH--------------------
T ss_pred CCCcEEEEEec---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECCCCcCHHHHHHHHH--------------------
Confidence 35899999999 9998 88999999999999985 9999999999997754221110
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcEE
Q 004779 173 QAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLLV 252 (731)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l~ 252 (731)
...|++.
T Consensus 57 -------------------------------------------------------------------------~~~~~i~ 63 (240)
T 3bcv_A 57 -------------------------------------------------------------------------AQYPNIK 63 (240)
T ss_dssp -------------------------------------------------------------------------HHCSSEE
T ss_pred -------------------------------------------------------------------------hhCCCEE
Confidence 0124577
Q ss_pred EEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcC
Q 004779 253 YVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 311 (731)
Q Consensus 253 yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D 311 (731)
++.. + +.++++|.|.|++. ++||||+++|+|.++. |++|.+++..+.+
T Consensus 64 ~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~~-~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 64 VIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYVD-SDMYMTMYNVAQK 111 (240)
T ss_dssp EEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCCC-TTHHHHHHHHHHH
T ss_pred EEEC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcCC-HHHHHHHHHHHHh
Confidence 7753 2 46899999999999 8999999999999987 9999999998875
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.76 E-value=4.5e-18 Score=191.19 Aligned_cols=238 Identities=15% Similarity=0.075 Sum_probs=157.7
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCcc-chhhHHHHHHhhhcchhhhhhcCccc
Q 004779 91 DDKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPI-TLHGMREACRFAKWWLPFCRRYGIKT 169 (731)
Q Consensus 91 ~~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~-T~~~l~Ea~~fa~~w~pfc~~~~v~~ 169 (731)
+++.|.|+|+||+ |||+.+.+.+||.|+++++||....+|+|+|||++|. |.+.+.+..
T Consensus 25 ~~~~p~vSVIIp~---yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~----------------- 84 (472)
T 1xhb_A 25 PDNLPTTSVVIVF---HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV----------------- 84 (472)
T ss_dssp CSCCCCEEEEEEE---SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH-----------------
T ss_pred CcCCCCeEEEEEe---CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHH-----------------
Confidence 3568999999999 9999788999999999999997678999999999984 543221110
Q ss_pred CCcccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCC
Q 004779 170 ICPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMP 249 (731)
Q Consensus 170 r~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P 249 (731)
..+|
T Consensus 85 ----------------------------------------------------------------------------~~~~ 88 (472)
T 1xhb_A 85 ----------------------------------------------------------------------------KKLK 88 (472)
T ss_dssp ----------------------------------------------------------------------------HSSS
T ss_pred ----------------------------------------------------------------------------HHCC
Confidence 0124
Q ss_pred -cEEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhc-CCCCCCcEEEEccCcee
Q 004779 250 -LLVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKF 327 (731)
Q Consensus 250 -~l~yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~-D~~~~~~vg~VQ~Pq~f 327 (731)
++.++..++| .++++|+|.|++. ++||+|+++|+|..++ |++|.+++..+. ++ .++.+.. ...
T Consensus 89 ~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~----~~~v~~~-~~~ 153 (472)
T 1xhb_A 89 VPVHVIRMEQR-----SGLIRARLKGAAV----SRGQVITFLDAHCECT-AGWLEPLLARIKHDR----RTVVCPI-IDV 153 (472)
T ss_dssp SCEEEEECSSC-----CCHHHHHHHHHHH----CCSSEEEEEESSEEEC-TTCHHHHHHHHHHCT----TEEEEEE-EEE
T ss_pred CcEEEEECCCC-----CChHHHHHHHHHh----ccCCeEEEECCCeEeC-ccHHHHHHHHHHhCC----CEEEEee-eee
Confidence 5788876653 5799999999999 8999999999999987 999999999886 33 3443311 111
Q ss_pred ccCCCC------c----hHHHH----HH-H-HHHHHHHhhh---hcCCccccceeEEEeccccccccchhhhhhhcCCch
Q 004779 328 HNINKY------D----IYDGR----FR-S-AYCVQWQGMD---GLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSN 388 (731)
Q Consensus 328 ~n~~~~------d----~~~~~----~~-~-f~~~i~~g~d---g~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~ 388 (731)
.+.+.. . .+... .. . -.....+..+ ....+..+|++.++||+++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~--------------- 218 (472)
T 1xhb_A 154 ISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQE--------------- 218 (472)
T ss_dssp ECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHH---------------
T ss_pred EcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHH---------------
Confidence 111000 0 00000 00 0 0000000001 223445677778889998852
Q ss_pred hhhhhhhhhhcccCCCCCCchhhHHHhhcccccceeeccccccccccccCCCc---cchHHHHHHHHhCCCEEEEeCCCC
Q 004779 389 VLINSLHQSYKQNNANGENFSNVLQEETGVLASCSYEHQTKWGEEVGILYQSV---SEDLFTGFILHCKGWTSTYLTPFR 465 (731)
Q Consensus 389 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~sv---tED~~t~~rl~~~Gwrs~y~~~~~ 465 (731)
.+||+++.. .||+++++|+.+.|+++.|++.
T Consensus 219 --------------------------------------------iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~-- 252 (472)
T 1xhb_A 219 --------------------------------------------IGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTC-- 252 (472)
T ss_dssp --------------------------------------------TTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEE--
T ss_pred --------------------------------------------cCCCCCcccccCchhHHHHHHHHhcCCeEEEccC--
Confidence 446776643 7999999999999999999874
Q ss_pred CeeEe----ccCCC---------hHHHhhhhhhhccccccccccccCCc
Q 004779 466 PQFLG----TSTTN---------LNDLLIQGTRWGSGLTDVGLSRFCPL 501 (731)
Q Consensus 466 ~~~~g----~aP~~---------l~~~~~Qr~RWa~G~~qi~~~~~~pl 501 (731)
+...- ..|.+ .....+...||..+..+.++. .+|-
T Consensus 253 ~~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~~~-~~p~ 300 (472)
T 1xhb_A 253 SHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYI-ISPG 300 (472)
T ss_dssp EEEEEEC------------CHHHHHHHHHHHHHHCGGGGHHHHH-TSTT
T ss_pred cEEEEEccCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh-hCcc
Confidence 33211 12221 345667777999998887764 3453
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.74 E-value=5.1e-18 Score=173.67 Aligned_cols=218 Identities=12% Similarity=0.043 Sum_probs=140.6
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCCccc
Q 004779 95 PAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICPQA 174 (731)
Q Consensus 95 P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p~~ 174 (731)
|.|+|+||| |||+ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+ +
T Consensus 1 p~vSViIp~---yn~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~d~t~~~~~~--------------~--------- 51 (255)
T 1qg8_A 1 PKVSVIMTS---YNKS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRP--------------F--------- 51 (255)
T ss_dssp CCEEEEEEE---SSCT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGG--------------G---------
T ss_pred CeEEEEEEc---CCCH-HHHHHHHHHHHhccCCc--eEEEEEECCCCchHHHHHHH--------------H---------
Confidence 789999999 9998 88999999999999995 99999999999965431110 0
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcEEEE
Q 004779 175 YFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLLVYV 254 (731)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l~yv 254 (731)
. ..|++.|+
T Consensus 52 -------------------------------------~----------------------------------~~~~i~~i 60 (255)
T 1qg8_A 52 -------------------------------------L----------------------------------NDNRVRFY 60 (255)
T ss_dssp -------------------------------------G----------------------------------GSTTEEEE
T ss_pred -------------------------------------h----------------------------------hcCCEEEE
Confidence 0 01357888
Q ss_pred eccCCCCC----CCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhc-CCCCCCcEEEEccCceec-
Q 004779 255 SREKRPEH----LHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFH- 328 (731)
Q Consensus 255 ~R~k~p~~----~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~-D~~~~~~vg~VQ~Pq~f~- 328 (731)
..+.. +. .+.++++|+|.|++. ++||||+++|+|.++. |++|.+++..+. +| ++++|.+.....
T Consensus 61 ~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~-~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 130 (255)
T 1qg8_A 61 QSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIYM-PDRLLKMVRELDTHP----EKAVIYSASKTYH 130 (255)
T ss_dssp ECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEEC-TTHHHHHHHHHHHCT----TCCEEEEEEEEEE
T ss_pred ecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCccC-hHHHHHHHHHHHhCC----CceEEEeceEEEE
Confidence 76510 00 146799999999999 8999999999999997 999999999886 34 477777766544
Q ss_pred -cCCCCchHHHHHHHHHHHHHHhhhhcCCccccceeEEEeccccccccchhhhhhhcCCchhhhhhhhhhhcccCCCCCC
Q 004779 329 -NINKYDIYDGRFRSAYCVQWQGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGEN 407 (731)
Q Consensus 329 -n~~~~d~~~~~~~~f~~~i~~g~dg~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 407 (731)
+.+.. ....... . ............+|++.++||+++..
T Consensus 131 ~~~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~rr~~~~~---------------------------------- 170 (255)
T 1qg8_A 131 LNENRD-IVKETVR----P-AAQVTWNAPCAIDHCSVMHRYSVLEK---------------------------------- 170 (255)
T ss_dssp EC---C-EEEEEEE----C-CCSCBSCCTTTSCGGGEEEETHHHHH----------------------------------
T ss_pred eCCCCc-chhhccC----c-hHHHHHhhcCCCccceEEEEHHHHHh----------------------------------
Confidence 32111 0000000 0 00001122345678899999999852
Q ss_pred chhhHHHhhcccccceeeccccccccc-cc------c-CCCccchHHHHHHHHhCCCEEEEeCCCCCeeEeccCCChHHH
Q 004779 408 FSNVLQEETGVLASCSYEHQTKWGEEV-GI------L-YQSVSEDLFTGFILHCKGWTSTYLTPFRPQFLGTSTTNLNDL 479 (731)
Q Consensus 408 ~~~~~~~~~~~v~~c~ye~~t~~g~~~-G~------~-~~svtED~~t~~rl~~~Gwrs~y~~~~~~~~~g~aP~~l~~~ 479 (731)
.+ || . .....||.+..+|+..+| +..|+++ ....+-..+.+....
T Consensus 171 -------------------------~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g-~~~~~~~-~~~~~r~~~~s~s~~ 223 (255)
T 1qg8_A 171 -------------------------VKEKFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPLDE-ELDLNYITDQSIHFQ 223 (255)
T ss_dssp -------------------------HHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEEEE-EEEEEEEC-------
T ss_pred -------------------------hcccccccccCCcccchHHHHHHHHHHHHhC-CEEEecC-cEEEEEEcCCccchh
Confidence 22 34 2 225679999999999987 6888875 233455566666655
Q ss_pred h--hhhhhhccc
Q 004779 480 L--IQGTRWGSG 489 (731)
Q Consensus 480 ~--~Qr~RWa~G 489 (731)
. +|+.||.+.
T Consensus 224 ~~~~~~~~~~~~ 235 (255)
T 1qg8_A 224 LFELEKNEFVRN 235 (255)
T ss_dssp -------CTGGG
T ss_pred HHHHHHHHHHHh
Confidence 4 555555544
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.70 E-value=1.2e-16 Score=184.30 Aligned_cols=239 Identities=15% Similarity=0.075 Sum_probs=156.3
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCC
Q 004779 92 DKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTIC 171 (731)
Q Consensus 92 ~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~ 171 (731)
+..|.|+|+||+ |||+.+.+.+||.|+++++||...++|+|+|||++|.|+.++.+.
T Consensus 109 ~~~P~vSVIIp~---yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~-------------------- 165 (570)
T 2d7i_A 109 ETLPNTSIIIPF---HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED-------------------- 165 (570)
T ss_dssp SSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH--------------------
T ss_pred CCCCCeEEEEEE---CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHH--------------------
Confidence 568999999999 999878999999999999999755699999999999773211110
Q ss_pred cccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcE
Q 004779 172 PQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLL 251 (731)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l 251 (731)
|. ...|++
T Consensus 166 -----------------------------~~-------------------------------------------~~~~~v 173 (570)
T 2d7i_A 166 -----------------------------YM-------------------------------------------ALFPSV 173 (570)
T ss_dssp -----------------------------HH-------------------------------------------TTSTTE
T ss_pred -----------------------------HH-------------------------------------------HhCCeE
Confidence 00 012468
Q ss_pred EEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcCCCCCCcEEEEccCceeccCC
Q 004779 252 VYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNIN 331 (731)
Q Consensus 252 ~yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D~~~~~~vg~VQ~Pq~f~n~~ 331 (731)
.++..++ +.++++|+|.|++. ++||+|+++|+|..++ |++|.+++..+.+.. ++ .|.....+.+.+
T Consensus 174 ~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~fLD~D~~~~-p~~L~~ll~~l~~~~---~~-vv~~~i~~~~~~ 239 (570)
T 2d7i_A 174 RILRTKK-----REGLIRTRMLGASV----ATGDVITFLDSHCEAN-VNWLPPLLDRIARNR---KT-IVCPMIDVIDHD 239 (570)
T ss_dssp EEEECSS-----CCCHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCSHHHHHHHHHCT---TE-EEEEEEEEECTT
T ss_pred EEEECCC-----CCCHHHHHHHHHHh----cCCCEEEEEcCCcccc-ccHHHHHHHHHHhCC---CE-EEeeeeeccCCC
Confidence 8887655 36799999999999 8999999999999997 999999999886432 33 232211222110
Q ss_pred CC-------chHHH--HHHHHHHHHHH--------hhhhcCCccccceeEEEeccccccccchhhhhhhcCCchhhhhhh
Q 004779 332 KY-------DIYDG--RFRSAYCVQWQ--------GMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSL 394 (731)
Q Consensus 332 ~~-------d~~~~--~~~~f~~~i~~--------g~dg~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~s~ 394 (731)
.. ..... ....++..+.. .......+..+|++.++||+++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~--------------------- 298 (570)
T 2d7i_A 240 DFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWE--------------------- 298 (570)
T ss_dssp TCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHH---------------------
T ss_pred chhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHh---------------------
Confidence 00 00000 00000000000 001112344567777888887752
Q ss_pred hhhhcccCCCCCCchhhHHHhhcccccceeeccccccccccccCCCc---cchHHHHHHHHhCCCEEEEeCCCCCeeEe-
Q 004779 395 HQSYKQNNANGENFSNVLQEETGVLASCSYEHQTKWGEEVGILYQSV---SEDLFTGFILHCKGWTSTYLTPFRPQFLG- 470 (731)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~v~~c~ye~~t~~g~~~G~~~~sv---tED~~t~~rl~~~Gwrs~y~~~~~~~~~g- 470 (731)
.+||+.+.. .||+++++|+.+.||+++|++. +...-
T Consensus 299 --------------------------------------iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~--~~v~H~ 338 (570)
T 2d7i_A 299 --------------------------------------LGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPC--SRVGHI 338 (570)
T ss_dssp --------------------------------------TTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEE--EEEEEC
T ss_pred --------------------------------------cCCCCCcccccCcchHHHHHHHHhCCCeEEEccC--eEEEEE
Confidence 446776643 6999999999999999999874 33322
Q ss_pred ---ccCCC-------hHHHhhhhhhhccccccccccccCCc
Q 004779 471 ---TSTTN-------LNDLLIQGTRWGSGLTDVGLSRFCPL 501 (731)
Q Consensus 471 ---~aP~~-------l~~~~~Qr~RWa~G~~qi~~~~~~pl 501 (731)
..|.+ .+...+...||....-+.+.. .+|-
T Consensus 339 ~r~~~~~~~~~~~~~~~n~~r~~~~W~d~~~~~~y~-~~p~ 378 (570)
T 2d7i_A 339 YRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYIYQ-RRPE 378 (570)
T ss_dssp CCSSCCSCCCSSCCHHHHHHHHHHHHCGGGHHHHHT-TCGG
T ss_pred ccccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 23322 345556667898888877764 3453
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.69 E-value=8.5e-17 Score=182.49 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=93.5
Q ss_pred CCCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccC
Q 004779 91 DDKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTI 170 (731)
Q Consensus 91 ~~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r 170 (731)
++..|.|+|+||+ |||+...+.+||.|+++++||...++|+|+|||++|.|...+.
T Consensus 62 ~~~~p~vSVIIp~---yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~--------------------- 117 (501)
T 2ffu_A 62 RVDLPATSVVITF---HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALL--------------------- 117 (501)
T ss_dssp CSSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGG---------------------
T ss_pred CcCCCCEEEEEEe---CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHH---------------------
Confidence 3568999999999 9999548999999999999997667999999999996542100
Q ss_pred CcccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCc
Q 004779 171 CPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPL 250 (731)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~ 250 (731)
...|+
T Consensus 118 ---------------------------------------------------------------------------~~~~~ 122 (501)
T 2ffu_A 118 ---------------------------------------------------------------------------GKIEK 122 (501)
T ss_dssp ---------------------------------------------------------------------------GGBTT
T ss_pred ---------------------------------------------------------------------------hcCCC
Confidence 01245
Q ss_pred EEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcC
Q 004779 251 LVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 311 (731)
Q Consensus 251 l~yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D 311 (731)
+.++..++ +.++++|+|.|++. ++||+|+++|+|..++ |++|.+++..+.+
T Consensus 123 v~vi~~~~-----n~G~~~A~N~G~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~ 173 (501)
T 2ffu_A 123 VRVLRNDR-----REGLMRSRVRGADA----AQAKVLTFLDSHCECN-EHWLEPLLERVAE 173 (501)
T ss_dssp EEEEECSS-----CCHHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCHHHHHHHHHH
T ss_pred EEEEECCC-----CcCHHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHh
Confidence 88887665 36799999999999 8999999999999987 9999999998864
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.66 E-value=2.2e-16 Score=183.52 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=154.0
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCCc
Q 004779 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICP 172 (731)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p 172 (731)
..|.|+|+||| |||+ ..+.+||.|+++++||. ++|+|+|||++|.|.+.+.+..
T Consensus 373 ~~~~vsiii~~---yn~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~~~~-------------------- 426 (625)
T 2z86_A 373 RVPLVSIYIPA---YNCS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQEHY-------------------- 426 (625)
T ss_dssp SSCSEEEEEEE---SSCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHHHHH--------------------
T ss_pred cCCeEEEEEeC---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHHHHH--------------------
Confidence 46899999999 9998 88999999999999986 9999999999997754322110
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcEE
Q 004779 173 QAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLLV 252 (731)
Q Consensus 173 ~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l~ 252 (731)
...|++.
T Consensus 427 -------------------------------------------------------------------------~~~~~i~ 433 (625)
T 2z86_A 427 -------------------------------------------------------------------------ANHPRVR 433 (625)
T ss_dssp -------------------------------------------------------------------------TTCTTEE
T ss_pred -------------------------------------------------------------------------hhCCcEE
Confidence 0123577
Q ss_pred EEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhc-CCCCCCcEEEEccCceeccCC
Q 004779 253 YVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHL-DPKISSSLAFVQFPQKFHNIN 331 (731)
Q Consensus 253 yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~-D~~~~~~vg~VQ~Pq~f~n~~ 331 (731)
++. ++ +.++++|+|.|++. ++||||+++|+|.++. |+.|.+++..|. +| ++++|.+...+.+.+
T Consensus 434 ~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~~-~~~l~~~~~~~~~~~----~~~~v~~~~~~~~~~ 498 (625)
T 2z86_A 434 FIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFLE-PDAVELCLDEFRKDL----SLACVYTTNRNIDRE 498 (625)
T ss_dssp EEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEEC-TTHHHHHHHHHHHCT----TCSEEEEEEEEECTT
T ss_pred EEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCcccC-hhHHHHHHHHHHhCC----CeeEEEeeeEEECCC
Confidence 775 33 46899999999999 8999999999999987 999999998774 55 477787766554432
Q ss_pred CCchHHHHHHHHHHHHHHhhhhcCCccccceeEEEeccccccccchhhhhhhcCCchhhhhhhhhhhcccCCCCCCchhh
Q 004779 332 KYDIYDGRFRSAYCVQWQGMDGLKGPVLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGENFSNV 411 (731)
Q Consensus 332 ~~d~~~~~~~~f~~~i~~g~dg~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 411 (731)
... ...... +. ....+......++|++.++||+++..
T Consensus 499 ~~~-~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~r~~~~~-------------------------------------- 535 (625)
T 2z86_A 499 GNL-ISNGYN--WP--IYSREKLTSAMICHHFRMFTARAWNL-------------------------------------- 535 (625)
T ss_dssp SCE-EEECCC--CS--SCCHHHHTTSCCCCSCEEEEHHHHTT--------------------------------------
T ss_pred CCE-eccCcc--cc--cCCHHHHhhcccCCceEEEEHHHHHH--------------------------------------
Confidence 110 000000 00 00011123456788899999998852
Q ss_pred HHHhhcccccceeeccccccccccccCC-CccchHHHHHHHHhCCCEEEEeCCCCCeeE---eccCCChHHHhhhhhhhc
Q 004779 412 LQEETGVLASCSYEHQTKWGEEVGILYQ-SVSEDLFTGFILHCKGWTSTYLTPFRPQFL---GTSTTNLNDLLIQGTRWG 487 (731)
Q Consensus 412 ~~~~~~~v~~c~ye~~t~~g~~~G~~~~-svtED~~t~~rl~~~Gwrs~y~~~~~~~~~---g~aP~~l~~~~~Qr~RWa 487 (731)
.+||+.. ...||.++.+|+.++| +..|+++ +... .....+......|+.+|.
T Consensus 536 ---------------------~ggfd~~~~~~eD~dl~~r~~~~g-~~~~~~~--~~~~~r~h~~~~s~~~~~~~~~~~~ 591 (625)
T 2z86_A 536 ---------------------TEGFNESISNAVDYDMYLKLSEVG-PFKHINK--ICYNRVLHGENTSIKKLDIQKENHF 591 (625)
T ss_dssp ---------------------TTCCCSSCSSCHHHHHHHHHTTTS-CEEEEEE--EEEEEECC----CCSSHHHHHHHHH
T ss_pred ---------------------hCCCCCccCChHHHHHHHHHHHhC-CEEEeCC--cEEEEEECCCccchhhHHHHHHHHH
Confidence 4577765 4679999999999999 8899875 4443 334456666667776665
Q ss_pred ccccccc
Q 004779 488 SGLTDVG 494 (731)
Q Consensus 488 ~G~~qi~ 494 (731)
+...+.+
T Consensus 592 ~~~~~~l 598 (625)
T 2z86_A 592 KVVNESL 598 (625)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5443333
No 9
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.63 E-value=1.3e-15 Score=163.68 Aligned_cols=123 Identities=15% Similarity=-0.010 Sum_probs=92.2
Q ss_pred CCCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCC
Q 004779 92 DKLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTIC 171 (731)
Q Consensus 92 ~~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~ 171 (731)
...|.|+|+||+ |||+ +.+.++|.++++++||. ..+|+|+|||++|.|.+.+.+ ++.+
T Consensus 45 ~~~~~vSViIp~---yN~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~--------------~~~~--- 102 (329)
T 3ckj_A 45 KAGRTISVVLPA---LDEE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVA--------------AGAR--- 102 (329)
T ss_dssp TTTCCEEEEEEE---SSCT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHH--------------TTCE---
T ss_pred ccCCcEEEEEee---CCCH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHHH--------------hhhh---
Confidence 345899999999 9998 78999999999999994 489999999999987643211 1000
Q ss_pred cccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcE
Q 004779 172 PQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLL 251 (731)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l 251 (731)
. .+.+
T Consensus 103 ---------------------------------------------------~------------------------~~~~ 107 (329)
T 3ckj_A 103 ---------------------------------------------------V------------------------VSRE 107 (329)
T ss_dssp ---------------------------------------------------E------------------------EEHH
T ss_pred ---------------------------------------------------h------------------------ccce
Confidence 0 0001
Q ss_pred EEEe-ccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCC-CCChHHHHHHHHHh-cCCCCCCcEEEEccCc
Q 004779 252 VYVS-REKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFH-LDPKISSSLAFVQFPQ 325 (731)
Q Consensus 252 ~yv~-R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~-~~~p~~l~~~v~~f-~D~~~~~~vg~VQ~Pq 325 (731)
.++. .++ +.||++|+|.|++. ++||||+++|+|.+ +. |++|.+++..+ .+| ++++|++..
T Consensus 108 ~~~~~~~~-----n~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-p~~l~~l~~~l~~~~----~~~~v~g~~ 170 (329)
T 3ckj_A 108 QALPEVPI-----RPGKGEALWRSLAA----SRGDIVVFVDSDLINPH-PMFVPWLVGPLLTGD----GVHLVKSFY 170 (329)
T ss_dssp HHCTTSCC-----CCSHHHHHHHHHHH----CCCSEEEECCTTEESCC-TTHHHHHHHHHHSCS----SCCEEEEEE
T ss_pred eeeccCCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCCCcC-hHHHHHHHHHHHhCC----CccEEEEEe
Confidence 1111 122 46899999999999 89999999999998 66 99999999875 455 477776643
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.50 E-value=4.5e-14 Score=165.34 Aligned_cols=124 Identities=17% Similarity=0.094 Sum_probs=90.6
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCe-EEEEEcCCCCccch-hhHHHHHHhhhcchhhhhhcCcccC
Q 004779 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKL-HVYLSDDGGSPITL-HGMREACRFAKWWLPFCRRYGIKTI 170 (731)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl-~v~v~DDg~~~~T~-~~l~Ea~~fa~~w~pfc~~~~v~~r 170 (731)
.-|+|+|+||| ||++ +.+.++|.|+++++|+.++. +|+|+|||++|.+- ..+.|.
T Consensus 178 ~~pkVSVVIpt---YN~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~------------------- 234 (657)
T 4fix_A 178 GTANIAVGIPT---FNRP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAA------------------- 234 (657)
T ss_dssp SCCCEEEECCB---SSCH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHH-------------------
T ss_pred CCCeEEEEEEe---cCCH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHH-------------------
Confidence 35899999999 9998 88999999999999965545 99999999987321 111110
Q ss_pred CcccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCc
Q 004779 171 CPQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPL 250 (731)
Q Consensus 171 ~p~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~ 250 (731)
.++ ..|+
T Consensus 235 ------------------------------~~~-------------------------------------------~~~~ 241 (657)
T 4fix_A 235 ------------------------------AAR-------------------------------------------LGSR 241 (657)
T ss_dssp ------------------------------HHH-------------------------------------------HGGG
T ss_pred ------------------------------HHh-------------------------------------------cCCC
Confidence 000 0125
Q ss_pred EEEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcCCCCCCcEEEEc
Q 004779 251 LVYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQ 322 (731)
Q Consensus 251 l~yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D~~~~~~vg~VQ 322 (731)
+.++..+ +.|.|++.|.|++.+-...++|+|+++|+|.++. |++|.+++.++.+. ++++.|+
T Consensus 242 I~vI~~~------N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~-pd~L~~ll~~l~~~---~~~~~vg 303 (657)
T 4fix_A 242 LSIHDQP------NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLE-PDSILRVLAMHRFA---KAPMLVG 303 (657)
T ss_dssp EEEEECC------CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEEC-THHHHHHHHHHHHB---SSCCEEE
T ss_pred EEEEECC------CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccC-hhHHHHHHHHHHhC---CCcEEEE
Confidence 7888643 3679999999998731101679999999999998 99999999988632 2355554
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.49 E-value=2.2e-15 Score=178.58 Aligned_cols=194 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCCccc
Q 004779 95 PAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTICPQA 174 (731)
Q Consensus 95 P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~p~~ 174 (731)
|.|+|+||| ||++ +.+.+||.|+++++||. ++|+|+|||++|.|.+.+.+.+
T Consensus 2 p~vSVIIp~---yN~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgStD~t~~il~~~~---------------------- 53 (729)
T 3l7i_A 2 NKLTIIVTY---YNAE-EYITGCLESIKQQRTQD--FNLIIVNDGSTDQSKKLMDEAI---------------------- 53 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEc---CCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCCCcHHHHHHHHH----------------------
Confidence 789999999 9998 88999999999999995 8999999999997764322210
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcEEEE
Q 004779 175 YFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLLVYV 254 (731)
Q Consensus 175 yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l~yv 254 (731)
+.|+ +++.++
T Consensus 54 ------------------------~~~~----------------------------------------------~~i~~i 63 (729)
T 3l7i_A 54 ------------------------KDYD----------------------------------------------KNIRFI 63 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------HhCC----------------------------------------------CCEEEE
Confidence 0000 136666
Q ss_pred eccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcCCCCCCcEEEEccCceeccCCCCc
Q 004779 255 SREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYD 334 (731)
Q Consensus 255 ~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D~~~~~~vg~VQ~Pq~f~n~~~~d 334 (731)
..++ +.|+++|.|.|++. ++||+|+++|+|.++. |++|.+++..+.++ ++.+... ..+.+. . .
T Consensus 64 ~~~~-----n~G~~~arN~gi~~----A~gdyI~flD~Dd~~~-p~~l~~l~~~l~~~----d~v~~~~-~~~~~~-~-~ 126 (729)
T 3l7i_A 64 DLDE-----NSGHAHARNIALEE----VETPYFMFLDADDELA-SYAITFYLEKFNNT----DGLIAPI-HSFTTQ-R-P 126 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCC-----CCCHHHHHHHHHHh----ccCCEEEEECCCCCCC-hhHHHHHHHHhcCC----CEEEEee-EEeecC-C-C
Confidence 5554 46799999999999 8999999999999997 99999999988743 2333322 122211 1 1
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCc--cccceeEEEeccccccccchhhhhhhcCCchhhhhhhhhhhcccCCCCCCchhhH
Q 004779 335 IYDGRFRSAYCVQWQGMDGLKGP--VLSGTGYYIKRESLYADFTHTELKDTFGKSNVLINSLHQSYKQNNANGENFSNVL 412 (731)
Q Consensus 335 ~~~~~~~~f~~~i~~g~dg~~~~--~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 412 (731)
.+.......... ..+.+..... ...|.+.++||+++..
T Consensus 127 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rr~~l~~--------------------------------------- 166 (729)
T 3l7i_A 127 QFVDLDRVRVEY-FNAKENINSFLRKQSACNIIFRTAIVRA--------------------------------------- 166 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeee-ecchhhHHHHhhccchhheeeeHHHHHH---------------------------------------
Confidence 111000000000 0011111111 2356678999999852
Q ss_pred HHhhcccccceeeccccccccc-cccCC-CccchHHHHHHHHhCCCEEEEeCC
Q 004779 413 QEETGVLASCSYEHQTKWGEEV-GILYQ-SVSEDLFTGFILHCKGWTSTYLTP 463 (731)
Q Consensus 413 ~~~~~~v~~c~ye~~t~~g~~~-G~~~~-svtED~~t~~rl~~~Gwrs~y~~~ 463 (731)
.+ ||+.+ ...||.+..+++..+|+++.|+++
T Consensus 167 --------------------~gl~fde~~~~~ED~d~~~rl~~~g~~i~~~~~ 199 (729)
T 3l7i_A 167 --------------------HHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFN 199 (729)
T ss_dssp -----------------------------------------------------
T ss_pred --------------------cCCCcCCCCCcccCHHHHHHHHHhcCCEEEecC
Confidence 23 67766 478999999999999999999943
No 12
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.40 E-value=4.5e-13 Score=141.74 Aligned_cols=63 Identities=10% Similarity=-0.151 Sum_probs=45.5
Q ss_pred cccccCCCc---cchHHHHHHHHhCCCEEEEeCCCCCe----------eEeccCCChHHHhhhhhhhccccccccc
Q 004779 433 EVGILYQSV---SEDLFTGFILHCKGWTSTYLTPFRPQ----------FLGTSTTNLNDLLIQGTRWGSGLTDVGL 495 (731)
Q Consensus 433 ~~G~~~~sv---tED~~t~~rl~~~Gwrs~y~~~~~~~----------~~g~aP~~l~~~~~Qr~RWa~G~~qi~~ 495 (731)
.+||+..-. .||.+++.|++.+||++.+.++.... .....|+.+....+||.||+++.+..+.
T Consensus 189 vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~~ 264 (287)
T 2fy7_A 189 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLT 264 (287)
T ss_dssp TTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGCC
T ss_pred cCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccCc
Confidence 457776543 59999999999999987743220011 1235789999999999999999998773
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=99.37 E-value=3e-12 Score=140.92 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=88.0
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHc--CCCCCCCeEEEEEcCCCCccchhhHHHHHHhhhcchhhhhhcCcccCC
Q 004779 94 LPAIDVFICTADPEKEPAIGVMNTVLSAMA--LDYPVDKLHVYLSDDGGSPITLHGMREACRFAKWWLPFCRRYGIKTIC 171 (731)
Q Consensus 94 ~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~--~dYP~~kl~v~v~DDg~~~~T~~~l~Ea~~fa~~w~pfc~~~~v~~r~ 171 (731)
.|.|+|+||| |||+ +.+.++|.++.+ .+||.+ .+|+|+||||+|.|.+.+.+ ++.+
T Consensus 93 ~p~vSVVIP~---yNe~-~~l~~~l~sl~~~l~~~~~~-~EIIVVDDgStD~T~~i~~~--------------~~~~--- 150 (387)
T 3f1y_A 93 GLTVSAVLPS---RNVA-DTVGGIIDEIHALNERAPLI-DQILVVDADSEDGTAGVAAS--------------HGAE--- 150 (387)
T ss_dssp TCCEEEEEEE---SSCT-TTHHHHHHHHHHHHHHSCCC-SEEEEEECSCSSSHHHHHHH--------------TTCE---
T ss_pred CCeEEEEEEc---CCCH-HHHHHHHHHHHHHHhcCCCC-eEEEEEcCcCCccHHHHHHH--------------hCch---
Confidence 5899999999 9998 889999999987 477743 79999999999987643211 1100
Q ss_pred cccccccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcchhhhhhcccCcchhhhhccccCCCcE
Q 004779 172 PQAYFSEADSDDYFGDSEFMVEKKKIKEKYEMFEEHVTKAVEDGEYGNSQNHSTIIEIIQETFGESETIRQADLVEMPLL 251 (731)
Q Consensus 172 p~~yf~~~~~~~~~~~~~~~~e~~~~k~~y~~~~~ri~~~~~~~~~~~~~~h~~i~~v~~~~~~~~~~~~~~~~~~~P~l 251 (731)
++. +.+
T Consensus 151 ---------------------------------------------------------v~~-----------------~~~ 156 (387)
T 3f1y_A 151 ---------------------------------------------------------VYS-----------------ENE 156 (387)
T ss_dssp ---------------------------------------------------------EEE-----------------GGG
T ss_pred ---------------------------------------------------------hcc-----------------cce
Confidence 000 000
Q ss_pred EEEeccCCCCCCCCChHHHHHHHHHhcCCCCCCCEEEEeCCCCC-CCChHHHHHHHHHhc-CCCCCCcEEEEcc
Q 004779 252 VYVSREKRPEHLHHFKAGALNVLLRVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFHL-DPKISSSLAFVQF 323 (731)
Q Consensus 252 ~yv~R~k~p~~~~~~KAGaLN~~l~~s~~~t~g~~il~lDaD~~-~~~p~~l~~~v~~f~-D~~~~~~vg~VQ~ 323 (731)
+++.+++ +.+|++|+|.|++. ++||+|+++|||.. ++ |++|.+++..+. +|+ +++|.+
T Consensus 157 ~~i~~~~-----n~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~-p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 157 LMSGYGD-----AHGKGDAMWRALSV----TRGDLVLYIDADTRDFR-PQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp TTGGGCS-----CCSHHHHHHHHTTT----CCSSEEEECCTTCSSCC-THHHHTTHHHHHHSTT----CCEEEE
T ss_pred eEecCCc-----cCCHHHHHHHHHHh----cCCCEEEEEcCCCCcCC-HHHHHHHHHHHHHCCC----ceEEEE
Confidence 1112222 46899999999999 89999999999999 66 999999998774 443 556654
No 14
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=99.07 E-value=1.4e-09 Score=112.03 Aligned_cols=50 Identities=6% Similarity=-0.077 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcCC-CCCCcEEEE
Q 004779 267 KAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDP-KISSSLAFV 321 (731)
Q Consensus 267 KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D~-~~~~~vg~V 321 (731)
.|+|+|.|++. ++|||++++|+|.+++ |++|.+++.++.+. ..++++|.|
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~~-~~~l~~l~~~~~~~~~~~~~vg~v 112 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVELV-DRGYDDLVAAIEALEEADPKWLVA 112 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEECS-SCCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHhcccCCCCeeEE
Confidence 46789999999 8999999999999996 99999999988630 001247776
No 15
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=98.65 E-value=3.3e-07 Score=100.98 Aligned_cols=42 Identities=19% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCChHHHHHHHH----HhcCCCCCCCEEEEeCCCCC-CCChHHHHHHHHHhc
Q 004779 264 HHFKAGALNVLL----RVSGVISNSPYILGLDCDMY-CNDPTSARQAMCFHL 310 (731)
Q Consensus 264 ~~~KAGaLN~~l----~~s~~~t~g~~il~lDaD~~-~~~p~~l~~~v~~f~ 310 (731)
+.||.+|+|+|+ +. ++||+|+++|||.. .+ |+.+.+++....
T Consensus 73 n~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~-P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLEE----TQWERIHFYDADITSFG-PDWITKAEEAAD 119 (397)
T ss_dssp SSSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 468999999999 77 89999999999986 45 999999888764
No 16
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=97.96 E-value=3.1e-05 Score=84.65 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHhcCCCC---CCCEEEEeCCCCCCCChHHHHHHHH
Q 004779 265 HFKAGALNVLLRVSGVIS---NSPYILGLDCDMYCNDPTSARQAMC 307 (731)
Q Consensus 265 ~~KAGaLN~~l~~s~~~t---~g~~il~lDaD~~~~~p~~l~~~v~ 307 (731)
+||..||-+++.+ + +|++|+++|||-+ .|..+.+.+.
T Consensus 143 ~GKG~Am~aGl~~----A~~~~gd~Vv~~DaDl~--iP~~v~~~~k 182 (394)
T 2zu9_A 143 SGKGEGMLVGLLL----AKAIGAEYVGFVDADNY--IPGAVNEYVK 182 (394)
T ss_dssp CSHHHHHHHHHHH----HHHTTCSEEEECCSCBS--CHHHHHHHHH
T ss_pred CChHHHHHHHHHH----HhhCCCCEEEEEeCCCC--CHHHHHHHHH
Confidence 5899999999998 7 8999999999995 3888866553
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=97.88 E-value=1e-05 Score=87.39 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=39.3
Q ss_pred CCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCc
Q 004779 94 LPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSP 142 (731)
Q Consensus 94 ~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~ 142 (731)
++.+.|+|+| ||-| + +++++.++++++.+.++..|+|+|||+.+
T Consensus 1 ~~~~pViI~~---yNRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIA---CDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEE---SSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEE---CCcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 3567899999 9999 7 99999999999977778899999999976
No 18
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=97.80 E-value=0.00013 Score=78.09 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=37.2
Q ss_pred CCCceEEEEecCCCCCCchHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCccch
Q 004779 93 KLPAIDVFICTADPEKEPAIGVMNTVLSAMALDYPVDKLHVYLSDDGGSPITL 145 (731)
Q Consensus 93 ~~P~VdV~I~t~~pynEp~~~v~~Tv~s~l~~dYP~~kl~v~v~DDg~~~~T~ 145 (731)
....++|+||+ |||+. +++.+++++.|.. .+|+|+|||+.|.|.
T Consensus 51 i~~klSIVVPv---YNEe~----~lLesVl~qi~~d--~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 51 VLEQTAIVVPT---RNERL----KLLEGVLSGIPHE--ALILVASNSSPDRFQ 94 (391)
T ss_dssp HHTTEEEEEEE---SSCCH----HHHHHHHHTSCTT--SEEEEEECCCHHHHH
T ss_pred HHhceEEEEec---cCcHH----HHHHHHHhcCCCC--ceEEEEECCCCCChH
Confidence 35789999999 99994 4688899998764 899999999988663
No 19
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=89.63 E-value=1.2 Score=46.27 Aligned_cols=53 Identities=15% Similarity=-0.096 Sum_probs=35.9
Q ss_pred cchHHHHHHHHhCCCEEEEeCC-C--C-CeeE---------eccCCChHHHhhhhhhhcccccccc
Q 004779 442 SEDLFTGFILHCKGWTSTYLTP-F--R-PQFL---------GTSTTNLNDLLIQGTRWGSGLTDVG 494 (731)
Q Consensus 442 tED~~t~~rl~~~Gwrs~y~~~-~--~-~~~~---------g~aP~~l~~~~~Qr~RWa~G~~qi~ 494 (731)
-||.+...|+..+|.++.-... . + ..+. ...|......-.+++||..+.+..+
T Consensus 185 gEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~~k~~~~~~~~~~r~~~dGLnsl 250 (287)
T 3lw6_A 185 LEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNV 250 (287)
T ss_dssp SHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCCCCCTTHHHHHTSCCSSCSGGGC
T ss_pred ccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcccchhhhhhhhcEEccCCCCeee
Confidence 6999999999999998754321 0 0 0111 1234455566788999999888876
No 20
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=43.23 E-value=43 Score=33.20 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHhcC
Q 004779 267 KAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLD 311 (731)
Q Consensus 267 KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D 311 (731)
....+-+|++......+.+++++.|||+=.-+++.+++++..+.+
T Consensus 83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 356677777763210125899999999755559999999987764
No 21
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=35.39 E-value=68 Score=30.45 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHhcCCCCCCCEEEEeCCCC-CCCChHHHHHHHHHh
Q 004779 265 HFKAGALNVLLRVSGVISNSPYILGLDCDM-YCNDPTSARQAMCFH 309 (731)
Q Consensus 265 ~~KAGaLN~~l~~s~~~t~g~~il~lDaD~-~~~~p~~l~~~v~~f 309 (731)
.+-++++-.|++.. .+.+.+++++||+ .++ ++.+++++..+
T Consensus 71 ~G~~~si~~al~~~---~~~~~vlv~~~D~P~i~-~~~i~~l~~~~ 112 (197)
T 3d5n_A 71 EGISTSLKLGLRFF---KDYDAVLVALGDMPFVT-KEDVNKIINTF 112 (197)
T ss_dssp GCHHHHHHHHHHHT---TTSSEEEEEETTCCCSC-HHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhh---ccCCcEEEEeCCccccC-HHHHHHHHHHh
Confidence 35688888898872 2348999999999 445 89999888766
No 22
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=27.69 E-value=67 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCCCEEEEeCCCCCCCChHHHHHHHHHhcCCC
Q 004779 282 SNSPYILGLDCDMYCNDPTSARQAMCFHLDPK 313 (731)
Q Consensus 282 t~g~~il~lDaD~~~~~p~~l~~~v~~f~D~~ 313 (731)
.+.++++..|.|++++ .+-|.+.+..+ ||+
T Consensus 92 ~~~~Wf~~~DDDtyv~-~~nL~~~L~~~-d~~ 121 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVN-PKALLQLLKTF-PQD 121 (280)
T ss_dssp HTCSEEEEEETTEEEC-HHHHHHHHTTS-CTT
T ss_pred CCCcEEEEeCCCcEEc-HHHHHHHHHhC-CCC
Confidence 4899999999999997 88888877654 554
No 23
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=21.50 E-value=1.2e+02 Score=28.90 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHhcCCCCCCCEEEEeCCCCCCCChHHHHHHHHHh
Q 004779 266 FKAGALNVLLRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFH 309 (731)
Q Consensus 266 ~KAGaLN~~l~~s~~~t~g~~il~lDaD~~~~~p~~l~~~v~~f 309 (731)
..++++.+|++.. .+.+.+++++||+-.-+++.+++++..+
T Consensus 78 ~~~~~i~~al~~~---~~~~~vlv~~~D~P~~~~~~i~~l~~~~ 118 (223)
T 2xwl_A 78 DRTESVALALEAA---GDAEFVLVHDAARALTPPALIARVVAAL 118 (223)
T ss_dssp SHHHHHHHHHTTC---TTCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence 3688899999872 1678999999999433388999999877
No 24
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=21.45 E-value=1e+02 Score=29.52 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhcCCCCCCCEEEEeCCCC-CCCChHHHHHHHHHhcC
Q 004779 265 HFKAGALNVLLRVSGVISNSPYILGLDCDM-YCNDPTSARQAMCFHLD 311 (731)
Q Consensus 265 ~~KAGaLN~~l~~s~~~t~g~~il~lDaD~-~~~~p~~l~~~v~~f~D 311 (731)
.+.++.++ +++. .+.+.+++++||+ ..+ ++.+++++..+.+
T Consensus 72 ~g~~~~~~-~~~~----~~~~~vlv~~~D~P~~~-~~~i~~l~~~~~~ 113 (234)
T 2y6p_A 72 SGSDRVLY-VVRD----LDVDLIINYQGDEPFVY-EEDIKLIFRELEK 113 (234)
T ss_dssp SHHHHHHH-HHTT----CCCSEEEECCTTCCCCC-HHHHHHHHHHHHH
T ss_pred cchHHHHH-HHHh----CCCCEEEEecCCcCcCC-HHHHHHHHHHHHh
Confidence 56777774 5555 4678999999999 765 8999999987753
No 25
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=21.35 E-value=76 Score=31.25 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHhcCC---CCCCCEEEEeCCCCCCCChHHHHHHHHHhcC
Q 004779 266 FKAGALNVLLRVSGV---ISNSPYILGLDCDMYCNDPTSARQAMCFHLD 311 (731)
Q Consensus 266 ~KAGaLN~~l~~s~~---~t~g~~il~lDaD~~~~~p~~l~~~v~~f~D 311 (731)
...+++-+|++.... ..+.++|++.|||+-.-+++.+++++..+.+
T Consensus 84 ~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~ 132 (246)
T 3f1c_A 84 DRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALE 132 (246)
T ss_dssp SHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHh
Confidence 456777777765210 0136899999999843348999999987754
No 26
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.30 E-value=76 Score=22.19 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004779 23 HALLHCIAIGFLIYYRAS 40 (731)
Q Consensus 23 ~~~~~~~~~~~yl~wR~~ 40 (731)
++++.++++.-+++||-.
T Consensus 16 l~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 16 LVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCceeEEEccc
Confidence 344455556668999865
No 27
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=20.12 E-value=1.1e+02 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHhcCCCCCCCEEEEeCCCC-CCCChHHHHHHHHH
Q 004779 265 HFKAGALNVLLRVSGVISNSPYILGLDCDM-YCNDPTSARQAMCF 308 (731)
Q Consensus 265 ~~KAGaLN~~l~~s~~~t~g~~il~lDaD~-~~~~p~~l~~~v~~ 308 (731)
.+-++++-.+++. .+.+.+++++||+ .++ ++.+++++..
T Consensus 77 ~G~~~si~~~l~~----~~~~~vlv~~~D~P~i~-~~~i~~l~~~ 116 (201)
T 1e5k_A 77 PGPLAGMLSVMQQ----EAGEWFLFCPCDTPYIP-PDLAARLNHQ 116 (201)
T ss_dssp CSHHHHHHHHHHH----CCSSEEEEEETTCTTCC-TTHHHHHHHT
T ss_pred CCHHHHHHHHHHh----CCCCcEEEEeCCcCcCC-HHHHHHHHhh
Confidence 4688999999988 5679999999999 445 7888888765
Done!