Query 004781
Match_columns 731
No_of_seqs 147 out of 193
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 12:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2203 GTP-binding protein [G 100.0 3E-199 7E-204 1604.0 63.6 663 1-679 80-748 (772)
2 PF05879 RHD3: Root hair defec 100.0 3E-178 6E-183 1551.9 70.3 666 1-684 37-721 (742)
3 cd01851 GBP Guanylate-binding 99.8 1.7E-18 3.6E-23 178.1 8.8 146 8-159 59-223 (224)
4 PF02263 GBP: Guanylate-bindin 96.7 0.0045 9.7E-08 65.6 7.7 143 8-160 73-254 (260)
5 PF05879 RHD3: Root hair defec 93.8 6 0.00013 48.4 21.6 96 209-312 296-392 (742)
6 PF04286 DUF445: Protein of un 75.8 1.2E+02 0.0027 32.8 20.4 13 401-413 252-264 (367)
7 PF14023 DUF4239: Protein of u 71.0 23 0.00051 36.0 9.1 63 595-662 131-203 (209)
8 KOG1916 Nuclear protein, conta 64.2 2.7E+02 0.0059 35.2 16.9 20 140-159 773-792 (1283)
9 PF14147 Spore_YhaL: Sporulati 63.2 6.6 0.00014 32.0 2.5 20 599-618 1-20 (52)
10 PF04136 Sec34: Sec34-like fam 60.4 1E+02 0.0022 30.5 10.9 113 185-301 35-155 (157)
11 KOG2203 GTP-binding protein [G 51.2 5.2E+02 0.011 31.2 20.4 55 240-294 397-455 (772)
12 KOG1916 Nuclear protein, conta 49.6 6.7E+02 0.014 32.0 20.8 69 378-446 1044-1116(1283)
13 PRK13603 fumarate reductase su 42.3 39 0.00084 32.5 4.4 29 611-639 52-83 (126)
14 PRK04987 fumarate reductase su 38.9 64 0.0014 31.3 5.3 30 611-640 56-88 (130)
15 cd00546 QFR_TypeD_subunitC Qui 36.2 55 0.0012 31.5 4.4 29 611-639 52-83 (124)
16 PF10658 DUF2484: Protein of u 32.6 53 0.0011 29.1 3.4 22 602-626 51-72 (77)
17 PF09731 Mitofilin: Mitochondr 32.6 9E+02 0.02 28.6 25.9 40 457-498 492-532 (582)
18 PF01788 PsbJ: PsbJ; InterPro 32.3 46 0.001 25.8 2.6 13 596-608 5-17 (40)
19 PF01031 Dynamin_M: Dynamin ce 30.7 7E+02 0.015 26.8 14.7 186 321-507 33-265 (295)
20 PF02300 Fumarate_red_C: Fumar 27.2 99 0.0021 30.0 4.5 30 612-641 56-88 (129)
21 KOG3637 Vitronectin receptor, 23.6 44 0.00095 42.6 1.9 33 597-646 974-1006(1030)
22 PF04191 PEMT: Phospholipid me 23.2 42 0.0009 30.1 1.2 19 617-635 49-67 (106)
23 PF07464 ApoLp-III: Apolipopho 23.0 7.7E+02 0.017 24.6 11.5 71 297-368 6-81 (155)
24 PF08627 CRT-like: CRT-like; 22.1 3.5E+02 0.0075 26.4 7.0 39 559-610 29-67 (130)
25 PF03208 PRA1: PRA1 family pro 21.6 1.8E+02 0.0038 28.2 5.3 35 602-640 44-78 (153)
No 1
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=100.00 E-value=3.4e-199 Score=1604.04 Aligned_cols=663 Identities=62% Similarity=0.989 Sum_probs=641.9
Q ss_pred CCccCCCCCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHhhhhheeeccccccccccccCchhHHHHHHHHHhhcCCC
Q 004781 1 MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 80 (731)
Q Consensus 1 ~~~~~~~~~~~lVmDvEGTDgrERGED~q~FErksALFALA~SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~LF~~~ 80 (731)
||||.|++||||||||||||||||||| |+|||||||||+|+|||+|||||||||||||||||+||||||||||+||+|+
T Consensus 80 lar~~~i~p~i~vmDvEGTDGrERGED-qdFErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~r 158 (772)
T KOG2203|consen 80 LARCAGIEPCILVMDVEGTDGRERGED-QDFERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPR 158 (772)
T ss_pred HHhhcCCCCceEEEecccCCccccccc-ccHHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCC
Confidence 699999999999999999999999999 9999999999999999999999999999999999999999999999999997
Q ss_pred c--eEEEEEeeCC-CCCChhchhHHHHHHHHHHhhhCCCCCCCCCCCCcceEEEEEeecCCccccHHHHHHHHHHHHHhc
Q 004781 81 K--TTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRF 157 (731)
Q Consensus 81 K--t~LLFVIRD~-~~tple~L~~~l~~dl~~IW~~v~KP~~~~~~~l~DfFd~~f~~LpHk~lq~e~F~~~v~~Lr~rF 157 (731)
| |+|||||||| +.||+|+|+++|++||+|||++|+||++|++++|+|||||+|+|||||++++++|.++|+.||+||
T Consensus 159 k~k~~LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrF 238 (772)
T KOG2203|consen 159 KNKTLLLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRF 238 (772)
T ss_pred CCceEEEEEEecccCCCchHHhhHHHHHHHHHHHHhcCCcccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHH
Confidence 6 9999999999 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCCCCCCCCCCCccCCChhhhHHHHHHHhhhcCCCCCchhHHHHHhhchHHHHHHHHHhhhhhhhHHHHHHHHhc
Q 004781 158 YHS-VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQS 236 (731)
Q Consensus 158 ~~~-~~~~~l~~~~~~~iP~dG~~~ya~~iWe~I~~NkDLDLPtqq~mlA~~RCdEI~~e~l~~f~~~~~~~~l~~~v~~ 236 (731)
+++ +.|.+++++||++||||||++|+++||++|++||||||||||+|||+|||+||++|+++.|.+++.|..+.+.++.
T Consensus 239 v~s~~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g 318 (772)
T KOG2203|consen 239 VHSGISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQG 318 (772)
T ss_pred HhcCCCCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcC
Confidence 998 8888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004781 237 GPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEG 316 (731)
Q Consensus 237 g~v~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~f~~~L~~l~~~~l~~fk~~l~~~l~~~~~ 316 (731)
|.+++||+++..|+++||++||++|+||+++||++||++|..++++.++|.|+.+|+|||..++++||.++++.++.+++
T Consensus 319 ~l~s~l~~kL~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~g 398 (772)
T KOG2203|consen 319 NLVSGLGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEG 398 (772)
T ss_pred CCccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHhhcC
Q 004781 317 FSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDG 396 (731)
Q Consensus 317 F~~~~~~~~~~~~~~F~~~~~~~~i~~~~w~~s~~~~~l~~~l~~~~~~~R~~~l~~l~~~~~k~l~~~l~~~v~~ll~~ 396 (731)
|++++..+.++|+..|+++|+++.++|+.|+.++++.+|.++|++|+.++|..+|++++..+++++..++++||+.+|++
T Consensus 399 F~es~~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~ 478 (772)
T KOG2203|consen 399 FSESVADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDG 478 (772)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhhhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccc
Q 004781 397 ANNETWPAIRKLLRCETESAISGFSDALYGFD--MDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSH 474 (731)
Q Consensus 397 ~~~d~W~~I~~~f~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~lr~~a~~~l~~~i~e~a~~ll~~lkdrFe~~Fry 474 (731)
++.++||.|+++|++....++..+++.+.||+ +++++++++++.||.+||..++.|+||++++++++||+||+++|||
T Consensus 479 ~s~evW~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~ 558 (772)
T KOG2203|consen 479 ASKEVWDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEETRDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRY 558 (772)
T ss_pred cccccHHHHHHHHHhccchhHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCccchHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhhhhccCCCCCccccCCCCCCCCCCCCccCCC
Q 004781 475 DSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQV 554 (731)
Q Consensus 475 D~~g~PR~W~~~ddI~~if~~Ar~~aL~lL~vla~~Rl~d~~~~i~~~l~~~l~d~~~~~~~~~~~~~~dpl~~~~~~~~ 554 (731)
|.|||||+|++++||++||+.||++||+||+||+.||++|+ |+.+|+.++.+...+.+++ +.+.||++++
T Consensus 559 Dsd~mPrlWk~kedI~~~~r~ar~~aL~llsVla~irlsDn---ie~~l~v~l~~~e~~~~s~--i~t~d~lass----- 628 (772)
T KOG2203|consen 559 DSDGMPRLWKGKEDIDAITRVARSAALKLLSVLAVIRLSDN---IEKTLTVALADEESNETSS--IYTNDPLASS----- 628 (772)
T ss_pred cCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHhheecCC---ccccCccccccCCCCCCCc--ccccCccccC-----
Confidence 99999999999999999999999999999999999999975 4555677888877654443 5578999866
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCcHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 004781 555 PSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLL 634 (731)
Q Consensus 555 ~~~~~lLs~~~~~~i~~qFk~e~~~~~~~Al~~qEakRs~~~~~iP~W~~~ll~vLGwNEfmavLrNPl~l~l~lv~~~~ 634 (731)
.+++|||||.||++||+||| +++|++.||+.+||++ ++++||||+|++|+||||||||++|||||||+++||++++
T Consensus 629 ~~~~tilt~vq~ksi~~qFk-rt~~~v~~d~k~s~~n---t~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~ 704 (772)
T KOG2203|consen 629 ASFATILTPVQCKSIWRQFK-RTEYTVTQDIKRSEIN---TNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLV 704 (772)
T ss_pred CccceeccHHHHHHHHHHHH-HhhhHHHHHHHHHHhc---CCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHH
Confidence 78899999999999999999 8899999998888888 4556788999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccccchhhhhhhhhHHHHHHHHHHHhcCC
Q 004781 635 IKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQ 679 (731)
Q Consensus 635 ~~~~~vqldi~~~~~~g~l~g~i~~s~k~lp~~~~~~k~l~~~~~ 679 (731)
+|++|+|++|+ +||+|+|||++|++++|+|++||++++++.+||
T Consensus 705 ~~~l~~q~~i~-ef~~~vl~~~~s~~~k~~~tv~n~lrq~ave~~ 748 (772)
T KOG2203|consen 705 SKALWVQGLIP-EFQNGVLPGVLSISGKFRTTVMNLLRQLAVEGQ 748 (772)
T ss_pred HHHHHHhccch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 899999999999999999999999999999999
No 2
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=3e-178 Score=1551.90 Aligned_cols=666 Identities=46% Similarity=0.745 Sum_probs=627.8
Q ss_pred CCccCCC---CCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHhhhhheeeccccccccccccCchhHHHHHHHHHhhc
Q 004781 1 MARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 77 (731)
Q Consensus 1 ~~~~~~~---~~~~lVmDvEGTDgrERGED~q~FErksALFALA~SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~LF 77 (731)
||+|.++ .+++|||||||||||||||| ++||||+||||||+||||||||||||||||||||||||||||||||+||
T Consensus 37 ~~~~~~~~~~~~~~~v~d~eg~d~~er~~~-~~fe~~~alf~la~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf 115 (742)
T PF05879_consen 37 MAKAKEVESSESNILVLDVEGTDGRERGED-QDFERKSALFALAVSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLF 115 (742)
T ss_pred HHhccccccCCCceEEEeCCCCCchhhccc-cchHHHHHHHHHHhhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHH
Confidence 5777776 89999999999999999999 6799999999999999999999999999999999999999999999999
Q ss_pred C-----CCceEEEEEeeCC-CCCChhchhHHHHHHHHHHhhhCCCCCCCCCCCCcceEEEEEeecCCccccHHHHHHHHH
Q 004781 78 S-----PRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVA 151 (731)
Q Consensus 78 ~-----~~Kt~LLFVIRD~-~~tple~L~~~l~~dl~~IW~~v~KP~~~~~~~l~DfFd~~f~~LpHk~lq~e~F~~~v~ 151 (731)
+ ++||+|||||||| +.||+++|+++|++||++||++|+||++|++++|+|||||+|++||||+||||+|.++|+
T Consensus 116 ~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~e~F~~~v~ 195 (742)
T PF05879_consen 116 GKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSISKPEGFENSSLSDFFDLEFTALPHKILQPEKFNEDVA 195 (742)
T ss_pred hhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhccCcccccCCChhheeeeeeeccCchhhhHHHHHHHHH
Confidence 4 4899999999999 669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccC-CCCCC-CCCCCCCCccCCChhhhHHHHHHHhhhcCCCCCchhHHHHHhhchHHHHHHHHHhhhhh-----
Q 004781 152 SLRQRFYHS-VAPGG-LAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAAN----- 224 (731)
Q Consensus 152 ~Lr~rF~~~-~~~~~-l~~~~~~~iP~dG~~~ya~~iWe~I~~NkDLDLPtqq~mlA~~RCdEI~~e~l~~f~~~----- 224 (731)
+||+||.++ ..+++ ++|+||++||+|||++|++|||++|++||||||||||+|||+|||+||++++|++|.++
T Consensus 196 ~Lr~rf~~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~ 275 (742)
T PF05879_consen 196 KLRQRFVDSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELI 275 (742)
T ss_pred HHHHHHhccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence 999999998 34454 58999999999999999999999999999999999999999999999999999999986
Q ss_pred hhHHHHHHHHhcCCcchHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004781 225 EEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFK 304 (731)
Q Consensus 225 ~~~~~l~~~v~~g~v~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~f~~~L~~l~~~~l~~fk 304 (731)
+.|..+++..+.+.+++||+++.+++++||++||++|+||+++||++||++|+++|.+.++++|+.||+|||++++++|+
T Consensus 276 ~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk 355 (742)
T PF05879_consen 276 EKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFK 355 (742)
T ss_pred hhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHhHhHHHHHHHHHHHhhhhhhccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004781 305 DAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDM-SKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLN 383 (731)
Q Consensus 305 ~~l~~~l~~~~~F~~~~~~~~~~~~~~F~~~~~~~~i~~~~w~~-s~~~~~l~~~l~~~~~~~R~~~l~~l~~~~~k~l~ 383 (731)
+.+.+.++++.+|+..++.|.+.|+..|+++|+++.++++.|++ +++++.|.++|++++.++|.++|++|+++++|+++
T Consensus 356 ~~l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~ 435 (742)
T PF05879_consen 356 EALSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWSYSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLK 435 (742)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888889999999999999999999999999999999999 59999999999999999999999999999999999
Q ss_pred hhhchhHHHhhcCCCCChhHHHHHHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHH
Q 004781 384 ESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREES--GRVL 461 (731)
Q Consensus 384 ~~l~~~v~~ll~~~~~d~W~~I~~~f~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~lr~~a~~~l~~~i~e~a--~~ll 461 (731)
++|+++|..+|++|+++||++|++.|.+++++++++|..++.||+++++++++++++||.++|.+|+.+|||+. ++|+
T Consensus 436 ~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~f~~s~~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll 515 (742)
T PF05879_consen 436 SELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKGFGLSEEENEKALKKLRRKAWSVLREKIREEASEDNLL 515 (742)
T ss_pred HHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 9999
Q ss_pred HHHHHHhhhhcccCCCCCCcccCCccchHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhhhhccCCCCCccccCCCC
Q 004781 462 MRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSIT 541 (731)
Q Consensus 462 ~~lkdrFe~~FryD~~g~PR~W~~~ddI~~if~~Ar~~aL~lL~vla~~Rl~d~~~~i~~~l~~~l~d~~~~~~~~~~~~ 541 (731)
++||+||+++||||++|+||+|+++|||++||++||++||+|||+|+++|++++++++|++......+......+..+..
T Consensus 516 ~~LkdRFe~~FryDe~g~PRvW~~eddI~~if~~ARe~AL~LL~vLa~iRL~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 595 (742)
T PF05879_consen 516 IRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIFRKAREHALKLLPVLAIIRLSDGSEIIPDVDISSLEPASSSPGSSESIS 595 (742)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccCcccchhhccccCcCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988765444333222222223445
Q ss_pred CCCCCCCCccCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCcHHHHHHHHHhhhHHHHHHHHh
Q 004781 542 NHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRN 621 (731)
Q Consensus 542 ~~dpl~~~~~~~~~~~~~lLs~~~~~~i~~qFk~e~~~~~~~Al~~qEakRs~~~~~iP~W~~~ll~vLGwNEfmavLrN 621 (731)
+.||+++++|+++++++|||||.||++||+||+++|+++|+|| ++.+.+++++||+|||+||+||||||||+||||
T Consensus 596 ~~d~l~~~~~~~~~~~~~lls~~~~~~i~~~Fk~~~~~~~~eA----krs~~~~~~~iP~w~~~ll~vLGwNE~m~vLrn 671 (742)
T PF05879_consen 596 AIDPLDSSEWEEVDEFATLLSESQCKSIWRQFKREIDYTYVEA----KRSIISSNTQIPPWMYLLLLVLGWNEFMAVLRN 671 (742)
T ss_pred cccccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCHHHHHHHHHHhHHHHHHHHHC
Confidence 6799999999999999999999999999999999999999997 445668889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 004781 622 PLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQIPATN 684 (731)
Q Consensus 622 Pl~l~l~lv~~~~~~~~~vqldi~~~~~~g~l~g~i~~s~k~lp~~~~~~k~l~~~~~~~~~~ 684 (731)
||||+++||+++++|++| |||+.| .+.+++|++|+.+++++.++.....+
T Consensus 672 Pl~~~l~li~~~~~~~~~-~l~l~~------------p~~~v~~~~~~~~~~~~ke~l~~~~~ 721 (742)
T PF05879_consen 672 PLYFTLLLILGGGFYVLY-QLNLWG------------PAIKVVPTAMNEVKRLAKEKLREFLE 721 (742)
T ss_pred hHHHHHHHHHHHHHHHHH-Hhcchh------------HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999 999999 35689999999999999999999876
No 3
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.75 E-value=1.7e-18 Score=178.15 Aligned_cols=146 Identities=43% Similarity=0.665 Sum_probs=126.2
Q ss_pred CCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHh--hhhheeeccccccccccccCchhHHHHHHHHHh----hcCCCc
Q 004781 8 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVMMR----LFSPRK 81 (731)
Q Consensus 8 ~~~~lVmDvEGTDgrERGED~q~FErksALFALA~--SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~----LF~~~K 81 (731)
+..+++||.||.|+.||++ |+.+.++||+|+ ||++|+|+|.+..|.+..+++.+++++++++.. .+.+++
T Consensus 59 ~~~v~~lDteG~~~~~~~~----~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGE----FEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPK 134 (224)
T ss_pred cceEEEEecCCcCccccCc----hhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCC
Confidence 4689999999999999986 899999999999 999999999999999999999999998665544 345689
Q ss_pred eEEEEEeeCC-CCCChhch-----hHHHHHHHHHHhhhCCCCCCCCCCCCcceEEEEEeecCC-------ccccHHHHHH
Q 004781 82 TTLMFVIRDK-TRTPLENL-----EPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSS-------FEEKEELFKE 148 (731)
Q Consensus 82 t~LLFVIRD~-~~tple~L-----~~~l~~dl~~IW~~v~KP~~~~~~~l~DfFd~~f~~LpH-------k~lq~e~F~~ 148 (731)
+.|+|||||| ..++.+.. .....+++++||++|.||.+ +.+.++|+.+..+...| +...+++|.+
T Consensus 135 p~ll~vvRD~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~f~--~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~ 212 (224)
T cd01851 135 PLLLFVVRDFSLDTPLENLDITEGRETLIEDLNKIWSSIRKPFE--NPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLE 212 (224)
T ss_pred CceEEEEecCcCCccccccccccccchhHHHHHHHHHHHHhhcc--CCcchheeccccccchhhcccccchhhCCHHHHH
Confidence 9999999999 56777775 46789999999999999987 55666666666666666 5888999999
Q ss_pred HHHHHHHhccc
Q 004781 149 QVASLRQRFYH 159 (731)
Q Consensus 149 ~v~~Lr~rF~~ 159 (731)
+++.||++|..
T Consensus 213 ~l~~L~~~~~~ 223 (224)
T cd01851 213 ALKELRDRFFS 223 (224)
T ss_pred HHHHHHHHhcC
Confidence 99999999974
No 4
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.68 E-value=0.0045 Score=65.63 Aligned_cols=143 Identities=16% Similarity=0.218 Sum_probs=84.3
Q ss_pred CCCeEEEeccCCCCcccCCCchhhHHHHHHHHHH--hhhhheeeccccccccccccCchhHHHHHHHH------------
Q 004781 8 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVM------------ 73 (731)
Q Consensus 8 ~~~~lVmDvEGTDgrERGED~q~FErksALFALA--~SdVlIINmW~~dIGr~qgaN~~LLKTVFEvn------------ 73 (731)
+..+++||.||..+.+++ +.+.-+-+|||| +|.++|.|. .+.|- ...+.-|.-+.++-
T Consensus 73 ~~~v~llDteG~~~~~~~----~~~~d~~if~Ls~LLSS~~IyN~-~~~i~---~~~l~~L~~~~~l~~~i~~~~~~~~~ 144 (260)
T PF02263_consen 73 KVAVVLLDTEGLGDVEQS----DEKYDAKIFALSMLLSSVLIYNS-MGNID---EDDLDQLELFTELAKHIRVKYGDSAD 144 (260)
T ss_dssp CEEEEEEEEECBTTTTCC----CCHHCHHHHHHHHHH-SEEEEEE-CSSSS---HHHHHCCHHHHHHHHHHHHTHHHHHH
T ss_pred ceeEEEecchhccccccC----cccccHHHHHHHHHHhCceeeCC-CCccc---hhHHHHHHHHHHHHHHHHHhcccccc
Confidence 446999999999887763 334456677766 899999998 33333 33355555555521
Q ss_pred HhhcCCCceEEEEEeeCCCC-CChhchhHHHHHHHHHHhhhCCCCCCCCCC--------CCcceE-EEEEeecCCccccH
Q 004781 74 MRLFSPRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIWDSVPKPQAHMET--------PLSEFF-NVEVVALSSFEEKE 143 (731)
Q Consensus 74 L~LF~~~Kt~LLFVIRD~~~-tple~L~~~l~~dl~~IW~~v~KP~~~~~~--------~l~DfF-d~~f~~LpHk~lq~ 143 (731)
-.-+.+.-..|+||+|||.- ...+.=..+-.+.|++.=... +...++. .|..|| +++.++|||-....
T Consensus 145 ~~~~~~~fp~l~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~--~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~ 222 (260)
T PF02263_consen 145 SEDLGKPFPSLVWLVRDFSLELEDDGGKITPQEYLEQALKPE--SGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDV 222 (260)
T ss_dssp HHCTTTTCEEEEEEEECE-SCTCCTTECHHHHHHHHHHCCSS--TSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCC
T ss_pred hhhhcccchHHHHHHhhccchhhhccCCCCHHHHHHHHHhcc--cchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchh
Confidence 11123355679999999952 222222234455665542211 1111111 245566 67788888765332
Q ss_pred ---------------HHHHHHHHHHHHhcccC
Q 004781 144 ---------------ELFKEQVASLRQRFYHS 160 (731)
Q Consensus 144 ---------------e~F~~~v~~Lr~rF~~~ 160 (731)
++|.+++..|++....+
T Consensus 223 ~~l~~l~~l~~~~L~~eF~~~l~~l~~~i~~~ 254 (260)
T PF02263_consen 223 DKLQNLDGLSLDDLDPEFVEQLDELVKYIFSS 254 (260)
T ss_dssp CC-TCGCCCBGGGS-HHHHHHHHHHHHHHHCC
T ss_pred hhccCcccCChhhCCHHHHHHHHHHHHHHhcc
Confidence 78999999999988863
No 5
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=93.85 E-value=6 Score=48.38 Aligned_cols=96 Identities=9% Similarity=0.187 Sum_probs=54.4
Q ss_pred chHHHHHHHHHhhhhhhhHHHHHHHHhcCCcchHHHHH-HHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHH
Q 004781 209 RCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKL-SSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPA 287 (731)
Q Consensus 209 RCdEI~~e~l~~f~~~~~~~~l~~~v~~g~v~~fg~~~-~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~ 287 (731)
+|.++...+++.|... -.-+.+.|-. .-...| ..|......-|+.+...+++.+..+-...|...+.. ..-
T Consensus 296 ~~~~l~~~~L~~YD~~--AsrY~~~V~~----~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~--~~~ 367 (742)
T PF05879_consen 296 KLKSLRDKALEEYDEE--ASRYHKSVYQ----EKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKS--GED 367 (742)
T ss_pred HHHHHHHHHHHHHHHH--HHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCC
Confidence 6778888888888652 1223322221 112222 222222233356666666666665555555544442 236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 004781 288 FQSMLGHIRSGTLDKFKDAFDKALS 312 (731)
Q Consensus 288 f~~~L~~l~~~~l~~fk~~l~~~l~ 312 (731)
|...++..++.++..|.+.......
T Consensus 368 Fa~~v~~~~~~~~~~F~~~a~~~~i 392 (742)
T PF05879_consen 368 FAEAVRECKQSALEEFEESAEDLVI 392 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7778888888888888887755433
No 6
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=75.79 E-value=1.2e+02 Score=32.81 Aligned_cols=13 Identities=15% Similarity=0.647 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHH
Q 004781 401 TWPAIRKLLRCET 413 (731)
Q Consensus 401 ~W~~I~~~f~~~~ 413 (731)
+|+.+.+.+.+..
T Consensus 252 l~~~l~~~i~~~l 264 (367)
T PF04286_consen 252 LWDSLREWIKEDL 264 (367)
T ss_pred HHHHHHHHHHHhh
Confidence 5666555544433
No 7
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=70.95 E-value=23 Score=36.04 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCCCcHHHHHHHHHhhhHHHHHH------HH----hHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhhh
Q 004781 595 NNWLPPPWAIAAMMVLGFNEFMTL------LR----NPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTK 662 (731)
Q Consensus 595 ~~~~iP~W~~~ll~vLGwNEfmav------Lr----NPl~l~l~lv~~~~~~~~~vqldi~~~~~~g~l~g~i~~s~k 662 (731)
...++|+.+|++|+++++=-++.. +. .+-++.+++++++++.++|+=+|+..+ ..|.++|+..
T Consensus 131 ~~~~lp~~~w~vl~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~l~a~~i~~~l~li~~ld~P-----f~G~i~Vs~~ 203 (209)
T PF14023_consen 131 AQSSLPPPLWIVLLILAALLLIGFLLASALFLGPNRRAHLIAIALFAASIALALFLILDLDNP-----FSGPISVSPA 203 (209)
T ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCCcCHH
Confidence 334688877776665543222222 11 233445555567788888887788876 4567777765
No 8
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=64.18 E-value=2.7e+02 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHHHHhccc
Q 004781 140 EEKEELFKEQVASLRQRFYH 159 (731)
Q Consensus 140 ~lq~e~F~~~v~~Lr~rF~~ 159 (731)
+.+...|-.|+..+..-|.-
T Consensus 773 e~~~~~~~sQa~~~S~~~~r 792 (1283)
T KOG1916|consen 773 EAREPRFCSQASNLSTEMAR 792 (1283)
T ss_pred hhhhhhHHHHhhhhccccCC
Confidence 45678899999998888764
No 9
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=63.23 E-value=6.6 Score=32.02 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=13.8
Q ss_pred CcHHHHHHHHHhhhHHHHHH
Q 004781 599 PPPWAIAAMMVLGFNEFMTL 618 (731)
Q Consensus 599 iP~W~~~ll~vLGwNEfmav 618 (731)
+|+|+|++++-+=+-=||+|
T Consensus 1 ~PwWvY~vi~gI~~S~ym~v 20 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSGYMAV 20 (52)
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 59999988765555555554
No 10
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=60.36 E-value=1e+02 Score=30.55 Aligned_cols=113 Identities=20% Similarity=0.275 Sum_probs=79.7
Q ss_pred HHHHHhhhc-CCCCCchhHHHHHhhchHHHHHHH---HHhhhhhhhHHHHHHHHhcCC--cc--hHHHHHHHHHHHHhhc
Q 004781 185 EIWKVIKEN-KDLDLPAHKVMVATVRCEEIANEK---YSSFAANEEWCELEAAVQSGP--IS--SFGKKLSSILETCLSG 256 (731)
Q Consensus 185 ~iWe~I~~N-kDLDLPtqq~mlA~~RCdEI~~e~---l~~f~~~~~~~~l~~~v~~g~--v~--~fg~~~~~i~~~~L~~ 256 (731)
.-|+.|.++ +.|.--+.+.|.-+-|..+++.++ |.-|. .+.++...+..+. |. .|.. +-.-+|+|+.-
T Consensus 35 ~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~---~Ld~itr~Ln~p~~sV~~~~F~~-~L~~LD~cl~F 110 (157)
T PF04136_consen 35 EQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE---ELDPITRRLNSPGSSVNSDSFKP-MLSRLDECLEF 110 (157)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh---hHHHHHHHHcCCCCcccchHHHH-HHHHHHHHHHH
Confidence 334444332 344444556666677777777755 44443 3556666665543 22 4875 55567999999
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004781 257 YDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLD 301 (731)
Q Consensus 257 YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~f~~~L~~l~~~~l~ 301 (731)
...+-.+=+..+|.-|=+++..+.++.++..+...|+++.+.+++
T Consensus 111 l~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~~~~vl~ 155 (157)
T PF04136_consen 111 LEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSATNQVLK 155 (157)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999988888999999999999999999999999999888777653
No 11
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=51.19 E-value=5.2e+02 Score=31.21 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHhhchhhhhcccc----HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004781 240 SSFGKKLSSILETCLSGYDGEVLYFD----EGVRSAKRKQLEDKLLQLVQPAFQSMLGH 294 (731)
Q Consensus 240 ~~fg~~~~~i~~~~L~~YD~~AsrY~----~~V~~~Kr~eL~~~i~~~l~~~f~~~L~~ 294 (731)
++|.+..+.-.++|+.+||+..--.. .--..+-|..|...|......+=..-|+.
T Consensus 397 ~gF~es~~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke 455 (772)
T KOG2203|consen 397 EGFSESVADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKE 455 (772)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998743221 00123445666666665554444444433
No 12
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=49.57 E-value=6.7e+02 Score=32.01 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHhhhchhHHHhhcCCCCChhHHHHHHHHHHHHHHHhhhhhhhcCCC----CCHHHHHHHHHHHHHHHH
Q 004781 378 FEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFD----MDEETKEKMLASLENYAK 446 (731)
Q Consensus 378 ~~k~l~~~l~~~v~~ll~~~~~d~W~~I~~~f~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~~lr~~a~ 446 (731)
+...+...+.-.|...|++..+.|.+.|-..|..-+.+....+...+.+-. .+.++.+.-+..|..-+-
T Consensus 1044 lQ~a~resm~SsviPafEKScqaMF~Qi~daF~~Gi~e~~~q~~s~~~s~~qr~a~nrE~~~~ql~~L~~t~~ 1116 (1283)
T KOG1916|consen 1044 LQEALRESMESSVIPAFEKSCQAMFQQIDDAFQKGIQEHTQQLISSASSVPQRQALNRELAEAQLNGLALTAA 1116 (1283)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 555566666777778889999999999999999999998888877775543 334444444444443333
No 13
>PRK13603 fumarate reductase subunit C; Provisional
Probab=42.27 E-value=39 Score=32.54 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhHHHHHHHHH---HHHHHHHHH
Q 004781 611 GFNEFMTLLRNPLYLGFIFI---GYLLIKALW 639 (731)
Q Consensus 611 GwNEfmavLrNPl~l~l~lv---~~~~~~~~~ 639 (731)
+||.|+.-|.||+.+++=++ +.++.-.-|
T Consensus 52 aw~~f~~flqnPivv~lniiaL~a~L~Ha~Tw 83 (126)
T PRK13603 52 SYQRFLDFSANPVVVVLNVVALSFLLLHAVTW 83 (126)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999966554 334444444
No 14
>PRK04987 fumarate reductase subunit C; Provisional
Probab=38.92 E-value=64 Score=31.30 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=21.7
Q ss_pred hhHHHHHHHHhHHHHHHHHH---HHHHHHHHHH
Q 004781 611 GFNEFMTLLRNPLYLGFIFI---GYLLIKALWV 640 (731)
Q Consensus 611 GwNEfmavLrNPl~l~l~lv---~~~~~~~~~v 640 (731)
+||.|...|.||+.+++=++ +.++.-.-|.
T Consensus 56 aw~~f~~flqnPiv~~lniiaL~a~LlHa~TwF 88 (130)
T PRK04987 56 AWAGFVSFLQNPIVVILNIITLAAALLHTKTWF 88 (130)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999966554 3444444453
No 15
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=36.24 E-value=55 Score=31.50 Aligned_cols=29 Identities=28% Similarity=0.591 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhHHHHHHHHH---HHHHHHHHH
Q 004781 611 GFNEFMTLLRNPLYLGFIFI---GYLLIKALW 639 (731)
Q Consensus 611 GwNEfmavLrNPl~l~l~lv---~~~~~~~~~ 639 (731)
+||.|+.-|.||+.+++=++ +.++.-.-|
T Consensus 52 aw~~f~~flqnPiv~~lniiaL~a~L~Ha~Tw 83 (124)
T cd00546 52 SWAGFVSFLQNPIVVLLNIIALAAALLHAKTW 83 (124)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999976554 334444444
No 16
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=32.65 E-value=53 Score=29.12 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHH
Q 004781 602 WAIAAMMVLGFNEFMTLLRNPLYLG 626 (731)
Q Consensus 602 W~~~ll~vLGwNEfmavLrNPl~l~ 626 (731)
|.|++++.++ +|.+||||+...
T Consensus 51 p~~gl~~L~a---g~S~lRwPv~yl 72 (77)
T PF10658_consen 51 PWWGLLVLAA---GMSMLRWPVIYL 72 (77)
T ss_pred hHHHHHHHHH---HHHHHHhHHHHH
Confidence 3444555555 789999998654
No 17
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.63 E-value=9e+02 Score=28.63 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHhhhhcccCC-CCCCcccCCccchHHHHHHHHH
Q 004781 457 SGRVLMRMKDRFTSLFSHDS-DSMPRVWTGKEDIRGITKLARS 498 (731)
Q Consensus 457 a~~ll~~lkdrFe~~FryD~-~g~PR~W~~~ddI~~if~~Ar~ 498 (731)
.+-++.++..++-..|.... .|.+ =-..+|++++...|+.
T Consensus 492 ~~g~~~~~~s~~~S~l~~~~~~~~~--~~~~~d~~~ilarae~ 532 (582)
T PF09731_consen 492 GAGLLGHLLSYLFSLLLFRPKGGEV--DPEGDDVESILARAEY 532 (582)
T ss_pred CCCHHHHHHHHHHheeeeecCCCCC--CCCCCCHHHHHHHHHH
Confidence 56688899999999999984 4444 1135688888888876
No 18
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=32.28 E-value=46 Score=25.84 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=8.2
Q ss_pred CCCCcHHHHHHHH
Q 004781 596 NWLPPPWAIAAMM 608 (731)
Q Consensus 596 ~~~iP~W~~~ll~ 608 (731)
+..||+|+++.+.
T Consensus 5 tGRIPLWlVgtv~ 17 (40)
T PF01788_consen 5 TGRIPLWLVGTVA 17 (40)
T ss_dssp TTSS-HHHHHHHH
T ss_pred CCcccchHHHHHH
Confidence 4569999876544
No 19
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=30.72 E-value=7e+02 Score=26.76 Aligned_cols=186 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred HhHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHH--------------------------------HH
Q 004781 321 AHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASV--------------------------------RA 368 (731)
Q Consensus 321 ~~~~~~~~~~~F~~~~~~~~i~~~~w~~s~~~~~l~~~l~~~~~~~--------------------------------R~ 368 (731)
+....+.-...|...-.-.. ....+.+...+..|.+.|..|+.+. +.
T Consensus 33 ~~~a~~~E~~fF~~~~~~~~-~~~~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~ 111 (295)
T PF01031_consen 33 IEEARQKEKEFFSNHPWYSS-PADRCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQR 111 (295)
T ss_dssp HHHHHHHHHHHHHHSTTTGG-GGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCC-cccccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHhhcCCCCChhHHHHHHHHHHHHHHHhhhh--------------hhhcCCCCCHHHH
Q 004781 369 AKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFS--------------DALYGFDMDEETK 434 (731)
Q Consensus 369 ~~l~~l~~~~~k~l~~~l~~~v~~ll~~~~~d~W~~I~~~f~~~~~~~~~~~~--------------~~~~~~~~~~~e~ 434 (731)
..|-.+++.+.+.+...+.+.-...+...+-..|.+|+..|+........++. ....|-++.-.-.
T Consensus 112 ~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p 191 (295)
T PF01031_consen 112 AYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVP 191 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHhhcccccccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcccCCCCCCcccCC-ccchHHHHHHHHHHHHHHHHHH
Q 004781 435 EKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTG-KEDIRGITKLARSASLKLLSVM 507 (731)
Q Consensus 435 ~~~~~~lr~~a~~~l~~~i~e~a~~ll~~lkdrFe~~FryD~~g~PR~W~~-~ddI~~if~~Ar~~aL~lL~vl 507 (731)
..++..|=++.-.-++.-+.+--+.|...|.+-+.......-..-|++... .+-+..+..+.+..|.+.+.-+
T Consensus 192 ~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~l 265 (295)
T PF01031_consen 192 ESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENL 265 (295)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 20
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=27.23 E-value=99 Score=30.02 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=21.5
Q ss_pred hHHHHHHHHhHHHHHHHHH---HHHHHHHHHHH
Q 004781 612 FNEFMTLLRNPLYLGFIFI---GYLLIKALWVQ 641 (731)
Q Consensus 612 wNEfmavLrNPl~l~l~lv---~~~~~~~~~vq 641 (731)
||.|+..|.||+.+++=++ +.++.-.-|.+
T Consensus 56 w~~~~~fl~nP~vv~lnliaLaa~L~Ha~TwF~ 88 (129)
T PF02300_consen 56 WQGWLAFLQNPIVVILNLIALAAALLHAKTWFE 88 (129)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999966554 34444445543
No 21
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=23.60 E-value=44 Score=42.62 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccc
Q 004781 597 WLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISG 646 (731)
Q Consensus 597 ~~iP~W~~~ll~vLGwNEfmavLrNPl~l~l~lv~~~~~~~~~vqldi~~ 646 (731)
+.||+|+|++=++.| +|+++++.+.|| |+.-+.
T Consensus 974 ~~vp~wiIi~svl~G----------------LLlL~llv~~Lw-K~GFFK 1006 (1030)
T KOG3637|consen 974 RPVPLWIIILSVLGG----------------LLLLALLVLLLW-KCGFFK 1006 (1030)
T ss_pred CccceeeehHHHHHH----------------HHHHHHHHHHHH-hcCccc
Confidence 459999999988888 445555677788 776665
No 22
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=23.15 E-value=42 Score=30.07 Aligned_cols=19 Identities=37% Similarity=0.794 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 004781 617 TLLRNPLYLGFIFIGYLLI 635 (731)
Q Consensus 617 avLrNPl~l~l~lv~~~~~ 635 (731)
++.|||+|+..+++....+
T Consensus 49 ~~vRhPmY~g~~l~~~G~~ 67 (106)
T PF04191_consen 49 RYVRHPMYLGFLLILLGIA 67 (106)
T ss_pred cCcCChHHHHHHHHHHHHH
No 23
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=23.02 E-value=7.7e+02 Score=24.64 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhc--CCCChhHHHhHhHHHHHHHHHHH---hhhhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 004781 297 SGTLDKFKDAFDKALS--GGEGFSSAAHHCSKFYMNLFDEA---CADAVIEQANWDMSKARDKFQRDIDAHIASVRA 368 (731)
Q Consensus 297 ~~~l~~fk~~l~~~l~--~~~~F~~~~~~~~~~~~~~F~~~---~~~~~i~~~~w~~s~~~~~l~~~l~~~~~~~R~ 368 (731)
..+...|...+.++++ .+.+|...+....+......... ..+. +...+=..++.+..+...|.+.++.+|.
T Consensus 6 ~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~ee-ik~~n~~~~e~l~~~~~kl~et~~~L~k 81 (155)
T PF07464_consen 6 QEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEE-IKDANPEAEEALKQLKTKLEETAEKLRK 81 (155)
T ss_dssp HHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHH-HTT-SSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555553 24566666665555544443322 2221 2222334567777888888888877775
No 24
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=22.05 E-value=3.5e+02 Score=26.36 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=25.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCcHHHHHHHHHh
Q 004781 559 TLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVL 610 (731)
Q Consensus 559 ~lLs~~~~~~i~~qFk~e~~~~~~~Al~~qEakRs~~~~~iP~W~~~ll~vL 610 (731)
.=+|+.+++.+.++|+....-.+ +...++..++++++|+
T Consensus 29 ~~~~~i~~~~~~~k~k~~~k~s~-------------~ke~~~L~v~~vv~V~ 67 (130)
T PF08627_consen 29 QNESNIKQKSISEKIKDFLKQSY-------------SKENFKLLVYVVVYVV 67 (130)
T ss_pred cccccchHHHHHHHHHHHHHHhh-------------hhcchHHHHHHHHHHH
Confidence 34678888889999988744333 2234788887765543
No 25
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=21.59 E-value=1.8e+02 Score=28.16 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004781 602 WAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWV 640 (731)
Q Consensus 602 W~~~ll~vLGwNEfmavLrNPl~l~l~lv~~~~~~~~~v 640 (731)
|+.++++++. ..++.||++++.++++++....++.
T Consensus 44 Y~~i~~~~~~----~~ll~~P~~l~~~~~~~~~~~~~~~ 78 (153)
T PF03208_consen 44 YLLIFLLLFL----IFLLTNPFFLLVLLLVVALWAFIYK 78 (153)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555554 4688899988877776555544443
Done!