Query 004781
Match_columns 731
No_of_seqs 147 out of 193
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q5d_A Atlastin-1; G protein, 99.9 4.9E-24 1.7E-28 237.4 21.4 263 8-287 139-432 (447)
2 1f5n_A Interferon-induced guan 99.6 1.3E-13 4.3E-18 158.6 27.5 283 7-312 89-423 (592)
3 4ido_A Atlastin-1; GTPase, GTP 99.1 1.9E-09 6.6E-14 120.1 19.2 258 7-285 138-430 (457)
4 2l8s_A Integrin alpha-1; trans 58.4 10 0.00034 30.2 3.9 15 597-611 5-19 (54)
5 2knc_A Integrin alpha-IIB; tra 53.7 15 0.00051 29.2 4.2 14 598-611 9-22 (54)
6 2k1a_A Integrin alpha-IIB; sin 51.5 22 0.00076 26.8 4.7 15 597-611 6-20 (42)
7 1kf6_C Fumarate reductase 15 k 42.0 36 0.0012 31.6 5.5 31 611-641 55-88 (130)
8 3arc_J Photosystem II reaction 40.3 34 0.0012 25.5 4.0 14 595-608 4-17 (40)
9 2a01_A Apolipoprotein A-I; fou 20.6 5.7E+02 0.02 25.4 10.7 133 244-385 80-243 (243)
10 3s0x_A Peptidase A24B, FLAK do 18.2 3.4E+02 0.012 27.4 8.3 48 596-644 28-82 (237)
No 1
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=99.92 E-value=4.9e-24 Score=237.44 Aligned_cols=263 Identities=15% Similarity=0.122 Sum_probs=204.6
Q ss_pred CCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHh--hhhheeeccccccccccccCchhHHHHHHHHHhh----cCCCc
Q 004781 8 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL----FSPRK 81 (731)
Q Consensus 8 ~~~~lVmDvEGTDgrERGED~q~FErksALFALA~--SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~L----F~~~K 81 (731)
+..+++||.||+++.+| ++++.++|||||+ |+++|+|+ .|.++++++..|++|+|++... |.+..
T Consensus 139 ~~~vvllDTeG~~~~~~-----~~~~d~~ifal~~lLSs~~IyN~----~~~i~~~~l~~L~~~~e~~~~~~~~~~~~~f 209 (447)
T 3q5d_A 139 KVAVLLMDTQGTFDSQS-----TLRDSATVFALSTMISSIQVYNL----SQNVQEDDLQHLQLFTEYGRLAMEETFLKPF 209 (447)
T ss_dssp EEEEEEEEEECCCSSHH-----HHHHHHHHHHHHHHHCSEEEEEE----SSSCCHHHHHHHHHHHHHHHHTSCCCSSCSE
T ss_pred cceEEEEcCCccccccc-----chhhhHHHHHHHHHHhhHHHHhh----cccccHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 34699999999999987 7999999999998 99999999 5899999999999999998742 22357
Q ss_pred eEEEEEeeCCCCC-ChhchhHHHHHHHHHHhhhCC-CCCCCCC--CCCcceE-EEEEeecCCcccc--------------
Q 004781 82 TTLMFVIRDKTRT-PLENLEPVLREDIQKIWDSVP-KPQAHME--TPLSEFF-NVEVVALSSFEEK-------------- 142 (731)
Q Consensus 82 t~LLFVIRD~~~t-ple~L~~~l~~dl~~IW~~v~-KP~~~~~--~~l~DfF-d~~f~~LpHk~lq-------------- 142 (731)
..|+||||||+.. ..+.=..+-.+.|++++.... ++++... ..|.+|| ++++++|||..++
T Consensus 210 p~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~~~~~~~~~~~r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L 289 (447)
T 3q5d_A 210 QSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEI 289 (447)
T ss_dssp EEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSSTTCSSSSCCHHHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGS
T ss_pred CceEEEEeeccccccccCCCCCHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCceEEeccCcccchhhhhhhhcchhhc
Confidence 7999999999531 111111233555666665442 2333322 4689999 7999999999743
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCC--CCCCCccCCChhhhHHHHHHHhhhcCCCCCchhHHHHHhhchHHHHHHHHHh
Q 004781 143 EELFKEQVASLRQRFYHSVAPGGLAG--DRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSS 220 (731)
Q Consensus 143 ~e~F~~~v~~Lr~rF~~~~~~~~l~~--~~~~~iP~dG~~~ya~~iWe~I~~NkDLDLPtqq~mlA~~RCdEI~~e~l~~ 220 (731)
.++|.+++..|+..+..+. .+.+ .....|++.+|..|++++|++|.+|+..++|++.+++|+++|+++..++++.
T Consensus 290 ~~~F~~~l~~l~~~i~~~~---~~~~K~~~G~~vtg~~L~~~~~~yv~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~ 366 (447)
T 3q5d_A 290 DDEFIKNLKILIPWLLSPE---SLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDT 366 (447)
T ss_dssp CHHHHHHHHHHHHHHHSTT---TCCCCEETTEECBHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCcc---cccccccCCEeecHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2789999999999998532 2322 2223455555999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhc-CC---cchHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHH
Q 004781 221 FAANEEWCELEAAVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPA 287 (731)
Q Consensus 221 f~~~~~~~~l~~~v~~-g~---v~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~ 287 (731)
|.. .+++.+.. .+ .++|........++|++.|++.+.++.+.++++++++|+.+|...+...
T Consensus 367 Y~~-----~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~~~~ 432 (447)
T 3q5d_A 367 YNK-----KMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432 (447)
T ss_dssp HHH-----HHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 975 23333321 22 2469999999999999999999966689999999999999988775544
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.60 E-value=1.3e-13 Score=158.57 Aligned_cols=283 Identities=14% Similarity=0.153 Sum_probs=206.9
Q ss_pred CCCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHh--hhhheeeccccccccccccCchhHHHHHHHHHhhcCC-----
Q 004781 7 IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP----- 79 (731)
Q Consensus 7 ~~~~~lVmDvEGTDgrERGED~q~FErksALFALA~--SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~LF~~----- 79 (731)
.+..++++|.+|.++.++|++. ..+.+||+|+ |+++|+|. .|..+..++.+|..|.+..-.+..+
T Consensus 89 ~~~~i~LiDTpGi~~~~~~~~~----~~~~~fala~llss~lv~n~----~~~i~~~dl~~l~~v~e~~~~l~~k~~~~~ 160 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDVEKGDNQ----NDSWIFALAVLLSSTFVYNS----IGTINQQAMDQLYYVTELTHRIRSKSSPDE 160 (592)
T ss_dssp TTCEEEEEEECCBCCGGGCCCT----THHHHHHHHHHHCSEEEEEE----ESCSSHHHHHTTHHHHTHHHHCBSCCC---
T ss_pred CCceEEEecCCCcCcccccchh----HHHHHHHHHHHhcCeEEEEC----CCCccHHHHHHHHHHHHHhhhhhcccCccc
Confidence 3457999999999999998763 4567887777 99999996 7788889999999999998766643
Q ss_pred -------------CceEEEEEeeCCCCC-ChhchhHHHHHHHHHHhhhCCCCCCCC--------CCCCcceE-EEEEeec
Q 004781 80 -------------RKTTLMFVIRDKTRT-PLENLEPVLREDIQKIWDSVPKPQAHM--------ETPLSEFF-NVEVVAL 136 (731)
Q Consensus 80 -------------~Kt~LLFVIRD~~~t-ple~L~~~l~~dl~~IW~~v~KP~~~~--------~~~l~DfF-d~~f~~L 136 (731)
....|+||+|||+.. ..+.-.-+-.+.|++.|.... ...+ ...|..|| +++.++|
T Consensus 161 ~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~~~g~~~t~~eyLe~~L~~~~--~~~~~~~~~n~~R~~I~~~F~~~~cf~l 238 (592)
T 1f5n_A 161 NENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKK--GTSQKDETFNLPRLCIRKFFPKKKCFVF 238 (592)
T ss_dssp ----CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred ccccccchhhhhccCCceEEEEecccchhccCCCCCCHHHHHHHHHhhcc--CCChhhHhhhhHHHHHHHhCCCCcEEEe
Confidence 135799999999532 111111123567777777662 2111 12477889 5999999
Q ss_pred CCcccc--------------HHHHHHHHHHHHHhcccCCCCCCCCCCCCCCccCCC--hhhhHHHHHHHhhhcCCCCCch
Q 004781 137 SSFEEK--------------EELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASG--FSFSAHEIWKVIKENKDLDLPA 200 (731)
Q Consensus 137 pHk~lq--------------~e~F~~~v~~Lr~rF~~~~~~~~l~~~~~~~iP~dG--~~~ya~~iWe~I~~NkDLDLPt 200 (731)
||.... ..+|.+++..|+..+..+..|.. +.+++|+.| |..|+...|+.|.++.-..+++
T Consensus 239 p~P~~~~~l~~L~~~~~~~L~peF~~~l~~l~~~i~~~~~~K~----~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s 314 (592)
T 1f5n_A 239 DRPVHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKT----LSGGIQVNGPRLESLVLTYVNAISSGDLPCMEN 314 (592)
T ss_dssp CCCSCGGGGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCE----ETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHH
T ss_pred CCCCcHHHHhhhccCChhhCCHHHHHHHHHHHHHHHcccccee----ecCCccccHHHHHHHHHHHHHHHhCCCCCCcch
Confidence 987543 37899999999999987654432 334567777 9999999999999999989999
Q ss_pred hHHHHHhhchHHHHHHHHHhhhhhhhHHHHHHHHhcCCc---chHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHH
Q 004781 201 HKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPI---SSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLE 277 (731)
Q Consensus 201 qq~mlA~~RCdEI~~e~l~~f~~~~~~~~l~~~v~~g~v---~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~ 277 (731)
.-.++|+..|..+..+++..|.. .+.+.+ .-|. ..|-..-.....+|++.|...+.. .+..+.+++|.
T Consensus 315 ~~~a~a~~e~~~av~~A~~~Y~~-----~M~~~~-~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~---d~~~~~~~~L~ 385 (592)
T 1f5n_A 315 AVLALAQIENSAAVQKAIAHYEQ-----QMGQKV-QLPTESLQELLDLHRDSEREAIEVFIRSSFK---DVDHLFQKELA 385 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHC-CSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC---CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHHH
Confidence 99999999999999999999975 233333 2232 347777788899999999987632 33456677788
Q ss_pred HHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 004781 278 DKLLQLVQPAFQ---SMLGHIRSGTLDKFKDAFDKALS 312 (731)
Q Consensus 278 ~~i~~~l~~~f~---~~L~~l~~~~l~~fk~~l~~~l~ 312 (731)
..|...+..+.. ..-...++.+++.+...+...++
T Consensus 386 ~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~ 423 (592)
T 1f5n_A 386 AQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVK 423 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877776655543 22334677777777777766555
No 3
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=99.10 E-value=1.9e-09 Score=120.11 Aligned_cols=258 Identities=17% Similarity=0.159 Sum_probs=177.9
Q ss_pred CCCCeEEEeccCCCCcccCCCchhhHHHHHHHHHH--hhhhheeeccccccccccccCchhHHHHHHHHHhh-----cCC
Q 004781 7 IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-----FSP 79 (731)
Q Consensus 7 ~~~~~lVmDvEGTDgrERGED~q~FErksALFALA--~SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~L-----F~~ 79 (731)
.+..+++||.||.++.|++ ++..+.+|||| +|+++|+|+ .|.-+...+--|.-|-|.- ++ |.+
T Consensus 138 ~~~~vlllDTEG~~d~~~~-----~~~d~~ifaLa~LLSS~~IyN~----~~~i~~~~L~~L~~~tel~-~~i~~~~~~~ 207 (457)
T 4ido_A 138 KKVAVLLMDTQGTFDSQST-----LRDSATVFALSTMISSIQVYNL----SQNVQEDDLQHLQLFTEYG-RLAMEETFLK 207 (457)
T ss_dssp CEEEEEEEEECCBTCTTCC-----HHHHHHHHHHHHHHCSEEEEEE----ESSCCHHHHHHHHHHHHHH-HHHSCCCSSC
T ss_pred CeeEEEEEeccCCCCcccC-----ccccHHHHHHHHHHhhheeecc----cccCCHHHHHHHHHHHHHH-HHHhhhcccc
Confidence 3446999999999999883 58899999999 599999998 4444555566777666643 22 233
Q ss_pred CceEEEEEeeCCCCCChh--chhHHHHHHHHHHhhhCCCCCCCC-----CCCCcceE-EEEEeecCCcccc---------
Q 004781 80 RKTTLMFVIRDKTRTPLE--NLEPVLREDIQKIWDSVPKPQAHM-----ETPLSEFF-NVEVVALSSFEEK--------- 142 (731)
Q Consensus 80 ~Kt~LLFVIRD~~~tple--~L~~~l~~dl~~IW~~v~KP~~~~-----~~~l~DfF-d~~f~~LpHk~lq--------- 142 (731)
.=..|++++|||.- |++ .=..+-.+.|++.=.. +|...+ ...|..|| +.+.+.|||-..+
T Consensus 208 ~Fp~f~wlvRDf~l-~l~~~~g~~t~~eyLe~~L~~--~~g~~~~~~~iR~~I~~~F~~~~Cf~lp~P~~~~~~~~~~~~ 284 (457)
T 4ido_A 208 PFQSLIFLVRDWSF-PYEFSYGADGGAKFLEKRLKV--SGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDG 284 (457)
T ss_dssp SEEEEEEEEETCCC-TTTSCSBHHHHHHHHHHHHCC--CTTSCHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHCTTCCC
T ss_pred cCCceEEEEecCCc-cccccCCCCCHHHHHHHHhcc--CCCCCHHHHHHHHHHHHhCCCCcEEEcCCCchhhhhchhhhc
Confidence 45689999999952 111 0001112333321111 121111 11355666 6788888887321
Q ss_pred -----HHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcc--CCChhhhHHHHHHHhhhcCCCCCchhHHHHHhhchHHHHH
Q 004781 143 -----EELFKEQVASLRQRFYHSVAPGGLAGDRRGVVP--ASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIAN 215 (731)
Q Consensus 143 -----~e~F~~~v~~Lr~rF~~~~~~~~l~~~~~~~iP--~dG~~~ya~~iWe~I~~NkDLDLPtqq~mlA~~RCdEI~~ 215 (731)
.++|.+++..|+..+..+.. +.+..-.++| +-.|..|+....+.|.++.--.+++-=..+|+..|..+..
T Consensus 285 ~l~dL~peF~~ql~~l~~~I~~~~~---l~~K~i~G~~vtg~~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~en~~Av~ 361 (457)
T 4ido_A 285 KLKEIDDEFIKNLKILIPWLLSPES---LDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVA 361 (457)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSTTT---CCCCEETTEECBHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHhcccc---ccccccCCEeecHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36799999999999985432 2111123344 4468899999999999888777788889999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHhc-CC---cchHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhH
Q 004781 216 EKYSSFAANEEWCELEAAVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQ 285 (731)
Q Consensus 216 e~l~~f~~~~~~~~l~~~v~~-g~---v~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~ 285 (731)
++++.|.. .+.+.+.. -| ..+|-..-..+..+|++.|+..+....+.++++.+++|+..|.....
T Consensus 362 ~A~~~Y~~-----~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~~~~~~L~~~l~~~~~ 430 (457)
T 4ido_A 362 TAKDTYNK-----KMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYI 430 (457)
T ss_dssp HHHHHHHH-----HHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 34443331 12 23589999999999999999877667788998999999888776643
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=58.42 E-value=10 Score=30.21 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHhh
Q 004781 597 WLPPPWAIAAMMVLG 611 (731)
Q Consensus 597 ~~iP~W~~~ll~vLG 611 (731)
..+|.|+|++-++.|
T Consensus 5 ~~vp~WiIi~svl~G 19 (54)
T 2l8s_A 5 GRVPLWVILLSAFAG 19 (54)
T ss_dssp CCCCTHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHH
Confidence 358999999888887
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.68 E-value=15 Score=29.24 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=12.3
Q ss_pred CCcHHHHHHHHHhh
Q 004781 598 LPPPWAIAAMMVLG 611 (731)
Q Consensus 598 ~iP~W~~~ll~vLG 611 (731)
.+|.|+|++-++.|
T Consensus 9 ~vp~wiIi~svl~G 22 (54)
T 2knc_A 9 AIPIWWVLVGVLGG 22 (54)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHH
Confidence 58999999888888
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=51.49 E-value=22 Score=26.80 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHhh
Q 004781 597 WLPPPWAIAAMMVLG 611 (731)
Q Consensus 597 ~~iP~W~~~ll~vLG 611 (731)
..+|.|+|++-++.|
T Consensus 6 ~~vp~wiIi~s~l~G 20 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGG 20 (42)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHH
Confidence 358999999888888
No 7
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=41.95 E-value=36 Score=31.63 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhHHHHHHHHH---HHHHHHHHHHH
Q 004781 611 GFNEFMTLLRNPLYLGFIFI---GYLLIKALWVQ 641 (731)
Q Consensus 611 GwNEfmavLrNPl~l~l~lv---~~~~~~~~~vq 641 (731)
+||.|+..|.||+.+++=++ +.++.-.-|.+
T Consensus 55 aw~~fv~fl~nPivvilniiaLaa~L~Ha~TwF~ 88 (130)
T 1kf6_C 55 AWAGFVDFLQNPVIVIINLITLAAALLHTKTWFE 88 (130)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999966554 44555555543
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=40.33 E-value=34 Score=25.45 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=10.0
Q ss_pred CCCCCcHHHHHHHH
Q 004781 595 NNWLPPPWAIAAMM 608 (731)
Q Consensus 595 ~~~~iP~W~~~ll~ 608 (731)
++..||+|+++.+.
T Consensus 4 ~tGRiPLWlvgtv~ 17 (40)
T 3arc_J 4 EGGRIPLWIVATVA 17 (40)
T ss_dssp CTTSSCHHHHHHHH
T ss_pred CcCcccEEeeeeeh
Confidence 34579999977654
No 9
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=20.62 E-value=5.7e+02 Score=25.44 Aligned_cols=133 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---------------------HHH
Q 004781 244 KKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGT---------------------LDK 302 (731)
Q Consensus 244 ~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~f~~~L~~l~~~~---------------------l~~ 302 (731)
..++.-+.+-+++|-....-|...++..-.+.+++ +-..|.|+...+-+.++.++ +..
T Consensus 80 ~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~ee-lr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~vee 158 (243)
T 2a01_A 80 EGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMEL-YRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDA 158 (243)
T ss_dssp HHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcCCCChhHHHhHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHH----------HHHH
Q 004781 303 FKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRA----------AKLG 372 (731)
Q Consensus 303 fk~~l~~~l~~~~~F~~~~~~~~~~~~~~F~~~~~~~~i~~~~w~~s~~~~~l~~~l~~~~~~~R~----------~~l~ 372 (731)
+++.| .+++..++.....-+..+.+......-. ..=......+.|+..+...+..+|. .++.
T Consensus 159 lk~~l-------~P~~ee~r~kl~~~~~el~~~l~p~~~e-~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~ 230 (243)
T 2a01_A 159 LRTHL-------APYSDELRQRLAARLEALKENGGARLAE-YHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFL 230 (243)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTTS-SSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHH
T ss_pred HHHHH-------HhhHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhh
Q 004781 373 ELTAIFEAKLNES 385 (731)
Q Consensus 373 ~l~~~~~k~l~~~ 385 (731)
.++..+.+++...
T Consensus 231 ~~~e~~~~~~~~~ 243 (243)
T 2a01_A 231 SALEEYTKKLNTQ 243 (243)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCC
No 10
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=18.22 E-value=3.4e+02 Score=27.45 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHHHhhhHH--HHHHHHh-HHHH----HHHHHHHHHHHHHHHHhcc
Q 004781 596 NWLPPPWAIAAMMVLGFNE--FMTLLRN-PLYL----GFIFIGYLLIKALWVQLDI 644 (731)
Q Consensus 596 ~~~iP~W~~~ll~vLGwNE--fmavLrN-Pl~l----~l~lv~~~~~~~~~vqldi 644 (731)
++.||-|.|..++++|.== +.....+ ..++ ..+++++++++.+| .++.
T Consensus 28 ~R~IpN~l~~~ll~~gi~l~~~~~~~~~~~~~l~~~~~~~~i~f~l~~~lf-~lG~ 82 (237)
T 3s0x_A 28 SREIEDYIWIFLAVFGVLFAIYSSITLLDYSILINSISGFVICFILGYMMF-LSGI 82 (237)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred hcEeCchhHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHH-HhcC
Confidence 3469999999988776310 0001111 1121 22235677888888 6666
Done!