BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004782
(731 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YU5|EXOC4_ARATH Probable exocyst complex component 4 OS=Arabidopsis thaliana
GN=SEC8 PE=1 SV=1
Length = 1053
Score = 1096 bits (2835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/749 (75%), Positives = 637/749 (85%), Gaps = 23/749 (3%)
Query: 1 MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDI 60
M IF+GLP+ +K YLREELARI+ SW A RFDSLPHVVHILTSKDRE ++ ILK+Q+D+
Sbjct: 1 MGIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDV 60
Query: 61 IEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120
+EEVVDEVVHAYH GFNKAIQNYSQILRLFSES E I +LK DLAEAK+ LG RNKQLHQ
Sbjct: 61 VEEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQ 120
Query: 121 LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVG 180
LWYRSVTLRHIISLLDQIEGIAKVP+RIEKLIA KQ+YAA+Q++ QS+LMLEREGLQTVG
Sbjct: 121 LWYRSVTLRHIISLLDQIEGIAKVPSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVG 180
Query: 181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNN 240
ALQDVRSELTKLRG LF+K+L+DLHAHLYNRGEYSS S++E DDEVPTT AVA + +
Sbjct: 181 ALQDVRSELTKLRGALFFKILDDLHAHLYNRGEYSSVASSIYERDDEVPTTTAVAASRMS 240
Query: 241 SQPLSRRTR-LKGDNQFGVHGLADGSH-------SSTFDGHDEDGSLEAHDETSLDGLSI 292
SQPLSRRTR LKGD+QFGV GL +GS+ SS+FDGHDE+ S+E HDE++ D
Sbjct: 241 SQPLSRRTRTLKGDSQFGVRGLTNGSYRTASNDESSSFDGHDEEDSVE-HDESTADTARN 299
Query: 293 G------------WLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIIC 340
G WL++STPDEF+EA+RKSD PLHVKYLQT+V+CLC+LGKVAAAGAIIC
Sbjct: 300 GTDSKLLSHQLPPWLSDSTPDEFIEAVRKSDDPLHVKYLQTLVQCLCMLGKVAAAGAIIC 359
Query: 341 QRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNG 400
Q+LRPTIHEII SKIKAH + N S+SA Q ++ GLH +KGQ +Y+L K+K QNG
Sbjct: 360 QKLRPTIHEIIISKIKAHLETTNLSKSACSQGDRSVAAGLHLIKGQSEAYRLSKEKPQNG 419
Query: 401 ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHD 460
IS SGT LAVSPVS LMAP GKAQAAAKELLDSILD++V+IFENHVV+GELLE ++S+HD
Sbjct: 420 ISNSGTHLAVSPVSPLMAPGGKAQAAAKELLDSILDTIVKIFENHVVIGELLEMKASQHD 479
Query: 461 INTPKSMIADANWNPDSEAS-VTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAV 519
INTP+S+ D NWN +SEAS TGGY+I F +TVLQSECQQLICEILRATPEAASADAA
Sbjct: 480 INTPRSLPTDVNWNTESEASQATGGYTISFPLTVLQSECQQLICEILRATPEAASADAAA 539
Query: 520 QTARLASKAPSKEKRDGSEDGLTFAFRFTDATISIPNQGADLIRQGWSRRGTNVLQEGYG 579
QTA+LA KAP K+KRD EDGLTF FRFTDAT+SI NQGADLIRQGW +R N EGYG
Sbjct: 540 QTAKLAKKAPKKDKRDAPEDGLTFTFRFTDATVSISNQGADLIRQGWGKRAPNASLEGYG 599
Query: 580 TAAVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMF 639
+AAVLPEQGIYLAASIYRPVLQFTDK+ SMLP+K+SQL NDGLL F ENFVKDHLLPTMF
Sbjct: 600 SAAVLPEQGIYLAASIYRPVLQFTDKITSMLPKKHSQLVNDGLLTFTENFVKDHLLPTMF 659
Query: 640 VDYRKGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPK 699
VDYRKGVQQAISS AAFRPRAHT TY ++EKGRP+LQGLLAID LAKEVLGWAQAMPK
Sbjct: 660 VDYRKGVQQAISSAAAFRPRAHT-TTYTATVEKGRPILQGLLAIDLLAKEVLGWAQAMPK 718
Query: 700 FAADLVKYVQTFLERTYERCRTSYMETLL 728
FA DLVKYVQTFLERT+ERCRTSYME +L
Sbjct: 719 FATDLVKYVQTFLERTFERCRTSYMEAVL 747
>sp|O35382|EXOC4_MOUSE Exocyst complex component 4 OS=Mus musculus GN=Exoc4 PE=1 SV=2
Length = 975
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104
+DRE E L++ + + +DE++ ++T AI+ Y I + S IK++K +L
Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97
Query: 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLH 164
K L + +L +LW + +H+++LLD+IE I +VP ++E+ +A K Y +A +
Sbjct: 98 LSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDML 157
Query: 165 AQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209
+ LE LQ G L D+R EL + L ++E+LH HLY
Sbjct: 158 VSAVESLEGPLLQVEG-LSDLRLELHSKKMNLHLVLIEELHRHLY 201
>sp|Q62824|EXOC4_RAT Exocyst complex component 4 OS=Rattus norvegicus GN=Exoc4 PE=1 SV=1
Length = 975
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104
+DRE E L++ + + +DE++ ++T AI+ Y I + S IK++K +L
Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97
Query: 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLH 164
K L + +L +LW + +H+++LLD+IE I +VP ++E+ +A K Y +A +
Sbjct: 98 LSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDML 157
Query: 165 AQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209
+ LE LQ G L D+R EL + L ++E+LH HLY
Sbjct: 158 VSAVESLEGPLLQVEG-LSDLRLELHSKKMNLHLVLIEELHRHLY 201
>sp|Q96A65|EXOC4_HUMAN Exocyst complex component 4 OS=Homo sapiens GN=EXOC4 PE=1 SV=1
Length = 974
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 13/225 (5%)
Query: 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104
+DRE E L++ + + +DE++ ++T AI+ Y I + S IK++K +L
Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97
Query: 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLH 164
K L + +L +LW + +H+++LLD+IE I +VP ++E+ +A K Y +A +
Sbjct: 98 LSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDML 157
Query: 165 AQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEM 224
+ LE LQ G L D+R EL + L ++++LH HLY + +S V+ ++
Sbjct: 158 VSAVESLEGPLLQVEG-LSDLRLELHSKKMNLHLVLIDELHRHLYIKS--TSRVVQRNKE 214
Query: 225 DDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSST 269
++ + V A S PL T L +F D SH ST
Sbjct: 215 KGKISSLVKDA-----SVPLIDVTNLPTPRKF-----LDTSHYST 249
>sp|Q9HE88|SEC8_NEUCR Probable exocyst complex component sec8 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=sec-8 PE=3 SV=1
Length = 1111
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%)
Query: 43 TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKV 102
+S R E + + + ++E + +VH +H GFN +I + +I S + ++ LK
Sbjct: 115 SSVGRAHEYRNFQQTHQFLQESLKNIVHDHHQGFNSSIGTFHKIQGSIQSSQKKVRALKE 174
Query: 103 DLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162
LA +K L T N +L QL S ++ L++++ + VP ++E I+ K++ AV+
Sbjct: 175 SLAASKTALCTTNPELKQLHATSRMYDGVLQTLNELDDLRTVPDQLEARISEKRFLTAVE 234
Query: 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEY 214
+ + L + L +GAL D+RS L L ++E+LH HLY + Y
Sbjct: 235 VLQNALRKLRKPELDNIGALSDLRSYLANQETALMDILVEELHEHLYLKSPY 286
>sp|Q54P76|EXOC4_DICDI Exocyst complex component 4 OS=Dictyostelium discoideum GN=exoc4
PE=3 SV=1
Length = 1182
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 19 ELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQN---------DIIEEV---VD 66
E +++ + ++ S+P H + + R + ++ N D ++EV D
Sbjct: 5 EEKKLDENKISKVLSSIPEQYHKTSFQARRTALDYMRSSNRKELLNQIGDWLDEVNVETD 64
Query: 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126
+V Y GFNK+I NYS+IL S + + ++ E + + + +LW R++
Sbjct: 65 NIVDVYFQGFNKSIHNYSRILEFMGTSHGNALLMSKEVEETNKLINFNGTGIERLWKRNL 124
Query: 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVR 186
++I +L+++E + KVP + K I G + A + S L L V AL D+R
Sbjct: 125 EYYYMIEILEKMEELKKVPDLLNKYIKGNHFVHAANILVNSISTLNERDLVNVNALMDLR 184
Query: 187 SELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDE 227
L + + ++E L+ H+Y + + S L E DDE
Sbjct: 185 QMLVEKKESFKDMLVEKLNDHIYLKTKSS---LKAFEYDDE 222
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 570 GTNVLQEGYGTAAVLP--EQGIYLAASIYRPVLQFTDKVASMLPQK-------------- 613
G + + G AV+ + Y IY +++FTD + L +
Sbjct: 640 GADAIDSNSGGPAVISIFKASQYNVTPIYPMIVKFTDHLDKTLRDRTGTPTTTKTTTTIT 699
Query: 614 -------YSQLGNDGLL-AFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAAT 665
++Q GLL ++++FV + L + DY+ +I S AF+P
Sbjct: 700 TTTTNSYHNQNSKKGLLRLYIDDFVHRNFLQHIKNDYKDRFAHSIESTEAFKPLERYKLV 759
Query: 666 YVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAADLVKYVQTFLERTYERCRTSY 723
+ +++ +P+L L I E+ AM + + +Q L R YE+C + +
Sbjct: 760 F--RLKETKPILNSTLQIFQFVIELFSDIVAMSHYVVEFGAIIQVSLLRYYEKCLSKF 815
>sp|Q9VNH6|EXOC4_DROME Exocyst complex component 4 OS=Drosophila melanogaster GN=sec8 PE=1
SV=3
Length = 985
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Query: 43 TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKV 102
T+++R+ E Q ++ + + ++E+V + + + +SQ+ + S E I +K
Sbjct: 38 TTEERQKEKQKIEAEFKRSDLRLNELVSRHDQQLTQVLPLFSQVSSEVTASRERIHAVKE 97
Query: 103 DLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162
+L KR L R +L ++W +V ++++ +L+QI+ + KVP R+ A +QY
Sbjct: 98 NLGVCKRLLQCRRDELRKMWMDAVQHKYVLEMLEQIQELRKVPQRVVGYTAKRQY----- 152
Query: 163 LHAQSAL---MLEREG-LQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209
LHA AL + G LQ V L D+R++L R L+ ++ E+L +Y
Sbjct: 153 LHASKALTDALTTLNGPLQAVEGLSDLRTDLQTRRQQLYQRLHEELVTQVY 203
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 585 PEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRK 644
P+Q I +Y P++ + ++ + + K Q L F++N++KD L + +
Sbjct: 495 PDQSII--TKVYLPLMGYIKEIENFMKCKPGQPC--SLHDFLDNYIKDTFLTK---GHNR 547
Query: 645 GVQQAISSPAAFRP--RAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAA 702
+Q I S + + R + + ++ RP+LQ + ++ E Q +P ++
Sbjct: 548 NLQLTIESLSKNQDAWRTIISPEEIKALNLSRPLLQSTVMVERRLMETKNLIQDLPCYSE 607
Query: 703 DLVKYVQTFLERTYERCRTSY 723
DL+K V L+ E C+ +Y
Sbjct: 608 DLLKMVCALLKAYREICQAAY 628
>sp|P32855|SEC8_YEAST Exocyst complex component SEC8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC8 PE=1 SV=1
Length = 1065
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 95/206 (46%), Gaps = 11/206 (5%)
Query: 15 YLREELARIEVSWVAPRFDSLPHVVHILTSKD--------REGEVQILKDQNDIIEEVVD 66
+L+ +L RI + W D+ + L D R E LK Q I +
Sbjct: 34 HLQNDLNRINLQWNRILSDNTNPLELALAFLDDTSVGLGHRYEEFNQLKSQ---IGSHLQ 90
Query: 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126
+VV+ + FN + +Y + + ++ E LK L EA ++ T L +L ++
Sbjct: 91 DVVNEHSQVFNTNVASYGKAVSSIMQAQEQTLNLKNCLKEANEKITTDKGSLQELNDNNL 150
Query: 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVR 186
+I +L IE + ++P +IE+ I + ++ L + +++ + L+TV L+ +
Sbjct: 151 KYTKMIDVLVNIEELLQIPEKIEENIRKENFHQVQILLERGFILMNNKSLKTVEILKPIN 210
Query: 187 SELTKLRGVLFYKVLEDLHAHLYNRG 212
+L +LF ++E++H +Y++
Sbjct: 211 QQLELQEHLLFNNLIEEIHDIMYSKS 236
>sp|Q9XWS2|EXOC4_CAEEL Exocyst complex component 4 OS=Caenorhabditis elegans GN=sec-8 PE=2
SV=2
Length = 893
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 64 VVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123
++D +V + K + ++ + S E I ++ L K L R L +LW+
Sbjct: 66 LIDRLVKNHQQDVEKCLVSFRDVSSKISNCRERIHNVRNALHTVKSLLELRRDDLKKLWH 125
Query: 124 RSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183
+ + + ++ ++E + + P++IE LI+ +QY A +S ++ L V L
Sbjct: 126 ENAQQKSVCEIMAKLEELREAPSKIENLISKEQYQQAADTVTESRELINGR-LSRVEGLS 184
Query: 184 DVRSELTKLRGVLFYKVLEDL 204
+ +E+ + +L K+ + L
Sbjct: 185 HLSAEIERFTKILIDKINDTL 205
>sp|O74562|SEC8_SCHPO Exocyst complex component sec8 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec8 PE=1 SV=2
Length = 1073
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN-KQ 117
D I + + H + F + I Y +I+ + I LK L ++ +G N K+
Sbjct: 98 DRISAALQTIAHTHKDDFTRGISAYGEIMEGIQKCNSRIIALKQSLEASQECIGNTNSKE 157
Query: 118 LHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQ 177
L Q RS + +IS+L ++ ++ L+ KQYY A L + L R
Sbjct: 158 LQQTLARSSQYKKVISVLKELNEANQLFDNFHTLVDSKQYYHASDLIRRVWDELSRSDFD 217
Query: 178 TVGALQDVRSELTKL 192
+ ++ +S +T L
Sbjct: 218 GILVVEQFKSRMTGL 232
>sp|P82094|TMF1_HUMAN TATA element modulatory factor OS=Homo sapiens GN=TMF1 PE=1 SV=2
Length = 1093
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 54 LKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113
L +QND +EE V E+ T Q Y+ IL+++ E AE +EL++DL + K T
Sbjct: 1024 LTNQNDELEEKVKEIPK-LRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMYKT 1082
Query: 114 RNKQLHQLWYRSVT 127
Q+ +L +S++
Sbjct: 1083 ---QIDELLRQSLS 1093
>sp|B9EKI3|TMF1_MOUSE TATA element modulatory factor OS=Mus musculus GN=Tmf1 PE=1 SV=2
Length = 1091
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 54 LKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113
L +QND +EE V E+ Q Y+ IL+++ E AE +EL++DL + K T
Sbjct: 1022 LTNQNDELEEKVKEIPK-LRVQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMYKT 1080
Query: 114 R 114
+
Sbjct: 1081 Q 1081
>sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (isolate NW) PE=3 SV=1
Length = 2284
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 8/235 (3%)
Query: 174 EGLQTVGALQDVRSELTKLRGVLFYKVLEDL-HAHLYNRGEYSSAVLSMHEMDDEVPTTV 232
E L + +L +RS+ + + L V L +L+ EYS +V + +++P
Sbjct: 1906 EKLSIMSSLVYIRSDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYL--EKLPPGS 1963
Query: 233 AVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSI 292
TT + +L G++ + GL + SH ++F + E GL+I
Sbjct: 1964 YKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAI 2023
Query: 293 GWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIIT 352
+E + S P + ++ ++C +G++ + +++ QR + ++
Sbjct: 2024 SGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPSKASVLSQRKPGIVMQLCA 2083
Query: 353 SKIKAHAQL-INSSRSAIGQAAQTGTTGLHF---MKGQLRSY-QLPKQKRQNGIS 402
IK L I R IG A G F +K L Y L R+NG++
Sbjct: 2084 RAIKEKKTLVIRDERPYIGGWAMACICGESFGFSIKDTLALYANLMGPNRKNGLA 2138
>sp|Q2SFI6|GCSP_HAHCH Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis
(strain KCTC 2396) GN=gcvP PE=3 SV=1
Length = 960
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 5/155 (3%)
Query: 38 VVHILTSKDREGEVQILKD--QNDIIEEVVDEVVHAYHTGFNKAIQNYSQI--LRLFSES 93
++H+ S +V L ++ I E+ + HT FN+ + LR S+
Sbjct: 440 LLHVFASGKPVADVATLDSSAKDAIPAELRRQSAFMTHTVFNRYHSETEMLRYLRRLSDK 499
Query: 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153
++ + L +L + W + H + LDQ EG + A +E++++
Sbjct: 500 DLALDRTMIPLGSCTMKLNATTEMTPVSWDGFCAI-HPFAPLDQTEGYRALIADLERMLS 558
Query: 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSE 188
YAA L + E GL + A R E
Sbjct: 559 AATGYAAFSLQPNAGSQGEYAGLLAIRAYHHSRGE 593
>sp|Q92570|NR4A3_HUMAN Nuclear receptor subfamily 4 group A member 3 OS=Homo sapiens
GN=NR4A3 PE=2 SV=3
Length = 626
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 85 QILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV 144
Q LR F E +SIK+ ++L Q L +++ +S++ + G+ K
Sbjct: 505 QCLRGFGEWLDSIKDFSLNL------------QSLNLDIQALACLSALSMITERHGL-KE 551
Query: 145 PARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204
P R+E+L + ++++ H LE + +GAL ++R T +FY LEDL
Sbjct: 552 PKRVEELC--NKITSSLKDHQSKGQALEPTESKVLGALVELRKICTLGLQRIFYLKLEDL 609
>sp|P54423|WPRA_BACSU Cell wall-associated protease OS=Bacillus subtilis (strain 168)
GN=wprA PE=1 SV=2
Length = 894
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 26/146 (17%)
Query: 270 FDGHDEDGSLEAHDETSLDGLSIGWLAN----STPDEFVEAIRKSDAPLHVKYLQTMVEC 325
FD E+G+ ++ T D +I L + S P E I+K L++K LQ
Sbjct: 245 FDDVSENGASSSYKVTEKDQKAINRLYDKALQSVPSFLKEEIKKQADRLNMKQLQ----- 299
Query: 326 LCILGKVAAAGAIICQRLRPTIHEIITSKI-----------KAHAQLINSSRSAIGQAAQ 374
GK A GAI+ + E+ T+K+ H ++ S SA +
Sbjct: 300 ----GKTA--GAILTENNIAAKSEVQTTKVIFKVKDNKSLSSVHNEMKGFSASAQSKKDI 353
Query: 375 TGTTGLHFMKGQLRSYQLPKQKRQNG 400
+ + L S++LPK ++QNG
Sbjct: 354 SNVKKAKKLFDNLYSFELPKDEKQNG 379
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 33.1 bits (74), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 1 MDIFDGLPISPEKAYLREELARIEV----SWVAPRFDSLPHVVHILTSKDREGEVQILKD 56
+DI +GLP+S E +Y++E LAR PR + V I D +++ K
Sbjct: 338 LDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQI--KNDVHIQLEQTKR 395
Query: 57 QNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94
N + + E+ + G N A + + + LF+ A
Sbjct: 396 TNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVA 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,420,490
Number of Sequences: 539616
Number of extensions: 10729563
Number of successful extensions: 30222
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 30185
Number of HSP's gapped (non-prelim): 55
length of query: 731
length of database: 191,569,459
effective HSP length: 125
effective length of query: 606
effective length of database: 124,117,459
effective search space: 75215180154
effective search space used: 75215180154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)