Query 004782
Match_columns 731
No_of_seqs 154 out of 193
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 2.8E-76 6.2E-81 664.8 43.0 591 8-728 18-633 (982)
2 PF04048 Sec8_exocyst: Sec8 ex 100.0 5.8E-33 1.3E-37 266.2 16.4 137 15-151 1-142 (142)
3 PF10475 DUF2450: Protein of u 99.5 1.6E-12 3.4E-17 139.4 22.1 186 20-207 1-191 (291)
4 KOG2115 Vacuolar sorting prote 99.2 3E-09 6.4E-14 123.8 23.7 201 6-206 181-400 (951)
5 PF06248 Zw10: Centromere/kine 98.0 0.0003 6.4E-09 83.1 19.7 171 42-212 7-182 (593)
6 PF15469 Sec5: Exocyst complex 97.9 0.00038 8.3E-09 69.7 16.2 141 63-204 2-148 (182)
7 PF04100 Vps53_N: Vps53-like, 97.7 0.0023 5E-08 71.6 20.2 179 30-209 2-185 (383)
8 PF04124 Dor1: Dor1-like famil 97.7 0.0025 5.4E-08 70.1 19.8 158 48-207 13-170 (338)
9 KOG2176 Exocyst complex, subun 97.3 0.014 3.1E-07 68.9 19.5 172 36-208 35-206 (800)
10 PF10392 COG5: Golgi transport 96.8 0.041 8.9E-07 52.4 14.8 87 26-112 2-96 (132)
11 PF06148 COG2: COG (conserved 96.8 0.0012 2.7E-08 62.8 3.8 126 26-151 7-132 (133)
12 KOG2069 Golgi transport comple 96.4 0.13 2.7E-06 59.3 17.2 170 37-208 24-195 (581)
13 KOG2180 Late Golgi protein sor 96.3 0.29 6.3E-06 57.5 19.4 190 18-207 5-199 (793)
14 KOG2346 Uncharacterized conser 96.0 0.056 1.2E-06 60.8 11.4 200 5-218 14-216 (636)
15 PF08700 Vps51: Vps51/Vps67; 94.1 0.71 1.5E-05 40.3 10.7 74 29-109 3-79 (87)
16 KOG2307 Low density lipoprotei 92.3 3.3 7.1E-05 47.8 14.9 134 3-142 10-150 (705)
17 PF10191 COG7: Golgi complex c 91.1 32 0.0007 42.3 22.9 185 26-212 4-199 (766)
18 KOG0412 Golgi transport comple 86.8 28 0.0006 41.7 17.1 160 46-208 35-204 (773)
19 PF04437 RINT1_TIP1: RINT-1 / 83.8 4.1 8.9E-05 47.3 8.9 129 593-727 97-229 (494)
20 PF09763 Sec3_C: Exocyst compl 83.7 29 0.00063 42.2 16.5 149 60-208 9-179 (701)
21 PF02601 Exonuc_VII_L: Exonucl 78.0 69 0.0015 34.8 15.6 74 50-123 148-227 (319)
22 KOG1961 Vacuolar sorting prote 75.9 1.5E+02 0.0032 35.3 17.5 185 12-208 18-215 (683)
23 PRK11637 AmiB activator; Provi 72.4 1.2E+02 0.0026 34.6 16.2 146 47-198 45-191 (428)
24 PF07899 Frigida: Frigida-like 71.8 11 0.00023 40.9 7.1 80 113-198 146-225 (290)
25 cd07614 BAR_Endophilin_A2 The 68.7 1.6E+02 0.0034 30.9 20.7 154 16-171 46-216 (223)
26 cd07613 BAR_Endophilin_A1 The 66.9 1.7E+02 0.0037 30.6 17.2 124 46-171 85-216 (223)
27 PF12854 PPR_1: PPR repeat 66.8 9.7 0.00021 27.4 3.8 26 315-341 7-32 (34)
28 cd07615 BAR_Endophilin_A3 The 66.8 1.7E+02 0.0037 30.6 20.1 121 45-167 84-212 (223)
29 KOG2273 Membrane coat complex 65.1 2.1E+02 0.0046 33.2 16.5 160 48-214 280-446 (503)
30 KOG2033 Low density lipoprotei 65.0 70 0.0015 38.4 12.0 105 62-169 37-141 (863)
31 PF04129 Vps52: Vps52 / Sac2 f 64.5 2E+02 0.0043 33.7 16.1 121 89-209 22-154 (508)
32 PF05266 DUF724: Protein of un 63.8 40 0.00086 34.4 8.9 24 1-24 18-41 (190)
33 PF08317 Spc7: Spc7 kinetochor 59.7 1E+02 0.0022 33.9 11.9 127 47-192 161-288 (325)
34 KOG2211 Predicted Golgi transp 59.2 4E+02 0.0086 32.3 17.0 138 46-190 72-218 (797)
35 TIGR03185 DNA_S_dndD DNA sulfu 58.1 1.5E+02 0.0032 35.9 13.9 31 182-212 492-522 (650)
36 PRK11637 AmiB activator; Provi 56.8 3.2E+02 0.007 31.1 15.8 52 75-126 83-134 (428)
37 cd07665 BAR_SNX1 The Bin/Amphi 56.4 2.6E+02 0.0057 29.4 15.0 122 46-173 77-198 (234)
38 PTZ00464 SNF-7-like protein; P 56.0 2.5E+02 0.0055 29.1 13.3 71 131-208 77-147 (211)
39 PF10186 Atg14: UV radiation r 55.7 2.5E+02 0.0055 29.6 14.0 83 48-133 26-108 (302)
40 PF09325 Vps5: Vps5 C terminal 55.5 2.5E+02 0.0053 28.8 13.9 96 46-141 79-175 (236)
41 cd07616 BAR_Endophilin_B1 The 55.3 2.4E+02 0.0052 29.6 13.1 142 62-208 71-229 (229)
42 cd07592 BAR_Endophilin_A The B 53.6 1.5E+02 0.0032 31.1 11.2 66 46-111 85-151 (223)
43 PRK10869 recombination and rep 52.8 4.6E+02 0.01 31.1 18.1 13 183-195 358-370 (553)
44 PLN03094 Substrate binding sub 51.5 2.4E+02 0.0052 31.8 13.1 34 138-171 336-369 (370)
45 PF09325 Vps5: Vps5 C terminal 50.5 2.9E+02 0.0064 28.2 15.5 44 52-96 34-77 (236)
46 cd07617 BAR_Endophilin_B2 The 50.3 3.2E+02 0.007 28.6 17.1 107 46-152 90-203 (220)
47 PF06160 EzrA: Septation ring 49.2 4.4E+02 0.0096 31.3 15.7 81 82-172 123-204 (560)
48 PF10136 SpecificRecomb: Site- 48.0 1.7E+02 0.0036 35.5 11.8 101 7-107 93-236 (643)
49 KOG2460 Signal recognition par 47.6 5.4E+02 0.012 30.4 15.1 120 48-173 300-454 (593)
50 cd07600 BAR_Gvp36 The Bin/Amph 47.0 3.7E+02 0.0081 28.5 13.1 142 61-208 79-242 (242)
51 KOG2196 Nuclear porin [Nuclear 45.6 2.2E+02 0.0047 30.2 10.7 80 60-153 71-151 (254)
52 PF06160 EzrA: Septation ring 45.0 6E+02 0.013 30.2 17.3 125 52-183 347-471 (560)
53 PF07851 TMPIT: TMPIT-like pro 44.6 1.4E+02 0.003 33.1 9.7 54 46-110 8-61 (330)
54 KOG3501 Molecular chaperone Pr 43.9 2.2E+02 0.0049 26.2 9.2 78 82-159 4-94 (114)
55 TIGR00996 Mtu_fam_mce virulenc 42.9 4.4E+02 0.0095 28.0 14.6 55 68-122 182-236 (291)
56 COG4026 Uncharacterized protei 42.7 4.2E+02 0.0092 27.8 12.7 56 80-135 127-189 (290)
57 PRK14140 heat shock protein Gr 42.6 1.1E+02 0.0024 31.3 8.0 16 128-143 90-105 (191)
58 cd07664 BAR_SNX2 The Bin/Amphi 42.4 4.3E+02 0.0094 27.8 12.8 157 25-206 21-195 (234)
59 PF04156 IncA: IncA protein; 42.4 3.6E+02 0.0078 26.8 12.9 18 109-126 158-175 (191)
60 PF15290 Syntaphilin: Golgi-lo 41.3 2.1E+02 0.0046 30.9 10.0 44 86-129 115-158 (305)
61 PRK00286 xseA exodeoxyribonucl 40.1 3.7E+02 0.0081 30.6 12.9 60 48-107 263-324 (438)
62 COG4717 Uncharacterized conser 39.6 7.2E+02 0.016 31.2 15.1 93 45-146 177-270 (984)
63 PF08385 DHC_N1: Dynein heavy 39.0 4.2E+02 0.0091 31.0 13.5 141 13-173 44-192 (579)
64 PF04048 Sec8_exocyst: Sec8 ex 38.3 2.9E+02 0.0062 26.6 9.9 73 46-118 23-102 (142)
65 cd07623 BAR_SNX1_2 The Bin/Amp 38.3 4.7E+02 0.01 27.1 15.9 150 51-206 21-185 (224)
66 KOG2148 Exocyst protein Sec3 [ 37.5 3.6E+02 0.0078 32.6 11.9 149 59-208 196-362 (867)
67 cd07592 BAR_Endophilin_A The B 36.9 5.1E+02 0.011 27.1 19.4 60 148-207 157-219 (223)
68 cd07624 BAR_SNX7_30 The Bin/Am 35.0 5E+02 0.011 26.4 16.3 72 46-117 67-138 (200)
69 cd07595 BAR_RhoGAP_Rich-like T 34.5 5.8E+02 0.013 27.0 17.7 67 46-112 78-145 (244)
70 COG1463 Ttg2C ABC-type transpo 34.5 6.8E+02 0.015 27.8 15.7 61 63-123 165-225 (359)
71 KOG0612 Rho-associated, coiled 34.3 7.3E+02 0.016 32.3 14.4 84 65-154 513-596 (1317)
72 TIGR00606 rad50 rad50. This fa 34.2 1.2E+03 0.026 30.7 17.6 34 117-150 472-505 (1311)
73 KOG3745 Exocyst subunit - Sec1 33.7 7.8E+02 0.017 30.3 14.2 163 30-207 47-219 (763)
74 TIGR00634 recN DNA repair prot 33.0 8.9E+02 0.019 28.7 18.6 13 16-28 159-171 (563)
75 PF10475 DUF2450: Protein of u 32.1 6.7E+02 0.014 27.0 13.2 55 89-143 82-139 (291)
76 PHA02562 46 endonuclease subun 32.1 8.7E+02 0.019 28.3 16.6 34 69-102 215-248 (562)
77 KOG0796 Spliceosome subunit [R 31.9 3.7E+02 0.0081 29.6 10.3 73 84-168 86-158 (319)
78 COG5491 VPS24 Conserved protei 31.9 6E+02 0.013 26.3 13.8 79 74-152 24-105 (204)
79 PRK11281 hypothetical protein; 31.8 8.6E+02 0.019 31.6 15.1 123 86-212 126-254 (1113)
80 PF12128 DUF3584: Protein of u 31.4 9.3E+02 0.02 31.5 15.8 79 40-119 761-854 (1201)
81 PHA02503 putative transcriptio 31.4 46 0.001 26.3 2.5 20 622-641 26-45 (57)
82 PF11887 DUF3407: Protein of u 29.9 7.1E+02 0.015 26.6 13.2 110 46-173 28-137 (267)
83 PRK10884 SH3 domain-containing 29.8 6.4E+02 0.014 26.0 11.5 59 46-111 90-148 (206)
84 KOG2347 Sec5 subunit of exocys 29.7 3.7E+02 0.008 33.5 10.7 170 27-202 166-350 (934)
85 cd07665 BAR_SNX1 The Bin/Amphi 29.5 4.7E+02 0.01 27.6 10.5 74 47-126 27-100 (234)
86 KOG0994 Extracellular matrix g 29.4 1.4E+03 0.03 29.9 21.2 64 66-129 1569-1632(1758)
87 TIGR00237 xseA exodeoxyribonuc 29.0 8.9E+02 0.019 27.8 13.6 60 48-107 258-319 (432)
88 KOG2216 Conserved coiled/coile 28.9 6E+02 0.013 27.6 11.0 137 53-197 15-171 (303)
89 PRK04778 septation ring format 28.9 1E+03 0.023 28.2 16.0 107 74-183 369-475 (569)
90 PRK10929 putative mechanosensi 28.3 1.4E+03 0.031 29.6 18.2 119 84-212 105-235 (1109)
91 KOG0963 Transcription factor/C 28.1 1.1E+03 0.024 28.3 15.2 122 69-204 230-353 (629)
92 smart00188 IL10 Interleukin-10 27.9 4.8E+02 0.01 25.3 9.3 33 82-114 65-97 (137)
93 COG3352 FlaC Putative archaeal 27.7 6.1E+02 0.013 25.1 10.3 92 11-113 44-140 (157)
94 COG4477 EzrA Negative regulato 26.7 1.1E+03 0.024 27.9 16.4 82 75-173 126-208 (570)
95 PF04108 APG17: Autophagy prot 26.1 1E+03 0.022 27.1 16.9 179 12-206 148-357 (412)
96 cd07610 FCH_F-BAR The Extended 26.0 6.3E+02 0.014 24.7 14.8 35 152-186 123-157 (191)
97 PF07139 DUF1387: Protein of u 25.8 5.3E+02 0.011 28.3 10.2 85 78-164 167-268 (302)
98 PRK09039 hypothetical protein; 25.3 9.6E+02 0.021 26.6 14.7 13 46-58 78-90 (343)
99 PRK15374 pathogenicity island 24.6 1.2E+03 0.027 27.6 15.2 48 57-105 125-172 (593)
100 PF13514 AAA_27: AAA domain 24.4 1.1E+03 0.023 30.6 14.5 94 44-146 145-238 (1111)
101 cd07596 BAR_SNX The Bin/Amphip 24.1 7.1E+02 0.015 24.6 16.3 46 50-96 12-57 (218)
102 TIGR02606 antidote_CC2985 puta 23.9 66 0.0014 27.2 2.5 30 146-175 12-41 (69)
103 KOG4643 Uncharacterized coiled 23.8 1.6E+03 0.035 28.7 15.2 131 74-204 467-609 (1195)
104 PRK04778 septation ring format 23.5 1.3E+03 0.028 27.4 17.4 78 84-171 129-207 (569)
105 PF08393 DHC_N2: Dynein heavy 23.3 2.9E+02 0.0063 30.9 8.3 97 14-113 142-239 (408)
106 TIGR03545 conserved hypothetic 23.0 3.5E+02 0.0076 32.2 9.0 12 136-147 251-262 (555)
107 cd05392 RasGAP_Neurofibromin_l 23.0 4.6E+02 0.0099 28.7 9.5 44 617-660 69-112 (323)
108 PF04740 LXG: LXG domain of WX 22.5 6.7E+02 0.014 25.1 10.0 28 98-125 141-168 (204)
109 COG5113 UFD2 Ubiquitin fusion 22.3 1.5E+03 0.032 27.7 14.4 134 52-194 652-836 (929)
110 PHA00212 putative transcriptio 22.1 84 0.0018 25.4 2.5 20 622-641 29-48 (63)
111 PF15619 Lebercilin: Ciliary p 21.7 8.7E+02 0.019 24.8 12.6 82 65-146 38-119 (194)
112 KOG2176 Exocyst complex, subun 21.7 1.6E+03 0.035 27.9 14.5 128 58-212 46-173 (800)
113 cd07594 BAR_Endophilin_B The B 21.7 9.5E+02 0.021 25.2 12.9 139 64-208 73-229 (229)
114 PRK14160 heat shock protein Gr 21.3 7.2E+02 0.016 25.8 9.8 17 128-144 114-130 (211)
115 TIGR01834 PHA_synth_III_E poly 21.1 4.1E+02 0.009 29.4 8.4 74 50-131 230-304 (320)
116 COG5143 SNC1 Synaptobrevin/VAM 21.1 2.1E+02 0.0045 29.2 5.7 125 8-139 26-170 (190)
117 PF11053 DNA_Packaging: Termin 21.0 5.5E+02 0.012 25.3 8.3 57 46-102 46-114 (153)
118 cd07596 BAR_SNX The Bin/Amphip 20.9 8.2E+02 0.018 24.2 16.3 79 47-125 62-140 (218)
119 PF13870 DUF4201: Domain of un 20.7 8.2E+02 0.018 24.1 14.2 97 63-159 52-155 (177)
120 COG4942 Membrane-bound metallo 20.4 1.3E+03 0.029 26.5 15.9 112 85-203 77-194 (420)
121 cd07654 F-BAR_FCHSD The F-BAR 20.3 1.1E+03 0.023 25.3 16.1 51 51-101 108-158 (264)
122 PF07083 DUF1351: Protein of u 20.0 8.6E+02 0.019 25.1 10.3 133 58-206 17-155 (215)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-76 Score=664.78 Aligned_cols=591 Identities=19% Similarity=0.221 Sum_probs=451.3
Q ss_pred CCCCchHHHHHHHHHhHhhcCCCCCCchHHHHHhhcc--CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHH
Q 004782 8 PISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ 85 (731)
Q Consensus 8 p~~~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s--~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~ 85 (731)
|+.-++....+...+|...|. .+.+. ++||.++++||+.++..+.+|+++|++|+|+|+++|.+|++
T Consensus 18 ~~n~~~d~sn~~G~lInvi~n-----------L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~ 86 (982)
T KOG3691|consen 18 YVNYGTDMSNELGLLINVIRN-----------LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGE 86 (982)
T ss_pred cccccCCcccccchhhhHHHh-----------hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667778887777 44432 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHH
Q 004782 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHA 165 (731)
Q Consensus 86 i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~ 165 (731)
|++.|+.||++|.+||++|.+||++|+|+|++|++||.++.+||+||++|++||++++||++||.+|++|+|++|.++|.
T Consensus 87 i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~ 166 (982)
T KOG3691|consen 87 ISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLT 166 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcchhhhcccccCCCCccccccccccCCCCCcc
Q 004782 166 QSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLS 245 (731)
Q Consensus 166 ~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~lY~Ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (731)
+++.+++++ |.+|.+|+|||++|+.+++.|+++|+||||+++|+|+..... .+..+ .+.++.
T Consensus 167 ~~~~~lng~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l-~~~~~-~~~~~s--------------- 228 (982)
T KOG3691|consen 167 RAWELLNGP-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPL-VSYCR-TNPLSS--------------- 228 (982)
T ss_pred HHHHHhcCc-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhH-Hhhhc-CCchhh---------------
Confidence 999999996 999999999999999999999999999999999999753111 11111 111111
Q ss_pred ccccccCCCCCCcccccCCCCCCCCCCCCCCCCccccccccccccccccc-----cC----CCch--HHHHHhhcC-CCc
Q 004782 246 RRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWL-----AN----STPD--EFVEAIRKS-DAP 313 (731)
Q Consensus 246 ~~t~~~~~n~~~~~~l~~~s~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l-----~~----~~~~--~~~e~~~~~-~~~ 313 (731)
+ +. +.+++.++.++..+++.+.+.+ .+ .+.+ ...+++.-. |++
T Consensus 229 -~--l~----------------------~~~~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~ 283 (982)
T KOG3691|consen 229 -R--LN----------------------DFLYNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEA 283 (982)
T ss_pred -H--HH----------------------HHhhcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhh
Confidence 0 00 0011111111111111110000 00 0000 001111122 555
Q ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHhHHHHHHhhhccccccccccccCccccccccccccccccc
Q 004782 314 LHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLP 393 (731)
Q Consensus 314 ~s~~yi~~lve~L~~LgkL~~Al~~i~qRl~~EL~~iV~~ti~e~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 393 (731)
.+-.|+.++++.++++.|+|.++++|..|+.+|+++||.+++..++.. |. +..
T Consensus 284 ~sslf~~il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~i~~~-----------------------g~----~~~ 336 (982)
T KOG3691|consen 284 NSSLFRRILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYDISLS-----------------------GE----TDR 336 (982)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhcc-----------------------cc----chh
Confidence 677788999999999999999999999999999999998754444221 10 000
Q ss_pred ccccccCccccccccccCccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccCCCC
Q 004782 394 KQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANW 473 (731)
Q Consensus 394 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~l~eLl~~lF~k~~~V~~~H~vv~e~~~~~~~~~~~~~~~~~~~~~~~ 473 (731)
+ +.. .+....+|.++||.||.||.++++.|.++++.... .+.=.|.+..
T Consensus 337 e----~at------------------~~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~----~~vv~P~~sq----- 385 (982)
T KOG3691|consen 337 E----HAT------------------FDTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQ----NDVVSPKVSQ----- 385 (982)
T ss_pred h----hhh------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccCCcccC-----
Confidence 1 100 01112379999999999999999999999884331 1221222111
Q ss_pred CCCCCccccCCCChHHhHHHHHHHHHHHHHHHhhcCCcchhh-hHHHH----------HHHhhccCCCCCCCCCCCCCcc
Q 004782 474 NPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASA-DAAVQ----------TARLASKAPSKEKRDGSEDGLT 542 (731)
Q Consensus 474 ~~~s~~s~~~~y~~~~vW~~iQ~El~~LL~dYL~~~~~~~~~-~~~~~----------~~~~as~~p~k~k~~~~~~~~~ 542 (731)
...|++.++|..+|+||+.||.+||+..+..... +++.+ .+.++... ..+++ ..+
T Consensus 386 --------~d~f~~~~~W~k~qs~ielllsE~i~~nn~~~~~~e~s~~~sp~s~~r~~~~~f~~e~-----~~~~~-s~~ 451 (982)
T KOG3691|consen 386 --------KDTFDFTDFWQKAQSEIELLLSEYIDNNNNSVKGTEMSINNSPASNERKKLFDFTNEI-----AVEPN-SNL 451 (982)
T ss_pred --------CCcccHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCCcchhHHHHhhccc-----cCCCC-ccc
Confidence 1269999999999999999999999887764443 22211 11111111 12222 368
Q ss_pred eeeecCCCccccCcccccccccccccCCCCccccCccccccccCCCccchhhhhHHHHHHHHHHHhhCCCCCcccccchH
Q 004782 543 FAFRFTDATISIPNQGADLIRQGWSRRGTNVLQEGYGTAAVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGL 622 (731)
Q Consensus 543 F~F~~s~~~~s~~~~~~~~~~~~~~~s~~~~~~e~~~~~~vl~~p~ifn~~~I~~p~l~Fi~~i~~ilp~~~~~~~~~~l 622 (731)
|.|+++.++..+..+...++...+..++--...+.+.-.+.+|+||+|||++||+|++.|++.++.+++++. ..+|.+
T Consensus 452 f~~~~~~~a~~k~~~l~~qrs~~~~~~~el~~g~s~e~~e~ic~Psvfni~vI~~pll~fie~te~~l~~~p--~q~c~l 529 (982)
T KOG3691|consen 452 FYHRINELANEKAPELILQRSNASVSTIELFSGSSKEIVELICKPSVFNIKVILPPLLRFIEETESILKNPP--IQPCSL 529 (982)
T ss_pred chhHHHHHhhhccchhhhhhhhhhhccchhccCcchhhhcccCCcccceeeehhhHHHHHHHHHHHHcCCCC--CCCchH
Confidence 999999888877766433333332211111111222334669999999999999999999999999998875 568999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCccccccCCccccccccccCccccchHHHHHHHHHHHHHHHHhchHHHH
Q 004782 623 LAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAA 702 (731)
Q Consensus 623 ~~Fl~~Fv~~~FLp~l~~~~~~~~~~~~~~~dAfk~~~~~~~~~~~~l~~~rPil~~~~~v~~~i~el~~~l~t~P~y~~ 702 (731)
++|+++||+++||||+...+...|+.++++.||||...+|+. .+.++..+|++|.++.+..-+-++...+++++.|.+
T Consensus 530 ~~Fm~~yi~~sFl~qv~~~m~~~ie~~~k~~~a~~l~~s~~~--i~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~ 607 (982)
T KOG3691|consen 530 RNFMDEYIKGSFLPQVYKEMSSHIEGIMKDVDAFRLHRSWKI--IPIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSD 607 (982)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHhhcccCcceeeecCHhh--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004782 703 DLVKYVQTFLERTYERCRTSYMETLL 728 (731)
Q Consensus 703 e~~~lv~t~L~~y~e~C~~~y~~~v~ 728 (731)
.|+.++|..+..|++.|+++|++.|+
T Consensus 608 ~~l~m~~~~~~~Y~~~c~~a~~g~~~ 633 (982)
T KOG3691|consen 608 YLLNMVCNHLSDYLDICRAALRGIVQ 633 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999987
No 2
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=100.00 E-value=5.8e-33 Score=266.16 Aligned_cols=137 Identities=40% Similarity=0.601 Sum_probs=132.7
Q ss_pred HHHHHHHHhHhhcCC---CCCCchHHHHHhhc--cCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHH
Q 004782 15 YLREELARIEVSWVA---PRFDSLPHVVHILT--SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (731)
Q Consensus 15 ~l~~~l~~I~~ew~~---~~f~~~~~~l~~L~--s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~ 89 (731)
.|+++|+.|+++|++ ++|+|+.+||.+|+ +.+|++++.+|++.++.++.+|+++|++||++||+||++|+.|+..
T Consensus 1 ~l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~ 80 (142)
T PF04048_consen 1 ELDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSS 80 (142)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999997 89999999999995 4489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHH
Q 004782 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (731)
Q Consensus 90 i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~l 151 (731)
|++||++|..||++|++||..|+|++++|++||.++++|++||++|++||+|++||++||+|
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.51 E-value=1.6e-12 Score=139.43 Aligned_cols=186 Identities=19% Similarity=0.288 Sum_probs=173.4
Q ss_pred HHHhHhhcCCCCCCchHHHHHhhccC-----chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHH
Q 004782 20 LARIEVSWVAPRFDSLPHVVHILTSK-----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (731)
Q Consensus 20 l~~I~~ew~~~~f~~~~~~l~~L~s~-----~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq 94 (731)
|+.|+..|..++|||..+.+.-+... ..+....+|..+.+.++..|-..|.+||.+|.+++++...|...+.++.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999888554 3355568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHccc
Q 004782 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (731)
Q Consensus 95 ~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~ 174 (731)
..++.+|+.|..++..+....-++.++..+...+.++++.|..|..+.+.-..|+.++++++|..|.+++.++..+++
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~-- 158 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE-- 158 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004782 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (731)
Q Consensus 175 ~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~ 207 (731)
++.++.++++|+.+|+.....+-++|-.+|...
T Consensus 159 ~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 159 ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999988888888654
No 4
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3e-09 Score=123.83 Aligned_cols=201 Identities=13% Similarity=0.233 Sum_probs=176.5
Q ss_pred CCCCCCchHHHHHHHHHhHhhcCCCCCC--------chHHHHHh-hc----cCc--h----hhHHHHHHHHHHHHHHHHH
Q 004782 6 GLPISPEKAYLREELARIEVSWVAPRFD--------SLPHVVHI-LT----SKD--R----EGEVQILKDQNDIIEEVVD 66 (731)
Q Consensus 6 ~~p~~~~~~~l~~~l~~I~~ew~~~~f~--------~~~~~l~~-L~----s~~--~----e~~~~~l~~~~~~l~~~L~ 66 (731)
|.|.|-.-......|+.|..-|-.++|+ .+--+|.+ ++ +.+ + ..--++|..++|.+|-.|-
T Consensus 181 ~~~~~~~~~~~~~~l~sVPsiffk~dF~Lddp~TF~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La 260 (951)
T KOG2115|consen 181 EADGPSTRGGDATDLSSVPSIFFKSDFQLDDPATFHSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLA 260 (951)
T ss_pred CCCCccccccchhhHHhCcchhcCCcccCCCcchHhhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777788899999888876654 33333333 21 112 1 1112688888999999999
Q ss_pred HHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHH
Q 004782 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (731)
Q Consensus 67 ~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~ 146 (731)
.-|..-.+.|..+|.+++.|...+-++-+.|++||++|++........+..+.++..+..++.++.+.|..|+.|.+...
T Consensus 261 ~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~ 340 (951)
T KOG2115|consen 261 QEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQS 340 (951)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 004782 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (731)
Q Consensus 147 kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~ 206 (731)
++..++++.+|..|.+++.....+|.+.+|.+|.+.++||.|+.+..+++-.|+++|+..
T Consensus 341 ~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~ 400 (951)
T KOG2115|consen 341 TVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFST 400 (951)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997899999999999999999999999999999854
No 5
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.99 E-value=0.0003 Score=83.05 Aligned_cols=171 Identities=17% Similarity=0.286 Sum_probs=142.0
Q ss_pred hccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhccCchHHH
Q 004782 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-L-AEAKRRLGTRNKQLH 119 (731)
Q Consensus 42 L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~-L-~~~k~~L~~~~~~L~ 119 (731)
|+.++.+....+|.+....+...+...|++||.+|-..+.+-..++.....-...|..+.+. . ......|..-..++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 44557788889999999999999999999999999999998888877777777777444333 1 223444455556677
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcc---cCCCCCCccHHHHHHHHHhHHHH
Q 004782 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVL 196 (731)
Q Consensus 120 ~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~---~~L~~I~AL~dlR~~L~~q~~~L 196 (731)
.|-.+-..-..++++|..|.++.+.=+.++..+.+++|..|.++|.++...++. ........+..|+.++..++..|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 777777778888999999999999999999999999999999999999999986 34556789999999999999999
Q ss_pred HHHHHHHHHHhHhcCC
Q 004782 197 FYKVLEDLHAHLYNRG 212 (731)
Q Consensus 197 ~d~LieEL~~~lY~Ks 212 (731)
...|-++..+.+-.+.
T Consensus 167 ~~~L~~~w~~lv~~~~ 182 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDS 182 (593)
T ss_pred HHHHHHHHHhheeecC
Confidence 9999999998887765
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=97.92 E-value=0.00038 Score=69.67 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=119.7
Q ss_pred HHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHH
Q 004782 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES------IKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (731)
Q Consensus 63 ~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~------i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~ 136 (731)
..|+.+|.+||..|-++-.+-..|-..+...... +..|.+.+..+.......-..|.+-..+...++.++.+|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999877765 8999999999999998888888888899999999999999
Q ss_pred HHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHH
Q 004782 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (731)
Q Consensus 137 ~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL 204 (731)
.-.-+-.+|.+|...|..++|..|++-..++..+++. ....+..++.+.++.+..-..+-+.|.+.|
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~-~~~~~~vf~~v~~eve~ii~~~r~~l~~~L 148 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEK-YKQQVPVFQKVWSEVEKIIEEFREKLWEKL 148 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 323566666666666555444444444443
No 7
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.74 E-value=0.0023 Score=71.59 Aligned_cols=179 Identities=17% Similarity=0.301 Sum_probs=150.7
Q ss_pred CCCCchHHHHHhhccC----chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004782 30 PRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (731)
Q Consensus 30 ~~f~~~~~~l~~L~s~----~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~ 105 (731)
++|||+.+.=.++.++ +...-...+++....++..+...|.++...=..+=.....+...|.+=-++|..+|..-+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998543 456666778888888899999999988643344444455666677777778888888888
Q ss_pred HHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcc-cCCCCCCccHH
Q 004782 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER-EGLQTVGALQD 184 (731)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~-~~L~~I~AL~d 184 (731)
.+...+..=-.++++|=.........|.+|..+.-|...=++++.++..|+|.+++.+|.-...+++. ....+|+-+..
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999988888751 26789999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHh
Q 004782 185 VRSELTKLRGVLFYKVLEDLHAHLY 209 (731)
Q Consensus 185 lR~~L~~q~~~L~d~LieEL~~~lY 209 (731)
|...+...+..|.+.+.+++.. +|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~-~f 185 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEE-LF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999875 44
No 8
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.71 E-value=0.0025 Score=70.14 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhH
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (731)
..+-+.|.+....++..++++...||..|-.+=.....|...+.+..+++..+...|.+-......-.....+.......
T Consensus 13 ~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~ 92 (338)
T PF04124_consen 13 FSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKK 92 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668999999999999999999999999999999999999999999999999999977666665555555555666666
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004782 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (731)
Q Consensus 128 ~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~ 207 (731)
...+++-.+.+-+|..+|.-++..|.+++|.+|.++.....++..+ ..+++-++.+..+....-..+-..|+.-|+.-
T Consensus 93 ~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~--~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~ 170 (338)
T PF04124_consen 93 ASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSR--FPNIPLVKSIAQEVEAALQQMLSQLINQLRTP 170 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6677777788888889999999999999999999999988776665 45588888998888887777777777777544
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.014 Score=68.89 Aligned_cols=172 Identities=13% Similarity=0.201 Sum_probs=135.0
Q ss_pred HHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 004782 36 PHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (731)
Q Consensus 36 ~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~ 115 (731)
|.+-+++.....+.=+++|+..-..=+..+..+-+.|||+|-.||.--.++.....+=+..|...-.+|.++-+.|-.+.
T Consensus 35 P~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~ 114 (800)
T KOG2176|consen 35 PTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKK 114 (800)
T ss_pred hHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 45555566556666677777776667999999999999999999999999988888888888888889999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHH
Q 004782 116 KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGV 195 (731)
Q Consensus 116 ~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~ 195 (731)
++|.+...-+....+.++.|..-=.+...-.|..++|++|+|+.|.+.+. +++..-=+.+.+..-+.-+-.+.-..+..
T Consensus 115 e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle-~lE~~yL~~~~~~~~~~~i~~~Ip~ik~~ 193 (800)
T KOG2176|consen 115 EDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE-SLEKVYLPRVSNFRFLIVIQNRIPFIKEV 193 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhcccchhhHHHhhcchHHHHH
Confidence 99999999998888999888888888888999999999999999998765 33333223444444444444555566667
Q ss_pred HHHHHHHHHHHhH
Q 004782 196 LFYKVLEDLHAHL 208 (731)
Q Consensus 196 L~d~LieEL~~~l 208 (731)
+-++...++++-+
T Consensus 194 i~~~~~~~~~e~L 206 (800)
T KOG2176|consen 194 IKSKSMSDFREWL 206 (800)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777666
No 10
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.84 E-value=0.041 Score=52.45 Aligned_cols=87 Identities=11% Similarity=0.229 Sum_probs=64.0
Q ss_pred hcCCCCCCchHHHHHhhc--------cCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 004782 26 SWVAPRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (731)
Q Consensus 26 ew~~~~f~~~~~~l~~L~--------s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i 97 (731)
.|-.|+|||..++=.+|. ..+....+.+|....+.+++.|+..|.+||..+-+-...=...-..++.-+..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 355799999999999986 446788899999999999999999999999999766655555444444444555
Q ss_pred HHHHHHHHHHHHHhc
Q 004782 98 KELKVDLAEAKRRLG 112 (731)
Q Consensus 98 ~~lK~~L~~~k~~L~ 112 (731)
..|..+...-+..+.
T Consensus 82 ~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 82 ESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHh
Confidence 554444444444443
No 11
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.77 E-value=0.0012 Score=62.82 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=39.2
Q ss_pred hcCCCCCCchHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004782 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (731)
Q Consensus 26 ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~ 105 (731)
++..++|||-..+...-.-.+.+.-...|....+.++..|-++||++|++|-+-=.+...+-..|.+-+.-+..+++.+.
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~ 86 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVE 86 (133)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 34458999988888732334778888899999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHH
Q 004782 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (731)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~l 151 (731)
+.+..+......+...-.+.....+....|..+-.+..+=.++|.+
T Consensus 87 ~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 87 SVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999999999999877777776666666665555555555555544
No 12
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.13 Score=59.26 Aligned_cols=170 Identities=17% Similarity=0.230 Sum_probs=134.1
Q ss_pred HHHHhhccC--chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004782 37 HVVHILTSK--DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (731)
Q Consensus 37 ~~l~~L~s~--~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~ 114 (731)
++..+.++. ...++...|-+....++..++.+-..+|..|-..=..++.|...++.++.....+--.+-+-.+....=
T Consensus 24 ~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f 103 (581)
T KOG2069|consen 24 YVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRF 103 (581)
T ss_pred HHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHH
Confidence 444555433 456666779999999999999999999999999999999999999999988877666544433333333
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHH
Q 004782 115 NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG 194 (731)
Q Consensus 115 ~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~ 194 (731)
.+....+....-.-+-+++..+++-++..+|+.++..|...+|.+|.++..-+.++-++.+.. +..++++.+....-.
T Consensus 104 ~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~--pvi~~i~~~v~~tv~ 181 (581)
T KOG2069|consen 104 QDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI--PVIQEIATEVEQTVQ 181 (581)
T ss_pred HHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHH
Confidence 344445555555566778888899999999999999999999999999999999988775554 889999999988888
Q ss_pred HHHHHHHHHHHHhH
Q 004782 195 VLFYKVLEDLHAHL 208 (731)
Q Consensus 195 ~L~d~LieEL~~~l 208 (731)
.|-+.|++-|..-+
T Consensus 182 ~ll~qL~~~l~~pl 195 (581)
T KOG2069|consen 182 KLLEQLIQQLRTPL 195 (581)
T ss_pred HHHHHHHHHHhhhh
Confidence 88888888776543
No 13
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.29 Score=57.51 Aligned_cols=190 Identities=14% Similarity=0.227 Sum_probs=144.5
Q ss_pred HHHHHhHhhcCCCCCCchHHHHHhhcc----CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHH
Q 004782 18 EELARIEVSWVAPRFDSLPHVVHILTS----KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (731)
Q Consensus 18 ~~l~~I~~ew~~~~f~~~~~~l~~L~s----~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~S 93 (731)
+++..|....+.++|+.+.+.=.++-. .+.+.-.++++..-..+++.|+.+|..+-+.=.+.=-+-..+...|.+-
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 577788888888999999998888733 2556666777777778899999998865444433333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 004782 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (731)
Q Consensus 94 q~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (731)
-.+|.++|..-+.....+..--.++++|=-.......-|..|..+.-|...=+++..+++++.|-+|+..|.--+.+++-
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555557788888888888889999999999999999999999999999999999988888862
Q ss_pred -cCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004782 174 -EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (731)
Q Consensus 174 -~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~ 207 (731)
..-.+|+-+..|+..+...+..|...+-+.+.+.
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~ 199 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAA 199 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2567788899999999999999999998888554
No 14
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.056 Score=60.77 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=143.1
Q ss_pred CCCCCCCchHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhhHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHhH
Q 004782 5 DGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQI---LKDQNDIIEEVVDEVVHAYHTGFNKAIQ 81 (731)
Q Consensus 5 ~~~p~~~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~---l~~~~~~l~~~L~~vV~~h~q~Fn~sI~ 81 (731)
-|.|-+||..... +-+.+.|||--++..++...+++.-+.. .-.+-..+|.+++-+|.|+|+-|.++-.
T Consensus 14 ~g~pagpdplspt--------DlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATd 85 (636)
T KOG2346|consen 14 LGLPAGPDPLSPT--------DLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATD 85 (636)
T ss_pred cCCCCCCCCCCcc--------ccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcch
Confidence 3677777766543 4466899999988888766655433322 1222357799999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHH
Q 004782 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAV 161 (731)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~ 161 (731)
+-.+|.+.+......+..+-+......+....-.+.|.+=...-.+....-.+|.++..+-..|.++...+....|=+|+
T Consensus 86 Tirkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~av 165 (636)
T KOG2346|consen 86 TIRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAV 165 (636)
T ss_pred HHHHHHhhhhhhcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhh
Confidence 88888888888887777777777665555544444444433333333344456788888889999999999999999999
Q ss_pred HHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcchhh
Q 004782 162 QLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAV 218 (731)
Q Consensus 162 ~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~lY~Ks~~~~~~ 218 (731)
..-..|...+..|+ +.+..++.+. ..+.++++++..|...+..-+.-...+
T Consensus 166 R~~~~A~~~L~qY~--~~psfq~~~~----~seei~~rl~~qL~~rlr~~~sga~~r 216 (636)
T KOG2346|consen 166 RGSSEATGKLRQYD--GRPSFQEDDV----PSEEIRLRLVAQLGTKLRSDSSGAQAR 216 (636)
T ss_pred ccccccccchhhcC--CCCcHHHhcc----chHHHHHHHHHHHHHHhccCCCCchhH
Confidence 98888888776643 4555554443 456678889999999888876554443
No 15
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=94.07 E-value=0.71 Score=40.28 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=52.2
Q ss_pred CCCCCchHHHHHhhccCc---hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004782 29 APRFDSLPHVVHILTSKD---REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (731)
Q Consensus 29 ~~~f~~~~~~l~~L~s~~---~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~ 105 (731)
.++|||-.++=.+|.... ...-..+|.......+..|+..|..||..|-.+-. .|..-...+..++..|.
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~-------~I~~m~~~~~~l~~~l~ 75 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASD-------EISSMENDLSELRNLLS 75 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 478999999999986553 34444677788888999999999999999995544 44444444444444444
Q ss_pred HHHH
Q 004782 106 EAKR 109 (731)
Q Consensus 106 ~~k~ 109 (731)
+.+.
T Consensus 76 ~l~~ 79 (87)
T PF08700_consen 76 ELQQ 79 (87)
T ss_pred HHHH
Confidence 4433
No 16
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=3.3 Score=47.85 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=87.3
Q ss_pred CCCCCCCCCchHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHh
Q 004782 3 IFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (731)
Q Consensus 3 ~~~~~p~~~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~s 82 (731)
.+.|-|..+++==.+ +.++..++||.-..+-..=...+.|.-...|+-+.+.+..++-+++|+-|.+|-+-=.+
T Consensus 10 ~~~g~~~d~~kLcFd------k~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStn 83 (705)
T KOG2307|consen 10 LPNGFYIDESKLCFD------KTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTN 83 (705)
T ss_pred CCCCCCCCccccccC------hhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 455666655554445 66777789987655544445678888889999999999999999999999999876666
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004782 83 YSQILRLFSESAESIKELKVD-------LAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA 142 (731)
Q Consensus 83 y~~i~~~i~~Sq~~i~~lK~~-------L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~ 142 (731)
--.+-..+..-+.-+.++|+. +.++-..+..+.+++......-+.....+..+..||.|.
T Consensus 84 LVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~ 150 (705)
T KOG2307|consen 84 LVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLS 150 (705)
T ss_pred hccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555555555444 444444445455555555555555555555555555443
No 17
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=91.05 E-value=32 Score=42.34 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=117.9
Q ss_pred hcCCCCCCchHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHhHhhHHHHHHHHHHHHHHHHHH
Q 004782 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFN----KAIQNYSQILRLFSESAESIKELK 101 (731)
Q Consensus 26 ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn----~sI~sy~~i~~~i~~Sq~~i~~lK 101 (731)
.+.+++||+..-+=..+.+.+.+....+++.....+...|+-.+.+=...+- .++.+-=.+...+..-+..+..+|
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4556899998888888866544433333333333333333333322222222 222333356666666666666666
Q ss_pred HHHHHHHHHhccCc-------hHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHccc
Q 004782 102 VDLAEAKRRLGTRN-------KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (731)
Q Consensus 102 ~~L~~~k~~L~~~~-------~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~ 174 (731)
+.+...++.+..-. ..|.+|-.-.......-+.|.+=+..-..-..|+.++..++|..+.+-|....+-+.-
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~- 162 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAV- 162 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 66666666553311 1233333333344445555666677778888999999999999999999887777754
Q ss_pred CCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 004782 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (731)
Q Consensus 175 ~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~lY~Ks 212 (731)
|.+++-..+=|.+|+..++.|..++--.|...+=.++
T Consensus 163 -l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~ 199 (766)
T PF10191_consen 163 -LQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRD 199 (766)
T ss_pred -HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 7789999999999999999998888777766664443
No 18
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.82 E-value=28 Score=41.73 Aligned_cols=160 Identities=9% Similarity=0.085 Sum_probs=109.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTG--FN-KAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~--Fn-~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~ 122 (731)
..+..++.+......+++.|+.++.+--.- +| ..|+.-. +.+.---....+++..+.....+-..-++..+.|=
T Consensus 35 qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~---~~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lD 111 (773)
T KOG0412|consen 35 QIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSA---ENLLTVEGDAKELTDAIKNTCVLAETVSGKVRALD 111 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhh---hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888999999999874332 44 3333333 33333333444444444444444444567888899
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHH----HcccCCCCCCccHHHHHHH---HHhHHH
Q 004782 123 YRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM----LEREGLQTVGALQDVRSEL---TKLRGV 195 (731)
Q Consensus 123 ~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~----l~~~~L~~I~AL~dlR~~L---~~q~~~ 195 (731)
.+.-...+.++..++|-.++.+-+-+..-|..++|..|...+.+.+.+ ++...-..+.+...++..+ .+-++.
T Consensus 112 la~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~ 191 (773)
T KOG0412|consen 112 LAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765 3333334455555555444 344455
Q ss_pred HHHHHHHHHHHhH
Q 004782 196 LFYKVLEDLHAHL 208 (731)
Q Consensus 196 L~d~LieEL~~~l 208 (731)
|...+-++++..+
T Consensus 192 L~~l~~~~f~eA~ 204 (773)
T KOG0412|consen 192 LSKLFKERFTEAV 204 (773)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 19
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=83.81 E-value=4.1 Score=47.28 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=71.5
Q ss_pred hhhhHHHHHHHHHHHhhCCCCCcc-cccchHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCccccccCCccccccccc
Q 004782 593 ASIYRPVLQFTDKVASMLPQKYSQ-LGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIE 671 (731)
Q Consensus 593 ~~I~~p~l~Fi~~i~~ilp~~~~~-~~~~~l~~Fl~~Fv~~~FLp~l~~~~~~~~~~~~~~~dAfk~~~~~~~~~~~~l~ 671 (731)
..+-.-++.|=+++...+.-. + ....++.-|+.+=+-+.+|.-=.....++++++++++|||+++...... ...
T Consensus 97 ~HlI~e~~~FD~~L~~~~~y~--~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~---~~~ 171 (494)
T PF04437_consen 97 SHLIDEILSFDKELRSLYGYP--GDWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEA---DSD 171 (494)
T ss_dssp HHHHHHHHHHHHHHHHTS-----S------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HTT---SSG
T ss_pred HHHHHHHHHHHHHHHHHcCCC--CccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccC---Cch
Confidence 344556777888888776211 1 1112222233222225556666667788999999999999998654311 112
Q ss_pred cCccccchHHHHHHHHHHHHHHHHhchH--HHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 004782 672 KGRPVLQGLLAIDFLAKEVLGWAQAMPK--FAADLV-KYVQTFLERTYERCRTSYMETL 727 (731)
Q Consensus 672 ~~rPil~~~~~v~~~i~el~~~l~t~P~--y~~e~~-~lv~t~L~~y~e~C~~~y~~~v 727 (731)
..+|= .+|..|..++..+..=...+|. |+-.|+ ++=+.+|.+|+++|...|+...
T Consensus 172 ~~k~t-~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~ 229 (494)
T PF04437_consen 172 ELKPT-KSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFE 229 (494)
T ss_dssp GGG-G-GHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhcch-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34565 8999999999999999999994 667788 8888999999999999987644
No 20
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=83.70 E-value=29 Score=42.16 Aligned_cols=149 Identities=12% Similarity=0.158 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH-------HHHHHHHhHHHHHH
Q 004782 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL-------HQLWYRSVTLRHII 132 (731)
Q Consensus 60 ~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L-------~~L~~~s~~~~~~l 132 (731)
.+.+.|..+=..+-+.+-.+=..-..+...|.++...+..|-..|......|..-++++ ..|-.....++.++
T Consensus 9 ~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~ 88 (701)
T PF09763_consen 9 RLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLL 88 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Confidence 33334444433444455555555667788888888888888888888888888888877 34555666677777
Q ss_pred HHHHHHHHHHhcHHHHHHHHhccCH---------HHHHHHHHHHHHHH------cccCCCCCCccHHHHHHHHHhHHHHH
Q 004782 133 SLLDQIEGIAKVPARIEKLIAGKQY---------YAAVQLHAQSALML------EREGLQTVGALQDVRSELTKLRGVLF 197 (731)
Q Consensus 133 ~iL~~Ie~l~~vP~kie~lis~k~y---------l~A~~lL~~s~~~l------~~~~L~~I~AL~dlR~~L~~q~~~L~ 197 (731)
+-|+.|=.-..+|+.-...+.+..+ ..|...|..|+..+ ..+++..+.|+++=|..++.....+.
T Consensus 89 ~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~ 168 (701)
T PF09763_consen 89 NELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFC 168 (701)
T ss_pred HHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666788887777776665 45777777888883 33588889999999999999999999
Q ss_pred HHHHHHHHHhH
Q 004782 198 YKVLEDLHAHL 208 (731)
Q Consensus 198 d~LieEL~~~l 208 (731)
..+++.|.+..
T Consensus 169 ~r~~~~l~~~F 179 (701)
T PF09763_consen 169 KRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHH
Confidence 99988887665
No 21
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=78.03 E-value=69 Score=34.82 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHhccCchHHHHHHH
Q 004782 50 EVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL-----RLFSESAESIKELKVDLAE-AKRRLGTRNKQLHQLWY 123 (731)
Q Consensus 50 ~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~-----~~i~~Sq~~i~~lK~~L~~-~k~~L~~~~~~L~~L~~ 123 (731)
...+|++....+...++..+..+.+.++..-..+..-. ..+...++++..+++.|.. .+..|...+..|..+..
T Consensus 148 ~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~~ 227 (319)
T PF02601_consen 148 LLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLSN 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777777777666666666655533 5577777777777777755 45566666666666553
No 22
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=75.94 E-value=1.5e+02 Score=35.28 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=102.4
Q ss_pred chHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHH
Q 004782 12 EKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFS 91 (731)
Q Consensus 12 ~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~ 91 (731)
+...|++++..+....++ +.|-..|.+.+ .|++..+.++..|.++=..--|+|-+-=..-.+..+.|.
T Consensus 18 ~~~~le~~~~~~~~~~~~------e~v~~~lktg~------~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~ 85 (683)
T KOG1961|consen 18 EDISLEEVLSQLQECLDD------ELVKEALKTGD------DLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIR 85 (683)
T ss_pred hHHHHHHHHHHHHHhcch------HHHHHHHhcCC------cchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHH
Confidence 444567777777766651 22333332221 122233344444444433333333322222233334455
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHH-------HHHH-HHHHHHhcHHHHHHHHh----ccCHHH
Q 004782 92 ESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHII-------SLLD-QIEGIAKVPARIEKLIA----GKQYYA 159 (731)
Q Consensus 92 ~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l-------~iL~-~Ie~l~~vP~kie~lis----~k~yl~ 159 (731)
.+..-+.+|-..|..=...|+.-..+++.|-.+|..-.--| .-|. -|+.+.--|+.|...+. +..|.+
T Consensus 86 ~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~~ 165 (683)
T KOG1961|consen 86 ACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFLE 165 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHHH
Confidence 55555555555555555556555556655555554322111 1122 24555555555555543 458999
Q ss_pred HHHHHHHHHHHHc-ccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 004782 160 AVQLHAQSALMLE-REGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (731)
Q Consensus 160 A~~lL~~s~~~l~-~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~l 208 (731)
|.+.|..=++..+ ..+..+-.|+.|++.-|+..+..-..++-+=|-.-|
T Consensus 166 ~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI 215 (683)
T KOG1961|consen 166 ALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKI 215 (683)
T ss_pred HHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 668899999999999998887766444444333333
No 23
>PRK11637 AmiB activator; Provisional
Probab=72.36 E-value=1.2e+02 Score=34.55 Aligned_cols=146 Identities=12% Similarity=0.181 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHh
Q 004782 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (731)
Q Consensus 47 ~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (731)
.+.++.++++..+.++..++.+=.+ .+........+...|...+.++..+...+...+..|.....++.++-.+-.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~----~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQ----RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555422111 112222233344444444444444444444444444444444444433322
Q ss_pred HHHHHH-HHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHH
Q 004782 127 TLRHII-SLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFY 198 (731)
Q Consensus 127 ~~~~~l-~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d 198 (731)
+.+..+ +.+..+-.--..+ -++.+++...+-.+.+++. -+..+...+-.-|..+.+.+.+|..++..|-.
T Consensus 121 ~~~~~l~~rlra~Y~~g~~~-~l~vLl~a~~~~~~~r~~~-~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~ 191 (428)
T PRK11637 121 AQERLLAAQLDAAFRQGEHT-GLQLILSGEESQRGERILA-YFGYLNQARQETIAELKQTREELAAQKAELEE 191 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCc-HHHHHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2222233222322 4666666666544443221 22223333444466677777777766666543
No 24
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=71.81 E-value=11 Score=40.95 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred cCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHh
Q 004782 113 TRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (731)
Q Consensus 113 ~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q 192 (731)
...++|.+|......++++-++...+-=...+|+-|+.+|.+++|.+|+..+- ++.+.++ .+-+.=|+.||+.-
T Consensus 146 Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~-~f~L~dk-----fpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 146 FDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY-AFGLVDK-----FPPVPLLKSYLEDS 219 (290)
T ss_pred cCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHH-HHcCCCC-----CCCHHHHHHHHHHH
Confidence 35689999999999999999999998888999999999999999999999954 7777766 55666799999987
Q ss_pred HHHHHH
Q 004782 193 RGVLFY 198 (731)
Q Consensus 193 ~~~L~d 198 (731)
+++-..
T Consensus 220 k~~~~~ 225 (290)
T PF07899_consen 220 KKAAKR 225 (290)
T ss_pred HHHHHH
Confidence 776543
No 25
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=68.72 E-value=1.6e+02 Score=30.90 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=104.3
Q ss_pred HHHHHHHhHhhcCCCCC-CchHHHHHhh-------c-cCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-H
Q 004782 16 LREELARIEVSWVAPRF-DSLPHVVHIL-------T-SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-Q 85 (731)
Q Consensus 16 l~~~l~~I~~ew~~~~f-~~~~~~l~~L-------~-s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~-~ 85 (731)
+-+-++.|+-.++.+.. .|..+.=..| . .++....+..+-+....+..+-...+..=.+.|+..+.++- .
T Consensus 46 ~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~ 125 (223)
T cd07614 46 MLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDK 125 (223)
T ss_pred HHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778876432 2233222222 1 23457778888888888888888888888899999999996 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHhH-----HHHHHHHHHH-HHHHHhcHHHHHHHHhccCHH
Q 004782 86 ILRLFSESAESIKELKVDLAEAKRRLGTRN-KQLHQLWYRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYY 158 (731)
Q Consensus 86 i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~-~~L~~L~~~s~~-----~~~~l~iL~~-Ie~l~~vP~kie~lis~k~yl 158 (731)
-+..|+..+.++..-|=.+..||+.+..+. ++|+.-..+-.+ ...|..+++. .+.++++-+-|++-+. -|-
T Consensus 126 dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~--Yh~ 203 (223)
T cd07614 126 DLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLD--YHR 203 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH--HHH
Confidence 888999999999999999999999997654 566654443332 4456666666 6666666666665553 334
Q ss_pred HHHHHHHHHHHHH
Q 004782 159 AAVQLHAQSALML 171 (731)
Q Consensus 159 ~A~~lL~~s~~~l 171 (731)
.|.++|.+-..-|
T Consensus 204 qa~eiL~~l~~~l 216 (223)
T cd07614 204 QAVQILDELAEKL 216 (223)
T ss_pred HHHHHHHHHHHHH
Confidence 4555554444333
No 26
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=66.93 E-value=1.7e+02 Score=30.65 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLWY 123 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~-~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~-~~~~L~~L~~ 123 (731)
+....+..+=+....+..+....+..=.+.|...+.+|. .-+..|+..+.++..-|=.+..||..+.. .+++|+.-..
T Consensus 85 ~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~~ 164 (223)
T cd07613 85 NFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALE 164 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHHH
Confidence 557778888888888888888888888899999999976 56678999999999999999999999975 4788887755
Q ss_pred HHhH-----HHHHHHHHHH-HHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 004782 124 RSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (731)
Q Consensus 124 ~s~~-----~~~~l~iL~~-Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l 171 (731)
+-.+ ...|..+|+. ++.++++-+-|++-+. -|-+|.++|.+-..-+
T Consensus 165 kFees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~--Yh~qa~eiL~~l~~~l 216 (223)
T cd07613 165 KFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE--YHKQATQILQQVTVKL 216 (223)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 5544 4456668887 8888877777776653 3455555555444433
No 27
>PF12854 PPR_1: PPR repeat
Probab=66.84 E-value=9.7 Score=27.35 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHh
Q 004782 315 HVKYLQTMVECLCILGKVAAAGAIICQ 341 (731)
Q Consensus 315 s~~yi~~lve~L~~LgkL~~Al~~i~q 341 (731)
.+.| .+||.++++-|++.+|.+++.+
T Consensus 7 ~~ty-~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTY-NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHH-HHHHHHHHHCCCHHHHHHHHHh
Confidence 4445 8999999999999999998753
No 28
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=66.79 E-value=1.7e+02 Score=30.62 Aligned_cols=121 Identities=13% Similarity=0.199 Sum_probs=94.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHH
Q 004782 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLW 122 (731)
Q Consensus 45 ~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy-~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~-~~~~L~~L~ 122 (731)
++....+..+-+....+..+....+..=.+.|...+.++ ..-+..|+..+.++..-|=.+..||..+.+ .++++++-.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A~ 163 (223)
T cd07615 84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQAV 163 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 356778888888889999999999999999999999999 577889999999999999999999999987 467777765
Q ss_pred HHHhH-----HHHHHHHHHH-HHHHHhcHHHHHHHHhccCHHHHHHHHHHH
Q 004782 123 YRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQS 167 (731)
Q Consensus 123 ~~s~~-----~~~~l~iL~~-Ie~l~~vP~kie~lis~k~yl~A~~lL~~s 167 (731)
.+-.+ ...|..+|+. +|.++++-.-|++-+. -+-.|.++|.+-
T Consensus 164 ~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~--Yh~~a~eiL~~l 212 (223)
T cd07615 164 EKFEESKELAERSMFNFLENDVEQVSQLSVLIEAALD--YHRQSTEILEDL 212 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 55443 5678888887 8888877777776653 223444444433
No 29
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.06 E-value=2.1e+02 Score=33.23 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCchHHHHHHHH
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI---KELKVDLAEAKRRLGTRNKQLHQLWYR 124 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i---~~lK~~L~~~k~~L~~~~~~L~~L~~~ 124 (731)
.....+|+.....+.+.+.. +..++..++.+++.|+.+...++...... ...=..+..+-+.+.+-.+++. .-..
T Consensus 280 ~~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~-~~~~ 357 (503)
T KOG2273|consen 280 KEKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT-AEKD 357 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-hhhh
Confidence 44456667777777777777 77788999999999999999999988854 3333334444444433322221 1122
Q ss_pred Hh----HHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHH
Q 004782 125 SV----TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKV 200 (731)
Q Consensus 125 s~----~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~L 200 (731)
+. .+++.|+. ++.++.+.+.-.. ....+..|...+...-..++....+...-....+..+...+-.....-
T Consensus 358 ~~~~~~~l~~~i~~---~~~~k~~~~~r~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~ 432 (503)
T KOG2273|consen 358 SKKLAEQLREYIRY---LESVKSLFEQRSK--ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEK 432 (503)
T ss_pred HHHhHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHH
Confidence 22 22333333 3333333333222 333444555555444444443211111101333334444444445566
Q ss_pred HHHHHHhHhcCCCc
Q 004782 201 LEDLHAHLYNRGEY 214 (731)
Q Consensus 201 ieEL~~~lY~Ks~~ 214 (731)
+.++.+.++.+...
T Consensus 433 ~~~~~~~~~~~~~~ 446 (503)
T KOG2273|consen 433 VNELEELLALKELE 446 (503)
T ss_pred HHHHHHHHHhhhHH
Confidence 77777777776643
No 30
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=65.04 E-value=70 Score=38.40 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004782 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGI 141 (731)
Q Consensus 62 ~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l 141 (731)
...|+..|-+-|.+.-.+--+-..+.+.-..--+.|+.++.+...-+..-..+++-+.+++-..+.| --+--+|..|
T Consensus 37 rEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~~---Yg~aaqVKyL 113 (863)
T KOG2033|consen 37 REELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEHL---YGTAAQVKYL 113 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhHH---HHHHHHHHHH
Confidence 4456677777777776655554444444444444555555555444433345566677766333333 3345678889
Q ss_pred HhcHHHHHHHHhccCHHHHHHHHHHHHH
Q 004782 142 AKVPARIEKLIAGKQYYAAVQLHAQSAL 169 (731)
Q Consensus 142 ~~vP~kie~lis~k~yl~A~~lL~~s~~ 169 (731)
...|++|=..+.+.+|++|+.++..+.-
T Consensus 114 v~~PE~IWg~lD~s~fl~At~ly~~~~H 141 (863)
T KOG2033|consen 114 VSSPELIWGHLDSSEFLDATVLYCMVEH 141 (863)
T ss_pred HhCHHHhhccccccchHHHHHHHHHHHH
Confidence 9999999999999999999998865543
No 31
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=64.46 E-value=2e+02 Score=33.73 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhH-------HHHHHHHHHH-HHHHHhcHHHHHHHHhcc---CH
Q 004782 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT-------LRHIISLLDQ-IEGIAKVPARIEKLIAGK---QY 157 (731)
Q Consensus 89 ~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~-------~~~~l~iL~~-Ie~l~~vP~kie~lis~k---~y 157 (731)
.|.+|.+.+..|.+.|..=+..|+.-+.++..|-.+|.+ -+.+.+.|.. |+.+.=-|+-|...+.+. +|
T Consensus 22 ~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v~e~~ 101 (508)
T PF04129_consen 22 QIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEGPVNEQY 101 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCCCHHH
Confidence 344455555555555555555555555555554444443 3334444444 455554455555444432 34
Q ss_pred HH-HHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 004782 158 YA-AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (731)
Q Consensus 158 l~-A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~lY 209 (731)
.. +.+++.+-..........+..|.+|++..|+..+..-.+.+-+=|-..|+
T Consensus 102 ~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 102 IEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 46777766666665678999999999999988887765555554444444
No 32
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.77 E-value=40 Score=34.37 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhH
Q 004782 1 MDIFDGLPISPEKAYLREELARIE 24 (731)
Q Consensus 1 ~~~~~~~p~~~~~~~l~~~l~~I~ 24 (731)
|.+|-+.||.||...|.+--..++
T Consensus 18 mevfk~vPQ~PHF~pL~~~~e~~R 41 (190)
T PF05266_consen 18 MEVFKKVPQSPHFSPLQEFKEELR 41 (190)
T ss_pred HHHHHcCCCCCCChhhhcCcHHhh
Confidence 456889999999999875544443
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.75 E-value=1e+02 Score=33.90 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 004782 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFS-ESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (731)
Q Consensus 47 ~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~-~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s 125 (731)
...++..|.+....++..+..++. .|+....-+..-..+...+. .-++.+..+|..|.+.+..|..++.+|.+|-.+-
T Consensus 161 L~~D~~~L~~~~~~l~~~~~~l~~-~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 161 LQEDYAKLDKQLEQLDELLPKLRE-RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444444444333333 33555555665555555555 2355566666666666666666666666555444
Q ss_pred hHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHh
Q 004782 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (731)
Q Consensus 126 ~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q 192 (731)
...+.- |+.+-.++. +...-|.++-+..+.-.-|+..-+..|+..+...
T Consensus 240 ~~l~~~----------------i~~~~~~k~--~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 240 EELEEK----------------IEELEEQKQ--ELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHH----------------HHHHHHHHH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 443333 222222221 2222333444444444555555566666665543
No 34
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.23 E-value=4e+02 Score=32.32 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=96.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HhH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNK---AIQ----NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~---sI~----sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L 118 (731)
-.+...++|-+....++..|..-|-..|.+.-. .+. .-......+++-|+.|+.||..+.+-.+.+..+.-.|
T Consensus 72 ~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl 151 (797)
T KOG2211|consen 72 RIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVL 151 (797)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445556667666677777777665555544322 122 2345666777888888888888888888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHh--ccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHH
Q 004782 119 HQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA--GKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELT 190 (731)
Q Consensus 119 ~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis--~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~ 190 (731)
.+|-...-..++...+|+-=..|+ .+.+ .+....|.+.+.+=-.+++..+|.+|.-+..=+.++.
T Consensus 152 ~rLhva~~lLrrsgr~l~LskkL~-------~l~~~~~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~ 218 (797)
T KOG2211|consen 152 TRLHVAENLLRRSGRALELSKKLA-------SLNSSMVVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVS 218 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhhccCCHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 888888877888777775555544 2221 2346788888888889999999999988877666654
No 35
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=58.06 E-value=1.5e+02 Score=35.88 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=20.0
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 004782 182 LQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (731)
Q Consensus 182 L~dlR~~L~~q~~~L~d~LieEL~~~lY~Ks 212 (731)
|..++.++......-...-+.+..+.++.|.
T Consensus 492 l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 492 LKEFREKLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4467777777655555555666667777764
No 36
>PRK11637 AmiB activator; Provisional
Probab=56.84 E-value=3.2e+02 Score=31.06 Aligned_cols=52 Identities=12% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHh
Q 004782 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (731)
Q Consensus 75 ~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (731)
.....-.....+...|...+.++..+.+.+...+..|...++.|.++-....
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677777777777777777777777777777777755444333
No 37
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=56.43 E-value=2.6e+02 Score=29.41 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=92.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s 125 (731)
.....+..|-+....+...++.....-.-.|--.|.-|-.++.+|..+=+.=..+-.....|...|..++..+.+|-..+
T Consensus 77 ~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~ 156 (234)
T cd07665 77 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWAN 156 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667778888888888888888888888999999999999999999999999999999999999999999988883322
Q ss_pred hHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 004782 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (731)
Q Consensus 126 ~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (731)
.-.++-++-.+|.++.. +++. .+++|-+.++++..=+...+.
T Consensus 157 -~~dK~~~a~~Ev~e~e~---k~~~--a~~~fe~is~~ik~El~rFe~ 198 (234)
T cd07665 157 -KPDKLQQAKDEIAEWES---RVTQ--YERDFERISATVRKEVIRFEK 198 (234)
T ss_pred -CchHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555544443 3332 344788888887777666655
No 38
>PTZ00464 SNF-7-like protein; Provisional
Probab=55.97 E-value=2.5e+02 Score=29.07 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 004782 131 IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (731)
Q Consensus 131 ~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~l 208 (731)
+-++..+...|.++-..||..-.+.....|...=..+++.+++ .+ +|.-+.+|..++..+-.. .+|+++.|
T Consensus 77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k-~i-~id~Vd~l~Dei~E~~e~-----~~EI~e~L 147 (211)
T PTZ00464 77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFK-KL-NVDKVEDLQDELADLYED-----TQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 3345556677777777888888888888999999999999998 66 788888888888765443 45665555
No 39
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.67 E-value=2.5e+02 Score=29.63 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhH
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (731)
..++..+....+.+...+++++.. +++............+...+.++..+|..+...+..+...+..+.++-..-..
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILES---DSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555541 22225667778888888889999999999999888888888888777766666
Q ss_pred HHHHHH
Q 004782 128 LRHIIS 133 (731)
Q Consensus 128 ~~~~l~ 133 (731)
.+..+.
T Consensus 103 ~~~~l~ 108 (302)
T PF10186_consen 103 RRSRLS 108 (302)
T ss_pred HHHHHH
Confidence 555555
No 40
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=55.53 E-value=2.5e+02 Score=28.75 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s 125 (731)
+....+..|-+....+...+...+......|...|.-|...+.++.+.=.+=..+-..+..+...|..++..+.+|-..+
T Consensus 79 ~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 79 SLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 35666777888888888888888999999999999999999999998888777888888899999999888888877663
Q ss_pred h-HHHHHHHHHHHHHHH
Q 004782 126 V-TLRHIISLLDQIEGI 141 (731)
Q Consensus 126 ~-~~~~~l~iL~~Ie~l 141 (731)
. ..+++-+...+|+++
T Consensus 159 ~~~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEA 175 (236)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 2 334444444444433
No 41
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=55.34 E-value=2.4e+02 Score=29.64 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCchHHHHHHHHHhHH
Q 004782 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRR-------------LGTRNKQLHQLWYRSVTL 128 (731)
Q Consensus 62 ~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~-------------L~~~~~~L~~L~~~s~~~ 128 (731)
...|..+.-+|-.+|-.- ..|+..+..+++++++|.++|..+...-.. |..-....++|-.+...|
T Consensus 71 ~~~Lg~~M~~~g~~~g~~-S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 71 PELLGQYMIDAGNEFGPG-TAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--HHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHH--HHHHHHHHHH
Q 004782 129 RHIISLLDQ--IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDL 204 (731)
Q Consensus 129 ~~~l~iL~~--Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~--~L~d~LieEL 204 (731)
+..-.-+.. -++-+.++ .-|--.++-+|.++.+.-...+.-+.. .++.-+++|+.-+..|-. .-...++++|
T Consensus 150 D~~K~r~~kAk~~~~~~~~-e~elr~ae~efees~E~a~~~m~~i~~---~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 150 DAAKTRLKKAKVAEARAAA-EQELRITQSEFDRQAEITRLLLEGISS---THAHHLRCLNDFVEAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHhcCCcchhhcch-HHHHHHHHHHHHHHHHHHHHHHHhhhh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhH
Q 004782 205 HAHL 208 (731)
Q Consensus 205 ~~~l 208 (731)
++.|
T Consensus 226 ~~~l 229 (229)
T cd07616 226 QKQL 229 (229)
T ss_pred HhhC
No 42
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=53.61 E-value=1.5e+02 Score=31.08 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=39.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRL 111 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy-~~i~~~i~~Sq~~i~~lK~~L~~~k~~L 111 (731)
+....+..+-+....|..+-......=.+.|+..+.++ ..=+..|+..+.++..-|=.+..+|+.+
T Consensus 85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~ 151 (223)
T cd07592 85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQ 151 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666666666666666555566666666665 3444556666666666666666555544
No 43
>PRK10869 recombination and repair protein; Provisional
Probab=52.80 E-value=4.6e+02 Score=31.11 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=5.7
Q ss_pred HHHHHHHHHhHHH
Q 004782 183 QDVRSELTKLRGV 195 (731)
Q Consensus 183 ~dlR~~L~~q~~~ 195 (731)
..+...|...++.
T Consensus 358 ~~~A~~LS~~R~~ 370 (553)
T PRK10869 358 LETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 44
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=51.46 E-value=2.4e+02 Score=31.83 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 004782 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (731)
Q Consensus 138 Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l 171 (731)
++.+.++=..|+.++.+..+-.+..-+++++.-|
T Consensus 336 ~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls~l 369 (370)
T PLN03094 336 LKHIESISSDISGFTGDEATRRNLKQLIQSLSRL 369 (370)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc
Confidence 4666777889999999999999999999887643
No 45
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=50.51 E-value=2.9e+02 Score=28.17 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHH
Q 004782 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (731)
Q Consensus 52 ~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~ 96 (731)
..|+.....+.+.+..+|. |.++...+++.|+.....++.+...
T Consensus 34 ~~le~~Lk~l~~~~~~l~~-~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 34 DKLEEQLKKLYKSLERLVK-RRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3444444445444444444 4588888888888888887777655
No 46
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=50.26 E-value=3.2e+02 Score=28.56 Aligned_cols=107 Identities=10% Similarity=0.147 Sum_probs=68.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~-i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~ 124 (731)
+....+...-+....+..+=...+..=.+.|...+.++-. -+..|+..+.++..-|=.+..||..+..-.++|+.--..
T Consensus 90 ~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~k 169 (220)
T cd07617 90 PYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQTE 169 (220)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4455666666666666666666666666889999998877 667888999999988888888888886654555543322
Q ss_pred HhHHHH-----HHHHHHH-HHHHHhcHHHHHHHH
Q 004782 125 SVTLRH-----IISLLDQ-IEGIAKVPARIEKLI 152 (731)
Q Consensus 125 s~~~~~-----~l~iL~~-Ie~l~~vP~kie~li 152 (731)
-.+..+ |-.+++. +|.|+++-+-|++-+
T Consensus 170 f~~~~E~a~~~M~~il~~~~e~l~~L~~lv~AQl 203 (220)
T cd07617 170 FDRQAEVTRLLLEGISSTHVNHLRCLHEFVEAQA 203 (220)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 222222 3444444 555555555555444
No 47
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=49.23 E-value=4.4e+02 Score=31.29 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHH-HHHHHHHhcHHHHHHHHhccCHHHH
Q 004782 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-DQIEGIAKVPARIEKLIAGKQYYAA 160 (731)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL-~~Ie~l~~vP~kie~lis~k~yl~A 160 (731)
....++..=.+.+..|..+|+...++|+.|..++... ...+..| ++++.+-.-=++.+.++.+++|.+|
T Consensus 123 ~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~----------G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A 192 (560)
T PF06160_consen 123 ELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY----------GPAIEELEKQLENIEEEFSEFEELTENGDYLEA 192 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------chhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3345555556666666666666666666655555443 3333333 3356666667899999999999999
Q ss_pred HHHHHHHHHHHc
Q 004782 161 VQLHAQSALMLE 172 (731)
Q Consensus 161 ~~lL~~s~~~l~ 172 (731)
-++|...-..+.
T Consensus 193 ~eil~~l~~~~~ 204 (560)
T PF06160_consen 193 REILEKLKEETD 204 (560)
T ss_pred HHHHHHHHHHHH
Confidence 999887655553
No 48
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=48.02 E-value=1.7e+02 Score=35.45 Aligned_cols=101 Identities=15% Similarity=0.303 Sum_probs=60.2
Q ss_pred CCCCCchHHHHHHHHHh-----HhhcCC-CCCCc-------------------------hHHHHHhhc----cCchhhHH
Q 004782 7 LPISPEKAYLREELARI-----EVSWVA-PRFDS-------------------------LPHVVHILT----SKDREGEV 51 (731)
Q Consensus 7 ~p~~~~~~~l~~~l~~I-----~~ew~~-~~f~~-------------------------~~~~l~~L~----s~~~e~~~ 51 (731)
+|.+||.+++.+++..+ |.+|-. =+-+. +-.++.+|+ ..+.|.++
T Consensus 93 lP~~~d~~~l~~lf~~lF~~~~D~~Wl~ai~~~~w~~L~~lL~~~~~~~~~~~~~~~~~ll~Ai~~Ls~~I~a~glepel 172 (643)
T PF10136_consen 93 LPAPPDPNDLSDLFNLLFPRPSDAEWLEAIPDETWLRLFELLGAEEEEDQDASPHWRQELLDAIEMLSYRIAAEGLEPEL 172 (643)
T ss_pred CCCCCChhHHHHHHHHHCCCCCcHHHHHhCCHHHHHHHHHHhCcCccccchhHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 79999999999999776 444542 01111 122233332 22333333
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHhHHHHHHHh-HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004782 52 QIL-------KDQNDIIEEVVDEVVHAYHTGFNKAI-QNYSQILRLFSESAESIKELKVDLAEA 107 (731)
Q Consensus 52 ~~l-------~~~~~~l~~~L~~vV~~h~q~Fn~sI-~sy~~i~~~i~~Sq~~i~~lK~~L~~~ 107 (731)
-+. +.-+..++..+..++++|.++-.... ..+..+...+.+|++.|..+++++...
T Consensus 173 ~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~ 236 (643)
T PF10136_consen 173 RRRMPELEERDSPFVALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKY 236 (643)
T ss_pred HhhCCCCcccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 222 22245557777777777766654311 167777778888888888888877765
No 49
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.64 E-value=5.4e+02 Score=30.39 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh----HHHH----HHHhH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAY----HTGF----NKAIQ---NYSQILRLFSESAESIKELKVDLAEAKRRLGTR-- 114 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h----~q~F----n~sI~---sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~-- 114 (731)
+..+..|+....+++.+++.|-++- .+.| +..|. .|-.++.+|+--..-+..+......-......+
T Consensus 300 ~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~r 379 (593)
T KOG2460|consen 300 DQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKLR 379 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCcccccccC
Confidence 4556778888888877777765431 1221 11122 345555555555444444444444433332222
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHH------HhcHHH----------------HHHHHhccCHHHHHHHHHHHHHHHc
Q 004782 115 NKQLHQLWYRSVTLRHIISLLDQIEGI------AKVPAR----------------IEKLIAGKQYYAAVQLHAQSALMLE 172 (731)
Q Consensus 115 ~~~L~~L~~~s~~~~~~l~iL~~Ie~l------~~vP~k----------------ie~lis~k~yl~A~~lL~~s~~~l~ 172 (731)
-.+|.+|+ +-+|+.|..|-+| +....+ -..|.+.++|-+|+-|.+++..-++
T Consensus 380 pqdl~RLY------d~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylq 453 (593)
T KOG2460|consen 380 PQDLERLY------DSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQ 453 (593)
T ss_pred HHHHHHHH------HHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 3444444333322 111122 3467889999999999999999887
Q ss_pred c
Q 004782 173 R 173 (731)
Q Consensus 173 ~ 173 (731)
.
T Consensus 454 e 454 (593)
T KOG2460|consen 454 E 454 (593)
T ss_pred H
Confidence 6
No 50
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.00 E-value=3.7e+02 Score=28.46 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHH----hHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc----cCchHHHHHHH
Q 004782 61 IEEVVDEVVHAYHTGFNKA----IQNYSQILRLFSESAESIKE---------LKVDLAEAKRRLG----TRNKQLHQLWY 123 (731)
Q Consensus 61 l~~~L~~vV~~h~q~Fn~s----I~sy~~i~~~i~~Sq~~i~~---------lK~~L~~~k~~L~----~~~~~L~~L~~ 123 (731)
+..+|..+..+|-..|... -..|+..+..+++++++|.+ .++-+.--+..|. .=...-++|-.
T Consensus 79 l~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~ 158 (242)
T cd07600 79 LNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVED 158 (242)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHH---HHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHH--HHHH
Q 004782 124 RSVTLRHIISLLDQI---EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFY 198 (731)
Q Consensus 124 ~s~~~~~~l~iL~~I---e~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~--~L~d 198 (731)
++..|+-+-.-+... +.--...+.+| -++.+|..|++.-...+.-+ +.+..-++.|+.-+..|.. .-.-
T Consensus 159 ~RLd~D~~K~~~~ka~~~~k~~~~~~e~E--~aEdef~~a~E~a~~~M~~i----l~~~e~i~~L~~fv~AQl~Yh~~~~ 232 (242)
T cd07600 159 KRLQLDTARAELKSAEPAEKQEAARVEVE--TAEDEFVSATEEAVELMKEV----LDNPEPLQLLKELVKAQLAYHKTAA 232 (242)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHH--HHHHHHHHhHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH
Q 004782 199 KVLEDLHAHL 208 (731)
Q Consensus 199 ~LieEL~~~l 208 (731)
.++++|...+
T Consensus 233 e~L~~l~~~~ 242 (242)
T cd07600 233 ELLEELLSVL 242 (242)
T ss_pred HHHHHHhhcC
No 51
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=45.60 E-value=2.2e+02 Score=30.16 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHH-H
Q 004782 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-I 138 (731)
Q Consensus 60 ~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~-I 138 (731)
..-..|+++|+.++-+|...=.-|+.-...|+... ..|-...+.+.+||.+-.+.+.+-..||+ +
T Consensus 71 l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWD--------------r~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L 136 (254)
T KOG2196|consen 71 LTYKTLEELINKWSLELEEQERVFLQQATQVNAWD--------------RTLIENGEKISGLYNEVVKVKLDQKRLDQEL 136 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHhCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34578999999999999998888888777776664 34555678889999999999999988886 8
Q ss_pred HHHHhcHHHHHHHHh
Q 004782 139 EGIAKVPARIEKLIA 153 (731)
Q Consensus 139 e~l~~vP~kie~lis 153 (731)
+.|....++||.++.
T Consensus 137 ~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 137 EFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888764
No 52
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.03 E-value=6e+02 Score=30.20 Aligned_cols=125 Identities=13% Similarity=0.188 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHH
Q 004782 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (731)
Q Consensus 52 ~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~ 131 (731)
..+++....+.+....+ -+.++..-..|+.|...+.+..+++..+.+...+.+..|..-+++=++-...-..++..
T Consensus 347 ~~l~~~l~~l~~~~~~~----~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~ 422 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDL----EERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQK 422 (560)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333 24555566677788888877777777777777777766665555444444444444433
Q ss_pred HHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccH
Q 004782 132 ISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (731)
Q Consensus 132 l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~ 183 (731)
|.-..--=+=..+|..=+.|+. .|..|.+-+.+-...|+...+ ++..++
T Consensus 423 l~~ikR~lek~nLPGlp~~y~~--~~~~~~~~i~~l~~~L~~~pi-nm~~v~ 471 (560)
T PF06160_consen 423 LREIKRRLEKSNLPGLPEDYLD--YFFDVSDEIEELSDELNQVPI-NMDEVN 471 (560)
T ss_pred HHHHHHHHHHcCCCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCc-CHHHHH
Confidence 3333222122234444444544 677888889988888887443 344433
No 53
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.57 E-value=1.4e+02 Score=33.08 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRR 110 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~ 110 (731)
+.+.+.++|++++...-..+.++-. .-......|+..+.++++++++|..|+..
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~-----------lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSK-----------LQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455666666666555555444321 12344556666677777777777777665
No 54
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.89 E-value=2.2e+02 Score=26.22 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHH-----H-----HHHHHHhcHHHH
Q 004782 82 NYSQILRLFSESAESIKELK---VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-----D-----QIEGIAKVPARI 148 (731)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lK---~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL-----~-----~Ie~l~~vP~ki 148 (731)
.|+++.....++|.++..+- ..+.-+++..+-...++..+-.+..-|.-|-..+ . .-+++++..++|
T Consensus 4 af~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~I 83 (114)
T KOG3501|consen 4 AFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKI 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHH
Confidence 46788888888888887655 4555666666666777776666666666554433 2 235677777888
Q ss_pred HHHHhccCHHH
Q 004782 149 EKLIAGKQYYA 159 (731)
Q Consensus 149 e~lis~k~yl~ 159 (731)
+++=.+|.|++
T Consensus 84 eaLqkkK~YlE 94 (114)
T KOG3501|consen 84 EALQKKKTYLE 94 (114)
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 55
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=42.90 E-value=4.4e+02 Score=28.03 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=42.3
Q ss_pred HHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHH
Q 004782 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (731)
Q Consensus 68 vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~ 122 (731)
.++.....+...|.+...+.+.+.+.++.+..+-.++...-..|..++++|.++-
T Consensus 182 ~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l 236 (291)
T TIGR00996 182 ALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDAL 236 (291)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4455667888888888888888888888888888888887777777777765543
No 56
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.71 E-value=4.2e+02 Score=27.76 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=29.8
Q ss_pred hHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHH
Q 004782 80 IQNYSQILRLFSESAESIK-------ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL 135 (731)
Q Consensus 80 I~sy~~i~~~i~~Sq~~i~-------~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL 135 (731)
|.+|..+-....+++++.. .+.+.|.+-...+..-++.|++|-.+.....+|++.|
T Consensus 127 v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 127 VPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666555555555443 3334444444444444555566666666666665555
No 57
>PRK14140 heat shock protein GrpE; Provisional
Probab=42.60 E-value=1.1e+02 Score=31.29 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 004782 128 LRHIISLLDQIEGIAK 143 (731)
Q Consensus 128 ~~~~l~iL~~Ie~l~~ 143 (731)
.+.+|.++|.++...+
T Consensus 90 ~~~LLpvlDnLerAl~ 105 (191)
T PRK14140 90 ASDLLPALDNFERALQ 105 (191)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3555555555555443
No 58
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=42.42 E-value=4.3e+02 Score=27.78 Aligned_cols=157 Identities=9% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhcCCCCCCchHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 004782 25 VSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (731)
Q Consensus 25 ~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L 104 (731)
++|. .+....+..|+...+.+-+++..+|..| .+...+++-|+..+..++.+... ..|
T Consensus 21 D~~F----------------~~~k~yi~~Le~~Lk~l~k~~~~lv~~r-kela~~~~efa~s~~~L~~~E~~-----~~l 78 (234)
T cd07664 21 DAWF----------------EEKQQQFENLDQQLRKLHASVESLVCHR-KELSANTAAFAKSAAMLGNSEDH-----TAL 78 (234)
T ss_pred cHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCccc-----chH
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCC-------
Q 004782 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQ------- 177 (731)
Q Consensus 105 ~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~------- 177 (731)
..+=..|+...+.+++++.+... .+++.+-+-|++-..+-.-|...+.++. .|..-..++...+.+....
T Consensus 79 s~~l~~laev~~ki~~~~~~qa~-~d~~~l~e~L~eYiR~i~svK~~f~~R~--k~~~~~~~a~~~L~kkr~~~~Kl~~~ 155 (234)
T cd07664 79 SRALSQLAEVEEKIDQLHQDQAF-ADFYLFSELLGDYIRLIAAVKGVFDQRM--KCWQKWQDAQVTLQKKREAEAKLQYA 155 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred -----------CCCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 004782 178 -----------TVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (731)
Q Consensus 178 -----------~I~AL~dlR~~L~~q~~~L~d~LieEL~~ 206 (731)
.|..+..=..+....-..+-+.+-.||.+
T Consensus 156 ~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~r 195 (234)
T cd07664 156 NKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGR 195 (234)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.35 E-value=3.6e+02 Score=26.82 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=6.8
Q ss_pred HHhccCchHHHHHHHHHh
Q 004782 109 RRLGTRNKQLHQLWYRSV 126 (731)
Q Consensus 109 ~~L~~~~~~L~~L~~~s~ 126 (731)
..+...+..+.+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQ 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444433333
No 60
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.34 E-value=2.1e+02 Score=30.89 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHH
Q 004782 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129 (731)
Q Consensus 86 i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~ 129 (731)
.+-.+.++|..|++||+-++..|..|..+...+++.+.+---+.
T Consensus 115 AQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 115 AQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhH
Confidence 45678999999999999999999999999888887776544333
No 61
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.10 E-value=3.7e+02 Score=30.64 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY--SQILRLFSESAESIKELKVDLAEA 107 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy--~~i~~~i~~Sq~~i~~lK~~L~~~ 107 (731)
.....+|++....+...++..+..+.+.+..--..+ ..-...+...++++..+.++|..+
T Consensus 263 ~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a 324 (438)
T PRK00286 263 AELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRA 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777778888887777776655444 223344555666666666666554
No 62
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=39.55 E-value=7.2e+02 Score=31.19 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=69.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 004782 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (731)
Q Consensus 45 ~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~ 124 (731)
.+|.+.+.++-+..+.....+++--.++ ++||..+........+..+++++|..-+..+...++ ...||-.
T Consensus 177 ~GrnP~iNq~l~klkq~~~ei~e~eke~--------a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~-~v~l~~~ 247 (984)
T COG4717 177 SGRNPQINQLLEKLKQERNEIDEAEKEY--------ATYHKLLESRRAEHARLAELRSELRADRDHIRALRD-AVELWPR 247 (984)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHH
Confidence 3667777666666665555555554444 789999999999999999999999999888877655 4579999
Q ss_pred HhHHHHHHHHHHH-HHHHHhcHH
Q 004782 125 SVTLRHIISLLDQ-IEGIAKVPA 146 (731)
Q Consensus 125 s~~~~~~l~iL~~-Ie~l~~vP~ 146 (731)
.++.+.+-+-|+- -++.-..|.
T Consensus 248 lqE~k~Leqel~~~~~e~~~fP~ 270 (984)
T COG4717 248 LQEWKQLEQELTRRREELATFPR 270 (984)
T ss_pred HHHHHHHHHHhccchhhhccCCc
Confidence 9998877777764 234444443
No 63
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=38.98 E-value=4.2e+02 Score=30.98 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHH
Q 004782 13 KAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE 92 (731)
Q Consensus 13 ~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~ 92 (731)
|......|..|..+-. -.-+..++++|....+ .-...|.....++..++.++-+ +..|-+.+..+-..+...
T Consensus 44 W~~r~~~L~~i~~QL~---s~~v~~~~~iL~~~~s-~~~~~f~~~~~~l~~~~~ea~d--~~~fL~~l~~~~~~l~~~-- 115 (579)
T PF08385_consen 44 WRSREENLSSIYEQLK---SPEVQKILEILEKAKS-SYTKSFKNLTRELKEALNEAKD--NNKFLKPLEPPFELLEAS-- 115 (579)
T ss_pred HHHHHHHHHHHHHHHc---chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccC--
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHh---HHHHHHHHHHHHHHHHhcHHHHHHHHhcc-----CHHHHHHHH
Q 004782 93 SAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV---TLRHIISLLDQIEGIAKVPARIEKLIAGK-----QYYAAVQLH 164 (731)
Q Consensus 93 Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~---~~~~~l~iL~~Ie~l~~vP~kie~lis~k-----~yl~A~~lL 164 (731)
++.+....|..--..|+.+|.-+. .-..|..+|+.|- .++=.++..+|... .|.++.+.+
T Consensus 116 ----------~~~~i~~~i~~l~~~l~~iw~~S~~y~~~~R~~~Ll~~is--n~ii~~~~~~l~~~~l~~~~~~~~~~~l 183 (579)
T PF08385_consen 116 ----------DLSEIQESIPPLFHHLRLIWRISRYYYPPERMTSLLEKIS--NQIIQKCQKYLDPSDLFSGDYDEFIKKL 183 (579)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH--HHHHHHHHHHhCchhhhcCCHHHHHHHH
Q ss_pred HHHHHHHcc
Q 004782 165 AQSALMLER 173 (731)
Q Consensus 165 ~~s~~~l~~ 173 (731)
..+..+++.
T Consensus 184 ~~~~~~~~~ 192 (579)
T PF08385_consen 184 NECIDILES 192 (579)
T ss_pred HHHHHHHHH
No 64
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=38.33 E-value=2.9e+02 Score=26.59 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=51.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHh----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHT---GFNKAI----QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q---~Fn~sI----~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L 118 (731)
+.+.+++.++++..+.+..+++.-..|.. .....| ..|.+.+..++.....|..-++++...|..|..-+..|
T Consensus 23 pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L 102 (142)
T PF04048_consen 23 PVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLL 102 (142)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999988887777776666555522 222222 34666777778888888888888888888777766665
No 65
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=38.31 E-value=4.7e+02 Score=27.05 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH--HhHH
Q 004782 51 VQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR--SVTL 128 (731)
Q Consensus 51 ~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~--s~~~ 128 (731)
+..|+...+.+-+.++.+|..| .+...+++.|+.-+..++.+.. ...|..+=..++..-..+.++..+ ....
T Consensus 21 i~~Le~~Lk~l~~~~e~lv~~r-~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~~d~ 94 (224)
T cd07623 21 IENLDQQLRKLHASVESLVNHR-KELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQADTDF 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-HHHHHhcHHHHHHHHhcc-CHHHHHHHHHHHHHHHcccCCCC-----------CCccHHHHHHHHHhHHH
Q 004782 129 RHIISLLDQ-IEGIAKVPARIEKLIAGK-QYYAAVQLHAQSALMLEREGLQT-----------VGALQDVRSELTKLRGV 195 (731)
Q Consensus 129 ~~~l~iL~~-Ie~l~~vP~kie~lis~k-~yl~A~~lL~~s~~~l~~~~L~~-----------I~AL~dlR~~L~~q~~~ 195 (731)
..+.+.|+. +.-+.+||+-+.....-- +|..|..-|...-..+.+....+ |.....--......-..
T Consensus 95 ~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~ 174 (224)
T cd07623 95 YILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEE 174 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 004782 196 LFYKVLEDLHA 206 (731)
Q Consensus 196 L~d~LieEL~~ 206 (731)
+-+.+-.||.+
T Consensus 175 is~~~k~El~r 185 (224)
T cd07623 175 ISKTIKKEIER 185 (224)
T ss_pred HHHHHHHHHHH
No 66
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.51 E-value=3.6e+02 Score=32.60 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH-------HhHHHHH
Q 004782 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR-------SVTLRHI 131 (731)
Q Consensus 59 ~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~-------s~~~~~~ 131 (731)
+++...|+.+=-++-|..-.|=..-..+++.|..+-..|..+-+.|..+...|+.-|+++...-.+ +..-..+
T Consensus 196 E~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL 275 (867)
T KOG2148|consen 196 ERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKL 275 (867)
T ss_pred HHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHH
Confidence 445555666655666666666666778888888888888888888888888888777776553332 2223333
Q ss_pred HHHHH-HHHHHHhcHHHHHHHHhccCHHHH------HHHHHHHHHHHcccCC----CCCCccHHHHHHHHHhHHHHHHHH
Q 004782 132 ISLLD-QIEGIAKVPARIEKLIAGKQYYAA------VQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKV 200 (731)
Q Consensus 132 l~iL~-~Ie~l~~vP~kie~lis~k~yl~A------~~lL~~s~~~l~~~~L----~~I~AL~dlR~~L~~q~~~L~d~L 200 (731)
++-|+ -|+.|. ||..=-+-+.+..|..| ..-..+|+.-+..++| ....|.+|=|++|+..+.++-+.+
T Consensus 276 ~eEl~kvin~L~-vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 276 IEELDKVINRLD-VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHhcc-CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 355555 88877777777777555 3334445555544444 457889999999999999888877
Q ss_pred HHHHHHhH
Q 004782 201 LEDLHAHL 208 (731)
Q Consensus 201 ieEL~~~l 208 (731)
.+=|.+..
T Consensus 355 ssfLnnlF 362 (867)
T KOG2148|consen 355 SSFLNNLF 362 (867)
T ss_pred HHHHHHHH
Confidence 77665543
No 67
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=36.86 E-value=5.1e+02 Score=27.05 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHH---HHHHHHhHHHHHHHHHHHHHHh
Q 004782 148 IEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLHAH 207 (731)
Q Consensus 148 ie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dl---R~~L~~q~~~L~d~LieEL~~~ 207 (731)
-|--.++.+|.++.+.....+.-+-..+-..|..|..| ......+-..+...|..+|...
T Consensus 157 eEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~~ 219 (223)
T cd07592 157 EELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQER 219 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888888877776655456666666665 3333344444445556666543
No 68
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.04 E-value=5e+02 Score=26.37 Aligned_cols=72 Identities=4% Similarity=0.080 Sum_probs=53.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQ 117 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~ 117 (731)
+.+..+..+-...+.+...++...+.+...|...|.-|......|...-..=.+.......+..-|..++.+
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777788888888888888888999999888888888776665555666666666666555544
No 69
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=34.49 E-value=5.8e+02 Score=26.98 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLG 112 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~-~i~~~i~~Sq~~i~~lK~~L~~~k~~L~ 112 (731)
+....+...-+....+..........=.+.|+..+.++- .-+..|+..+.++...|=.+..||..+.
T Consensus 78 ~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ 145 (244)
T cd07595 78 LLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYN 145 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344455555555556655555555556677888888777 3557788888888888888888888774
No 70
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.47 E-value=6.8e+02 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 004782 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (731)
Q Consensus 63 ~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~ 123 (731)
..+.+.+..+...|+..|.+-.++...+.+-.+.|..+=.+|...-..+..+.+++.++..
T Consensus 165 ~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~ 225 (359)
T COG1463 165 NEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLD 225 (359)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344445555666666666666666666666666666666666666666655555555443
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.32 E-value=7.3e+02 Score=32.27 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 004782 65 VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV 144 (731)
Q Consensus 65 L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~v 144 (731)
|...|.+.+...-.+ .+-...+..+-+++..+++.|.++...+....++.++|-.-+..+..+|+.+.. +.+.+
T Consensus 513 l~~~~~~~~eele~~----q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e--~~~~~ 586 (1317)
T KOG0612|consen 513 LEALVRQLEEELEDA----QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE--ENRDL 586 (1317)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh--ccccH
Confidence 333344444444433 556667788889999999999999999998889999998888888888776654 44455
Q ss_pred HHHHHHHHhc
Q 004782 145 PARIEKLIAG 154 (731)
Q Consensus 145 P~kie~lis~ 154 (731)
-++++.+...
T Consensus 587 ~d~l~~le~~ 596 (1317)
T KOG0612|consen 587 EDKLSLLEES 596 (1317)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 72
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.20 E-value=1.2e+03 Score=30.73 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHH
Q 004782 117 QLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEK 150 (731)
Q Consensus 117 ~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~ 150 (731)
+|..|-.+-..+..-++-+..-........+|+.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 505 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLKKEVKS 505 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4444444444444444444444444444444444
No 73
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.71 E-value=7.8e+02 Score=30.33 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=105.1
Q ss_pred CCCCchHHHHHhhc--------cCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 004782 30 PRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (731)
Q Consensus 30 ~~f~~~~~~l~~L~--------s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK 101 (731)
++|+|....-.... .+.-+...+.+++.....+..=..-|+..+..+..++-.|......+..-..++-.++
T Consensus 47 ~~~~~~~l~~~f~~~~~eL~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lg 126 (763)
T KOG3745|consen 47 KDLDPKGLIKTFENEIKELTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLG 126 (763)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHH
Confidence 57777766544421 1122333455555555555555666777778888889999999888888888888999
Q ss_pred HHHHHHHHHhcc--CchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCC
Q 004782 102 VDLAEAKRRLGT--RNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV 179 (731)
Q Consensus 102 ~~L~~~k~~L~~--~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I 179 (731)
+.|+.+.+.-.. .+.+|-+-|.+-..-++ . ..++.++..+ -+.-++|++++..=+.+.+..+..
T Consensus 127 q~Le~v~~~r~r~~~a~~lir~~~eF~s~~~-~---~i~s~i~~~~--------~~k~leaa~~~~kLl~isnel~~~-- 192 (763)
T KOG3745|consen 127 QQLETVIKPRSRAVDAQELIRYYNEFLSGGR-Q---YINSDIFTSA--------FDKNLEAADRIKKLLLISNELPYG-- 192 (763)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhccCc-h---hHHHHHhcCh--------hhhHHHHHHHHHHHHHHhccCCcc--
Confidence 888877654411 12233333332221110 0 1112222222 256789999999888888876555
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHh
Q 004782 180 GALQDVRSELTKLRGVLFYKVLEDLHAH 207 (731)
Q Consensus 180 ~AL~dlR~~L~~q~~~L~d~LieEL~~~ 207 (731)
-....+..++...+.|-..++||..+.
T Consensus 193 -~f~~tka~I~k~~~~lE~~lleeF~~~ 219 (763)
T KOG3745|consen 193 -KFSETKARIEKKYEVLEQNLLEEFNSA 219 (763)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999998543
No 74
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.01 E-value=8.9e+02 Score=28.67 Aligned_cols=13 Identities=8% Similarity=0.325 Sum_probs=5.4
Q ss_pred HHHHHHHhHhhcC
Q 004782 16 LREELARIEVSWV 28 (731)
Q Consensus 16 l~~~l~~I~~ew~ 28 (731)
+.+.+.....+|.
T Consensus 159 ~~~~~~~~~~~~~ 171 (563)
T TIGR00634 159 KVKAYRELYQAWL 171 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 75
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.13 E-value=6.7e+02 Score=26.96 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcc--CchHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 004782 89 LFSESAESIKELKVDLAE-AKRRLGT--RNKQLHQLWYRSVTLRHIISLLDQIEGIAK 143 (731)
Q Consensus 89 ~i~~Sq~~i~~lK~~L~~-~k~~L~~--~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~ 143 (731)
.+...|..+..+++++.. +-..+.. +|..|.++...-..-+.+.+.-..|+.+.+
T Consensus 82 ~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~ 139 (291)
T PF10475_consen 82 ICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLE 139 (291)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666555 3333322 455555555555555555555555555443
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.12 E-value=8.7e+02 Score=28.29 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 004782 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKV 102 (731)
Q Consensus 69 V~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~ 102 (731)
+.++-..+......+..+...+..-++.+..++.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444433
No 77
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=31.94 E-value=3.7e+02 Score=29.59 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHH
Q 004782 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQL 163 (731)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~l 163 (731)
.-|...+.+.+.+|...|+.|++..+ ++-+.-... .+-|..|+ |.|..+=+++|+|..++...+|..+
T Consensus 86 ~~l~~~v~d~~rri~~~kerL~e~~e-------e~~~e~~~k---~~~v~~l~--e~I~~~l~~~E~LG~eG~Veeaq~~ 153 (319)
T KOG0796|consen 86 EILERFVADVDRRIEKAKERLAETVE-------ERSEEAARK---AEKVHELE--EKIGKLLEKAEELGEEGNVEEAQKA 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHH---HHHHHHHH--HHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 34566678888899999999999833 111111111 22222333 5666778899999999999998887
Q ss_pred HHHHH
Q 004782 164 HAQSA 168 (731)
Q Consensus 164 L~~s~ 168 (731)
+.++-
T Consensus 154 ~~e~E 158 (319)
T KOG0796|consen 154 MKEVE 158 (319)
T ss_pred HHHHH
Confidence 76543
No 78
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=31.88 E-value=6e+02 Score=26.32 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHh---HHHHHHHHHHHHHHHHhcHHHHHH
Q 004782 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV---TLRHIISLLDQIEGIAKVPARIEK 150 (731)
Q Consensus 74 q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~---~~~~~l~iL~~Ie~l~~vP~kie~ 150 (731)
+-+++-++.|-.+...+.+..-++...+..|...+..|+..+..+.+--..+. .+..+-...++++.|+.+|+.+++
T Consensus 24 ~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et 103 (204)
T COG5491 24 QVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFET 103 (204)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677777777777779999999999999999997777755333333 355566778889999999999988
Q ss_pred HH
Q 004782 151 LI 152 (731)
Q Consensus 151 li 152 (731)
..
T Consensus 104 ~~ 105 (204)
T COG5491 104 QF 105 (204)
T ss_pred HH
Confidence 76
No 79
>PRK11281 hypothetical protein; Provisional
Probab=31.79 E-value=8.6e+02 Score=31.63 Aligned_cols=123 Identities=18% Similarity=0.124 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHH-HHHHHHHHHHHHHHhcHHHHHHHHhc--cCHHHHHH
Q 004782 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL-RHIISLLDQIEGIAKVPARIEKLIAG--KQYYAAVQ 162 (731)
Q Consensus 86 i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~-~~~l~iL~~Ie~l~~vP~kie~lis~--k~yl~A~~ 162 (731)
+-..+.+-.+...+..+.|.+.++.|..... ...+.+.- .+.-+-+.+|+...+.|.--..-+++ +.-++|-.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT----~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~ 201 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQT----QPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQ 201 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHH
Confidence 4444445555555555555555555544222 22333322 44444445554433331100000222 33445555
Q ss_pred HHHHHHHHHcccCCCCCCccHHH---HHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 004782 163 LHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLHAHLYNRG 212 (731)
Q Consensus 163 lL~~s~~~l~~~~L~~I~AL~dl---R~~L~~q~~~L~d~LieEL~~~lY~Ks 212 (731)
.+.++..-.++.+|.+...+++| |.++..++....+..++.|++.+..|.
T Consensus 202 ~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 202 ALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566677777776665 567778888888889999999998864
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.40 E-value=9.3e+02 Score=31.51 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=46.4
Q ss_pred HhhccCch-hhHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHH-hHh-------hHHHHHHHHHHHHHHHHHHHHH
Q 004782 40 HILTSKDR-EGEVQILKDQNDIIEEVVDEV------VHAYHTGFNKA-IQN-------YSQILRLFSESAESIKELKVDL 104 (731)
Q Consensus 40 ~~L~s~~~-e~~~~~l~~~~~~l~~~L~~v------V~~h~q~Fn~s-I~s-------y~~i~~~i~~Sq~~i~~lK~~L 104 (731)
.=|.+.|- ...+..+++....+++.|+.+ |.+ |+.|-+. -.. -......+...+.++..+++.+
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~e-Y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 839 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIE-YEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQEL 839 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33544433 335566666666666666655 333 4444333 332 4556666677777777777777
Q ss_pred HHHHHHhccCchHHH
Q 004782 105 AEAKRRLGTRNKQLH 119 (731)
Q Consensus 105 ~~~k~~L~~~~~~L~ 119 (731)
..++..+..++.+|.
T Consensus 840 ~~~~~~~~~~~~~le 854 (1201)
T PF12128_consen 840 NQLQKEVKQRRKELE 854 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776666553
No 81
>PHA02503 putative transcription regulator; Provisional
Probab=31.40 E-value=46 Score=26.30 Aligned_cols=20 Identities=20% Similarity=0.617 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhhhHHHH
Q 004782 622 LLAFVENFVKDHLLPTMFVD 641 (731)
Q Consensus 622 l~~Fl~~Fv~~~FLp~l~~~ 641 (731)
|..|-.+|++++.+|||.+-
T Consensus 26 l~~~s~~fl~~slipql~ew 45 (57)
T PHA02503 26 LSVYSKDFLQNSLIPQLYEW 45 (57)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 66788899999999999863
No 82
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=29.86 E-value=7.1e+02 Score=26.57 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s 125 (731)
+|+.++... .+.++..|+ .++.|-..+...|.....+...+.++...+..+=.++...-.-|..++.+|..|....
T Consensus 28 GrG~~lg~~---l~~l~~~l~-~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~ 103 (267)
T PF11887_consen 28 GRGEQLGET---LDDLNTLLA-TLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSA 103 (267)
T ss_pred CcchhHHHH---HHHHHHHHH-HHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555444333 333333333 2455667788889999999999999999999999999999999999999999888776
Q ss_pred hHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 004782 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (731)
Q Consensus 126 ~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (731)
........-+ |.. ....+..+++.|.....+|.+
T Consensus 104 ~~~a~~~~~~-----l~~---------n~~~L~~~~~~L~p~~~lL~~ 137 (267)
T PF11887_consen 104 TGLADTGTDF-----LAD---------NRDNLIRALDDLRPTTDLLAK 137 (267)
T ss_pred HHHHHHHHHH-----HHH---------hHHHHHHHHHHHHHHHHHHHH
Confidence 6543332211 000 123566778888888888876
No 83
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.80 E-value=6.4e+02 Score=26.02 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRL 111 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L 111 (731)
+....+.+++.....+...|+++-++.- ..-+.+.+.+.++.+.+.+|++...+.+..|
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~-------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN-------QRTAEMQQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777777777777777554421 2223334444444444444444444443333
No 84
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.73 E-value=3.7e+02 Score=33.47 Aligned_cols=170 Identities=14% Similarity=0.200 Sum_probs=94.6
Q ss_pred cCCCCCCchHHHHHhhc--c-CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHH-HHHH
Q 004782 27 WVAPRFDSLPHVVHILT--S-KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIK-ELKV 102 (731)
Q Consensus 27 w~~~~f~~~~~~l~~L~--s-~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~-~lK~ 102 (731)
...+.|+|-...++.=. + ++.+....-++...+.=...=...|..++..|-.+..+-..|-..+..-.++.. .+=.
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 34578888888887732 1 233333333332222222223345676666666665555555555544111111 1112
Q ss_pred HHHHHHHHhccCchHH-HHHHHHHhH---HHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCC
Q 004782 103 DLAEAKRRLGTRNKQL-HQLWYRSVT---LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQT 178 (731)
Q Consensus 103 ~L~~~k~~L~~~~~~L-~~L~~~s~~---~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~ 178 (731)
+|..|-+....+.+-+ ..+..|.-+ -+-++-+|.-...|-..|..||.-|.++.|.-++.=..+|..+.-+
T Consensus 246 ~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~----- 320 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK----- 320 (934)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc-----
Confidence 2666655555555443 223333332 2356667777777888999999999999998888877777666655
Q ss_pred CCccHHHHHHHHH-------hHHHHHHHHHH
Q 004782 179 VGALQDVRSELTK-------LRGVLFYKVLE 202 (731)
Q Consensus 179 I~AL~dlR~~L~~-------q~~~L~d~Lie 202 (731)
.-+.-+|.+|++ .+..|++.|++
T Consensus 321 -t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~ 350 (934)
T KOG2347|consen 321 -TEVNLFKKVLEEVEKRMQSFKETLYRKLID 350 (934)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555544 34455555543
No 85
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=29.48 E-value=4.7e+02 Score=27.55 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHh
Q 004782 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (731)
Q Consensus 47 ~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (731)
.......|+...+.+-+++..+|. |..+...+.+-|+..+..++.+-.. ..|..+=..|+...+.+.+++.+..
T Consensus 27 k~~~ie~LE~qLk~L~k~~~~lv~-~r~eLa~~~~eFa~s~~~L~~~E~~-----~~Ls~als~laev~~~i~~~~~~qa 100 (234)
T cd07665 27 KLQEVECEEQRLRKLHAVVETLVN-HRKELALNTALFAKSLAMLGSSEDN-----TALSRALSQLAEVEEKIEQLHQEQA 100 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777777777776 5589999999999999999988742 3344444445555555666665544
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.44 E-value=1.4e+03 Score=29.87 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHH
Q 004782 66 DEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129 (731)
Q Consensus 66 ~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~ 129 (731)
.+.+.+--++.+.+=..-..+...|..+|+.+.++.+....+...+..-...|.+||..-.+.+
T Consensus 1569 ~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1569 VEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666667788888888999999999999999999999999999997765443
No 87
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.00 E-value=8.9e+02 Score=27.76 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS--QILRLFSESAESIKELKVDLAEA 107 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~--~i~~~i~~Sq~~i~~lK~~L~~~ 107 (731)
....++|++....+..+++..+..+.+.++..-..+. .-...+...++++..+.+.|..+
T Consensus 258 ~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 258 DELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777777766555443 22234555666666666666544
No 88
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=28.92 E-value=6e+02 Score=27.58 Aligned_cols=137 Identities=22% Similarity=0.248 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHHhHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhH
Q 004782 53 ILKDQNDIIEEVVDEVVHAYHTGF--NKAIQNYS---QILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (731)
Q Consensus 53 ~l~~~~~~l~~~L~~vV~~h~q~F--n~sI~sy~---~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (731)
-++.+++.+.+++.++-+...++= -..++++. .....-..+..+...+|...+.++..+...+=+|+.|-.+-+.
T Consensus 15 il~t~f~qlqk~ia~ikeak~rg~~~e~~~q~~~~fv~Lr~aNR~~~~q~~~~r~~t~e~k~~vD~~~LQLqnl~yev~H 94 (303)
T KOG2216|consen 15 ILNTQFDQLQKAIAGIKEAKSRGPIEENRIQTMSKFVLLRHANRLLHAQLKKARKETEEAKNKVDAKHLQLQNLLYEVQH 94 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCHhhhhHHHHHHHHHH
Confidence 445555666666666655555444 33344444 4444455566778889999999999999999999999888887
Q ss_pred HHHHHH-------------HHHHHHHHHhcHHHHHH--HHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHh
Q 004782 128 LRHIIS-------------LLDQIEGIAKVPARIEK--LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (731)
Q Consensus 128 ~~~~l~-------------iL~~Ie~l~~vP~kie~--lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q 192 (731)
++..|. +...+|-.+..|+.+.. .-++..+ ..-+..++- +|..=..|..++++|..+
T Consensus 95 lkkeI~~c~~fks~~~el~Lvs~eEf~kEaP~i~a~ae~sssn~H-------~q~larL~~-ElkQRk~L~~~~~eLl~~ 166 (303)
T KOG2216|consen 95 LKKEIKRCLDFKSKYTELELVSEEEFNKEAPEIIADAEESSSNPH-------KQMLARLDF-ELKQRKELSKLYQELLSR 166 (303)
T ss_pred HHHHHHHHHHhhccCcccccccHHHHhhhCCcchhhhHhhcCCcH-------HHHHHHhHH-HHHHHHHHHHHHHHHHHH
Confidence 776654 45556667777766654 4444443 223333333 566667788899999988
Q ss_pred HHHHH
Q 004782 193 RGVLF 197 (731)
Q Consensus 193 ~~~L~ 197 (731)
+..|-
T Consensus 167 K~~Ll 171 (303)
T KOG2216|consen 167 KAALL 171 (303)
T ss_pred HHHHH
Confidence 88873
No 89
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.85 E-value=1e+03 Score=28.19 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=61.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHHHHHHHHh
Q 004782 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (731)
Q Consensus 74 q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~kie~lis 153 (731)
+.++.....|+.+...+.+..+++..+++.-.+-+..|..-+.+-.+.-..-..++..+.-+...=+-..+|.--+.++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 45555566677777777777777777777777777666655555544444444444444444333333344444444433
Q ss_pred ccCHHHHHHHHHHHHHHHcccCCCCCCccH
Q 004782 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (731)
Q Consensus 154 ~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~ 183 (731)
.|-.+.+-+.+-...++. .=.++.|+.
T Consensus 449 --~~~~~~~~i~~l~~~L~~-g~VNm~ai~ 475 (569)
T PRK04778 449 --MFFEVSDEIEALAEELEE-KPINMEAVN 475 (569)
T ss_pred --HHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 344566666666666666 556666665
No 90
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.30 E-value=1.4e+03 Score=29.64 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhc---------HHHHHHHHhc
Q 004782 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV---------PARIEKLIAG 154 (731)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~v---------P~kie~lis~ 154 (731)
.++-..+.....++.++++.+.+..+.+..-+..+..+= +...+.-+-|.+|+...+. |.+...+-++
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p---q~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae 181 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLP---QQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAE 181 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch---hhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Confidence 444455555555555555555555554433333333333 2225566666667654443 3333334444
Q ss_pred cCHHHHHHHHHHHHHHHcccCCCCCC---ccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 004782 155 KQYYAAVQLHAQSALMLEREGLQTVG---ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (731)
Q Consensus 155 k~yl~A~~lL~~s~~~l~~~~L~~I~---AL~dlR~~L~~q~~~L~d~LieEL~~~lY~Ks 212 (731)
..++.|. ...++. ++.+.. .|-.+|.++..++....+..++.|++.+..|.
T Consensus 182 ~~~l~~~------~~~l~~-~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 182 SAALKAL------VDELEL-AQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHH------HHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 222222 444433 34456778888888889999999999998875
No 91
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=28.13 E-value=1.1e+03 Score=28.33 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=71.8
Q ss_pred HHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHh-HHHHHHHHHHHHHHHHhcHH
Q 004782 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSV-TLRHIISLLDQIEGIAKVPA 146 (731)
Q Consensus 69 V~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~-~~~L~~L~~~s~-~~~~~l~iL~~Ie~l~~vP~ 146 (731)
|...+...+-.+..+-.....|-..+..+..+++.|..++...... .+++..+-.--. .=+.+.++...|+.++..-.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666677777777777777888999999999887664 344443332222 33445555566776665433
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHH
Q 004782 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (731)
Q Consensus 147 kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL 204 (731)
+. .+-....+..+++.-=.-++.|..++..|+++ ..|+.|-.||
T Consensus 310 ~e------------~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~EL 353 (629)
T KOG0963|consen 310 EE------------REKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKKEL 353 (629)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHH
Confidence 22 22223333334331111245677777777776 6677777777
No 92
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=27.88 E-value=4.8e+02 Score=25.30 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004782 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (731)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~ 114 (731)
....+...|+.-.+....||+.|..|...+.|.
T Consensus 65 ~~~~~k~~i~Sl~~~f~~lk~~l~~C~~~~~Ce 97 (137)
T smart00188 65 HGPDIKEHVNSLGEKLKTLRLRLRRCHRFLPCE 97 (137)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHCccccCcc
Confidence 445678888888999999999999999999993
No 93
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=27.70 E-value=6.1e+02 Score=25.07 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred CchHHHHHHHHHhHhhcCCCCCCchHHHHHhhcc-CchhhHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHhHhhHHH
Q 004782 11 PEKAYLREELARIEVSWVAPRFDSLPHVVHILTS-KDREGEVQILKDQNDIIEEVVDE---VVHAYHTGFNKAIQNYSQI 86 (731)
Q Consensus 11 ~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s-~~~e~~~~~l~~~~~~l~~~L~~---vV~~h~q~Fn~sI~sy~~i 86 (731)
-....+.+-++.|+.+.+ ++=.. .+-.+..+..++...+++..++. .|..=.+.||--..-|.++
T Consensus 44 e~id~imer~~~ieNdlg-----------~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qe 112 (157)
T COG3352 44 EVIDAIMERMTDIENDLG-----------KVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQE 112 (157)
T ss_pred HHHHHHHHHHHHHHhhcc-----------cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHH
Confidence 344455566666666666 22100 12233333333333444444333 4555568899888888888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcc
Q 004782 87 LRL-FSESAESIKELKVDLAEAKRRLGT 113 (731)
Q Consensus 87 ~~~-i~~Sq~~i~~lK~~L~~~k~~L~~ 113 (731)
++. +.+-.++|.++|.-++.++..++-
T Consensus 113 s~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 113 SRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 888 777888888888888887766654
No 94
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=26.73 E-value=1.1e+03 Score=27.88 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHH-HHHHHHhcHHHHHHHHh
Q 004782 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIA 153 (731)
Q Consensus 75 ~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~-~Ie~l~~vP~kie~lis 153 (731)
+.|.-+.++.+=...+..+.+.-..+|.++.+-...++ +.+..|+ +++.+..--.+.+.+-+
T Consensus 126 ~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~G-----------------e~~~~lEk~Le~i~~~l~qf~~lt~ 188 (570)
T COG4477 126 DLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYG-----------------EAAPELEKKLENIEEELSQFVELTS 188 (570)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhh-----------------hhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444445555444455555444444444444333333 3333332 35555556677888999
Q ss_pred ccCHHHHHHHHHHHHHHHcc
Q 004782 154 GKQYYAAVQLHAQSALMLER 173 (731)
Q Consensus 154 ~k~yl~A~~lL~~s~~~l~~ 173 (731)
+++|.+|.+.|.++-+.+-.
T Consensus 189 ~Gd~ieA~evl~~~ee~~~~ 208 (570)
T COG4477 189 SGDYIEAREVLEEAEEHMIA 208 (570)
T ss_pred CCChhHHHHHHHHHHHHHHH
Confidence 99999999999988776643
No 95
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.14 E-value=1e+03 Score=27.13 Aligned_cols=179 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHhhc------CCCC-----------------CCchHHHHHhhccC--chhhHHHHHHHHHHHHHHHHH
Q 004782 12 EKAYLREELARIEVSW------VAPR-----------------FDSLPHVVHILTSK--DREGEVQILKDQNDIIEEVVD 66 (731)
Q Consensus 12 ~~~~l~~~l~~I~~ew------~~~~-----------------f~~~~~~l~~L~s~--~~e~~~~~l~~~~~~l~~~L~ 66 (731)
++..++..+..|...- ..+. .++....+..+.+- ....-+..|-..+|.|-.+++
T Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 148 SLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHH
Q 004782 67 ------EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEG 140 (731)
Q Consensus 67 ------~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~ 140 (731)
.--.++..-|.--..-=..+=.-+.+-++.+..|......+++.|....+.+..++..-...-.++..... .
T Consensus 228 ~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 305 (412)
T PF04108_consen 228 HTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE--R 305 (412)
T ss_pred HhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred HHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 004782 141 IAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (731)
Q Consensus 141 l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~ 206 (731)
+.+ |..+..-+.+-+.....+-...+..+.+|+........ -|+.|+-|+++
T Consensus 306 l~~-------------yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~-aY~~LL~Ev~R 357 (412)
T PF04108_consen 306 LPS-------------YLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLS-AYDSLLLEVER 357 (412)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
No 96
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=26.03 E-value=6.3e+02 Score=24.73 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=21.1
Q ss_pred HhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHH
Q 004782 152 IAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVR 186 (731)
Q Consensus 152 is~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR 186 (731)
-+++.|..+++.+..........-+..+..++++.
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 157 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE 157 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55678888888887776666553333344444433
No 97
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=25.79 E-value=5.3e+02 Score=28.29 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=45.5
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHH-------HHHHHhH----HHHHHHHHHHH--HH
Q 004782 78 KAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNK----QLHQ-------LWYRSVT----LRHIISLLDQI--EG 140 (731)
Q Consensus 78 ~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~----~L~~-------L~~~s~~----~~~~l~iL~~I--e~ 140 (731)
-+++.|..++. .+....|..||...++...+|..|-- ||.+ +...+++ ++.+-+.-.+| ++
T Consensus 167 vSL~RYr~~lk--ee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Q 244 (302)
T PF07139_consen 167 VSLTRYRVVLK--EEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQ 244 (302)
T ss_pred HHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 34455555443 24444555566666666666655532 2222 2222222 22333333333 34
Q ss_pred HHhcHHHHHHHHhccCHHHHHHHH
Q 004782 141 IAKVPARIEKLIAGKQYYAAVQLH 164 (731)
Q Consensus 141 l~~vP~kie~lis~k~yl~A~~lL 164 (731)
|..+-..|..++++++|.+.+...
T Consensus 245 l~ELRadIK~fvs~rk~de~lg~~ 268 (302)
T PF07139_consen 245 LAELRADIKHFVSERKYDEELGRA 268 (302)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhHh
Confidence 556667999999999998876543
No 98
>PRK09039 hypothetical protein; Validated
Probab=25.35 E-value=9.6e+02 Score=26.62 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=5.4
Q ss_pred chhhHHHHHHHHH
Q 004782 46 DREGEVQILKDQN 58 (731)
Q Consensus 46 ~~e~~~~~l~~~~ 58 (731)
+.+.++..++..+
T Consensus 78 ~l~~~l~~l~~~l 90 (343)
T PRK09039 78 DLQDSVANLRASL 90 (343)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444433
No 99
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=24.64 E-value=1.2e+03 Score=27.65 Aligned_cols=48 Identities=6% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004782 57 QNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (731)
Q Consensus 57 ~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~ 105 (731)
..+.++.+|++ +.+|-++...+|.+|......+.++|.++..+...+.
T Consensus 125 lS~~ledaL~a-aq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~ 172 (593)
T PRK15374 125 VSKEFQTALGE-AQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQ 172 (593)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34556666665 6789999999999999999999999999998866543
No 100
>PF13514 AAA_27: AAA domain
Probab=24.39 E-value=1.1e+03 Score=30.60 Aligned_cols=94 Identities=18% Similarity=0.349 Sum_probs=52.0
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 004782 44 SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (731)
Q Consensus 44 s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~ 123 (731)
..++...+.++.+.++.+++.|+..-. ....|......+...++++..++..+..++..+..- ..+.+.|-
T Consensus 145 prg~~~~in~~l~~l~e~~~~l~~~~~--------~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l-er~~~~~p 215 (1111)
T PF13514_consen 145 PRGRKPEINQALKELKELERELREAEV--------RAAEYQELQQALEEAEEELEELRAELKELRAELRRL-ERLRRAWP 215 (1111)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhH
Confidence 334555555555555555555555422 234556666666666666666666666666554332 44555555
Q ss_pred HHhHHHHHHHHHHHHHHHHhcHH
Q 004782 124 RSVTLRHIISLLDQIEGIAKVPA 146 (731)
Q Consensus 124 ~s~~~~~~l~iL~~Ie~l~~vP~ 146 (731)
--.+++..-.-|..+..+..+|+
T Consensus 216 ~~~~~~~l~~~l~~l~~~~~~p~ 238 (1111)
T PF13514_consen 216 LLAELQQLEAELAELGEVPDFPE 238 (1111)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCh
Confidence 55555555555555555555553
No 101
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.15 E-value=7.1e+02 Score=24.63 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHH
Q 004782 50 EVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (731)
Q Consensus 50 ~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~ 96 (731)
....|+.....+...++.+|..+ ++...+++-|+..+..++.+...
T Consensus 12 ~v~~le~~l~~l~~~~~~~~k~~-~~l~~~~~elg~~~~~Ls~~e~~ 57 (218)
T cd07596 12 YILKLEEQLKKLSKQAQRLVKRR-RELGSALGEFGKALIKLAKCEEE 57 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc
Confidence 34566666666666666666554 66677888888888888887654
No 102
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=23.89 E-value=66 Score=27.20 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHcccC
Q 004782 146 ARIEKLIAGKQYYAAVQLHAQSALMLEREG 175 (731)
Q Consensus 146 ~kie~lis~k~yl~A~~lL~~s~~~l~~~~ 175 (731)
.-|+..+..++|-.|.+++..+++++...+
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 346677889999999999999999998755
No 103
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.78 E-value=1.6e+03 Score=28.74 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=69.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCchHHHHHHHH-HhHHHHHHHHHHHHHHHHhc-----
Q 004782 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLG---TRNKQLHQLWYR-SVTLRHIISLLDQIEGIAKV----- 144 (731)
Q Consensus 74 q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~---~~~~~L~~L~~~-s~~~~~~l~iL~~Ie~l~~v----- 144 (731)
...++-+..|++......+.+.+|+.+++.|..+...+. ....+|++-+.. ..+|+..=+-+..++.++.-
T Consensus 467 e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~EN 546 (1195)
T KOG4643|consen 467 EELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEEN 546 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345677788889999999999999999999888876553 345555554433 34455554444444444322
Q ss_pred ---HHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHH
Q 004782 145 ---PARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (731)
Q Consensus 145 ---P~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL 204 (731)
-.+|..|...-.=-.+.+=..+-.++.+...=.-|.||..+|-+.+..+..+.+-=+.|.
T Consensus 547 a~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d 609 (1195)
T KOG4643|consen 547 AHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFED 609 (1195)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 223333333212222222233333333331122255566666665555555444333333
No 104
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.47 E-value=1.3e+03 Score=27.43 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHH-HHHHHHhcHHHHHHHHhccCHHHHHH
Q 004782 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIAGKQYYAAVQ 162 (731)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~-~Ie~l~~vP~kie~lis~k~yl~A~~ 162 (731)
..++..=.+.+..|.++|..-...|+.|..++.. |...+..|+ +++.+-.--++.+.+..+++|.+|.+
T Consensus 129 ~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~----------~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e 198 (569)
T PRK04778 129 QELLESEEKNREEVEQLKDLYRELRKSLLANRFS----------FGPALDELEKQLENLEEEFSQFVELTESGDYVEARE 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----------ccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3444445555666666666666666555555443 333333333 35666666789999999999999999
Q ss_pred HHHHHHHHH
Q 004782 163 LHAQSALML 171 (731)
Q Consensus 163 lL~~s~~~l 171 (731)
.|.+.-.-+
T Consensus 199 ~l~~l~~~~ 207 (569)
T PRK04778 199 ILDQLEEEL 207 (569)
T ss_pred HHHHHHHHH
Confidence 987655544
No 105
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=23.33 E-value=2.9e+02 Score=30.89 Aligned_cols=97 Identities=14% Similarity=0.255 Sum_probs=45.9
Q ss_pred HHHHHHHHHhHhhcCCCCCCchHHHHH-hhccCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHH
Q 004782 14 AYLREELARIEVSWVAPRFDSLPHVVH-ILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE 92 (731)
Q Consensus 14 ~~l~~~l~~I~~ew~~~~f~~~~~~l~-~L~s~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~ 92 (731)
..|+.-|+.|...|....|...++--. +..-.+.+.-...+++....+...+. ..|+..|-.-|.....-+..+.+
T Consensus 142 ~~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~---S~~~~~~~~~v~~w~~~L~~~~~ 218 (408)
T PF08393_consen 142 YKIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKS---SPFVKPFRDEVEEWEKKLNNIQE 218 (408)
T ss_dssp HHHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCS---STTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhceeeeeccccchhheecchHHHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999766655444331 11011233334445444433333221 24445555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 004782 93 SAESIKELKVDLAEAKRRLGT 113 (731)
Q Consensus 93 Sq~~i~~lK~~L~~~k~~L~~ 113 (731)
.-+....+...-..-.....+
T Consensus 219 il~~w~~~Q~~W~yL~~if~~ 239 (408)
T PF08393_consen 219 ILEEWMEVQRKWMYLEPIFSS 239 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444333334443
No 106
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.04 E-value=3.5e+02 Score=32.20 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=7.8
Q ss_pred HHHHHHHhcHHH
Q 004782 136 DQIEGIAKVPAR 147 (731)
Q Consensus 136 ~~Ie~l~~vP~k 147 (731)
.++++|+++|.+
T Consensus 251 ~~~~~lk~ap~~ 262 (555)
T TIGR03545 251 ADLAELKKAPQN 262 (555)
T ss_pred HHHHHHHhccHh
Confidence 456667777765
No 107
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=22.98 E-value=4.6e+02 Score=28.67 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCcccccc
Q 004782 617 LGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRA 660 (731)
Q Consensus 617 ~~~~~l~~Fl~~Fv~~~FLp~l~~~~~~~~~~~~~~~dAfk~~~ 660 (731)
.+++.....+..|++..--+.|+..+...+++.+..++.|..++
T Consensus 69 R~Ns~~tkll~~y~r~~g~~yL~~~L~p~i~~ii~~~~~~eidp 112 (323)
T cd05392 69 RRNSLATRLLSAYARKKGQNYLRKTLKPLLRELVDNPESFEVEP 112 (323)
T ss_pred hcCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCccCcCc
Confidence 45677888999999998888899999999999999888876664
No 108
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.53 E-value=6.7e+02 Score=25.06 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHH
Q 004782 98 KELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (731)
Q Consensus 98 ~~lK~~L~~~k~~L~~~~~~L~~L~~~s 125 (731)
..+...+..+++.|...-+.|..+..++
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555544445555544433
No 109
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=1.5e+03 Score=27.65 Aligned_cols=134 Identities=22% Similarity=0.313 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH--HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccCchHHHHHHH
Q 004782 52 QILKDQNDIIEEVVDEVVHAYHT--GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRR------LGTRNKQLHQLWY 123 (731)
Q Consensus 52 ~~l~~~~~~l~~~L~~vV~~h~q--~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~------L~~~~~~L~~L~~ 123 (731)
.-|++..-.+|.+|.+.|.+|-- ....+|.+= . +.+++++++++|+.|+.. |....-.|-+++.
T Consensus 652 ~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n-------~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~ 723 (929)
T COG5113 652 KMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-N-------ISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHIL 723 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-c-------hhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHh
Confidence 34555566789999999999831 122222221 2 445666666666666543 3334455555555
Q ss_pred HHhH----HHHHHHHHHHH---------------------------------------HHHHhcHHHHHHHHhccCHHHH
Q 004782 124 RSVT----LRHIISLLDQI---------------------------------------EGIAKVPARIEKLIAGKQYYAA 160 (731)
Q Consensus 124 ~s~~----~~~~l~iL~~I---------------------------------------e~l~~vP~kie~lis~k~yl~A 160 (731)
..+- -.+|+.-|-.| =.|+.-|.-||+--++|++..
T Consensus 724 ~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~- 802 (929)
T COG5113 724 DEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFD- 802 (929)
T ss_pred hccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHHHHHHhhhhcchHHHHHHHHccccccc-
Confidence 5441 12222222221 123333555555555555543
Q ss_pred HHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHH
Q 004782 161 VQLHAQSALMLEREGLQTVGALQDVRSELTKLRG 194 (731)
Q Consensus 161 ~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~ 194 (731)
.++.++|++++.+..|.+=.-+..||+.....|.
T Consensus 803 ~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~ 836 (929)
T COG5113 803 IDFFRRALRICENKYLISESQIEELRSFINRLEK 836 (929)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 4789999999998889886555566655554444
No 110
>PHA00212 putative transcription regulator
Probab=22.09 E-value=84 Score=25.36 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhhhHHHH
Q 004782 622 LLAFVENFVKDHLLPTMFVD 641 (731)
Q Consensus 622 l~~Fl~~Fv~~~FLp~l~~~ 641 (731)
|..|-.+|+++..+||+.+-
T Consensus 29 l~~~s~~f~~~~l~pql~ew 48 (63)
T PHA00212 29 LKDFSVQFIKDSLLPQLFEW 48 (63)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 46688899999999999863
No 111
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.71 E-value=8.7e+02 Score=24.79 Aligned_cols=82 Identities=9% Similarity=0.153 Sum_probs=53.8
Q ss_pred HHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 004782 65 VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV 144 (731)
Q Consensus 65 L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~v 144 (731)
|+.+=.-|-.+.++--++-+.+-..|..-.+.|+.+|..|..++.........|++.-.+-..-+.-++-|.++-.=+..
T Consensus 38 Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL 117 (194)
T PF15619_consen 38 LKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNL 117 (194)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33333334445555556668888888888899999999999888888887777776555555555555555544444444
Q ss_pred HH
Q 004782 145 PA 146 (731)
Q Consensus 145 P~ 146 (731)
|+
T Consensus 118 ~e 119 (194)
T PF15619_consen 118 AE 119 (194)
T ss_pred hh
Confidence 43
No 112
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.69 E-value=1.6e+03 Score=27.90 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHH
Q 004782 58 NDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ 137 (731)
Q Consensus 58 ~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~ 137 (731)
.+.+-..|+..+..|--+.-+-=..|. +.+-+|-+.+..||..+++-|..++.....|++--. ++|..+
T Consensus 46 ~~~~~e~Le~~ir~~d~EIE~lcn~hy---QdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~------eLiv~~-- 114 (800)
T KOG2176|consen 46 HKPVMEKLENRIRNHDKEIEKLCNFHY---QDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGK------ELIVKK-- 114 (800)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH------HHHHHH--
Confidence 355667777777777665543222211 112222333444444444444444444444433222 223333
Q ss_pred HHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 004782 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (731)
Q Consensus 138 Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~~lY~Ks 212 (731)
.+-++....++...+|++++..++..|+- -+-+++++.+++-----.-+|+| .++|++-
T Consensus 115 -------e~lv~~r~~~rnit~ai~~l~~Cl~vLEl--------~sK~~e~~s~kqyy~aLktle~l-E~~yL~~ 173 (800)
T KOG2176|consen 115 -------EDLVRCRTQSRNITEAIELLTLCLPVLEL--------YSKLQEQMSEKQYYPALKTLESL-EKVYLPR 173 (800)
T ss_pred -------HHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHhccHHHHHHHHHHH-HHHHHHh
Confidence 33355566677777888888877777765 35566666665544444456666 5667663
No 113
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=21.67 E-value=9.5e+02 Score=25.22 Aligned_cols=139 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccCchHHHHHHHHHhHHHH
Q 004782 64 VVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA-------------KRRLGTRNKQLHQLWYRSVTLRH 130 (731)
Q Consensus 64 ~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~-------------k~~L~~~~~~L~~L~~~s~~~~~ 130 (731)
.|..+.-+|-.+|-.. ..|+..+...++++.+|..++..+... ...+..=....++|-.+...|+.
T Consensus 73 ~Lg~~M~~~g~~lg~~-S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~ 151 (229)
T cd07594 73 QLGQAMIEAGNDFGPG-TAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDA 151 (229)
T ss_pred HHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH---HHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHH--HHHHHHHHHHH
Q 004782 131 IISLLD---QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDLH 205 (731)
Q Consensus 131 ~l~iL~---~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~--~L~d~LieEL~ 205 (731)
.-.-+. .-+....+.+.++. ++-+|.++.+.-...+.-+-. ..+.-+++|+.-+..|-. .-.-.++++|+
T Consensus 152 ~k~r~~kAk~~~~~~~~e~elr~--Ae~kF~~~~E~a~~~M~~i~~---~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 226 (229)
T cd07594 152 CKTRVKKAKSAEAIEQAEQDLRV--AQSEFDRQAEITKLLLEGISS---THANHLRCLRDFVEAQMTYYAQCYQYMDDLQ 226 (229)
T ss_pred HHHHHhhcCCccchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhH
Q 004782 206 AHL 208 (731)
Q Consensus 206 ~~l 208 (731)
..|
T Consensus 227 ~~l 229 (229)
T cd07594 227 RQL 229 (229)
T ss_pred hhC
No 114
>PRK14160 heat shock protein GrpE; Provisional
Probab=21.27 E-value=7.2e+02 Score=25.84 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 004782 128 LRHIISLLDQIEGIAKV 144 (731)
Q Consensus 128 ~~~~l~iL~~Ie~l~~v 144 (731)
.+.+|.++|.++.....
T Consensus 114 ~~~LLpVlDnLerAl~~ 130 (211)
T PRK14160 114 LKELLPVLDNLERAAAV 130 (211)
T ss_pred HHHHhhHHhHHHHHHhc
Confidence 35566666666655443
No 115
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.13 E-value=4.1e+02 Score=29.36 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHhHH
Q 004782 50 EVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLWYRSVTL 128 (731)
Q Consensus 50 ~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~-~~~~L~~L~~~s~~~ 128 (731)
-.+..+.+.+.++.+..+++. .++|.++++.+...+..+....+++.+ ..=..|.. .|.+|.++..+=.+.
T Consensus 230 ~re~~d~W~~~ae~~~~e~~~--S~efak~~G~lvna~m~lr~~~qe~~e------~~L~~LnlPTRsElDe~~krL~EL 301 (320)
T TIGR01834 230 AKALYDLWVIAAEEAYAEVFA--SEENAKVHGKFINALMRLRIQQQEIVE------ALLKMLNLPTRSELDEAHQRIQQL 301 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCCCHHHHHHHHHHHHHH
Confidence 345556666666666666654 356666666555555544444433322 22222332 355555555555544
Q ss_pred HHH
Q 004782 129 RHI 131 (731)
Q Consensus 129 ~~~ 131 (731)
+.=
T Consensus 302 rR~ 304 (320)
T TIGR01834 302 RRE 304 (320)
T ss_pred HHH
Confidence 433
No 116
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=21.08 E-value=2.1e+02 Score=29.23 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=79.0
Q ss_pred CCCCchHHHHHHHHHhHhhcCC----CCCCchHHHH----------HhhccCchhhHHHHHHHHH------HHHHHHHHH
Q 004782 8 PISPEKAYLREELARIEVSWVA----PRFDSLPHVV----------HILTSKDREGEVQILKDQN------DIIEEVVDE 67 (731)
Q Consensus 8 p~~~~~~~l~~~l~~I~~ew~~----~~f~~~~~~l----------~~L~s~~~e~~~~~l~~~~------~~l~~~L~~ 67 (731)
|.=++.+.++++|..+-+.=.. +.+++.-|.. ......++..++.-+++.. ..++.-++.
T Consensus 26 ~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la~~~~~~~~~~~~~s~~~~~~~d~ 105 (190)
T COG5143 26 FSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLAYGYLNSIATEFLKSSALEQLIDD 105 (190)
T ss_pred ccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhhhhHHHHhhccHhhhhhhHhhcccC
Confidence 4445677788888887766553 3444433332 2233445566555554432 234455555
Q ss_pred HHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHH
Q 004782 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIE 139 (731)
Q Consensus 68 vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie 139 (731)
.|-..+..|++.|.. + ..-...++++.++-..|++.|..|+ +.+..+|.|....+.++.+=..|-
T Consensus 106 ~~~~~~~~~d~~~e~-~---y~d~s~~D~~d~l~~el~e~K~~l~---k~ie~~l~R~ekl~~lv~~ss~L~ 170 (190)
T COG5143 106 TVGIMRVNIDKVIEK-G---YRDPSIQDKLDQLQQELEETKRVLN---KNIEKVLYRDEKLDLLVDLSSILL 170 (190)
T ss_pred ccchhhhhHHHHHHh-h---cCCchhhhHHHHHHHHHHHHHHHHH---HHHHHHHHccchHHHHHHHHHHHH
Confidence 566677899999988 1 3345566667777777888877776 567788888888877777665543
No 117
>PF11053 DNA_Packaging: Terminase DNA packaging enzyme; InterPro: IPR020342 This entry represents the DNA-packaging protein Gp16 found in Enterobacteria phage T4 (Bacteriophage T4). Double-stranded DNA packaging in bacteriophages is driven by a molecular motor. The phage T4 motor is composed of the small terminase protein, Gpl6 (18kDa), the large terminase protein, Gp17 (70kDa), and the dodecameric portal protein Gp20 (61kDa). Gp16 is involved in the recognition of the viral DNA substrate, the very first step in the DNA packaging pathway, and stimulates the ATPase and packaging activities associated with Gp17 []. Gp16 modulates the activity of Gp17 [] and is required to translocate phage T4 DNA into the head []. ; PDB: 3TXS_D 3TXQ_I.
Probab=20.97 E-value=5.5e+02 Score=25.33 Aligned_cols=57 Identities=9% Similarity=0.204 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVH------------AYHTGFNKAIQNYSQILRLFSESAESIKELKV 102 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~------------~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~ 102 (731)
+.+.+|...+++.......+.+.+. .||+.|...|.+...+-..|-+-|.+++.|-.
T Consensus 46 D~e~DY~~~R~nlh~q~q~~~~a~~~aLe~Ak~SesPRa~EVf~~Lm~~m~~~nk~Ll~lqK~MKdIt~ 114 (153)
T PF11053_consen 46 DLEDDYEYVRDNLHFQQQMGQDAAKIALEVAKNSESPRAYEVFAQLMKQMTDTNKKLLDLQKKMKDITN 114 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4577777777766566555555555 68999998888888888888888888877763
No 118
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.87 E-value=8.2e+02 Score=24.16 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 004782 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (731)
Q Consensus 47 ~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s 125 (731)
....+..+-+..+.+...+..........|...+.-|..++..+.+.=..=..+-..+..+...+..++..+.+|-..+
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~ 140 (218)
T cd07596 62 LGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP 140 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5566677777778888888888888888888888888888888888777777777778888888888887777775543
No 119
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.69 E-value=8.2e+02 Score=24.12 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhccCchHHHHHHHHHhHHHHHHHHH
Q 004782 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-------LAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL 135 (731)
Q Consensus 63 ~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~-------L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL 135 (731)
..|.+-+.+--.++.+-=..++..+..++.-+++...+... |......+..-+++|.++-.+...+.....-|
T Consensus 52 ~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555556666666666655554444 44444444444555555555555555555556
Q ss_pred HHHHHHHhcHHHHHHHHhccCHHH
Q 004782 136 DQIEGIAKVPARIEKLIAGKQYYA 159 (731)
Q Consensus 136 ~~Ie~l~~vP~kie~lis~k~yl~ 159 (731)
..=-.+-.+|+-+..|+..+....
T Consensus 132 ~~~~~~~~~P~ll~Dy~~~~~~~~ 155 (177)
T PF13870_consen 132 RQQGGLLGVPALLRDYDKTKEEVE 155 (177)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHH
Confidence 655666688999888887766544
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.44 E-value=1.3e+03 Score=26.46 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHH---H--HHHhcHHHHHHHHhccCHHH
Q 004782 85 QILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQI---E--GIAKVPARIEKLIAGKQYYA 159 (731)
Q Consensus 85 ~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~I---e--~l~~vP~kie~lis~k~yl~ 159 (731)
+|-..+.+++..+..+++++.+....|..-..+- -.+...+.++|..+..+ . -++-.|+.......-.-|+.
T Consensus 77 ~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~ 153 (420)
T COG4942 77 SLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYG 153 (420)
T ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHH
Confidence 4555566666666666666666665554333222 23333344444444332 0 23445555554444444444
Q ss_pred HH-HHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHH
Q 004782 160 AV-QLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLED 203 (731)
Q Consensus 160 A~-~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieE 203 (731)
++ .-+.+..+.+.. ....|..+|+.+..++..|...+-+-
T Consensus 154 ~l~~~~~~~i~~l~~----~~~~l~~~~~~iaaeq~~l~~~~~eq 194 (420)
T COG4942 154 ALNPARAERIDALKA----TLKQLAAVRAEIAAEQAELTTLLSEQ 194 (420)
T ss_pred HhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 223333333332 23456667777777777766555443
No 121
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.34 E-value=1.1e+03 Score=25.32 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 004782 51 VQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (731)
Q Consensus 51 ~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK 101 (731)
+..+.+.+......|+.-+...+++..++..+|.........++++....-
T Consensus 108 ~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~ 158 (264)
T cd07654 108 KEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQ 158 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777778889999999999988887777888877643
No 122
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=20.05 E-value=8.6e+02 Score=25.10 Aligned_cols=133 Identities=14% Similarity=0.234 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHh-----HHHHHH
Q 004782 58 NDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV-----TLRHII 132 (731)
Q Consensus 58 ~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~-----~~~~~l 132 (731)
++.+...|+++|..| +++.-+ .++-......|..|...++.|..+|.++++.|..-. +.++++
T Consensus 17 ~e~lk~~v~~~~~~Y-~~~vvT-----------ee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~ 84 (215)
T PF07083_consen 17 FEELKAEVDEAVEKY-KGYVVT-----------EENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELI 84 (215)
T ss_pred HHHHHHHHHHHHHHh-CCcccC-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 456677777777655 433211 244455667778888888889999999988887765 344555
Q ss_pred HHHHH-HHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHHH
Q 004782 133 SLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (731)
Q Consensus 133 ~iL~~-Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~~ 206 (731)
..++. +..|..-=..+|..-.+.+......++.+-.....= +...+.-+ +...+.+....+-. +++|+.+
T Consensus 85 ~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v-~~~~fe~~--~~~~wlnks~s~kk-~~eei~~ 155 (215)
T PF07083_consen 85 APIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGV-DPEPFERI--IKPKWLNKSYSLKK-IEEEIDD 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHhhh--cchHHhhcCCcHHH-HHHHHHH
Confidence 44443 334444444455555555555555555444333321 11222222 44555555445544 5555544
Done!