Query 004782
Match_columns 731
No_of_seqs 154 out of 193
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 94.8 0.067 2.3E-06 54.6 8.3 69 136-204 13-85 (235)
2 2z0v_A SH3-containing GRB2-lik 60.5 1.4E+02 0.0047 29.7 16.9 80 45-124 92-173 (240)
3 1zww_A SH3-containing GRB2-lik 46.2 2.4E+02 0.0082 28.2 18.3 84 46-129 109-194 (256)
4 3ghg_A Fibrinogen alpha chain; 42.7 70 0.0024 35.8 8.8 65 137-204 129-193 (562)
5 3swh_A MUNC13-1, protein UNC-1 40.7 66 0.0022 34.2 8.2 94 621-726 6-109 (341)
6 1deq_A Fibrinogen (alpha chain 35.4 3.8E+02 0.013 28.7 12.8 11 184-194 177-187 (390)
7 3ghg_A Fibrinogen alpha chain; 34.2 4E+02 0.014 29.9 13.1 15 182-196 140-154 (562)
8 3iyk_A VP5; icosahedral virus; 33.2 4.2E+02 0.014 29.5 12.9 83 60-143 110-193 (526)
9 2bez_C E2 glycoprotein; coiled 30.1 1.2E+02 0.004 25.2 6.1 36 64-99 34-73 (77)
10 3trt_A Vimentin; cytoskeleton, 27.8 2.1E+02 0.0073 23.1 7.6 14 15-28 6-19 (77)
11 1deq_A Fibrinogen (alpha chain 25.8 1.7E+02 0.0058 31.4 8.1 118 48-166 73-190 (390)
12 3qww_A SET and MYND domain-con 24.0 4.7E+02 0.016 28.2 11.8 85 67-173 330-414 (433)
13 2d2s_A Exocyst complex compone 23.8 4.8E+02 0.017 25.8 10.9 63 143-205 93-155 (235)
14 3htk_A Structural maintenance 23.5 2.5E+02 0.0085 21.5 7.8 37 68-104 20-56 (60)
15 1wer_A P120GAP; GTPase activat 22.6 3.5E+02 0.012 28.2 10.1 46 617-662 76-121 (334)
16 1x79_B RAB GTPase binding effe 21.1 3.3E+02 0.011 24.2 7.9 68 46-123 17-84 (112)
17 1deb_A APC protein, adenomatou 20.8 1.8E+02 0.0061 22.2 5.0 50 80-136 2-51 (54)
18 3mq7_A Bone marrow stromal ant 20.7 4.6E+02 0.016 23.5 8.7 75 84-160 28-106 (121)
19 3vkg_A Dynein heavy chain, cyt 20.0 9.7E+02 0.033 33.1 15.4 56 65-120 1904-1959(3245)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=94.77 E-value=0.067 Score=54.55 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=58.4
Q ss_pred HHHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCC----CCCCccHHHHHHHHHhHHHHHHHHHHHH
Q 004782 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDL 204 (731)
Q Consensus 136 ~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L----~~I~AL~dlR~~L~~q~~~L~d~LieEL 204 (731)
+.+.++...|+.|+-+|++++|.+|++++.++-..+.+-.- .+..++..++..+.+++..|.+.|++||
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l 85 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI 85 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999965221 1245577799999999999999999988
No 2
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=60.48 E-value=1.4e+02 Score=29.70 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=62.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chHHHHHH
Q 004782 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLW 122 (731)
Q Consensus 45 ~~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~-~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~-~~~L~~L~ 122 (731)
+.....+..+-+....+..........-.+.|+.-+.+|. .=+..|.+.+.++...|-.+..||..+... ..+|++..
T Consensus 92 s~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~ 171 (240)
T 2z0v_A 92 STFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAV 171 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3456677777777788888888888888889999999996 677899999999999999999999987542 45555544
Q ss_pred HH
Q 004782 123 YR 124 (731)
Q Consensus 123 ~~ 124 (731)
..
T Consensus 172 ~~ 173 (240)
T 2z0v_A 172 EK 173 (240)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 3
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=46.21 E-value=2.4e+02 Score=28.18 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccC-chHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWY 123 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~-i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~-~~~L~~L~~ 123 (731)
+....+..+.+....++.........-.+.|+.-+..|.. .+..|...+.++...|-.+..||..+... .++|.....
T Consensus 109 ~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~ 188 (256)
T 1zww_A 109 NFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALE 188 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4456777888888888888888888888889999999854 88999999999999999999999987542 455555544
Q ss_pred HHhHHH
Q 004782 124 RSVTLR 129 (731)
Q Consensus 124 ~s~~~~ 129 (731)
+-.++.
T Consensus 189 ~fe~~~ 194 (256)
T 1zww_A 189 KFDESK 194 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 4
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.70 E-value=70 Score=35.77 Aligned_cols=65 Identities=8% Similarity=0.041 Sum_probs=30.2
Q ss_pred HHHHHHhcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHH
Q 004782 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (731)
Q Consensus 137 ~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL 204 (731)
+|..|+.+...|+.+..+=+=|+.-- .-.++.+..+.=..+.-=-|+++|-..|++ |...+.-.|
T Consensus 129 QlsnIrvLQsnLedq~~kIQRLEvDI--diqirsCKgsCsr~~~~~vd~~sY~~~QKQ-LeQv~a~dL 193 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLVDMKRLEVDI--DIKIRSCRGSCSRALAREVDLKDYEDQQKQ-LEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHGGGTBSCCCCCCCCHHHHHHHHHH-HHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccccchheeecchHHHHHHHHH-HHHHhhccc
Confidence 33444444444444444322222211 123455556566666666677777555443 433333333
No 5
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=40.70 E-value=66 Score=34.21 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC--CCccccccCCccccccccccCccccchHHHHHHHHHHHHHHHHhch
Q 004782 621 GLLAFVENFVKDHLLPTMFVDYRKGVQQAISS--PAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMP 698 (731)
Q Consensus 621 ~l~~Fl~~Fv~~~FLp~l~~~~~~~~~~~~~~--~dAfk~~~~~~~~~~~~l~~~rPil~~~~~v~~~i~el~~~l~t~P 698 (731)
++..||..|| ..||....+.....++.|++- .++|.+... .. +-- -|++.+..++.+.+..+..+-
T Consensus 6 ~~~~wF~~~V-~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~--~~--------~hS-sSvvDif~~~~Q~~~~~~~L~ 73 (341)
T 3swh_A 6 EYPAWFEPFV-IQWLDENEEVSRDFLHGALERDKKDGFQQTSE--HA--------LFS-CSVVDVFSQLNQSFEIIKKLE 73 (341)
T ss_dssp ---CCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSS--SC--------CSC-THHHHHHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCcccccc--Cc--------ccc-chHHHHHHHHHHHHHHHHHCC
Confidence 3555667776 346777888899999999872 333332211 10 011 567889999999988886653
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004782 699 --------KFAADLVKYVQTFLERTYERCRTSYMET 726 (731)
Q Consensus 699 --------~y~~e~~~lv~t~L~~y~e~C~~~y~~~ 726 (731)
.|-..|.+.||..+..|-+.....|...
T Consensus 74 WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~ 109 (341)
T 3swh_A 74 CPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASY 109 (341)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778899999999999999999888764
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.39 E-value=3.8e+02 Score=28.74 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=7.8
Q ss_pred HHHHHHHHhHH
Q 004782 184 DVRSELTKLRG 194 (731)
Q Consensus 184 dlR~~L~~q~~ 194 (731)
|++.|-..|++
T Consensus 177 D~e~ye~qqKQ 187 (390)
T 1deq_A 177 DLEDYKNQQKQ 187 (390)
T ss_pred cHHHHHHHHHH
Confidence 67777776666
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.25 E-value=4e+02 Score=29.86 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=9.1
Q ss_pred cHHHHHHHHHhHHHH
Q 004782 182 LQDVRSELTKLRGVL 196 (731)
Q Consensus 182 L~dlR~~L~~q~~~L 196 (731)
|.++|.+++.+|..+
T Consensus 140 Ledq~~kIQRLEvDI 154 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666555
No 8
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=33.17 E-value=4.2e+02 Score=29.48 Aligned_cols=83 Identities=6% Similarity=-0.045 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHH
Q 004782 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA-ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQI 138 (731)
Q Consensus 60 ~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq-~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~I 138 (731)
.+-...+..|-+.+...-..|..|.+....+.+.. +.+..|.+.|....+.+...+..|.+|...-++ ....+.-|+-
T Consensus 110 ~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~k-E~~~Rt~dE~ 188 (526)
T 3iyk_A 110 LVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQK-EIGERTHAET 188 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhcHHHH
Confidence 33444455566666666677777777777776644 488899999999999999999999988754433 4444444444
Q ss_pred HHHHh
Q 004782 139 EGIAK 143 (731)
Q Consensus 139 e~l~~ 143 (731)
.-|..
T Consensus 189 ~mi~~ 193 (526)
T 3iyk_A 189 VMVKE 193 (526)
T ss_pred HHHHH
Confidence 33333
No 9
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=30.06 E-value=1.2e+02 Score=25.24 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=21.9
Q ss_pred HHHHHHHHhHHHHHHHhH----hhHHHHHHHHHHHHHHHH
Q 004782 64 VVDEVVHAYHTGFNKAIQ----NYSQILRLFSESAESIKE 99 (731)
Q Consensus 64 ~L~~vV~~h~q~Fn~sI~----sy~~i~~~i~~Sq~~i~~ 99 (731)
.++.||+.|-+..+.-+. +|+.|.+.|.+-=.|+..
T Consensus 34 kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~ 73 (77)
T 2bez_C 34 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDK 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 356667777777776664 455565555555444443
No 10
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.81 E-value=2.1e+02 Score=23.06 Aligned_cols=14 Identities=0% Similarity=0.045 Sum_probs=9.2
Q ss_pred HHHHHHHHhHhhcC
Q 004782 15 YLREELARIEVSWV 28 (731)
Q Consensus 15 ~l~~~l~~I~~ew~ 28 (731)
.|..+|..|+.+|.
T Consensus 6 DL~~il~eiRaQYE 19 (77)
T 3trt_A 6 DCTAAMRDVRQQYE 19 (77)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 45666677777776
No 11
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.78 E-value=1.7e+02 Score=31.45 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhH
Q 004782 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (731)
Q Consensus 48 e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (731)
...+.++.+.+..+...+..+.+.--+.|..+-.+=..+.+...+-+.+|.-||+++..--..|..-+..|+.+..+-++
T Consensus 73 ~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 73 RDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444555544444444444455556666666666655544555555555555444444
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHhccCHHHHHHHHHH
Q 004782 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQ 166 (731)
Q Consensus 128 ~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~ 166 (731)
...-|++= .=-+-..++-.++.-|.-+.|..-.+.|.+
T Consensus 153 LE~~Id~c-~~~C~~sC~~~l~~~vD~e~ye~qqKQL~q 190 (390)
T 1deq_A 153 LEVDIDIK-IRSCKGSCSRALEHKVDLEDYKNQQKQLEQ 190 (390)
T ss_pred HHHHHHHH-hcccccccchhhhhhccHHHHHHHHHHHHh
Confidence 44333111 112334566667766677777665555543
No 12
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=23.99 E-value=4.7e+02 Score=28.19 Aligned_cols=85 Identities=6% Similarity=0.009 Sum_probs=55.6
Q ss_pred HHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHHHHHHHHhcHH
Q 004782 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (731)
Q Consensus 67 ~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~~Ie~l~~vP~ 146 (731)
.+...+|-....++.+-..+....++-.+-+.-.++.|+--++.++...+++-..+. .
T Consensus 330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~----------------------n 387 (433)
T 3qww_A 330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL----------------------K 387 (433)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH----------------------H
T ss_pred CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH----------------------H
Confidence 344555666666666666666666666666666666666666666666665433221 1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHcc
Q 004782 147 RIEKLIAGKQYYAAVQLHAQSALMLER 173 (731)
Q Consensus 147 kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (731)
-=..+...++|.+|..++.+|+.+...
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 122356788999999999999999876
No 13
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.77 E-value=4.8e+02 Score=25.80 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=47.5
Q ss_pred hcHHHHHHHHhccCHHHHHHHHHHHHHHHcccCCCCCCccHHHHHHHHHhHHHHHHHHHHHHH
Q 004782 143 KVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (731)
Q Consensus 143 ~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~AL~dlR~~L~~q~~~L~d~LieEL~ 205 (731)
++-.-+..|+.=++-..|.+++.++....=+..+.+++.-.++-.|........|..|.+-..
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~ 155 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVE 155 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555788899999988888777778888999999999999999999988876543
No 14
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.50 E-value=2.5e+02 Score=21.45 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 004782 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (731)
Q Consensus 68 vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L 104 (731)
.+..+-..|..+-..|..+...+...++.|..++..+
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555443
No 15
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=22.56 E-value=3.5e+02 Score=28.16 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=37.8
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCccccccCC
Q 004782 617 LGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHT 662 (731)
Q Consensus 617 ~~~~~l~~Fl~~Fv~~~FLp~l~~~~~~~~~~~~~~~dAfk~~~~~ 662 (731)
.+++.+...++.|++..--+.|++.+...+.+.+.+++.|..++..
T Consensus 76 R~Ns~~tkll~~y~r~~g~~yL~~~L~~~i~~i~~~~~~~EiDP~k 121 (334)
T 1wer_A 76 RATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSK 121 (334)
T ss_dssp CSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeeCHHh
Confidence 3556678899999998888889999999999999888877666543
No 16
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.08 E-value=3.3e+02 Score=24.19 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 004782 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (731)
Q Consensus 46 ~~e~~~~~l~~~~~~l~~~L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~ 123 (731)
.....+.+..+..+.++..+++...+|....- .+...+..|...+..|++....|+.... ..|.+|-.
T Consensus 17 ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~-------~L~~~~q~sE~~L~~Lqq~fsq~q~~vq---~qL~~Lt~ 84 (112)
T 1x79_B 17 QANDQLEKTMKDKQELEDFIKQSSEDSSHQIS-------ALVLRAQASEILLEELQQGLSQAKRDVQ---EQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44557777778888889999999999976654 6777888888888888888888887664 34444433
No 17
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.79 E-value=1.8e+02 Score=22.22 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=35.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHhHHHHHHHHHH
Q 004782 80 IQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (731)
Q Consensus 80 I~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~l~iL~ 136 (731)
+++|.+++..+ ..+|..=..-+..|..++..|-+|-.+....|+|+..|.
T Consensus 2 ~asYdQL~~QV-------e~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 2 AASYDQLLKQV-------EALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp CCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH-------HHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 46777777654 445555555556666778889999988888888887663
No 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.71 E-value=4.6e+02 Score=23.47 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH----HhHHHHHHHHHHHHHHHHhcHHHHHHHHhccCHHH
Q 004782 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR----SVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYA 159 (731)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~L~~~----s~~~~~~l~iL~~Ie~l~~vP~kie~lis~k~yl~ 159 (731)
+-+...++.+|+....-...-..|+.-...-++.|.+.-.. -.+...=|..|++ .|+..-.++|.+-++.+++.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq--~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNH--KLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchhhh
Q ss_pred H
Q 004782 160 A 160 (731)
Q Consensus 160 A 160 (731)
+
T Consensus 106 ~ 106 (121)
T 3mq7_A 106 V 106 (121)
T ss_dssp H
T ss_pred h
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.04 E-value=9.7e+02 Score=33.12 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred HHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHH
Q 004782 65 VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120 (731)
Q Consensus 65 L~~vV~~h~q~Fn~sI~sy~~i~~~i~~Sq~~i~~lK~~L~~~k~~L~~~~~~L~~ 120 (731)
-+.+..+..++....+..|..=++.|.++.+.|..||+.|++-+..|..++.+-.+
T Consensus 1904 y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~ 1959 (3245)
T 3vkg_A 1904 VVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ 1959 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777778899999999999999999988888776655433
Done!