BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004783
(730 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q923Q2|STA13_MOUSE StAR-related lipid transfer protein 13 OS=Mus musculus GN=Stard13
PE=1 SV=5
Length = 1113
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 212 RSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVIL 270
R +WD F + VVE LD T+ I++ + + +P RD L+ R W+ + G ++
Sbjct: 974 RHLWDEDFVQWKVVERLDKQTE-IYQYVLNSMVP--HPSRDFLVLRTWKTDLPKGMCTLV 1030
Query: 271 YHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 317
SV +++ + G VRA + Y+I P G KS + H+ ID K
Sbjct: 1031 SLSVEYEEA-QLMGGVRAVVMDSQYLIEPCGSG-KSRLTHICRIDLK 1075
>sp|Q9Y3M8|STA13_HUMAN StAR-related lipid transfer protein 13 OS=Homo sapiens GN=STARD13
PE=1 SV=2
Length = 1113
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 212 RSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVIL 270
R +WD F + VVE LD T+ I++ + + P RD ++ R W+ + G ++
Sbjct: 974 RHLWDEDFVQWKVVETLDRQTE-IYQYVLNSMAP--HPSRDFVVLRTWKTDLPKGMCTLV 1030
Query: 271 YHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 317
SV H++ + G VRA + Y+I P G KS + H+ ID K
Sbjct: 1031 SLSVEHEEA-QLLGGVRAVVMDSQYLIEPCGSG-KSRLTHICRIDLK 1075
>sp|Q9JMD3|PCTL_MOUSE PCTP-like protein OS=Mus musculus GN=Stard10 PE=1 SV=1
Length = 291
Score = 39.7 bits (91), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 195 DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLL 254
D +E ++ L + R WD + L + D+ + YS P +K RD++
Sbjct: 76 DVPAETLYDVLHDI-EYRKKWDSNVIETFDIARLTVNADVGY---YSWRCPKPLKNRDVI 131
Query: 255 LRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 313
R W Y+I+ +SV H K P +K VRA GY+I + G KS V LA
Sbjct: 132 TLRSWLPMG-ADYIIMNYSVKHPKYPPRKDLVRAVSIQTGYLI--QSTGPKSCVITYLA 187
>sp|Q9Y365|PCTL_HUMAN PCTP-like protein OS=Homo sapiens GN=STARD10 PE=1 SV=2
Length = 291
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 195 DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLL 254
D +E ++ L + R WD + L + D+ + YS P +K RD++
Sbjct: 76 DVPAETLYDVLHDI-EYRKKWDSNVIETFDIARLTVNADVGY---YSWRCPKPLKNRDVI 131
Query: 255 LRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 313
R W Y+I+ +SV H K P +K VRA GY+I + G KS V LA
Sbjct: 132 TLRSWLPMG-ADYIIMNYSVKHPKYPPRKDLVRAVSIQTGYLI--QSTGPKSCVITYLA 187
>sp|B4S4U8|RUVA_PROA2 Holliday junction ATP-dependent DNA helicase RuvA
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=ruvA PE=3 SV=1
Length = 200
Score = 35.8 bits (81), Expect = 1.1, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 139 LCSGTHMEQVTADVIAPSPWTIFGC-----QNGLRLFKEGKDRGSRGKWDDHPAIMAVGV 193
+ SG +E++ ++A P T+FG + R+ E +DR + + G
Sbjct: 89 ILSGLPVEEIQEAIMANKPETLFGISGVGKKTAARIILELRDRILKLQQTRPGKTAGAGS 148
Query: 194 VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQL 239
V SE Q LM+LG SR+ R + G DI+ + L
Sbjct: 149 VASLSEDALQALMTLGFSRASAQQAVTRALLSAENPGVEDIVREAL 194
>sp|F7EL49|AF1L1_XENTR Actin filament-associated protein 1-like 1 OS=Xenopus tropicalis
GN=afap1l1 PE=3 SV=1
Length = 758
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 13 EGWLHLIRSNRIGLQYSRKRYF--------LLEDHFLKSFKSVPHSKNEDPVRSAIIDSC 64
E LHL+R +RI RK+ F L++D+ L +KS SK+ P + C
Sbjct: 208 EASLHLVRDSRICAFLLRKKRFGQWAKQLTLIKDNKLLCYKS---SKDRQPHLEIPLALC 264
Query: 65 --IRVTDNGRESIHR-----------KLGASSPEEAAKWIHSLQEAALKGGPHQGVGDHI 111
V +GR H L S E+A +W+ ++E P G
Sbjct: 265 NVAYVPKDGRRKKHELRFSLPNGEMLVLAVQSREQAEEWLRVIKEVI---SPSTG----- 316
Query: 112 GCPNSPWESFRLSGSSRASHTKSID 136
P SP RL R SH K+ D
Sbjct: 317 SSPASPALRHRLDLDKRLSHDKTSD 341
>sp|Q8Z3C0|TATB_SALTI Sec-independent protein translocase protein TatB OS=Salmonella
typhi GN=tatB PE=3 SV=1
Length = 182
Score = 33.5 bits (75), Expect = 6.6, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 14 GWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNED--PVRSAIIDSCIRVTDNG 71
GW+ +RS +Q + L++ F S K V + E+ P A +D +
Sbjct: 34 GWIRALRSLATTVQNELTQELKLQE-FQDSLKKVEKASLENLTPELKASMDELRQAA--- 89
Query: 72 RESIHRKLGASSPEEAAKWIHSLQEAALKGGP--HQGV 107
ES+ R A+ PE+A+ H++ +KG H+GV
Sbjct: 90 -ESMKRTYSANDPEQASDEAHTIHNPVVKGNETQHEGV 126
>sp|P57048|TATB_SALTY Sec-independent protein translocase protein TatB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=tatB PE=3 SV=2
Length = 182
Score = 33.5 bits (75), Expect = 6.8, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 14 GWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNED--PVRSAIIDSCIRVTDNG 71
GW+ +RS +Q + L++ F S K V + E+ P A +D +
Sbjct: 34 GWIRALRSLATTVQNELTQELKLQE-FQDSLKKVEKASLENLTPELKASMDELRQAA--- 89
Query: 72 RESIHRKLGASSPEEAAKWIHSLQEAALKGGP--HQGV 107
ES+ R A+ PE+A+ H++ +KG H+GV
Sbjct: 90 -ESMKRTYSANDPEQASDEAHTIHNPVVKGNETQHEGV 126
>sp|Q5PKQ9|TATB_SALPA Sec-independent protein translocase protein TatB OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=tatB PE=3
SV=1
Length = 182
Score = 33.5 bits (75), Expect = 6.8, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 14 GWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNED--PVRSAIIDSCIRVTDNG 71
GW+ +RS +Q + L++ F S K V + E+ P A +D +
Sbjct: 34 GWIRALRSLATTVQNELTQELKLQE-FQDSLKKVEKASLENLTPELKASMDELRQAA--- 89
Query: 72 RESIHRKLGASSPEEAAKWIHSLQEAALKGGP--HQGV 107
ES+ R A+ PE+A+ H++ +KG H+GV
Sbjct: 90 -ESMKRTYSANDPEQASDEAHTIHNPVVKGNETQHEGV 126
>sp|Q57HN4|TATB_SALCH Sec-independent protein translocase protein TatB OS=Salmonella
choleraesuis (strain SC-B67) GN=tatB PE=3 SV=1
Length = 182
Score = 33.5 bits (75), Expect = 6.8, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 14 GWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNED--PVRSAIIDSCIRVTDNG 71
GW+ +RS +Q + L++ F S K V + E+ P A +D +
Sbjct: 34 GWIRALRSLATTVQNELTQELKLQE-FQDSLKKVEKASLENLTPELKASMDELRQAA--- 89
Query: 72 RESIHRKLGASSPEEAAKWIHSLQEAALKGGP--HQGV 107
ES+ R A+ PE+A+ H++ +KG H+GV
Sbjct: 90 -ESMKRTYSANDPEQASDEAHTIHNPVVKGNETQHEGV 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,815,854
Number of Sequences: 539616
Number of extensions: 12522977
Number of successful extensions: 25965
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 25963
Number of HSP's gapped (non-prelim): 19
length of query: 730
length of database: 191,569,459
effective HSP length: 125
effective length of query: 605
effective length of database: 124,117,459
effective search space: 75091062695
effective search space used: 75091062695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)