Query 004783
Match_columns 730
No_of_seqs 316 out of 799
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:50:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 2E-174 4E-179 1467.6 61.7 661 8-719 2-717 (719)
2 PF07059 DUF1336: Protein of u 100.0 3.8E-74 8.2E-79 588.9 18.2 207 500-707 1-227 (227)
3 cd08904 START_STARD6-like Lipi 100.0 4.9E-34 1.1E-38 289.0 22.7 183 154-346 20-203 (204)
4 cd08868 START_STARD1_3_like Ch 100.0 2E-33 4.3E-38 284.6 24.5 186 151-348 19-207 (208)
5 cd08906 START_STARD3-like Chol 100.0 6.6E-32 1.4E-36 274.7 22.0 185 151-348 20-208 (209)
6 cd08869 START_RhoGAP C-termina 100.0 1.3E-31 2.9E-36 269.9 23.0 178 154-348 17-196 (197)
7 cd08903 START_STARD5-like Lipi 100.0 1.8E-31 3.9E-36 271.2 23.2 184 154-347 20-206 (208)
8 cd08867 START_STARD4_5_6-like 100.0 5E-31 1.1E-35 266.8 22.6 182 155-346 21-205 (206)
9 cd08873 START_STARD14_15-like 100.0 7.5E-31 1.6E-35 270.2 21.7 180 126-318 21-206 (235)
10 cd08871 START_STARD10-like Lip 100.0 1E-30 2.3E-35 267.3 21.8 180 153-347 20-201 (222)
11 cd08914 START_STARD15-like Lip 100.0 6.1E-31 1.3E-35 270.4 20.0 182 130-326 26-214 (236)
12 cd08874 START_STARD9-like C-te 100.0 9.6E-31 2.1E-35 265.3 21.0 186 145-347 11-204 (205)
13 cd08902 START_STARD4-like Lipi 100.0 1.8E-30 3.8E-35 259.7 19.8 181 153-346 20-201 (202)
14 cd08909 START_STARD13-like C-t 100.0 2.1E-30 4.5E-35 262.3 20.3 175 156-347 27-203 (205)
15 cd08905 START_STARD1-like Chol 100.0 2.5E-30 5.3E-35 263.0 20.2 182 154-348 23-208 (209)
16 smart00234 START in StAR and p 100.0 9.5E-30 2.1E-34 255.2 23.3 184 151-347 14-201 (206)
17 cd08872 START_STARD11-like Cer 100.0 7E-30 1.5E-34 264.1 21.2 181 156-349 26-227 (235)
18 cd08911 START_STARD7-like Lipi 100.0 1.6E-29 3.6E-34 256.6 21.6 180 154-346 19-204 (207)
19 cd08913 START_STARD14-like Lip 100.0 1.9E-29 4.1E-34 261.2 20.0 193 128-333 27-226 (240)
20 cd08910 START_STARD2-like Lipi 100.0 1.4E-28 3E-33 250.0 18.8 178 153-346 22-204 (207)
21 cd08870 START_STARD2_7-like Li 100.0 1.4E-27 3E-32 242.6 21.5 178 156-347 22-207 (209)
22 PF01852 START: START domain; 100.0 3.1E-27 6.8E-32 236.4 23.2 187 152-350 15-204 (206)
23 cd08907 START_STARD8-like C-te 100.0 6.7E-28 1.5E-32 241.7 18.0 177 154-347 25-203 (205)
24 cd00177 START Lipid-binding ST 100.0 7E-27 1.5E-31 229.0 22.8 167 156-333 15-182 (193)
25 cd08908 START_STARD12-like C-t 100.0 2.7E-27 5.8E-32 239.7 19.3 172 157-347 28-202 (204)
26 cd08876 START_1 Uncharacterize 99.9 1.7E-26 3.6E-31 230.4 22.1 178 154-346 15-194 (195)
27 cd08877 START_2 Uncharacterize 99.9 1.5E-25 3.3E-30 228.2 17.4 186 148-347 14-213 (215)
28 KOG2761 START domain-containin 99.9 7.7E-22 1.7E-26 198.8 18.2 186 152-347 25-217 (219)
29 KOG1739 Serine/threonine prote 99.5 4.5E-14 9.8E-19 154.2 6.9 170 145-322 392-578 (611)
30 cd08875 START_ArGLABRA2_like C 99.5 1.2E-12 2.5E-17 134.8 16.7 132 184-320 58-200 (229)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.4 6.9E-12 1.5E-16 128.1 13.7 131 211-346 64-206 (208)
32 cd01260 PH_CNK Connector enhan 99.3 1.1E-11 2.4E-16 110.8 7.9 84 11-97 1-96 (96)
33 cd01251 PH_centaurin_alpha Cen 99.2 3E-11 6.4E-16 110.3 8.1 83 12-99 1-101 (103)
34 cd01246 PH_oxysterol_bp Oxyste 99.2 8E-11 1.7E-15 102.7 8.2 82 12-97 1-91 (91)
35 cd01238 PH_Tec Tec pleckstrin 99.1 2.7E-10 5.8E-15 104.5 8.3 84 12-96 2-105 (106)
36 cd01265 PH_PARIS-1 PARIS-1 ple 99.1 3.6E-10 7.7E-15 101.7 8.0 82 12-97 1-93 (95)
37 cd01247 PH_GPBP Goodpasture an 99.1 5.5E-10 1.2E-14 99.9 8.5 81 12-96 1-90 (91)
38 cd01252 PH_cytohesin Cytohesin 99.0 1.9E-09 4.1E-14 101.4 9.2 84 11-100 1-115 (125)
39 cd01233 Unc104 Unc-104 pleckst 99.0 1.8E-09 3.9E-14 97.9 8.3 83 10-98 2-98 (100)
40 cd01241 PH_Akt Akt pleckstrin 98.9 2.4E-09 5.2E-14 97.5 7.8 85 10-97 1-101 (102)
41 cd01235 PH_SETbf Set binding f 98.9 3E-09 6.5E-14 95.4 8.2 81 12-98 1-101 (101)
42 cd01257 PH_IRS Insulin recepto 98.9 2.6E-09 5.7E-14 97.5 7.7 80 10-96 2-100 (101)
43 cd01266 PH_Gab Gab (Grb2-assoc 98.9 3.1E-09 6.7E-14 97.6 7.5 82 13-97 2-107 (108)
44 PF00169 PH: PH domain; Inter 98.9 4E-09 8.6E-14 92.2 7.9 85 11-98 2-103 (104)
45 cd01236 PH_outspread Outspread 98.9 4.3E-09 9.2E-14 96.6 7.6 82 12-95 1-101 (104)
46 cd01264 PH_melted Melted pleck 98.9 4.8E-09 1E-13 95.7 7.6 83 12-97 2-100 (101)
47 cd01250 PH_centaurin Centaurin 98.8 7.5E-09 1.6E-13 90.8 7.5 83 12-97 1-94 (94)
48 smart00233 PH Pleckstrin homol 98.8 1.7E-08 3.6E-13 86.5 8.3 86 11-98 2-101 (102)
49 cd07813 COQ10p_like Coenzyme Q 98.8 5.3E-08 1.1E-12 91.7 12.0 134 189-347 2-136 (138)
50 cd01263 PH_anillin Anillin Ple 98.8 1.7E-08 3.6E-13 95.2 7.1 87 10-97 1-122 (122)
51 cd08866 SRPBCC_11 Ligand-bindi 98.6 1.7E-06 3.7E-11 81.5 14.8 141 189-347 2-143 (144)
52 cd01254 PH_PLD Phospholipase D 98.5 3.2E-07 7E-12 86.3 6.9 83 12-97 1-121 (121)
53 cd01237 Unc112 Unc-112 pleckst 98.4 2.8E-07 6E-12 84.6 5.4 77 22-99 13-104 (106)
54 cd01219 PH_FGD FGD (faciogenit 98.4 8.7E-07 1.9E-11 80.6 8.7 87 11-100 3-101 (101)
55 PF11274 DUF3074: Protein of u 98.4 6.7E-06 1.5E-10 82.9 15.6 126 195-324 13-164 (184)
56 KOG0930 Guanine nucleotide exc 98.4 4.9E-07 1.1E-11 94.4 6.9 85 10-99 260-376 (395)
57 cd01244 PH_RasGAP_CG9209 RAS_G 98.4 1E-06 2.2E-11 80.2 7.3 70 23-97 16-98 (98)
58 PF15409 PH_8: Pleckstrin homo 98.3 7.3E-07 1.6E-11 79.6 5.9 80 14-97 1-88 (89)
59 cd01245 PH_RasGAP_CG5898 RAS G 98.3 6.1E-07 1.3E-11 81.6 5.0 78 13-96 2-97 (98)
60 cd07819 SRPBCC_2 Ligand-bindin 98.3 1.4E-05 3E-10 74.3 13.8 134 188-345 4-139 (140)
61 cd01256 PH_dynamin Dynamin ple 98.3 1.7E-06 3.8E-11 77.9 7.2 83 11-97 2-104 (110)
62 PF15413 PH_11: Pleckstrin hom 98.3 1.1E-06 2.3E-11 81.7 6.1 84 12-97 1-112 (112)
63 cd00900 PH-like Pleckstrin hom 98.3 1.6E-06 3.4E-11 74.1 6.7 83 12-97 1-99 (99)
64 cd01253 PH_beta_spectrin Beta- 98.2 3.3E-06 7.2E-11 76.5 8.0 85 12-97 1-104 (104)
65 cd00821 PH Pleckstrin homology 98.2 2.3E-06 5.1E-11 72.5 6.2 84 12-97 1-96 (96)
66 cd01220 PH_CDEP Chondrocyte-de 98.2 5.3E-06 1.1E-10 75.6 7.5 84 11-99 3-98 (99)
67 cd05018 CoxG Carbon monoxide d 98.0 8.4E-05 1.8E-09 69.3 13.3 140 188-346 3-143 (144)
68 cd08861 OtcD1_ARO-CYC_like N-t 98.0 0.00017 3.8E-09 67.7 13.6 137 190-347 3-141 (142)
69 PF03364 Polyketide_cyc: Polyk 97.8 0.00037 8.1E-09 64.5 13.5 109 194-323 1-112 (130)
70 cd01230 PH_EFA6 EFA6 Pleckstri 97.8 0.00011 2.3E-09 69.2 8.6 88 12-99 2-112 (117)
71 cd07817 SRPBCC_8 Ligand-bindin 97.7 0.0016 3.4E-08 60.5 15.0 135 188-347 2-138 (139)
72 cd07821 PYR_PYL_RCAR_like Pyra 97.6 0.0018 4E-08 59.6 14.8 138 187-346 2-139 (140)
73 cd08860 TcmN_ARO-CYC_like N-te 97.6 0.0026 5.7E-08 61.7 15.8 137 190-348 5-144 (146)
74 PRK10724 hypothetical protein; 97.5 0.0029 6.3E-08 62.4 14.6 117 184-322 13-129 (158)
75 PF10604 Polyketide_cyc2: Poly 97.2 0.038 8.2E-07 50.9 18.4 134 188-346 4-138 (139)
76 KOG0690 Serine/threonine prote 97.1 0.00039 8.4E-09 75.2 3.8 87 9-99 14-117 (516)
77 cd08865 SRPBCC_10 Ligand-bindi 96.9 0.023 4.9E-07 52.2 13.7 134 190-347 3-139 (140)
78 cd01234 PH_CADPS CADPS (Ca2+-d 96.8 0.0015 3.2E-08 59.9 4.3 81 12-98 4-110 (117)
79 cd07824 SRPBCC_6 Ligand-bindin 96.6 0.086 1.9E-06 50.3 15.1 109 188-318 3-113 (146)
80 cd07823 SRPBCC_5 Ligand-bindin 96.5 0.061 1.3E-06 51.3 13.7 141 189-347 2-145 (146)
81 cd07812 SRPBCC START/RHO_alpha 96.5 0.12 2.6E-06 45.9 14.7 114 189-321 2-115 (141)
82 KOG2200 Tumour suppressor prot 96.3 0.00077 1.7E-08 77.1 -0.9 89 246-347 574-663 (674)
83 PF15410 PH_9: Pleckstrin homo 96.3 0.012 2.6E-07 55.3 7.1 87 12-98 2-118 (119)
84 cd01239 PH_PKD Protein kinase 96.2 0.012 2.5E-07 55.2 6.2 46 12-60 2-49 (117)
85 PF12814 Mcp5_PH: Meiotic cell 95.9 0.036 7.7E-07 52.5 8.5 88 12-99 11-122 (123)
86 cd01218 PH_phafin2 Phafin2 Pl 95.9 0.032 7E-07 51.5 7.8 82 11-100 5-100 (104)
87 cd08862 SRPBCC_Smu440-like Lig 95.7 0.52 1.1E-05 43.5 15.2 40 188-228 3-42 (138)
88 cd01259 PH_Apbb1ip Apbb1ip (Am 95.7 0.017 3.7E-07 53.8 5.0 85 11-98 1-108 (114)
89 cd01261 PH_SOS Son of Sevenles 95.5 0.042 9.2E-07 51.4 7.1 86 11-99 5-110 (112)
90 cd07818 SRPBCC_1 Ligand-bindin 95.5 0.46 9.9E-06 45.0 14.2 38 187-225 3-40 (150)
91 KOG3640 Actin binding protein 95.4 0.02 4.3E-07 68.8 5.3 94 6-100 986-1108(1116)
92 cd07822 SRPBCC_4 Ligand-bindin 95.2 1 2.2E-05 41.4 15.4 107 188-313 2-108 (141)
93 PF06240 COXG: Carbon monoxide 94.8 1.3 2.9E-05 42.2 15.3 128 190-336 1-128 (140)
94 PTZ00267 NIMA-related protein 94.1 0.069 1.5E-06 61.0 5.6 88 7-98 374-476 (478)
95 cd01243 PH_MRCK MRCK (myotonic 93.7 0.24 5.2E-06 46.9 7.3 87 10-97 2-118 (122)
96 cd01224 PH_Collybistin Collybi 93.3 0.36 7.8E-06 45.1 7.8 82 12-96 4-105 (109)
97 cd07825 SRPBCC_7 Ligand-bindin 93.3 4.6 0.0001 37.7 15.6 30 188-218 2-31 (144)
98 COG2867 Oligoketide cyclase/li 92.8 0.76 1.7E-05 44.9 9.5 116 186-322 2-117 (146)
99 KOG1090 Predicted dual-specifi 92.2 0.11 2.4E-06 62.9 3.4 81 10-98 1634-1731(1732)
100 PLN02866 phospholipase D 92.1 0.44 9.5E-06 59.1 8.4 87 11-100 183-309 (1068)
101 PF15408 PH_7: Pleckstrin homo 91.9 0.095 2.1E-06 46.7 1.9 78 13-95 1-94 (104)
102 cd07814 SRPBCC_CalC_Aha1-like 91.6 5 0.00011 36.8 13.3 137 188-347 2-138 (139)
103 cd01242 PH_ROK Rok (Rho- assoc 91.4 0.89 1.9E-05 42.5 7.8 86 11-98 1-110 (112)
104 cd07820 SRPBCC_3 Ligand-bindin 90.5 7 0.00015 36.7 13.3 108 190-318 3-113 (137)
105 cd07816 Bet_v1-like Ligand-bin 90.2 14 0.00031 35.6 15.4 119 188-319 3-122 (148)
106 COG5637 Predicted integral mem 89.1 8.4 0.00018 39.1 12.9 137 188-348 72-210 (217)
107 cd01258 PH_syntrophin Syntroph 89.1 0.4 8.8E-06 44.7 3.6 84 13-96 2-107 (108)
108 cd01249 PH_oligophrenin Oligop 86.8 2.5 5.5E-05 39.2 7.2 82 12-95 1-102 (104)
109 COG3427 Carbon monoxide dehydr 86.2 15 0.00033 36.1 12.6 117 188-325 3-121 (146)
110 cd01222 PH_clg Clg (common-sit 85.7 3.3 7.1E-05 37.9 7.3 78 12-99 6-96 (97)
111 PF14593 PH_3: PH domain; PDB: 85.6 2.1 4.6E-05 39.7 6.1 81 10-100 13-101 (104)
112 KOG3845 MLN, STAR and related 85.5 0.18 3.8E-06 53.3 -1.1 138 158-303 27-164 (241)
113 KOG2059 Ras GTPase-activating 84.4 0.75 1.6E-05 54.5 3.1 84 11-99 566-665 (800)
114 cd01221 PH_ephexin Ephexin Ple 83.0 4 8.6E-05 39.1 6.9 78 12-95 5-119 (125)
115 cd01223 PH_Vav Vav pleckstrin 80.9 3.4 7.3E-05 39.1 5.4 72 29-100 20-113 (116)
116 cd01225 PH_Cool_Pix Cool (clon 80.2 3.4 7.4E-05 38.7 5.2 68 29-96 28-107 (111)
117 KOG4424 Predicted Rho/Rac guan 79.1 2.7 5.9E-05 49.1 5.0 86 12-100 274-371 (623)
118 cd08899 SRPBCC_CalC_Aha1-like_ 78.5 35 0.00075 33.1 12.0 32 185-217 10-41 (157)
119 KOG1739 Serine/threonine prote 67.6 3.9 8.5E-05 46.9 2.7 89 12-100 20-118 (611)
120 KOG3751 Growth factor receptor 58.7 14 0.0003 43.1 4.9 85 8-98 315-424 (622)
121 KOG1117 Rho- and Arf-GTPase ac 52.9 12 0.00026 45.8 3.4 72 26-97 1048-1130(1186)
122 KOG1737 Oxysterol-binding prot 51.4 10 0.00022 46.4 2.6 82 12-98 79-168 (799)
123 KOG1738 Membrane-associated gu 47.2 5.6 0.00012 47.0 -0.4 39 11-49 563-601 (638)
124 cd08893 SRPBCC_CalC_Aha1-like_ 43.5 2.5E+02 0.0055 25.4 10.7 30 188-218 2-31 (136)
125 TIGR01599 PYST-A Plasmodium yo 42.7 4.2E+02 0.0091 27.7 19.1 120 185-311 58-208 (208)
126 cd01240 PH_beta-ARK Beta adren 40.0 16 0.00035 34.4 1.4 86 9-99 2-99 (116)
127 PF11687 DUF3284: Domain of un 37.6 3.2E+02 0.0069 25.7 9.9 106 188-322 1-108 (120)
128 KOG1451 Oligophrenin-1 and rel 33.6 54 0.0012 39.0 4.6 90 6-97 261-366 (812)
129 cd08895 SRPBCC_CalC_Aha1-like_ 33.5 4.1E+02 0.009 25.0 17.2 28 189-217 3-30 (146)
130 KOG1117 Rho- and Arf-GTPase ac 32.9 37 0.00079 41.9 3.2 83 7-100 189-281 (1186)
131 COG3832 Uncharacterized conser 32.2 4E+02 0.0087 25.7 9.9 32 185-217 7-38 (149)
132 cd08898 SRPBCC_CalC_Aha1-like_ 31.1 43 0.00094 31.0 2.9 31 188-219 3-33 (145)
133 KOG3543 Ca2+-dependent activat 30.8 20 0.00043 42.5 0.6 82 12-99 466-566 (1218)
134 KOG0248 Cytoplasmic protein Ma 29.3 44 0.00095 40.3 3.1 84 12-99 251-342 (936)
135 cd01248 PH_PLC Phospholipase C 29.1 76 0.0017 29.3 4.1 79 14-96 10-114 (115)
136 PF14784 ECIST_Cterm: C-termin 27.8 1E+02 0.0022 29.8 4.7 19 78-96 93-111 (126)
137 cd01262 PH_PDK1 3-Phosphoinosi 23.7 1.3E+02 0.0029 27.4 4.4 68 24-97 11-87 (89)
138 cd08894 SRPBCC_CalC_Aha1-like_ 23.1 6.2E+02 0.013 23.6 13.3 28 188-216 2-29 (139)
139 KOG0521 Putative GTPase activa 23.1 48 0.001 41.1 2.0 84 12-100 276-370 (785)
140 PF08327 AHSA1: Activator of H 22.7 5.4E+02 0.012 22.8 14.1 20 195-215 1-20 (124)
141 cd01226 PH_exo84 Exocyst compl 22.2 83 0.0018 29.2 2.9 85 11-99 3-99 (100)
142 KOG3549 Syntrophins (type gamm 21.7 76 0.0016 35.5 2.9 44 6-49 277-320 (505)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.1e-174 Score=1467.56 Aligned_cols=661 Identities=35% Similarity=0.612 Sum_probs=589.1
Q ss_pred cccccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEeccccceecc----------
Q 004783 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHR---------- 77 (730)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~g~~~~h~---------- 77 (730)
+.+.||||||++|+||||++|||+|||||+||+|+|||++|.++ ++|||++|||+||||||+|||+|||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 46789999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred --------cccCCCHHHHHHHHHHHHHHHHhCCCCCCC----C--------------ccccCCC-----------CCCcc
Q 004783 78 --------KLGASSPEEAAKWIHSLQEAALKGGPHQGV----G--------------DHIGCPN-----------SPWES 120 (730)
Q Consensus 78 --------~~~a~~~e~a~~W~~a~~~a~~~~~~~~~~----~--------------~~~~~~~-----------~~~~~ 120 (730)
+|||.|+|||++||+||++|++|+...... + ++.+++. .+.++
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 999999999999999999999975222111 0 1112222 25577
Q ss_pred eeeccCCCCCCCccccCCccccc--ccccccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcH
Q 004783 121 FRLSGSSRASHTKSIDWTLCSGT--HMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTS 198 (730)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAsp 198 (730)
+|..+||+||+.+..+||...+. +|+++.+|+++.+.|+|++|+||++||++..+.+++++ ++.++|||+|+|+|+|
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~-~~~~~mKavGVV~asp 239 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR-SCSRAMKAVGVVEATC 239 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc-cCCceeEEEEEecCCH
Confidence 78889999999999999876664 47899999999999999999999999999999888766 4569999999999999
Q ss_pred HHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCC
Q 004783 199 EAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKK 278 (730)
Q Consensus 199 e~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~ 278 (730)
++||++||+++..|.+||.++.++++||+||+||+|+|.++++.|+|+.+++||||++|+|++.+||+|+|+++|++||+
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998789999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeceEEEEEeCC---CCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 004783 279 CPRQKGSVRACLKSGGYVITPMN---HGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQGNYSS 355 (730)
Q Consensus 279 ~Pp~~G~VRa~i~~gGwvI~Pl~---~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~~~~~~~~~ 355 (730)
|||++|||||++++|||+|.|++ +.++|+|+|++|+|+|||+|+|.++|+++++++||++||+|||||.++++.+.
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999984 33699999999999999999999999999999999999999999999998776
Q ss_pred CccccccccccccccccCCCcccCCCcCCCCC--CCCcccccccccccccccCCCcccccccCCCCCCCCCCCCCCCCCC
Q 004783 356 PEFLSGELTRNMRMHQTDGNMVQMPTEDGNSK--KNTSEEVDQVSSEHASLVGLNDAADEFFDVPEPSDYDDSENGWTSD 433 (730)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 433 (730)
.+|++++.+++++.. .+++++.. ...+.+.....+.+++++++++++|||||+||++++.....
T Consensus 399 -------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~k----- 464 (719)
T PLN00188 399 -------PPRIPVMVNMASASV--SSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTK----- 464 (719)
T ss_pred -------cccceeecccccccc--cccccccccccccccccccccchhhhhhccccccchhccCCCccccccccc-----
Confidence 789999988874322 22222211 12222333344556888999999999999999876211000
Q ss_pred CCCCCCCcCCCCCcccccccchhhhhhHHHhhccccccccCcccCCCc-cccCcccccCCCCCCCCccccCCCCceEEcC
Q 004783 434 FGPEMNSQDTRHPKISTAAGFVRKLHDLAVQKRGYVDLQGTAKEDNFS-CCYGTTLQKDPTCTLPCSWTSTDPSTFLIRG 512 (730)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~Ws~~~~~~F~VRg 512 (730)
+ + +..+ ...+.++..|+ ++|+|+|++++.+++.+||++|++++|+|||
T Consensus 465 ------~-~--------~~~~----------------~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG 513 (719)
T PLN00188 465 ------N-E--------TKDT----------------AMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRS 513 (719)
T ss_pred ------c-c--------cccc----------------ccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcC
Confidence 0 0 0000 02345667788 9999999999999999999999999999999
Q ss_pred cCccccCcccccCCCceeEEEEEeeecCCcccccCCCCCCchhhhhhhcCCceEEEEEEEecCCCCeeEEEEEeecCCCC
Q 004783 513 KNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPGSTTYSLALYYMMTTPVK 592 (730)
Q Consensus 513 ~~Y~~dk~Kvpa~~~l~~lv~vD~f~s~~r~d~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~~p~~slV~Yf~~~~~~~ 592 (730)
+|||+||+|+||+++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++++ +.
T Consensus 514 ~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys~V~Yf~~~~-l~ 590 (719)
T PLN00188 514 KNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYSMVFYFVTKE-LV 590 (719)
T ss_pred CCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceEEEEEEeccC-CC
Confidence 999999999999999999999999999999999999999999987655 489999999999999999999999865 77
Q ss_pred CchhHHHhhcCCchhcccceecccccccCceeEeeecCCcceEeeeeeeEEEEecCCeEEEEEEecchHHHHHHHHHhhc
Q 004783 593 DAPLLESFINGDDAYRNSRFKLIPYISEGSWIVKQSVGKKACLIGQALEINYFHGKNYLELGVDIGSSTVARGVVSLVLG 672 (730)
Q Consensus 593 ~~~Ll~rf~~gdd~~Rn~RfKlIp~v~~g~wivr~avg~kp~Llgk~~~~~y~~g~~ylEiDvDi~sS~vAr~v~~l~~g 672 (730)
+++||+||++|||+|||+||||||+|++||||||++||+|||||||+++|+||+|+||||||||||||+||++|++||+|
T Consensus 591 ~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g 670 (719)
T PLN00188 591 PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIG 670 (719)
T ss_pred CchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEEeecCCcCccccceeceEeecccCcccccccCCCCC
Q 004783 673 YLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLDAAKAVLLKPSSR 719 (730)
Q Consensus 673 ~~~~lvvD~af~Ieg~~~eELPE~lLG~~Rl~~~d~~~a~~~~~~~~ 719 (730)
|+++|||||||+|||+++|||||+|||||||++||+++|+.+++..+
T Consensus 671 ~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~~~~~ 717 (719)
T PLN00188 671 VITTLVVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVPKLDPD 717 (719)
T ss_pred hhhheEEEEEEEEecCChhhCchhheeeEEecccchhhccccCCCCC
Confidence 99999999999999999999999999999999999999998876553
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=3.8e-74 Score=588.89 Aligned_cols=207 Identities=54% Similarity=0.929 Sum_probs=201.9
Q ss_pred cccCCCCceEEcCcCccccCcccccCCCceeEEEEEeeecCCcccccCCCCCCchhhhhhhcCCceEEEEEEEecC----
Q 004783 500 WTSTDPSTFLIRGKNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPG---- 575 (730)
Q Consensus 500 Ws~~~~~~F~VRg~~Y~~dk~Kvpa~~~l~~lv~vD~f~s~~r~d~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~---- 575 (730)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++++....+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999887766 47999999999999
Q ss_pred ------CCCeeEEEEEeecCCCCC------chhHHHhhcCC---chhcccceecccccccCceeEeeec-CCcceEeeee
Q 004783 576 ------STTYSLALYYMMTTPVKD------APLLESFINGD---DAYRNSRFKLIPYISEGSWIVKQSV-GKKACLIGQA 639 (730)
Q Consensus 576 ------~p~~slV~Yf~~~~~~~~------~~Ll~rf~~gd---d~~Rn~RfKlIp~v~~g~wivr~av-g~kp~Llgk~ 639 (730)
+|+||+|+||++++++.+ .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 999999999999998876 78999999999 9999999999999999999999999 9999999999
Q ss_pred eeEEEEecCCeEEEEEEecchHHHHHHHHHhhcccceEEEEEEEEeecCCcCccccceeceEeecccC
Q 004783 640 LEINYFHGKNYLELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLD 707 (730)
Q Consensus 640 ~~~~y~~g~~ylEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~af~Ieg~~~eELPE~lLG~~Rl~~~d 707 (730)
++|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 160 ~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred cceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=4.9e-34 Score=289.05 Aligned_cols=183 Identities=14% Similarity=0.190 Sum_probs=163.5
Q ss_pred CCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004783 154 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 233 (730)
Q Consensus 154 a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~td 233 (730)
..++|++.+..+|+.||.+.... ..++++|++|+|+++|++|++++.+.+ .|.+||+++.++++||+||++|+
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~ 92 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTF 92 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcE
Confidence 35899999999999999997532 356999999999999999999999977 79999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEEE
Q 004783 234 IIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHML 312 (730)
Q Consensus 234 IvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-g~~t~VTyi~ 312 (730)
|+|.++++ .....+++||||.+|+|++.+++.|+++..|++||+|||++|||||++++|||+|+|+++ +.+|.++|++
T Consensus 93 I~~~~~~~-~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~ 171 (204)
T cd08904 93 ICHTITQS-FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFV 171 (204)
T ss_pred EEEEeccc-ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEE
Confidence 99999865 222349999999999999877889999999999999999999999999999999999954 4579999999
Q ss_pred eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 313 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 313 qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
++|||||+|.++ .++.++..|++.+..|++-+
T Consensus 172 ~~DlkG~lP~~v--v~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 172 QPELRGNLSRSV--IEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EeCCCCCCCHHH--HHHHhHHHHHHHHHHHHHhc
Confidence 999999999865 56788888999999888754
No 4
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=2e-33 Score=284.64 Aligned_cols=186 Identities=19% Similarity=0.286 Sum_probs=161.6
Q ss_pred cccCCCCCEEEEecC-CeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHH-hCCCCccccccccceeEEEEee
Q 004783 151 DVIAPSPWTIFGCQN-GLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLM-SLGASRSVWDFCFYRGCVVEHL 228 (730)
Q Consensus 151 dv~a~~~W~lv~~~n-GVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~-d~d~~R~eWD~~~~e~~VVE~i 228 (730)
+++...+|++..+++ |++||++..++ ..+.+|++++|++++++||+.|+ |.+ .|++||+.+.++++|+++
T Consensus 19 ~~~~~~~W~l~~~~~~~i~i~~r~~~~-------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~ 90 (208)
T cd08868 19 SILTDPGWKLEKNTTWGDVVYSRNVPG-------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVI 90 (208)
T ss_pred HHhcCCCceEEEecCCCCEEEEEEcCC-------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEe
Confidence 334556999999997 99999998763 34899999999999999997555 777 799999999999999999
Q ss_pred cCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeE
Q 004783 229 DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSV 307 (730)
Q Consensus 229 D~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-g~~t~ 307 (730)
|++++|+|+.+++. +||++++||||++|+|++. +|.|+|+..|++||++|+++|||||....|||+|+|+++ ..+|.
T Consensus 91 d~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~ 168 (208)
T cd08868 91 DDNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCN 168 (208)
T ss_pred cCCcEEEEEEecCc-CCCcccccceEEEEEEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceE
Confidence 99999999998763 5689999999999999985 578999999999999999999999999999999999964 35899
Q ss_pred EEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004783 308 VKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 348 (730)
Q Consensus 308 VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~~ 348 (730)
|+|++++|||||+|.|+ .+..+...+++++.+||++++.
T Consensus 169 v~~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 169 FTWLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999875 3334445566778899999864
No 5
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=6.6e-32 Score=274.66 Aligned_cols=185 Identities=17% Similarity=0.179 Sum_probs=157.3
Q ss_pred cccCCCCCEEEEec-CCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEee
Q 004783 151 DVIAPSPWTIFGCQ-NGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHL 228 (730)
Q Consensus 151 dv~a~~~W~lv~~~-nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~Vf-evL~d~d~~R~eWD~~~~e~~VVE~i 228 (730)
-..+.++|++...+ ||++||++..+. +. ++||++++|++|+++|| ++|.|++ .|.+||+++.++++|+++
T Consensus 20 ~l~~~~~W~l~~~~~~gi~V~s~~~~~------~~-~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~ 91 (209)
T cd08906 20 ILAQEENWKFEKNNDNGDTVYTLEVPF------HG-KTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRV 91 (209)
T ss_pred HhhcccCCEEEEecCCCCEEEEeccCC------CC-cEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeec
Confidence 34456799998865 999999986652 33 89999999999999997 6889999 799999999999999999
Q ss_pred cCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC-CCCCeeE
Q 004783 229 DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM-NHGKKSV 307 (730)
Q Consensus 229 D~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl-~~g~~t~ 307 (730)
+++++|+|....| |++|++++||||++|+|.+..++ |+++..|+.|+.+|+++|||||++..+||.|.|. .++.+|+
T Consensus 92 ~~~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~ 169 (209)
T cd08906 92 DDNTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCT 169 (209)
T ss_pred cCCcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceE
Confidence 9999999955434 56679999999999999986554 8999999999999999999999999999999997 4445899
Q ss_pred EEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 004783 308 VKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRA 348 (730)
Q Consensus 308 VTyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~~ 348 (730)
|||++|+|||||+|.| ++.+ ++-.+++++.+||++++.
T Consensus 170 vt~~~~~Dp~G~lP~~lvN~~---~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 170 FIWILNTDLKGRLPRYLIHQS---LAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEEecCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 9999999999999976 4444 334455677899999863
No 6
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=1.3e-31 Score=269.92 Aligned_cols=178 Identities=24% Similarity=0.345 Sum_probs=153.3
Q ss_pred CCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004783 154 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 233 (730)
Q Consensus 154 a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~td 233 (730)
...+|++..+++||+||.+..+. ++.++.||++++|+++|++|++.|++ .|.+||+.+.++++|+++|++++
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~~~~-----~~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~ 88 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKKVDD-----GHPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTE 88 (197)
T ss_pred ccCCceEEecCCcEEEEEEeCCC-----CCcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcE
Confidence 36899999999999999997753 13678999999999999999999985 58999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004783 234 IIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 311 (730)
Q Consensus 234 IvY~~~~~~~lP~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi 311 (730)
|+|+.++ .|||+++||||++|+|++. ++|+|+|.++|++|| .+|+ |||||....|||+|+|++++ +|+|||+
T Consensus 89 i~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~ 162 (197)
T cd08869 89 VYQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHI 162 (197)
T ss_pred EEEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEE
Confidence 9999984 4889999999999999874 678999999999995 6676 99999999999999999754 8999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004783 312 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 348 (730)
Q Consensus 312 ~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~~ 348 (730)
+++|||||+|.|+++.-.++.. ..|.+||+-|.+
T Consensus 163 ~~~Dp~G~iP~wl~N~~~~~~~---~~~~~l~~~~~~ 196 (197)
T cd08869 163 CRVDLRGRSPEWYNKVYGHLCA---RELLRIRDSFRQ 196 (197)
T ss_pred EEECCCCCCCceeecchHhHHH---HHHHHHHhhccC
Confidence 9999999999764443333333 345689998753
No 7
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=1.8e-31 Score=271.17 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=155.6
Q ss_pred CCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeecCce
Q 004783 154 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHT 232 (730)
Q Consensus 154 a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~-~R~eWD~~~~e~~VVE~iD~~t 232 (730)
.+++|++.+.+||++||++.... ..++.||++|+|++++++|+++|+|.+. .|.+||+++.++++||++|+++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~ 93 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDV 93 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCE
Confidence 46789999999999999995421 2346799999999999999999998643 5799999999999999999999
Q ss_pred EEEEEEEcCCCCC-CCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEE
Q 004783 233 DIIHKQLYSDWLP-WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKH 310 (730)
Q Consensus 233 dIvY~~~~~~~lP-~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~t~VTy 310 (730)
.|+|..+ | |.+ +++++||||++|+|++.++|+|++...|++||.||+++|||||+..++||+++|++ ++++|.|+|
T Consensus 94 ~i~~~~~-p-~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~ 171 (208)
T cd08903 94 SVCRTVT-P-SAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVS 171 (208)
T ss_pred EEEEEec-c-hhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEE
Confidence 9988854 2 221 23999999999999999999999999999999999999999999999999999994 345899999
Q ss_pred EEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004783 311 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 311 i~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
++++|||||+|.++ .+..++-.+..++.+||+.++
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 172 FFQTDLSGYLPQTV--VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEEeccCCCcCHHH--HHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999764 223344445567789999875
No 8
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.98 E-value=5e-31 Score=266.76 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=155.5
Q ss_pred CCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHh--CCCCccccccccceeEEEEeecCce
Q 004783 155 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS--LGASRSVWDFCFYRGCVVEHLDGHT 232 (730)
Q Consensus 155 ~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d--~d~~R~eWD~~~~e~~VVE~iD~~t 232 (730)
..+|++...++|++||++.... ...+.+|++++|++++++|+++|++ .+ .|.+||+.+.++++|+++++++
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~~ 93 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPSTE------FTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISEDL 93 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCCC------CCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCCe
Confidence 3789999999999999985331 2347899999999999999999998 55 7999999999999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEE
Q 004783 233 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHM 311 (730)
Q Consensus 233 dIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~t~VTyi 311 (730)
+|+|+.+.. ...+++++||||++++|++.++|.|+++..|++||.+|+.+|||||++..|||+|+|+. ++.+|.+||+
T Consensus 94 ~i~~~~~p~-~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~ 172 (206)
T cd08867 94 CVGRTITPS-AAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY 172 (206)
T ss_pred EEEEEEccc-cccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE
Confidence 999986521 11245999999999999998888999999999999999999999999999999999985 3458999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 312 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 312 ~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
+++|||||+|.++ .+..+.-.++..+..||+++
T Consensus 173 ~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 173 VQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 9999999999764 23344445667777899875
No 9
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.97 E-value=7.5e-31 Score=270.16 Aligned_cols=180 Identities=19% Similarity=0.189 Sum_probs=162.1
Q ss_pred CCCCCCCccccCCcccccc----cccccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHH
Q 004783 126 SSRASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAI 201 (730)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~----~~~~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~V 201 (730)
+.+.-..+++.|+..|+++ |-.|++.+.+.++|++..+++||+||++.. +....||+++++++++++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v 92 (235)
T cd08873 21 SLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDA 92 (235)
T ss_pred ecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC--------CCceEEEEEEEecCCHHHH
Confidence 4555667899999999976 445899999999999999999999999972 3568999999999999999
Q ss_pred HHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEc-CC-CcEEEEEEecCCCCC
Q 004783 202 FQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DD-GTYVILYHSVFHKKC 279 (730)
Q Consensus 202 fevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~-~d-GsyvI~~~SV~Hp~~ 279 (730)
+++|.|.+ .|.+||+++.++++|++++++..|+|+++ .+|||+++||||++++|++. ++ +.|+|..+|+.|+.+
T Consensus 93 ~dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~---p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~ 168 (235)
T cd08873 93 FDLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTM---PSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRV 168 (235)
T ss_pred HHHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEc---CCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccC
Confidence 99999999 89999999999999999999888888887 35889999999999999984 33 459999999999999
Q ss_pred CCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004783 280 PRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 318 (730)
Q Consensus 280 Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkG 318 (730)
||++|||||....|||+|+|++++ +|.|||++|+|||-
T Consensus 169 Pp~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 169 PQTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred CCCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 999999999999999999999765 89999999999874
No 10
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=1e-30 Score=267.27 Aligned_cols=180 Identities=22% Similarity=0.312 Sum_probs=157.2
Q ss_pred cCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc
Q 004783 153 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 231 (730)
Q Consensus 153 ~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvV-dAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~ 231 (730)
..+.+|+++.+++||+||++..++ +..+.+|+++++ ++++++++++|+|.+ .|++||+++.++++|++++++
T Consensus 20 ~~~~~W~~~~~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 20 DSTDGWKLKYNKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred cCCCCcEEEEcCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCC
Confidence 345689999999999999998763 467899999987 799999999999988 899999999999999999999
Q ss_pred eEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004783 232 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 311 (730)
Q Consensus 232 tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi 311 (730)
++|+|+.+ .+|||+++||||++|.|+..+ |.|+|+.+|+.|+.+|+++|+|||.+..+||+|+|++.+ +|.|||+
T Consensus 93 ~~i~y~~~---~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~ 167 (222)
T cd08871 93 NDIGYYSA---KCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYV 167 (222)
T ss_pred CEEEEEEe---ECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEE
Confidence 99999998 568999999999999999854 889999999999999999999999999999999999754 7999999
Q ss_pred EeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 312 LAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 312 ~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+|+|||||||.+ ++.+....+..+| .+||+.+.
T Consensus 168 ~~~Dp~G~IP~~lvN~~~~~~~~~~l---~~l~k~~~ 201 (222)
T cd08871 168 TQNDPKGSLPKWVVNKATTKLAPKVM---KKLHKAAL 201 (222)
T ss_pred EecCCCCCcCHHHHHHHHHHHhHHHH---HHHHHHHH
Confidence 999999999965 5555555555444 34554444
No 11
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=6.1e-31 Score=270.36 Aligned_cols=182 Identities=17% Similarity=0.285 Sum_probs=163.9
Q ss_pred CCCccccCCcccccc----cccccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHH
Q 004783 130 SHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL 205 (730)
Q Consensus 130 ~~~~~~~~~~~~~~~----~~~~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL 205 (730)
-..+++.|+..|+++ |-.++....+.++|++..+++||+||++. + ++.+.+|+++++++|+++++++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~-------s~~l~fk~e~~vdvs~~~l~~LL 97 (236)
T cd08914 26 EVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E-------HDVLSVWVEKHVKRPAHLAYRLL 97 (236)
T ss_pred cCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C-------CCcEEEEEEEEEcCCHHHHHHHH
Confidence 456889999999966 44588889999999999999999999995 3 45789999999999999999999
Q ss_pred HhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCC-CCCCceEEEEEEEEEcC-CCc-EEEEEEecCCCCCCCC
Q 004783 206 MSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRRED-DGT-YVILYHSVFHKKCPRQ 282 (730)
Q Consensus 206 ~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~-pvs~RDFV~lR~wrr~~-dGs-yvI~~~SV~Hp~~Pp~ 282 (730)
.|++ .|++||+++.++++|+++|++.+ +|+.. ..|| |+++||||+++.+++.. +|. |+|..+|+.||.+||.
T Consensus 98 ~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~---~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~ 172 (236)
T cd08914 98 SDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHIT---CPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPS 172 (236)
T ss_pred hChh-hhchhHHhhceEEEEEEeCCCcC-EEEEe---cCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCC
Confidence 9999 89999999999999999999988 67776 3588 89999999999988765 775 9999999999999999
Q ss_pred CCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccccc
Q 004783 283 KGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS 326 (730)
Q Consensus 283 ~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~ 326 (730)
+||||+.....||+|+|++++ +|.|||++|+|| ||+|.|..+
T Consensus 173 kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~n 214 (236)
T cd08914 173 PQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAGN 214 (236)
T ss_pred CCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEEe
Confidence 999999999999999999765 899999999999 999977544
No 12
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=9.6e-31 Score=265.31 Aligned_cols=186 Identities=11% Similarity=0.158 Sum_probs=162.2
Q ss_pred cccccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEE
Q 004783 145 MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCV 224 (730)
Q Consensus 145 ~~~~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~V 224 (730)
|-.++....+.++|++.++++||+||++..+ +....||++++|++++++|+++|.|.+ .|++||..+.++++
T Consensus 11 n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~-------~~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~v 82 (205)
T cd08874 11 NLSNLDQCQATAGWSYQCLEKDVVIYYKVFN-------GTYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTARI 82 (205)
T ss_pred hHHHHHhhhccCCcEEEecCCCEEEEEecCC-------CCcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhheee
Confidence 4446667788999999999999999999765 256889999999999999999999999 79999999999999
Q ss_pred EEeecCceEEEEEEEcCCCCCCCC--CCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCC-CeEEEEEeceEEEEEeC-
Q 004783 225 VEHLDGHTDIIHKQLYSDWLPWGM--KRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQK-GSVRACLKSGGYVITPM- 300 (730)
Q Consensus 225 VE~iD~~tdIvY~~~~~~~lP~pv--s~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~-G~VRa~i~~gGwvI~Pl- 300 (730)
|+++++++.|+|+++. .|||+ ++||||+++.|+. +++.++|..+|++||.+|+.+ |||||....|||+|+|+
T Consensus 83 l~~~~~d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~-~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~ 158 (205)
T cd08874 83 HKTFTEDICLVYLVHE---TPLCLLKQPRDFCCLQVEAK-EGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVT 158 (205)
T ss_pred eeecCCCeEEEEEEec---CCCCCCCCCCeEEEEEEEEE-CCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECc
Confidence 9999999999999984 46666 9999999999887 455667999999999999996 99999999999999999
Q ss_pred --CCCCeeEEEEEEeeeCC-CCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 301 --NHGKKSVVKHMLAIDWK-CWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 301 --~~g~~t~VTyi~qvDpk-Gwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+++ +|+|||++|+||+ |-+|.+ .|.+....|. .+|.|+.|+.
T Consensus 159 ~~g~~-~t~vty~~q~DPggg~iP~~l~N~~~~~~p~----~~~~~~~~~~ 204 (205)
T cd08874 159 VEGNQ-YTRVIYIAQVALCGPDVPAQLLSSLSKRQPL----VIARLALFLE 204 (205)
T ss_pred cCCCC-cEEEEEEEEECCCCCCCCHHHHhHHHHhccH----HHHHHHHHhh
Confidence 544 8999999999999 799965 5555555554 5788998875
No 13
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=1.8e-30 Score=259.72 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=161.2
Q ss_pred cCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCce
Q 004783 153 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT 232 (730)
Q Consensus 153 ~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~t 232 (730)
+..++|++.+.++|+.|+.++.+. ..+++||++|+|+..+++|++.+.+.. .|.+||++++++++||+||++|
T Consensus 20 ~~~~~Wkl~k~~~~~~v~~k~~~e------f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt 92 (202)
T cd08902 20 ILEEEWRVAKKSKDVTVWRKPSEE------FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENC 92 (202)
T ss_pred ccccCcEEEEeCCCEEEEEecCCc------CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCc
Confidence 357899999999999999997643 467999999999999999999999877 7999999999999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEE
Q 004783 233 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHM 311 (730)
Q Consensus 233 dIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~t~VTyi 311 (730)
.|+++.... .+...++|||||.++++.+.+||. +++..|++|+..|| |||||+++++||++.|+. ++++|.+||+
T Consensus 93 ~I~~yvt~~-~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~ 168 (202)
T cd08902 93 CVMRYTTAG-QLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGY 168 (202)
T ss_pred EEEEEEccc-CCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEE
Confidence 998666544 344679999999999998877775 77799999999888 999999999999999996 4469999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 312 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 312 ~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
+|+|||||+|..+ .++.++..|++....||+.+
T Consensus 169 lq~DLkG~LPqsi--Idq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLRGMLPQSA--VDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEecCCCCccHHH--HHHHhhHHHHHHHHHHHHhc
Confidence 9999999999754 67889999999999999876
No 14
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=2.1e-30 Score=262.29 Aligned_cols=175 Identities=23% Similarity=0.350 Sum_probs=147.0
Q ss_pred CCCEEEEecCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEE
Q 004783 156 SPWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 234 (730)
Q Consensus 156 ~~W~lv~~~nGVrVy~r-~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdI 234 (730)
.+|..+...|++.++.+ ..+ ++..+++|+++.|+++|++|+..+.+ .|.+||.++.++++||++|+|++|
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d------~~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi 97 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGD------GNPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEV 97 (205)
T ss_pred cCCcccCCcCCeEEEEecCCC------CCceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEE
Confidence 35666666666666443 333 25679999999999999999998875 599999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 004783 235 IHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 313 (730)
Q Consensus 235 vY~~~~~~~lP~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~q 313 (730)
+|+.++. |+|+++||||++|+|+++ ++|+|+|+++|++|+++|+. |+|||....+||+|+|++++ +|+|||+++
T Consensus 98 ~~y~~~~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~ 172 (205)
T cd08909 98 YQYVLNC---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICR 172 (205)
T ss_pred EEEEeec---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEE
Confidence 9999953 668999999999999987 68999999999999999995 99999999999999999876 899999999
Q ss_pred eeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004783 314 IDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 314 vDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+|||||+|.|+++.-.++.. ..+++||+.|.
T Consensus 173 vDpkG~~P~W~~n~~g~~~~---~~~~~~r~sf~ 203 (205)
T cd08909 173 VDLKGHSPEWYNKGFGHLCA---AEAARIRNSFQ 203 (205)
T ss_pred ecCCCCChHHHHHhHHHHHH---HHHHHHHhhcc
Confidence 99999999765443334433 34568998875
No 15
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=2.5e-30 Score=263.04 Aligned_cols=182 Identities=18% Similarity=0.187 Sum_probs=153.0
Q ss_pred CCCCCEEEE-ecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeecCc
Q 004783 154 APSPWTIFG-CQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGH 231 (730)
Q Consensus 154 a~~~W~lv~-~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~Vf-evL~d~d~~R~eWD~~~~e~~VVE~iD~~ 231 (730)
..++|++.+ .++|++||.+..++ +. ++||++++|++++++|+ .++.|++ .+.+|++++.++++|+++|++
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~------~~-k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD------IG-KVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC------CC-cEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCC
Confidence 456899995 58999999987763 33 99999999999999999 5555777 799999999999999999999
Q ss_pred eEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEE
Q 004783 232 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKH 310 (730)
Q Consensus 232 tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-g~~t~VTy 310 (730)
+.|+|+...| |..|++++||||++|+|++. ++.++++..|++|+.+|+++|||||+...|||+|+|+++ +.+|+|+|
T Consensus 95 ~~i~y~~~~p-~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~ 172 (209)
T cd08905 95 TLITHEVAAE-TAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTW 172 (209)
T ss_pred ceEEEEEecc-CCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEE
Confidence 9999985433 22234999999999999985 566778889999999999999999999999999999964 34899999
Q ss_pred EEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 004783 311 MLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRA 348 (730)
Q Consensus 311 i~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~~ 348 (730)
++++|||||+|.| ++.+... .+++++.+||+++.+
T Consensus 173 ~~~~DpkG~iP~~lvN~~~~~---~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 173 LLSIDLKGWLPKSIINQVLSQ---TQVDFANHLRQRMAS 208 (209)
T ss_pred EEeecCCCCCCHHHHHHHhHH---hHHHHHHHHHHHHhc
Confidence 9999999999976 4333334 455667799999863
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=9.5e-30 Score=255.21 Aligned_cols=184 Identities=25% Similarity=0.300 Sum_probs=158.4
Q ss_pred cccCCCCCEEEEe-cCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHH-HHHHHHhCCCCccccccccceeEEEEee
Q 004783 151 DVIAPSPWTIFGC-QNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEA-IFQTLMSLGASRSVWDFCFYRGCVVEHL 228 (730)
Q Consensus 151 dv~a~~~W~lv~~-~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~-VfevL~d~d~~R~eWD~~~~e~~VVE~i 228 (730)
...+..+|++... ++|+.+|++..++ ++.++.+|++++|++++++ +.+++.|++ .|++||+++.++++||++
T Consensus 14 ~~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~ 87 (206)
T smart00234 14 AAASEPGWVLSSENENGDEVRSILSPG-----RSPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVI 87 (206)
T ss_pred hhCCCCccEEccccCCcceEEEEccCC-----CCceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEE
Confidence 3445678999997 8999999987652 1457999999999999987 557787888 899999999999999999
Q ss_pred cCceEEEEEEEcCCCCCC-CCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeE
Q 004783 229 DGHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSV 307 (730)
Q Consensus 229 D~~tdIvY~~~~~~~lP~-pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~ 307 (730)
+++++|+|+.+ .+|| |+++||||++|+|+..++|.|+|+.+|++|+.+|+.+|+|||++..|||+|+|++++ .|+
T Consensus 88 ~~~~~i~~~~~---~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~ 163 (206)
T smart00234 88 DNGTVIYHYVS---KFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSK 163 (206)
T ss_pred CCCCeEEEEEE---ecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeE
Confidence 99999999988 4577 999999999999999888999999999999999999999999999999999999876 699
Q ss_pred EEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 308 VKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 308 VTyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
|||+.|+||+||+|.| ++.+.+..+..++. .||+.+.
T Consensus 164 vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~---~~~~~~~ 201 (206)
T smart00234 164 VTWVSHADLKGWLPHWLVRSLIKSGLAEFAK---TWVATLQ 201 (206)
T ss_pred EEEEEEEecCCCccceeehhhhhhhHHHHHH---HHHHHHH
Confidence 9999999999999965 66666666665544 4555554
No 17
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=7e-30 Score=264.13 Aligned_cols=181 Identities=18% Similarity=0.243 Sum_probs=149.7
Q ss_pred CCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEE
Q 004783 156 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 234 (730)
Q Consensus 156 ~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVd-Aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdI 234 (730)
.+|+++.+++||+||++..+..++ ....+||+++|+ +++++++++|+|.+ +|.+||.++.++++||+++++++|
T Consensus 26 ~~W~l~~~~~gikVy~r~~~~sg~----~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~~~I 100 (235)
T cd08872 26 DGWQLFAEEGEMKVYRREVEEDGV----VLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQDTLI 100 (235)
T ss_pred CCCEEEEeCCceEEEEEECCCCCc----eeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCCCEE
Confidence 389999999999999998774221 112799999998 99999999999999 899999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCceEEEEEEEEEcCC-------CcEEEEEEecCCCCCCCCCCeEEEEEec------------eEE
Q 004783 235 IHKQLYSDWLPWGMKRRDLLLRRYWRREDD-------GTYVILYHSVFHKKCPRQKGSVRACLKS------------GGY 295 (730)
Q Consensus 235 vY~~~~~~~lP~pvs~RDFV~lR~wrr~~d-------GsyvI~~~SV~Hp~~Pp~~G~VRa~i~~------------gGw 295 (730)
+|+.+ .+|||+++||||++++|++.++ +.|+++..|++||.+|+++||||+.... |+|
T Consensus 101 ~Y~~~---k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~ 177 (235)
T cd08872 101 FHQTH---KRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQ 177 (235)
T ss_pred EEEEc---cCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcc
Confidence 99998 5699999999999999998654 5799999999999999999999999743 335
Q ss_pred EEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhc
Q 004783 296 VITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAK 349 (730)
Q Consensus 296 vI~Pl~~g~~t~VTyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~~~ 349 (730)
.++| +++ +|+|||++++|||||+|.| ++...+.. ....|..|-.|+..+
T Consensus 178 ~~t~-~~~-~~~ity~~~~dPgG~iP~wvvn~~~k~~---~P~~l~~~~~~~~~~ 227 (235)
T cd08872 178 EITR-DNI-LCKITYVANVNPGGWAPASVLRAVYKRE---YPKFLKRFTSYVQEK 227 (235)
T ss_pred cccC-CCC-eEEEEEEEEeCCCCCccHHHHHHHHHhh---chHHHHHHHHHHHHh
Confidence 5555 333 8999999999999999966 33333222 234456777777655
No 18
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.97 E-value=1.6e-29 Score=256.57 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=155.5
Q ss_pred CCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecC-c
Q 004783 154 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-H 231 (730)
Q Consensus 154 a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvV-dAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~-~ 231 (730)
+.++|+++.+++||+||++..++ +....|||++++ ++|+++++++++|.+ .|.+||.++.++++|++.++ +
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~ 91 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG------TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETG 91 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCC
Confidence 45679999999999999998774 456899999977 999999999999999 89999999999999998755 8
Q ss_pred eEEEEEEEcCCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC--CCCeeEE
Q 004783 232 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN--HGKKSVV 308 (730)
Q Consensus 232 tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~--~g~~t~V 308 (730)
++|+|+.+ .+|||+++||||+.|.|..+ ++|.|+|+.+|++||.+|+++|+||+....|+|+|+|+. +.+.|.+
T Consensus 92 ~~i~y~~~---~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~ 168 (207)
T cd08911 92 SEIIYWEM---QWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEF 168 (207)
T ss_pred CEEEEEEE---ECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEE
Confidence 99999998 56999999999999998776 456789999999999999999999999999999999994 2347999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004783 309 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 309 Tyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
+|+.+.|||||||.| ++.+.+..+..+ +.+|++..
T Consensus 169 ~~~~~~dPgG~IP~~lvN~~~~~~~~~~---l~~l~~a~ 204 (207)
T cd08911 169 VLTYFDNPGVNIPSYITSWVAMSGMPDF---LERLRNAA 204 (207)
T ss_pred EEEEEeCCCCccCHHHHHHHHHhhccHH---HHHHHHHH
Confidence 999999999999965 555555555554 45666654
No 19
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.97 E-value=1.9e-29 Score=261.15 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=165.8
Q ss_pred CCCCCccccCCcccccc----cccccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHH
Q 004783 128 RASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQ 203 (730)
Q Consensus 128 ~~~~~~~~~~~~~~~~~----~~~~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~Vfe 203 (730)
+.-..+++.|+..|+++ |-.++.-+.+.++|++..+++||+||++.. +.++.||++++|++++++|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~--------s~~~~fK~e~~vd~s~e~v~~ 98 (240)
T cd08913 27 QTEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE--------DKFLSFKVEMVVHVDAAQAFL 98 (240)
T ss_pred cccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC--------CCccEEEEEEEEcCCHHHHHH
Confidence 34566899999999966 344888888999999999999999999653 356899999999999999999
Q ss_pred HHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEc-CCC-cEEEEEEecCCCCCCC
Q 004783 204 TLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG-TYVILYHSVFHKKCPR 281 (730)
Q Consensus 204 vL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~-~dG-syvI~~~SV~Hp~~Pp 281 (730)
+|.|++ .|.+||+++.++++|+++|++.. +|+...+.| +||+++||||+++.|++. ++| .|+|..+|+.||++||
T Consensus 99 lL~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp 175 (240)
T cd08913 99 LLSDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPP 175 (240)
T ss_pred HHhChh-hhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCC
Confidence 999999 89999999999999999998864 677764433 359999999999999775 344 6999999999999999
Q ss_pred CCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHH
Q 004783 282 QKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITI 333 (730)
Q Consensus 282 ~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~-~~~~~~~i~~ 333 (730)
++|||||+...|||+|.|++++ .|+|||++|+||| ++|.+ .+.+....|+
T Consensus 176 ~kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~~~N~~~~~~p~ 226 (240)
T cd08913 176 TPEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYISTDIAGLSSEF 226 (240)
T ss_pred CCCcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHHHhhhhhhccch
Confidence 9999999999999999999765 8999999999996 99965 5555555554
No 20
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.96 E-value=1.4e-28 Score=249.97 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=151.8
Q ss_pred cCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEeecCc
Q 004783 153 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 231 (730)
Q Consensus 153 ~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVd-Aspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~ 231 (730)
.+..+|+++.+++||+||++..++ +..+.|||+++++ +++++++++|+|.+ +|++||.++.+ +++..+++
T Consensus 22 ~~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~ 92 (207)
T cd08910 22 LDGAAWELLVESSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDG 92 (207)
T ss_pred CCCCCeEEEEecCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCC
Confidence 355679999999999999997764 5678999999997 79999999999999 89999999987 67888888
Q ss_pred eEEEEEEEcCCCCCCCCCCceEEEEEEEEEc-CCC--cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEE
Q 004783 232 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVV 308 (730)
Q Consensus 232 tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~-~dG--syvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~V 308 (730)
++|+|+.+ .+|||+++||||++|.++.. .+| .++|+.+|++||.+|+++|+||+....|+|+|+|.+++ .|.+
T Consensus 93 ~~i~y~~~---k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i 168 (207)
T cd08910 93 ETVIYWEV---KYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKV 168 (207)
T ss_pred CEEEEEEE---EcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEE
Confidence 99999998 56999999999999887643 234 46889999999999999999999999999999998654 7999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004783 309 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 309 Tyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
+|+.+.|||||||.| ++.+.+..+..+ +.+||+..
T Consensus 169 ~~~~~~DPgG~IP~wlvN~~~~~~~~~~---l~~l~ka~ 204 (207)
T cd08910 169 FMYYFDNPGGMIPSWLINWAAKNGVPNF---LKDMQKAC 204 (207)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHhhHHH---HHHHHHHH
Confidence 999999999999965 555555555444 45777655
No 21
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.96 E-value=1.4e-27 Score=242.59 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=154.4
Q ss_pred CCCEEEEecCC----eEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecC
Q 004783 156 SPWTIFGCQNG----LRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 230 (730)
Q Consensus 156 ~~W~lv~~~nG----VrVy~r~~~~~~~~~~s~~~~~KavgvV-dAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~ 230 (730)
.+|+++.+++| ++||++..++ +.+..||+++++ ++|+++|+++|+|.+ .|++||.++.++++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~ 94 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG------TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEK 94 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC------CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCC
Confidence 68999999999 9999998774 456899999999 679999999999998 89999999999999998554
Q ss_pred -ceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEE
Q 004783 231 -HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVV 308 (730)
Q Consensus 231 -~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~g~~t~V 308 (730)
+++|+|+.+ .+|||+++||||+.|.+..+.+|.++|+.+|+.||.+|+. |+||+....|+|+|+|+. ++.+|.+
T Consensus 95 ~~~~i~y~~~---~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~ 170 (209)
T cd08870 95 SGTEIVRWVK---KFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSAC 170 (209)
T ss_pred CCcEEEEEEE---ECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceEE
Confidence 589999998 5799999999999998887668899999999999999999 999999999999999993 3348999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 309 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 309 Tyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+|+++.||+|+||.| ++.+....+. ..+.+||+.+.
T Consensus 171 ~~~~~~dp~G~IP~wlvN~~~~~~~~---~~l~~l~~a~~ 207 (209)
T cd08870 171 EVTYFHNPDGGIPRELAKLAVKRGMP---GFLKKLENALR 207 (209)
T ss_pred EEEEEECCCCCCCHHHHHHHHHhhhH---HHHHHHHHHHh
Confidence 999999999999976 4444444443 45567877663
No 22
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.96 E-value=3.1e-27 Score=236.44 Aligned_cols=187 Identities=26% Similarity=0.411 Sum_probs=152.7
Q ss_pred ccCCCCCEEEEecCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecC
Q 004783 152 VIAPSPWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 230 (730)
Q Consensus 152 v~a~~~W~lv~~~nGVrVy~r-~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~ 230 (730)
.....+|++..++++..++.+ ..+.+ +..++.+|++++|++++++++..|++.. . +||+.+.++++||++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~ 87 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSD----SCPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDE 87 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSS----STSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEET
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCccc----cccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCC
Confidence 346789999995555444433 33321 1267899999999999999999999744 2 99999999999999999
Q ss_pred ceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCC-CCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 004783 231 HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPR-QKGSVRACLKSGGYVITPMNHGKKSVVK 309 (730)
Q Consensus 231 ~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp-~~G~VRa~i~~gGwvI~Pl~~g~~t~VT 309 (730)
+++|+|+.++.. +|+|+++||||++|+|++..+|.|+|+.+|++||.+|+ .+|+|||++..+||+|+|++++ .|+||
T Consensus 88 ~~~i~~~~~~~~-~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt 165 (206)
T PF01852_consen 88 DTDIVYFVMKSP-WPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVT 165 (206)
T ss_dssp TEEEEEEEEE-C-TTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEE
T ss_pred CCeEEEEEeccc-CCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEE
Confidence 999999998552 23399999999999999988999999999999999999 9999999999999999999876 69999
Q ss_pred EEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhcc
Q 004783 310 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAKQ 350 (730)
Q Consensus 310 yi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~~~~ 350 (730)
|+.|+|||||+|.+ .+.+... .+.+.+..||+.++...
T Consensus 166 ~~~~~D~~G~iP~~~~n~~~~~---~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 166 YVSQVDPKGWIPSWLVNMVVKS---QPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH---HHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCChHHHHHHHHHH---hHHHHHHHHHHHHHHhc
Confidence 99999999999965 3333333 34556678999888653
No 23
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=6.7e-28 Score=241.70 Aligned_cols=177 Identities=21% Similarity=0.293 Sum_probs=150.4
Q ss_pred CCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeecCce
Q 004783 154 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGHT 232 (730)
Q Consensus 154 a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~Vf-evL~d~d~~R~eWD~~~~e~~VVE~iD~~t 232 (730)
...+|......+|+.|+.+..+. +...+.+|+...|+++|.+|+ ++|. .|+.||.++.+.++||+||+++
T Consensus 25 k~kgW~~~~~~~~vev~~kk~~d-----~~~l~lwk~s~ei~~~p~~vl~rvL~----dR~~WD~~m~e~~~Ie~Ld~n~ 95 (205)
T cd08907 25 RFKGWHSAPGPDNTELACKKVGD-----GHPLRLWKVSTEVEAPPSVVLQRVLR----ERHLWDEDLLHSQVIEALENNT 95 (205)
T ss_pred ccCCceeecCCCCcEEEEEeCCC-----CCceEEEEEEEEecCCCHHHHHHHhh----chhhhhHHHHhhhhheeecCCC
Confidence 44689999999999998875442 256789999999988665555 5555 3999999999999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004783 233 DIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 311 (730)
Q Consensus 233 dIvY~~~~~~~lP~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi 311 (730)
||.|+.++ +|.|+++||||++|.|+.+ +.|.|+|+..||+|++.||.+| |||..+.+||+|+|.+.+ +|+|||+
T Consensus 96 dI~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi 170 (205)
T cd08907 96 EVYHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHI 170 (205)
T ss_pred EEEEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEE
Confidence 99999994 5789999999999999865 6788999999999999999999 999999999999999765 8999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004783 312 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 312 ~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
.++|++||+|.|+++.-.++.. ..+.+||+.|.
T Consensus 171 ~rvD~rG~~P~Wynk~~g~~~a---~~l~~ir~sF~ 203 (205)
T cd08907 171 CRADLRGRSPDWYNKVFGHLCA---MEVARIRDSFP 203 (205)
T ss_pred EEeCCCCCCcHHHHHhHHHHHH---HHHHHHHhhcc
Confidence 9999999999776553334432 35678999875
No 24
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.95 E-value=7e-27 Score=229.02 Aligned_cols=167 Identities=33% Similarity=0.531 Sum_probs=150.0
Q ss_pred CCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004783 156 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 235 (730)
Q Consensus 156 ~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIv 235 (730)
.+|+++.+++|++||++..+. +....+|++++|++++++|+++|.+.+ .|++||+.+.++++|++++++..|+
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~ 87 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED------SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDII 87 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC------CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEE
Confidence 489999999999999998763 456899999999999999999999988 7999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 004783 236 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 315 (730)
Q Consensus 236 Y~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvD 315 (730)
|+.+ ..|||+++||||+++++....+|.++++.+|++|+.+|+.+++|||.+..+||+|+|++++ .|+|||++++|
T Consensus 88 ~~~~---~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~-~~~vt~~~~~D 163 (193)
T cd00177 88 YYKT---KPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG-KTKVTYVLQVD 163 (193)
T ss_pred EEEe---eCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC-CEEEEEEEeeC
Confidence 9999 4588999999999999998777899999999999999999999999999999999999654 89999999999
Q ss_pred CCCCcccc-cccchhhHHH
Q 004783 316 WKCWRSYL-QPSSARSITI 333 (730)
Q Consensus 316 pkGwip~~-~~~~~~~i~~ 333 (730)
|+||+|.+ .+......+.
T Consensus 164 ~~g~iP~~~~~~~~~~~~~ 182 (193)
T cd00177 164 PKGSIPKSLVNSAAKKQLA 182 (193)
T ss_pred CCCCccHHHHHhhhhhccH
Confidence 99999964 4443333333
No 25
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=2.7e-27 Score=239.72 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=145.2
Q ss_pred CCEEEEecCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004783 157 PWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 235 (730)
Q Consensus 157 ~W~lv~~~nGVrVy~r-~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIv 235 (730)
+|..+...|++.+..+ ..+ ++.++.+|+++.|+++|++|+..|++ .|.+||..+.++++|+++|++++|+
T Consensus 28 ~w~~~~~~~~~el~~~k~~~------gs~l~~~r~~~~i~a~~~~vl~~lld---~~~~Wd~~~~e~~vIe~ld~~~~I~ 98 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVSE------GPPLRLWRTTIEVPAAPEEILKRLLK---EQHLWDVDLLDSKVIEILDSQTEIY 98 (204)
T ss_pred CCcccCCCCcEEEEEeccCC------CCCcEEEEEEEEeCCCHHHHHHHHHh---hHHHHHHHhhheEeeEecCCCceEE
Confidence 4555555666665443 333 36789999999999999999999986 3899999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004783 236 HKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 314 (730)
Q Consensus 236 Y~~~~~~~lP~pvs~RDFV~lR~wrr~-~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qv 314 (730)
|+.+ ..|||+++||||++|.|+.. .+|.|+|...|++|+.+|+. +|||....|||+|+|++++ +|+|||++++
T Consensus 99 Yy~~---~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~ 172 (204)
T cd08908 99 QYVQ---NSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCRI 172 (204)
T ss_pred EEEc---cCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEEe
Confidence 9998 45899999999999999864 78899999999999999976 6999999999999999766 8999999999
Q ss_pred eCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 315 DWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 315 DpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
||||++|.| .+.++.-+.. .+.+||+.|.
T Consensus 173 DPgG~iP~W~~N~~g~~~~~----~~~~~r~sf~ 202 (204)
T cd08908 173 DLRGHMPEWYTKSFGHLCAA----EVVKIRDSFS 202 (204)
T ss_pred CCCCCCcHHHHhhHHHHHHH----HHHHHHhhcc
Confidence 999999965 5555544333 4568999885
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.95 E-value=1.7e-26 Score=230.37 Aligned_cols=178 Identities=22% Similarity=0.324 Sum_probs=153.4
Q ss_pred CCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004783 154 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 233 (730)
Q Consensus 154 a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~td 233 (730)
+..+|+++.+++|++||++..++ +....+|++++|+++|++|++++.|++ .|++||+.+.++++||+++++.+
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~ 87 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNER 87 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcE
Confidence 33459999999999999998763 345899999999999999999999999 79999999999999999998899
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 004783 234 IIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 312 (730)
Q Consensus 234 IvY~~~~~~~lP~pvs~RDFV~lR~wrr~~-dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~ 312 (730)
++|..+ .+|||+++||||+.+.++... +|.++|...|+.|+ +|+++||||+....|+|.|+|++++ +|+|+|++
T Consensus 88 i~~~~~---~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~~~ 162 (195)
T cd08876 88 SVYTVI---DLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTYQA 162 (195)
T ss_pred EEEEEE---ecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEEEEEE
Confidence 999998 458899999999998777654 68899999999887 8999999999999999999999754 89999999
Q ss_pred eeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004783 313 AIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 313 qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
++||+||+|.+ ++...+..+. ..+++||+.+
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~---~~l~~l~~~~ 194 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPY---NTLENLRKQL 194 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 99999999975 4334444433 4456777754
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=1.5e-25 Score=228.16 Aligned_cols=186 Identities=20% Similarity=0.299 Sum_probs=160.7
Q ss_pred ccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe
Q 004783 148 VTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH 227 (730)
Q Consensus 148 ~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~ 227 (730)
+..+..+..+|++..+++|++||.+..+. +....+|++|+|+++++.++++|.|.+ .+++|++.+.++++|++
T Consensus 14 ~~~~l~~~~~W~~~~~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~~ 86 (215)
T cd08877 14 NLKDLDESDGWTLQKESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVKQ 86 (215)
T ss_pred HHhcccCCCCcEEeccCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEee
Confidence 44455567899999999999999997763 457899999999999999999999998 89999999999999999
Q ss_pred ecCceEEEEEEEcCCCCCCCCCCceEEEEEEE-EEc-CCCcEEEEEEecCCCC---------CCCCC-CeEEEEEeceEE
Q 004783 228 LDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYW-RRE-DDGTYVILYHSVFHKK---------CPRQK-GSVRACLKSGGY 295 (730)
Q Consensus 228 iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~w-rr~-~dGsyvI~~~SV~Hp~---------~Pp~~-G~VRa~i~~gGw 295 (730)
++..+.|+|+.+ .+|||+++||+|+.... ... ++|+++|+..|+.|+. +|+.+ |+||+....|||
T Consensus 87 ~~~~~~v~y~~~---~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~ 163 (215)
T cd08877 87 LGRADKVCYLRV---DLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGF 163 (215)
T ss_pred cCCceEEEEEEE---eCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceE
Confidence 999999999998 57999999999987333 333 7899999999999875 79999 999999999999
Q ss_pred EEEeCCCCCeeEEEEEEeeeCCCC-cccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 296 VITPMNHGKKSVVKHMLAIDWKCW-RSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 296 vI~Pl~~g~~t~VTyi~qvDpkGw-ip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+|+|++++ +|.|+|++++||||+ +|.| .+.+.+.++..++. +||+.++
T Consensus 164 ~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~---~l~k~~~ 213 (215)
T cd08877 164 VITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFE---KIQKAAK 213 (215)
T ss_pred EEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 99999865 899999999999998 9965 66666777776664 6666554
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.88 E-value=7.7e-22 Score=198.79 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=152.9
Q ss_pred ccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeec-
Q 004783 152 VIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD- 229 (730)
Q Consensus 152 v~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvV-dAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD- 229 (730)
..++.+|+++.+++++.||....+. +....||+.++. |+||+.|+++++|.+ +|++||.++.+.++||...
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~------~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~ 97 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK------TGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPV 97 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC------CCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCC
Confidence 5677899999999999999943332 236899999998 899999999999999 9999999999999999864
Q ss_pred CceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEE-eC--CCCCee
Q 004783 230 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVIT-PM--NHGKKS 306 (730)
Q Consensus 230 ~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~-Pl--~~g~~t 306 (730)
-+++|+|+.. .+|.|+++||||++|.|...++..|+|+..|+.||..|+++++||+....+||+|+ |. ++++.|
T Consensus 98 tg~~vv~w~~---kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~ 174 (219)
T KOG2761|consen 98 TGTEVVYWVK---KFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGC 174 (219)
T ss_pred CCceEEEEEE---eCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCcc
Confidence 5789999998 57999999999999888775447799999999999999999999999999999999 54 345689
Q ss_pred EEEEEEeeeCCCCcccccccc--hhhHHHHHHHHHHHHHHHHH
Q 004783 307 VVKHMLAIDWKCWRSYLQPSS--ARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 307 ~VTyi~qvDpkGwip~~~~~~--~~~i~~~mL~~va~LRe~~~ 347 (730)
.+.|..+.||+|-+|.++.+. ..-+|-.+-..-.+++.|..
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~ 217 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQE 217 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhh
Confidence 999999999999999654332 23333333333345666554
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.47 E-value=4.5e-14 Score=154.25 Aligned_cols=170 Identities=18% Similarity=0.306 Sum_probs=138.6
Q ss_pred cccccccccCCCCCEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEE-EecCcHHHHHHHHHhCCCCccccccccceeE
Q 004783 145 MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVG-VVDGTSEAIFQTLMSLGASRSVWDFCFYRGC 223 (730)
Q Consensus 145 ~~~~~~dv~a~~~W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~Kavg-vVdAspe~VfevL~d~d~~R~eWD~~~~e~~ 223 (730)
..+.+.++...+.|+++....-+++|++..+..+. .....||.- +..+++.+++.++.+.+ .|.+|+.+++.+.
T Consensus 392 ~~~~~~~~g~d~nwqlFaeegemkmy~re~eeng~----~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~ 466 (611)
T KOG1739|consen 392 MTYSLQDVGGDANWQLFAEEGEMKMYRREVEENGI----VLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFH 466 (611)
T ss_pred hhhhcccccccchhhhhcccCCccccceeeccCCc----ccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhce
Confidence 34466677777789999999999999998775433 445677775 45689999999999999 8999999999999
Q ss_pred EEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEc----CC--CcEEEEEEecCCCCCCCCCCeEEEEEece---E
Q 004783 224 VVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----DD--GTYVILYHSVFHKKCPRQKGSVRACLKSG---G 294 (730)
Q Consensus 224 VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~----~d--GsyvI~~~SV~Hp~~Pp~~G~VRa~i~~g---G 294 (730)
|||+|.+++-|+|++.+. -||.++||-.++.++|+- ++ ..|++|..|++|.+.|-.+..||+.+... .
T Consensus 467 vve~is~d~~~~~qthkr---vwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micq 543 (611)
T KOG1739|consen 467 VVETISDDAIIIYQTHKR---VWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQ 543 (611)
T ss_pred eeeeecCCeEEEEecccc---cCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeee
Confidence 999999999999999854 589999999999888773 33 36999999999999999999999976532 2
Q ss_pred EEEEe------CC-CCCeeEEEEEEeeeCCCCccc
Q 004783 295 YVITP------MN-HGKKSVVKHMLAIDWKCWRSY 322 (730)
Q Consensus 295 wvI~P------l~-~g~~t~VTyi~qvDpkGwip~ 322 (730)
-.+.| ++ +.-.|.+||+.+++||||.|.
T Consensus 544 t~v~~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 544 TLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred cccCCcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 22222 21 234899999999999999993
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.47 E-value=1.2e-12 Score=134.84 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=113.0
Q ss_pred CCceEEEEEEecCcHHHHHHHHHhCCCCccc-cccccceeEEEEeecCc--------eEEEEEEEcCCCCC-CCCCCceE
Q 004783 184 DHPAIMAVGVVDGTSEAIFQTLMSLGASRSV-WDFCFYRGCVVEHLDGH--------TDIIHKQLYSDWLP-WGMKRRDL 253 (730)
Q Consensus 184 ~~~~~KavgvVdAspe~VfevL~d~d~~R~e-WD~~~~e~~VVE~iD~~--------tdIvY~~~~~~~lP-~pvs~RDF 253 (730)
..-+-|+.|+|...|..|.++|||.+ ...+ ++..+..+++++.|+.. ..++|.+++ .| ..+.+|||
T Consensus 58 ~~eASR~~glV~m~~~~lVe~lmD~~-kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~---~pSpLVp~Re~ 133 (229)
T cd08875 58 TTEASRACGLVMMNAIKLVEILMDVN-KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQ---VPSPLVPTREF 133 (229)
T ss_pred eEEEEeeeEEEecCHHHHHHHHhChh-hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcc---cCcccccCCeE
Confidence 45678999999999999999999765 1222 34488889999888643 678999884 34 35899999
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCc
Q 004783 254 LLRRYWRREDDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWR 320 (730)
Q Consensus 254 V~lR~wrr~~dGsyvI~~~SV~Hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwi 320 (730)
+++||..+.+||+++|+-.|+++. ..|+.++++|++..++||+|+|+++| .|+|||+-|+|...|.
T Consensus 134 ~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 134 YFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCCc
Confidence 999999999999999999999987 68888999999999999999999887 8999999999988873
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.36 E-value=6.9e-12 Score=128.13 Aligned_cols=131 Identities=11% Similarity=-0.011 Sum_probs=98.3
Q ss_pred Cccccccccc--eeEEEEeecCce----EEEEEEEcCCCCCCCCCCceEEEEEE-EEEcC-CCcEEEEEEecCCCCCC-C
Q 004783 211 SRSVWDFCFY--RGCVVEHLDGHT----DIIHKQLYSDWLPWGMKRRDLLLRRY-WRRED-DGTYVILYHSVFHKKCP-R 281 (730)
Q Consensus 211 ~R~eWD~~~~--e~~VVE~iD~~t----dIvY~~~~~~~lP~pvs~RDFV~lR~-wrr~~-dGsyvI~~~SV~Hp~~P-p 281 (730)
.-.+|.+.+. ++++|+..++.. .|+|+.+ .+|||+++|||+.+.. ....+ ...+++...++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~---~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTY---KFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEE---ECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 4579999999 899999887665 7888888 6799999999999977 33322 15688889999999999 9
Q ss_pred CCCeEEEEEece-EEEEEeCCCCCeeEEEEEE--eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 282 QKGSVRACLKSG-GYVITPMNHGKKSVVKHML--AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 282 ~~G~VRa~i~~g-GwvI~Pl~~g~~t~VTyi~--qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
.+|||||.-..+ -|.+.|.+.+..+.|+|++ +.||||+||.|+.+ ..+|-.+..-+..+-+|+
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n--~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTK--LTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHh--ccCchHHHHhHHHHHHHh
Confidence 999999997666 6777787522356777777 99999999976432 234444444444444443
No 32
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.27 E-value=1.1e-11 Score=110.77 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=67.2
Q ss_pred ccceeEEEeeec-cccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEe--cc----ccceecc-----c
Q 004783 11 RMEGWLHLIRSN-RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVT--DN----GRESIHR-----K 78 (730)
Q Consensus 11 ~~eGwl~~~g~~-~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~--~~----g~~~~h~-----~ 78 (730)
|+||||++.+.. ++....+++|||||+|+.|.|||.+.+ ..|.+.+.|.+++... +. .|++.|. .
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~---~~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~ 77 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD---EKAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFY 77 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC---CccceEEEccCCEEEEchhcCCceEEEECCCCCcEEE
Confidence 589999998753 224557999999999999999998876 6788888899887642 22 3555433 7
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 004783 79 LGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 79 ~~a~~~e~a~~W~~a~~~a 97 (730)
|+|.|.||+.+||+||..|
T Consensus 78 f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 78 FAAETLDDLSQWVNHLITA 96 (96)
T ss_pred EEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999876
No 33
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.22 E-value=3e-11 Score=110.26 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=64.8
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecce---EEec-----------cccceecc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI---RVTD-----------NGRESIHR 77 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~---~v~~-----------~g~~~~h~ 77 (730)
+||||.+.|...+ .-+++|||||+++.|.|||.+.+ ..|.+.+.++.++ .|.+ ++|+++..
T Consensus 1 KeG~L~K~g~~~~--k~wkkRwFvL~~~~L~Yyk~~~d---~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKHT--EGFKKRWFTLDDRRLMYFKDPLD---AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCCC--CCceeEEEEEeCCEEEEECCCCC---cCcCcEEEeeccccceeEeccCCccccccccceEEEEeC
Confidence 5899999997422 23699999999999999997665 5788888877554 2321 14554443
Q ss_pred ----cccCCCHHHHHHHHHHHHHHHH
Q 004783 78 ----KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 78 ----~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
.|.|.|.+|+..||+||+.|+.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 34
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.17 E-value=8e-11 Score=102.72 Aligned_cols=82 Identities=24% Similarity=0.463 Sum_probs=67.0
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEeccc----ccee--cc---cccCC
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESI--HR---KLGAS 82 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~g----~~~~--h~---~~~a~ 82 (730)
|||||++.+.. + ..+++|||||+++.|.||+.+.... ..|.+.+.|++|+..++.+ |++. ++ .|.|.
T Consensus 1 ~~G~L~k~~~~-~--~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~ 76 (91)
T cd01246 1 VEGWLLKWTNY-L--KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDSDDKCFTIDTGGDKTLHLRAN 76 (91)
T ss_pred CeEEEEEeccc-C--CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCCCCcEEEEEcCCCCEEEEECC
Confidence 79999999763 3 4589999999999999999887633 4899999999988755543 5553 32 89999
Q ss_pred CHHHHHHHHHHHHHH
Q 004783 83 SPEEAAKWIHSLQEA 97 (730)
Q Consensus 83 ~~e~a~~W~~a~~~a 97 (730)
|.+|+.+|+.||+.|
T Consensus 77 s~~e~~~Wi~al~~a 91 (91)
T cd01246 77 SEEERQRWVDALELA 91 (91)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999876
No 35
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.09 E-value=2.7e-10 Score=104.52 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=67.2
Q ss_pred cceeEEEee--eccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEec--------------ccccee
Q 004783 12 MEGWLHLIR--SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD--------------NGRESI 75 (730)
Q Consensus 12 ~eGwl~~~g--~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~--------------~g~~~~ 75 (730)
.||||++++ ..++|+.-+++|||||++..|.|||.+++. ...|.+++-+..+..|+. +.|+++
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 589999996 444677678999999999999999987763 246888888888777652 235565
Q ss_pred cc----cccCCCHHHHHHHHHHHHH
Q 004783 76 HR----KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 76 h~----~~~a~~~e~a~~W~~a~~~ 96 (730)
+. .|.|.|.+|+.+||+||++
T Consensus 81 t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 81 HDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred eCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 55 7789999999999999975
No 36
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.07 E-value=3.6e-10 Score=101.68 Aligned_cols=82 Identities=24% Similarity=0.364 Sum_probs=65.7
Q ss_pred cceeEEEeeeccccccccceeeEEEec--ceeeecccCCCCCCCCCceeEEeecceEEe-----ccccceecc----ccc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSCIRVT-----DNGRESIHR----KLG 80 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~-----~~g~~~~h~----~~~ 80 (730)
+.|||.+.|....... +++|||||++ ..|.|||.+.+ ..|++++-+.+++.+. .+.|+++.+ .|.
T Consensus 1 l~GyL~K~g~~~~~K~-WkkRWFvL~~~~~~L~Yyk~~~d---~~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~ 76 (95)
T cd01265 1 LCGYLHKIEGKGPLRG-RRSRWFALDDRTCYLYYYKDSQD---AKPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALK 76 (95)
T ss_pred CcccEEEecCCCCCcC-ceeEEEEEcCCCcEEEEECCCCc---ccccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEE
Confidence 4799999997644444 5999999984 58999997765 6899999988877642 234665444 999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004783 81 ASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 81 a~~~e~a~~W~~a~~~a 97 (730)
|.|.+|+.+||+||+.|
T Consensus 77 A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 77 ASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999999987
No 37
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.05 E-value=5.5e-10 Score=99.88 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=63.8
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEecc----ccce-ecc----cccCC
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN----GRES-IHR----KLGAS 82 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~----g~~~-~h~----~~~a~ 82 (730)
++|||.+.|.- +. . +++|||||++..|.|||.+++.. ..|.+++-+.+|+.+.+. .|++ ..+ .|.|.
T Consensus 1 ~~G~L~K~~~~-~k-~-Wk~RwFvL~~g~L~Yyk~~~~~~-~~~~G~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~ 76 (91)
T cd01247 1 TNGVLSKWTNY-IN-G-WQDRYFVLKEGNLSYYKSEAEKS-HGCRGSIFLKKAIIAAHEFDENRFDISVNENVVWYLRAE 76 (91)
T ss_pred CceEEEEeccc-cC-C-CceEEEEEECCEEEEEecCccCc-CCCcEEEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeC
Confidence 58999999963 32 2 69999999999999999988643 467888888888776543 2554 222 89999
Q ss_pred CHHHHHHHHHHHHH
Q 004783 83 SPEEAAKWIHSLQE 96 (730)
Q Consensus 83 ~~e~a~~W~~a~~~ 96 (730)
|.+|+.+|++||+.
T Consensus 77 s~~e~~~Wi~al~~ 90 (91)
T cd01247 77 NSQSRLLWMDSVVR 90 (91)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999974
No 38
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.98 E-value=1.9e-09 Score=101.38 Aligned_cols=84 Identities=21% Similarity=0.390 Sum_probs=65.6
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEec--cc----ccee---------
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD--NG----RESI--------- 75 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~--~g----~~~~--------- 75 (730)
++||||++.|.. + ..+++|||||.++.|.|||...+ ..|.+++.+++++.+.. .+ |+++
T Consensus 1 ~k~G~L~K~~~~-~--~~WkkRwfvL~~~~L~yyk~~~~---~~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~ 74 (125)
T cd01252 1 DREGWLLKQGGR-V--KTWKRRWFILTDNCLYYFEYTTD---KEPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIK 74 (125)
T ss_pred CcEEEEEEeCCC-C--CCeEeEEEEEECCEEEEEcCCCC---CCceEEEECCCcEEEEcccCCCCeeEEEECCccccccc
Confidence 479999998864 3 34899999999999999996554 68999999997765433 22 3221
Q ss_pred -----------cc-----cccCCCHHHHHHHHHHHHHHHHh
Q 004783 76 -----------HR-----KLGASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 76 -----------h~-----~~~a~~~e~a~~W~~a~~~a~~~ 100 (730)
|+ .|.|.|.+|+.+||.||+.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred cccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 12 48999999999999999999773
No 39
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.97 E-value=1.8e-09 Score=97.87 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred cccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEE--ec--------cccceecc--
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRV--TD--------NGRESIHR-- 77 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v--~~--------~g~~~~h~-- 77 (730)
|.++|||.+.|.+ ++ -+++|||||+++.|.|||.+.+ ..|++.+-+..+... ++ +.|++..+
T Consensus 2 v~k~G~L~Kkg~~-~k--~WkkRwfvL~~~~L~yyk~~~~---~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~r 75 (100)
T cd01233 2 VSKKGYLNFPEET-NS--GWTRRFVVVRRPYLHIYRSDKD---PVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHR 75 (100)
T ss_pred cceeEEEEeeCCC-CC--CcEEEEEEEECCEEEEEccCCC---ccEeeEEEecccEEEEccchhhhcCCCcEEEEECCCC
Confidence 4589999999885 33 3899999999999999999876 688888888855432 22 23445434
Q ss_pred --cccCCCHHHHHHHHHHHHHHH
Q 004783 78 --KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 78 --~~~a~~~e~a~~W~~a~~~a~ 98 (730)
.|.|.|.+|+..||+||....
T Consensus 76 t~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 76 GYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EEEEEcCCHHHHHHHHHHhhhhh
Confidence 899999999999999997653
No 40
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.93 E-value=2.4e-09 Score=97.54 Aligned_cols=85 Identities=32% Similarity=0.506 Sum_probs=65.3
Q ss_pred cccceeEEEeeeccccccccceeeEEEe-cceeeecccCCCCC--CCCCceeEEeecceEEe-c----ccccee------
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVT-D----NGRESI------ 75 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~--~~~P~~~~ii~~~~~v~-~----~g~~~~------ 75 (730)
+.+||||.+.|.. ++. +++|||||+ +..|.|||.+|.+. ...|+....+.+|..+. + +++.+.
T Consensus 1 v~k~G~L~K~g~~-~~~--Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~ 77 (102)
T cd01241 1 VVKEGWLHKRGEY-IKT--WRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTT 77 (102)
T ss_pred CcEEEEEEeecCC-CCC--CeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCc
Confidence 3589999999973 333 799999999 77888999888654 26788888888887642 2 245553
Q ss_pred --cccccCCCHHHHHHHHHHHHHH
Q 004783 76 --HRKLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 76 --h~~~~a~~~e~a~~W~~a~~~a 97 (730)
-+.+.|.|.||++.||+||+.+
T Consensus 78 ~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 78 VIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHhh
Confidence 1278899999999999999876
No 41
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.93 E-value=3e-09 Score=95.37 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=61.7
Q ss_pred cceeEEEeeeccccccccceeeEEEecc--eeeecccCCCCCCCCCceeEEeecceEEecc----c----------cce-
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDH--FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN----G----------RES- 74 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~--~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~----g----------~~~- 74 (730)
+||||.+.|.. ++ -+++|||||.++ .|.|||.+.+ ..|.+++-+..++.|+.. + +++
T Consensus 1 ~~G~L~K~g~~-~k--~WkkRwFvL~~~~~~L~Yy~~~~~---~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~ 74 (101)
T cd01235 1 CEGYLYKRGAL-LK--GWKPRWFVLDPDKHQLRYYDDFED---TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK 74 (101)
T ss_pred CeEEEEEcCCC-CC--CccceEEEEECCCCEEEEecCCCC---CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEE
Confidence 58999999963 33 379999999954 9999997754 678888888887776531 1 221
Q ss_pred ecc---cccCCCHHHHHHHHHHHHHHH
Q 004783 75 IHR---KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 75 ~h~---~~~a~~~e~a~~W~~a~~~a~ 98 (730)
.++ .|.|.|.||+..|++||+.++
T Consensus 75 t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 75 TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 111 788999999999999998864
No 42
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.92 E-value=2.6e-09 Score=97.46 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=65.2
Q ss_pred cccceeEEEeeeccccccccceeeEEEecc------eeeecccCCCCC--CCCCceeEEeecceEEecc-------ccce
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDN-------GRES 74 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~--~~~P~~~~ii~~~~~v~~~-------g~~~ 74 (730)
+.++|||.+.++ +|+|||||++. .|.|||.+.... ...|.|++-++.|.-|... ++++
T Consensus 2 v~k~GyL~K~K~-------~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i 74 (101)
T cd01257 2 VRKSGYLRKQKS-------MHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIAL 74 (101)
T ss_pred ccEEEEEeEecC-------cEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEE
Confidence 678999999633 59999999999 899999987632 2689999999999998653 3343
Q ss_pred ecc----cccCCCHHHHHHHHHHHHH
Q 004783 75 IHR----KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 75 ~h~----~~~a~~~e~a~~W~~a~~~ 96 (730)
... .|+|.|.+|++.|+++|.+
T Consensus 75 ~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 75 YTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 222 8999999999999999964
No 43
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.90 E-value=3.1e-09 Score=97.60 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=65.3
Q ss_pred ceeEEEeeeccc-cccccceeeEEEecce-------eeecccCCCCCCCCCceeEEeecceEEecc------------cc
Q 004783 13 EGWLHLIRSNRI-GLQYSRKRYFLLEDHF-------LKSFKSVPHSKNEDPVRSAIIDSCIRVTDN------------GR 72 (730)
Q Consensus 13 eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~-------l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~------------g~ 72 (730)
||||.+.|.... +..-+++|||||+++- |.|||..++ ..|.+++-++.|..|++. .+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~---~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f 78 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK---FKLEFVIDLESCSQVDPGLLCTAGNCIFGYGF 78 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC---CccceEEECCccEEEcccccccccCcccceEE
Confidence 899999987543 5566899999999876 599997665 689999999998776431 14
Q ss_pred ceecc----cccCCCHHHHHHHHHHHHHH
Q 004783 73 ESIHR----KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 73 ~~~h~----~~~a~~~e~a~~W~~a~~~a 97 (730)
++.+. .|.|.|.||+..||+||.+.
T Consensus 79 ~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 79 DIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 44433 89999999999999999753
No 44
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.90 E-value=4e-09 Score=92.20 Aligned_cols=85 Identities=33% Similarity=0.503 Sum_probs=67.4
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEecc------------ccceecc-
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN------------GRESIHR- 77 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~------------g~~~~h~- 77 (730)
.++|||++++. +..-+++|||||.++.|.|||.........|...+-++++...... ++++.+.
T Consensus 2 ~~~G~L~~~~~---~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 2 IKEGWLLKKSS---SRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEEEEEES---SSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred EEEEEEEEECC---CCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCC
Confidence 58999999992 2333699999999999999999885444789999999999553322 2444333
Q ss_pred ----cccCCCHHHHHHHHHHHHHHH
Q 004783 78 ----KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 78 ----~~~a~~~e~a~~W~~a~~~a~ 98 (730)
.|.|.|.+++..|+++|+.|+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 889999999999999999985
No 45
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.88 E-value=4.3e-09 Score=96.58 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=65.2
Q ss_pred cceeEEEeeecc------ccccccceeeEEEe-cceeeecccCCCCCCCCCceeEEeecceEEec--------cccceec
Q 004783 12 MEGWLHLIRSNR------IGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD--------NGRESIH 76 (730)
Q Consensus 12 ~eGwl~~~g~~~------~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~--------~g~~~~h 76 (730)
+.|||++-+..+ ...-=+++|||||+ +..|+||+.++.+ ..|.+++-+..|..|.+ +++.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~t 78 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDAEARTGQKFSICILT 78 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeecccccCCccEEEEEC
Confidence 579999998874 45566899999997 6899999877422 58888888888888764 3455444
Q ss_pred c----cccCCCHHHHHHHHHHHH
Q 004783 77 R----KLGASSPEEAAKWIHSLQ 95 (730)
Q Consensus 77 ~----~~~a~~~e~a~~W~~a~~ 95 (730)
. -|.|.|.||+++|+++|.
T Consensus 79 p~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 79 PDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred CCceEEEEeCCHHHHHHHHHHHH
Confidence 3 899999999999999986
No 46
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.88 E-value=4.8e-09 Score=95.74 Aligned_cols=83 Identities=24% Similarity=0.269 Sum_probs=64.7
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCc-eeEEeecceEEec-----------cccceecc--
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTD-----------NGRESIHR-- 77 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~-~~~ii~~~~~v~~-----------~g~~~~h~-- 77 (730)
.||||-+.|..=-..--+++|||||+||.|.|||+++. ..|. +++-+..|.-|.. +.|+++..
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~---~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~r 78 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK---DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADK 78 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCc---cCCCCceEEcccceEEeeccccccccccCcEEEEEcCCc
Confidence 48999888774123344799999999999999998876 3566 5666777777643 35565554
Q ss_pred --cccCCCHHHHHHHHHHHHHH
Q 004783 78 --KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 78 --~~~a~~~e~a~~W~~a~~~a 97 (730)
.|.|.|.+|++.|+++|..|
T Consensus 79 t~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 79 TYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred eEEEEeCCHHHHHHHHHHHHhh
Confidence 89999999999999999987
No 47
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.84 E-value=7.5e-09 Score=90.79 Aligned_cols=83 Identities=24% Similarity=0.331 Sum_probs=61.0
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE--Eec-----cccceecc----ccc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTD-----NGRESIHR----KLG 80 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~~-----~g~~~~h~----~~~ 80 (730)
|||||++.+... ...+++|||||+++.|.||+..+... ..|..++-+..|+. +.+ +.|.+... .|.
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~-~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~ 77 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYD-NAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQ 77 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccc-cccceEEeccceEEecCccccCCceEEEEEcCCcEEEEE
Confidence 699999977543 44589999999999999999877531 45666666665543 222 22444433 899
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004783 81 ASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 81 a~~~e~a~~W~~a~~~a 97 (730)
|.|.+|+.+|+.||+.|
T Consensus 78 a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 78 ADSEEERDDWISAIQES 94 (94)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 99999999999999764
No 48
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.80 E-value=1.7e-08 Score=86.50 Aligned_cols=86 Identities=28% Similarity=0.329 Sum_probs=68.9
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEec---------cccceecc----
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD---------NGRESIHR---- 77 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~---------~g~~~~h~---- 77 (730)
.++|||++...+ +.+-+++|||+|.++.|.||+.++......|.+.+.|+++..... +++.+.++
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~ 79 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRS 79 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCce
Confidence 489999998875 556689999999999999999998754468888888998844322 23334433
Q ss_pred -cccCCCHHHHHHHHHHHHHHH
Q 004783 78 -KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 78 -~~~a~~~e~a~~W~~a~~~a~ 98 (730)
.|.|.|.+|+.+|+.+|+.|+
T Consensus 80 ~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 80 YLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999885
No 49
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.79 E-value=5.3e-08 Score=91.70 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=97.2
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004783 189 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 268 (730)
Q Consensus 189 KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyv 268 (730)
+....|+||+++|+++|.|.+ ..++|.+.+.++++++.-+ +...++..+. ++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDE-DELEAELTVG-----FGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCC-CEEEEEEEEe-----eccccEEEEEEEEec--CCCE--
Confidence 456678999999999999999 7999999999999999755 4455566552 345688888654443 2333
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 269 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 269 I~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
|.+.++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|.+ .+.+....+..+| .+|++.+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l---~~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMV---DAFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 35555533 22345789999999865 7999999999999998865 4455566666555 46666554
No 50
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.75 E-value=1.7e-08 Score=95.21 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=68.0
Q ss_pred cccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE--Ee-----ccc----cce--ec
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VT-----DNG----RES--IH 76 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~-----~~g----~~~--~h 76 (730)
++|.|+|...-.-+ |..-+++|||||+|+.|.|||...+...+.|++++-+.+|+. ++ +-. |++ .|
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~ 79 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWR 79 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEec
Confidence 57899999866543 777899999999999999999776655589999999999888 32 112 222 11
Q ss_pred ---------------c-------cccCCCHHHHHHHHHHHHHH
Q 004783 77 ---------------R-------KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 77 ---------------~-------~~~a~~~e~a~~W~~a~~~a 97 (730)
. -|+|.|.||...|++||.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 80 PKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1 67899999999999999764
No 51
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.56 E-value=1.7e-06 Score=81.50 Aligned_cols=141 Identities=10% Similarity=0.046 Sum_probs=85.0
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004783 189 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 268 (730)
Q Consensus 189 KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyv 268 (730)
++...|+|||++|+++|.|.+ ..++|++.+.++++++.-++ ...+|+.... .....+-+.-+.++.... .+....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGN-RVVLEQTGKQ--GILFFKFEARVVLELRER-EEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCC-EEEEEEeeeE--EEEeeeeeEEEEEEEEEe-cCCCce
Confidence 678899999999999999999 79999999999999987433 3334443210 000000011111111111 110111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004783 269 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 269 I~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~-~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+.+..+.. -+ ....|.|.++|.+++.+|+|+|.++++|++.+|.+ .+.+....+. ..+++||+.++
T Consensus 77 i~~~~~~g--------~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~---~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEG--------DF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLP---TNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCC--------ch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 22222211 01 24468999999976337999999999999999864 3333344444 44568887765
No 52
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=3.2e-07 Score=86.26 Aligned_cols=83 Identities=23% Similarity=0.443 Sum_probs=64.5
Q ss_pred cceeEEEeeeccc-c-cc-------------ccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEeccccc---
Q 004783 12 MEGWLHLIRSNRI-G-LQ-------------YSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--- 73 (730)
Q Consensus 12 ~eGwl~~~g~~~~-g-~~-------------~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~g~~--- 73 (730)
.||||++++--+. | +. -+++|||||++.+|.||+.... ..|.+.+++|....|+..+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~---~~~~~vil~D~~f~v~~~~~~~~~ 77 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSS---AQILDVILFDVDFKVNGGGKEDIS 77 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCC---CceeeEEEEcCCccEEeCCccccc
Confidence 4899988754433 2 11 2589999999999999996555 699999999999888754432
Q ss_pred ----------eecc----------cccCCCHHHHHHHHHHHHHH
Q 004783 74 ----------SIHR----------KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 74 ----------~~h~----------~~~a~~~e~a~~W~~a~~~a 97 (730)
..|+ +|.|.|.+++..|+++|+.|
T Consensus 78 ~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 78 LAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1233 99999999999999999876
No 53
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.43 E-value=2.8e-07 Score=84.61 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=62.3
Q ss_pred ccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEecc---c----cceec------c--cccCCCHHH
Q 004783 22 NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN---G----RESIH------R--KLGASSPEE 86 (730)
Q Consensus 22 ~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~---g----~~~~h------~--~~~a~~~e~ 86 (730)
.++..-=+++|||+|+|+.|+|||.+++.+ .+|+..+-.-||.+..|. . ++... + .|.|.|.++
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeq 91 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQ 91 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHH
Confidence 344444469999999999999999998766 799999999999998775 2 22221 1 799999999
Q ss_pred HHHHHHHHHHHHH
Q 004783 87 AAKWIHSLQEAAL 99 (730)
Q Consensus 87 a~~W~~a~~~a~~ 99 (730)
-++||.|++.|+.
T Consensus 92 ya~Wmaa~rlas~ 104 (106)
T cd01237 92 YAKWMAACRLASK 104 (106)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999953
No 54
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.43 E-value=8.7e-07 Score=80.63 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=61.8
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCC--CCCceeEEeecceEEec------cccceecc----c
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAIIDSCIRVTD------NGRESIHR----K 78 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~--~~P~~~~ii~~~~~v~~------~g~~~~h~----~ 78 (730)
.+||||.+++....+ ++.|||+|-+..|-|+|.++.... -.+....-++++...+. ++|.+... .
T Consensus 3 ikeG~L~K~~~~~~~---~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~rsf~ 79 (101)
T cd01219 3 LKEGSVLKISSTTEK---TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNLERPHSFLVSGKQRCLE 79 (101)
T ss_pred ccceEEEEEecCCCC---ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCCCCcCceEEEecCCcEEE
Confidence 479999999875422 589999999999999997654211 23334444666444332 23444322 8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHh
Q 004783 79 LGASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 79 ~~a~~~e~a~~W~~a~~~a~~~ 100 (730)
+.|.|+||..+||+||+.|+++
T Consensus 80 l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 80 LQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred EEcCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999874
No 55
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.42 E-value=6.7e-06 Score=82.89 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=91.3
Q ss_pred cCcHHHHHHHHHhC-CCCccccccccceeEEEEee----------cCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcC
Q 004783 195 DGTSEAIFQTLMSL-GASRSVWDFCFYRGCVVEHL----------DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 263 (730)
Q Consensus 195 dAspe~VfevL~d~-d~~R~eWD~~~~e~~VVE~i----------D~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~ 263 (730)
.++-+++.+.|.+- .++-+++.+.+...+.|+.. ++...|++..+ .+|+|+++|||+.+-......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~---kfp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSY---KFPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEe---ECCCCCCCcEEEEEEEEeccC
Confidence 57777887777752 11457889999999999988 45556666666 578999999999997665533
Q ss_pred ---------CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC------CCCCeeEEEEEEeeeCCCCccccc
Q 004783 264 ---------DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM------NHGKKSVVKHMLAIDWKCWRSYLQ 324 (730)
Q Consensus 264 ---------dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl------~~g~~t~VTyi~qvDpkGwip~~~ 324 (730)
..++++....++|+.+|+.+|+|||.- .+-=.|+-+ ++...-.=++.+..|+||+||.|.
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y-~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQY-ESVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEE-EEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 246999999999999999999999954 343345544 122233344444559999999765
No 56
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=4.9e-07 Score=94.39 Aligned_cols=85 Identities=28% Similarity=0.565 Sum_probs=62.0
Q ss_pred cccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecc-------------------------
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC------------------------- 64 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~------------------------- 64 (730)
.+.||||.+.|.|+. --|.+|||||..|+|+||.--.+ ++|-+.+.+.--
T Consensus 260 pdREGWLlKlgg~rv--ktWKrRWFiLtdNCLYYFe~tTD---KEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~ 334 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRV--KTWKRRWFILTDNCLYYFEYTTD---KEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQV 334 (395)
T ss_pred ccccceeeeecCCcc--cchhheeEEeecceeeeeeeccC---CCCCcceeccccceeeccCCCCCCeEEEecCCCCcCe
Confidence 459999999999844 44899999999999999986665 455444333211
Q ss_pred ---eEEeccccce--ecc--cccCCCHHHHHHHHHHHHHHHH
Q 004783 65 ---IRVTDNGRES--IHR--KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 65 ---~~v~~~g~~~--~h~--~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
|..|.+||=+ -|- ++.|.|+||+..||++++.++.
T Consensus 335 IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 335 IKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred eeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 2234444432 111 9999999999999999999875
No 57
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.36 E-value=1e-06 Score=80.20 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=53.0
Q ss_pred cccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEec---------cccceecc----cccCCCHHHHHH
Q 004783 23 RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD---------NGRESIHR----KLGASSPEEAAK 89 (730)
Q Consensus 23 ~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~---------~g~~~~h~----~~~a~~~e~a~~ 89 (730)
+.+. -+++|||+|.++.|.|||.+. ..|++++-+..-.-|+. +.++++|. .|-|.|.+|+.+
T Consensus 16 ~~~~-n~KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~ 90 (98)
T cd01244 16 KKVL-HFKKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATD 90 (98)
T ss_pred ccCc-CCceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHH
Confidence 5665 469999999999999999554 35666666555444443 34666666 899999999999
Q ss_pred HHHHHHHH
Q 004783 90 WIHSLQEA 97 (730)
Q Consensus 90 W~~a~~~a 97 (730)
|++||+.+
T Consensus 91 Wi~al~k~ 98 (98)
T cd01244 91 WLNALEKQ 98 (98)
T ss_pred HHHHHhcC
Confidence 99999864
No 58
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.35 E-value=7.3e-07 Score=79.64 Aligned_cols=80 Identities=34% Similarity=0.495 Sum_probs=61.8
Q ss_pred eeEEEeeeccccccccceeeEEE--ecceeeecccCCCC--CCCCCceeEEeec----ceEEeccccceecccccCCCHH
Q 004783 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHS--KNEDPVRSAIIDS----CIRVTDNGRESIHRKLGASSPE 85 (730)
Q Consensus 14 Gwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~yk~~p~~--~~~~P~~~~ii~~----~~~v~~~g~~~~h~~~~a~~~e 85 (730)
|||.+.+++++ +=+++||||| +.-.|.||+.+.+. .+..||+.++|.- +++.-|-|-+++|=+ |.|++
T Consensus 1 G~llKkrr~~l--qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~~~~~I~idsg~~i~hLK--a~s~~ 76 (89)
T PF15409_consen 1 GWLLKKRRKPL--QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANKKSRRIDIDSGDEIWHLK--AKSQE 76 (89)
T ss_pred CcceeeccccC--CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecCCCCEEEEEcCCeEEEEE--cCCHH
Confidence 89999888753 3359999999 99999999966652 3467777777643 333556677777655 99999
Q ss_pred HHHHHHHHHHHH
Q 004783 86 EAAKWIHSLQEA 97 (730)
Q Consensus 86 ~a~~W~~a~~~a 97 (730)
+...|+.||+.|
T Consensus 77 ~f~~Wv~aL~~a 88 (89)
T PF15409_consen 77 DFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHhc
Confidence 999999999987
No 59
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.33 E-value=6.1e-07 Score=81.63 Aligned_cols=78 Identities=27% Similarity=0.284 Sum_probs=56.8
Q ss_pred ceeEEEeeeccccccccceeeEEEec----ceeeecccCCCCCCCCCceeEEeecceE--Eecc--c----cceecc---
Q 004783 13 EGWLHLIRSNRIGLQYSRKRYFLLED----HFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTDN--G----RESIHR--- 77 (730)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g----~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~~~--g----~~~~h~--- 77 (730)
-|||.+.|.+. .--+++|||+|.+ +.|.||+..++ .+|++.+-+..+.. |+|. | |+++..
T Consensus 2 ~G~l~K~g~~~--~K~wK~rwF~l~~~~s~~~l~yf~~~~~---~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~ 76 (98)
T cd01245 2 KGNLLKRTKSV--TKLWKTLYFALILDGSRSHESLLSSPKK---TKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALP 76 (98)
T ss_pred CCccccCCCCc--ccccceeEEEEecCCCCceEEEEcCCCC---CCccceeeccccEEEEccccccCCCeEEEEecCCCC
Confidence 49999988632 2337999999998 99999998887 78998444444433 3342 3 555432
Q ss_pred ---cccCCCHHHHHHHHHHHHH
Q 004783 78 ---KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 78 ---~~~a~~~e~a~~W~~a~~~ 96 (730)
.|+|.+ ||+++||++|+.
T Consensus 77 ~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 77 TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred eEEEEeCCH-HHHHHHHHHHhc
Confidence 566666 999999999974
No 60
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.30 E-value=1.4e-05 Score=74.31 Aligned_cols=134 Identities=12% Similarity=0.173 Sum_probs=86.2
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc-eEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCc
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH-TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 266 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~-tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGs 266 (730)
+.....|+|||++|+++|.|.+ ...+|.+.+.++++++.-++. ....+..+. ..++.. +|+.. .......
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~--~~~~~~~- 74 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYALE--YTWDGAG- 74 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEEE--EEEcCCC-
Confidence 5667789999999999999999 799999999999988654432 234454441 112322 44422 2221222
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccc-ccchhhHHHHHHHHHHHHHHH
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALREL 345 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~-~~~~~~i~~~mL~~va~LRe~ 345 (730)
.|.++.+... +.....+.|.++|.++ .|+|+|.++.+++|++|.+. +.+.+.++.. .+.+||++
T Consensus 75 -~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ 139 (140)
T cd07819 75 -SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLDE---ALKGLKKR 139 (140)
T ss_pred -cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHHH---HHHhHhhh
Confidence 2444444321 2333457899999976 59999999999999999653 3333444444 34577765
No 61
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.30 E-value=1.7e-06 Score=77.93 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=64.8
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE--Eec--cc----cceecc-----
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTD--NG----RESIHR----- 77 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~~--~g----~~~~h~----- 77 (730)
..-|||...+..-+ +-=++.|||||..+.|.|||.+.+ ++|...+-+|+... ||+ -+ |+.||-
T Consensus 2 irkgwl~~~n~~~m-~ggsK~~WFVLt~~~L~wykd~ee---KE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnv 77 (110)
T cd01256 2 IRKGWLSISNVGIM-KGGSKDYWFVLTSESLSWYKDDEE---KEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNV 77 (110)
T ss_pred eeeeeEEeecccee-cCCCcceEEEEecceeeeeccccc---ccccceeeccccEEEeecccccCCCcEEEEEcCccccc
Confidence 35799988665432 223599999999999999998776 89999988888765 665 22 334432
Q ss_pred -------cccCCCHHHHHHHHHHHHHH
Q 004783 78 -------KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 78 -------~~~a~~~e~a~~W~~a~~~a 97 (730)
+|+|.|+||+..||-+|=.|
T Consensus 78 ykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 78 YKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccchheeeecCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887
No 62
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.30 E-value=1.1e-06 Score=81.70 Aligned_cols=84 Identities=29% Similarity=0.395 Sum_probs=47.2
Q ss_pred cceeEEEeeeccccccccceeeEEEe-cceeeecccCCCCCC-----CCCceeEEeecceE-Eecc---------cccee
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSKN-----EDPVRSAIIDSCIR-VTDN---------GRESI 75 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~~-----~~P~~~~ii~~~~~-v~~~---------g~~~~ 75 (730)
+|||||+.+.. +|.. +++|||||. ++.|.|||...+..+ +.+.+...-+...+ +... -+..+
T Consensus 1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 68999998875 7777 499999999 999999998332110 12222222111111 1111 11112
Q ss_pred cc------------cccCCCHHHHHHHHHHHHHH
Q 004783 76 HR------------KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 76 h~------------~~~a~~~e~a~~W~~a~~~a 97 (730)
|. -|-|.+-+|-..|++||+.|
T Consensus 79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 22 68899999999999999986
No 63
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.30 E-value=1.6e-06 Score=74.13 Aligned_cols=83 Identities=27% Similarity=0.349 Sum_probs=59.5
Q ss_pred cceeEEEeeeccc-cccccceeeEEEecceeeecccCCCCCCC---CCceeEEeecceEEe-----ccccceecc-----
Q 004783 12 MEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNE---DPVRSAIIDSCIRVT-----DNGRESIHR----- 77 (730)
Q Consensus 12 ~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~---~P~~~~ii~~~~~v~-----~~g~~~~h~----- 77 (730)
.+|||.+.+.... +...+++|||+|.++.|.||+.++..... .|+..+. +...+ ++.|.+.++
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~---v~~~~~~~~~~~~F~i~~~~~~~~ 77 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS---VEEDPDGSDDPNCFAIVTKDRGRR 77 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE---EEECCCCCCCCceEEEECCCCCcE
Confidence 4799999998754 45668999999999999999999864322 3333322 11222 244554322
Q ss_pred --cccCCCHHHHHHHHHHHHHH
Q 004783 78 --KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 78 --~~~a~~~e~a~~W~~a~~~a 97 (730)
.|.|.|.+|+..||+||++|
T Consensus 78 ~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 78 VFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEEEEcCCHHHHHHHHHHHhcC
Confidence 89999999999999999875
No 64
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.25 E-value=3.3e-06 Score=76.53 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred cceeEEEeee-----ccccccccceeeEEEecceeeecccCCCCCCCCCce--eEEeecceEEec-c--c----ccee--
Q 004783 12 MEGWLHLIRS-----NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVR--SAIIDSCIRVTD-N--G----RESI-- 75 (730)
Q Consensus 12 ~eGwl~~~g~-----~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~--~~ii~~~~~v~~-~--g----~~~~-- 75 (730)
|||+|++.-. ++-+...+++|||||.|+.|.|||.+.... +.+.+ .+-+++++...+ . + |++.
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~ 79 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLP 79 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCCEEEecCCcccCceEEEEEec
Confidence 6899985433 445567799999999999999999665321 11111 222444443221 1 2 4432
Q ss_pred cc---cccCCCHHHHHHHHHHHHHH
Q 004783 76 HR---KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 76 h~---~~~a~~~e~a~~W~~a~~~a 97 (730)
+| .|.|.|.|++.+|+.||+.|
T Consensus 80 ~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 80 DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 33 89999999999999999753
No 65
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.22 E-value=2.3e-06 Score=72.46 Aligned_cols=84 Identities=27% Similarity=0.314 Sum_probs=64.6
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEe-------ccccceecc-----cc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVT-------DNGRESIHR-----KL 79 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~-------~~g~~~~h~-----~~ 79 (730)
++|||++....+ .+-+++|||+|.++.|.+|+..+......|...+.|+++.... ++.+.+.+. .|
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~ 78 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLL 78 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEE
Confidence 589999988654 4557999999999999999988764335777888888755532 234555333 88
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 004783 80 GASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 80 ~a~~~e~a~~W~~a~~~a 97 (730)
.|.|.+|+.+|+.+|+.|
T Consensus 79 ~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 79 QAESEEEREEWIEALQSA 96 (96)
T ss_pred EeCCHHHHHHHHHHHhcC
Confidence 999999999999999864
No 66
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.16 E-value=5.3e-06 Score=75.58 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=61.6
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCC-CCCceeEEeecceE--Eec-----cccceecc----c
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-EDPVRSAIIDSCIR--VTD-----NGRESIHR----K 78 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~-~~P~~~~ii~~~~~--v~~-----~g~~~~h~----~ 78 (730)
.+||||.++++. + .++|||+|=...|=|+.+.+..+. -.+-+.+-+++... ++| |+++++.. .
T Consensus 3 ikEG~L~K~~~k--~---~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~ 77 (99)
T cd01220 3 IRQGCLLKLSKK--G---LQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAIT 77 (99)
T ss_pred eeEEEEEEEeCC--C---CceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEE
Confidence 379999998764 2 377888888888888887765331 23445555666654 333 46776655 8
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 004783 79 LGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 79 ~~a~~~e~a~~W~~a~~~a~~ 99 (730)
+.|.|+||..+||++|+.|++
T Consensus 78 l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 78 VAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EECCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999986
No 67
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.05 E-value=8.4e-05 Score=69.34 Aligned_cols=140 Identities=8% Similarity=-0.115 Sum_probs=84.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 267 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsy 267 (730)
+++...|++||++|+++|.|.+ ...+|.+.+...++++ ++...++.+.+. ++...|.-...++....++..+
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcEE
Confidence 6778889999999999999999 7999999988866653 444445555421 3444444333333332233444
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH-HHHHHHHHHH
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML-GRVAALRELF 346 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL-~~va~LRe~~ 346 (730)
.+...... + .+.....+.|.|+|.+ + .|+|+|.++++++|.+..+...+.....-+++ ..+.+||+.+
T Consensus 75 ~~~~~~~~-~--------~~~~~~~~~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGKG-G--------AGFVKGTARVTLEPDG-G-GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEcC-C--------CceEEEEEEEEEEecC-C-cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44433221 1 1222446799999984 3 69999999999999763332222222323322 3445566543
No 68
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.95 E-value=0.00017 Score=67.66 Aligned_cols=137 Identities=14% Similarity=0.079 Sum_probs=80.3
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEE--EEEEEcCCCcE
Q 004783 190 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR--RYWRREDDGTY 267 (730)
Q Consensus 190 avgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~l--R~wrr~~dGsy 267 (730)
...+|+|||++||++|.|++ ..++|.+. ...++++. ++....++.. .+..++..+. ..+..+..+..
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE
Confidence 35679999999999999999 68899998 77787765 3444344421 2222333222 11122222332
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
|.+..+.-+ + +.....|.|.++|.+++ +|+|+|.+..++++.+|-........+.-.+-..+++||++++
T Consensus 72 -i~~~~~~~~------~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 72 -IVFRQEEPP------P--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred -EEEEEeeCC------C--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 333333210 1 12234579999999754 7999999999999987721111111221223344667777654
No 69
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.83 E-value=0.00037 Score=64.53 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=77.3
Q ss_pred ecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEe
Q 004783 194 VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHS 273 (730)
Q Consensus 194 VdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~S 273 (730)
|+||+++|++++.|.+ ..++|.+.+.++++|+.-+++..+ .... ......+.|+....... ... +.+..
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~--~~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEV-----KFGGIKRSWTSRVTEDP--PER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEE-----CTTTTCEEEEEEEEEEC--TTT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEE-----ecCCEEEEEEEEEEEEE--eee--eeeee
Confidence 6899999999999999 799999999999999986664433 3333 12344466655444433 222 33333
Q ss_pred cCCCCCCCCCCeEEEEEeceEEEEEeCCC---CCeeEEEEEEeeeCCCCcccc
Q 004783 274 VFHKKCPRQKGSVRACLKSGGYVITPMNH---GKKSVVKHMLAIDWKCWRSYL 323 (730)
Q Consensus 274 V~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~---g~~t~VTyi~qvDpkGwip~~ 323 (730)
+. |- .....|.|.++|.++ +.+|.|++.+..+|++++|..
T Consensus 70 ~~--------g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~ 112 (130)
T PF03364_consen 70 IS--------GP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGF 112 (130)
T ss_dssp SE--------TT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHH
T ss_pred cC--------CC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHH
Confidence 32 21 234578999999986 778999999999999999864
No 70
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.77 E-value=0.00011 Score=69.16 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=61.1
Q ss_pred cceeEEEee-------eccccccccceeeEEEecceeeecccCCCCC---C-CCCceeEEeecce-EEe-cc-c----cc
Q 004783 12 MEGWLHLIR-------SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---N-EDPVRSAIIDSCI-RVT-DN-G----RE 73 (730)
Q Consensus 12 ~eGwl~~~g-------~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~-~~P~~~~ii~~~~-~v~-~~-g----~~ 73 (730)
+||+|++.- ..+.|..+|++||.||+|+.|..||.+-... . ..+-..+-|.+++ .++ |. . |+
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~ 81 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFR 81 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEE
Confidence 578888753 2346788999999999999999999884311 0 1222444577776 322 21 1 22
Q ss_pred ee--cc---cccCCCHHHHHHHHHHHHHHHH
Q 004783 74 SI--HR---KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 74 ~~--h~---~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
+. .| -|-|.+.|||.+|+.+|..|+.
T Consensus 82 L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 82 LRTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 22 22 7889999999999999998865
No 71
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.67 E-value=0.0016 Score=60.51 Aligned_cols=135 Identities=9% Similarity=-0.035 Sum_probs=82.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 267 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsy 267 (730)
+.....|+||+++||+++.|.+ ..++|.+.+.+++++.. ... .+.++ .|+ ...++|.... .. ...+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~---~~~~~---~~~-g~~~~~~~~v-~~-~~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRS---HWKAK---GPA-GLSVEWDAEI-TE-QVPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--Cce---EEEEe---cCC-CCcEEEEEEE-ec-cCCCCE
Confidence 4567789999999999999999 79999999998877642 122 22221 233 4455665432 12 223433
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-ccccchhhHHHH-HHHHHHHHHHH
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQPSSARSITIR-MLGRVAALREL 345 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~-~~~~~~~~i~~~-mL~~va~LRe~ 345 (730)
|.+.....+. ...+.|.++|.+++ +|+|+|.++.++.+.++. +...+...+..+ +-..+.+||++
T Consensus 70 -i~~~~~~~~~-----------~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGAD-----------PNAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCCC-----------CcceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444433211 13467889998754 799999999999987764 222122233333 33455667766
Q ss_pred HH
Q 004783 346 FR 347 (730)
Q Consensus 346 ~~ 347 (730)
++
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 54
No 72
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.64 E-value=0.0018 Score=59.62 Aligned_cols=138 Identities=16% Similarity=0.090 Sum_probs=80.8
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCc
Q 004783 187 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 266 (730)
Q Consensus 187 ~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGs 266 (730)
.++....|+||+++||++|.|.+ ...+|.+.+...++++.-++--.+....+. .. +.+. .+.... ++..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g---~~~~-~~i~~~-~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTLK-----DG---GTVR-ERLLAL-DDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEeC-----CC---CEEE-EEehhc-CccC
Confidence 36778899999999999999998 688999998888877643211122222221 11 2221 111111 2331
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
..+.+..+.- ..| .....+.|.++|.+++ +|+|+|.++.+++|.++... ....+--.+-..+++|++++
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDEL--ARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 2344444321 011 1233578999999764 79999999999998755321 11122222334566787765
No 73
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.60 E-value=0.0026 Score=61.66 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=83.2
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEE--E-EcCCCc
Q 004783 190 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYW--R-REDDGT 266 (730)
Q Consensus 190 avgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~w--r-r~~dGs 266 (730)
-..+|+++|++||+++-|++ ..++|.+.+..+++++. +++...+-..+ |.. ... + ...| + ..+...
T Consensus 5 ~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i---~~~--~~g--~--~~~w~s~~~~~~~~ 73 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTM---HPD--ANG--T--VWSWVSERTLDPVN 73 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEE---Eec--cCC--E--EEEEEEEEEecCCC
Confidence 35679999999999999999 79999999999999985 45444443433 111 111 2 1222 1 223334
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
+.|.++.+ +. +|- ....+.|.++|++++ |+|+|.+....++-.|.........+--.+-..+++||+.+
T Consensus 74 ~~i~~~~~--~~-~p~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~a 142 (146)
T cd08860 74 RTVRARRV--ET-GPF------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKI 142 (146)
T ss_pred cEEEEEEe--cC-CCc------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHh
Confidence 44555422 22 221 134678999999764 99999999987642332111122222222445567888887
Q ss_pred Hh
Q 004783 347 RA 348 (730)
Q Consensus 347 ~~ 348 (730)
+.
T Consensus 143 E~ 144 (146)
T cd08860 143 EA 144 (146)
T ss_pred hh
Confidence 65
No 74
>PRK10724 hypothetical protein; Provisional
Probab=97.49 E-value=0.0029 Score=62.36 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcC
Q 004783 184 DHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 263 (730)
Q Consensus 184 ~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~ 263 (730)
..+.++...+|++|++++|+++.|++ ..++|-+.+.+++++++-++.. +...+.. +. .+ ..-|+....+. .
T Consensus 13 ~M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~-~a~l~v~---~~-g~-~~~f~srv~~~--~ 83 (158)
T PRK10724 13 VMPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQM-TAAVDVS---KA-GI-SKTFTTRNQLT--S 83 (158)
T ss_pred cCCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEE-EEEEEEe---eC-Cc-cEEEEEEEEec--C
Confidence 35678888999999999999999999 7999999999999999865542 2222221 11 12 34454444442 2
Q ss_pred CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004783 264 DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 322 (730)
Q Consensus 264 dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~ 322 (730)
++ .|....++.| . ....|.|.++|++++ .|+|++.++.+++-.++.
T Consensus 84 ~~--~I~~~~~~Gp--------F--~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~ 129 (158)
T PRK10724 84 NQ--SILMQLVDGP--------F--KKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIE 129 (158)
T ss_pred CC--EEEEEecCCC--------h--hhccceEEEEECCCC-CEEEEEEEEEEEchHHHH
Confidence 33 3444555422 1 235789999999754 699999999998887764
No 75
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.24 E-value=0.038 Score=50.86 Aligned_cols=134 Identities=10% Similarity=0.091 Sum_probs=75.2
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 267 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsy 267 (730)
+.....|+|+|++||++|.|+. ...+|.+.+...+++.. +...+. ..+.. .+. .-+..+....++++..
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~~--~~~~~~-~~~~~---~g~----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLSG--GGPGTE-RTVRV---AGR----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEEE--CSTEEE-EEEEE---CSC----SEEEEEEEEEETTTTE
T ss_pred EEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEccc--ccccee-EEEEe---ccc----cceeEEEEEecCCCcE
Confidence 4566789999999999999998 68899999998887762 322221 22211 111 2233333333332443
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccccc-chhhHHHHHHHHHHHHHHHH
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS-SARSITIRMLGRVAALRELF 346 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~-~~~~i~~~mL~~va~LRe~~ 346 (730)
+-. +.+ ..++.. ..+.|.+.|.+++ |.|++..+.++ |+...+... +...+--.+-..+++|++.+
T Consensus 73 ~~~-~~~-------~~~~~~---~~~~~~~~~~~~g--t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 73 ITW-RFV-------PSGFTN---GTGRWRFEPVGDG--TRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEE-EEE-------SSSSCE---EEEEEEEEEETTT--EEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-EEE-------ecceeE---EEEEEEEEEcCCC--EEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 333 222 122222 2567999998865 99999999998 333222111 11222222334566676665
No 76
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.10 E-value=0.00039 Score=75.15 Aligned_cols=87 Identities=30% Similarity=0.488 Sum_probs=65.6
Q ss_pred ccccceeEEEeeeccccccccceeeEEEe--cceeeecccCCCCC--CCCCceeEEe-ecceEEeccccc---eecc---
Q 004783 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHSK--NEDPVRSAII-DSCIRVTDNGRE---SIHR--- 77 (730)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~--g~~l~~yk~~p~~~--~~~P~~~~ii-~~~~~v~~~g~~---~~h~--- 77 (730)
.+..||||.++|.+ |- .||.|||+|+ |.++ =||.||.+. ...|+---.| |+-+|-.|+-|- |+.+
T Consensus 14 ~vvkEgWlhKrGE~-Ik--nWRpRYF~l~~DG~~~-Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQW 89 (516)
T KOG0690|consen 14 DVVKEGWLHKRGEH-IK--NWRPRYFLLFNDGTLL-GYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQW 89 (516)
T ss_pred hhHHhhhHhhcchh-hh--cccceEEEEeeCCceE-eeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeee
Confidence 34599999999997 32 3799999996 4444 578899863 3688887665 445666666543 2333
Q ss_pred ------cccCCCHHHHHHHHHHHHHHHH
Q 004783 78 ------KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 78 ------~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
++.+.|+++-.+|++|++..+.
T Consensus 90 TTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 90 TTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998875
No 77
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.95 E-value=0.023 Score=52.22 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=72.8
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeec--CceEEEEEEEcCCCCCCCCCCceEEE-EEEEEEcCCCc
Q 004783 190 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD--GHTDIIHKQLYSDWLPWGMKRRDLLL-RRYWRREDDGT 266 (730)
Q Consensus 190 avgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD--~~tdIvY~~~~~~~lP~pvs~RDFV~-lR~wrr~~dGs 266 (730)
....|+||+++|+++|.|.+ ...+|++.+..++.+..-. ..+ .+..... ++ . ..+-. .+.... ..+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~-~~~~~~~---~~-g---~~~~~~~~v~~~-~p~~ 72 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGT-RYHQVRK---FL-G---RRIELTYEITEY-EPGR 72 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCcc-EEEEEEE---ec-C---ceEEEEEEEEEe-cCCc
Confidence 45679999999999999999 6899999988777664211 011 2222221 01 1 11111 111111 2333
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 346 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~ 346 (730)
++ .+.... +.++ ..+-|.+.|.++ .|.|+|....+++++...+...+...+-..+-..+.+|++.+
T Consensus 73 ~~-~~~~~~--------~~~~---~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 73 RV-VFRGSS--------GPFP---YEDTYTFEPVGG--GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EE-EEEecC--------CCcc---eEEEEEEEEcCC--ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 32 222221 1122 256899999865 599999999999776432211122222112334555666665
Q ss_pred H
Q 004783 347 R 347 (730)
Q Consensus 347 ~ 347 (730)
+
T Consensus 139 e 139 (140)
T cd08865 139 E 139 (140)
T ss_pred h
Confidence 4
No 78
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.79 E-value=0.0015 Score=59.87 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=61.1
Q ss_pred cceeEEEeeeccccccccceeeEEEecce-----eeecccCCCCCCCCCceeEEeecceE-----Eec---------ccc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHF-----LKSFKSVPHSKNEDPVRSAIIDSCIR-----VTD---------NGR 72 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~-----l~~yk~~p~~~~~~P~~~~ii~~~~~-----v~~---------~g~ 72 (730)
++|||++.|.+..-. +++|||||.|-- +..|+.|.. +|-..+.+||.++ ... -||
T Consensus 4 ~sGyL~k~Gg~~~Kk--WKKRwFvL~qvsQYtfamcsy~ekks----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~ 77 (117)
T cd01234 4 HCGYLYAIGKNVWKK--WKKRFFVLVQVSQYTFAMCSYREKKA----EPTEFIQLDGYTVDYMPESDPDPNSELSLQGGR 77 (117)
T ss_pred eeEEEEeccchhhhh--hheeEEEEEchhHHHHHHHhhhhhcC----CchhheeecceEEeccCCCCCCcccccccccch
Confidence 899999999966655 699999999642 345666654 6777888999998 111 123
Q ss_pred ceecc-------cccCCCHHHHHHHHHHHHHHH
Q 004783 73 ESIHR-------KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 73 ~~~h~-------~~~a~~~e~a~~W~~a~~~a~ 98 (730)
--|+. ++|+.+..|---|+.|+=.|-
T Consensus 78 ~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 78 HFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred hhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 33443 899999999999999999983
No 79
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.58 E-value=0.086 Score=50.29 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=64.3
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe-ecCceEEEE-EEEcCCCCCCCCCCceEEEEEEEEEcCCC
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH-LDGHTDIIH-KQLYSDWLPWGMKRRDLLLRRYWRREDDG 265 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~-iD~~tdIvY-~~~~~~~lP~pvs~RDFV~lR~wrr~~dG 265 (730)
|-....|+|||++||+++.|++ ...+|.+.+.+.++++. -+......+ +.... ..+..+...-.....+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 3446789999999999999999 79999999999888862 222221222 22111 111223222111111223
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004783 266 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 318 (730)
Q Consensus 266 syvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkG 318 (730)
..+.. ... .+ .++ .+.|.|+|.++ .|.|++-..++.+|
T Consensus 76 ~~~~~-~~~-g~--------~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 76 SLLEV-RAS-GD--------LEG---VGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred cEEEE-EEE-Ee--------eeE---EEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 22222 221 11 222 36899999754 59999999999887
No 80
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.53 E-value=0.061 Score=51.33 Aligned_cols=141 Identities=10% Similarity=-0.021 Sum_probs=75.8
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcC-CC-c
Q 004783 189 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DG-T 266 (730)
Q Consensus 189 KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~-dG-s 266 (730)
+....|+|+|+.|+++|.|++ ....|.+.++..+ .+++++-..-.+.+. .+++ ..|-..-.+.... .+ .
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg~~~~~---~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPGASLTE---VEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCCceecc---ccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcE
Confidence 345679999999999999998 6778877655544 345444333333311 1222 1221111111111 22 2
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH-HHHHHHHHH
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML-GRVAALREL 345 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL-~~va~LRe~ 345 (730)
+.+...... ....|.+++.+ -|.+.| +++ .|+|+|.+.++.+|.++.+.........-+++ ..+++|++.
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~~---~~~l~~-~~~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEATV---TLRLSP-AGG-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEEEec----CCCcceEEEEE---EEEEEe-cCC-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 222211110 01112333332 688998 333 69999999999999998765444444444444 334456665
Q ss_pred HH
Q 004783 346 FR 347 (730)
Q Consensus 346 ~~ 347 (730)
++
T Consensus 144 ~e 145 (146)
T cd07823 144 LA 145 (146)
T ss_pred hc
Confidence 43
No 81
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.49 E-value=0.12 Score=45.85 Aligned_cols=114 Identities=14% Similarity=-0.002 Sum_probs=66.3
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004783 189 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 268 (730)
Q Consensus 189 KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyv 268 (730)
+....|+||+++||++|.|.+ ...+|.+.+..++++..........+... . . +....++.. +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGVGARFVGG---R-K-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccceeEEEEE---e-c-CCccccceE-EEEEecCCCceE
Confidence 456789999999999999999 79999999999887764222111111111 0 0 011111111 111111111111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 004783 269 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 321 (730)
Q Consensus 269 I~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip 321 (730)
....+..+. ....+.|.++|.+++ .|+|++....+++++.+
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCCC-cEEEEEEEEEecCCcch
Confidence 111111111 244678999998752 69999999999999874
No 82
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=96.31 E-value=0.00077 Score=77.06 Aligned_cols=89 Identities=26% Similarity=0.297 Sum_probs=72.1
Q ss_pred CCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccc
Q 004783 246 WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 325 (730)
Q Consensus 246 ~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~ 325 (730)
.|...|||+++| |.++++..|++|...+...| |||.+....|.|+|++.+ +++|+|+..+|++|..|.|++
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 367899999998 78999999999987778888 999999999999999887 789999999999999996654
Q ss_pred c-chhhHHHHHHHHHHHHHHHHH
Q 004783 326 S-SARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 326 ~-~~~~i~~~mL~~va~LRe~~~ 347 (730)
. |...+.. .++.+|+.|.
T Consensus 645 k~fg~~c~~----~~~~~r~sf~ 663 (674)
T KOG2200|consen 645 KSFGHLCCL----EVARIRDSFH 663 (674)
T ss_pred ccccchhhh----hhcccchhhc
Confidence 4 5443332 3445666554
No 83
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=96.30 E-value=0.012 Score=55.27 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=51.1
Q ss_pred cceeEEEee-----eccc--cccccceeeEEEecceeeecccCCC--C---------CCCCCceeEEeecceEEeccc--
Q 004783 12 MEGWLHLIR-----SNRI--GLQYSRKRYFLLEDHFLKSFKSVPH--S---------KNEDPVRSAIIDSCIRVTDNG-- 71 (730)
Q Consensus 12 ~eGwl~~~g-----~~~~--g~~~~~~Ryfvl~g~~l~~yk~~p~--~---------~~~~P~~~~ii~~~~~v~~~g-- 71 (730)
+||||++.- ..|- +..-++.=|.||+|..|.+||.+.. . +...|+.++-|.+++-....+
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 589999842 1223 5666889999999999999998421 0 113466677788777643332
Q ss_pred -----cc--eecc---cccCCCHHHHHHHHHHHHHHH
Q 004783 72 -----RE--SIHR---KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 72 -----~~--~~h~---~~~a~~~e~a~~W~~a~~~a~ 98 (730)
|+ +-.| -|-|.|.|||..|+.+|..++
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 12 1223 788999999999999998774
No 84
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.18 E-value=0.012 Score=55.16 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=34.2
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCC--CCCCceeEE
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAI 60 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~P~~~~i 60 (730)
+||||.|+-..---+ +++|++|+.|.+.||+.+-... .+.|+.-++
T Consensus 2 kEGWmVHyT~~d~~r---KRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl 49 (117)
T cd01239 2 KEGWMVHYTSSDNRR---KKHYWRLDSKAITLYQEESGSRYYKEIPLAEIL 49 (117)
T ss_pred ccceEEEEecCccce---eeeEEEecCCeEEEEEcCCCCeeeEEeehHHhe
Confidence 699999987754333 7889999999999999876532 155555444
No 85
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=95.94 E-value=0.036 Score=52.46 Aligned_cols=88 Identities=25% Similarity=0.337 Sum_probs=60.8
Q ss_pred cceeEEEeeecc--ccccccceeeEEEec--ceeeecccCCCCC-C-CCCceeEEeecceEEecc-----ccc--eecc-
Q 004783 12 MEGWLHLIRSNR--IGLQYSRKRYFLLED--HFLKSFKSVPHSK-N-EDPVRSAIIDSCIRVTDN-----GRE--SIHR- 77 (730)
Q Consensus 12 ~eGwl~~~g~~~--~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~-~-~~P~~~~ii~~~~~v~~~-----g~~--~~h~- 77 (730)
.-.|||+++++. .+..=.|.|||-|.. ..|.....+|... . ..=.+++.|+.=..|.+. |++ .++.
T Consensus 11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~s 90 (123)
T PF12814_consen 11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKS 90 (123)
T ss_pred cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceE
Confidence 446999998875 112346999999999 6677777777532 1 233455667766666655 330 1111
Q ss_pred ----------cccCCCHHHHHHHHHHHHHHHH
Q 004783 78 ----------KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 78 ----------~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
+|.|.+.++++.|+.+|+..++
T Consensus 91 i~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 91 IIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999997754
No 86
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.89 E-value=0.032 Score=51.50 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=55.5
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCC-----CCCCceeEEeecceEEec-----cccceecc---
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-----NEDPVRSAIIDSCIRVTD-----NGRESIHR--- 77 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-----~~~P~~~~ii~~~~~v~~-----~g~~~~h~--- 77 (730)
.+||=|.++-+ -+. +.|||+|=...|=|=+..+..+ ...|+....|. -++| ||++|...
T Consensus 5 i~eG~L~K~~r--k~~---~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~---~~~d~~~~~n~f~I~~~~kS 76 (104)
T cd01218 5 VGEGVLTKMCR--KKP---KQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVE---SIEDDGIERNGWIIKTPTKS 76 (104)
T ss_pred EecCcEEEeec--CCC---ceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEE---ecCCcccccceEEEecCCeE
Confidence 47888888663 333 6799999999887744322211 12344433221 0233 57777666
Q ss_pred -cccCCCHHHHHHHHHHHHHHHHh
Q 004783 78 -KLGASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 78 -~~~a~~~e~a~~W~~a~~~a~~~ 100 (730)
.+.|.|++|..+||++|++|+++
T Consensus 77 f~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 77 FAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999985
No 87
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.68 E-value=0.52 Score=43.49 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEee
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHL 228 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~i 228 (730)
+....+|+||+++|++++.|++ ...+|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCC
Confidence 4567789999999999999998 689999998888777543
No 88
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.66 E-value=0.017 Score=53.78 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=55.3
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEE------------eccccce-ecc
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRV------------TDNGRES-IHR 77 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v------------~~~g~~~-~h~ 77 (730)
+.|||||.... |+.=+.+|||||++.=|.|+-+....+...-..-+..+++-+- +|+||-+ .+.
T Consensus 1 e~~g~LylK~~---gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYLKAD---GKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEEccC---CCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 36999999654 5555799999999999988765543221211222334443331 2333222 111
Q ss_pred ----------cccCCCHHHHHHHHHHHHHHH
Q 004783 78 ----------KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 78 ----------~~~a~~~e~a~~W~~a~~~a~ 98 (730)
.|.|.+.+....||-||+-|.
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 789999999999999999885
No 89
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.52 E-value=0.042 Score=51.42 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=60.3
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCCCC-------------CCCCceeEEeecc--eEEecccccee
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-------------NEDPVRSAIIDSC--IRVTDNGRESI 75 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-------------~~~P~~~~ii~~~--~~v~~~g~~~~ 75 (730)
.+||=|.++...+ |. .+.|||+|=.+.|=|=|++.... ...+++.+-|.-. ..-..|+|+++
T Consensus 5 I~EG~L~ki~~~~-~~--~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~ 81 (112)
T cd01261 5 IMEGTLTRVGPSK-KA--KHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEII 81 (112)
T ss_pred cccCcEEEEeccc-CC--cceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEE
Confidence 4899999988654 44 38999999999998888765411 0134444333211 00114678887
Q ss_pred cc-----cccCCCHHHHHHHHHHHHHHHH
Q 004783 76 HR-----KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 76 h~-----~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
++ .|-|.|+||-.+||++|..|+.
T Consensus 82 ~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 82 LKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred cCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 64 8999999999999999999865
No 90
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.45 E-value=0.46 Score=44.95 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.7
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE
Q 004783 187 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV 225 (730)
Q Consensus 187 ~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VV 225 (730)
-++...+|++|+++||+++.|+. ...+|++.+.....+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~ 40 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDM 40 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcce
Confidence 35667789999999999999999 799999977765544
No 91
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.35 E-value=0.02 Score=68.85 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=75.2
Q ss_pred cccccccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE--Eecc-----ccc-eecc
Q 004783 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTDN-----GRE-SIHR 77 (730)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~~~-----g~~-~~h~ 77 (730)
....|.|-|+|+.+-.. =|.-=||+||.+|.|+...|+|---++..+.||+.+=+-.||. ||+- ||. +||=
T Consensus 986 ~~idVEYrGFLtmfed~-sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhi 1064 (1116)
T KOG3640|consen 986 DAIDVEYRGFLTMFEDG-SGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHI 1064 (1116)
T ss_pred cccceeeeeeeeeeecc-CCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEE
Confidence 44567799999998743 3444499999999999999999555556799999999999998 4432 554 4654
Q ss_pred ---------------------cccCCCHHHHHHHHHHHHHHHHh
Q 004783 78 ---------------------KLGASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 78 ---------------------~~~a~~~e~a~~W~~a~~~a~~~ 100 (730)
.|||.+.||-..|+.+|-.+..+
T Consensus 1065 e~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1065 EVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 79999999999999999988653
No 92
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.23 E-value=1 Score=41.37 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=58.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 267 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsy 267 (730)
+....+|+||+++||++|.|.+ ....|.+.+...+... +...+.+.+... . +. .+.+.........+.+.+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~-~~~G~~~~~~~~-~---~~---~~~~~~~~~v~~~~p~~~ 72 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATGLS-LALGARLRFVVK-L---PG---GPPRSFKPRVTEVEPPRR 72 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEeccc-cCCCCEEEEEEe-C---CC---CCcEEEEEEEEEEcCCCE
Confidence 4567789999999999999998 7899998766544331 233333433322 1 11 122332222222233333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 313 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~q 313 (730)
+ .+....- +. +.. .....|.++|.+++ .|++++...
T Consensus 73 ~-~~~~~~~---~~--~~~---~~~~~~~~~~~~~~-~T~~~~~~~ 108 (141)
T cd07822 73 L-AWRGGLP---FP--GLL---DGEHSFELEPLGDG-GTRFVHRET 108 (141)
T ss_pred e-EEEecCC---CC--cEe---eEEEEEEEEEcCCC-cEEEEEeeE
Confidence 3 3333221 11 111 23358999998544 688888643
No 93
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=94.78 E-value=1.3 Score=42.24 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=75.5
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcEEE
Q 004783 190 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 269 (730)
Q Consensus 190 avgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI 269 (730)
+.-.|++++++|+++|.|++ .|-.++..++.++.++ +.--.-.+.+ . .+++.+=-..++....+++..+.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~----~l~~ciPG~~~~e~~~-~~~~~~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPE----NLARCIPGVESIEKVG-DEYKGKVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HH----HHHHHSTTEEEEEEEC-TEEEEEEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCHH----HHHhhCCCcEEeeecC-cEEEEEEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 34578999999999999865 8999999999999988 4332223332 1 345544334444444445555545
Q ss_pred EEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH
Q 004783 270 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML 336 (730)
Q Consensus 270 ~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL 336 (730)
....... .+-+.+.. --.+...+++. |+|+|-..++..|.+..+.........-+|+
T Consensus 72 ~~~g~g~------~~~~~~~~---~~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~ 128 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASA---NITLSLEDDGG-TRVTWSADVEVGGPLASLGQRLIESVARRLI 128 (140)
T ss_dssp EEEEEEC------TCCEEEEE---EEEEEECCCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHH
T ss_pred eeeccCC------ccceEEEE---EEEEEcCCCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHH
Confidence 5444431 12233322 22244444454 9999999999999987664433334433333
No 94
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=94.12 E-value=0.069 Score=61.05 Aligned_cols=88 Identities=24% Similarity=0.316 Sum_probs=56.2
Q ss_pred ccccccceeEEEeeeccccccccceeeEEEecceeeeccc-CCCCCCCCCceeEE--eecceEE-------eccccce--
Q 004783 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHSKNEDPVRSAI--IDSCIRV-------TDNGRES-- 74 (730)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~~~~~P~~~~i--i~~~~~v-------~~~g~~~-- 74 (730)
.+.+.++||+++++... . +++|||.|++..+..... .|......|-.+.+ +..++-| .++.+.+
T Consensus 374 ~sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~ 449 (478)
T PTZ00267 374 TSDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWF 449 (478)
T ss_pred cCCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEe
Confidence 45667999999998742 2 799999999888777543 44432232222223 4444433 1222222
Q ss_pred ecc---cccCCCHHHHHHHHHHHHHHH
Q 004783 75 IHR---KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 75 ~h~---~~~a~~~e~a~~W~~a~~~a~ 98 (730)
.+| -+-|.|.+|.+.||++|+.|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 450 NNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 123 455799999999999999984
No 95
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.68 E-value=0.24 Score=46.89 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=59.7
Q ss_pred cccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCC---CCCceeEEe-ecceEEeccc--------------
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN---EDPVRSAII-DSCIRVTDNG-------------- 71 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~---~~P~~~~ii-~~~~~v~~~g-------------- 71 (730)
..|||||-.-..+++++ =|.++|.||.+.-|+.|....+... .+|.-.+-+ |+-.-|..-.
T Consensus 2 t~~EGwvkvP~~~~~kr-GW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKK-GWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCccc-CceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 36999998877766666 4899999999999999997775321 344444444 4444432111
Q ss_pred -cce-ecc----------cccCCCHHHHHHHHHHHHHH
Q 004783 72 -RES-IHR----------KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 72 -~~~-~h~----------~~~a~~~e~a~~W~~a~~~a 97 (730)
|++ .|- -|=|.|-.|-.+|..||++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 221 111 56689999999999999975
No 96
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.35 E-value=0.36 Score=45.08 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=53.2
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCcee-EEeecceEEe-------------ccccceecc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRS-AIIDSCIRVT-------------DNGRESIHR 77 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~-~ii~~~~~v~-------------~~g~~~~h~ 77 (730)
|+|=|.++..+ .|. .+.|+|.|=.++|=|=|++-...+.-=.|- +.++.+.++. -||++++|.
T Consensus 4 ~~Gel~~~s~~-~g~--~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~ 80 (109)
T cd01224 4 LQGEATRQKQN-KGW--NSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE 80 (109)
T ss_pred EeeeEEEEecc-cCC--cccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc
Confidence 56667776643 233 278999999999999886533222222222 2245544422 234555554
Q ss_pred ------cccCCCHHHHHHHHHHHHH
Q 004783 78 ------KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 78 ------~~~a~~~e~a~~W~~a~~~ 96 (730)
.+.|.|+|+-.+||+||+.
T Consensus 81 ~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 81 STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 8999999999999999975
No 97
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.33 E-value=4.6 Score=37.72 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 218 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~ 218 (730)
+....+|+|||+.||+++.|.+ ...+|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3456789999999999999999 79999963
No 98
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=92.85 E-value=0.76 Score=44.91 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=74.3
Q ss_pred ceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCC
Q 004783 186 PAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 265 (730)
Q Consensus 186 ~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dG 265 (730)
+.+.....|..+|+++|+++.|++ .+++.-+-+..++|+++ +++.-+--....- -.=|.--.-|... .++
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~~------k~i~e~F~Trv~~--~~~ 71 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLER-NERELIAELDVGF------KGIRETFTTRVTL--KPT 71 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEecc-CcceeEEEEEEEh------hheeeeeeeeeee--cCc
Confidence 356677889999999999999999 79999999999999986 4443222222100 0001111111111 122
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004783 266 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 322 (730)
Q Consensus 266 syvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~ 322 (730)
.-.|....++-| . +-+.|+|-++|+..+ .|+|...+..+.+.-+-.
T Consensus 72 ~~~I~~~l~~GP--------F--k~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 72 ARSIDMKLIDGP--------F--KYLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred hhhhhhhhhcCC--------h--hhhcCceEEEECCCC-ceEEEEEEEeeehhHHHH
Confidence 224554444322 1 135689999999654 899999999999887653
No 99
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=92.16 E-value=0.11 Score=62.86 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=56.1
Q ss_pred cccceeEEEeeeccccccccceeeEEEec--ceeeecccCCCCCCCCCceeEEee----------cceEEeccccc---e
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIID----------SCIRVTDNGRE---S 74 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~P~~~~ii~----------~~~~v~~~g~~---~ 74 (730)
..+||.||++|.-=. -|..|||||.. ..|+||+.-.+ .+|- |+|| |---|.+.|+= +
T Consensus 1634 r~~eG~LyKrGA~lK---~Wk~RwFVLd~~khqlrYYd~~ed---t~pk--G~IdLaevesv~~~~~k~vdekgffdlkt 1705 (1732)
T KOG1090|consen 1634 RIPEGYLYKRGAKLK---LWKPRWFVLDPDKHQLRYYDDFED---TKPK--GCIDLAEVESVALIGPKTVDEKGFFDLKT 1705 (1732)
T ss_pred cCcccchhhcchhhc---ccccceeEecCCccceeeeccccc---cccc--chhhhhhhhhhcccCccccCccceeeeeh
Confidence 338999999998422 36999999975 68999997765 4442 2222 11124444532 2
Q ss_pred ecc--cccCCCHHHHHHHHHHHHHHH
Q 004783 75 IHR--KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 75 ~h~--~~~a~~~e~a~~W~~a~~~a~ 98 (730)
-++ .|.|.|+-+|-+|++.|+.++
T Consensus 1706 t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 222 789999999999999999864
No 100
>PLN02866 phospholipase D
Probab=92.10 E-value=0.44 Score=59.09 Aligned_cols=87 Identities=20% Similarity=0.411 Sum_probs=62.8
Q ss_pred ccceeEEEe------e-ecccc------cc----ccceeeEEEecceeeecccCCCCCCCCCceeEEeec----------
Q 004783 11 RMEGWLHLI------R-SNRIG------LQ----YSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS---------- 63 (730)
Q Consensus 11 ~~eGwl~~~------g-~~~~g------~~----~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~---------- 63 (730)
-.||.+.++ | ..+.+ .+ -|+|||||||..+|.|.++ |.+ ..|+-.++.|-
T Consensus 183 ~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~-p~~--~~~~~v~lfD~~~~~~~~~~~ 259 (1068)
T PLN02866 183 LKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLED-PFD--AKPLDIIVFDVLPASNGNGEG 259 (1068)
T ss_pred cceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEec-CCC--CceeEEEEEecccccccCCCc
Confidence 389999988 2 22222 11 2578999999999999763 443 46899999993
Q ss_pred ceEEe---------ccccceecc----cccCCCHHHHHHHHHHHHHHHHh
Q 004783 64 CIRVT---------DNGRESIHR----KLGASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 64 ~~~v~---------~~g~~~~h~----~~~a~~~e~a~~W~~a~~~a~~~ 100 (730)
.+.+. .+|+++-.+ +|=|.|..+|..|+.|++.|...
T Consensus 260 ~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 260 QISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred ceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 32331 235665555 88999999999999999999753
No 101
>PF15408 PH_7: Pleckstrin homology domain
Probab=91.87 E-value=0.095 Score=46.68 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=50.0
Q ss_pred ceeEEEeeeccccccccceeeEEEecceeeecccCCCCC-CC---------CCceeEE-eecceEEeccccce--ecc--
Q 004783 13 EGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-NE---------DPVRSAI-IDSCIRVTDNGRES--IHR-- 77 (730)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~---------~P~~~~i-i~~~~~v~~~g~~~--~h~-- 77 (730)
||+||+.....| |+||.||.|+++-||..|+-.. .. .|+--+- ..+|+=+...|+=. ..|
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~ 75 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRH 75 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcch
Confidence 799999776544 8899999999999999887421 11 2222111 22232223333221 112
Q ss_pred -cccCCCHHHHHHHHHHHH
Q 004783 78 -KLGASSPEEAAKWIHSLQ 95 (730)
Q Consensus 78 -~~~a~~~e~a~~W~~a~~ 95 (730)
++=|.|.|-+.+|+.++.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred hhhhhhHHHHHHHHHHHhc
Confidence 777999999999999874
No 102
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=91.61 E-value=5 Score=36.83 Aligned_cols=137 Identities=9% Similarity=-0.007 Sum_probs=67.5
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 267 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsy 267 (730)
+....+|+||+++||++|.|.+ ....|.+......+-.. .+.+ ..+... . .......... +.... ..+..
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~-~Gg~-~~~~~~-~---~~g~~~~~~~--~i~~~-~~~~~ 71 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGPTTTAEMDLR-VGGR-WFFFMT-G---PDGEEGWVSG--EVLEV-EPPRR 71 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCcCCceEEccc-CCce-EEEEEE-C---CCCCEEeccE--EEEEE-cCCCe
Confidence 4556789999999999999998 68999875222222212 2222 222221 1 0111111111 11111 22222
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 347 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~~~~~~i~~~mL~~va~LRe~~~ 347 (730)
+.+.....+. |+ ... ....|.++|.++ .|+|++....-+.+- + ...+...+...+-..+.+||++++
T Consensus 72 -i~~~~~~~~~-~~---~~~---~~~~~~~~~~~~--~T~v~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 72 -LVFTWAFSDE-TP---GPE---TTVTVTLEETGG--GTRLTLTHSGFPEED-A--EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred -EEEEecccCC-CC---CCc---eEEEEEEEECCC--CEEEEEEEEccChHh-H--HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 2222222111 11 122 245788999973 599999887655431 1 011222232333345578888765
No 103
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.42 E-value=0.89 Score=42.55 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=54.9
Q ss_pred ccceeEEEeeeccc-cccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE--Eecc-----------c----c
Q 004783 11 RMEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTDN-----------G----R 72 (730)
Q Consensus 11 ~~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~~~-----------g----~ 72 (730)
.|||||-.-..++. +..=|.++|.||.+.-++.|....+..+.-|.- ++|..-. |..- - |
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~--vldl~~~fhv~~V~asDVi~a~~kDiP~IF 78 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSM--ILDIDKLFHVRPVTQGDVYRADAKEIPKIF 78 (112)
T ss_pred CcceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEE--EEEccceeeeecccHHHeeecCcccCCeEE
Confidence 48999987666444 223479999999999999999776543233443 4443211 1000 0 2
Q ss_pred ce-ecc-----cccCCCHHHHHHHHHHHHHHH
Q 004783 73 ES-IHR-----KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 73 ~~-~h~-----~~~a~~~e~a~~W~~a~~~a~ 98 (730)
+| .|+ -|=|.|.+|-.+|..||..-+
T Consensus 79 ~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 79 QILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 22 222 456789999999999987654
No 104
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.45 E-value=7 Score=36.72 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=64.9
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCce---EEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCc
Q 004783 190 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT---DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 266 (730)
Q Consensus 190 avgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~t---dIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGs 266 (730)
....|+||+++||+++.|++ ....|.+.+..++++..-++.. ..+..+++. .++. +.........+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~----~~~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH----FGIP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe----cCCc---eEEEEEEEEEcCCC
Confidence 45679999999999999999 7999999999999986433221 234444422 1221 22111111123344
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 318 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkG 318 (730)
+ +...++. |-++ .....+.++|.++ +|.||+.+..++.|
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCCc
Confidence 3 2333441 1111 1223667899765 59999999999743
No 105
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=90.16 E-value=14 Score=35.59 Aligned_cols=119 Identities=13% Similarity=-0.007 Sum_probs=75.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCc
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 266 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~-~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGs 266 (730)
+..+..|+||+++|++++.+... ....|-+.+..+++++-=++.-.|....+.+ .. ..+ .+.-|.... ++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-cccc
Confidence 56678899999999999999873 3577999999999886422334566666532 11 111 222233323 3445
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 004783 267 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 319 (730)
Q Consensus 267 yvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGw 319 (730)
..+.++-++-+. +. -.-..+.+.+.+.|.+++ +|.|+|.+..++.+-
T Consensus 76 ~~~~y~vveg~~-~~----~~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDV-LK----DGYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccc-cc----CceEEEEEEEEEEECCCC-CEEEEEEEEEEECCC
Confidence 666665554221 11 012345677889998554 899999999997653
No 106
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=89.14 E-value=8.4 Score=39.13 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=86.5
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 267 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dGsy 267 (730)
..-..+|++|+++|+++..|++ ..+.|++.+...+|++ ++- -++.. ..|.. -.|-....+..+..| -
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVld---dkr--SrW~~---~ap~g---~~v~Wea~it~d~~~-e 138 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVLD---DKR--SRWKA---NAPLG---LEVEWEAEITKDIPG-E 138 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeeccC---CCc--cceeE---cCCCC---ceEEEeehhhccCCC-c
Confidence 4445578999999999999999 7999999999988774 332 33333 12311 122222222222233 3
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-ccc-chhhHHHHHHHHHHHHHHH
Q 004783 268 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPS-SARSITIRMLGRVAALREL 345 (730)
Q Consensus 268 vI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~-~~~-~~~~i~~~mL~~va~LRe~ 345 (730)
+|...|++-..+ ++.|.|| +.+..+. +|.|...+.-.|-||.-.. .+. |...---++-.-+..+|++
T Consensus 139 ~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~ 207 (217)
T COG5637 139 RIQWESLPGARV-ENSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEY 207 (217)
T ss_pred EEeeecCCCCcC-CCCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 678888854333 5678888 6676654 6889888888887776532 222 3333333444667788888
Q ss_pred HHh
Q 004783 346 FRA 348 (730)
Q Consensus 346 ~~~ 348 (730)
+..
T Consensus 208 ~e~ 210 (217)
T COG5637 208 QEN 210 (217)
T ss_pred HHc
Confidence 875
No 107
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.13 E-value=0.4 Score=44.69 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=56.2
Q ss_pred ceeEEEe-eeccccccccceeeEEEecceeeecccCCCCCC--CCCceeEE-eecceEEec--------cccc-------
Q 004783 13 EGWLHLI-RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAI-IDSCIRVTD--------NGRE------- 73 (730)
Q Consensus 13 eGwl~~~-g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~--~~P~~~~i-i~~~~~v~~--------~g~~------- 73 (730)
=|||.-. ..+..+.+-++.||++|+|+-+..|+..|.+.. ..|..+.- +|--+||-. .++.
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 4888765 223455677899999999999999999998542 35554433 333333211 1222
Q ss_pred ---eecccccCCCHHHHHHHHHHHHH
Q 004783 74 ---SIHRKLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 74 ---~~h~~~~a~~~e~a~~W~~a~~~ 96 (730)
+.-+.|...+.+|.+.|.+||.+
T Consensus 82 g~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceeeEEEEecCHHHHHHHHHHHhc
Confidence 11127889999999999999974
No 108
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.77 E-value=2.5 Score=39.22 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=47.9
Q ss_pred cceeEEEeeeccccccccceeeEEEec--ceeeecccCCCC----CC--CCCceeEEeecceE-Ee-ccccc----e---
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHS----KN--EDPVRSAIIDSCIR-VT-DNGRE----S--- 74 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~----~~--~~P~~~~ii~~~~~-v~-~~g~~----~--- 74 (730)
++||||..-.+.+|-+ +.+.|+..++ +.+.|---.+.+ .+ .++.+.. |+.|++ -. +..|+ +
T Consensus 1 k~GYLy~~~k~~~~~~-Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~~~~~dRRFCFei~~~ 78 (104)
T cd01249 1 KEGYLYMQEKSKFGGS-WTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRKTESIDKRFCFDVEVE 78 (104)
T ss_pred CCceEEEEcCCCCCCe-EEEEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccccCCccceeeEeeeec
Confidence 6899999998888765 5566665444 243222222211 11 2333333 455555 22 22333 2
Q ss_pred -ecc--cccCCCHHHHHHHHHHHH
Q 004783 75 -IHR--KLGASSPEEAAKWIHSLQ 95 (730)
Q Consensus 75 -~h~--~~~a~~~e~a~~W~~a~~ 95 (730)
-++ .|=|.|..+-..||+|+.
T Consensus 79 ~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 79 EKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CCCCeEEEEecCHHHHHHHHHhhc
Confidence 122 788999999999999984
No 109
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=86.21 E-value=15 Score=36.12 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=63.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEE-EEEE-EcCCC
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWR-REDDG 265 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~l-R~wr-r~~dG 265 (730)
|.++-.|.+||++|++.|.|++ +--.++..++-++..++.. -...+++ . .+++ ..|--- +.-. .+...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~e~-~~~v~l~---i-g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGDEY-TAKVKLK---I-GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCCeE-EEEEEEe---e-ccee-EEEEEEEEEccccCCCc
Confidence 4556679999999999999987 3445667777787766633 3333432 1 3455 223221 1111 11223
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccc
Q 004783 266 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 325 (730)
Q Consensus 266 syvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~~~~ 325 (730)
+|.|-..-- |.-.--.......+.|-+. .|+|+|..+.|.+|-+-++..
T Consensus 73 ~~~i~g~G~---------~~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGs 121 (146)
T COG3427 73 SITINGSGG---------GAAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGS 121 (146)
T ss_pred EEEEEeecc---------cccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhH
Confidence 333332210 0000001112344556554 499999999999998765533
No 110
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=85.69 E-value=3.3 Score=37.90 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=52.0
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEec------cccceecc-------c
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD------NGRESIHR-------K 78 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~------~g~~~~h~-------~ 78 (730)
+||=+...+. .+.||+.|=.+.|=+=|+.++ .-=.|+-|.=.+.+|+| ++|.+.|. +
T Consensus 6 leg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~ 75 (97)
T cd01222 6 LEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQ 75 (97)
T ss_pred eeceEEeecC-------CCceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecCCCCCCcEEEEEecCCCceEEE
Confidence 5676664443 256998887777777676654 33344444333344433 34655433 7
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 004783 79 LGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 79 ~~a~~~e~a~~W~~a~~~a~~ 99 (730)
+-|.|+|+-..||++|+.|+.
T Consensus 76 l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 76 LTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred EEecCHHHHHHHHHHHHHHhh
Confidence 999999999999999999974
No 111
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=85.62 E-value=2.1 Score=39.66 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=53.2
Q ss_pred cccceeEEEeeeccccccccceeeEEEecc-eeeecccCCCCCCCCCceeEEeecceEEeccccceec--c-----cccC
Q 004783 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH-FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIH--R-----KLGA 81 (730)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~-~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~g~~~~h--~-----~~~a 81 (730)
+-++|-|.+.. |. |.++|.|+|... .|.|++.... +=-+.+.+..++.|+-...+.|+ - .|-.
T Consensus 13 Il~~g~v~K~k----gl-~~kkR~liLTd~PrL~Yvdp~~~----~~KGeI~~~~~l~v~~k~~~~F~I~tp~RtY~l~d 83 (104)
T PF14593_consen 13 ILKQGYVKKRK----GL-FAKKRQLILTDGPRLFYVDPKKM----VLKGEIPWSKELSVEVKSFKTFFIHTPKRTYYLED 83 (104)
T ss_dssp EEEEEEEEEEE----TT-EEEEEEEEEETTTEEEEEETTTT----EEEEEE--STT-EEEECSSSEEEEEETTEEEEEE-
T ss_pred EEEEEEEEEee----ce-EEEEEEEEEccCCEEEEEECCCC----eECcEEecCCceEEEEccCCEEEEECCCcEEEEEC
Confidence 44899999862 33 379999999988 8989875432 22245557788887776655433 2 3333
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 004783 82 SSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 82 ~~~e~a~~W~~a~~~a~~~ 100 (730)
....|.+|.+||+++..+
T Consensus 84 -~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 84 -PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp -TTS-HHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH
Confidence 455699999999998653
No 112
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=85.53 E-value=0.18 Score=53.34 Aligned_cols=138 Identities=10% Similarity=-0.054 Sum_probs=93.2
Q ss_pred CEEEEecCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEE
Q 004783 158 WTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHK 237 (730)
Q Consensus 158 W~lv~~~nGVrVy~r~~~~~~~~~~s~~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~ 237 (730)
|.+.+...-+.+..+..+. ..+...++..+..-........+.-.. .+..|+..-.-...++.+..++++...
T Consensus 27 ~s~~k~~~~v~~~~~a~~~------~~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~s 99 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK------PKGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWTS 99 (241)
T ss_pred HHHHhhcceeEEeccCCcC------cCCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeeeE
Confidence 5555555666666665442 233455555554443333333322222 233333333444566777788888877
Q ss_pred EEcCCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCC
Q 004783 238 QLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHG 303 (730)
Q Consensus 238 ~~~~~~lP~pvs~RDFV~lR~wrr~~dGsyvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g 303 (730)
.++. +.--.+++|+|+...+..+...+......++++++.+++...++|+..++.|++..|++..
T Consensus 100 ~~~~-~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~ 164 (241)
T KOG3845|consen 100 EFDS-FNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE 164 (241)
T ss_pred ecHh-hhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc
Confidence 7755 3345689999999999988877777778889999999999999999999999999999753
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=84.36 E-value=0.75 Score=54.54 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=63.5
Q ss_pred ccceeEEEe--eeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE-Ee---ccc------cceecc-
Q 004783 11 RMEGWLHLI--RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR-VT---DNG------RESIHR- 77 (730)
Q Consensus 11 ~~eGwl~~~--g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~-v~---~~g------~~~~h~- 77 (730)
-.||-|+++ |+-++|...+.||||-|-+.-|.|=|.+.. .|+.++-+. ||+ || |-. ++++|-
T Consensus 566 ~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~----q~~~~Ipl~-nI~avEklee~sF~~knv~qVV~~d 640 (800)
T KOG2059|consen 566 LKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK----QPIYTIPLS-NIRAVEKLEEKSFKMKNVFQVVHTD 640 (800)
T ss_pred ecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc----CcccceeHH-HHHHHHHhhhhccCCCceEEEEecC
Confidence 378888886 566788777899999999999999886654 666666553 444 44 322 445555
Q ss_pred ---cccCCCHHHHHHHHHHHHHHHH
Q 004783 78 ---KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 78 ---~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
.+-|.|--||..|..||+.+..
T Consensus 641 rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 641 RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred cceeEecCCchHHHHHHHHHHHHhc
Confidence 7889999999999999998855
No 114
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.03 E-value=4 Score=39.14 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=50.3
Q ss_pred cceeEEEeeecccc-----ccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE----Eec-------------
Q 004783 12 MEGWLHLIRSNRIG-----LQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR----VTD------------- 69 (730)
Q Consensus 12 ~eGwl~~~g~~~~g-----~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~----v~~------------- 69 (730)
+.|+|..+..++.. +.-.+.||++|=..+|=|=|+|..+. =.|+|-|.| |++
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~------f~V~dy~~r~~l~V~~~e~~~~~~~~~~~ 78 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGST------FVVFDYAPRSFLRVEKIEPDNQKIPLGSN 78 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCe------EEEEeeccccceEEeeccccccccccccc
Confidence 56888877665432 11246789999999998888886421 223333333 221
Q ss_pred -----ccccee-----cc-----cccCCCHHHHHHHHHHHH
Q 004783 70 -----NGRESI-----HR-----KLGASSPEEAAKWIHSLQ 95 (730)
Q Consensus 70 -----~g~~~~-----h~-----~~~a~~~e~a~~W~~a~~ 95 (730)
|-|.+. .| .|.|.|.+|.++||+||.
T Consensus 79 ~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 79 LVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 113321 23 899999999999999985
No 115
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.86 E-value=3.4 Score=39.14 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=45.4
Q ss_pred cceeeEEEecceeeecccCCCCC--CCCCceeEEeecceEEec--------------cccceecc------cccCCCHHH
Q 004783 29 SRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTD--------------NGRESIHR------KLGASSPEE 86 (730)
Q Consensus 29 ~~~Ryfvl~g~~l~~yk~~p~~~--~~~P~~~~ii~~~~~v~~--------------~g~~~~h~------~~~a~~~e~ 86 (730)
.+.||..|=.+.+=.=|+..... ++--.|..+.=...+|++ +|+.++|. +|.|.|.|+
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~ 99 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHL 99 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHH
Confidence 47899988888887778665421 111112111111111222 24555555 899999999
Q ss_pred HHHHHHHHHHHHHh
Q 004783 87 AAKWIHSLQEAALK 100 (730)
Q Consensus 87 a~~W~~a~~~a~~~ 100 (730)
-.+||+||+-|+..
T Consensus 100 K~kWm~al~~a~sn 113 (116)
T cd01223 100 RKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999764
No 116
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.18 E-value=3.4 Score=38.75 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=50.9
Q ss_pred cceeeEEEecceeeecccCCCC-----CCCCCceeEEeecc--eEEeccccceecc-----cccCCCHHHHHHHHHHHHH
Q 004783 29 SRKRYFLLEDHFLKSFKSVPHS-----KNEDPVRSAIIDSC--IRVTDNGRESIHR-----KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 29 ~~~Ryfvl~g~~l~~yk~~p~~-----~~~~P~~~~ii~~~--~~v~~~g~~~~h~-----~~~a~~~e~a~~W~~a~~~ 96 (730)
.+.|||||=.+.|-+....|.. .++-|+..+.|-.= +.-..+-|+|--. ..-|.|++|..+|+.-|+.
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~ 107 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNA 107 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999999999998853 35789988877531 2222344554211 6779999999999999876
No 117
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=79.06 E-value=2.7 Score=49.06 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=62.2
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCC-CCCceeEE-eecceEEeccccc-----eecc-----cc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-EDPVRSAI-IDSCIRVTDNGRE-----SIHR-----KL 79 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~-~~P~~~~i-i~~~~~v~~~g~~-----~~h~-----~~ 79 (730)
+||=++++-.+ -|- ...||++|=+..+-|-+.+-.-.. +.-+|..+ ++++...++.-.+ +.-| +|
T Consensus 274 KEG~l~Kis~k-~~~--~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G~~r~vel 350 (623)
T KOG4424|consen 274 KEGQLQKISAK-NGT--TQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNEELPHTFILTGKKRGVEL 350 (623)
T ss_pred hccceeeeecc-CCC--cceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccccCCceEEEecccceEEe
Confidence 99999999887 344 399999999988877664443221 33334333 7777776655332 2333 99
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 004783 80 GASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 80 ~a~~~e~a~~W~~a~~~a~~~ 100 (730)
+|.+.+|...|+.+|..||+.
T Consensus 351 ~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 351 QARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred ecCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999994
No 118
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=78.49 E-value=35 Score=33.06 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=29.0
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004783 185 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 217 (730)
Q Consensus 185 ~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~ 217 (730)
...+....+|+|||++|+++|.|.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 3678899999999999999999998 6899998
No 119
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=67.58 E-value=3.9 Score=46.88 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=54.5
Q ss_pred cceeEEEeeeccccccc---cceeeEEEecceeeecccCCCC-CC---CCCceeEEeecceEEeccccceecc---cccC
Q 004783 12 MEGWLHLIRSNRIGLQY---SRKRYFLLEDHFLKSFKSVPHS-KN---EDPVRSAIIDSCIRVTDNGRESIHR---KLGA 81 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~---~~~Ryfvl~g~~l~~yk~~p~~-~~---~~P~~~~ii~~~~~v~~~g~~~~h~---~~~a 81 (730)
.-||+-+.|.=+-=..| ++.|||||+.+.|.|||.+-.. .+ -.-+.+++|..+=--|-++.=.++- .|-|
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfDe~rfdIsvn~nv~~lra 99 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEFDECRFDISVNDNVWYLRA 99 (611)
T ss_pred cCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccchhheeeeEeccceeeehh
Confidence 56899777763322222 4699999999999999988763 21 2333344443332222222212222 6667
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 004783 82 SSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 82 ~~~e~a~~W~~a~~~a~~~ 100 (730)
...+.-..|+++|+.-..+
T Consensus 100 ~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 100 QDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred cCcHHHHHHHHHHHHHhhc
Confidence 7788888888888877654
No 120
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=58.72 E-value=14 Score=43.10 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=55.7
Q ss_pred cccccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCc-------------eeEE---------eecce
Q 004783 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-------------RSAI---------IDSCI 65 (730)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~-------------~~~i---------i~~~~ 65 (730)
++..|+|.||..+.-|.+ |.|=||||+.-=|+|+-|-.. ++|- =++| .|-|.
T Consensus 315 ~~pei~GfL~~K~dgkKs---WKk~yf~LR~SGLYys~K~ts---k~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f 388 (622)
T KOG3751|consen 315 SPPEIQGFLYLKEDGKKS---WKKHYFVLRRSGLYYSTKGTS---KEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGF 388 (622)
T ss_pred CCccccceeeeccccccc---ceeEEEEEecCcceEccCCCC---CCchhhHHHHhcccCceEEeecchhccCCCCCceE
Confidence 455699999999876555 599999999999988765443 2221 1111 11122
Q ss_pred EEeccccceecc---cccCCCHHHHHHHHHHHHHHH
Q 004783 66 RVTDNGRESIHR---KLGASSPEEAAKWIHSLQEAA 98 (730)
Q Consensus 66 ~v~~~g~~~~h~---~~~a~~~e~a~~W~~a~~~a~ 98 (730)
-+.-+|.+.-|. .|.|.+...-..|+-||+-++
T Consensus 389 ~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 389 CIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred EeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 222222222212 789999999999999999885
No 121
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=52.90 E-value=12 Score=45.81 Aligned_cols=72 Identities=31% Similarity=0.386 Sum_probs=53.6
Q ss_pred ccccceeeEEEecceeeecccCCCCC--CCCCceeEEeecceE-----Eeccc----cceecccccCCCHHHHHHHHHHH
Q 004783 26 LQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIR-----VTDNG----RESIHRKLGASSPEEAAKWIHSL 94 (730)
Q Consensus 26 ~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~P~~~~ii~~~~~-----v~~~g----~~~~h~~~~a~~~e~a~~W~~a~ 94 (730)
-.+++.|||||.|..|+-||.+-..+ .+=||.+.++=-.++ =+--| .|.||--+.|.++-+.-.||-.+
T Consensus 1048 g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~GvkkklKpPt~wg~T~i~ekhh~~l~cd~s~~~~ewfts~ 1127 (1186)
T KOG1117|consen 1048 GNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVKKKLKPPTSWGFTAISEKHHWYLCCDSSSEQTEWFTSI 1127 (1186)
T ss_pred CCccceEEEEecCcEEEEeehhhccccccccccccceEEeccccccCCCCccceeeeeecceEEEecCCccccchhhhhh
Confidence 34779999999999999999887653 277888877432222 11112 34567799999999999999988
Q ss_pred HHH
Q 004783 95 QEA 97 (730)
Q Consensus 95 ~~a 97 (730)
=.|
T Consensus 1128 fka 1130 (1186)
T KOG1117|consen 1128 FKA 1130 (1186)
T ss_pred hhh
Confidence 776
No 122
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=51.37 E-value=10 Score=46.39 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=52.7
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCC----CCCCceeEEeec---ceEEe-ccccceecccccCCC
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK----NEDPVRSAIIDS---CIRVT-DNGRESIHRKLGASS 83 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~----~~~P~~~~ii~~---~~~v~-~~g~~~~h~~~~a~~ 83 (730)
.+||||+-..-..|. ++|||+|.+-+|.||+....++ +...+....|+. +-+.. +.|-+++|.+ +.+
T Consensus 79 ~~g~l~k~~n~~~~~---~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~q~~~~~--~~~ 153 (799)
T KOG1737|consen 79 LEGILLKWRNYSKGP---SSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMDICSVDGSCQIYLVE--LSK 153 (799)
T ss_pred ccceeeccccccCCc---ccceEEecCcceeeeccCCccccCCCCcccccccccccCCCcccchhhcccchhhhh--hhH
Confidence 789999965544444 8999999999999998766543 133343343332 22222 2333445555 556
Q ss_pred HHHHHHHHHHHHHHH
Q 004783 84 PEEAAKWIHSLQEAA 98 (730)
Q Consensus 84 ~e~a~~W~~a~~~a~ 98 (730)
..+-.+|..+++.|-
T Consensus 154 ~~~~~~~~~~~~l~~ 168 (799)
T KOG1737|consen 154 KLQRQGWLHALELAP 168 (799)
T ss_pred HHhhcchhhhhhhcc
Confidence 677788999998883
No 123
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=47.21 E-value=5.6 Score=47.02 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=36.1
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecccCCC
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH 49 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~ 49 (730)
+.+||+++.+-|..+.++|++=||||++..|.-|..+-+
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~ 601 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRV 601 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhh
Confidence 478999999999999999999999999999999987665
No 124
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=43.46 E-value=2.5e+02 Score=25.40 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 218 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~ 218 (730)
+....+|+|||+.|++++.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4556789999999999999998 68999765
No 125
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=42.70 E-value=4.2e+02 Score=27.73 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=80.6
Q ss_pred CceEEEEEEecC--cHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEcCCCCCCCCCCceEEEE-EEEEE
Q 004783 185 HPAIMAVGVVDG--TSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRR 261 (730)
Q Consensus 185 ~~~~KavgvVdA--spe~VfevL~d~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~lP~pvs~RDFV~l-R~wrr 261 (730)
..+-|..-.|.- .-.+|...|+|++ .-...|..+..++++...+++.-++.++++. +..+.+-+.+. ..-..
T Consensus 58 tdI~K~~~~I~~pnkYneIIN~LWdpn-~~~~fn~~~ikgki~RvYnpNLvmiqqry~~----~~~~~~~YfyaLa~Kv~ 132 (208)
T TIGR01599 58 TIIGKIHLTIQDPNKYDAIIKTLWDFN-DNKKFGRKFIKGKVVRVYSPNLIMIQQRYKD----ASGSPNKYFYALATKVK 132 (208)
T ss_pred cEEEEEEEEecCchhHHHHHHHHhccc-cccCCCchheeeeEEEEeCCCeEEEEeecCC----CCCCcceEEeEeeeeee
Confidence 356677777744 3589999999999 6788999999999999999999999999864 23333444433 22222
Q ss_pred cCCCcEEEEEEecCCCCC-CCC-CC--------------------------eEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004783 262 EDDGTYVILYHSVFHKKC-PRQ-KG--------------------------SVRACLKSGGYVITPMNHGKKSVVKHM 311 (730)
Q Consensus 262 ~~dGsyvI~~~SV~Hp~~-Pp~-~G--------------------------~VRa~i~~gGwvI~Pl~~g~~t~VTyi 311 (730)
....+.+|++.|..-.+. |.. +. .-...+..+||+|+.-.+ ...|||+
T Consensus 133 iSed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 133 VSEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred cCCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 345667778888663222 111 11 233456778999988653 4667774
No 126
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=39.97 E-value=16 Score=34.38 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=52.9
Q ss_pred ccccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCC----CCCce------eEEe-ecceEEecc-ccceec
Q 004783 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN----EDPVR------SAII-DSCIRVTDN-GRESIH 76 (730)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~----~~P~~------~~ii-~~~~~v~~~-g~~~~h 76 (730)
.+.++|.++++|-- + .+-|++|||=|=.|.|..|-......+ ++-|. +.|= +-|+.+.=+ |.+.
T Consensus 2 DcIvhGyi~KLGGP-F-ls~WQ~Ry~~LfPNRLE~~~~~~~~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~-- 77 (116)
T cd01240 2 DCIVHGYIKKLGGP-F-LSQWQTRYFKLYPNRLELYGESEANKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKKI-- 77 (116)
T ss_pred ceEEeeehhhhCCH-H-HHHHHHHHheeCcceeeecccccccCCcEEEeehhhhcchhheeeccCceEEEEEcCCceE--
Confidence 34588999987753 2 223899999999999999744333211 12222 2222 223322221 2222
Q ss_pred ccccCCCHHHHHHHHHHHHHHHH
Q 004783 77 RKLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 77 ~~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
.|-+.+--+-.+|++.+..|-.
T Consensus 78 -vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 78 -VLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred -EEecCCcHHHHHHHHHHHHHHH
Confidence 5668888899999999998854
No 127
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.64 E-value=3.2e+02 Score=25.72 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=63.2
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE--EeecCceEEEEEEEcCCCCCCCCCCceEEEEEEEEEcCCC
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV--EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 265 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~~e~~VV--E~iD~~tdIvY~~~~~~~lP~pvs~RDFV~lR~wrr~~dG 265 (730)
||....+++|++++|+.|.+. ..-|-.-...+.+ .+|.| .-|... ++++--+-+....-..+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s----~~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDS----LLYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHH----HHHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 567778999999999999852 2222222222222 23322 234432 122224444333333456
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004783 266 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 322 (730)
Q Consensus 266 syvI~~~SV~Hp~~Pp~~G~VRa~i~~gGwvI~Pl~~g~~t~VTyi~qvDpkGwip~ 322 (730)
.|.+.+.|-. | ...-.|.|+|++++ .|.|+|-=.....++...
T Consensus 66 ~Y~~~~~s~~--------~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~~ 108 (120)
T PF11687_consen 66 RYAATFSSSR--------G-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQK 108 (120)
T ss_pred EEEEEEEecC--------C-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHHH
Confidence 6777766652 2 22458999999877 799999999998887653
No 128
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=33.64 E-value=54 Score=38.95 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=63.4
Q ss_pred cccccccceeEEEeeeccccccccceeeEEEe--cceeee--cccCCCCCCCCCceeEEeecceEEeccc------c--c
Q 004783 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKS--FKSVPHSKNEDPVRSAIIDSCIRVTDNG------R--E 73 (730)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~--g~~l~~--yk~~p~~~~~~P~~~~ii~~~~~v~~~g------~--~ 73 (730)
..++..+||+||.-...+||.+ |-|-|.+-. -+.+.| +..++..+ +-|.-+.++-.|.|=.-.. | +
T Consensus 261 ~p~p~t~eGYlY~QEK~~~g~s-WvKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~RRktdSIdKRFCFDve 338 (812)
T KOG1451|consen 261 RPTPSTKEGYLYMQEKSKIGKS-WVKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSRRKTDSIDKRFCFDVE 338 (812)
T ss_pred CCCCcccceeeeehhhhhccch-hhhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhccCcccccccceeeeee
Confidence 4567779999999999999997 577777753 455555 23333333 5688889999999811111 1 1
Q ss_pred eec--c--cccCCCHHHHHHHHHHHHHH
Q 004783 74 SIH--R--KLGASSPEEAAKWIHSLQEA 97 (730)
Q Consensus 74 ~~h--~--~~~a~~~e~a~~W~~a~~~a 97 (730)
+.. | +|-|-|.++-.-||+|..-|
T Consensus 339 ~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 339 VEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred ecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 111 2 88999999999999998776
No 129
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.51 E-value=4.1e+02 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=23.7
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004783 189 MAVGVVDGTSEAIFQTLMSLGASRSVWDF 217 (730)
Q Consensus 189 KavgvVdAspe~VfevL~d~d~~R~eWD~ 217 (730)
.....|+||++.||+++.|.+ ...+|-.
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~-~~~~W~~ 30 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPD-ALAKWLP 30 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHH-HHhhcCC
Confidence 445679999999999999988 6889864
No 130
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=32.86 E-value=37 Score=41.90 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=62.4
Q ss_pred ccccccceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEE--eecceE-Eeccccceecc------
Q 004783 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAI--IDSCIR-VTDNGRESIHR------ 77 (730)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~i--i~~~~~-v~~~g~~~~h~------ 77 (730)
..+....|||-++|- -.|=|-+|-|+.+..||..++ -|++.+| |+-..- |.+-.|+.|.-
T Consensus 189 p~pP~raG~lelrg~-------kak~f~~vsp~~vqL~knlq~----f~lgigit~I~m~~~nvk~vdr~sfdl~Tp~r~ 257 (1186)
T KOG1117|consen 189 PVPPPRAGWLELRGF-------KAKLFVAVSPERVQLYKNLQS----FPLGIGITFIYMEVSNVKEVDRRSFDLNTPYRE 257 (1186)
T ss_pred CCCCCCccchhcccc-------ccceeEEecCceeeeeccccc----ccCCceeEEEecccccccccccceeccCCceee
Confidence 344569999999764 388899999999999998886 6677776 553322 44444455444
Q ss_pred -cccCCCHHHHHHHHHHHHHHHHh
Q 004783 78 -KLGASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 78 -~~~a~~~e~a~~W~~a~~~a~~~ 100 (730)
-|-|.+--+-..|.+|.+.|+..
T Consensus 258 fsftaese~erq~w~ea~q~siAe 281 (1186)
T KOG1117|consen 258 FSFTAESETERQIWGEAPQPSIAE 281 (1186)
T ss_pred eeeeeccchhhhhhhhccCccccc
Confidence 67799999999999999988753
No 131
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=32.24 E-value=4e+02 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.3
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004783 185 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 217 (730)
Q Consensus 185 ~~~~KavgvVdAspe~VfevL~d~d~~R~eWD~ 217 (730)
...++.+.+|++||+.||+.+.+.+ .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4689999999999999999999998 7999987
No 132
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.08 E-value=43 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccccc
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCF 219 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD~~~ 219 (730)
++...+|+|||++||+++.+.+ ...+|.+..
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5667889999999999999998 688998753
No 133
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=30.84 E-value=20 Score=42.52 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=57.8
Q ss_pred cceeEEEeeeccccccccceeeEEEeccee-----eecccCCCCCCCCCceeEEeecceE-Ee--ccc----cceecc--
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFL-----KSFKSVPHSKNEDPVRSAIIDSCIR-VT--DNG----RESIHR-- 77 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l-----~~yk~~p~~~~~~P~~~~ii~~~~~-v~--~~g----~~~~h~-- 77 (730)
+.|++|-+|+|---+ |.||||||----- -.|..|. .+|-.-+-+||.++ -+ ..| +--|+.
T Consensus 466 hsgylyaig~nvwkr--wkkrffvlvqvsqytfamcsyrekk----aepqel~qldgytvdytdp~pglqgg~~ffnavk 539 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWKR--WKKRFFVLVQVSQYTFAMCSYREKK----AEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVK 539 (1218)
T ss_pred cceeehhhhhHHHHH--hHhhEEEEEEhhhhhhHhhhhhhcc----cChHHHhhccCeeeccCCCCCccccchHHHHHhc
Confidence 889999999986665 7999999964221 1344443 35666667899988 12 223 222332
Q ss_pred -----cccCCCHHHHHHHHHHHHHHHH
Q 004783 78 -----KLGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 78 -----~~~a~~~e~a~~W~~a~~~a~~ 99 (730)
++|..+.++---|..|+-.|--
T Consensus 540 egdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 540 EGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred cCceEEeccCchhhhhHHHHHHHHhhC
Confidence 8999999999999999999854
No 134
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=29.33 E-value=44 Score=40.28 Aligned_cols=84 Identities=17% Similarity=0.351 Sum_probs=55.5
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceEEeccccceecc--------cccCCC
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHR--------KLGASS 83 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~v~~~g~~~~h~--------~~~a~~ 83 (730)
..|.+-..+ .++|+ ..+||||+|.-...||+.+...- +.|-...=+-.-|..+.-|--+.-+ .+-+.+
T Consensus 251 kSgy~~~~~-s~~k~--lkrr~~v~k~gqi~~y~~~~~~~-~~p~s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s 326 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIKS--LKRRYVVFKNGQISFYRKHNNRD-EEPASKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTES 326 (936)
T ss_pred cccchhcch-HHHHH--HHhHheeeccceEEEEEcCCCcc-ccccCcccccccceeeccchhHHhhhhhhceeEEEeccC
Confidence 567777777 55776 69999999999999999877632 4444333233333333322111111 677889
Q ss_pred HHHHHHHHHHHHHHHH
Q 004783 84 PEEAAKWIHSLQEAAL 99 (730)
Q Consensus 84 ~e~a~~W~~a~~~a~~ 99 (730)
..-.+.|+.-|+.++.
T Consensus 327 ~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 327 ERTTHDWVTILSAAIK 342 (936)
T ss_pred hhhhhhhHHHHHHHHH
Confidence 9999999999998876
No 135
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.05 E-value=76 Score=29.31 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=43.9
Q ss_pred eeEEEeeeccccccccceeeEEE--ecceeeecccCCCCCCC------CCceeEEeecc--------e--EEecccccee
Q 004783 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHSKNE------DPVRSAIIDSC--------I--RVTDNGRESI 75 (730)
Q Consensus 14 Gwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~yk~~p~~~~~------~P~~~~ii~~~--------~--~v~~~g~~~~ 75 (730)
-.|.++..+ +. ...|+|-| ++..|.+...++..... .=||.|---.+ . -.+++.+=|+
T Consensus 10 ~~~~K~~~~--~~--~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIi 85 (115)
T cd01248 10 SVFIKWDDT--SR--ERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIV 85 (115)
T ss_pred CEEEEEcCC--Cc--eeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEE
Confidence 355665551 12 35688888 57788776544311111 11122210000 0 1344445556
Q ss_pred cc--------cccCCCHHHHHHHHHHHHH
Q 004783 76 HR--------KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 76 h~--------~~~a~~~e~a~~W~~a~~~ 96 (730)
|| .|-|.|.++|..|+..|..
T Consensus 86 y~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 86 YGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 66 7889999999999998863
No 136
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=27.79 E-value=1e+02 Score=29.77 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=17.6
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 004783 78 KLGASSPEEAAKWIHSLQE 96 (730)
Q Consensus 78 ~~~a~~~e~a~~W~~a~~~ 96 (730)
..|..+...+++||+-|++
T Consensus 93 ~tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 93 MTGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred eccCCCHHHHHHHHHHHHh
Confidence 7788999999999999987
No 137
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.66 E-value=1.3e+02 Score=27.35 Aligned_cols=68 Identities=22% Similarity=0.397 Sum_probs=38.0
Q ss_pred ccccccceeeEEEe-cceeeecccCCCC-CCCCCceeEEeecceEEeccccce--ecc-----cccCCCHHHHHHHHHHH
Q 004783 24 IGLQYSRKRYFLLE-DHFLKSFKSVPHS-KNEDPVRSAIIDSCIRVTDNGRES--IHR-----KLGASSPEEAAKWIHSL 94 (730)
Q Consensus 24 ~g~~~~~~Ryfvl~-g~~l~~yk~~p~~-~~~~P~~~~ii~~~~~v~~~g~~~--~h~-----~~~a~~~e~a~~W~~a~ 94 (730)
.|+ |.++|=|+|- +-.|.|+.-.-.. +++.|+-+ -+++|+---.+. +|- .| ..-...|.+|.+++
T Consensus 11 ~gl-f~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~----~~l~v~~~~~~~F~I~Tp~rty~l-eD~~~~a~~W~~~I 84 (89)
T cd01262 11 KGL-FAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSD----VELRVEVKNSSHFFVHTPNKVYSF-EDPKGRASQWKKAI 84 (89)
T ss_pred hcc-ccceeeEEEecCceEEEEcCCcCeEEeEecccc----cceEEEEecCccEEEECCCceEEE-ECCCCCHHHHHHHH
Confidence 455 6799999885 4566776533211 22444443 155555432222 222 23 12236789999999
Q ss_pred HHH
Q 004783 95 QEA 97 (730)
Q Consensus 95 ~~a 97 (730)
+.+
T Consensus 85 ~~~ 87 (89)
T cd01262 85 EDL 87 (89)
T ss_pred HHH
Confidence 987
No 138
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=23.07 E-value=6.2e+02 Score=23.56 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccc
Q 004783 188 IMAVGVVDGTSEAIFQTLMSLGASRSVWD 216 (730)
Q Consensus 188 ~KavgvVdAspe~VfevL~d~d~~R~eWD 216 (730)
+...-.|+||++.||+.+.+.+ ...+|-
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~-~l~~W~ 29 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPE-HLAQWW 29 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHH-HHhhcc
Confidence 4456679999999999999988 688885
No 139
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=23.06 E-value=48 Score=41.07 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=57.9
Q ss_pred cceeEEEeeeccccccccceeeEEEecceeeecccCCCCCCCCCceeEEeecceE--Eecc-----ccceecc----ccc
Q 004783 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTDN-----GRESIHR----KLG 80 (730)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P~~~~ii~~~~~--v~~~-----g~~~~h~----~~~ 80 (730)
++|-+|. +.......+.+|||-++++.+-|++|--+... .-..-++.|.. +.+. =|+++-+ .|=
T Consensus 276 ~~~~l~~--k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~---~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQ 350 (785)
T KOG0521|consen 276 MEGYLRK--KASNASKTWKRRWFSIQDGQLGYQHRGADAEN---VLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQ 350 (785)
T ss_pred hhhhhhh--hcccchhhHHhhhhhhhccccccccccccccc---cccccchhccccCCcccccceeeEEEecCCcceEEe
Confidence 4555554 43346777899999999999999998877431 11111344444 2221 2666555 888
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 004783 81 ASSPEEAAKWIHSLQEAALK 100 (730)
Q Consensus 81 a~~~e~a~~W~~a~~~a~~~ 100 (730)
|.|..+=..||.+++..+.+
T Consensus 351 Aes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 351 AESEKDCQDWISALQNSILS 370 (785)
T ss_pred cCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999885
No 140
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=22.68 E-value=5.4e+02 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=18.4
Q ss_pred cCcHHHHHHHHHhCCCCcccc
Q 004783 195 DGTSEAIFQTLMSLGASRSVW 215 (730)
Q Consensus 195 dAspe~VfevL~d~d~~R~eW 215 (730)
+||++.||+++.+.+ ...+|
T Consensus 1 ~ap~e~Vw~a~t~~~-~~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTDPE-GLAQW 20 (124)
T ss_dssp SSSHHHHHHHHHSHH-HHHHH
T ss_pred CcCHHHHHHHHCCHh-HHhhc
Confidence 689999999999988 68999
No 141
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.24 E-value=83 Score=29.17 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=48.7
Q ss_pred ccceeEEEeeeccccccccceeeEEEecceeeecc-cCCCC--CCCCCceeEEeecceEEe-----ccccceecc----c
Q 004783 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFK-SVPHS--KNEDPVRSAIIDSCIRVT-----DNGRESIHR----K 78 (730)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk-~~p~~--~~~~P~~~~ii~~~~~v~-----~~g~~~~h~----~ 78 (730)
.++|=|+-+..+..-. =++-++|.+...+|--.- .+... ....|+..+-+.- +. -|++++... .
T Consensus 3 i~~G~l~e~~~~~~kp-~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~n---i~D~~~~kNafki~t~~~s~i 78 (100)
T cd01226 3 ILYGELEEFDVETKKP-VQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVN---VKDRENAKKVLKLLIFPESRI 78 (100)
T ss_pred EEcCcEEEechhhCCc-cceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEe---cCCCcCcCceEEEEeCCccEE
Confidence 3556566555543222 234447877777765422 11111 1134444433210 22 346776554 7
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 004783 79 LGASSPEEAAKWIHSLQEAAL 99 (730)
Q Consensus 79 ~~a~~~e~a~~W~~a~~~a~~ 99 (730)
+.|.|+++-..||..|++|+.
T Consensus 79 ~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 79 YQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred EEeCCHHHHHHHHHHHHHHhc
Confidence 889999999999999999963
No 142
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=21.68 E-value=76 Score=35.51 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=38.6
Q ss_pred cccccccceeEEEeeeccccccccceeeEEEecceeeecccCCC
Q 004783 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH 49 (730)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~ 49 (730)
....+.|-||+.-.--|.+.-+-.+.||+.|+|..+.-|...|.
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv 320 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPV 320 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCc
Confidence 34566799999998888899888899999999999999998885
Done!