Query 004785
Match_columns 730
No_of_seqs 517 out of 3463
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 12:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0303 Actin-binding protein 100.0 2E-28 4.2E-33 258.9 19.9 308 29-398 5-322 (472)
2 KOG0272 U4/U6 small nuclear ri 99.9 1.6E-26 3.5E-31 246.3 18.1 205 47-255 183-407 (459)
3 PTZ00421 coronin; Provisional 99.9 5.7E-23 1.2E-27 233.8 34.5 271 32-339 3-292 (493)
4 KOG0272 U4/U6 small nuclear ri 99.9 6.3E-25 1.4E-29 234.1 17.2 239 75-320 181-447 (459)
5 KOG0263 Transcription initiati 99.9 2.4E-24 5.3E-29 243.8 20.4 198 52-260 441-649 (707)
6 KOG0271 Notchless-like WD40 re 99.9 2.3E-23 5E-28 219.8 22.2 239 72-320 160-468 (480)
7 KOG0279 G protein beta subunit 99.9 8.5E-23 1.8E-27 208.9 25.5 239 79-321 26-301 (315)
8 KOG0263 Transcription initiati 99.9 2.3E-23 4.9E-28 236.0 19.6 222 71-322 380-638 (707)
9 PTZ00420 coronin; Provisional 99.9 1.2E-21 2.5E-26 225.1 32.9 211 33-255 5-234 (568)
10 KOG0271 Notchless-like WD40 re 99.9 3.8E-22 8.3E-27 210.7 21.8 169 72-244 118-297 (480)
11 KOG0279 G protein beta subunit 99.9 4.8E-22 1.1E-26 203.4 21.3 188 77-268 71-270 (315)
12 KOG0266 WD40 repeat-containing 99.9 2.4E-21 5.2E-26 219.2 29.1 197 75-273 165-377 (456)
13 KOG0286 G-protein beta subunit 99.9 3.8E-21 8.1E-26 197.9 25.5 221 77-307 105-342 (343)
14 KOG0284 Polyadenylation factor 99.9 2E-21 4.4E-26 206.7 18.6 221 72-320 141-367 (464)
15 KOG0291 WD40-repeat-containing 99.9 2.2E-20 4.9E-25 210.2 25.5 236 78-360 316-560 (893)
16 KOG0315 G-protein beta subunit 99.9 2.7E-20 5.9E-25 188.1 21.9 235 80-320 9-275 (311)
17 KOG0273 Beta-transducin family 99.9 3.5E-20 7.7E-25 200.1 23.8 211 79-320 245-510 (524)
18 KOG0286 G-protein beta subunit 99.9 2.1E-20 4.6E-25 192.4 20.3 166 81-250 156-330 (343)
19 KOG0310 Conserved WD40 repeat- 99.9 5.7E-20 1.2E-24 199.4 23.8 220 77-325 76-301 (487)
20 KOG0265 U5 snRNP-specific prot 99.9 4.9E-20 1.1E-24 190.2 21.5 195 78-275 56-262 (338)
21 KOG0285 Pleiotropic regulator 99.8 6E-20 1.3E-24 192.8 21.1 183 73-260 155-343 (460)
22 cd00200 WD40 WD40 domain, foun 99.8 1.5E-18 3.2E-23 173.9 29.9 182 78-263 18-210 (289)
23 KOG0266 WD40 repeat-containing 99.8 9.9E-20 2.1E-24 206.1 23.7 177 75-255 209-399 (456)
24 KOG0295 WD40 repeat-containing 99.8 5E-20 1.1E-24 194.0 16.2 194 77-274 158-378 (406)
25 KOG0292 Vesicle coat complex C 99.8 4.1E-19 8.9E-24 202.3 24.5 343 75-423 57-479 (1202)
26 KOG0315 G-protein beta subunit 99.8 3.3E-19 7.1E-24 180.3 20.6 194 75-276 46-301 (311)
27 KOG0291 WD40-repeat-containing 99.8 7.1E-19 1.5E-23 198.2 24.7 235 72-322 353-601 (893)
28 KOG0295 WD40 repeat-containing 99.8 2.6E-19 5.5E-24 188.7 19.4 174 78-255 202-395 (406)
29 KOG0273 Beta-transducin family 99.8 5.1E-19 1.1E-23 191.2 21.2 173 79-255 286-513 (524)
30 PTZ00421 coronin; Provisional 99.8 7.7E-18 1.7E-22 191.9 31.7 173 80-255 87-279 (493)
31 KOG0283 WD40 repeat-containing 99.8 4.3E-19 9.4E-24 202.9 21.3 231 74-337 272-576 (712)
32 KOG0277 Peroxisomal targeting 99.8 3.4E-19 7.5E-24 180.6 16.2 187 76-264 68-269 (311)
33 PLN00181 protein SPA1-RELATED; 99.8 2.1E-17 4.5E-22 199.0 33.4 178 75-255 489-680 (793)
34 KOG0284 Polyadenylation factor 99.8 8.1E-20 1.8E-24 194.6 10.1 172 79-255 106-284 (464)
35 KOG0292 Vesicle coat complex C 99.8 1.6E-18 3.5E-23 197.5 21.0 248 80-335 20-321 (1202)
36 KOG0276 Vesicle coat complex C 99.8 1.9E-18 4.1E-23 191.5 20.6 180 80-262 66-254 (794)
37 KOG0319 WD40-repeat-containing 99.8 1.5E-18 3.2E-23 195.6 18.4 173 79-255 422-609 (775)
38 KOG0645 WD40 repeat protein [G 99.8 1.7E-17 3.6E-22 169.7 24.2 174 81-255 27-215 (312)
39 KOG0281 Beta-TrCP (transducin 99.8 5.3E-19 1.2E-23 185.0 12.9 205 77-293 203-433 (499)
40 KOG0282 mRNA splicing factor [ 99.8 6.2E-19 1.3E-23 191.2 13.8 215 102-320 209-449 (503)
41 cd00200 WD40 WD40 domain, foun 99.8 2.5E-17 5.4E-22 165.0 24.2 172 80-255 104-281 (289)
42 KOG0285 Pleiotropic regulator 99.8 8E-18 1.7E-22 177.0 21.1 183 76-263 200-392 (460)
43 PLN00181 protein SPA1-RELATED; 99.8 7.3E-17 1.6E-21 194.2 31.9 174 80-255 544-728 (793)
44 KOG0282 mRNA splicing factor [ 99.8 8.2E-19 1.8E-23 190.3 12.6 144 79-223 225-375 (503)
45 KOG0772 Uncharacterized conser 99.8 8.8E-18 1.9E-22 183.1 20.6 181 75-255 173-384 (641)
46 KOG0645 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 166.9 23.6 206 102-333 9-223 (312)
47 KOG0318 WD40 repeat stress pro 99.8 9.5E-17 2.1E-21 175.6 26.2 174 79-254 200-506 (603)
48 KOG0313 Microtubule binding pr 99.8 2.5E-17 5.4E-22 174.5 21.0 181 81-263 159-379 (423)
49 KOG0319 WD40-repeat-containing 99.8 1E-17 2.2E-22 189.0 18.7 193 78-274 374-591 (775)
50 KOG1446 Histone H3 (Lys4) meth 99.8 2.3E-16 5.1E-21 164.4 27.3 179 74-255 19-207 (311)
51 KOG0973 Histone transcription 99.8 4E-17 8.7E-22 190.8 23.7 179 75-254 19-238 (942)
52 KOG0316 Conserved WD40 repeat- 99.7 4.3E-17 9.4E-22 163.9 18.2 169 79-255 27-203 (307)
53 KOG0275 Conserved WD40 repeat- 99.7 1.4E-17 3.1E-22 173.0 14.9 176 77-254 221-411 (508)
54 KOG0264 Nucleosome remodeling 99.7 1.8E-17 3.8E-22 179.1 16.2 182 74-255 183-393 (422)
55 KOG0283 WD40 repeat-containing 99.7 7.4E-18 1.6E-22 192.8 13.3 147 102-254 261-470 (712)
56 KOG0274 Cdc4 and related F-box 99.7 4.7E-16 1E-20 178.4 28.0 210 81-299 218-452 (537)
57 KOG0305 Anaphase promoting com 99.7 1.4E-16 3E-21 178.1 22.9 217 78-325 226-453 (484)
58 KOG0281 Beta-TrCP (transducin 99.7 8.5E-18 1.8E-22 176.1 11.9 221 30-264 192-432 (499)
59 PTZ00420 coronin; Provisional 99.7 3.8E-16 8.3E-21 179.9 24.8 174 80-255 86-283 (568)
60 KOG0305 Anaphase promoting com 99.7 1.2E-16 2.7E-21 178.5 19.9 178 80-260 269-456 (484)
61 KOG0318 WD40 repeat stress pro 99.7 1E-15 2.2E-20 167.7 24.5 169 82-254 161-381 (603)
62 KOG0639 Transducin-like enhanc 99.7 8.3E-17 1.8E-21 174.8 15.9 213 77-321 473-692 (705)
63 KOG0640 mRNA cleavage stimulat 99.7 1.1E-16 2.5E-21 165.8 15.8 155 101-256 106-282 (430)
64 KOG0640 mRNA cleavage stimulat 99.7 3.6E-16 7.8E-21 162.2 19.0 224 69-296 112-391 (430)
65 KOG0289 mRNA splicing factor [ 99.7 6.1E-16 1.3E-20 166.2 21.2 180 80-263 230-422 (506)
66 KOG0296 Angio-associated migra 99.7 2.5E-15 5.5E-20 158.9 25.3 242 80-325 75-390 (399)
67 KOG0276 Vesicle coat complex C 99.7 2.1E-16 4.5E-21 175.5 17.3 176 75-254 103-288 (794)
68 KOG0269 WD40 repeat-containing 99.7 6.7E-17 1.4E-21 183.1 13.7 185 79-265 98-301 (839)
69 KOG0294 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 159.2 20.8 173 77-255 49-227 (362)
70 KOG1445 Tumor-specific antigen 99.7 2.4E-16 5.2E-21 174.6 16.7 259 30-320 551-830 (1012)
71 KOG0264 Nucleosome remodeling 99.7 9E-16 2E-20 165.9 20.5 183 80-264 136-351 (422)
72 KOG0308 Conserved WD40 repeat- 99.7 8.5E-17 1.9E-21 179.4 12.7 191 79-273 35-256 (735)
73 KOG0265 U5 snRNP-specific prot 99.7 1.7E-15 3.7E-20 156.9 20.6 165 102-271 42-215 (338)
74 KOG0302 Ribosome Assembly prot 99.7 4.6E-16 1E-20 164.9 16.3 182 79-260 163-378 (440)
75 KOG0289 mRNA splicing factor [ 99.7 2.3E-15 4.9E-20 161.9 21.3 173 80-255 272-452 (506)
76 KOG1332 Vesicle coat complex C 99.7 1.2E-15 2.6E-20 154.3 18.2 232 80-336 22-287 (299)
77 KOG0302 Ribosome Assembly prot 99.7 7.9E-16 1.7E-20 163.1 17.5 175 81-257 224-430 (440)
78 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.3E-14 2.9E-19 150.6 26.6 176 82-264 2-191 (300)
79 KOG1407 WD40 repeat protein [F 99.7 4E-15 8.7E-20 151.8 21.8 178 79-261 30-220 (313)
80 KOG0306 WD40-repeat-containing 99.7 7.6E-16 1.6E-20 174.0 18.0 181 77-261 462-660 (888)
81 KOG0643 Translation initiation 99.7 3.7E-15 8.1E-20 152.4 20.2 153 102-255 5-167 (327)
82 KOG0267 Microtubule severing p 99.7 9.1E-17 2E-21 180.8 9.1 173 78-255 37-215 (825)
83 KOG0293 WD40 repeat-containing 99.7 2.8E-15 6.2E-20 160.2 19.5 236 77-320 232-499 (519)
84 KOG0278 Serine/threonine kinas 99.7 4.2E-16 9.1E-21 157.9 12.3 211 80-320 70-284 (334)
85 KOG0643 Translation initiation 99.7 4E-15 8.6E-20 152.2 19.4 187 79-269 20-229 (327)
86 KOG0646 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 163.5 18.2 201 74-274 86-321 (476)
87 KOG1407 WD40 repeat protein [F 99.7 2.8E-15 6E-20 152.9 17.2 215 101-362 14-231 (313)
88 KOG0310 Conserved WD40 repeat- 99.7 3E-15 6.5E-20 163.1 18.6 170 79-255 121-299 (487)
89 KOG0274 Cdc4 and related F-box 99.7 4.6E-15 1E-19 170.2 21.2 182 79-271 259-452 (537)
90 KOG0288 WD40 repeat protein Ti 99.7 3.6E-16 7.8E-21 167.2 11.1 176 78-260 184-366 (459)
91 KOG0275 Conserved WD40 repeat- 99.7 1.3E-16 2.8E-21 165.9 7.5 163 105-271 211-389 (508)
92 KOG0277 Peroxisomal targeting 99.7 8.1E-16 1.8E-20 156.3 13.1 174 80-255 116-298 (311)
93 KOG0647 mRNA export protein (c 99.6 5E-14 1.1E-18 146.2 25.8 213 79-320 38-310 (347)
94 KOG0278 Serine/threonine kinas 99.6 1.5E-15 3.2E-20 154.0 13.8 179 72-255 103-287 (334)
95 KOG0299 U3 snoRNP-associated p 99.6 1.3E-14 2.9E-19 157.1 21.8 243 72-323 145-445 (479)
96 KOG0269 WD40 repeat-containing 99.6 1.5E-15 3.2E-20 172.3 14.7 173 80-255 145-329 (839)
97 KOG0313 Microtubule binding pr 99.6 5.9E-15 1.3E-19 156.7 17.9 181 74-260 198-413 (423)
98 KOG2096 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 151.3 20.0 187 72-260 89-308 (420)
99 KOG0316 Conserved WD40 repeat- 99.6 5E-15 1.1E-19 149.2 16.3 142 102-245 12-155 (307)
100 KOG0267 Microtubule severing p 99.6 2.4E-16 5.2E-21 177.4 7.5 170 80-253 81-256 (825)
101 KOG0293 WD40 repeat-containing 99.6 5.8E-15 1.2E-19 157.9 17.2 187 102-320 219-412 (519)
102 KOG0306 WD40-repeat-containing 99.6 5.1E-14 1.1E-18 159.4 24.5 182 77-262 420-619 (888)
103 KOG0296 Angio-associated migra 99.6 2.9E-14 6.3E-19 150.9 19.0 159 101-263 58-223 (399)
104 KOG2096 WD40 repeat protein [G 99.6 2.3E-14 5.1E-19 149.4 18.0 217 32-255 153-393 (420)
105 KOG0300 WD40 repeat-containing 99.6 1.4E-14 3E-19 150.7 16.1 182 79-264 158-390 (481)
106 KOG0973 Histone transcription 99.6 5.1E-14 1.1E-18 165.2 21.8 165 77-245 77-275 (942)
107 KOG4283 Transcription-coupled 99.6 3.3E-14 7.1E-19 147.0 17.7 176 79-255 54-266 (397)
108 KOG0288 WD40 repeat protein Ti 99.6 1.8E-14 3.9E-19 154.3 15.9 175 76-255 226-407 (459)
109 KOG0308 Conserved WD40 repeat- 99.6 1.9E-14 4.2E-19 160.8 16.7 172 80-255 84-275 (735)
110 KOG1274 WD40 repeat protein [G 99.6 4.2E-14 9.1E-19 163.2 19.8 188 72-261 57-263 (933)
111 KOG0270 WD40 repeat-containing 99.6 2.7E-14 5.8E-19 154.2 15.9 174 80-255 191-393 (463)
112 KOG0641 WD40 repeat protein [G 99.6 1.9E-13 4E-18 137.0 19.8 177 72-254 92-292 (350)
113 KOG0772 Uncharacterized conser 99.6 3E-14 6.5E-19 155.8 14.4 175 80-255 225-429 (641)
114 KOG1034 Transcriptional repres 99.5 3.2E-13 7E-18 141.5 20.1 140 81-222 65-213 (385)
115 PRK05137 tolB translocation pr 99.5 2.2E-12 4.7E-17 145.3 28.5 223 91-344 182-419 (435)
116 KOG1009 Chromatin assembly com 99.5 1.9E-13 4.1E-18 146.5 17.9 172 83-255 28-250 (434)
117 KOG1273 WD40 repeat protein [G 99.5 4.5E-13 9.7E-18 139.8 19.9 177 78-257 32-218 (405)
118 KOG1446 Histone H3 (Lys4) meth 99.5 1.4E-12 3E-17 136.4 23.5 185 80-270 67-272 (311)
119 KOG0268 Sof1-like rRNA process 99.5 5.3E-14 1.2E-18 148.8 12.9 210 82-320 80-332 (433)
120 KOG0301 Phospholipase A2-activ 99.5 8.1E-14 1.8E-18 156.9 14.8 172 79-261 69-245 (745)
121 KOG0299 U3 snoRNP-associated p 99.5 6.5E-13 1.4E-17 144.2 21.0 183 71-255 204-445 (479)
122 KOG4283 Transcription-coupled 99.5 2E-13 4.2E-18 141.3 16.1 199 103-321 39-264 (397)
123 KOG0307 Vesicle coat complex C 99.5 2.8E-14 6E-19 168.0 10.7 187 82-270 81-294 (1049)
124 KOG0294 WD40 repeat-containing 99.5 6.3E-13 1.4E-17 138.8 18.5 146 103-255 39-188 (362)
125 KOG1036 Mitotic spindle checkp 99.5 4.5E-12 9.7E-17 132.3 24.3 241 50-320 24-291 (323)
126 KOG1332 Vesicle coat complex C 99.5 2.2E-13 4.7E-18 138.2 14.1 183 78-260 67-281 (299)
127 KOG1408 WD40 repeat protein [F 99.5 2.9E-13 6.3E-18 152.2 16.0 192 66-260 456-713 (1080)
128 KOG0301 Phospholipase A2-activ 99.5 5.4E-13 1.2E-17 150.4 18.0 164 80-255 111-278 (745)
129 KOG1274 WD40 repeat protein [G 99.5 1.1E-12 2.4E-17 151.6 20.4 173 73-253 100-288 (933)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 5.6E-12 1.2E-16 130.9 23.8 184 79-268 82-287 (300)
131 PRK03629 tolB translocation pr 99.5 9.9E-12 2.1E-16 140.0 26.6 222 92-345 180-414 (429)
132 KOG1539 WD repeat protein [Gen 99.5 1.5E-12 3.2E-17 149.2 19.4 178 72-255 451-637 (910)
133 PRK04922 tolB translocation pr 99.5 9.9E-12 2.1E-16 140.0 25.5 221 92-344 185-418 (433)
134 KOG1034 Transcriptional repres 99.5 7.1E-13 1.5E-17 139.0 14.7 174 81-255 105-373 (385)
135 KOG0321 WD40 repeat-containing 99.5 1.6E-12 3.4E-17 145.5 17.6 188 70-257 53-293 (720)
136 KOG4328 WD40 protein [Function 99.5 2.6E-12 5.7E-17 139.4 18.7 185 77-262 196-396 (498)
137 KOG1445 Tumor-specific antigen 99.4 1.7E-12 3.8E-17 144.5 17.4 257 30-320 5-279 (1012)
138 KOG0303 Actin-binding protein 99.4 2.1E-12 4.7E-17 138.0 17.3 185 144-351 76-275 (472)
139 KOG0270 WD40 repeat-containing 99.4 1.8E-12 3.8E-17 140.4 16.8 176 75-255 250-438 (463)
140 KOG1539 WD repeat protein [Gen 99.4 6E-12 1.3E-16 144.3 21.7 213 82-325 413-639 (910)
141 PRK01742 tolB translocation pr 99.4 1.1E-11 2.3E-16 139.5 23.5 157 90-255 183-352 (429)
142 KOG0300 WD40 repeat-containing 99.4 1.7E-12 3.7E-17 135.3 15.1 190 81-278 124-360 (481)
143 KOG4378 Nuclear protein COP1 [ 99.4 2.3E-12 5E-17 140.6 16.0 172 80-255 90-270 (673)
144 KOG1408 WD40 repeat protein [F 99.4 1.1E-11 2.4E-16 139.7 21.1 191 79-269 390-680 (1080)
145 KOG2048 WD40 repeat protein [G 99.4 4.7E-11 1E-15 134.7 25.6 189 72-263 28-236 (691)
146 KOG0647 mRNA export protein (c 99.4 1.4E-11 3.1E-16 128.2 19.4 183 71-257 74-316 (347)
147 KOG2106 Uncharacterized conser 99.4 2.6E-11 5.7E-16 132.9 22.0 168 79-256 255-468 (626)
148 PRK02889 tolB translocation pr 99.4 6.8E-11 1.5E-15 133.1 26.3 218 92-341 177-407 (427)
149 KOG1009 Chromatin assembly com 99.4 3.3E-12 7.1E-17 137.1 14.4 145 107-255 13-185 (434)
150 KOG0639 Transducin-like enhanc 99.4 1.4E-12 3.1E-17 142.3 11.2 173 77-255 517-694 (705)
151 KOG0321 WD40 repeat-containing 99.4 3E-11 6.5E-16 135.4 20.1 182 80-263 111-350 (720)
152 KOG2055 WD40 repeat protein [G 99.4 2E-11 4.4E-16 132.7 17.9 175 79-255 267-455 (514)
153 KOG1036 Mitotic spindle checkp 99.4 5E-11 1.1E-15 124.5 19.8 169 80-254 24-196 (323)
154 TIGR02800 propeller_TolB tol-p 99.4 2.4E-10 5.2E-15 126.9 26.5 203 92-325 171-386 (417)
155 KOG4378 Nuclear protein COP1 [ 99.3 3.7E-11 8.1E-16 131.3 19.1 172 78-252 130-309 (673)
156 PRK00178 tolB translocation pr 99.3 4E-10 8.6E-15 126.5 26.4 221 92-344 180-413 (430)
157 KOG2110 Uncharacterized conser 99.3 1.4E-10 3.1E-15 123.5 20.9 160 62-223 78-251 (391)
158 KOG0642 Cell-cycle nuclear pro 99.3 1.3E-11 2.8E-16 137.0 13.5 176 78-257 303-553 (577)
159 KOG0771 Prolactin regulatory e 99.3 2E-11 4.2E-16 131.8 14.5 183 72-258 147-347 (398)
160 PRK04792 tolB translocation pr 99.3 4.8E-10 1E-14 127.1 26.1 221 92-344 199-432 (448)
161 KOG2445 Nuclear pore complex c 99.3 1.5E-10 3.4E-15 120.8 19.6 169 79-247 23-235 (361)
162 KOG1188 WD40 repeat protein [G 99.3 4.1E-11 8.8E-16 126.5 15.3 182 82-264 41-246 (376)
163 KOG1273 WD40 repeat protein [G 99.3 2.9E-11 6.2E-16 126.5 13.4 145 110-255 26-173 (405)
164 PRK11028 6-phosphogluconolacto 99.3 2.6E-09 5.7E-14 115.4 29.0 173 86-260 7-205 (330)
165 KOG0646 WD40 repeat protein [G 99.3 9.8E-11 2.1E-15 127.7 17.7 168 76-248 130-332 (476)
166 KOG2055 WD40 repeat protein [G 99.3 5.5E-11 1.2E-15 129.4 15.5 210 32-255 278-502 (514)
167 KOG1063 RNA polymerase II elon 99.3 2.5E-11 5.4E-16 137.1 13.0 191 55-246 511-734 (764)
168 KOG0641 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 114.5 19.0 140 80-220 193-349 (350)
169 KOG1523 Actin-related protein 99.3 3E-10 6.5E-15 119.3 20.0 218 77-322 18-268 (361)
170 KOG1310 WD40 repeat protein [G 99.3 8.8E-11 1.9E-15 129.7 16.7 154 102-255 45-220 (758)
171 COG2319 FOG: WD40 repeat [Gene 99.3 4.2E-10 9.2E-15 117.4 21.1 166 83-252 125-301 (466)
172 PF08662 eIF2A: Eukaryotic tra 99.3 4.8E-10 1E-14 113.3 20.6 142 111-260 9-168 (194)
173 KOG4227 WD40 repeat protein [G 99.3 8.2E-11 1.8E-15 125.5 15.0 161 102-263 51-228 (609)
174 PF08662 eIF2A: Eukaryotic tra 99.2 7.2E-10 1.6E-14 112.0 21.1 112 106-222 58-181 (194)
175 KOG2394 WD40 protein DMR-N9 [G 99.2 9.1E-11 2E-15 129.6 15.0 172 78-257 182-392 (636)
176 KOG0268 Sof1-like rRNA process 99.2 2.4E-11 5.2E-16 129.0 10.1 154 106-263 186-343 (433)
177 KOG0644 Uncharacterized conser 99.2 1.3E-11 2.9E-16 141.2 7.5 180 77-264 198-430 (1113)
178 KOG0307 Vesicle coat complex C 99.2 2.8E-11 6.1E-16 143.1 10.1 174 79-255 127-316 (1049)
179 KOG4328 WD40 protein [Function 99.2 2.4E-10 5.3E-15 124.3 16.2 175 80-254 246-439 (498)
180 KOG2139 WD40 repeat protein [G 99.2 8.1E-10 1.8E-14 117.5 19.2 169 80-255 109-300 (445)
181 KOG2048 WD40 repeat protein [G 99.2 9.1E-10 2E-14 124.5 20.7 171 80-255 79-265 (691)
182 KOG1523 Actin-related protein 99.2 2.2E-10 4.8E-15 120.3 14.5 147 107-254 10-165 (361)
183 KOG2919 Guanine nucleotide-bin 99.2 2.3E-10 5E-15 120.1 14.7 178 81-261 123-328 (406)
184 KOG1538 Uncharacterized conser 99.2 1.2E-10 2.7E-15 130.6 13.2 176 109-316 14-189 (1081)
185 PRK03629 tolB translocation pr 99.2 4E-09 8.7E-14 119.0 25.4 170 79-255 208-393 (429)
186 PRK01742 tolB translocation pr 99.2 9.7E-10 2.1E-14 123.8 20.3 168 79-255 213-391 (429)
187 KOG1007 WD repeat protein TSSC 99.2 1.7E-10 3.6E-15 119.7 12.7 147 105-255 121-278 (370)
188 KOG1524 WD40 repeat-containing 99.2 2.6E-10 5.6E-15 125.8 14.8 163 80-249 74-241 (737)
189 KOG1007 WD repeat protein TSSC 99.2 4.7E-10 1E-14 116.4 15.7 174 80-255 134-350 (370)
190 KOG0290 Conserved WD40 repeat- 99.2 2.8E-10 6E-15 118.2 13.9 170 89-260 119-318 (364)
191 PRK04922 tolB translocation pr 99.2 3.1E-09 6.6E-14 119.9 23.7 169 80-255 214-398 (433)
192 COG2319 FOG: WD40 repeat [Gene 99.2 7E-09 1.5E-13 108.2 24.3 176 75-253 161-346 (466)
193 KOG0649 WD40 repeat protein [G 99.2 1.3E-09 2.9E-14 110.8 18.0 138 109-255 116-264 (325)
194 KOG1524 WD40 repeat-containing 99.2 4.9E-10 1.1E-14 123.7 15.9 160 79-255 114-276 (737)
195 PRK05137 tolB translocation pr 99.2 6.7E-09 1.4E-13 117.1 25.4 170 79-255 211-396 (435)
196 KOG2919 Guanine nucleotide-bin 99.2 9.9E-10 2.2E-14 115.5 16.7 173 77-254 166-358 (406)
197 KOG1188 WD40 repeat protein [G 99.1 6.2E-10 1.3E-14 117.8 14.8 153 72-224 75-246 (376)
198 PRK01029 tolB translocation pr 99.1 1.3E-08 2.9E-13 114.8 26.4 226 92-346 166-412 (428)
199 KOG1063 RNA polymerase II elon 99.1 3.3E-10 7.2E-15 128.2 13.1 142 102-245 520-674 (764)
200 KOG2106 Uncharacterized conser 99.1 2.5E-09 5.5E-14 117.5 18.9 214 35-255 287-511 (626)
201 PRK04043 tolB translocation pr 99.1 5.8E-08 1.3E-12 109.4 30.1 211 109-346 189-409 (419)
202 KOG2445 Nuclear pore complex c 99.1 6.3E-09 1.4E-13 109.0 20.0 143 104-246 10-180 (361)
203 KOG4227 WD40 repeat protein [G 99.1 2.9E-09 6.2E-14 114.0 17.7 248 78-331 65-344 (609)
204 KOG2110 Uncharacterized conser 99.1 3.1E-09 6.8E-14 113.5 17.7 158 91-255 68-238 (391)
205 PRK02889 tolB translocation pr 99.1 1.1E-08 2.3E-13 115.4 23.0 170 79-255 205-390 (427)
206 PRK11028 6-phosphogluconolacto 99.1 1.7E-08 3.6E-13 109.2 23.7 180 75-255 85-293 (330)
207 KOG0290 Conserved WD40 repeat- 99.1 1.7E-09 3.6E-14 112.5 14.8 176 77-252 159-353 (364)
208 KOG1538 Uncharacterized conser 99.0 1.8E-08 3.9E-13 113.5 21.7 204 89-326 31-286 (1081)
209 KOG0771 Prolactin regulatory e 99.0 1.3E-09 2.7E-14 118.0 12.0 145 111-257 148-303 (398)
210 KOG2139 WD40 repeat protein [G 99.0 2.8E-08 6.1E-13 106.0 21.1 149 105-255 194-365 (445)
211 PRK01029 tolB translocation pr 99.0 2.6E-08 5.6E-13 112.5 22.4 159 92-255 212-390 (428)
212 KOG0650 WD40 repeat nucleolar 99.0 1E-08 2.2E-13 114.8 17.2 149 103-255 396-586 (733)
213 TIGR02800 propeller_TolB tol-p 99.0 7.3E-08 1.6E-12 107.1 24.3 170 79-255 199-384 (417)
214 PRK00178 tolB translocation pr 99.0 1.1E-07 2.4E-12 106.7 25.4 169 80-255 209-393 (430)
215 KOG1310 WD40 repeat protein [G 99.0 3.6E-09 7.7E-14 117.3 12.4 142 79-220 60-231 (758)
216 KOG0644 Uncharacterized conser 99.0 3.8E-10 8.3E-15 129.5 4.4 115 102-220 185-300 (1113)
217 KOG2394 WD40 protein DMR-N9 [G 98.9 3E-09 6.5E-14 117.8 9.1 94 107-201 290-384 (636)
218 PRK04792 tolB translocation pr 98.9 1.8E-07 3.9E-12 106.3 23.6 169 80-255 228-412 (448)
219 KOG1587 Cytoplasmic dynein int 98.9 1.8E-07 3.8E-12 108.0 21.1 216 78-320 252-503 (555)
220 KOG0649 WD40 repeat protein [G 98.8 9.5E-08 2.1E-12 97.6 16.6 180 79-264 20-239 (325)
221 KOG0322 G-protein beta subunit 98.8 1.3E-08 2.8E-13 104.8 10.4 138 81-219 165-322 (323)
222 KOG2111 Uncharacterized conser 98.8 1.6E-07 3.5E-12 99.1 18.5 166 57-224 78-260 (346)
223 KOG0650 WD40 repeat nucleolar 98.8 1E-07 2.2E-12 107.0 17.9 178 73-255 404-627 (733)
224 KOG0642 Cell-cycle nuclear pro 98.8 5.1E-08 1.1E-12 108.8 14.4 156 68-224 343-565 (577)
225 KOG0974 WD-repeat protein WDR6 98.8 3.1E-08 6.7E-13 116.9 13.3 141 79-222 143-290 (967)
226 KOG0322 G-protein beta subunit 98.8 3.2E-08 7E-13 102.0 10.4 147 105-255 148-313 (323)
227 KOG4547 WD40 repeat-containing 98.8 3.8E-07 8.2E-12 102.6 19.6 171 80-255 4-209 (541)
228 KOG1240 Protein kinase contain 98.8 2.3E-07 4.9E-12 111.0 18.7 194 78-273 1058-1286(1431)
229 KOG1517 Guanine nucleotide bin 98.8 9.9E-08 2.1E-12 112.5 15.3 173 81-253 1177-1369(1387)
230 KOG1963 WD40 repeat protein [G 98.7 1.6E-06 3.4E-11 101.3 24.4 213 80-323 27-312 (792)
231 KOG1272 WD40-repeat-containing 98.7 2.7E-08 5.8E-13 108.9 9.1 167 80-248 220-392 (545)
232 KOG1517 Guanine nucleotide bin 98.7 4E-07 8.6E-12 107.5 19.2 182 72-254 1114-1323(1387)
233 KOG1272 WD40-repeat-containing 98.7 2E-08 4.4E-13 109.8 8.0 195 69-270 129-333 (545)
234 COG2706 3-carboxymuconate cycl 98.7 7.6E-06 1.7E-10 88.0 26.6 165 90-255 15-210 (346)
235 KOG4497 Uncharacterized conser 98.7 2.4E-07 5.1E-12 98.1 14.9 138 112-255 13-153 (447)
236 PF02239 Cytochrom_D1: Cytochr 98.7 1.9E-06 4.1E-11 95.7 21.9 167 85-255 10-191 (369)
237 KOG2321 WD40 repeat protein [G 98.7 3.4E-07 7.3E-12 102.5 14.9 168 81-253 145-331 (703)
238 KOG3881 Uncharacterized conser 98.6 1.2E-06 2.7E-11 94.5 17.7 172 80-254 114-309 (412)
239 KOG4497 Uncharacterized conser 98.6 6.6E-06 1.4E-10 87.3 22.5 141 75-217 55-237 (447)
240 PF10282 Lactonase: Lactonase, 98.6 2.1E-05 4.6E-10 86.2 27.9 164 91-255 13-211 (345)
241 KOG2321 WD40 repeat protein [G 98.6 2.1E-06 4.5E-11 96.4 19.6 157 112-273 138-315 (703)
242 KOG1587 Cytoplasmic dynein int 98.6 1E-06 2.2E-11 101.8 17.0 171 82-254 306-505 (555)
243 KOG2111 Uncharacterized conser 98.6 2.9E-06 6.4E-11 89.7 18.7 162 90-255 74-246 (346)
244 PF02239 Cytochrom_D1: Cytochr 98.6 2.5E-06 5.4E-11 94.7 19.0 134 120-254 6-146 (369)
245 KOG1240 Protein kinase contain 98.6 6.4E-06 1.4E-10 99.0 22.9 157 102-260 1043-1225(1431)
246 PRK04043 tolB translocation pr 98.6 1.3E-05 2.7E-10 90.6 24.5 185 129-346 169-366 (419)
247 KOG0974 WD-repeat protein WDR6 98.5 1.9E-06 4.2E-11 102.0 16.8 175 79-260 97-283 (967)
248 PF10282 Lactonase: Lactonase, 98.5 3.1E-05 6.7E-10 85.0 24.8 181 74-255 91-311 (345)
249 KOG0280 Uncharacterized conser 98.5 3.1E-06 6.8E-11 88.7 15.8 163 83-248 87-266 (339)
250 KOG0280 Uncharacterized conser 98.5 1.6E-06 3.6E-11 90.8 13.4 148 77-224 129-288 (339)
251 KOG3881 Uncharacterized conser 98.4 2.5E-06 5.5E-11 92.1 12.1 122 81-203 216-343 (412)
252 KOG3914 WD repeat protein WDR4 98.4 2E-06 4.3E-11 93.3 11.2 133 89-223 130-280 (390)
253 KOG2315 Predicted translation 98.4 9.8E-06 2.1E-10 91.0 17.0 148 88-246 248-411 (566)
254 KOG1963 WD40 repeat protein [G 98.4 1.9E-05 4.2E-10 92.4 19.3 141 81-222 171-324 (792)
255 COG4946 Uncharacterized protei 98.3 4.1E-05 9E-10 84.6 20.3 168 80-254 331-507 (668)
256 COG2706 3-carboxymuconate cycl 98.3 0.0013 2.9E-08 71.1 31.0 144 111-255 92-263 (346)
257 COG4946 Uncharacterized protei 98.3 3.1E-05 6.7E-10 85.6 18.5 130 80-210 370-507 (668)
258 KOG4547 WD40 repeat-containing 98.3 2.4E-05 5.1E-10 88.5 17.1 140 80-222 69-222 (541)
259 KOG4532 WD40-like repeat conta 98.2 6.4E-05 1.4E-09 78.3 17.1 175 79-254 126-321 (344)
260 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0014 3E-08 72.5 28.0 210 91-320 27-316 (352)
261 KOG4190 Uncharacterized conser 98.1 7.1E-06 1.5E-10 91.4 9.2 151 74-226 740-912 (1034)
262 PF00400 WD40: WD domain, G-be 98.1 6.7E-06 1.5E-10 60.5 6.1 39 139-178 1-39 (39)
263 KOG1334 WD40 repeat protein [G 98.1 1.4E-05 3.1E-10 88.4 10.4 177 79-255 152-356 (559)
264 KOG1334 WD40 repeat protein [G 98.1 2.8E-05 6E-10 86.2 12.5 154 102-255 137-301 (559)
265 KOG1354 Serine/threonine prote 98.1 0.00019 4.1E-09 77.0 17.7 147 105-254 162-348 (433)
266 KOG1832 HIV-1 Vpr-binding prot 98.0 5.3E-06 1.1E-10 96.6 5.5 178 73-263 1105-1294(1516)
267 PLN02919 haloacid dehalogenase 98.0 0.0005 1.1E-08 86.0 23.1 167 84-252 639-875 (1057)
268 KOG3914 WD repeat protein WDR4 98.0 3.8E-05 8.2E-10 83.5 11.5 100 124-226 127-229 (390)
269 PLN02919 haloacid dehalogenase 98.0 0.00032 7E-09 87.7 21.3 144 80-224 694-892 (1057)
270 COG0823 TolB Periplasmic compo 98.0 0.00022 4.8E-09 80.6 18.0 147 103-254 188-344 (425)
271 PF08450 SGL: SMP-30/Gluconola 98.0 0.0012 2.7E-08 68.4 22.1 169 80-252 11-200 (246)
272 KOG2315 Predicted translation 97.9 0.00032 6.9E-09 79.2 17.5 136 111-255 221-374 (566)
273 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.0071 1.5E-07 66.9 25.7 95 129-226 27-142 (352)
274 KOG1354 Serine/threonine prote 97.8 0.00021 4.6E-09 76.6 12.7 114 107-220 25-193 (433)
275 PF00400 WD40: WD domain, G-be 97.8 2.8E-05 6.1E-10 57.2 4.4 34 102-135 6-39 (39)
276 KOG2314 Translation initiation 97.8 0.00012 2.6E-09 82.4 11.1 136 110-252 213-363 (698)
277 KOG1832 HIV-1 Vpr-binding prot 97.8 2.2E-05 4.8E-10 91.6 5.3 236 102-349 1096-1347(1516)
278 KOG2066 Vacuolar assembly/sort 97.8 0.00055 1.2E-08 80.1 16.4 162 80-251 48-221 (846)
279 KOG4190 Uncharacterized conser 97.8 2.9E-05 6.2E-10 86.8 5.6 150 101-253 729-894 (1034)
280 KOG4532 WD40-like repeat conta 97.7 0.0035 7.6E-08 65.7 19.9 168 80-248 83-263 (344)
281 KOG4714 Nucleoporin [Nuclear s 97.7 0.00013 2.8E-09 75.8 9.3 73 109-181 181-255 (319)
282 KOG2695 WD40 repeat protein [G 97.7 0.0001 2.2E-09 79.0 8.7 141 85-226 228-382 (425)
283 KOG1409 Uncharacterized conser 97.7 0.00046 1E-08 74.1 13.6 173 80-255 35-260 (404)
284 PF11768 DUF3312: Protein of u 97.7 0.0021 4.6E-08 73.4 19.7 113 109-223 207-332 (545)
285 COG0823 TolB Periplasmic compo 97.7 0.0011 2.3E-08 75.2 17.4 163 130-322 174-344 (425)
286 PF04762 IKI3: IKI3 family; I 97.7 0.0038 8.3E-08 77.1 22.3 140 107-249 209-362 (928)
287 PF07433 DUF1513: Protein of u 97.6 0.0089 1.9E-07 64.5 22.0 202 31-254 25-275 (305)
288 COG5170 CDC55 Serine/threonine 97.6 0.00052 1.1E-08 72.8 12.2 148 105-255 170-357 (460)
289 PF08450 SGL: SMP-30/Gluconola 97.6 0.018 3.9E-07 59.7 23.6 166 81-254 51-244 (246)
290 COG5354 Uncharacterized protei 97.6 0.0022 4.9E-08 71.9 17.2 152 91-257 255-421 (561)
291 PF07433 DUF1513: Protein of u 97.6 0.016 3.4E-07 62.7 22.8 192 109-320 6-233 (305)
292 COG5170 CDC55 Serine/threonine 97.5 0.00089 1.9E-08 71.1 12.2 184 79-264 36-313 (460)
293 KOG1275 PAB-dependent poly(A) 97.5 0.0018 3.8E-08 76.8 15.0 171 80-255 146-332 (1118)
294 KOG2041 WD40 repeat protein [G 97.5 0.00095 2.1E-08 77.0 12.5 100 79-179 24-144 (1189)
295 KOG1064 RAVE (regulator of V-A 97.5 0.00034 7.4E-09 87.3 9.4 142 79-226 2218-2372(2439)
296 KOG1645 RING-finger-containing 97.5 0.00084 1.8E-08 73.4 11.2 152 102-255 188-350 (463)
297 KOG1275 PAB-dependent poly(A) 97.4 0.00095 2E-08 79.0 11.7 141 75-218 181-340 (1118)
298 KOG2041 WD40 repeat protein [G 97.4 0.0004 8.7E-09 80.0 8.3 142 106-252 13-173 (1189)
299 COG5354 Uncharacterized protei 97.4 0.024 5.2E-07 64.0 21.7 252 80-360 43-325 (561)
300 KOG4714 Nucleoporin [Nuclear s 97.4 0.00036 7.9E-09 72.5 7.0 142 80-221 100-255 (319)
301 KOG2066 Vacuolar assembly/sort 97.4 0.0021 4.5E-08 75.5 13.7 135 107-255 39-178 (846)
302 KOG2695 WD40 repeat protein [G 97.4 0.00046 9.9E-09 74.2 7.7 120 80-200 263-401 (425)
303 PF15492 Nbas_N: Neuroblastoma 97.4 0.05 1.1E-06 57.7 22.5 173 79-253 7-247 (282)
304 KOG1645 RING-finger-containing 97.3 0.0012 2.6E-08 72.3 10.6 94 131-224 175-270 (463)
305 KOG0309 Conserved WD40 repeat- 97.3 0.00049 1.1E-08 79.6 8.0 163 82-248 83-258 (1081)
306 KOG1409 Uncharacterized conser 97.3 0.0042 9.1E-08 67.0 14.4 152 72-224 71-274 (404)
307 PF11768 DUF3312: Protein of u 97.3 0.00088 1.9E-08 76.5 9.7 76 105-183 257-332 (545)
308 PF15492 Nbas_N: Neuroblastoma 97.3 0.11 2.3E-06 55.3 23.8 141 113-255 3-167 (282)
309 PF04762 IKI3: IKI3 family; I 97.2 0.0094 2E-07 73.8 18.4 171 79-254 85-323 (928)
310 KOG2314 Translation initiation 97.2 0.026 5.6E-07 64.2 19.9 175 73-254 214-412 (698)
311 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.028 6E-07 62.0 19.9 232 90-349 22-328 (353)
312 KOG1912 WD40 repeat protein [G 97.2 0.0026 5.6E-08 74.3 11.6 132 109-245 17-165 (1062)
313 KOG0309 Conserved WD40 repeat- 97.2 0.0047 1E-07 71.9 13.3 134 109-245 69-211 (1081)
314 TIGR03300 assembly_YfgL outer 97.1 0.0055 1.2E-07 67.6 13.7 131 81-217 241-376 (377)
315 KOG1920 IkappaB kinase complex 97.1 0.024 5.2E-07 69.5 19.3 173 78-252 77-306 (1265)
316 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.021 4.7E-07 62.9 17.8 92 116-210 1-119 (353)
317 PF14583 Pectate_lyase22: Olig 97.0 0.032 7E-07 62.0 18.2 172 79-252 46-254 (386)
318 PF02897 Peptidase_S9_N: Proly 97.0 0.13 2.7E-06 57.7 23.2 245 77-345 131-412 (414)
319 KOG1008 Uncharacterized conser 97.0 0.00018 3.9E-09 82.2 -0.0 169 82-254 71-262 (783)
320 TIGR03300 assembly_YfgL outer 96.9 0.014 3.1E-07 64.4 14.6 137 81-225 65-213 (377)
321 PF13360 PQQ_2: PQQ-like domai 96.9 0.016 3.6E-07 58.9 14.0 106 118-226 35-146 (238)
322 KOG1064 RAVE (regulator of V-A 96.9 0.0047 1E-07 77.7 10.7 154 103-261 2204-2367(2439)
323 PF13360 PQQ_2: PQQ-like domai 96.9 0.04 8.6E-07 56.0 16.1 140 80-224 75-234 (238)
324 PRK02888 nitrous-oxide reducta 96.8 0.03 6.5E-07 65.6 16.5 100 118-221 287-405 (635)
325 smart00320 WD40 WD40 repeats. 96.8 0.0035 7.6E-08 42.6 5.6 39 139-178 2-40 (40)
326 KOG2114 Vacuolar assembly/sort 96.7 0.15 3.3E-06 60.9 21.1 176 77-255 31-234 (933)
327 KOG0882 Cyclophilin-related pe 96.6 0.0031 6.7E-08 69.9 5.9 142 82-224 21-235 (558)
328 PRK13616 lipoprotein LpqB; Pro 96.6 0.04 8.8E-07 65.1 15.6 139 106-250 348-511 (591)
329 KOG1912 WD40 repeat protein [G 96.6 0.039 8.4E-07 64.9 14.8 136 84-219 28-185 (1062)
330 PF08553 VID27: VID27 cytoplas 96.6 0.027 5.8E-07 68.0 14.1 133 118-255 492-638 (794)
331 PRK10115 protease 2; Provision 96.6 2.6 5.7E-05 51.0 31.0 230 92-348 154-405 (686)
332 KOG4640 Anaphase-promoting com 96.6 0.01 2.2E-07 68.3 9.9 93 107-201 20-115 (665)
333 COG3391 Uncharacterized conser 96.5 0.29 6.3E-06 54.8 21.2 146 109-255 75-226 (381)
334 KOG3621 WD40 repeat-containing 96.5 0.012 2.6E-07 68.5 10.1 138 106-244 32-179 (726)
335 COG3391 Uncharacterized conser 96.4 0.44 9.5E-06 53.4 21.4 167 83-253 88-270 (381)
336 PRK02888 nitrous-oxide reducta 96.3 0.085 1.8E-06 62.0 15.7 134 113-248 198-387 (635)
337 KOG3621 WD40 repeat-containing 96.2 0.077 1.7E-06 62.1 14.5 143 77-222 41-199 (726)
338 PF04053 Coatomer_WDAD: Coatom 96.1 0.092 2E-06 60.0 14.5 131 109-255 34-164 (443)
339 PF02897 Peptidase_S9_N: Proly 96.1 0.34 7.4E-06 54.2 18.7 157 93-253 109-294 (414)
340 PF08953 DUF1899: Domain of un 96.0 0.004 8.7E-08 52.2 2.1 43 30-72 3-45 (65)
341 smart00320 WD40 WD40 repeats. 96.0 0.01 2.2E-07 40.2 3.9 32 104-135 9-40 (40)
342 KOG4640 Anaphase-promoting com 95.9 0.029 6.3E-07 64.8 9.3 92 150-245 21-115 (665)
343 KOG4649 PQQ (pyrrolo-quinoline 95.8 0.26 5.6E-06 52.0 14.8 134 77-213 19-158 (354)
344 PF10647 Gmad1: Lipoprotein Lp 95.8 0.42 9.2E-06 50.4 16.9 143 109-255 25-185 (253)
345 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.49 1.1E-05 44.0 15.0 98 110-214 2-108 (111)
346 KOG2114 Vacuolar assembly/sort 95.7 0.56 1.2E-05 56.3 18.8 135 114-249 30-185 (933)
347 KOG1920 IkappaB kinase complex 95.7 0.84 1.8E-05 56.7 20.3 142 108-255 69-261 (1265)
348 COG3204 Uncharacterized protei 95.6 0.57 1.2E-05 50.3 16.7 152 102-254 80-251 (316)
349 KOG0882 Cyclophilin-related pe 95.5 0.13 2.9E-06 57.4 12.1 141 85-226 116-311 (558)
350 KOG3617 WD40 and TPR repeat-co 95.5 0.036 7.9E-07 65.6 7.9 111 111-224 19-135 (1416)
351 PRK11138 outer membrane biogen 95.5 0.22 4.8E-06 55.5 14.1 132 81-219 256-393 (394)
352 PF04053 Coatomer_WDAD: Coatom 95.4 0.14 3E-06 58.6 12.1 157 80-246 43-207 (443)
353 PRK11138 outer membrane biogen 95.3 0.62 1.3E-05 52.0 16.8 137 83-226 207-359 (394)
354 COG3386 Gluconolactonase [Carb 95.1 2.6 5.6E-05 46.0 20.5 144 108-257 111-277 (307)
355 PF00780 CNH: CNH domain; Int 95.1 1.7 3.6E-05 45.7 18.6 142 79-224 5-169 (275)
356 PF00780 CNH: CNH domain; Int 95.1 0.72 1.6E-05 48.4 15.7 131 118-254 6-155 (275)
357 PF14583 Pectate_lyase22: Olig 95.1 1.4 3.1E-05 49.3 18.3 141 110-255 38-207 (386)
358 PF15390 DUF4613: Domain of un 94.8 1.4 3.1E-05 51.2 17.9 150 103-255 52-221 (671)
359 PF06977 SdiA-regulated: SdiA- 94.6 1 2.2E-05 47.7 15.3 150 102-254 16-189 (248)
360 COG3386 Gluconolactonase [Carb 94.5 2 4.4E-05 46.9 17.6 137 80-220 36-193 (307)
361 PF06977 SdiA-regulated: SdiA- 94.5 1.8 4E-05 45.8 16.7 112 105-217 115-247 (248)
362 PF05096 Glu_cyclase_2: Glutam 94.4 2 4.3E-05 45.9 16.6 108 110-221 47-158 (264)
363 KOG2395 Protein involved in va 94.4 0.36 7.7E-06 55.2 11.6 133 117-255 343-491 (644)
364 KOG3630 Nuclear pore complex, 94.4 0.65 1.4E-05 57.3 14.3 167 109-277 102-289 (1405)
365 PF10647 Gmad1: Lipoprotein Lp 94.1 3 6.6E-05 44.0 17.7 102 151-255 25-131 (253)
366 PRK13616 lipoprotein LpqB; Pro 94.1 1.4 3.1E-05 52.3 16.4 130 109-245 398-550 (591)
367 TIGR02604 Piru_Ver_Nterm putat 93.9 2.2 4.7E-05 47.5 16.7 99 109-210 15-142 (367)
368 PRK10115 protease 2; Provision 93.2 4.4 9.6E-05 49.1 19.1 111 108-221 127-256 (686)
369 COG3490 Uncharacterized protei 93.2 5.5 0.00012 42.9 17.1 169 77-255 44-244 (366)
370 PF14870 PSII_BNR: Photosynthe 93.1 6.4 0.00014 43.0 18.2 147 103-252 140-292 (302)
371 KOG2395 Protein involved in va 93.1 0.84 1.8E-05 52.4 11.6 136 81-220 346-500 (644)
372 PF08553 VID27: VID27 cytoplas 93.0 1.4 3.1E-05 53.6 14.2 130 88-220 501-647 (794)
373 PF04841 Vps16_N: Vps16, N-ter 92.9 13 0.00028 42.2 21.2 164 77-248 87-272 (410)
374 KOG1008 Uncharacterized conser 92.9 0.039 8.5E-07 63.8 1.0 131 89-221 127-276 (783)
375 PF05694 SBP56: 56kDa selenium 92.8 13 0.00028 42.5 20.4 174 80-254 86-330 (461)
376 KOG2079 Vacuolar assembly/sort 92.8 0.48 1E-05 58.1 9.8 96 81-179 99-202 (1206)
377 PF12894 Apc4_WD40: Anaphase-p 92.3 0.42 9E-06 37.6 5.7 34 107-141 11-44 (47)
378 COG3490 Uncharacterized protei 92.2 3.2 7E-05 44.6 13.8 187 31-226 88-316 (366)
379 PF03178 CPSF_A: CPSF A subuni 92.1 2.7 5.8E-05 45.6 13.9 129 119-254 42-191 (321)
380 PF12234 Rav1p_C: RAVE protein 92.0 2.6 5.6E-05 50.2 14.4 109 110-221 32-157 (631)
381 PF15390 DUF4613: Domain of un 92.0 2.9 6.2E-05 48.9 14.2 138 108-255 20-175 (671)
382 KOG4649 PQQ (pyrrolo-quinoline 91.5 6 0.00013 42.1 14.7 101 80-182 62-167 (354)
383 cd00216 PQQ_DH Dehydrogenases 91.4 5.5 0.00012 46.1 16.2 100 121-226 303-430 (488)
384 PF14783 BBS2_Mid: Ciliary BBS 91.3 3.9 8.4E-05 38.1 11.9 66 152-219 2-70 (111)
385 PRK13684 Ycf48-like protein; P 91.3 24 0.00051 38.9 20.3 141 107-252 172-319 (334)
386 cd00216 PQQ_DH Dehydrogenases 91.0 5.1 0.00011 46.4 15.5 105 81-189 61-192 (488)
387 KOG2444 WD40 repeat protein [G 91.0 1.3 2.7E-05 46.2 9.2 105 76-181 65-178 (238)
388 PF12234 Rav1p_C: RAVE protein 90.0 4.6 9.9E-05 48.2 13.9 104 151-255 31-148 (631)
389 PF13449 Phytase-like: Esteras 89.7 15 0.00033 40.1 17.1 144 107-252 19-231 (326)
390 PF12894 Apc4_WD40: Anaphase-p 89.3 0.86 1.9E-05 35.8 5.0 34 149-184 11-44 (47)
391 KOG3617 WD40 and TPR repeat-co 89.3 0.64 1.4E-05 55.6 6.1 91 89-181 39-132 (1416)
392 PF07569 Hira: TUP1-like enhan 89.2 2.2 4.8E-05 44.2 9.5 63 161-223 21-98 (219)
393 TIGR02604 Piru_Ver_Nterm putat 89.1 12 0.00026 41.6 15.9 101 107-210 71-202 (367)
394 PF06433 Me-amine-dh_H: Methyl 88.9 29 0.00063 38.5 18.1 146 81-226 147-326 (342)
395 PF08596 Lgl_C: Lethal giant l 88.5 9 0.0002 43.4 14.5 77 142-220 79-173 (395)
396 COG1506 DAP2 Dipeptidyl aminop 88.4 65 0.0014 38.6 23.3 144 102-255 54-235 (620)
397 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.3 17 0.00037 42.7 17.1 55 172-226 441-496 (527)
398 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.2 16 0.00035 42.9 16.8 74 129-204 441-516 (527)
399 TIGR03606 non_repeat_PQQ dehyd 88.1 31 0.00066 39.9 18.4 105 108-212 30-166 (454)
400 KOG4499 Ca2+-binding protein R 87.8 10 0.00022 40.0 12.8 100 110-210 160-273 (310)
401 KOG2079 Vacuolar assembly/sort 87.7 1.7 3.6E-05 53.7 8.3 100 118-219 98-202 (1206)
402 KOG2444 WD40 repeat protein [G 87.7 1.6 3.4E-05 45.4 7.1 103 119-221 70-178 (238)
403 TIGR03074 PQQ_membr_DH membran 87.3 12 0.00025 46.1 15.3 108 119-226 194-350 (764)
404 PF05694 SBP56: 56kDa selenium 86.5 10 0.00022 43.3 13.1 147 109-255 182-393 (461)
405 KOG3630 Nuclear pore complex, 86.4 45 0.00098 42.1 19.1 122 86-210 119-262 (1405)
406 PF04841 Vps16_N: Vps16, N-ter 86.4 27 0.00058 39.7 16.8 79 81-159 190-269 (410)
407 COG5167 VID27 Protein involved 86.0 9.6 0.00021 44.0 12.5 136 115-255 475-623 (776)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 85.4 5 0.00011 45.7 10.2 85 105-189 305-407 (415)
409 PF06433 Me-amine-dh_H: Methyl 85.4 5.1 0.00011 44.3 9.9 83 109-192 239-332 (342)
410 PF10214 Rrn6: RNA polymerase 85.3 1E+02 0.0023 38.0 25.2 210 105-328 77-333 (765)
411 PF08596 Lgl_C: Lethal giant l 84.3 18 0.0004 40.9 14.1 176 79-254 95-325 (395)
412 PF03178 CPSF_A: CPSF A subuni 82.9 13 0.00029 40.1 12.0 125 91-221 62-203 (321)
413 KOG2377 Uncharacterized conser 82.7 15 0.00032 42.0 12.1 105 147-255 64-173 (657)
414 KOG1897 Damage-specific DNA bi 82.6 1.3E+02 0.0029 37.6 20.6 146 107-253 487-647 (1096)
415 PF14781 BBS2_N: Ciliary BBSom 81.8 22 0.00048 34.3 11.3 109 113-223 4-128 (136)
416 PF14870 PSII_BNR: Photosynthe 81.6 42 0.0009 36.7 15.0 136 78-217 153-301 (302)
417 PLN00033 photosystem II stabil 81.2 55 0.0012 37.2 16.3 138 110-253 241-388 (398)
418 PF14781 BBS2_N: Ciliary BBSom 80.2 49 0.0011 32.0 13.1 85 155-244 4-101 (136)
419 TIGR03606 non_repeat_PQQ dehyd 80.0 52 0.0011 38.0 15.7 112 144-256 24-166 (454)
420 PF14761 HPS3_N: Hermansky-Pud 79.8 33 0.00072 35.6 12.7 102 120-223 29-166 (215)
421 TIGR03074 PQQ_membr_DH membran 79.2 1.2E+02 0.0026 37.5 19.3 145 81-226 260-483 (764)
422 PF08728 CRT10: CRT10; InterP 79.1 63 0.0014 39.3 16.5 87 161-247 113-222 (717)
423 KOG4499 Ca2+-binding protein R 78.8 37 0.0008 35.9 12.6 100 69-168 158-272 (310)
424 COG3823 Glutamine cyclotransfe 78.6 16 0.00034 38.0 9.7 23 235-257 228-250 (262)
425 PF10313 DUF2415: Uncharacteri 78.6 7.4 0.00016 30.2 5.7 32 108-139 1-35 (43)
426 PF07995 GSDH: Glucose / Sorbo 77.9 21 0.00045 39.2 11.5 100 109-210 3-132 (331)
427 PF10313 DUF2415: Uncharacteri 77.5 5.9 0.00013 30.7 4.9 32 150-181 1-34 (43)
428 COG3204 Uncharacterized protei 77.4 25 0.00055 38.2 11.3 110 145-255 81-200 (316)
429 COG4257 Vgb Streptogramin lyas 76.5 56 0.0012 35.4 13.4 129 109-252 63-205 (353)
430 KOG2247 WD40 repeat-containing 76.4 0.46 1E-05 54.0 -1.9 142 106-252 33-176 (615)
431 KOG1897 Damage-specific DNA bi 76.0 55 0.0012 40.8 14.8 156 93-252 752-930 (1096)
432 TIGR02276 beta_rpt_yvtn 40-res 74.6 16 0.00034 26.7 6.6 40 117-157 1-41 (42)
433 KOG1916 Nuclear protein, conta 74.3 3.4 7.5E-05 50.2 4.3 105 80-185 194-328 (1283)
434 TIGR03032 conserved hypothetic 72.7 42 0.00092 36.9 11.7 107 133-247 189-316 (335)
435 COG1770 PtrB Protease II [Amin 72.1 2.3E+02 0.005 34.2 28.7 273 55-351 113-410 (682)
436 KOG2377 Uncharacterized conser 71.4 80 0.0017 36.4 13.7 115 106-223 65-188 (657)
437 PHA03098 kelch-like protein; P 71.3 1.3E+02 0.0029 34.8 16.6 126 92-223 312-467 (534)
438 PLN00033 photosystem II stabil 70.6 1.8E+02 0.0038 33.1 16.7 107 106-217 279-396 (398)
439 PF05935 Arylsulfotrans: Aryls 70.4 2.1E+02 0.0046 33.1 18.1 85 121-210 117-208 (477)
440 PF07995 GSDH: Glucose / Sorbo 70.4 34 0.00073 37.6 10.8 105 151-258 3-136 (331)
441 PHA02713 hypothetical protein; 70.2 1.8E+02 0.0038 34.5 17.3 125 91-221 320-489 (557)
442 PF03088 Str_synth: Strictosid 70.2 21 0.00046 31.9 7.4 46 168-213 33-78 (89)
443 PF07569 Hira: TUP1-like enhan 70.0 32 0.0007 35.6 10.0 70 115-186 18-101 (219)
444 PF10214 Rrn6: RNA polymerase 69.3 87 0.0019 38.6 15.0 112 109-222 147-278 (765)
445 KOG1520 Predicted alkaloid syn 69.0 1.6E+02 0.0036 33.1 15.5 175 75-253 70-282 (376)
446 TIGR02276 beta_rpt_yvtn 40-res 68.7 18 0.00039 26.4 5.7 40 161-200 3-42 (42)
447 KOG4441 Proteins containing BT 68.6 1.7E+02 0.0038 34.8 16.8 141 80-224 332-503 (571)
448 KOG4460 Nuclear pore complex, 68.3 30 0.00065 40.3 9.7 79 109-187 105-205 (741)
449 PF08728 CRT10: CRT10; InterP 66.4 62 0.0013 39.4 12.4 109 109-219 102-245 (717)
450 PF11715 Nup160: Nucleoporin N 65.8 21 0.00046 41.7 8.5 73 117-189 156-257 (547)
451 PRK13684 Ycf48-like protein; P 65.8 1.6E+02 0.0035 32.4 14.9 109 106-218 213-329 (334)
452 PHA03098 kelch-like protein; P 64.5 96 0.0021 36.1 13.6 138 80-223 342-514 (534)
453 PHA02713 hypothetical protein; 64.2 1E+02 0.0022 36.5 13.8 138 80-224 351-537 (557)
454 TIGR02171 Fb_sc_TIGR02171 Fibr 64.1 61 0.0013 40.3 11.9 88 163-252 320-415 (912)
455 COG4590 ABC-type uncharacteriz 62.8 44 0.00095 38.4 9.6 106 118-224 279-390 (733)
456 PF12768 Rax2: Cortical protei 62.0 2E+02 0.0044 31.1 14.4 114 129-245 16-146 (281)
457 COG1520 FOG: WD40-like repeat 62.0 1.8E+02 0.0038 32.2 14.5 109 79-190 66-181 (370)
458 PF10168 Nup88: Nuclear pore c 61.7 62 0.0013 39.6 11.5 74 108-182 85-181 (717)
459 KOG2247 WD40 repeat-containing 61.4 1.3 2.9E-05 50.5 -2.4 131 79-211 44-179 (615)
460 COG5167 VID27 Protein involved 60.8 79 0.0017 36.9 11.2 132 86-221 485-633 (776)
461 KOG4441 Proteins containing BT 60.7 3.5E+02 0.0077 32.2 17.9 103 118-224 284-408 (571)
462 PF14655 RAB3GAP2_N: Rab3 GTPa 60.4 1E+02 0.0022 35.3 12.3 89 112-201 6-118 (415)
463 PF11715 Nup160: Nucleoporin N 59.8 67 0.0014 37.6 11.2 41 108-148 215-259 (547)
464 TIGR03118 PEPCTERM_chp_1 conse 58.8 2E+02 0.0043 31.8 13.3 112 109-221 24-171 (336)
465 PRK13615 lipoprotein LpqB; Pro 58.1 2.5E+02 0.0055 33.4 15.4 138 111-253 337-487 (557)
466 PF07676 PD40: WD40-like Beta 57.6 34 0.00074 24.8 5.4 22 189-210 6-27 (39)
467 PF10168 Nup88: Nuclear pore c 56.4 1.1E+02 0.0024 37.4 12.5 72 150-223 85-182 (717)
468 PF12768 Rax2: Cortical protei 56.3 1.8E+02 0.0039 31.5 12.8 109 90-199 15-144 (281)
469 PF07250 Glyoxal_oxid_N: Glyox 54.7 75 0.0016 33.7 9.4 128 131-260 48-197 (243)
470 PF12657 TFIIIC_delta: Transcr 54.7 72 0.0016 31.6 8.9 31 151-181 87-122 (173)
471 PF05935 Arylsulfotrans: Aryls 54.3 4E+02 0.0088 30.9 18.1 107 113-224 153-305 (477)
472 COG1520 FOG: WD40-like repeat 53.6 1.2E+02 0.0025 33.6 11.3 71 120-192 69-141 (370)
473 PF05096 Glu_cyclase_2: Glutam 53.4 3.2E+02 0.0069 29.4 17.8 118 89-210 108-249 (264)
474 KOG1916 Nuclear protein, conta 52.8 7.2 0.00016 47.6 1.6 68 111-180 184-265 (1283)
475 COG5290 IkappaB kinase complex 49.0 74 0.0016 38.9 8.9 92 153-248 250-349 (1243)
476 PF14761 HPS3_N: Hermansky-Pud 48.7 66 0.0014 33.5 7.6 48 204-253 29-77 (215)
477 PF14269 Arylsulfotran_2: Aryl 47.1 4.1E+02 0.0089 28.9 15.7 70 110-180 146-220 (299)
478 KOG4460 Nuclear pore complex, 44.6 3.6E+02 0.0078 31.9 13.1 74 151-225 105-203 (741)
479 PRK13615 lipoprotein LpqB; Pro 41.5 2.9E+02 0.0063 32.9 12.4 98 153-255 337-436 (557)
480 COG4257 Vgb Streptogramin lyas 40.8 1.4E+02 0.003 32.6 8.6 100 152-252 64-164 (353)
481 PF03022 MRJP: Major royal jel 40.3 3.7E+02 0.008 29.0 12.2 123 130-252 35-202 (287)
482 COG1506 DAP2 Dipeptidyl aminop 38.3 7.8E+02 0.017 29.5 15.8 59 145-208 55-117 (620)
483 PF01731 Arylesterase: Arylest 38.2 1.5E+02 0.0032 26.4 7.2 48 172-221 36-85 (86)
484 TIGR02171 Fb_sc_TIGR02171 Fibr 38.1 3.5E+02 0.0076 34.0 12.6 123 212-358 329-451 (912)
485 PF02333 Phytase: Phytase; In 37.9 6.5E+02 0.014 28.6 19.6 171 83-254 70-278 (381)
486 smart00564 PQQ beta-propeller 37.8 69 0.0015 22.1 4.2 25 121-145 8-32 (33)
487 PF04651 Pox_A12: Poxvirus A12 37.4 22 0.00047 35.7 2.0 22 684-705 115-137 (189)
488 KOG1898 Splicing factor 3b, su 37.2 7.6E+02 0.016 31.7 15.0 150 93-248 855-1032(1205)
489 PF07676 PD40: WD40-like Beta 36.0 1.1E+02 0.0024 22.1 5.2 33 145-177 4-38 (39)
490 PHA02790 Kelch-like protein; P 34.9 7.7E+02 0.017 28.5 16.7 124 92-223 288-426 (480)
491 PRK13614 lipoprotein LpqB; Pro 34.5 8.2E+02 0.018 29.3 14.7 140 109-254 344-504 (573)
492 PF07932 DAP_C: D-aminopeptida 34.5 14 0.00031 33.2 0.2 33 673-706 12-49 (97)
493 smart00036 CNH Domain found in 34.4 5.3E+02 0.011 27.9 12.4 108 111-221 5-132 (302)
494 PHA02790 Kelch-like protein; P 34.3 7.8E+02 0.017 28.4 15.2 135 80-223 318-473 (480)
495 PF08954 DUF1900: Domain of un 34.0 9.7 0.00021 36.7 -1.0 41 352-398 29-69 (136)
496 PF07250 Glyoxal_oxid_N: Glyox 34.0 88 0.0019 33.2 6.0 82 174-256 48-138 (243)
497 PF10584 Proteasome_A_N: Prote 33.4 16 0.00035 24.6 0.3 9 572-580 7-15 (23)
498 KOG3616 Selective LIM binding 32.8 5.4E+02 0.012 31.8 12.4 109 106-219 13-125 (1636)
499 PF03022 MRJP: Major royal jel 32.0 6.8E+02 0.015 27.0 18.7 167 90-258 44-258 (287)
500 PLN02153 epithiospecifier prot 31.6 7E+02 0.015 27.1 15.6 65 118-186 137-231 (341)
No 1
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.96 E-value=2e-28 Score=258.89 Aligned_cols=308 Identities=17% Similarity=0.234 Sum_probs=243.3
Q ss_pred CCCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 004785 29 NHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPR 108 (730)
Q Consensus 29 ~~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~ 108 (730)
-+|+||||++|++..++|.||+++++++..||..+.+.+..|.++...+..+|-.++ ..-.++...|..+..+.||++
T Consensus 5 ~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~V--iPl~k~Gr~d~~~P~v~GHt~ 82 (472)
T KOG0303|consen 5 VVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLV--IPLVKTGRMDASYPLVCGHTA 82 (472)
T ss_pred hhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceee--cccccccccCCCCCCccCccc
Confidence 378999999999999999999999999999999998888888666665543433333 334445555666778899999
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 109 ~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
.|..++|+| +...||+||+|.+|+||.+-.+ +++..|.+|...|.-|+|||.-.+.|++++.|.+|.+||+.
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence 999999999 7889999999999999998553 45778899999999999999888999999999999999999
Q ss_pred CCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCC-CeEEEEEccCCCeEEEEEeeCC
Q 004785 181 TAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRR-SLRAVHFHPHAAPLLLTAEVND 258 (730)
Q Consensus 181 tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~-~V~sVaFSPdG~~Llatgsvwd 258 (730)
+|+.+..+.|.+-|.++.|+-||.+|++.+.++ |+|||.++++.+. ....|.+ .-..+.|-.+|. +++|+
T Consensus 163 tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k~~Raifl~~g~-i~tTG---- 234 (472)
T KOG0303|consen 163 TGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAKPARAIFLASGK-IFTTG---- 234 (472)
T ss_pred CCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCCcceeEEeccCc-eeeec----
Confidence 999999999999999999999999999999555 9999999998765 2234433 334556777887 55543
Q ss_pred ccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCC
Q 004785 259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS 338 (730)
Q Consensus 259 l~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~s 338 (730)
+.+.....+.+|+...-... +....-+.+..++.|-|.+|.+.|++
T Consensus 235 ---------------fsr~seRq~aLwdp~nl~eP-~~~~elDtSnGvl~PFyD~dt~ivYl------------------ 280 (472)
T KOG0303|consen 235 ---------------FSRMSERQIALWDPNNLEEP-IALQELDTSNGVLLPFYDPDTSIVYL------------------ 280 (472)
T ss_pred ---------------cccccccceeccCcccccCc-ceeEEeccCCceEEeeecCCCCEEEE------------------
Confidence 22233345666663322222 33334445556666777777766665
Q ss_pred CcceeeecccCCCCCccceeccCCCCCCCCCCCCCCccccccccccCCchhhcccccccc
Q 004785 339 SSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD 398 (730)
Q Consensus 339 s~~~~l~~~~~~~~q~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (730)
-++.+..| +||+..++.++.||++.|.+..||++++.||..-
T Consensus 281 ------------~GKGD~~I------RYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 281 ------------CGKGDSSI------RYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred ------------EecCCcce------EEEEecCCCceeEEecccccCCcccccccccccc
Confidence 24555566 8999999999999999999999999999999765
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=246.27 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=173.0
Q ss_pred cCCCCccceeeeccCcceeecCCCCeEEEE--------------EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004785 47 VAPRTKHSSKRLLGETARKCSGSFSQIFEA--------------GRDARRGLASWVEAESLHHLRPKYC----PLSPPPR 108 (730)
Q Consensus 47 is~~~~~~~k~~wd~~~~~~s~s~s~ll~a--------------~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~ 108 (730)
++.+....+...|+.....|+......+.. ..+.+..+++++.||++++|+..+. .|.+|..
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~ 262 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA 262 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence 445556666666666666665322111111 1124679999999999999999874 6899999
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l 188 (730)
.|..++|+|+|++|+|++.|.+-++||++++..+....||...|.+++|++ +|.+++||+.|..-+|||+++|+++..+
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEe
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999887
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 189 D-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 189 ~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
. |..+|.+|+|+|+|..||+|+. +.++|||++....+. .+..|.+-|+.|.|+|+..+++++++
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcc
Confidence 5 9999999999999999999995 559999999988744 78899999999999995555555554
No 3
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=5.7e-23 Score=233.81 Aligned_cols=271 Identities=18% Similarity=0.192 Sum_probs=195.0
Q ss_pred CCCcceecccccccccCCCCccceeeecc-CcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-------CC
Q 004785 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-------PL 103 (730)
Q Consensus 32 sSk~r~If~~~~krEis~~~~~~~k~~wd-~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L 103 (730)
.||||++|+...++|.+|.+++.....|+ .+...++..+.... +...++. ..++..+.+ .+
T Consensus 3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~-w~~~gg~----------~v~~~~~~G~~~~~~~~l 71 (493)
T PTZ00421 3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVP-WQQLGST----------AVLKHTDYGKLASNPPIL 71 (493)
T ss_pred cccccccccccCCcccceeccccccccCCCCCcEeECCceEEEE-EecCCce----------EEeeccccccCCCCCceE
Confidence 58999999999999999999999999998 55655664443332 2111221 122222222 36
Q ss_pred CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEE
Q 004785 104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVR 175 (730)
Q Consensus 104 ~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVr 175 (730)
.+|.+.|++++|+| ++++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|.+.++|++++.|++|+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 78999999999999 8999999999999999999765 356788999999999999995568999999999999
Q ss_pred EEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCC-eEEEEEccCCCeEEE
Q 004785 176 LWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLL 252 (730)
Q Consensus 176 LWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~-V~sVaFSPdG~~Lla 252 (730)
|||+.+++.+..+. |...|.+++|+|+|++|++++.+ .|+|||+++++... .+..|... +..+.|.+++..+++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEE
Confidence 99999998887765 88899999999999999999954 59999999887543 45566543 457789999887776
Q ss_pred EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccc
Q 004785 253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT 332 (730)
Q Consensus 253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~ 332 (730)
++.... ....+.+||....... +...........+.+.|++|++.+++....+ ....
T Consensus 229 ~G~s~s-------------------~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD---g~Ir 285 (493)
T PTZ00421 229 LGCSKS-------------------QQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSKGE---GNIR 285 (493)
T ss_pred EecCCC-------------------CCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEeCC---CeEE
Confidence 552100 0124666665433221 1111111223445788999999888743211 1344
Q ss_pred eeecCCC
Q 004785 333 QQSLRSS 339 (730)
Q Consensus 333 ~~~~~ss 339 (730)
.+++...
T Consensus 286 iwdl~~~ 292 (493)
T PTZ00421 286 CFELMNE 292 (493)
T ss_pred EEEeeCC
Confidence 5555443
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.3e-25 Score=234.12 Aligned_cols=239 Identities=20% Similarity=0.224 Sum_probs=194.9
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
...+.++..|++++-+|.+++|+...+ +|.+|...|.++.|+|. +..||+|+.||+|++|++.+...+..|.+|
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH 260 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH 260 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc
Confidence 334568899999999999999999876 58899999999999995 679999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS 226 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~ 226 (730)
...|..++||| +|++|+|++.|.+-++||+.+++.+.. -+|...|.+++|+|||.++++|+-|. -+|||++++..+.
T Consensus 261 ~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 261 LARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred hhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEE
Confidence 99999999999 999999999999999999999876655 46999999999999999999999555 8999999999765
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc---CC------------CCeEEEec
Q 004785 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---YP------------PPVICMAG 286 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~p------------~~~V~l~d 286 (730)
.+.+|...|.+|.|+|+|-.++++++ +||++......++..+...+. |. ...+.+|.
T Consensus 340 ---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 340 ---FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ---EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 78899999999999999998877554 888886666444333322211 11 12334444
Q ss_pred CCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 287 AHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 287 ~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
..+. .......+....++++.+++|+..|+-
T Consensus 417 ~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 417 TRTW---SPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred CCCc---ccchhhcCCccceEEEEeccCCceEEE
Confidence 3322 233344456667888889999988875
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=2.4e-24 Score=243.84 Aligned_cols=198 Identities=24% Similarity=0.344 Sum_probs=174.2
Q ss_pred ccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC
Q 004785 52 KHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG 127 (730)
Q Consensus 52 ~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~ 127 (730)
....+.+.++..-++..+| ....+.|+++++|.+||+|.+.+. .++||..+|.++.|+|.|-++||+|.
T Consensus 441 ~~~~~~L~GH~GPVyg~sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred CceeEEeecCCCceeeeee-------cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC
Confidence 3334445556555555333 347889999999999999999876 47899999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEE
Q 004785 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELL 206 (730)
Q Consensus 128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~L 206 (730)
|++.++|......+++.|.+|...|.|++||| +.+++++||.|.+|++||+.+|..++.+ +|.++|.+++|||+|++|
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 99999999999999999999999999999999 9999999999999999999999999986 599999999999999999
Q ss_pred EEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcc
Q 004785 207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD 260 (730)
Q Consensus 207 AsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~ 260 (730)
++|+.++ |.|||+..+..+. .+.+|.+.|.++.||.||..|++++. +||+.
T Consensus 593 aSg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9999655 9999999988655 67889999999999999997777665 55555
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.3e-23 Score=219.80 Aligned_cols=239 Identities=19% Similarity=0.267 Sum_probs=191.1
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEECCCCeE
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGSC 141 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSP-----DG~~LaSgS~DgtVrVWDl~tg~~ 141 (730)
.+.++-+.+++.|++|+.||+|++||.+++ .|.+|...|++++|-| ..++||+++.||+|+|||+..+.+
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC 239 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE
Confidence 455556678899999999999999999886 5889999999999976 677999999999999999999999
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEc-----------CCCC-----
Q 004785 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFH-----------ASGE----- 204 (730)
Q Consensus 142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafS-----------PdG~----- 204 (730)
+..+.+|+.+|+|+.|- +..++++++.|++|++|+...|.+...+ +|...|+.++.+ |.|+
T Consensus 240 ~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999994 4789999999999999999999988776 488888888765 4444
Q ss_pred --------------------EEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004785 205 --------------------LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND 258 (730)
Q Consensus 205 --------------------~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwd 258 (730)
.|++|+|+. +.+|+-...+. ......+|..-|+.+.||||++++++++- +|+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 499999776 99999766553 33467899999999999999998776543 777
Q ss_pred ccCCCcceeEeccCCcccC-----------------CCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 259 LDSSESSLTLATSPGYWRY-----------------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 259 l~s~~~~~~l~t~sG~~~~-----------------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
.++++....++ ||+.. ....+.+|+..+ ..+..+.++..-.++.+.++|||.+++-
T Consensus 396 g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---kKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 396 GRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---KKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred CCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeee---eeecccCCCCCceEEEEEecCCCceeec
Confidence 77666655444 44331 123445555443 2445566666667888999999999985
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=8.5e-23 Score=208.87 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=188.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785 79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
.+...+.+++.|+++.+|++... .+.||...|..+..++||++.++++.|+++++||+.+|+..+.|.+|.
T Consensus 26 ~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 26 KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence 46788999999999999998642 588999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--CCCeEEEEEcCC--CCEEEEEECCe-EEEEEcCCCcc
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h--~~~V~sVafSPd--G~~LAsgSdd~-I~VWDl~t~~~ 224 (730)
..|.+++|++ +...+++|+.|++|++||+........... .+.|.++.|+|+ ..+|++++.|+ |++||+++.+.
T Consensus 106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 9999999999 999999999999999999976544444333 789999999998 56888888555 99999999876
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC----------ccc--CCCCeEEEecC
Q 004785 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG----------YWR--YPPPVICMAGA 287 (730)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG----------~~~--~p~~~V~l~d~ 287 (730)
.. .+.+|...++.+.+||||..++.+++ .||++.++....+....- |.- ...+.|.+|+.
T Consensus 185 ~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 185 RT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred hh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence 44 78899999999999999995555444 899987777544432211 111 01355788887
Q ss_pred CCCCCCCcc-cccCC-----CCCCceeeeEecCCCEEEEE
Q 004785 288 HSSSHPGLA-EEVPL-----ITPPFLRPSFVRDDERISLQ 321 (730)
Q Consensus 288 ~s~d~~~L~-~~~~~-----~slpil~p~FSpDg~rI~~~ 321 (730)
.+.....-. .+..+ ....+++.+||.||..+..+
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence 765542211 11111 13446689999999998873
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=2.3e-23 Score=236.00 Aligned_cols=222 Identities=21% Similarity=0.280 Sum_probs=186.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCC-----------------------------------CCCCCCCCCeEEEEE
Q 004785 71 SQIFEAGRDARRGLASWVEAESLHHLRPKY-----------------------------------CPLSPPPRSTIAAAF 115 (730)
Q Consensus 71 s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t-----------------------------------~~L~gH~~~Vt~laf 115 (730)
.......+++...|+.|..|..|++|.+.. .++.||.++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 344455677888999999999999998762 026699999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCe
Q 004785 116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPI 194 (730)
Q Consensus 116 SPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V 194 (730)
+|+.++|+++|+|++||+|.+.+..++..++||..+|+.+.|+| .+.+|+|++.|++.++|......+.+.+ +|...|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV 538 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV 538 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhccccccc
Confidence 99999999999999999999999999999999999999999999 9999999999999999999988888876 589999
Q ss_pred EEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCC
Q 004785 195 ASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPG 273 (730)
Q Consensus 195 ~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG 273 (730)
.|+.|||+..++++||.++ |++||+.++..++ .+.+|..+|.+|+|||+|++|++++...
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~---------------- 599 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDG---------------- 599 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCC----------------
Confidence 9999999999999999665 9999999998755 8899999999999999999888776521
Q ss_pred cccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785 274 YWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH 322 (730)
Q Consensus 274 ~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~ 322 (730)
.|.+||+..+.......+ .+.-+.+..||+||..++...
T Consensus 600 -------~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 600 -------LIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred -------cEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEEEecC
Confidence 344444444333222222 233445789999999999733
No 9
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=1.2e-21 Score=225.13 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=168.1
Q ss_pred CCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004785 33 SRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPR 108 (730)
Q Consensus 33 Sk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~ 108 (730)
++|||+|+...+.. |.+++.....|+.....++..+....... . .|+.++.|++|+.... .+.+|.+
T Consensus 5 ~~~~~~~~~~~~~~--y~diri~~~~~~s~~ia~n~~~~A~~w~~-~------gGG~~gvI~L~~~~r~~~v~~L~gH~~ 75 (568)
T PTZ00420 5 PLIKNLYPDPSNNL--FDDLRICSRVIDSCGIACSSGFVAVPWEV-E------GGGLIGAIRLENQMRKPPVIKLKGHTS 75 (568)
T ss_pred chhhhcCCchhhCe--eccEEccccccCceeEeeCCCeEEEEEEc-C------CCCceeEEEeeecCCCceEEEEcCCCC
Confidence 89999999966544 88899988889888877765553332221 1 2445778999987543 4789999
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785 109 STIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS--------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 109 ~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~--------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (730)
.|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|++..++++++.|++|+|||+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 9999999996 7899999999999999997642 345678999999999999944456789999999999999
Q ss_pred CCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEE-----EEEccCCCeEEEE
Q 004785 180 STAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRA-----VHFHPHAAPLLLT 253 (730)
Q Consensus 180 ~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~s-----VaFSPdG~~Llat 253 (730)
++++.+..+.+...|.+++|+|+|++|++++ ++.|+|||+++++... .+..|...+.. ..|++++.+++++
T Consensus 156 ~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 156 ENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred CCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 9998877777788999999999999999988 4559999999987543 56677765433 3456888888877
Q ss_pred Ee
Q 004785 254 AE 255 (730)
Q Consensus 254 gs 255 (730)
+.
T Consensus 233 G~ 234 (568)
T PTZ00420 233 GF 234 (568)
T ss_pred Ec
Confidence 63
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-22 Score=210.68 Aligned_cols=169 Identities=18% Similarity=0.283 Sum_probs=147.1
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EEEe
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLH 146 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~ 146 (730)
.+.......+..|++|+.|.++|+||+.+. +.++|..-|.|++|+|||+.||+|+.||+|++||.++|+++ +.|.
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc
Confidence 334444558899999999999999999886 47899999999999999999999999999999999998765 7899
Q ss_pred cCCCCcEEEEEccC----CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcC
Q 004785 147 GHRRTPWVVRFHPL----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYN 220 (730)
Q Consensus 147 gH~~~V~sVafSP~----dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~ 220 (730)
+|+..|++++|.|. ..+++++++.||+|+|||+..++++..+ +|..+|+|+.|--+| +|++|+.+ +|++|+..
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL 276 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence 99999999999873 3568999999999999999999988775 699999999996443 78899854 59999999
Q ss_pred CCccccCCeEEecCCCCeEEEEEc
Q 004785 221 MREETSSPRIVLRTRRSLRAVHFH 244 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFS 244 (730)
.+...+ .+.+|...|+.++.+
T Consensus 277 dG~~~r---~lkGHahwvN~lals 297 (480)
T KOG0271|consen 277 DGKLCR---ELKGHAHWVNHLALS 297 (480)
T ss_pred chhHHH---hhcccchheeeeecc
Confidence 887644 788999999988877
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=4.8e-22 Score=203.37 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=158.8
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCC
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRT 151 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~~~ 151 (730)
...++...++++.|+++++||+.++ +|.+|...|.+++|++|.+.|++|+.|.+|++||+........... |++.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 3457889999999999999999875 5899999999999999999999999999999999875544333333 3789
Q ss_pred cEEEEEccCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCC
Q 004785 152 PWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP 228 (730)
Q Consensus 152 V~sVafSP~d-g~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~ 228 (730)
|.|+.|+|.. .-+|++++.|++|++||+++-+.... .+|.+.++.+++||||.++++|+. +.+.+||++.++..
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l--- 227 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL--- 227 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee---
Confidence 9999999943 66899999999999999998887766 469999999999999999999994 55999999998763
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEE----eeCCccCCCcceeE
Q 004785 229 RIVLRTRRSLRAVHFHPHAAPLLLTA----EVNDLDSSESSLTL 268 (730)
Q Consensus 229 ~~l~~h~~~V~sVaFSPdG~~Llatg----svwdl~s~~~~~~l 268 (730)
...+|...|.+++|+|+.-.|++.. .+|++........+
T Consensus 228 -ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 228 -YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred -EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 4778999999999999987766543 39998876665433
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=219.16 Aligned_cols=197 Identities=28% Similarity=0.402 Sum_probs=166.9
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC------CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEec
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPK------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKVLHG 147 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~------t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~~l~g 147 (730)
......+..+++++.++.+++|+.. ...+.+|...|.+++|+||+++|++++.|++|+|||+ ..+..++++++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 4455678889999999999999983 3346799999999999999999999999999999999 56689999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccc
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREET 225 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~ 225 (730)
|...|++++|+| .++++++|+.|++|+|||+++++++..+. |.+.|.+++|+++|++|++++. +.|+|||+.++...
T Consensus 245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 999999999999 66999999999999999999999998875 8889999999999999999984 45999999998732
Q ss_pred cCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785 226 SSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG 273 (730)
Q Consensus 226 ~~~~~l~~h~~--~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG 273 (730)
....+..+.. .++.+.|+|+++++++... +|++........+..+..
T Consensus 324 -~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 324 -CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred -eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 0113444433 5999999999999988665 788887766665554443
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.89 E-value=3.8e-21 Score=197.85 Aligned_cols=221 Identities=18% Similarity=0.179 Sum_probs=176.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (730)
....+..++.|+-|+...+|++.+. .|.+|.+.+.|+.|-.| ..|+++|.|.++.+||+++|+.+..|.
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec
Confidence 4567888888888888888887743 37899999999999874 578899999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~ 224 (730)
+|.+.|.+++++|.+++.+++|+-|++.+|||++.+.+++.|. |...|++++|.|+|.-+++|+|+. .++||++...+
T Consensus 184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 9999999999999899999999999999999999999999975 999999999999999999999776 99999999876
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCccccc
Q 004785 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV 299 (730)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~ 299 (730)
+. ......-...|++++||..|++|+++.. +||.-.++....|.++.+++. .+.+ +++...+.++.
T Consensus 264 ~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS----cl~~----s~DG~av~TgS 334 (343)
T KOG0286|consen 264 LA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS----CLGV----SPDGMAVATGS 334 (343)
T ss_pred Ee-eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE----EEEE----CCCCcEEEecc
Confidence 54 1111122458999999999998887544 777666666666665444421 2222 44555555555
Q ss_pred CCCCCCce
Q 004785 300 PLITPPFL 307 (730)
Q Consensus 300 ~~~slpil 307 (730)
.+..+++|
T Consensus 335 WDs~lriW 342 (343)
T KOG0286|consen 335 WDSTLRIW 342 (343)
T ss_pred hhHheeec
Confidence 55444443
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=206.67 Aligned_cols=221 Identities=18% Similarity=0.249 Sum_probs=179.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (730)
...+..+.++..++|+..+|.|++|+.... .+.. |...|++++|||+...|+++|+|++|+|||....+.-..+.|
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G 220 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG 220 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence 444555678899999999999999998765 2344 448999999999999999999999999999999998899999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~ 225 (730)
|.-.|.+++||| ...++++++.|..|++||.++++++.++ .|+..|..+.|+|++++|++++.|. ++++|+++.+++
T Consensus 221 HgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 221 HGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 999999999999 9999999999999999999999999886 5899999999999999999999665 999999976654
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCC
Q 004785 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP 305 (730)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slp 305 (730)
. .+.+|...|+++.|+|-..-|++++..+. .+.+|... ....+...+......
T Consensus 300 ~---~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg----------------------svvh~~v~--~~~p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 300 F---TYRGHKKDVTSLTWHPLNESLFTSGGSDG----------------------SVVHWVVG--LEEPLGEIPPAHDGE 352 (464)
T ss_pred H---HhhcchhhheeeccccccccceeeccCCC----------------------ceEEEecc--ccccccCCCcccccc
Confidence 4 67889999999999998887887765211 12222211 122233334445556
Q ss_pred ceeeeEecCCCEEEE
Q 004785 306 FLRPSFVRDDERISL 320 (730)
Q Consensus 306 il~p~FSpDg~rI~~ 320 (730)
+|+..|-|=|-.++-
T Consensus 353 iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 353 IWSLAYHPLGHILAT 367 (464)
T ss_pred eeeeeccccceeEee
Confidence 777888887766664
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=2.2e-20 Score=210.17 Aligned_cols=236 Identities=19% Similarity=0.242 Sum_probs=184.2
Q ss_pred ecCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 78 RDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 78 ~d~g~~L~Sgs~-DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
...|..|+-++. -|.+.+|+-.+. +..+|...++++++||||++||+|++|++|||||..+|-|+.+|..|+..|
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V 395 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV 395 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence 345777776654 468888987655 467999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC--CeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCC
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGELLAVASGHK--LYIWRYNMREETSSP 228 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~--~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~ 228 (730)
+.+.|+. .++.+++.+.||+|+.||+...+..+++.... ...+++.+|.|.++..|+-+. |+||++++++.+.
T Consensus 396 t~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD-- 472 (893)
T KOG0291|consen 396 TAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD-- 472 (893)
T ss_pred EEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee--
Confidence 9999999 99999999999999999999999988876554 567888899999999998665 9999999999766
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCcee
Q 004785 229 RIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR 308 (730)
Q Consensus 229 ~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ 308 (730)
.+.+|.++|.+++|+|+|..|++++ ||- .|.+|+.-...... ++-......+.
T Consensus 473 -iLsGHEgPVs~l~f~~~~~~LaS~S--WDk---------------------TVRiW~if~s~~~v---Etl~i~sdvl~ 525 (893)
T KOG0291|consen 473 -ILSGHEGPVSGLSFSPDGSLLASGS--WDK---------------------TVRIWDIFSSSGTV---ETLEIRSDVLA 525 (893)
T ss_pred -hhcCCCCcceeeEEccccCeEEecc--ccc---------------------eEEEEEeeccCcee---eeEeeccceeE
Confidence 8899999999999999999555433 321 23344332221111 11112334667
Q ss_pred eeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCCCCccceecc
Q 004785 309 PSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP 360 (730)
Q Consensus 309 p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~~q~~~~v~p 360 (730)
+.|+|||+.|++...+ .++++|+.....+-..|+-
T Consensus 526 vsfrPdG~elaVaTld-----------------gqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLD-----------------GQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EEEcCCCCeEEEEEec-----------------ceEEEEEhhhceeeccccc
Confidence 9999999999983221 2577777765555555543
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.86 E-value=2.7e-20 Score=188.07 Aligned_cols=235 Identities=15% Similarity=0.211 Sum_probs=182.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCcE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~~~V~ 153 (730)
....|++.+.|.+||+|.+.++ ++......|+.+.+.||++.||++++. .|++||+++++ ++..|.+|++.|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 4568899999999999999987 355566779999999999999999875 79999999875 5899999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEe
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL 232 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~ 232 (730)
+|.|.- +++.+++|+.||+++|||++...+.+.+.+..+|+++..+|+...|++|.. +.|+|||+....... ..+.
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 999999 999999999999999999999888889999999999999999999999984 559999998775432 3344
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcc------eeEeccCCccc---C-----------CCCeEEEecC
Q 004785 233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS------LTLATSPGYWR---Y-----------PPPVICMAGA 287 (730)
Q Consensus 233 ~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~------~~l~t~sG~~~---~-----------p~~~V~l~d~ 287 (730)
.....|.++...|||+++++..+ +|++-..... ..+..+++|.- + ....+++|+.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 55678999999999998777544 8877654443 23344444432 1 1233445553
Q ss_pred CCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 288 ~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
..- ..+.....+..--.|.+.||.||++|+-
T Consensus 245 ~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 245 DDF--FKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred CCc--eeeEEEeecCCceEEeeeeccCccEEEe
Confidence 222 2222222223334557999999999996
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.86 E-value=3.5e-20 Score=200.11 Aligned_cols=211 Identities=15% Similarity=0.235 Sum_probs=170.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------------
Q 004785 79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--------------- 140 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~--------------- 140 (730)
..|..|++|+.||.+++|+.... .|..|+++|.++.|+.+|.+|++++-|+++.+||..+|.
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence 46889999999999999998765 588999999999999999999999999999999995542
Q ss_pred --------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCC
Q 004785 141 --------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRP 193 (730)
Q Consensus 141 --------------------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~ 193 (730)
++.++.+|.+.|.++.|+| .+.+|+++|.|++++||......+...+ .|...
T Consensus 325 dW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 325 DWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE 403 (524)
T ss_pred EEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence 3445668999999999999 9999999999999999999888877765 48899
Q ss_pred eEEEEEcCCC---------CEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCC
Q 004785 194 IASIAFHASG---------ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE 263 (730)
Q Consensus 194 V~sVafSPdG---------~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~ 263 (730)
|+.+.|+|+| ..|++++ +..|++||+..+..+. .+..|..+|++|+|+|+|++++++.- +
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH~~pVysvafS~~g~ylAsGs~-d------ 473 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVAFSPNGRYLASGSL-D------ 473 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccCCCceEEEEecCCCcEEEecCC-C------
Confidence 9999999975 3566665 6669999999998654 67899999999999999997765431 1
Q ss_pred cceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 264 SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 264 ~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
..|.+|++..+...+...+. -.++.++|+-+|..|.+
T Consensus 474 ----------------g~V~iws~~~~~l~~s~~~~----~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 474 ----------------GCVHIWSTKTGKLVKSYQGT----GGIFELCWNAAGDKLGA 510 (524)
T ss_pred ----------------CeeEeccccchheeEeecCC----CeEEEEEEcCCCCEEEE
Confidence 24455554444444433331 22567888888888876
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=192.35 Aligned_cols=166 Identities=20% Similarity=0.317 Sum_probs=153.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
...|++++-|.+.-+||++++ .+.+|.+.|.+++++| +++.+++|+-|+..+|||++.+.+++.|.+|...|++|
T Consensus 156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV 235 (343)
T ss_pred CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence 678999999999999999988 4789999999999999 99999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l 231 (730)
+|.| ++.-|++|+.|+++++||++..+.+..+.+. .+|++++||-.|++|+.|.++. +.+||.-+++... .+
T Consensus 236 ~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg---~L 311 (343)
T KOG0286|consen 236 RFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG---VL 311 (343)
T ss_pred EEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE---Ee
Confidence 9999 9999999999999999999999999888755 4899999999999999988554 9999998887644 78
Q ss_pred ecCCCCeEEEEEccCCCeE
Q 004785 232 LRTRRSLRAVHFHPHAAPL 250 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~L 250 (730)
.+|...|.++..+|||.-+
T Consensus 312 ~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred eccCCeeEEEEECCCCcEE
Confidence 8999999999999999733
No 19
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.7e-20 Score=199.43 Aligned_cols=220 Identities=22% Similarity=0.294 Sum_probs=180.5
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
.+.+|..++.|.+.|.|+++|.++. .+.+|+.+|..+.|+| |+..|++|++|+.+++||+.+......+.+|++.
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 4568899999999999999997663 5789999999999999 6678889999999999999999876788999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~ 230 (730)
|.+.+|+|.++.+++||+.||+|++||++.. ..+..+.|..+|.++.|-|.|..++++++..|+|||+-++.... ..
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll--~~ 233 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL--TS 233 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh--hh
Confidence 9999999977889999999999999999987 77888999999999999999999999999999999998776522 34
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeee
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS 310 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~ 310 (730)
...|...|+|+.+..++..|++++=+..++ ....+.| ..+.-| .++.|+++.+
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK-------Vfd~t~~-----Kvv~s~---------------~~~~pvLsia 286 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVK-------VFDTTNY-----KVVHSW---------------KYPGPVLSIA 286 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceE-------EEEccce-----EEEEee---------------ecccceeeEE
Confidence 455999999999999998777665322221 1111122 122222 2566888999
Q ss_pred EecCCCEEEEEecCC
Q 004785 311 FVRDDERISLQHTEH 325 (730)
Q Consensus 311 FSpDg~rI~~~~~~~ 325 (730)
.+||+..++++..+.
T Consensus 287 vs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 287 VSPDDQTVVIGMSNG 301 (487)
T ss_pred ecCCCceEEEecccc
Confidence 999999999855443
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.85 E-value=4.9e-20 Score=190.24 Aligned_cols=195 Identities=16% Similarity=0.189 Sum_probs=170.1
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
...+..+++++.|..|.+|+.... ++++|++.|..+.|.+|++.|++++.|.+|+.||+++|++++.+++|..-|
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~v 135 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFV 135 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccccee
Confidence 347899999999999999996532 689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEE
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV 231 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l 231 (730)
+.+.-+..+..++.|++.|++++|||+++..+++++..+..++++.|..++..+.+|+ |+.|++||++...... .+
T Consensus 136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~l 212 (338)
T KOG0265|consen 136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TL 212 (338)
T ss_pred eecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---Ee
Confidence 9998665566788999999999999999999999999999999999999999999998 6779999999887644 88
Q ss_pred ecCCCCeEEEEEccCCCeEEEEE-----eeCCccCCCccee-EeccCCcc
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLT-LATSPGYW 275 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatg-----svwdl~s~~~~~~-l~t~sG~~ 275 (730)
.+|.+.|+.+..+++|.++++-+ .+|+++....... +..+.|+.
T Consensus 213 sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 99999999999999999888743 4888885544332 44444443
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=6e-20 Score=192.83 Aligned_cols=183 Identities=17% Similarity=0.281 Sum_probs=161.5
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
..++.......+++++.|++|++||+.+++ |.||-..|..+++|+--.+|++++.|+.|+-||++..+.++.+.||
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence 344455567889999999999999999984 6799999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
-..|++++.+| .-+.+++|+.|.++++||+++...+..+. |...|.++.+.|-...+++|+ |.+|++||++.++...
T Consensus 235 lS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 235 LSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred cceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 99999999999 99999999999999999999998888865 999999999999888889998 5569999999988644
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~ 260 (730)
.+..|...|++++.+|.-..+ ++++-+++.
T Consensus 314 ---tlt~hkksvral~lhP~e~~f-ASas~dnik 343 (460)
T KOG0285|consen 314 ---TLTHHKKSVRALCLHPKENLF-ASASPDNIK 343 (460)
T ss_pred ---eeecccceeeEEecCCchhhh-hccCCccce
Confidence 778899999999999988744 444433333
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.85 E-value=1.5e-18 Score=173.95 Aligned_cols=182 Identities=24% Similarity=0.397 Sum_probs=157.4
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
...+..|++++.++.|++|+.... .+..|...+..+.|++++++|++++.|+.|++||+.+++.+..+..|...+.
T Consensus 18 ~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~ 97 (289)
T cd00200 18 SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97 (289)
T ss_pred cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE
Confidence 345688999999999999998865 4678999999999999999999999999999999999888899999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEE
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV 231 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l 231 (730)
++.|++ ++.++++++.|+.|++||+.+++....+. |...+.++.|+|++++|++++ ++.|++||++..+... .+
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~ 173 (289)
T cd00200 98 SVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---TL 173 (289)
T ss_pred EEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce---eE
Confidence 999999 78888888889999999999888877765 778999999999999999998 6679999998776533 55
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~ 263 (730)
..|...+.++.|+|+++.+++++. +|++....
T Consensus 174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 678889999999999988877764 66665433
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=9.9e-20 Score=206.06 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=150.5
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
.+...++..+++++.|++|++||+... .+++|...|++++|+|+|+++++|+.|++|+|||+++++++..+++|.
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 334557779999999999999999432 588999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe--EEEEec-CCC--CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSRD-FYR--PIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~i~~l~-h~~--~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~ 223 (730)
+.|++++|++ +++++++++.|+.|+|||+.++. +...+. +.. .++++.|+|+|++|++++.++ +++||+..+.
T Consensus 289 ~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 289 DGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred CceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 9999999999 99999999999999999999998 444433 322 589999999999999999774 9999999887
Q ss_pred cccCCeEEecCCC---CeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~---~V~sVaFSPdG~~Llatgs 255 (730)
... ....|.. .+.+..+++.+++++++..
T Consensus 368 ~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 368 SVG---TYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred cee---eecccCCcceeEecccccCCCCeEEEEeC
Confidence 644 5556655 3445566778887776654
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5e-20 Score=194.03 Aligned_cols=194 Identities=26% Similarity=0.370 Sum_probs=172.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
....|+.|++++.|-.+++||..++ .+.+|...|.++.|-|.|.+|++++.|.+|+.|++.+|.++++|.+|...
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh
Confidence 3447899999999999999999874 57899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCC---------------CCEEEEEECCe-E
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS---------------GELLAVASGHK-L 214 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPd---------------G~~LAsgSdd~-I 214 (730)
|..++.+. |+.++++++.|.+|++|-+.++++...+ .|...|.+++|-|. +.++.+++.|+ |
T Consensus 238 vr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 238 VRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred EEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 99999999 9999999999999999999999887765 58899999999873 25888998554 9
Q ss_pred EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY 274 (730)
Q Consensus 215 ~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~ 274 (730)
++||+.++..+ ..+.+|..+|+.++|+|.|+||++.+. +|++....+...+..+.++
T Consensus 317 k~wdv~tg~cL---~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 317 KIWDVSTGMCL---FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred EEEeccCCeEE---EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 99999999864 489999999999999999999998776 8888877777766655444
No 25
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.1e-19 Score=202.30 Aligned_cols=343 Identities=20% Similarity=0.201 Sum_probs=228.1
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~ 150 (730)
+..-...-.++||++|-+|++|+.++. +|.||.+.|..+.|++.-.+|+++|+|.+|+||+..+++++..+.||..
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 333446678889999999999998865 6899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe---------------------------EE--EEe-cCCCCeEEEEEc
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---------------------------CI--GSR-DFYRPIASIAFH 200 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~---------------------------~i--~~l-~h~~~V~sVafS 200 (730)
.|.|.+|+| ..++++|+|.|.+||+||+..-+ .+ ..+ +|...|+-++|+
T Consensus 137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 137 YVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred EEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 999999999 99999999999999999985311 01 112 488899999999
Q ss_pred CCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785 201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY 274 (730)
Q Consensus 201 PdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~ 274 (730)
|.-.++++|+|++ |++|.++..+... .....+|.+.|.++-|+|....+++.++ +||+.......++..-.++
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR 294 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR 294 (1202)
T ss_pred CCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe
Confidence 9999999999988 9999997665432 3456789999999999999998888776 8888877777666544443
Q ss_pred ccCC--CCeEE-EecCCCCCCCCcccccCCCCCCce---eeeEecCCCEEEEEecCCCCCcccceeec------------
Q 004785 275 WRYP--PPVIC-MAGAHSSSHPGLAEEVPLITPPFL---RPSFVRDDERISLQHTEHDSGATRTQQSL------------ 336 (730)
Q Consensus 275 ~~~p--~~~V~-l~d~~s~d~~~L~~~~~~~slpil---~p~FSpDg~rI~~~~~~~dsgs~~~~~~~------------ 336 (730)
.-.. -|.+. |+..+.+ ...+.......+.-+. ..-|.. +++|...-... ..+..+..+
T Consensus 295 FW~laahP~lNLfAAgHDs-Gm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t--~~d~~v~~lr~~g~~~~~~~s 370 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGHDS-GMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRT--QKDTAVASLRRPGTLWQPPRS 370 (1202)
T ss_pred EEEEEecCCcceeeeecCC-ceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccc--cccceeEeccCCCcccCCcce
Confidence 2100 00010 0100000 0000111001010111 122222 44444322111 111111111
Q ss_pred ---CCCcceeeecccCCCCCccceeccCCCCCCCCCCCCCCccccccccccCCchhhccc-ccccc----CCCCCCCCCC
Q 004785 337 ---RSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGA-VGTLD----GLPEERTNYL 408 (730)
Q Consensus 337 ---~ss~~~~l~~~~~~~~q~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~ 408 (730)
.......|-.++-++..++...-|-++....+..+......--.-|.+++..+.+++ +++-+ .|-+.++..+
T Consensus 371 msYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~ 450 (1202)
T KOG0292|consen 371 LSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLL 450 (1202)
T ss_pred eeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccC
Confidence 122233333334466666777667776655555665666666677899999999998 54443 3333344333
Q ss_pred C--------------CCCCCCcccccccc
Q 004785 409 P--------------SFGDQTNWELPFLQ 423 (730)
Q Consensus 409 ~--------------~~~~~~~~~~~~~~ 423 (730)
| ..+++++--|=++|
T Consensus 451 ~~~~~~IF~ag~g~lll~~~~~v~lfdvQ 479 (1202)
T KOG0292|consen 451 PESTDDIFYAGTGNLLLRSPDSVTLFDVQ 479 (1202)
T ss_pred cccccceeeccCccEEEEcCCeEEEEEee
Confidence 3 44556655555554
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.83 E-value=3.3e-19 Score=180.26 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=154.4
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
.....+++.|+.++ ...||+||+.+. .+.+|...|+++.|.-||+++++||+||++||||++...+-+.|+ |
T Consensus 46 LeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~ 123 (311)
T KOG0315|consen 46 LEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-H 123 (311)
T ss_pred EEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-C
Confidence 33444566666554 567999999876 478999999999999999999999999999999999977666665 7
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--------------------------------------------
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------------------------------------------- 184 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-------------------------------------------- 184 (730)
..+|++|..+| +...|++|..+|.|++||+.+..+
T Consensus 124 ~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 124 NSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA 202 (311)
T ss_pred CCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence 79999999999 888999999999999999976422
Q ss_pred -----EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785 185 -----IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (730)
Q Consensus 185 -----i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-- 255 (730)
+..+ .|.+.+..+.+|||+++||+++.++ ++||+.++. ......+.+|..++...+||.||+||+++++
T Consensus 203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 0011 2566788899999999999999655 999999877 2223567889999999999999999998776
Q ss_pred ---eCCccCCCcceeEeccCCccc
Q 004785 256 ---VNDLDSSESSLTLATSPGYWR 276 (730)
Q Consensus 256 ---vwdl~s~~~~~~l~t~sG~~~ 276 (730)
+|++..++.. ....||.+
T Consensus 281 ~~rlW~~~~~k~v---~qy~gh~K 301 (311)
T KOG0315|consen 281 TARLWDLSAGKEV---RQYQGHHK 301 (311)
T ss_pred ceeecccccCcee---eecCCccc
Confidence 7777755543 33455544
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=7.1e-19 Score=198.22 Aligned_cols=235 Identities=17% Similarity=0.198 Sum_probs=178.0
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (730)
....+-+.+|..+++|++|++|++||...+ ++..|+..|+.+.|+.+|+.|++.+-||+|+.||+..++..++|..
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 334445668899999999999999999884 7899999999999999999999999999999999999999999876
Q ss_pred CC-CCcEEEEEccCCCCEEEEEeCCC-cEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004785 148 HR-RTPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE 223 (730)
Q Consensus 148 H~-~~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~ 223 (730)
.. -...|++..| .+.++..|+.|. .|++|++++|+.+-.+ +|.++|.+++|+|+|..|+++|.| +|++||+-...
T Consensus 433 P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 433 PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence 54 3467899999 889998888876 5999999999999886 599999999999999999999954 59999996653
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccc
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE 298 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~ 298 (730)
... ....+...+..++|+|||+.++++.- +|+...... ..+..|........ .. ....+.
T Consensus 512 ~~v---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q---~~~IdgrkD~~~gR-~~--------~D~~ta 576 (893)
T KOG0291|consen 512 GTV---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ---VGSIDGRKDLSGGR-KE--------TDRITA 576 (893)
T ss_pred cee---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee---eccccchhhccccc-cc--------cceeeh
Confidence 322 35567788999999999998877654 455443222 22233332211110 00 011111
Q ss_pred cCC-CCCCceeeeEecCCCEEEEEe
Q 004785 299 VPL-ITPPFLRPSFVRDDERISLQH 322 (730)
Q Consensus 299 ~~~-~slpil~p~FSpDg~rI~~~~ 322 (730)
... ..-++-..+||+||..|+++.
T Consensus 577 ~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred hhcccCCceEEEEEcCCCCEEEecC
Confidence 111 122344799999999999733
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.6e-19 Score=188.71 Aligned_cols=174 Identities=17% Similarity=0.291 Sum_probs=157.2
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
...+..|.+++.|++|+.|+..++ ++.+|..-|..+..+.||.++|++++|.+|++|-+.++++...+++|..+|.
T Consensus 202 ~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 202 LPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred EecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 346799999999999999999987 6899999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC--------------CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEE
Q 004785 154 VVRFHPL--------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIW 217 (730)
Q Consensus 154 sVafSP~--------------dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VW 217 (730)
+++|.|. ++.++.+++.|++|++||+.++.++.++ +|...|..++|+|.|+||+++.|++ +++|
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 9999882 2368999999999999999999999886 5999999999999999999999777 9999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
|+++.+... .+..|..-|+++.|+.+-.++ ++|+
T Consensus 362 dl~~~~cmk---~~~ah~hfvt~lDfh~~~p~V-vTGs 395 (406)
T KOG0295|consen 362 DLKNLQCMK---TLEAHEHFVTSLDFHKTAPYV-VTGS 395 (406)
T ss_pred Eeccceeee---ccCCCcceeEEEecCCCCceE-Eecc
Confidence 999988755 566888999999999988854 4444
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.82 E-value=5.1e-19 Score=191.22 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=152.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCCCCCeEEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPPPRSTIAA 113 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~---------------------------------------------~L~gH~~~Vt~l 113 (730)
..+.+|++++.|+++.+||..++ ++.+|.+.|.++
T Consensus 286 k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 286 KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 45667899999999999998431 356899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC--------CCEEEEEeCCCcEEEEECCCCeEE
Q 004785 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN--------PTIIASGSLDHEVRLWNASTAECI 185 (730)
Q Consensus 114 afSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d--------g~lLaSgS~DgtVrLWDl~tg~~i 185 (730)
.|+|.|.+|+++|+|++++||+.........|.+|...|+.+.|+|.+ +..+++++.|++|++||+..+.++
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 999999999999999999999999999999999999999999999843 458999999999999999999999
Q ss_pred EEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 186 GSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 186 ~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..+ .|..+|++++|+|+|++||+|+ |+.|.+|+.++++..+ .......|..|+|+.+|.++.++.+
T Consensus 446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~----s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK----SYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE----eecCCCeEEEEEEcCCCCEEEEEec
Confidence 998 7999999999999999999999 5559999999987644 4455677999999999998777665
No 30
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=7.7e-18 Score=191.94 Aligned_cols=173 Identities=13% Similarity=0.197 Sum_probs=141.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785 80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (730)
++..|++++.|++|++||+... .+.+|...|.+++|+|++ .+|++++.|++|+|||+.+++.+..+.+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 5678999999999999998643 367899999999999975 6999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCC-eEEEEEcCCCCEEEEEE-----CCeEEEEEcC
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRP-IASIAFHASGELLAVAS-----GHKLYIWRYN 220 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~-V~sVafSPdG~~LAsgS-----dd~I~VWDl~ 220 (730)
|...|.+++|+| ++.+|++++.|++|+|||+++++.+..+. |.+. +..+.|.+++..|++++ ++.|++||++
T Consensus 167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999 99999999999999999999998877654 5443 45678999888777654 3459999998
Q ss_pred CCccccCCeEEe-cCCCCeEEEEEccCCCeEEEEEe
Q 004785 221 MREETSSPRIVL-RTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 221 t~~~~~~~~~l~-~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+..... .... .....+....|+++++.+++++.
T Consensus 246 ~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 246 KMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 765321 1222 23445667789999998877663
No 31
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.3e-19 Score=202.86 Aligned_cols=231 Identities=20% Similarity=0.252 Sum_probs=174.6
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCC-----------------------------------------------------
Q 004785 74 FEAGRDARRGLASWVEAESLHHLRPKY----------------------------------------------------- 100 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t----------------------------------------------------- 100 (730)
.+..+.+|++|+++++|+.|++|.+..
T Consensus 272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p 351 (712)
T KOG0283|consen 272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP 351 (712)
T ss_pred EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence 344567999999999999999998543
Q ss_pred -----------CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe
Q 004785 101 -----------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS 169 (730)
Q Consensus 101 -----------~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS 169 (730)
+.+.||.+.|.++.||.+ .+|+++|-|.+||||++...++++.|. |...|+||+|+|.|.++|++|+
T Consensus 352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 352 LKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred CccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecc
Confidence 024699999999999975 588999999999999999999999997 9999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEe------cCCCCeEEEE
Q 004785 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVL------RTRRSLRAVH 242 (730)
Q Consensus 170 ~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~------~h~~~V~sVa 242 (730)
.|+.|+||++...+.+...+...-|++++|.|||++.++|+ +|.+++|+....+......+.. .|. .|+.+.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q 508 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQ 508 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeE
Confidence 99999999999988888888889999999999999999999 6669999988766533221111 133 799999
Q ss_pred EccCCC-eEEEEEeeCCccCCCc--ceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEE
Q 004785 243 FHPHAA-PLLLTAEVNDLDSSES--SLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERIS 319 (730)
Q Consensus 243 FSPdG~-~Llatgsvwdl~s~~~--~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~ 319 (730)
|.|... .+++|+++-.++.-+. ..++.-+.|+. -.. ......|+.||+.|+
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-------------------------n~~-SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-------------------------NTS-SQISASFSSDGKHIV 562 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------cCC-cceeeeEccCCCEEE
Confidence 998654 3666655433332222 22222222221 111 123568999999999
Q ss_pred EEecCCCCCcccceeecC
Q 004785 320 LQHTEHDSGATRTQQSLR 337 (730)
Q Consensus 320 ~~~~~~dsgs~~~~~~~~ 337 (730)
... +|. .+|.|..+
T Consensus 563 s~s--eDs--~VYiW~~~ 576 (712)
T KOG0283|consen 563 SAS--EDS--WVYIWKND 576 (712)
T ss_pred Eee--cCc--eEEEEeCC
Confidence 855 444 34555544
No 32
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.4e-19 Score=180.58 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=158.9
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785 76 AGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 76 a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
+.......+++++.||++++||.... .++.|...|.++.|++ ++..++++|.|++||+|+...++.+.+|+||.
T Consensus 68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 68 WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN 147 (311)
T ss_pred ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence 34456778889999999999996432 4789999999999999 67788888999999999999999999999999
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCCCCeEEEEEcC-CCCEEEEEECC-eEEEEEcCCCcccc
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHA-SGELLAVASGH-KLYIWRYNMREETS 226 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l~h~~~V~sVafSP-dG~~LAsgSdd-~I~VWDl~t~~~~~ 226 (730)
..|+..+|+|...++++++|.|+++++||++. |+.+....|...|.++.|+. +.+.|++|+.+ .|++||+++-+.
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-- 225 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-- 225 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--
Confidence 99999999999999999999999999999986 55555556888999999987 45688888844 599999988765
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES 264 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~ 264 (730)
....+.+|.-.|+.|.|||...-++++++ +|+....+.
T Consensus 226 pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 226 PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 45678899999999999999888887665 666654443
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.81 E-value=2.1e-17 Score=198.95 Aligned_cols=178 Identities=18% Similarity=0.273 Sum_probs=148.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----C-------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC----P-------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL 142 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~-------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l 142 (730)
.+...++..+++++.|++|++|+.... . ...+...|.+++|++ ++.+|++++.|++|+|||+.+++.+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~ 568 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV 568 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 344457789999999999999997531 0 012346789999988 5789999999999999999999999
Q ss_pred EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEc-CCCCEEEEEEC-CeEEEEEcC
Q 004785 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH-ASGELLAVASG-HKLYIWRYN 220 (730)
Q Consensus 143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafS-PdG~~LAsgSd-d~I~VWDl~ 220 (730)
..+++|.+.|++++|+|.++.+|++|+.|++|++||+++++.+..+.+...+.++.|+ ++|.+|++|+. +.|++||++
T Consensus 569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999999999767899999999999999999999988888777889999995 57999999995 459999998
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.... ....+.+|...|.++.|. ++.++++++.
T Consensus 649 ~~~~--~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 649 NPKL--PLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred CCCc--cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 7653 123567899999999997 6776776654
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.80 E-value=8.1e-20 Score=194.58 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=151.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPW 153 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~ 153 (730)
..|++|++|+..|.+.+|+..+. .+..|...|.++.|+++|.++++|..+|.||+|+..-. .++.++.|. ..|.
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIR 184 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhh
Confidence 46789999999999999998765 36799999999999999999999999999999997544 455565555 8999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l 231 (730)
+++|+| +...|++++.|++|+|||....+.... .+|.-.|.++.|+|.-.+||+++++. |++||.+++.++. .+
T Consensus 185 dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tl 260 (464)
T KOG0284|consen 185 DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TL 260 (464)
T ss_pred eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hh
Confidence 999999 889999999999999999998766555 46888999999999999999999776 9999999999765 78
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..|...|..+.|+|++++|++.++
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccC
Confidence 899999999999999998888766
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.6e-18 Score=197.52 Aligned_cols=248 Identities=17% Similarity=0.235 Sum_probs=186.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
.+-.|.++-..|.|++||.+.+ ++.+|.++|..++|+|++.++++|++|.+|+||+..+.+++.++.||.+.|..+
T Consensus 20 ~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence 4556778888999999999877 578999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc--------
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET-------- 225 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~-------- 225 (730)
.||+ ..-+++|+|.|.+|+||+..+++++..+ +|...|.|..|+|....++++| |.+|+|||+..-...
T Consensus 100 ~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 100 FFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCch
Confidence 9999 8899999999999999999999999985 6999999999999999999999 667999998532110
Q ss_pred ------------------cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCC----
Q 004785 226 ------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYP---- 278 (730)
Q Consensus 226 ------------------~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p---- 278 (730)
-....+.+|+..|+-++|+|.-..+++++. .|.+...+ .....+-.||.+..
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVL 257 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEE
Confidence 012456789999999999999986666655 34332111 01223334443322
Q ss_pred -------------CCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceee
Q 004785 279 -------------PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS 335 (730)
Q Consensus 279 -------------~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~ 335 (730)
...+.+||...........-..+ ++|..+--|..+..+++ +|+|-.++-.+
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend---RFW~laahP~lNLfAAg---HDsGm~VFkle 321 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND---RFWILAAHPELNLFAAG---HDSGMIVFKLE 321 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccceeeeeccCC---eEEEEEecCCcceeeee---cCCceEEEEEc
Confidence 23455666655555544433222 45555555555555543 44444444443
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.9e-18 Score=191.52 Aligned_cols=180 Identities=16% Similarity=0.296 Sum_probs=160.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCcEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWV 154 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V~s 154 (730)
-+..+++|++|..|++|+..+. .+..|++.|.|++.+|...+++++|+|.+|++||-+.+ .+.++|.||...|..
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 5678999999999999999886 58899999999999999999999999999999999774 678999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCC--CEEEEEECCe-EEEEEcCCCccccCCeE
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG--ELLAVASGHK-LYIWRYNMREETSSPRI 230 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG--~~LAsgSdd~-I~VWDl~t~~~~~~~~~ 230 (730)
|+|+|.|.+.++|++.|++|++|.+....+..++. |...|+++.|-+-| .+|++|+|+. |+|||+++...+. .
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---T 222 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---T 222 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---H
Confidence 99999999999999999999999999888877764 99999999998866 4999999877 9999999998766 7
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~ 262 (730)
+.+|...|..+.|+|.-..+++++++..++.|
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 88999999999999999966666654444433
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=1.5e-18 Score=195.61 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=157.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~-------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (730)
..-..+++++.|.++++|++... ....|...|+|++.+|+.++|||||.|++.+||+++.+....+|
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence 34568899999999999998651 13479999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (730)
Q Consensus 146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~ 223 (730)
.||+..|++|.|+| ..++++|+|.|++|+||.+.+..|++++. |...|..+.|-.+|+.|++++.++ |+||++++.+
T Consensus 502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999 89999999999999999999999999987 999999999999999999988555 9999999998
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
... .+..|.+.|++++-++.+..+++++.
T Consensus 581 C~~---tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 581 CEM---TLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred hhh---hhhhccceeEEEeecCccceeEecCC
Confidence 755 78899999999999999996665544
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=169.72 Aligned_cols=174 Identities=21% Similarity=0.312 Sum_probs=149.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-----C---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCC
Q 004785 81 RRGLASWVEAESLHHLRPKYC-----P---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLHGHRR 150 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~-----~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~gH~~ 150 (730)
|..|++++.|+.|++|+...+ + =.+|+..|..++|+|.|++|+++|.|.++.||.-..+ +++..+.||..
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 558999999999999998732 1 2379999999999999999999999999999986544 67899999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe---EEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---CIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~---~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~ 225 (730)
.|.+++|++ ++++||+++.|+.|-||.+..+. +...+ +|...|..+.|||...+|++++ |++|++|+-.....-
T Consensus 107 EVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW 185 (312)
T KOG0645|consen 107 EVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW 185 (312)
T ss_pred ceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence 999999999 99999999999999999998553 44555 4899999999999999999999 666999987744332
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.....+.+|...|.+++|++.|..|+++..
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred eEEEEecCccceEEEEEecCCCceEEEecC
Confidence 234578889999999999999988888765
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.79 E-value=5.3e-19 Score=185.01 Aligned_cols=205 Identities=15% Similarity=0.233 Sum_probs=166.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
..-+...+++|..|.+|++||..+- +|.||++.|.|+.|. .+.|++|+.|.+|+|||.++|++++++-+|...|
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaV 280 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV 280 (499)
T ss_pred EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhccee
Confidence 3346678999999999999998764 689999999999995 6799999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~----l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~ 227 (730)
..+.|+. .++++++.|.+|.+||+.....+.. .+|...|+.+.|+ .++++++++++ |++|++.+.+.++
T Consensus 281 Lhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR- 354 (499)
T KOG0281|consen 281 LHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR- 354 (499)
T ss_pred EEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh-
Confidence 9999964 8999999999999999987653322 4689999999996 45999998666 9999999998765
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccC------------CCCeEEEecCCCC
Q 004785 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY------------PPPVICMAGAHSS 290 (730)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~------------p~~~V~l~d~~s~ 290 (730)
.+.+|...|.++.+ .|++++++++ +|++..+.+...+.++...++. -...+.+|+....
T Consensus 355 --tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 355 --TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred --hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccc
Confidence 78899999998887 4775555444 7888877776666654333220 1256788887766
Q ss_pred CCC
Q 004785 291 SHP 293 (730)
Q Consensus 291 d~~ 293 (730)
...
T Consensus 431 ldp 433 (499)
T KOG0281|consen 431 LDP 433 (499)
T ss_pred cCC
Confidence 554
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=6.2e-19 Score=191.21 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=167.0
Q ss_pred CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785 102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (730)
.+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|.+|..+|..++|+. .+..|+|++.|+.|++||+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence 5789999999999999 899999999999999999977 899999999999999999999 9999999999999999999
Q ss_pred CCCeEEEEecCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785 180 STAECIGSRDFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (730)
Q Consensus 180 ~tg~~i~~l~h~~~V~sVafSPdG-~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-- 255 (730)
.+|+++..+.....++++.|+||+ +.+++|+ +++|+.||+++++.++ ....|-..|..+.|-++|+++++++.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999999999999999999 5666665 6669999999999766 67778899999999999999999887
Q ss_pred ---eCCccCCCcceeEeccCCccc-----CC----------CCeEEEecCCCCCCCCcccccCCCCCCce--eeeEecCC
Q 004785 256 ---VNDLDSSESSLTLATSPGYWR-----YP----------PPVICMAGAHSSSHPGLAEEVPLITPPFL--RPSFVRDD 315 (730)
Q Consensus 256 ---vwdl~s~~~~~~l~t~sG~~~-----~p----------~~~V~l~d~~s~d~~~L~~~~~~~slpil--~p~FSpDg 315 (730)
+|+.+..-....+....-|.. +| ...+.+-.+.............+...+-. .+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 666553333222222111110 11 12222222233333333333333444444 68999999
Q ss_pred CEEEE
Q 004785 316 ERISL 320 (730)
Q Consensus 316 ~rI~~ 320 (730)
+.|+-
T Consensus 445 ~~l~S 449 (503)
T KOG0282|consen 445 RTLCS 449 (503)
T ss_pred CeEEe
Confidence 99995
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.79 E-value=2.5e-17 Score=165.03 Aligned_cols=172 Identities=27% Similarity=0.421 Sum_probs=150.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
.+..++++..++.|.+||..+. .+..|...|.++.|+|++.+|++++.|+.|++||+.+++.+..+..|...|.++
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 183 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183 (289)
T ss_pred CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence 3567777777999999999854 366799999999999999999998889999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR 233 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~ 233 (730)
.|+| +++.+++++.|+.|++||+++++.+..+ .+...+.++.|+|++.++++++ ++.|++||+.+++... .+..
T Consensus 184 ~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~~ 259 (289)
T cd00200 184 AFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ---TLSG 259 (289)
T ss_pred EECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE---Eccc
Confidence 9999 8888888888999999999998888887 6888999999999999999888 6779999998776543 4557
Q ss_pred CCCCeEEEEEccCCCeEEEEEe
Q 004785 234 TRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 234 h~~~V~sVaFSPdG~~Llatgs 255 (730)
|...|.++.|+++++++++++.
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecC
Confidence 8889999999999997777654
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.79 E-value=8e-18 Score=177.00 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=160.7
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 76 AGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
+.+.-.-+++++++|+.|+.||+++.+ +.||-..|.|++..|.-..|++|+.|.+++|||+++...+..+.||+.+
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 344566799999999999999999874 6799999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~ 230 (730)
|..+.+.| ..-.+++||.|++|++||++.|+.... +.|+..+.+++.+|....+|+++.+.|+-|++..+.... -
T Consensus 280 V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~---n 355 (460)
T KOG0285|consen 280 VASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ---N 355 (460)
T ss_pred ceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh---c
Confidence 99999999 677899999999999999999987766 458889999999999999999999999999999988655 4
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~ 263 (730)
+.+|...|..+....||- +++++. .||.+++.
T Consensus 356 lsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cccccceeeeeeeccCce-EEEcCCceEEEEEecCcCc
Confidence 788999999999999885 444443 55555433
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=7.3e-17 Score=194.25 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=145.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
.+..|++++.|++|++||..++ .+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 4678999999999999999876 4679999999999997 8899999999999999999999998888765 57999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc---ccCC
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE---TSSP 228 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~---~~~~ 228 (730)
+.|++.++.++++|+.|++|++||+++++ .+.. ..|...|.++.|. ++.+|++++. +.|+|||++.... ....
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 99976589999999999999999998765 3333 4688999999997 6788888885 5599999975421 1123
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 229 ~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..+.+|...+..+.|++++.++++++.
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 456788999999999999997777664
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.78 E-value=8.2e-19 Score=190.28 Aligned_cols=144 Identities=23% Similarity=0.324 Sum_probs=130.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
..+..|.+++.|+.|++|++... ++.+|..+|.++.|+.+|..|++++.|+.|++||+++|+++..|.. ...++
T Consensus 225 ~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~ 303 (503)
T KOG0282|consen 225 KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPT 303 (503)
T ss_pred ceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCce
Confidence 36788899999999999998752 6889999999999999999999999999999999999999998863 35688
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~ 223 (730)
++.|+|++.+.|++|+.|+.|+.||+++++.++.+. |-+.|..+.|-++|+.+++.+|++ ++||+.+..-
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 999999777999999999999999999999888876 778999999999999999999777 9999988764
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=8.8e-18 Score=183.08 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=141.3
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC--------CC-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC--------PL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-- 143 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L-~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-- 143 (730)
.+....|.++++|+-|-+|++||+..- .| ......|.++.|++.|..|++.+..-..+|+|-.....+.
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence 345568899999999999999998642 12 2344579999999999999888888899999954332222
Q ss_pred ----------EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEEec------CCCCeEEEEEcCCCCEE
Q 004785 144 ----------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD------FYRPIASIAFHASGELL 206 (730)
Q Consensus 144 ----------~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~l~------h~~~V~sVafSPdG~~L 206 (730)
.-+||...+++..|+|.+...|++++.|++++|||+...+. ...+. ..-.+.+++|++||+++
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 22689999999999999999999999999999999986543 22332 23478999999999999
Q ss_pred EEEEC-CeEEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe
Q 004785 207 AVASG-HKLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 207 AsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~--~V~sVaFSPdG~~Llatgs 255 (730)
|.|+. +.|.+||...............|.. .|++|.||+||++|++-+.
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 99995 5599999866654333344556766 8999999999999887654
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.1e-17 Score=166.87 Aligned_cols=206 Identities=23% Similarity=0.394 Sum_probs=153.8
Q ss_pred CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCC---eEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 102 PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG---SCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg---~~l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
++.+|++.+..++|+|- |..||+|+.|+.|+||+...+ .+...+ .+|+..|.+++|+| .+++|+++|.|.++.|
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI 87 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence 57899999999999996 889999999999999998853 344444 47999999999999 9999999999999999
Q ss_pred EECCCC--eEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 177 WNASTA--ECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 177 WDl~tg--~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
|.-..+ +++..+ +|...|.+++|+++|++||+++.++ |.||.+....+......+.+|...|..+.|+|... |++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~ 166 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLF 166 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeE
Confidence 987654 566665 4999999999999999999999666 99999987776666678899999999999999888 444
Q ss_pred EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccc
Q 004785 253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT 332 (730)
Q Consensus 253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~ 332 (730)
+++.++ .|+++....++.-.+.....+....+|...|.+.|.+++- .+++.-...+
T Consensus 167 S~SYDn----------------------TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s--~sdD~tv~Iw 222 (312)
T KOG0645|consen 167 SCSYDN----------------------TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS--CSDDGTVSIW 222 (312)
T ss_pred EeccCC----------------------eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE--ecCCcceEee
Confidence 444221 2222221112222222222223345667888888888775 3334333344
Q ss_pred e
Q 004785 333 Q 333 (730)
Q Consensus 333 ~ 333 (730)
.
T Consensus 223 ~ 223 (312)
T KOG0645|consen 223 R 223 (312)
T ss_pred e
Confidence 3
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.77 E-value=9.5e-17 Score=175.60 Aligned_cols=174 Identities=22% Similarity=0.289 Sum_probs=142.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC----CC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---------
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP----LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--------- 142 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~----L~---gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--------- 142 (730)
.++.++++.+.|++|.+||-+++. |. +|++.|.+++|+||+++|++++.|.++||||+.+.+++
T Consensus 200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v 279 (603)
T KOG0318|consen 200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV 279 (603)
T ss_pred CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence 468999999999999999999873 44 89999999999999999999999999999999665333
Q ss_pred ----------------------------------EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--
Q 004785 143 ----------------------------------KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-- 186 (730)
Q Consensus 143 ----------------------------------~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~-- 186 (730)
+.+.||...|+++..+| ++.+|++|+.||.|.-||+.+|..-+
T Consensus 280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccc
Confidence 33458999999999999 88999999999999999987654300
Q ss_pred -----------------------------Ee------------------------------------------c------
Q 004785 187 -----------------------------SR------------------------------------------D------ 189 (730)
Q Consensus 187 -----------------------------~l------------------------------------------~------ 189 (730)
.+ .
T Consensus 359 g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~ 438 (603)
T KOG0318|consen 359 GKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS 438 (603)
T ss_pred cccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence 00 0
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 190 ---FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 190 ---h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
..-...+++++|++..+++|+. ++|+||.+...+... ......|...|+.++||||+.+|+++.
T Consensus 439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEec
Confidence 0011347899999999999994 559999998766432 456788999999999999999877654
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.77 E-value=2.5e-17 Score=174.53 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=159.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---------------
Q 004785 81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------------- 137 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~--------------- 137 (730)
...+++++.|.++++|..+.+. -.||.+.|-++...++|..+++|+.|.+|+||+..
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 3468999999999999987652 24999999999999999999999999999999931
Q ss_pred ----------CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEE
Q 004785 138 ----------TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA 207 (730)
Q Consensus 138 ----------tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LA 207 (730)
++.++..+.||+.+|.+|.|++ ...+++++.|.+|+.||+.++..+..+..+..++++..+|..++|+
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence 1235667889999999999986 7889999999999999999999999998899999999999999999
Q ss_pred EEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCC
Q 004785 208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE 263 (730)
Q Consensus 208 sgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~ 263 (730)
+|+.+. |++||.+++........+.+|...|.++.|+|...+++++++ +||+++..
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999766 999999988665556788999999999999999999988776 88888655
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1e-17 Score=188.97 Aligned_cols=193 Identities=21% Similarity=0.249 Sum_probs=164.2
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE-----EE
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-----LK 143 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~-----l~ 143 (730)
.+.+..|+++++|+++++|.++.. ...+|...|.+++++..+ .+|+++|.|+++++|++...+. +.
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 356689999999999999977322 467999999999998744 6899999999999999976221 11
Q ss_pred ----EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEE
Q 004785 144 ----VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIW 217 (730)
Q Consensus 144 ----~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VW 217 (730)
....|...|++++++| +..+++|||.|++.+||++...+....+ +|...|.++.|+|..+.|+++|.|+ |+||
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 2257999999999999 9999999999999999999988888776 5999999999999999999999655 9999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY 274 (730)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~ 274 (730)
.+.+..... .+.+|...|..+.|-.+|+.|++++. +|++.+.++..++-.+...
T Consensus 533 ~is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 533 SISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred Eeccceeee---eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 999998755 78899999999999999999998876 8888887777766655444
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.3e-16 Score=164.35 Aligned_cols=179 Identities=19% Similarity=0.294 Sum_probs=148.7
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEEEec
Q 004785 74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHG 147 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~g 147 (730)
.+.-.+.|..+++.++|.++++||...++ +..++..|..+.|......++.++. |.+|+..++.+.+.++.|.|
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~G 98 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPG 98 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCC
Confidence 34456789999999999999999998873 5567778999999987777777766 89999999999999999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcccc
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS 226 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~ 226 (730)
|...|..++.+| .++.++|++.|++|++||++..++...+..... ..++|+|.|-++|++.+. .|++||++.-..-.
T Consensus 99 H~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 99 HKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred CCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 999999999999 779999999999999999998888777664443 357899999999999976 59999998764321
Q ss_pred CCeEEe---cCCCCeEEEEEccCCCeEEEEEe
Q 004785 227 SPRIVL---RTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 227 ~~~~l~---~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...+. ........+.|||||++|+.+.+
T Consensus 177 -F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 177 -FTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred -ceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 11111 23567889999999999988765
No 51
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.76 E-value=4e-17 Score=190.84 Aligned_cols=179 Identities=21% Similarity=0.271 Sum_probs=149.1
Q ss_pred EEEecCCCEEEEEe--CCCeEEEEeCCC----------------CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004785 75 EAGRDARRGLASWV--EAESLHHLRPKY----------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC 136 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs--~DgsIrlWd~~t----------------~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl 136 (730)
+....++..+++|+ .|+.+++|+.+. +++..|.+.|+|+.|++||++||+||+|+.|.||+.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 34456778889998 888999998752 235689999999999999999999999999999987
Q ss_pred CC------------------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEE
Q 004785 137 QT------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASI 197 (730)
Q Consensus 137 ~t------------------g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sV 197 (730)
.. .+.+..+.+|...|..+.|+| ++.++++++.|++|.|||.++.+.+..+ +|.+.|..+
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence 62 146778899999999999999 9999999999999999999999888876 499999999
Q ss_pred EEcCCCCEEEEEECCe-EEEEEcCCCcccc---CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 198 AFHASGELLAVASGHK-LYIWRYNMREETS---SPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 198 afSPdG~~LAsgSdd~-I~VWDl~t~~~~~---~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.|+|-|+|||+-+||+ |+||++.+..... .+.........++.+.|||||.+|++.-
T Consensus 178 s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 178 SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999877 9999976643322 1222223355788999999999888744
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=4.3e-17 Score=163.93 Aligned_cols=169 Identities=22% Similarity=0.269 Sum_probs=147.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
.+|+...+++.|++|++|+...+ ++.+|...|..++.+.|...|++|+.|+.|.+||+++|+.++.|.+|.+.|+.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNt 106 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNT 106 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeE
Confidence 47788889999999999999877 57799999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~ 230 (730)
++|+. +...+++|+.|.++++||-++. ++++.+. ..+.|.++... +..++.|+ |++++.||++.+....
T Consensus 107 V~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s---- 179 (307)
T KOG0316|consen 107 VRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS---- 179 (307)
T ss_pred EEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh----
Confidence 99998 9999999999999999999874 5677765 66788888875 56677777 7779999999997633
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.-...+|+++.|++||+..++++-
T Consensus 180 -Dy~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 180 -DYFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred -hhcCCcceeEEecCCCCEEEEeec
Confidence 223568999999999998777653
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=172.97 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=152.9
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC------------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYCP------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~------------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~ 144 (730)
.+.++..|++++.||-|.+|+..+++ +.-+...|.|+.||.|...||+|+.||.|+||.+++|.+++.
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr 300 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR 300 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH
Confidence 35688999999999999999998874 335788999999999999999999999999999999999999
Q ss_pred Ee-cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004785 145 LH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (730)
Q Consensus 145 l~-gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t 221 (730)
|. .|+..|+++.|+. ++..+++++.|.+++|.-+++|++++.+ +|...|+.+.|.+||..+++++ |++|+||+..+
T Consensus 301 FdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 301 FDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred hhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 96 8999999999999 8899999999999999999999999886 5899999999999999999988 55699999999
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.+... .....+....|.++..-|...--+..+
T Consensus 380 teC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 380 TECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred hhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence 88765 233344667889988888665433333
No 54
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.75 E-value=1.8e-17 Score=179.07 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=151.0
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC--CC
Q 004785 74 FEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ--TG 139 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~--tg 139 (730)
+.+.......|++++.|++|.+||+... .+.+|...|..++|++ +..+|+++++|+.+.|||++ +.
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 3444556778999999999999998643 2679999999999999 77889999999999999999 55
Q ss_pred eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEE
Q 004785 140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLY 215 (730)
Q Consensus 140 ~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~h~~~V~sVafSPdG~-~LAsgS-dd~I~ 215 (730)
++....++|.+.|+|++|+|.++.+||+||.|++|+|||+++-. ++..+ .|...|..|.|+|... .||+++ |+++.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 66778899999999999999999999999999999999999743 44444 5999999999999876 677666 55599
Q ss_pred EEEcCCCcccc-----------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 216 IWRYNMREETS-----------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 216 VWDl~t~~~~~-----------~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
|||+..-...+ ..+...+|...|..+.|+|+..+++++..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 99997644321 12445578899999999999999888776
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=7.4e-18 Score=192.85 Aligned_cols=147 Identities=21% Similarity=0.344 Sum_probs=128.7
Q ss_pred CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--------------------------------C---------
Q 004785 102 PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--------------------------------G--------- 139 (730)
Q Consensus 102 ~L~-gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t--------------------------------g--------- 139 (730)
.+. .|.+.|.++.||+||++||+|+.|+.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 355 8999999999999999999999999999998744 0
Q ss_pred -------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEc
Q 004785 140 -------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200 (730)
Q Consensus 140 -------------------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafS 200 (730)
+++..|+||.+.|..+.|+. .++|++++.|.||+||++...+|++.|.|.+.|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 23445679999999999995 789999999999999999999999999999999999999
Q ss_pred C-CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 201 A-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 201 P-dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
| |.+|+++|+ |++|+||++...+... ......-|++++|.|||++.+++.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCCceEEEEE
Confidence 9 677999999 8889999998876533 445568899999999999777654
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.74 E-value=4.7e-16 Score=178.39 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=178.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
+..+++++.+.+|++||...+ .+.||.+.|.+++|..-+.+|++|+.|.++++||+.+|+++..+.+|...|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 678999999999999998876 388999999999998878899999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEec
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLR 233 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~ 233 (730)
...+ .++++|+.|.+|++||+.++.++..+. |...|+++..+ +.++++|+. +.|+|||+.+++.+. .+.+
T Consensus 298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g 369 (537)
T KOG0274|consen 298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG 369 (537)
T ss_pred EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence 8854 888999999999999999999999988 99999999998 889999985 459999999888655 7888
Q ss_pred CCCCeEEEEEccCCCeEEEEE-----eeCCccCC-CcceeEeccCCccc------------CCCCeEEEecCCCCCCCCc
Q 004785 234 TRRSLRAVHFHPHAAPLLLTA-----EVNDLDSS-ESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGL 295 (730)
Q Consensus 234 h~~~V~sVaFSPdG~~Llatg-----svwdl~s~-~~~~~l~t~sG~~~------------~p~~~V~l~d~~s~d~~~L 295 (730)
|...|+++.+... ..++.++ .+||++.. ++..++..+.+.+. .....+.+||....+....
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 9999999988765 4444433 28999988 77777666655542 1235688898888877776
Q ss_pred cccc
Q 004785 296 AEEV 299 (730)
Q Consensus 296 ~~~~ 299 (730)
....
T Consensus 449 ~~~~ 452 (537)
T KOG0274|consen 449 LEGR 452 (537)
T ss_pred eccC
Confidence 6653
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-16 Score=178.10 Aligned_cols=217 Identities=19% Similarity=0.203 Sum_probs=175.4
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCC
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRT 151 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~~~ 151 (730)
...|..|+.|..+|.|.+||.... .+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...
T Consensus 226 s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe 303 (484)
T KOG0305|consen 226 SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE 303 (484)
T ss_pred CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence 457899999999999999998765 4666 99999999998 77899999999999999998776554 8899999
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCC-CCEEEEEE---CCeEEEEEcCCCcccc
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHAS-GELLAVAS---GHKLYIWRYNMREETS 226 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPd-G~~LAsgS---dd~I~VWDl~t~~~~~ 226 (730)
|..++|++ +++++++|+.|+.+.|||....+++.. .+|...|.+++|+|- ..+||+|+ |..|++||..++..+.
T Consensus 304 VCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 304 VCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 99999999 999999999999999999976655554 579999999999995 45899987 3349999999887655
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004785 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF 306 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpi 306 (730)
.......|.+|.|++..+-|+++-+ | +...+.+|...+. .......+...++
T Consensus 383 ----~vdtgsQVcsL~Wsk~~kEi~sthG------------------~---s~n~i~lw~~ps~---~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 383 ----SVDTGSQVCSLIWSKKYKELLSTHG------------------Y---SENQITLWKYPSM---KLVAELLGHTSRV 434 (484)
T ss_pred ----ccccCCceeeEEEcCCCCEEEEecC------------------C---CCCcEEEEecccc---ceeeeecCCccee
Confidence 4556789999999999988877643 2 2234555554442 2333444567778
Q ss_pred eeeeEecCCCEEEEEecCC
Q 004785 307 LRPSFVRDDERISLQHTEH 325 (730)
Q Consensus 307 l~p~FSpDg~rI~~~~~~~ 325 (730)
+..+.||||..|+..-.+.
T Consensus 435 l~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADE 453 (484)
T ss_pred EEEEECCCCCEEEEecccC
Confidence 8889999999999854444
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.74 E-value=8.5e-18 Score=176.07 Aligned_cols=221 Identities=19% Similarity=0.273 Sum_probs=170.1
Q ss_pred CCCCCcceecccccccccCCCC-ccceeeeccCcceeec-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--
Q 004785 30 HRNSRLRNVFGLLAQREVAPRT-KHSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-- 101 (730)
Q Consensus 30 ~rsSk~r~If~~~~krEis~~~-~~~~k~~wd~~~~~~s-----~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-- 101 (730)
.++.+.+.+|...-..+.-..+ +..+.+.||.+...+. +..+.+..- -..+.|++|+.|.+|++||.+++
T Consensus 192 c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq--yd~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 192 CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ--YDERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CCcccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee--ccceEEEecCCCceEEEEeccCCch
Confidence 3455566676665444433333 3345667776554332 222222222 35568999999999999999998
Q ss_pred --CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 102 --PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 102 --~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
++-+|...|..+.|+ ..++++++.|.++.+||+.... +.+.+.||...|+.+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEE
Confidence 477999999999998 5699999999999999997754 336678999999999995 479999999999999
Q ss_pred EECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 177 WNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 177 WDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
|++.+++.+.++. |+..|.++.+ .|+++++|+. .+|++||+..+..++ .+.+|..-|+++.|. .+.+++++
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd--~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFD--NKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeec--Cceeeecc
Confidence 9999999999874 8889988776 5899999985 559999999998765 789999999999995 55577755
Q ss_pred e-----eCCccCCCc
Q 004785 255 E-----VNDLDSSES 264 (730)
Q Consensus 255 s-----vwdl~s~~~ 264 (730)
- +|++..+..
T Consensus 418 YDGkikvWdl~aald 432 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALD 432 (499)
T ss_pred ccceEEEEecccccC
Confidence 3 777764443
No 59
>PTZ00420 coronin; Provisional
Probab=99.73 E-value=3.8e-16 Score=179.85 Aligned_cols=174 Identities=9% Similarity=0.046 Sum_probs=130.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCCeEEEEEe
Q 004785 80 ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTGSCLKVLH 146 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~------------~L~gH~~~Vt~lafSPDG~~-LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (730)
.+..|++++.|++|++||+.+. .+.+|...|.+++|+|++.. |++++.|++|+|||+.+++.+..+.
T Consensus 86 ~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~ 165 (568)
T PTZ00420 86 FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN 165 (568)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 4678999999999999998643 25789999999999998875 5789999999999999998877776
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEE-----EEEcCCCCEEEEEE-CC----eEE
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIAS-----IAFHASGELLAVAS-GH----KLY 215 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~s-----VafSPdG~~LAsgS-dd----~I~ 215 (730)
|...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. |.+.+.. ..|++++.+|++++ ++ .|+
T Consensus 166 -~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 166 -MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred -cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 567899999999 89999999999999999999998887764 6654432 34568989888876 33 499
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
|||++..........+..+...+......++|.+++++.+
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 9999864321101111122233333334445665555443
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-16 Score=178.55 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=158.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
....+.+|+.|+.|..+|+... .+.+|...|..++|++|+++||+|++|+.|.|||......+..+..|.+.|..
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 4667889999999999998764 37889999999999999999999999999999999888889999999999999
Q ss_pred EEEccCCCCEEEEE--eCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCe
Q 004785 155 VRFHPLNPTIIASG--SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPR 229 (730)
Q Consensus 155 VafSP~dg~lLaSg--S~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~ 229 (730)
++|+|....+||+| +.|+.|++||..+++.+..+.....|.++.|++..+-|+++- ++.|.||++.+.+.. .
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~ 425 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---A 425 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---e
Confidence 99999889999995 569999999999999999999999999999999998777665 344999999986654 4
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (730)
Q Consensus 230 ~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~ 260 (730)
.+.+|...|..++++|||..+++++.+..++
T Consensus 426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred eecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence 7889999999999999999988887644333
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.72 E-value=1e-15 Score=167.68 Aligned_cols=169 Identities=15% Similarity=0.284 Sum_probs=143.8
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---cCCCCcEE
Q 004785 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---GHRRTPWV 154 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---gH~~~V~s 154 (730)
-+++++++|++|.+|+-.-- .+..|..-|+|+.|+|||.++++++.|++|.+||-.+|+.+..|. +|++.|++
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 47899999999999985422 467899999999999999999999999999999999999999997 89999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------------------------------------ecC
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--------------------------------------------RDF 190 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--------------------------------------------l~h 190 (730)
++|+| |+..+++++.|.+++|||+.+++++.+ .+|
T Consensus 241 lsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH 319 (603)
T KOG0318|consen 241 LSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH 319 (603)
T ss_pred EEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence 99999 999999999999999999987655222 136
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 191 YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 191 ~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
...|++++.+||+++|++|+ |+.|.-||..++...+ ..-..|...|.+++-+..+. +++.+
T Consensus 320 nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~--~~g~~h~nqI~~~~~~~~~~-~~t~g 381 (603)
T KOG0318|consen 320 NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR--LAGKGHTNQIKGMAASESGE-LFTIG 381 (603)
T ss_pred ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc--cccccccceEEEEeecCCCc-EEEEe
Confidence 67899999999999999999 5559999998887533 22367899999999887676 44444
No 62
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=8.3e-17 Score=174.85 Aligned_cols=213 Identities=20% Similarity=0.223 Sum_probs=173.8
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~ 150 (730)
...++..|+.|++..++.+||+...+ |..-.-..++++.|||.+..+++..||.|.|||+.+...++.|+||.+
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 34578889999999999999987652 333334578899999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~ 229 (730)
.+.||.+++ ++..|-+|+.|++||-||+++++.+...++...|.++..+|.+.+|++|-.+. +.|-.....+. .
T Consensus 553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----y 627 (705)
T KOG0639|consen 553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----Y 627 (705)
T ss_pred CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----e
Confidence 999999999 99999999999999999999999988888999999999999999999998654 88777666543 3
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceee
Q 004785 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP 309 (730)
Q Consensus 230 ~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p 309 (730)
.+..|...|.++.|.+-|+++++++.++-+..|... -|- .|+- . ....+++.+
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP------yGa------siFq-----------s----kE~SsVlsC 680 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP------YGA------SIFQ-----------S----KESSSVLSC 680 (705)
T ss_pred eecccccEEEEEEecccCceeeecCchhhhhhccCc------ccc------ceee-----------c----cccCcceee
Confidence 477789999999999999999999985544433321 111 1110 0 123456778
Q ss_pred eEecCCCEEEEE
Q 004785 310 SFVRDDERISLQ 321 (730)
Q Consensus 310 ~FSpDg~rI~~~ 321 (730)
..|.|+++|+-+
T Consensus 681 DIS~ddkyIVTG 692 (705)
T KOG0639|consen 681 DISFDDKYIVTG 692 (705)
T ss_pred eeccCceEEEec
Confidence 889999999863
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.1e-16 Score=165.82 Aligned_cols=155 Identities=28% Similarity=0.411 Sum_probs=132.1
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------------C------eEEEEEecCCCCcEEEEEccCCC
Q 004785 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------G------SCLKVLHGHRRTPWVVRFHPLNP 162 (730)
Q Consensus 101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------------g------~~l~~l~gH~~~V~sVafSP~dg 162 (730)
+.+..|+..+.+.+||+||.++|+|+.|..|+|.|++. | -.+++|..|...|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 34778999999999999999999999999999999851 1 25678889999999999999 99
Q ss_pred CEEEEEeCCCcEEEEECCCCeE---EEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCe
Q 004785 163 TIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 163 ~lLaSgS~DgtVrLWDl~tg~~---i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
.+|++++.|++|+++|+.+... .+.+....+|.++.|+|.|.+|++|.++- +++||+++.+.......-..|...|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999999986433 33456778999999999999999999876 9999999987644333455789999
Q ss_pred EEEEEccCCCeEEEEEee
Q 004785 239 RAVHFHPHAAPLLLTAEV 256 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsv 256 (730)
++|.+++.|+..++++..
T Consensus 265 ~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKD 282 (430)
T ss_pred eEEEecCCccEEEEeccC
Confidence 999999999977666553
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=3.6e-16 Score=162.18 Aligned_cols=224 Identities=18% Similarity=0.237 Sum_probs=174.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC----------------------CCCCCCCCCeEEEEECCCCCEEEEEe
Q 004785 69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKY----------------------CPLSPPPRSTIAAAFSPDGKTLASTH 126 (730)
Q Consensus 69 s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t----------------------~~L~gH~~~Vt~lafSPDG~~LaSgS 126 (730)
.......+.+.+|..+++|+.|.+|++.|.+. .+|-.|...|+++.|+|....|++|+
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 33445556677899999999999999999862 03557899999999999999999999
Q ss_pred CCCeEEEEECCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEE
Q 004785 127 GDHTVKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAF 199 (730)
Q Consensus 127 ~DgtVrVWDl~tg~~l---~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVaf 199 (730)
.|++|++||+..-... +.|+ ...+|.++.|+| .+.+++.|....++++||+.+-++.... +|.+.|+++.+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 9999999999764322 2333 446799999999 9999999999999999999999987663 48889999999
Q ss_pred cCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc-
Q 004785 200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS- 271 (730)
Q Consensus 200 SPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~- 271 (730)
++.|++.++++.++ |+|||--..+.+.. ....| ...|.+..|..+|+|+++++. +|.+.++.....+.+.
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t--~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRT--IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHH--HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 99999999999555 99999888876551 22234 567999999999999998775 8888887776555432
Q ss_pred -CCccc---------------CC---CCeEEEecCCCCCCCCcc
Q 004785 272 -PGYWR---------------YP---PPVICMAGAHSSSHPGLA 296 (730)
Q Consensus 272 -sG~~~---------------~p---~~~V~l~d~~s~d~~~L~ 296 (730)
+|... +| ...++.|+..+.+...+.
T Consensus 348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 23222 22 244666776666665544
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.71 E-value=6.1e-16 Score=166.25 Aligned_cols=180 Identities=15% Similarity=0.162 Sum_probs=159.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
....+.+|+.|+.+.++|.... .++||...|+.+.|+++...+++++.|..|+||.............|..+|+.+
T Consensus 230 s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 230 SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL 309 (506)
T ss_pred CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee
Confidence 3578889999999999998876 588999999999999999999999999999999998888788889999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l 231 (730)
..+| .+++|++++.|++..+.|++++..+....+. -.+++.+|||||.+|.+|.-++ |+|||+....... .+
T Consensus 310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~F 385 (506)
T KOG0289|consen 310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KF 385 (506)
T ss_pred eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cC
Confidence 9999 9999999999999999999999988776654 3589999999999999999554 9999999887544 67
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~ 263 (730)
.+|...|..++|+.+|-||+++++ .||++...
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 889999999999999999988775 55655433
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.71 E-value=2.5e-15 Score=158.87 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=177.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
....+++|+.|..-.+|+..++ .+.+|+..|+++.||.||.+||||.-+|.|+||+..++.....+..--..+.-+
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 6678889999999999999987 578999999999999999999999999999999999999888886556667789
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe----
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR---- 229 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~---- 229 (730)
.||| ...+|+.|+.||.|..|.+.++...+. .+|..++++=.|.|||+.++++.+++ |++|+..++.......
T Consensus 155 ~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 155 KWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred Eecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 9999 999999999999999999998554444 56999999999999999999999655 9999999876422000
Q ss_pred --------------------------------------------EEecCCCCeEEEEEccCCCe--EEEEEe------eC
Q 004785 230 --------------------------------------------IVLRTRRSLRAVHFHPHAAP--LLLTAE------VN 257 (730)
Q Consensus 230 --------------------------------------------~l~~h~~~V~sVaFSPdG~~--Llatgs------vw 257 (730)
....+...+.+|.|.|.... |++++. +|
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 00011112223333332211 222222 66
Q ss_pred CccCCCcceeEeccC----------Cccc--CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCC
Q 004785 258 DLDSSESSLTLATSP----------GYWR--YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH 325 (730)
Q Consensus 258 dl~s~~~~~~l~t~s----------G~~~--~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~ 325 (730)
|+..+..+....--. .|.- -....+..|+..++.......+ ...+++-.+++||.++|+-...++
T Consensus 314 D~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 314 DLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCCC
Confidence 665444332221111 1111 1246788899888877766665 666888899999999998744444
No 67
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.1e-16 Score=175.52 Aligned_cols=176 Identities=16% Similarity=0.200 Sum_probs=150.9
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
.+.-...-.+.+.++|-+|++||-+.. ++.||...|.+++|+| |.+.+|+++-|++|+||.+.+..+..++++|
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH 182 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH 182 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc
Confidence 333345668889999999999997753 6899999999999999 7889999999999999999999999999999
Q ss_pred CCCcEEEEEccCCC--CEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc
Q 004785 149 RRTPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE 224 (730)
Q Consensus 149 ~~~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~ 224 (730)
...|++|.+-+ ++ -+++||+.|.+|+|||.++.+|++++. |...|..+.|+|.=.++++|+. ++++||+..+-+.
T Consensus 183 ekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 183 EKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred ccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 99999999987 43 399999999999999999999999986 9999999999999999999994 5599999887765
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.. .+.-.-..|++++-.+.++.++.+.
T Consensus 262 E~---tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 262 EK---TLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred hh---hhhcCCceEEEEeecCCCCeEEEec
Confidence 43 3344456788888888777655543
No 68
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=6.7e-17 Score=183.07 Aligned_cols=185 Identities=19% Similarity=0.229 Sum_probs=158.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC---C----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785 79 DARRGLASWVEAESLHHLRPKY---C----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t---~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~ 150 (730)
-....|++++..|.|.+||+.. . .+..|.+.+++++|++ ...+|++||.||+||+||++..+...++.+...
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 3567899999999999999876 2 3679999999999999 678999999999999999999998889988889
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~ 227 (730)
.|..|+|+|..++.|+++...|.+++||++... +... ..|.++|.++.|+|++.+||+|+.|+ |+|||+.+... .
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~ 255 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--K 255 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--c
Confidence 999999999888999999999999999999754 3333 46999999999999999999999555 99999987654 2
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe--------eCCccCCCcc
Q 004785 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESS 265 (730)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs--------vwdl~s~~~~ 265 (730)
+........+|..|.|-|+.++.++++. +||++..-.+
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 3445566789999999999998888765 8888855443
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.1e-15 Score=159.20 Aligned_cols=173 Identities=18% Similarity=0.188 Sum_probs=147.3
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~ 150 (730)
....+..+++|+.|.+|++||.... .+..|.+.|+++.|.++-. .|++|++||.|.+|+....+++..+++|.+
T Consensus 49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~ 128 (362)
T KOG0294|consen 49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG 128 (362)
T ss_pred EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc
Confidence 3348899999999999999998764 5888999999999999765 899999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~ 230 (730)
.|+.++.|| .+++.++.+.|+.+++||+-.|+.-..+........+.|+|.|.+++++..++|-||.+.+.....
T Consensus 129 ~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~---- 203 (362)
T KOG0294|consen 129 QVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR---- 203 (362)
T ss_pred ccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh----
Confidence 999999999 999999999999999999999988777776666677999999999999999999999998876533
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.......+.++-|...+ +++++++
T Consensus 204 ~i~~~~r~l~~~~l~~~-~L~vG~d 227 (362)
T KOG0294|consen 204 EIENPKRILCATFLDGS-ELLVGGD 227 (362)
T ss_pred hhhccccceeeeecCCc-eEEEecC
Confidence 22223456677776444 4555554
No 70
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=2.4e-16 Score=174.63 Aligned_cols=259 Identities=16% Similarity=0.158 Sum_probs=180.4
Q ss_pred CCCCCcceecccccccccCCCCccceeeeccC--cceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CCCC--
Q 004785 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGE--TARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY-CPLS-- 104 (730)
Q Consensus 30 ~rsSk~r~If~~~~krEis~~~~~~~k~~wd~--~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t-~~L~-- 104 (730)
-..||||++-+....+.--+.+++........ +..+++ ...+ .+--.+..|.|-+|++.. ++|.
T Consensus 551 G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan----~~rv-------AVPL~g~gG~iai~el~~PGrLPDg 619 (1012)
T KOG1445|consen 551 GQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCAN----NKRV-------AVPLAGSGGVIAIYELNEPGRLPDG 619 (1012)
T ss_pred ccchheeeccCccccchhhhhhhhcccccCCCccCceeec----cceE-------EEEecCCCceEEEEEcCCCCCCCcc
Confidence 34578888888877776555555544433322 222222 1111 111234467888888764 2221
Q ss_pred -----CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCC
Q 004785 105 -----PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171 (730)
Q Consensus 105 -----gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D 171 (730)
-....|+++.|+| |...||.+++|+.|+||.+..+ ..-..+++|...|+++.|||.-.+.|++++.|
T Consensus 620 v~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 620 VMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred cccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 2345699999999 8999999999999999998654 34567889999999999999889999999999
Q ss_pred CcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCC
Q 004785 172 HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAA 248 (730)
Q Consensus 172 gtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~-h~~~V~sVaFSPdG~ 248 (730)
.+|+|||+++++.... .+|.+.|.+++|||||+.+|+.+ |++|+||..+.++... ..-.+ -...-..+.|.-||+
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--~Eg~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--YEGKGPVGTRGARILWACDGR 777 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc--ccCCCCccCcceeEEEEecCc
Confidence 9999999999877655 46999999999999999999999 5669999998876421 11111 112234677888999
Q ss_pred eEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 249 PLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 249 ~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
++++++-... ....+.+.+...-+..++.+...+..-..+.|.|.+|.+.+.+
T Consensus 778 ~viv~Gfdk~-------------------SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 778 IVIVVGFDKS-------------------SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFL 830 (1012)
T ss_pred EEEEeccccc-------------------chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEE
Confidence 8777652111 1123444444444445566666666666778889999888876
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=9e-16 Score=165.94 Aligned_cols=183 Identities=18% Similarity=0.251 Sum_probs=151.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe----
Q 004785 80 ARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---- 140 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~--------------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~---- 140 (730)
+...|++....+.|.+||.... +|.+|.+.-+++.|++ ....|++++.|++|.+||+....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK 215 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc
Confidence 5567778889999999997531 4779999888999999 45589999999999999996532
Q ss_pred ---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC--CeEEEE-ecCCCCeEEEEEcCCC-CEEEEEE-CC
Q 004785 141 ---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGS-RDFYRPIASIAFHASG-ELLAVAS-GH 212 (730)
Q Consensus 141 ---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t--g~~i~~-l~h~~~V~sVafSPdG-~~LAsgS-dd 212 (730)
....+.+|...|..++|++.+.++|++++.|+.+.|||+++ .++... ..|...|++++|+|-+ .+||+|+ |+
T Consensus 216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 34678999999999999999999999999999999999995 333333 3589999999999955 5888888 56
Q ss_pred eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES 264 (730)
Q Consensus 213 ~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~ 264 (730)
+|.+||+|+-.. .+..+.+|...|..|.|||+...++++++ +||+.....
T Consensus 296 tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 296 TVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred cEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 699999998776 56788999999999999999998888776 777764443
No 72
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=8.5e-17 Score=179.40 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=163.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEEe
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH 146 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~ 146 (730)
..++.|++++.|+.|++|+...- .+..|..-|+++....+|+.|+++|.|.+|++|+...+ -++..+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 35568999999999999997642 46789999999999999999999999999999999887 5778899
Q ss_pred cCCCCcEEEEE-ccCCCCEEEEEeCCCcEEEEECCCCeE--EEEe----------cCCCCeEEEEEcCCCCEEEEEECCe
Q 004785 147 GHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAVASGHK 213 (730)
Q Consensus 147 gH~~~V~sVaf-SP~dg~lLaSgS~DgtVrLWDl~tg~~--i~~l----------~h~~~V~sVafSPdG~~LAsgSdd~ 213 (730)
.|...|.|++. .+ +..+++||+.|+.|.+||+.++.. +..+ ++...|++++..+.|..++.|+-.+
T Consensus 115 ~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 99999999999 66 889999999999999999998733 2221 4667899999999998888888555
Q ss_pred -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785 214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG 273 (730)
Q Consensus 214 -I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG 273 (730)
|++||.++.+.+. .+.+|...|+.+..++||+.++++++ +|++....+..++..+..
T Consensus 194 ~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 9999999998755 67799999999999999999998775 888887777766655433
No 73
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.69 E-value=1.7e-15 Score=156.90 Aligned_cols=165 Identities=22% Similarity=0.281 Sum_probs=135.6
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
.+.+|++.|+.+.|+|+|..||+|+.|..|.+|++. .-+....+++|.+.|..+.|.+ +++.+++++.|.+|+.||.+
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence 578999999999999999999999999999999953 3345677899999999999999 99999999999999999999
Q ss_pred CCeEEEEec-CCCCeEEEEEcCCCCE-EEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785 181 TAECIGSRD-FYRPIASIAFHASGEL-LAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (730)
Q Consensus 181 tg~~i~~l~-h~~~V~sVafSPdG~~-LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-- 255 (730)
+|++++.+. |.+-|+++.-+.-|.. +.++++++ ++|||+++.+... .......++++.|..++..+++++=
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence 999998865 7788888885555654 45556555 9999999887644 4455678999999999987777653
Q ss_pred ---eCCccCCCcceeEecc
Q 004785 256 ---VNDLDSSESSLTLATS 271 (730)
Q Consensus 256 ---vwdl~s~~~~~~l~t~ 271 (730)
+|+++..+....+.++
T Consensus 197 ~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred ceeeeccccCcceEEeecc
Confidence 6777766665555543
No 74
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.69 E-value=4.6e-16 Score=164.87 Aligned_cols=182 Identities=18% Similarity=0.306 Sum_probs=150.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC
Q 004785 79 DARRGLASWVEAESLHHLRPKYC--------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ 137 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~--------------------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~ 137 (730)
......++|++.|.|++|++... ++.+|.+.=++++||| .-..|++|.--+.|++|...
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 35677889999999999998521 3568998899999999 33357788777899999998
Q ss_pred CCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004785 138 TGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASG 211 (730)
Q Consensus 138 tg~~l---~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~i~~l~h~~~V~sVafSPdG~~LAsgSd 211 (730)
+|.=. ..|.+|+..|-.++|+|.....|+|||.|++|+|||++.+ .++....|.+.|+.|.|+-+-.+||+|+|
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 86422 4567899999999999988899999999999999999988 45666679999999999998889999997
Q ss_pred Ce-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785 212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (730)
Q Consensus 212 d~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~ 260 (730)
++ ++|||+++-+.......+..|..+|++|.|+|.....+++++ +||+.
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 66 999999987766556678889999999999997765555443 66654
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.68 E-value=2.3e-15 Score=161.91 Aligned_cols=173 Identities=19% Similarity=0.313 Sum_probs=149.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCcE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~~~V~ 153 (730)
....+++++.|..|++|..... ....|..+|+.+..+|.|.+|+++++|++..+.|+++|..+...... .-.++
T Consensus 272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 4567789999999999997654 36789999999999999999999999999999999999988766532 23478
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l 231 (730)
+.+||| |+.+|.+|..|+.|+|||+..+..+..|+ |.++|..++|+-+|.+|++++++. |++||+++.+... ...
T Consensus 352 s~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~ 428 (506)
T KOG0289|consen 352 SAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQ 428 (506)
T ss_pred EeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--eee
Confidence 999999 99999999999999999999998887775 899999999999999999999877 9999999887533 233
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
......|.++.|.+.|.+|++.++
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecc
Confidence 334457999999999999988865
No 76
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.2e-15 Score=154.31 Aligned_cols=232 Identities=14% Similarity=0.154 Sum_probs=165.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCe--EEEEEecC
Q 004785 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGH 148 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH 148 (730)
-+++|++++.|++|+++..... +|.||.++|..++|.. -|.+||+++.||.|.||.-.+|+ ....+..|
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 4789999999999999998753 4889999999999987 79999999999999999988874 23456789
Q ss_pred CCCcEEEEEccCCC-CEEEEEeCCCcEEEEECCCC-eE-EE--EecCCCCeEEEEEcCC---C-----------CEEEEE
Q 004785 149 RRTPWVVRFHPLNP-TIIASGSLDHEVRLWNASTA-EC-IG--SRDFYRPIASIAFHAS---G-----------ELLAVA 209 (730)
Q Consensus 149 ~~~V~sVafSP~dg-~lLaSgS~DgtVrLWDl~tg-~~-i~--~l~h~~~V~sVafSPd---G-----------~~LAsg 209 (730)
...|++|+|.|.+. -.|++++.||.|.|.++++. .- .. ...|.-.|++++|.|. | +.|++|
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 99999999999443 36788999999999998864 21 11 2358889999999996 5 568888
Q ss_pred E-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC---CeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEe
Q 004785 210 S-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA---APLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMA 285 (730)
Q Consensus 210 S-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG---~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~ 285 (730)
+ |+.|+||+...+.-.. ...+.+|.+.|+.++|.|.- +..+++++.+ ..+.+|
T Consensus 182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD----------------------g~viIw 238 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD----------------------GTVIIW 238 (299)
T ss_pred CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhccccCCCceeeEEecCC----------------------CcEEEE
Confidence 7 5559999998874332 33578999999999999965 2233343311 112222
Q ss_pred cCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeec
Q 004785 286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL 336 (730)
Q Consensus 286 d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~ 336 (730)
......+.--.+.....+-++|..+||.-|..+++. ..+...+++...+
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs--~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS--GGDNKVTLWKENV 287 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEe--cCCcEEEEEEeCC
Confidence 211111111111111234467789999999999983 3344445554433
No 77
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.68 E-value=7.9e-16 Score=163.13 Aligned_cols=175 Identities=20% Similarity=0.427 Sum_probs=135.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC---eEEEEEecCC
Q 004785 81 RRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHR 149 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~ 149 (730)
...|.+|.--+.|++|...++ .+.+|+..|-.+.||| ....|++||-|++|+|||++.+ .++. .+.|.
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~ 302 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHN 302 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccC
Confidence 345677777778999988765 5789999999999999 5678999999999999999998 3333 38999
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCC---CeEEEEec-CCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCCc
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGSRD-FYRPIASIAFHASGE--LLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t---g~~i~~l~-h~~~V~sVafSPdG~--~LAsgSdd~I~VWDl~t~~ 223 (730)
+.|+.|.|+. ...+|++|+.||+++|||++. ++++..+. |+.+|++|.|+|... ++++|.|+.|.|||+....
T Consensus 303 sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 303 SDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999998 666999999999999999986 45666665 899999999999544 4444556779999986432
Q ss_pred c-------------ccCCeEEecC--CCCeEEEEEccCCCeEEEEEeeC
Q 004785 224 E-------------TSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 224 ~-------------~~~~~~l~~h--~~~V~sVaFSPdG~~Llatgsvw 257 (730)
. ...+..+.-| ...+..|.|+++-.-++++....
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 1 0112334444 45688899999877666665543
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=1.3e-14 Score=150.61 Aligned_cols=176 Identities=17% Similarity=0.223 Sum_probs=134.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785 82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa 156 (730)
..+++...|+.|++||..+++ +..+ ..+.+++|+|||+.+ ++++.|+.|++||+.+++.+..+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 456788899999999988763 3333 347789999999876 5667789999999999988877766544 56789
Q ss_pred EccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEEec
Q 004785 157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR 233 (730)
Q Consensus 157 fSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~~~l~~ 233 (730)
|+| +++.+ +++..|+.|++||+.+++.+..+.....+.+++|+|+|+++++++.+. +++||.++.+... . ..
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~---~-~~ 154 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD---N-VL 154 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE---E-EE
Confidence 999 66655 555678999999999988887777666678999999999999888543 7888987765432 1 12
Q ss_pred CCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785 234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES 264 (730)
Q Consensus 234 h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~ 264 (730)
....+..+.|+|+|+++++++. +|++..++.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 2345678999999998866542 777766544
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=4e-15 Score=151.76 Aligned_cols=178 Identities=17% Similarity=0.257 Sum_probs=152.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
-.|..|++++.|+++.+|+++.. ...+|.+.|-.++|+| ...+|++++.|.+|++||++.++++..+....+.
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en 109 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN 109 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence 36789999999999999998754 3568999999999999 6779999999999999999999999888766555
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~ 230 (730)
+ .+.|+| ++.+++.++.|..|.+.|.++.+.....+....++.++|+-++.+++...+ +.|.|..+..-+.+. .
T Consensus 110 i-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---s 184 (313)
T KOG1407|consen 110 I-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---S 184 (313)
T ss_pred e-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc---c
Confidence 5 489999 999999999999999999999999888888889999999977776555554 679999888666544 7
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s 261 (730)
+..|.....++.|+|+|+++++++. +||++.
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred cccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 8889999999999999999887654 666663
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=7.6e-16 Score=173.97 Aligned_cols=181 Identities=19% Similarity=0.279 Sum_probs=158.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC--------C-C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC--------P-L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS 140 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~--------~-L-------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~ 140 (730)
...++..+++++.|++|++||.+.- + + ..-...|.|+.+||||++|+.+--|.+|+||-+.+-+
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK 541 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK 541 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence 3457788999999999999997531 1 1 1335679999999999999999999999999999999
Q ss_pred EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEE
Q 004785 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWR 218 (730)
Q Consensus 141 ~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWD 218 (730)
....+.||.-+|.|+..+| ++++++|||.|.+|++|-+.-|.|-+. +.|.+.|.++.|-|+...+++++ |+.|+-||
T Consensus 542 FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred eeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 9999999999999999999 999999999999999999999999877 57999999999999888888888 55599999
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccC
Q 004785 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS 261 (730)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s 261 (730)
...-+.+. .+.+|...|++++.+|+|.++++++.+..++.
T Consensus 621 g~kFe~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 621 GEKFEEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred hhhhhhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 88877654 88999999999999999999888877555553
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.67 E-value=3.7e-15 Score=152.37 Aligned_cols=153 Identities=16% Similarity=0.302 Sum_probs=136.9
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
.+.||.++++.+.++.+|.+|++++.|.++.||-..+|+.+-.+.||++.|+++..+- +.+.+++|+.|.+++|||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 3679999999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred CeEEEEecCCCCeEEEEEcCCCCEEEEEECCe------EEEEEcCCCc----cccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785 182 AECIGSRDFYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE----ETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 182 g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~------I~VWDl~t~~----~~~~~~~l~~h~~~V~sVaFSPdG~~Ll 251 (730)
|+++..+..+..|..+.|+++|++++...|+. |.++|++... ...+...+..+...++.+-|+|-+++|+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 99999999999999999999999888887542 9999998543 1122345666788999999999999888
Q ss_pred EEEe
Q 004785 252 LTAE 255 (730)
Q Consensus 252 atgs 255 (730)
++.+
T Consensus 164 ~Ghe 167 (327)
T KOG0643|consen 164 AGHE 167 (327)
T ss_pred EecC
Confidence 7665
No 82
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=9.1e-17 Score=180.80 Aligned_cols=173 Identities=21% Similarity=0.347 Sum_probs=153.7
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
....+.+++|+.|.++.+|....- .|.+|...|.++.|+++..+|+.|+.||+|++||++.++.+++|.+|...+.
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT 116 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc
Confidence 456688999999999999987532 4789999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEE
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV 231 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l 231 (730)
.+.|+| -+.++++|+.|..+++||++...|...++ |...+..+.|+|+|++++.++++ .++|||+..++... .+
T Consensus 117 sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef 192 (825)
T KOG0267|consen 117 SVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EF 192 (825)
T ss_pred eeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc---cc
Confidence 999999 88999999999999999999888888876 77889999999999999999975 49999999888654 56
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..|...+.++.|+|..- ++++++
T Consensus 193 ~~~e~~v~sle~hp~e~-Lla~Gs 215 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEV-LLAPGS 215 (825)
T ss_pred ccccccccccccCchhh-hhccCC
Confidence 77999999999999865 555444
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.8e-15 Score=160.24 Aligned_cols=236 Identities=13% Similarity=0.122 Sum_probs=174.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cC
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GH 148 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH 148 (730)
.+.+|+.|+++++|.+..+|+.... ++.+|..+|.-+.||||.++|++|+.|..+++||+.+|.....+. +|
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~ 311 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL 311 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc
Confidence 4568999999999999999987542 578999999999999999999999999999999999999887774 45
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
...+.+.+|.| |+..+++|+.|++|..||+.....-.--+ ....|.+++.++||+++++.+ |.+|++++..+.....
T Consensus 312 ~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 312 GFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG 390 (519)
T ss_pred CCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence 68899999999 99999999999999999997543222212 235699999999999887776 5559999988775532
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc-----------CCcc-cC-----CCCeEEE
Q 004785 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-----------PGYW-RY-----PPPVICM 284 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~-----------sG~~-~~-----p~~~V~l 284 (730)
+......|+++..|.||+++++.-. .||+....-...+.++ .|+- .+ -...|++
T Consensus 391 ----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 391 ----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred ----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 4455678999999999998877543 8888744433332221 1111 01 1356777
Q ss_pred ecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 285 AGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 285 ~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
|...++...... ++.+--+-.++|+|.+.++.+
T Consensus 467 Whr~sgkll~~L---sGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 467 WHRISGKLLAVL---SGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred EEccCCceeEee---cCCcceeeEEecCCCCHHHhh
Confidence 775555443333 334434446677776666554
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.66 E-value=4.2e-16 Score=157.93 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=167.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~-L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~~~V~sV 155 (730)
+-.+.++++.|-+-++||+-++. | -.|+.-|.+++|+.|.++|++|+.+..++|||++..+ +.+.+.+|.+.|..+
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV 149 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence 33456688889999999998873 3 3688899999999999999999999999999997753 567889999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCC
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR 235 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~ 235 (730)
-|.- ..+.|++...|++||+||.++++.++.+..+..|+++..++||++|.++....|.+||..+-+.+. .....
T Consensus 150 ~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~k~P 224 (334)
T KOG0278|consen 150 LWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SYKMP 224 (334)
T ss_pred EEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----eccCc
Confidence 9998 778888889999999999999999999999999999999999999999888889999998876543 34456
Q ss_pred CCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCC
Q 004785 236 RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDD 315 (730)
Q Consensus 236 ~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg 315 (730)
..|.+...+|+...+++.++..-+ +-.|-.+++++... ..+...|+..+.|+|||
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~-----------------------~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKV-----------------------YKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDG 279 (334)
T ss_pred cccccccccCCCceEEecCcceEE-----------------------EEEeccCCceeeec--ccCCCCceEEEEECCCC
Confidence 788999999999877776652111 11111222222221 22345577788999999
Q ss_pred CEEEE
Q 004785 316 ERISL 320 (730)
Q Consensus 316 ~rI~~ 320 (730)
..-+.
T Consensus 280 E~yAs 284 (334)
T KOG0278|consen 280 ELYAS 284 (334)
T ss_pred ceeec
Confidence 87765
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.66 E-value=4e-15 Score=152.18 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=153.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
..|..|+++++|.+..+|=...+ ++.||.+.|+|++.+-+.++|++|+.|.++++||+++|+++..++- ...|..
T Consensus 20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~ 98 (327)
T KOG0643|consen 20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKR 98 (327)
T ss_pred CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEE
Confidence 57889999999999999987554 6889999999999999999999999999999999999999999974 467999
Q ss_pred EEEccCCCCEEEEEeC-----CCcEEEEECCC-------CeEEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcC
Q 004785 155 VRFHPLNPTIIASGSL-----DHEVRLWNAST-------AECIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYN 220 (730)
Q Consensus 155 VafSP~dg~lLaSgS~-----DgtVrLWDl~t-------g~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~ 220 (730)
+.|++ ++++++.... .+.|.++|++. .++... ..+...++.+-|.|.+++|++|.++ .|.+||++
T Consensus 99 ~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 99 VDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred Eeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc
Confidence 99999 8887776543 46799999983 343444 3467899999999999999999854 59999999
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~ 269 (730)
++.+.. .....|...|+.+.|++|..++++++. +||+.+.....++.
T Consensus 178 ~g~~~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 178 TGKELV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred cCceee--echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 986533 234568889999999999998888665 66766555444443
No 86
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=163.50 Aligned_cols=201 Identities=17% Similarity=0.145 Sum_probs=165.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---------CCe
Q 004785 74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TGS 140 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---------tg~ 140 (730)
..+....|..|+.+...+.|++|.+.++. +.+|-..|+|+.|+-||.+|++||+||.|.+|++. +-+
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 34445677788888799999999999994 57999999999999999999999999999999872 346
Q ss_pred EEEEEecCCCCcEEEEEccC-CCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEE
Q 004785 141 CLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWR 218 (730)
Q Consensus 141 ~l~~l~gH~~~V~sVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWD 218 (730)
++..|..|+-+|+.+...+. -...++|+|.|.++++||+..|..+..+.....+.+++.+|-++.+++|+. +.|.+.+
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 78899999999999998872 245899999999999999999999999999999999999999999999985 5588877
Q ss_pred cCCCcc-------------ccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785 219 YNMREE-------------TSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY 274 (730)
Q Consensus 219 l~t~~~-------------~~~~~~l~~h~~--~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~ 274 (730)
+.+... ......+.+|.. .|++++.+-||..|+++.. +||+.+.++.+++.+..|-
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP 321 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence 754331 112345667877 9999999999996666554 8888877777777654444
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=2.8e-15 Score=152.94 Aligned_cols=215 Identities=17% Similarity=0.255 Sum_probs=164.8
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (730)
Q Consensus 101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (730)
..+.+|...|.+++|+-+|..|++|+.|+++++|+++..+.++ .+++|.+.|-.+.|+|...+++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3567899999999999999999999999999999998876554 45789999999999998999999999999999999
Q ss_pred CCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785 179 ASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 179 l~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvw 257 (730)
++.++++..+...+.-.-++|+|+|+++++++ ++.|.+.|.++.+... .......+..+.|+-++..++.+.+..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999998888888899999999999999 5569999998876533 333445678889998887766665433
Q ss_pred CccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecC
Q 004785 258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLR 337 (730)
Q Consensus 258 dl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ 337 (730)
.+.. ..|| .+ + . .......+..++...|+|||++++++
T Consensus 170 ~v~I-------------Lsyp--sL--------k--p-v~si~AH~snCicI~f~p~GryfA~G---------------- 207 (313)
T KOG1407|consen 170 CVEI-------------LSYP--SL--------K--P-VQSIKAHPSNCICIEFDPDGRYFATG---------------- 207 (313)
T ss_pred eEEE-------------Eecc--cc--------c--c-ccccccCCcceEEEEECCCCceEeec----------------
Confidence 2220 0111 00 0 0 11112234567788999999999972
Q ss_pred CCcceeeecccCCCCCccceeccCC
Q 004785 338 SSSSVRLLTYSTPSGQYELVLSPIA 362 (730)
Q Consensus 338 ss~~~~l~~~~~~~~q~~~~v~p~~ 362 (730)
++-.....|+....=+..+++-+|
T Consensus 208 -sADAlvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 208 -SADALVSLWDVDELICERCISRLD 231 (313)
T ss_pred -cccceeeccChhHhhhheeecccc
Confidence 222344567777777888887776
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=3e-15 Score=163.06 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=144.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCc
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTP 152 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V 152 (730)
.++..+++|++|+.+++||+.+. .+.+|++.|.|.+|+| ++.+++|||.||+|++||+++. ..+..+ .|..+|
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pV 199 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPV 199 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCce
Confidence 56788999999999999999876 5789999999999999 6779999999999999999887 555666 599999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR 229 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~ 229 (730)
..+.+-| .+.++++++.. .|++||+.+|. .+... .|...|+|+.+..++..|++++ |+.|++||+.+.+.+.
T Consensus 200 e~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~--- 274 (487)
T KOG0310|consen 200 ESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH--- 274 (487)
T ss_pred eeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE---
Confidence 9999999 88999998765 69999999654 44444 4999999999999999999999 7779999977666433
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 230 IVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 230 ~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...-.++|.+++.+|++..++++.+
T Consensus 275 -s~~~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 275 -SWKYPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred -eeecccceeeEEecCCCceEEEecc
Confidence 3445789999999999998887654
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.66 E-value=4.6e-15 Score=170.23 Aligned_cols=182 Identities=20% Similarity=0.285 Sum_probs=155.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
..+..|++|+.|+++++||..++ .+.+|...|.++... +..+++|+.|.+|++|++.++.++..+.+|.+.|.+
T Consensus 259 ~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 259 SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC 336 (537)
T ss_pred cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence 36889999999999999998886 588999999999885 567888999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC-ccccCCeEE
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR-EETSSPRIV 231 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~-~~~~~~~~l 231 (730)
+..+ +.++++|+.|++|++||+.++++++.+ +|...|.++.+... ..+++|+ |..|++||+++. +... .+
T Consensus 337 v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl 409 (537)
T KOG0274|consen 337 VQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TL 409 (537)
T ss_pred EEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hh
Confidence 9995 799999999999999999999999986 49999999988766 8889998 555999999998 5544 67
Q ss_pred ecCCCCeEEEEEccCCCeEEEEE-----eeCCccCCCcceeEecc
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLTLATS 271 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatg-----svwdl~s~~~~~~l~t~ 271 (730)
.+|..-|..+.+ .+++|+... .+||....+....+.+.
T Consensus 410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 410 QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC
Confidence 778887766655 456555543 38888888887777764
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.65 E-value=3.6e-16 Score=167.22 Aligned_cols=176 Identities=15% Similarity=0.189 Sum_probs=147.4
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
..+...|++++.|..|++|+.... .|.|-.+.|+.++|.++++.++++++|+.+++|++.+.+...+|.||++.
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk 263 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK 263 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence 346678999999999999998654 46788889999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~ 230 (730)
|+++.|.- +...+++|+.|.+|++||+.+..|.+..-....+..|..+ +..+++|- |.+|++||.+......
T Consensus 264 Vt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~---- 336 (459)
T KOG0288|consen 264 VTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR---- 336 (459)
T ss_pred eeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee----
Confidence 99999988 5556999999999999999999998887777777777765 33444444 5569999999987644
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~ 260 (730)
.....+.|+++..+++|..+++++..+.+.
T Consensus 337 sv~~gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 337 SVPLGGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred EeecCcceeeEeeccCCeEEeeecCCCcee
Confidence 334445999999999999998887655444
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.3e-16 Score=165.88 Aligned_cols=163 Identities=19% Similarity=0.273 Sum_probs=143.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--------cCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--------GHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--------gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
+.+..+.|..|||||++|++|+.||.|.+||..+|+..+.++ -+...|.|+.|+. +...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 455668899999999999999999999999999998665443 4678899999999 9999999999999999
Q ss_pred EECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 177 WNASTAECIGSRD--FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 177 WDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
|.+.+|.|+..++ |...|+++.|+.|+..+.+++ |..++|--+..++.+. .+.+|...|+...|++||.+++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCCeEEEe
Confidence 9999999999876 889999999999999988888 5559999999998765 688999999999999999999886
Q ss_pred Ee-----eCCccCCCcceeEecc
Q 004785 254 AE-----VNDLDSSESSLTLATS 271 (730)
Q Consensus 254 gs-----vwdl~s~~~~~~l~t~ 271 (730)
++ +|+..+.++..++...
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred cCCccEEEecCcchhhhhhccCC
Confidence 65 8888888887666543
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=8.1e-16 Score=156.29 Aligned_cols=174 Identities=18% Similarity=0.232 Sum_probs=143.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
.+..+++.+-|++|++|+.... ++.+|...|....|+| .+++++++|.|+++++||++.......+..|...|.+
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 4566677799999999998754 6899999999999999 7899999999999999999874444458999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEE-ecCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeE
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRI 230 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~-l~h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~t~~~~~~~~~ 230 (730)
+.|+..+.++++||+.|+.|+.||+++- .++.. .+|.-.|..++|||... +|++++.+. ++|||....... ...
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~--~e~ 273 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA--IET 273 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh--hhh
Confidence 9999889999999999999999999974 34444 35888999999999764 888888665 999999866542 235
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...|..-|..+.||+.....+++++
T Consensus 274 ~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred hhccceEEeccccccccCceeeecc
Confidence 6678899999999997655555543
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=5e-14 Score=146.21 Aligned_cols=213 Identities=15% Similarity=0.201 Sum_probs=152.9
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC-CC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 79 DARRGLASWVEAESLHHLRPKY-CP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t-~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
.....++.++-|++||+|+++. +. ...|.++|.+++|+.||..+++|+-|+.+++||+.+++ +..+..|.++|
T Consensus 38 ~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pv 116 (347)
T KOG0647|consen 38 QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPV 116 (347)
T ss_pred ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccce
Confidence 3556777899999999999876 33 45799999999999999999999999999999999995 67778899999
Q ss_pred EEEEEccCCCC--EEEEEeCCCcEEEEECCCCeEEEEecCC---------------------------------------
Q 004785 153 WVVRFHPLNPT--IIASGSLDHEVRLWNASTAECIGSRDFY--------------------------------------- 191 (730)
Q Consensus 153 ~sVafSP~dg~--lLaSgS~DgtVrLWDl~tg~~i~~l~h~--------------------------------------- 191 (730)
..+.|-+ ... .|++||.|++|+.||.+...++..+...
T Consensus 117 kt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~S 195 (347)
T KOG0647|consen 117 KTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIES 195 (347)
T ss_pred eEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence 9999987 555 8999999999999999976654443222
Q ss_pred ---CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCC---------CeEEEEEccCCCeEEEEEeeCC
Q 004785 192 ---RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR---------SLRAVHFHPHAAPLLLTAEVND 258 (730)
Q Consensus 192 ---~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~---------~V~sVaFSPdG~~Llatgsvwd 258 (730)
-.+.+|+...|.+..+.|+ .+++.|..++.+.. ...+.+.-|+. .|.+|+|+|.-..|++.|++.
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG- 273 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG- 273 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc-
Confidence 2356777777777667777 56676666665433 12334444432 467889999877777777532
Q ss_pred ccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 259 l~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
...|||-..... |. .....+.|+-..+|..+|+..+.
T Consensus 274 ----------------------tf~FWDkdar~k--Lk-~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 274 ----------------------TFSFWDKDARTK--LK-TSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred ----------------------eEEEecchhhhh--hh-ccCcCCCccceeEecCCCCEEEE
Confidence 344555222211 11 11223446667889999887654
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.65 E-value=1.5e-15 Score=154.02 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=153.4
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (730)
....+...+...|.+|+.++.+|++|++.. .+.+|++.|..+.|....+.|++.++|++||+||.++|+.++.+.
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 344555667889999999999999998764 478999999999999988899999999999999999999999886
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~ 225 (730)
-...|+++.+++ +++++.. ...+.|++||..+-..++.+.....|.+.+++|+..++++|+.+. ++.||+.+++++
T Consensus 183 -~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 183 -FNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred -cCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCcee
Confidence 446799999999 7776654 556789999999999999999999999999999998888888665 999999999876
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.. ...+|.++|.+|.|+|||...++.++
T Consensus 260 ~~--~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 260 GS--YNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ee--cccCCCCceEEEEECCCCceeeccCC
Confidence 51 24789999999999999996655554
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=1.3e-14 Score=157.09 Aligned_cols=243 Identities=17% Similarity=0.177 Sum_probs=182.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-----------C-----------CCCCCCeEEEEECCCCCEEEEEeCCC
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----------L-----------SPPPRSTIAAAFSPDGKTLASTHGDH 129 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-----------L-----------~gH~~~Vt~lafSPDG~~LaSgS~Dg 129 (730)
.+.++..+...++++++.+++|.-|+..+++ + ++|...+.+++.|+||++|++|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 4456667788999999999999999987642 1 26888899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEE
Q 004785 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV 208 (730)
Q Consensus 130 tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAs 208 (730)
.|.|||+++.+.++.+++|.+.|.+++|-. +.+.+++++.|++|++|++.....+.+ ++|.+.|.+|.-..-++.+-+
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence 999999999999999999999999999988 889999999999999999998776665 689999999998888888888
Q ss_pred EE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccC-----
Q 004785 209 AS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY----- 277 (730)
Q Consensus 209 gS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~----- 277 (730)
|+ |.++++|++..... ..+.++...+-+++|-.+.. +++++. +|++..-....+.....|....
T Consensus 304 GgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred ccccceeEEEeccccce----eeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 86 55699999944432 45778888999999987765 555443 6665544433333222222111
Q ss_pred ---------------------CCCeEEEecCCCCCC-CCcccccCCCCCCce--eeeEecCCCEEEEEec
Q 004785 278 ---------------------PPPVICMAGAHSSSH-PGLAEEVPLITPPFL--RPSFVRDDERISLQHT 323 (730)
Q Consensus 278 ---------------------p~~~V~l~d~~s~d~-~~L~~~~~~~slpil--~p~FSpDg~rI~~~~~ 323 (730)
-...+.+|.+..+-. ..+... .++.-+ ..+|+.+|++|++..+
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~---ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS---LSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee---cccccEEEEEEEccCCCEEEEecc
Confidence 013455665444321 222222 233333 6899999999998544
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.5e-15 Score=172.28 Aligned_cols=173 Identities=18% Similarity=0.276 Sum_probs=146.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCcE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V~ 153 (730)
.-..|++|+.|++|++||++.. ++.+....|.++.|+| .+..|+++.+.|.+++||++.. ++...+..|.++|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 4568999999999999999754 5678889999999999 7889999999999999999875 45678899999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCCCCeEEEEEcCCCC-EEEEEE--CC-eEEEEEcCCCccccC
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSRDFYRPIASIAFHASGE-LLAVAS--GH-KLYIWRYNMREETSS 227 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~i~~l~h~~~V~sVafSPdG~-~LAsgS--dd-~I~VWDl~t~~~~~~ 227 (730)
++.|+| +..+||||+.|+.|+|||..+++ .+..+....++..+.|-|+.. .||+++ ++ .|+|||++..-. +
T Consensus 225 c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P 301 (839)
T KOG0269|consen 225 CLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--P 301 (839)
T ss_pred EEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--c
Confidence 999999 99999999999999999998754 345566778999999999876 677776 34 499999987765 3
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...+..|...++.++|......++.+++
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeec
Confidence 4678889999999999875555555554
No 97
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.64 E-value=5.9e-15 Score=156.72 Aligned_cols=181 Identities=17% Similarity=0.240 Sum_probs=147.9
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCC-----------------------C------CCCCCCCCeEEEEECCCCCEEEE
Q 004785 74 FEAGRDARRGLASWVEAESLHHLRPKY-----------------------C------PLSPPPRSTIAAAFSPDGKTLAS 124 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t-----------------------~------~L~gH~~~Vt~lafSPDG~~LaS 124 (730)
.+.....+..+++++-|.+|++|+... + .+.||...|.++.|++ ...+++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence 344456888999999999999999321 0 2679999999999997 778999
Q ss_pred EeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe--EE--EEecCCCCeEEEEEc
Q 004785 125 THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CI--GSRDFYRPIASIAFH 200 (730)
Q Consensus 125 gS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~i--~~l~h~~~V~sVafS 200 (730)
++.|++|++||+.++..+..+.+. ..++++..+| ..+++++|+.|..|++||-+++. .+ ...+|...|.++.|+
T Consensus 277 ~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ecccceEEEEEeecccceeeeecC-cceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 999999999999999988888754 5699999999 99999999999999999999863 22 235799999999999
Q ss_pred CCCC-EEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785 201 ASGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (730)
Q Consensus 201 PdG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~ 260 (730)
|... +|++++ |+.+++||++..+. ....+.+|.+.|.++.|+..+ .+++++.+..++
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLR 413 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCCc-eEEeccCcceEE
Confidence 9876 566666 66699999998874 345788999999999998544 466655444444
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.3e-14 Score=151.34 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=137.3
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCC--------CCCeEEEEECCCCCEEE-EEeCCCeEEEEECCC---C
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPP--------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQT---G 139 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~gH--------~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~t---g 139 (730)
..-++.+.+|+.|++.+.|++|++|+.+.-..+.| -+.-+.+.|+||.+-++ +.....++++|.+.. |
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 44555667899999999999999999875433333 22457889999877544 445566888887632 2
Q ss_pred eEEE---------EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 004785 140 SCLK---------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA 209 (730)
Q Consensus 140 ~~l~---------~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsg 209 (730)
.... .-+.|.-.|..+-... ++.++++++.|.+|.|||++ |+.+..++ .....+..+.||+|++|+++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe
Confidence 2111 1134555666777776 88999999999999999998 88888776 44566788999999999988
Q ss_pred E-CCeEEEEEcCC---C--ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcc
Q 004785 210 S-GHKLYIWRYNM---R--EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD 260 (730)
Q Consensus 210 S-dd~I~VWDl~t---~--~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~ 260 (730)
+ .-.|+||..-- + ++......+.+|...|..++|+++.+.+++.+. +||.+
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 7 55599998732 2 223345678899999999999999999888776 56544
No 99
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=5e-15 Score=149.17 Aligned_cols=142 Identities=16% Similarity=0.276 Sum_probs=127.7
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
.+..|.++|.++.|+-||++.++++.|++|++|+...|.+++++.+|...|..++.+. +...|++|+.|..|.+||+.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence 3567999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785 182 AECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 182 g~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
|+.++.+. |...|+.+.|+.+...+++|+ |.++++||-+...... .+.+......|.++..+.
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVAE 155 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEecc
Confidence 99998875 999999999999999999999 6669999998876532 345566678899998864
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.4e-16 Score=177.45 Aligned_cols=170 Identities=23% Similarity=0.334 Sum_probs=151.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
....|+.|..+|+|++||++.. +|.+|...+..+.|+|-+.+.++|+.|+.+++||++...+...+++|...|..+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 5567889999999999999876 588999999999999999999999999999999999888999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEec
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR 233 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~ 233 (730)
+|+| ++.++++++.|.+++|||+..|+....|. |...+.++.|+|..-+|+.|+.++ |++||+++-+.+. ....
T Consensus 161 ~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---s~~~ 236 (825)
T KOG0267|consen 161 RLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---SGKP 236 (825)
T ss_pred eecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee---ccCC
Confidence 9999 99999999999999999999999999987 899999999999999999999555 9999999776543 2233
Q ss_pred CCCCeEEEEEccCCCeEEEE
Q 004785 234 TRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 234 h~~~V~sVaFSPdG~~Llat 253 (730)
....|.++.|+|+++.++++
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccCCceeeeecCCceeeecC
Confidence 36789999999999955543
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=5.8e-15 Score=157.92 Aligned_cols=187 Identities=18% Similarity=0.190 Sum_probs=147.0
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (730)
.+..|+..|.-+.||++|++||+++.|.+..+|++.... ..+++.+|..+|..+.|+| |.+++++|+.|..+++||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 578999999999999999999999999999999886543 4678899999999999999 999999999999999999
Q ss_pred CCCCeEEEEecCC--CCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEE
Q 004785 179 ASTAECIGSRDFY--RPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 179 l~tg~~i~~l~h~--~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPdG~~Llatg 254 (730)
+.+|.+...+.+. ..+.+++|.|||..+++|+.+ .|..||++...... ..+. ...|.+++.++||+++++.+
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----WEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----ccccccceeEEEEEcCCCcEEEEEe
Confidence 9999998887755 789999999999999999954 59999997654322 2222 24689999999999998877
Q ss_pred eeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 255 EVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 255 svwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
..- .+.+.+.....+..+..+ .-++.+.+.|.|++.+++
T Consensus 374 ~d~-----------------------~i~l~~~e~~~dr~lise----~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 374 VDK-----------------------KIRLYNREARVDRGLISE----EQPITSFSISKDGKLALV 412 (519)
T ss_pred ccc-----------------------ceeeechhhhhhhccccc----cCceeEEEEcCCCcEEEE
Confidence 322 222222222222222222 335667788889998887
No 102
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=5.1e-14 Score=159.44 Aligned_cols=182 Identities=19% Similarity=0.253 Sum_probs=152.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEe-
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKVLH- 146 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~l~- 146 (730)
...++..++.|.+.|.+.++|+... +...|.+.|..++.+||++.+++||.|.+|++||+.- |...+.++
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 4467889999999999999998865 5679999999999999999999999999999999732 22222121
Q ss_pred ------cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEE
Q 004785 147 ------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWR 218 (730)
Q Consensus 147 ------gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWD 218 (730)
.-...|.|+++|| ++++++.+-.|++|+||-+.+-+.... ++|.=+|.++..+||++.+++||.|+ |+||-
T Consensus 500 ~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 2346799999999 999999999999999999998876554 67999999999999999999999655 99999
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262 (730)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~ 262 (730)
++-+.... .+..|.+.|.+|.|-|....+++++.+..++.|
T Consensus 579 LdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 579 LDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cccchhhh---hhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 99998644 788999999999999987766666665444444
No 103
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.60 E-value=2.9e-14 Score=150.92 Aligned_cols=159 Identities=18% Similarity=0.295 Sum_probs=140.7
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
-.|..|+..|.+++.+|+.++++||+.|....||++.+|.....+.+|+..|+++.|+- ++.+|+||..+|.|+||+..
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc
Confidence 35778999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004785 181 TAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--- 255 (730)
Q Consensus 181 tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs--- 255 (730)
++.....+. .-..+.-+.|||.+.+|+.|++++ +.+|.+..... ...+.+|..++++=.|.|||+++++...
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce---eeEecCCCCCcccccccCCCceEEEEecCce
Confidence 998887765 556788899999999999999555 99999988654 3478899999999999999998887554
Q ss_pred --eCCccCCC
Q 004785 256 --VNDLDSSE 263 (730)
Q Consensus 256 --vwdl~s~~ 263 (730)
+|+..++.
T Consensus 214 i~~Wn~ktg~ 223 (399)
T KOG0296|consen 214 IIVWNPKTGQ 223 (399)
T ss_pred EEEEecCCCc
Confidence 55555443
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=149.36 Aligned_cols=217 Identities=15% Similarity=0.151 Sum_probs=156.4
Q ss_pred CCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCC----CC
Q 004785 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSP----PP 107 (730)
Q Consensus 32 sSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g----H~ 107 (730)
+..--.+|.+..+.+=. .......||+.-..--.....+-....++++.|++++.|.+|.+|+++ +++.+ ..
T Consensus 153 ~g~~l~vyk~~K~~dG~---~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGS---GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred cCCEEEEEEeeecccCC---CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 34445667776655522 222223344222111111112234456788999999999999999998 44333 34
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC---CC-----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---TG-----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---tg-----~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (730)
..-+..+.||+|++|++++.--.|++|.+- .| +.+..++||...|...+|++ +...+++.|.||+++|||+
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeec
Confidence 456788999999999999998899999862 33 24567899999999999999 9999999999999999998
Q ss_pred CCC-------eEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004785 180 STA-------ECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA 247 (730)
Q Consensus 180 ~tg-------~~i~~l-----~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG 247 (730)
.-. +.++.. ...+....++++|+|+.||.+.+..++++..++++... .....|...|.+++|+++|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~--~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP--ELEDIHSTTISSISYSSDG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch--hHHHhhcCceeeEEecCCC
Confidence 632 112211 12234457999999999999998889999998877533 3345689999999999999
Q ss_pred CeEEEEEe
Q 004785 248 APLLLTAE 255 (730)
Q Consensus 248 ~~Llatgs 255 (730)
+++++++.
T Consensus 386 ~~~atcGd 393 (420)
T KOG2096|consen 386 KYIATCGD 393 (420)
T ss_pred cEEeeecc
Confidence 98887765
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.4e-14 Score=150.74 Aligned_cols=182 Identities=17% Similarity=0.242 Sum_probs=154.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC------CC----------
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------QT---------- 138 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl------~t---------- 138 (730)
.....+.+.+.|.+-++|.++++ ++.||.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 158 ~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 158 STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 34456678899999999999987 58899999999999999999999999999999973 00
Q ss_pred --------------------C----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCC
Q 004785 139 --------------------G----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRP 193 (730)
Q Consensus 139 --------------------g----~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~ 193 (730)
+ -++..|++|.+.|.+..|-. +++.+++++.|.+..+||+.+|+.+..+ +|...
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E 316 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSE 316 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchh
Confidence 0 14567889999999999998 9999999999999999999999999886 58899
Q ss_pred eEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCccCCCc
Q 004785 194 IASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSES 264 (730)
Q Consensus 194 V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg-----svwdl~s~~~ 264 (730)
.+.++-+|..+++++++.+. .++||++.. +.....+.+|...|+++.|.-|.+ +++++ ++|+++.-..
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccC
Confidence 99999999999999999655 999999833 334568899999999999999887 56543 3888875444
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.60 E-value=5.1e-14 Score=165.17 Aligned_cols=165 Identities=22% Similarity=0.217 Sum_probs=142.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCC------C----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 004785 77 GRDARRGLASWVEAESLHHLRPKY------C----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKII 134 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t------~----------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVW 134 (730)
...+|.+|++|++|+.|.+|.... + .|.+|...|.+++|+||+.+|++++.|++|.||
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 345899999999999999999772 0 367999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------CCCCeEEEEEcCCCCEEE
Q 004785 135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLA 207 (730)
Q Consensus 135 Dl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-------h~~~V~sVafSPdG~~LA 207 (730)
|..+.+.++.+++|.+.|..+.|.| -+++|++-+.|++|++|++.+....+.+. ....+..+.|||||++|+
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 9999999999999999999999999 99999999999999999987766655542 234678899999999999
Q ss_pred EEE--CC-e--EEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785 208 VAS--GH-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 208 sgS--dd-~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
+.- .+ . +.|.+-.+.+.. ..+.+|..++..+.|+|
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNP 275 (942)
T ss_pred chhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeCh
Confidence 986 22 2 888876665532 36889999999999998
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=3.3e-14 Score=147.02 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=144.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC
Q 004785 79 DARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT 138 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~-------------------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t 138 (730)
..++.+.+|+.|+.|.+||++.. .-.+|+-.|..+.|-| |..++.+++.|.++||||+.+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 46789999999999999998742 1236888999999999 777899999999999999999
Q ss_pred CeEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCe
Q 004785 139 GSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGE-LLAVAS-GHK 213 (730)
Q Consensus 139 g~~l~~l~gH~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~-~LAsgS-dd~ 213 (730)
.+....|+ -.+.|+.-+|+|.. ..++++|..|-.|++.|+.+|.....+ +|.+.|.++.|+|..+ .|++|+ |+.
T Consensus 134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 98888886 45679999999843 458888999999999999999999887 5999999999999988 567777 556
Q ss_pred EEEEEcCCCcc------------ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 214 LYIWRYNMREE------------TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 214 I~VWDl~t~~~------------~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
|++||++.... ......-..|.+.|..++|+.||.++++.+-
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 99999986521 1101123457889999999999999887765
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=154.34 Aligned_cols=175 Identities=18% Similarity=0.185 Sum_probs=144.2
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
.....++.+++.+.|+.+++|+.... +|.+|++.|+++.|......+++|+.|.+||+||+....+.+.+- ....
T Consensus 226 d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~ 304 (459)
T KOG0288|consen 226 DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQ 304 (459)
T ss_pred eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccc
Confidence 34457788999999999999999875 688999999999999877779999999999999999988887764 2345
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~ 230 (730)
+..|..+ ...++||-.|++|++||+++..+....+..+.|+++..+++|..|.+++ |+.+.+.|+++.+... +..
T Consensus 305 cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-~~s 380 (459)
T KOG0288|consen 305 CNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-TFS 380 (459)
T ss_pred ccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-Eee
Confidence 6667775 4778999999999999999999999999888999999999999888777 7779999999876533 111
Q ss_pred Ee--cCCCCeEEEEEccCCCeEEEEEe
Q 004785 231 VL--RTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 231 l~--~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.. ......+.+.|||++.|+++++.
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred ccccccccccceeEECCCCceeeeccC
Confidence 11 12345889999999998777653
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=1.9e-14 Score=160.82 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=149.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEECCCCe--EE--------
Q 004785 80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAF-SPDGKTLASTHGDHTVKIIDCQTGS--CL-------- 142 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~laf-SPDG~~LaSgS~DgtVrVWDl~tg~--~l-------- 142 (730)
.++.|++++.|.+|++|+.... ++..|...|.|+++ -++..++|+|+-|+.|.|||+.++. .+
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 6679999999999999998754 58899999999999 7788899999999999999999872 22
Q ss_pred EEEe-cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004785 143 KVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRY 219 (730)
Q Consensus 143 ~~l~-gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl 219 (730)
..+. |+...|++++.++ .+.++++|+..+.+++||-++++.+.. .+|...|..+-.++||+.+++++ |+.|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 2233 8899999999999 889999999999999999999876554 57999999999999999998888 555999999
Q ss_pred CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.....+. .+..|...|+++..+|+=.++.+++.
T Consensus 243 gqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 243 GQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred cccceee---eEEeccCceEEEeeCCCcceEEecCC
Confidence 8887644 68889999999999998888777766
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.2e-14 Score=163.17 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=153.9
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (730)
....+.......+++++.+++|.+|....+. |..-.-++.+++|+-+|+++|.||+|..|++.+..+....+.+++
T Consensus 57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred ceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 4445555566799999999999999987653 445667899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------CCCCeEEEEEcCCC-CEEEEEECCeEEEE
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASG-ELLAVASGHKLYIW 217 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---------h~~~V~sVafSPdG-~~LAsgSdd~I~VW 217 (730)
|.++|.++.|+| .+++|++.+.||.|++||+.++.+...+. ....+.-++|+|+| ++++.+.++.|++|
T Consensus 137 h~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 137 HDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred cCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 999999999999 99999999999999999999988766542 13456778999995 56666668889999
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (730)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s 261 (730)
+....+.... .....+...+..+.|+|.|+||+++.- +|++++
T Consensus 216 ~r~~we~~f~-Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 216 SRKGWELQFK-LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccCCceehee-ecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9888876431 122233445999999999999988764 777664
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=2.7e-14 Score=154.22 Aligned_cols=174 Identities=19% Similarity=0.235 Sum_probs=146.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------C------------------CCCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC-------P------------------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI 133 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~-------~------------------L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrV 133 (730)
.+..++.|..|-.|.+||+.-. + -.+|+..|.+++|+.+ .+.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 5678999999999999998631 1 1269999999999984 468999999999999
Q ss_pred EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCCCCeEEEEEcCCCCEE-EEEEC
Q 004785 134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELL-AVASG 211 (730)
Q Consensus 134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l~h~~~V~sVafSPdG~~L-AsgSd 211 (730)
||+.+|++...+..|.+.|.++.|+|....++++|+.|++|.+.|.+.. ..-......+.|..++|+|..... +++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999999999999999999999999999999999999999999999953 223345677899999999987744 44444
Q ss_pred -CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 212 -HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 212 -d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+.|+-+|+|.... ....+..|...|.+|+++..-..++++++
T Consensus 351 dG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred CceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceeecc
Confidence 5599999998863 44578889999999999999888888765
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.9e-13 Score=137.02 Aligned_cols=177 Identities=24% Similarity=0.355 Sum_probs=146.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeC--CCCC-------CCCCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEECC
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRP--KYCP-------LSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDCQ 137 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~--~t~~-------L~gH~~~Vt~lafSP----DG~~LaSgS~-DgtVrVWDl~ 137 (730)
....+-+..+..|++|++|++|++... +++. +.-|.+.|..++|-. .|.+|++++. |..|++-|..
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~ 171 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG 171 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence 334455568899999999999988754 4553 456889999999965 3557777754 8889999999
Q ss_pred CCeEEEEEecCCCCcEEE-EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---C-----CCCeEEEEEcCCCCEEEE
Q 004785 138 TGSCLKVLHGHRRTPWVV-RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---F-----YRPIASIAFHASGELLAV 208 (730)
Q Consensus 138 tg~~l~~l~gH~~~V~sV-afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h-----~~~V~sVafSPdG~~LAs 208 (730)
+|+....+.+|++-|.++ .| ++..+++|+.|.+|++||++-..++..++ | ...|.+++.+|.|++|++
T Consensus 172 ~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 172 RGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred CCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 999999999999998765 45 67999999999999999999999888864 2 247899999999999999
Q ss_pred EECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 209 ASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 209 gSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
|-.+. ..+||++.+..++ .+..|...|+++.|+|...|+++.+
T Consensus 249 g~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred ccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEec
Confidence 98555 9999999998755 7889999999999999888777654
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.56 E-value=3e-14 Score=155.84 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=129.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCe-E
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-C 141 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----------------~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~-~ 141 (730)
.+..|...+.....+++|-... ..+||...++|.+|+|+ ...+++++.|++++|||+.+-+ .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 5555555666666777775421 35799999999999995 4578999999999999997753 3
Q ss_pred EEEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--EEE--ecCCC--CeEEEEEcCCCCEEEEEE
Q 004785 142 LKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGS--RDFYR--PIASIAFHASGELLAVAS 210 (730)
Q Consensus 142 l~~l~-----gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--i~~--l~h~~--~V~sVafSPdG~~LAsgS 210 (730)
+.+|+ +.+-.++.++|++ ++.+|+.|+.||.|.+||...... ... -.|.. .|++|+||+||++|++-+
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 44443 2334688999999 999999999999999999864322 111 23555 899999999999999987
Q ss_pred -CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 211 -GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 211 -dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
|+.+++||++..++......-......-+.++|||+.+.|+++.+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 666999999987652211122223445678899999997666554
No 114
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.55 E-value=3.2e-13 Score=141.54 Aligned_cols=140 Identities=27% Similarity=0.447 Sum_probs=117.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPD----G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa 156 (730)
...+...-.|+-+++...... ..|......++|+-| .-+||.|+.-|.|+|.|+.++++...+.+|.+.|+.|.
T Consensus 65 rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik 142 (385)
T KOG1034|consen 65 RVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIK 142 (385)
T ss_pred EEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhh
Confidence 334445555554554443211 257888889999874 33788999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR 222 (730)
Q Consensus 157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~----h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~ 222 (730)
|+|++.++++++|.|.+|++||+++..++..++ |.+.|.++.|+++|.+|++++ |..|++|+++..
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 999888999999999999999999999999975 899999999999999999998 667999999843
No 115
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.2e-12 Score=145.27 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=152.2
Q ss_pred CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004785 91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164 (730)
Q Consensus 91 gsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~l 164 (730)
..|.++|.+.. .+..|...+.+..|+|||+.|+..+. +..|++||+.+++. ..+..+.+.+...+|+| +++.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRK 259 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCE
Confidence 36788887654 36678889999999999999988864 46899999998875 44555667778899999 6654
Q ss_pred -EEEEeCCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCC
Q 004785 165 -IASGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRS 237 (730)
Q Consensus 165 -LaSgS~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~ 237 (730)
+++.+.++. |++||+.+++......+........|+|||+.|+..++. .|++||+..++.. .+..+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCc
Confidence 456666655 888899988776665566667789999999999888742 3888998765432 23334455
Q ss_pred eEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCE
Q 004785 238 LRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER 317 (730)
Q Consensus 238 V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~r 317 (730)
+....|+|||++++.+..... . ..+.+++..... ..+.... .....|.|+|||+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~----~----------------~~i~~~d~~~~~-~~~lt~~----~~~~~p~~spDG~~ 390 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGG----Q----------------FSIGVMKPDGSG-ERILTSG----FLVEGPTWAPNGRV 390 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCC----c----------------eEEEEEECCCCc-eEeccCC----CCCCCCeECCCCCE
Confidence 677899999998887653111 0 123334432221 1111111 12336899999999
Q ss_pred EEEEecCCCCC--cccceeecCCCcceee
Q 004785 318 ISLQHTEHDSG--ATRTQQSLRSSSSVRL 344 (730)
Q Consensus 318 I~~~~~~~dsg--s~~~~~~~~ss~~~~l 344 (730)
|++........ ..++..++++...+++
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 99977654432 4677777776655544
No 116
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=1.9e-13 Score=146.47 Aligned_cols=172 Identities=23% Similarity=0.325 Sum_probs=138.3
Q ss_pred EEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC--------C---
Q 004785 83 GLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------T--- 138 (730)
Q Consensus 83 ~L~Sgs~DgsIrlWd~~t~-------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~--------t--- 138 (730)
.+++++.|..|++|..... .|..|...|+++.|+|+|.+||+|++++.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 8999999999999987642 377899999999999999999999999999999765 2
Q ss_pred -----CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC
Q 004785 139 -----GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH 212 (730)
Q Consensus 139 -----g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd 212 (730)
....+.+.+|...|+.++|+| ++.++++++.|+++++||+..|+....+. |...+..++|+|-++++++-+.+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccC
Confidence 234567789999999999999 99999999999999999999999988864 88999999999999999988755
Q ss_pred e-EEEEEcCCCccccCCe----------------EEecCC----CCeEEEEEccCCCeEEEEEe
Q 004785 213 K-LYIWRYNMREETSSPR----------------IVLRTR----RSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 213 ~-I~VWDl~t~~~~~~~~----------------~l~~h~----~~V~sVaFSPdG~~Llatgs 255 (730)
. .+++++.......... ...-|+ .-.+.++|+|||..+++-++
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 4 6666554433211000 111122 23467899999998877554
No 117
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=4.5e-13 Score=139.77 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=139.9
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
..-|..|+.|..+|.|.+||+.|. .+.+|..+|++++||+||++|+++|.|..|++||+..|.+++.++ -..+|+
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~ 110 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVW 110 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccc
Confidence 457899999999999999999885 588999999999999999999999999999999999999998887 557899
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCC----CCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFY----RPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS 227 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~----~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~ 227 (730)
...|+|.+.+.++..-.+..-.+-++..++.... .... ....+..|++.|+++++|... .+.++|..+.+.+..
T Consensus 111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 9999997778887777777777777765432221 1111 122334599999999999864 599999998876542
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPdG~~Llatgsvw 257 (730)
.+.. ....|.++.|+..|+++++.+..-
T Consensus 191 ~rit--s~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 191 FRIT--SVQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred eeec--hheeeeEEEEeccCcEEEEecCCc
Confidence 2111 136789999999999888766533
No 118
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-12 Score=136.37 Aligned_cols=185 Identities=15% Similarity=0.189 Sum_probs=140.0
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 80 ARRGLASWVE--AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~--DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
....++.++. |.+||..++.+.+ +.||...|+.++.+|-+..+++++.|++|++||++..++...+.....+
T Consensus 67 ~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 67 HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 3344444444 8889999988763 7899999999999998899999999999999999988887666544333
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEEe----cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSR----DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS 226 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~l----~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~ 226 (730)
.++|.| .|-++|.+.....|+|+|++.- .+...+ +.....+.+.|+|||++|..++++. +++.|.-.+....
T Consensus 145 i~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 145 IAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred ceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 489999 8999999888889999999863 233333 2356789999999999988888665 9999998887544
Q ss_pred CCeEEecC---CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEec
Q 004785 227 SPRIVLRT---RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT 270 (730)
Q Consensus 227 ~~~~l~~h---~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t 270 (730)
.+..+ ...--+..|+||+++++.+.. +|++.++.....+.+
T Consensus 224 ---tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 224 ---TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred ---eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 23332 222357789999998887765 677765554444443
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=5.3e-14 Score=148.78 Aligned_cols=210 Identities=13% Similarity=0.120 Sum_probs=156.3
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------
Q 004785 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------------- 138 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------------------- 138 (730)
..+++|+.||.|++||+... .+..|.+.|..|++.. ..++++++|.+|+.|.+.-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 46889999999999999863 6889999999999986 6788999999999997421
Q ss_pred --------Ce-----------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEE
Q 004785 139 --------GS-----------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAF 199 (730)
Q Consensus 139 --------g~-----------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVaf 199 (730)
|+ ++..+.--...|.++.|+|....+|++|..|+.|.|+|++++++++.+-....-+.|+|
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Isw 237 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICW 237 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceec
Confidence 11 22222223456788999997778999999999999999999999998877778889999
Q ss_pred cCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCC
Q 004785 200 HASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYP 278 (730)
Q Consensus 200 SPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p 278 (730)
+|.+-.+++++.| .++.||++.-.. ......+|.+.|.+|.|||.|+-+++++-+-.++ .+....++.+
T Consensus 238 nPeafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR------If~~~~~~SR-- 307 (433)
T KOG0268|consen 238 NPEAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR------IFPVNHGHSR-- 307 (433)
T ss_pred Cccccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEE------EeecCCCcch--
Confidence 9976667777744 499999987654 3457788999999999999999877665332222 2333333321
Q ss_pred CCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 279 PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 279 ~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
+-.+... -..++.+.||-|.++|+-
T Consensus 308 ------------diYhtkR-----Mq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 308 ------------DIYHTKR-----MQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ------------hhhhHhh-----hheeeEEEEeccccEEEe
Confidence 1111110 113457899999999985
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.53 E-value=8.1e-14 Score=156.87 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=145.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
..+.+|+.|+.|+.|.+|..... .|++|+..|.|+....++. |++||.|.++++|-. +++...+++|...|++
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 45667999999999999998765 6899999999999888887 999999999999975 6667779999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR 233 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~ 233 (730)
++.-| .. .++|||.|.+|++|.- ++.++++ +|.+.|+.+++-+++.+|-++.|+.|++|++ +++. .....+
T Consensus 146 v~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~---l~~~~g 217 (745)
T KOG0301|consen 146 VASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV---LLEMHG 217 (745)
T ss_pred eeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce---eeeeec
Confidence 99988 44 8999999999999986 6666665 5999999999999988877777788999999 4554 347889
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCCccC
Q 004785 234 TRRSLRAVHFHPHAAPLLLTAEVNDLDS 261 (730)
Q Consensus 234 h~~~V~sVaFSPdG~~Llatgsvwdl~s 261 (730)
|...|+++....++..++++++...++.
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEE
Confidence 9999999997777777888887444433
No 121
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=6.5e-13 Score=144.16 Aligned_cols=183 Identities=16% Similarity=0.117 Sum_probs=145.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe------
Q 004785 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------ 140 (730)
Q Consensus 71 s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~------ 140 (730)
..+..+.+.+++.|++|..|..|.+|+.++. .+++|.+.|.+++|-..-..|++++.|++|++|+++...
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 3566777888999999999999999999886 478999999999998777789999999999999884221
Q ss_pred -----------------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785 141 -----------------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (730)
Q Consensus 141 -----------------------------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i 185 (730)
....|.+|.+.+-|++|- +...|++|+.||.|.+|++.+.+++
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCce
Confidence 112345777788888885 5788999999999999999998887
Q ss_pred EEec--C-----------CCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785 186 GSRD--F-----------YRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 186 ~~l~--h-----------~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll 251 (730)
.+.. | +..|++++..|..+++++|+.+ .|++|-+..+-....+.....-.+.|++|+|+++|++++
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEE
Confidence 7642 2 2279999999999999999955 499999987733222333444678899999999999887
Q ss_pred EEEe
Q 004785 252 LTAE 255 (730)
Q Consensus 252 atgs 255 (730)
++.+
T Consensus 442 agiG 445 (479)
T KOG0299|consen 442 AGIG 445 (479)
T ss_pred Eecc
Confidence 7654
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=2e-13 Score=141.35 Aligned_cols=199 Identities=16% Similarity=0.213 Sum_probs=154.6
Q ss_pred CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE------E----EE-----EecCCCCcEEEEEccCCCCEEE
Q 004785 103 LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC------L----KV-----LHGHRRTPWVVRFHPLNPTIIA 166 (730)
Q Consensus 103 L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~------l----~~-----l~gH~~~V~sVafSP~dg~lLa 166 (730)
...|.+.|+++...+ .|+++++|+.||.|.+||+++... + .. -.+|+-.|..+.|-|.|...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 346889999999998 899999999999999999976430 1 10 1367888999999998999999
Q ss_pred EEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC---EEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004785 167 SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (730)
Q Consensus 167 SgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~---~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVa 242 (730)
+++.|.++++||..+-+....+..++.|++-+|+|-.. ++|+|.++. |++.|+..+.... .+.+|...|.+|.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVE 195 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEE
Confidence 99999999999999999988999999999999999543 677777665 9999999998644 7899999999999
Q ss_pred EccCCCeEEEEEe------eCCccCC-CcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCC
Q 004785 243 FHPHAAPLLLTAE------VNDLDSS-ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDD 315 (730)
Q Consensus 243 FSPdG~~Llatgs------vwdl~s~-~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg 315 (730)
|+|...+++++++ .||++.. .+...+..+.+. ++ +.+. .-......+...+|+.|+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--~~-p~~~--------------~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--RP-PILK--------------TNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCc--cC-cccc--------------ccccccceeeeeeecccc
Confidence 9999999999876 8888855 333344433331 11 1111 112223355578899999
Q ss_pred CEEEEE
Q 004785 316 ERISLQ 321 (730)
Q Consensus 316 ~rI~~~ 321 (730)
..+..-
T Consensus 259 ~~l~~~ 264 (397)
T KOG4283|consen 259 RYLASC 264 (397)
T ss_pred hhhhhc
Confidence 887763
No 123
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.8e-14 Score=168.01 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=145.2
Q ss_pred CEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEE--ecC
Q 004785 82 RGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL--HGH 148 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l--~gH 148 (730)
+.|+.|.+||.|.+||...- ++..|++.|..+.|++.+ ++||+|++||.|.|||+.+-+.-..+ ..-
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 46888999999999997651 467899999999999954 59999999999999999875433333 124
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCC-EEEEEEC-Ce---EEEEEcC
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGE-LLAVASG-HK---LYIWRYN 220 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~-~LAsgSd-d~---I~VWDl~ 220 (730)
...|.+++|+.....+|++++.+|.+.|||++..+.+..+... ..+..++|||++. .|+++++ ++ |.+||+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 5679999999878889999999999999999998777665432 3488999999875 6666663 33 9999998
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEE-EEe-----eCCccCCCcceeEec
Q 004785 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLL-TAE-----VNDLDSSESSLTLAT 270 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla-tgs-----vwdl~s~~~~~~l~t 270 (730)
.... ....+..|...|.++.|++.+..++. ++. .|+..+++....+-+
T Consensus 241 ~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 241 FASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 8765 23456789999999999998854554 444 666666555544443
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=6.3e-13 Score=138.78 Aligned_cols=146 Identities=23% Similarity=0.344 Sum_probs=123.1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC--EEEEEeCCCcEEEEECC
Q 004785 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNAS 180 (730)
Q Consensus 103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~--lLaSgS~DgtVrLWDl~ 180 (730)
+..|.++|++++.+ |.++|+||.|.+|+|||+.+...+..+-.|.+.|+++.|.+ .-. .|++|+.||.|.+|+..
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 56899999999996 89999999999999999999999999999999999999987 443 89999999999999999
Q ss_pred CCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 181 TAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 181 tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..+++..+. |.+.|+.++.||.|++..+.+ |+.+++|++-.++... ...-...-+.|.|+|.|.+++..+.
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEec
Confidence 998888865 888999999999999766555 5569999998876522 2222333345999999998777664
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.5e-12 Score=132.25 Aligned_cols=241 Identities=10% Similarity=0.100 Sum_probs=165.7
Q ss_pred CCccceeeeccCcceeecCCCC----------eEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEEC
Q 004785 50 RTKHSSKRLLGETARKCSGSFS----------QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFS 116 (730)
Q Consensus 50 ~~~~~~k~~wd~~~~~~s~s~s----------~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafS 116 (730)
.+..+....||..+..+..... +++-..-.+...+++|.-|+.|+++|+.++ ++..|...|.|+.++
T Consensus 24 ~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~ 103 (323)
T KOG1036|consen 24 SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS 103 (323)
T ss_pred cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEee
Confidence 3344445557777766553322 222222234678999999999999999987 578899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE---EecCCCC
Q 004785 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG---SRDFYRP 193 (730)
Q Consensus 117 PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~---~l~h~~~ 193 (730)
+....+++||+|++|++||.+.......+. ....|.++.. .++.|+.|+.|..|.+||+++..... .-..+..
T Consensus 104 ~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyq 179 (323)
T KOG1036|consen 104 YEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQ 179 (323)
T ss_pred ccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeE
Confidence 988899999999999999998755555554 3347888888 56889999999999999999865433 2235678
Q ss_pred eEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc-CCeEEecCC---------CCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785 194 IASIAFHASGELLAVAS-GHKLYIWRYNMREETS-SPRIVLRTR---------RSLRAVHFHPHAAPLLLTAEVNDLDSS 262 (730)
Q Consensus 194 V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~-~~~~l~~h~---------~~V~sVaFSPdG~~Llatgsvwdl~s~ 262 (730)
+.++++-|++.-.++++ +++|.+=.++..++.. ....+.-|. -+|++++|+|--..+++++++.
T Consensus 180 tR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG----- 254 (323)
T KOG1036|consen 180 TRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG----- 254 (323)
T ss_pred EEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc-----
Confidence 99999999888666666 7886665555543221 122333342 2689999999887777776521
Q ss_pred CcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 263 ~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
.|.+|+....+.+... ...+..+-..+|+.||..+++
T Consensus 255 ------------------~V~~Wd~~~rKrl~q~---~~~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 255 ------------------IVNIWDLFNRKRLKQL---AKYETSISSLSFSMDGSLLAI 291 (323)
T ss_pred ------------------eEEEccCcchhhhhhc---cCCCCceEEEEeccCCCeEEE
Confidence 2333333322222111 111223446789999999998
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.2e-13 Score=138.17 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=144.5
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCC---eEEEEEe
Q 004785 78 RDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG---SCLKVLH 146 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg---~~l~~l~ 146 (730)
..-|..|++++.|++|.+|....++ ...|...|++++|.|. |-.|+.++.||+|.|.++++. ...+...
T Consensus 67 Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 67 PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 3468899999999999999988773 5589999999999994 668999999999999988664 2234557
Q ss_pred cCCCCcEEEEEccCC--C-----------CEEEEEeCCCcEEEEECCCCeEEE---EecCCCCeEEEEEcCCC----CEE
Q 004785 147 GHRRTPWVVRFHPLN--P-----------TIIASGSLDHEVRLWNASTAECIG---SRDFYRPIASIAFHASG----ELL 206 (730)
Q Consensus 147 gH~~~V~sVafSP~d--g-----------~lLaSgS~DgtVrLWDl~tg~~i~---~l~h~~~V~sVafSPdG----~~L 206 (730)
.|.-.|+++.|.|.. + +.|++|+.|+.|+||+...++-+. .-+|.+.|+.++|.|.- .+|
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 899999999999931 2 569999999999999998874322 23589999999999964 378
Q ss_pred EEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785 207 AVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (730)
Q Consensus 207 AsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~ 260 (730)
|+++ |++|.||-.+...+......+......++.+.||..|..|+.+++.+.+.
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred EEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 9998 55599998874433333444555678899999999999888777655443
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=2.9e-13 Score=152.23 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=160.1
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC----CCCCCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEECCC
Q 004785 66 CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY----CPLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQT 138 (730)
Q Consensus 66 ~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t----~~L~gH~~~Vt~lafSP---DG~~LaSgS~DgtVrVWDl~t 138 (730)
+...++....+.+.++++|++|...|.+++|++.. +.+..|...|.|+.||. ..++||+++.|+.|.|||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 45667788888889999999999999999999864 46789999999999996 457899999999999999854
Q ss_pred -CeEEEEEecCCCCcEEEEEccC------------------------------------------------CCCEEEEEe
Q 004785 139 -GSCLKVLHGHRRTPWVVRFHPL------------------------------------------------NPTIIASGS 169 (730)
Q Consensus 139 -g~~l~~l~gH~~~V~sVafSP~------------------------------------------------dg~lLaSgS 169 (730)
...+.++.+|...|++|.|.-. ..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 3444556666666666555431 447899999
Q ss_pred CCCcEEEEECCCCeEEEEec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEc
Q 004785 170 LDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFH 244 (730)
Q Consensus 170 ~DgtVrLWDl~tg~~i~~l~----h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS 244 (730)
.|..|+|||+.+|+.++.|. |.+....+..+|.|.|||+.+.++ +.++|+.+++.+. ...+|...|+.+.|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeeeec
Confidence 99999999999999999875 567778899999999999998655 9999999999765 788999999999999
Q ss_pred cCCCeEEEEEe-----eCCcc
Q 004785 245 PHAAPLLLTAE-----VNDLD 260 (730)
Q Consensus 245 PdG~~Llatgs-----vwdl~ 260 (730)
+|-++|+..++ +|.+.
T Consensus 693 nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccchhheeecCCceEEEEECc
Confidence 99999998766 66544
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.50 E-value=5.4e-13 Score=150.36 Aligned_cols=164 Identities=20% Similarity=0.236 Sum_probs=135.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVaf 157 (730)
....+++|+-|.++++|....+ .+.+|+..|.++++-|++ .++|||.|.+||+|.- ++.+++|++|++.|..+++
T Consensus 111 ~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 111 EDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred CcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence 3344899999999999998755 589999999999999988 8899999999999985 8889999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCC
Q 004785 158 HPLNPTIIASGSLDHEVRLWNASTAECIG-SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR 235 (730)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~-~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~ 235 (730)
-+ +..|+|++.||.|++||+ +|+++. ..+|..-|++++...++..+++++ |++++||+.. +.. ..+.-..
T Consensus 188 l~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~---q~I~lPt 259 (745)
T KOG0301|consen 188 LD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV---QVITLPT 259 (745)
T ss_pred ec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE---EEEecCc
Confidence 86 557899999999999999 555554 567999999999777777777777 5559999876 222 2333344
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 004785 236 RSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 236 ~~V~sVaFSPdG~~Llatgs 255 (730)
..|+++.+-++|. ++++++
T Consensus 260 tsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 260 TSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred cceEEEEEeeCCC-EEEecc
Confidence 5899999999999 566555
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.1e-12 Score=151.62 Aligned_cols=173 Identities=18% Similarity=0.267 Sum_probs=140.9
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
...+...+|..++.|++|-.|++.+.... .+.+|.++|.++.|+|++.+||+.+-||.|++||+.++.+...+.+-
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 33445568889999999999999998765 58899999999999999999999999999999999999877666432
Q ss_pred --------CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEE
Q 004785 149 --------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYI 216 (730)
Q Consensus 149 --------~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgS-dd~I~V 216 (730)
...+.-++|+| ++..++....|++|++++..+.+....+. +...+..+.|+|+|+|||+++ ++.|.|
T Consensus 180 ~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~v 258 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILV 258 (933)
T ss_pred CccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEE
Confidence 34466799999 66666667789999999999988877653 334599999999999999999 666999
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
||+++-+. ..-...|.+++|.|+...+-..
T Consensus 259 Wnv~t~~~-------~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 259 WNVDTHER-------HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred Eecccchh-------ccccceeEEEecCCCCCeeEEE
Confidence 99988321 2335689999999998855443
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.49 E-value=5.6e-12 Score=130.94 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=129.9
Q ss_pred cCCCEEE-EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCcE
Q 004785 79 DARRGLA-SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 79 d~g~~L~-Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
.+++.++ +...++.|++||+.+.+.. .+...+.+++|+|||+++++++.++ .+.+||..+++.+..+.. ...+.
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~ 160 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPR 160 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCcc
Confidence 3445554 4556899999999875321 2233578899999999999988765 577889998887665543 23467
Q ss_pred EEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCC------C--CeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004785 154 VVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFY------R--PIASIAFHASGELLAVAS--GHKLYIWRYNMR 222 (730)
Q Consensus 154 sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~------~--~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~ 222 (730)
.++|+| +++++ +++..|+.|++||+.+++.+..+... . ....++|+|+|++++++. ++.|.+||+++.
T Consensus 161 ~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 161 FAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 899999 66666 55567999999999998876654311 1 235688999999866553 456999999876
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCcceeE
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTL 268 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~~l 268 (730)
+... ...+...+.+++|+|+|++|+++.. +|++..++....+
T Consensus 240 ~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 240 EVLD----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred cEEE----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6432 2234457899999999998877642 6666654444444
No 131
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=9.9e-12 Score=139.98 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=146.2
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL 165 (730)
.|.+||.+.. .+..+...+...+|||||+.|+..+. +..|++||+.+|+... +....+.+..++|+| +++.|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEE
Confidence 5888887643 35567778999999999999987653 4579999998886432 222333455789999 66655
Q ss_pred E-EEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEEecCCCCe
Q 004785 166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 166 a-SgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd--~--I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
+ +.+.++ .|++||+.+++..........+....|+|||+.|+..++. . |+++|+.+++.. .+.......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 5 445555 5999999998877666666677889999999999888753 2 666676665432 233344456
Q ss_pred EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI 318 (730)
....|+|||++++.+...... ..+.+++..++....+. .. .....|.|+|||+.|
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~--------------------~~I~~~dl~~g~~~~Lt-~~----~~~~~p~~SpDG~~i 388 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQ--------------------QHIAKQDLATGGVQVLT-DT----FLDETPSIAPNGTMV 388 (429)
T ss_pred cCEEECCCCCEEEEEEccCCC--------------------ceEEEEECCCCCeEEeC-CC----CCCCCceECCCCCEE
Confidence 678999999988876642210 12344443333222111 10 112368999999999
Q ss_pred EEEecCCCCCcccceeecCCCcceeee
Q 004785 319 SLQHTEHDSGATRTQQSLRSSSSVRLL 345 (730)
Q Consensus 319 ~~~~~~~dsgs~~~~~~~~ss~~~~l~ 345 (730)
++...+.. ...++..++++....+|+
T Consensus 389 ~~~s~~~~-~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 389 IYSSSQGM-GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred EEEEcCCC-ceEEEEEECCCCCeEECc
Confidence 99666433 334666677666666554
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.47 E-value=1.5e-12 Score=149.24 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=152.8
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~ 144 (730)
...+....-|...+.|...|.|.+|+++.+ .+ ..|.+.|++++...-++.+++++.+|.+++||+.+...+..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 455555667888999999999999999987 23 48999999999998899999999999999999998887777
Q ss_pred EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR 222 (730)
Q Consensus 145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~ 222 (730)
++ -...+.++..+. ...+++.+..|-.|+++|..+.+.++.+. |...|++++|||||++|++++ |..|++||+.++
T Consensus 531 l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 531 LR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 75 345678888888 88899999999999999999998888875 999999999999999999999 566999999999
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..+. ...-+....++.|+|+|.+|+++-.
T Consensus 609 ~lID----~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 609 TLID----GLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ceee----eEecCCcceeeEECCCCCEEEEEEe
Confidence 8755 3445778899999999997766543
No 133
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=9.9e-12 Score=139.96 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=146.6
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-E
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-I 164 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-l 164 (730)
.|.+||.... .+..+...+.+..|+|||+.|+..+. +..|++||+.+++.. .+....+....++|+| +++ +
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCCEE
Confidence 5888987644 36677788999999999999998875 347999999888753 3444455566789999 565 5
Q ss_pred EEEEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEEecCCCCe
Q 004785 165 IASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 165 LaSgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd--~--I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
+++.+.++ .|++||+.+++......+.......+|+|||+.|+..++. . |+++|+.+++... +..+....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence 55666665 5999999998876655555556788999999999888742 2 7777776654322 22233445
Q ss_pred EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI 318 (730)
..++|+|||++++.+.... . . ..+.+++..++....+... . ....|.|++||+.|
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~----~----------~------~~I~v~d~~~g~~~~Lt~~----~-~~~~p~~spdG~~i 393 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSG----G----------Q------YRIAVMDLSTGSVRTLTPG----S-LDESPSFAPNGSMV 393 (433)
T ss_pred cCEEECCCCCEEEEEECCC----C----------c------eeEEEEECCCCCeEECCCC----C-CCCCceECCCCCEE
Confidence 5789999999888765311 0 0 1344444433332222111 0 12257999999999
Q ss_pred EEEecCCCCCcccceeecCCCcceee
Q 004785 319 SLQHTEHDSGATRTQQSLRSSSSVRL 344 (730)
Q Consensus 319 ~~~~~~~dsgs~~~~~~~~ss~~~~l 344 (730)
++..... ....++..++++....++
T Consensus 394 ~~~s~~~-g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 394 LYATREG-GRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred EEEEecC-CceEEEEEECCCCceEEc
Confidence 9876652 234566666665444444
No 134
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.46 E-value=7.1e-13 Score=139.00 Aligned_cols=174 Identities=23% Similarity=0.325 Sum_probs=134.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCc
Q 004785 81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRTP 152 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~~~V 152 (730)
.-.++.++.-|.|++.|...+ .+.+|...|+.+.|.|+ .++++++|.|.+|++||+++..++..| .+|.+.|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 457778888999999998865 47899999999999995 578999999999999999999999887 5799999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeE------E----------------E---Ee----cCC------------
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC------I----------------G---SR----DFY------------ 191 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~------i----------------~---~l----~h~------------ 191 (730)
.++.|++ ++++++|++.|.++++|++...+. . . .+ -|.
T Consensus 185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ 263 (385)
T KOG1034|consen 185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF 263 (385)
T ss_pred EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence 9999999 889999999999999999973210 0 0 00 000
Q ss_pred ------------------------------------------CCeEE--EEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004785 192 ------------------------------------------RPIAS--IAFHASGELLAVASG-HKLYIWRYNMREETS 226 (730)
Q Consensus 192 ------------------------------------------~~V~s--VafSPdG~~LAsgSd-d~I~VWDl~t~~~~~ 226 (730)
..|.- .+|+|.++.||.|.. ++|++||++..+...
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 01122 345677788888884 559999998877633
Q ss_pred CCeEE-ecCCCCeEEEEEccCCCeEEEEEe
Q 004785 227 SPRIV-LRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 227 ~~~~l-~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..... ......|+..+|+.||..|++.++
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeC
Confidence 22222 223568999999999998888776
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.45 E-value=1.6e-12 Score=145.48 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=142.5
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004785 70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG 139 (730)
Q Consensus 70 ~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg 139 (730)
|...+.+.......|+.+.+||.|.++|.+.. ....|...|.++.|-|-...|++++.|.++++||++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 44455556667788999999999999997653 23479999999999996678999999999999999999
Q ss_pred eEEEE--EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--------------------EEE--------ec
Q 004785 140 SCLKV--LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--------------------IGS--------RD 189 (730)
Q Consensus 140 ~~l~~--l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--------------------i~~--------l~ 189 (730)
+++.. +.||.+.|.+++|.|.+...|++|+.||.|.|||++-... .+. ..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 88765 8999999999999999999999999999999999874321 000 11
Q ss_pred CCCCeEE---EEEcCCCCEEEEEE--CCeEEEEEcCCCccccC-----CeEEecC---CCCeEEEEEccCCCeEEEEEee
Q 004785 190 FYRPIAS---IAFHASGELLAVAS--GHKLYIWRYNMREETSS-----PRIVLRT---RRSLRAVHFHPHAAPLLLTAEV 256 (730)
Q Consensus 190 h~~~V~s---VafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~-----~~~l~~h---~~~V~sVaFSPdG~~Llatgsv 256 (730)
+...|.+ +.+.-|...||+++ |+.|+|||+++...... ...+..| ...+.++.....|.++++++.+
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 2234444 55667888899888 44599999987643211 0111222 3357788888889999998874
Q ss_pred C
Q 004785 257 N 257 (730)
Q Consensus 257 w 257 (730)
+
T Consensus 293 ~ 293 (720)
T KOG0321|consen 293 N 293 (720)
T ss_pred C
Confidence 3
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.45 E-value=2.6e-12 Score=139.39 Aligned_cols=185 Identities=19% Similarity=0.192 Sum_probs=143.6
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE--EEEE
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC--LKVL 145 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~--l~~l 145 (730)
-......+++|.+.|.|.+||+.+. .+..|..+|.++.|+| +-..+++.|.||+|++-|++++.. +..+
T Consensus 196 Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 196 PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL 275 (498)
T ss_pred ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence 3456688999999999999999532 3678999999999999 667899999999999999988643 3333
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEE-ecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCC
Q 004785 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNM 221 (730)
Q Consensus 146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~-l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t 221 (730)
+.....+..+.|+. +...++.+..=|...+||++++.. ... .-|...|++++++|... +|++++ |++++|||++.
T Consensus 276 ~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 276 DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred CccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence 33555677888888 555666666666999999998754 222 34778999999999775 778888 66699999987
Q ss_pred CccccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785 222 REETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262 (730)
Q Consensus 222 ~~~~~~-~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~ 262 (730)
-..... ......|...|.+..|||+|-.|++++-.+.++..
T Consensus 355 l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 355 LRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 654332 34567799999999999999889988876655533
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.45 E-value=1.7e-12 Score=144.47 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=168.7
Q ss_pred CCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC--------C
Q 004785 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY--------C 101 (730)
Q Consensus 30 ~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t--------~ 101 (730)
++.|||+|.-....++|.+..++......-..+.+..+.+| +.+.....| +++.+.-+.. +
T Consensus 5 F~aSKfknt~p~vPk~E~~i~di~vG~~~~~~n~I~aS~~f--lAFn~e~~G---------~~lgvlPl~~~Gr~~r~i~ 73 (1012)
T KOG1445|consen 5 FAASKFKNTTPKVPKKEETIFDIPVGNLSCTNNGIHASADF--LAFNIEGEG---------GKLGVLPLTAKGRRTRDIG 73 (1012)
T ss_pred cchhhcccCCCCCCchhhheeecccccccccCCCcccccce--EEEeecCCC---------ceEEEEeccccCccccccc
Confidence 77899999999999999888877766543333332222222 222221222 2333333322 2
Q ss_pred CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE-----EEEecC-CCCcEEEEEccCCCCEEEEEeCCCcE
Q 004785 102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-----KVLHGH-RRTPWVVRFHPLNPTIIASGSLDHEV 174 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l-----~~l~gH-~~~V~sVafSP~dg~lLaSgS~DgtV 174 (730)
.|.+|...|+++.|+| +..+||+||.|..|+||.+..|-.- ...-+| .-.|.++.|||....++++ +..|++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v 152 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSV 152 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceE
Confidence 4778999999999999 7779999999999999999754211 112234 3457899999955555555 557899
Q ss_pred EEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCC-CeEEEEEccCCCeEE
Q 004785 175 RLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRR-SLRAVHFHPHAAPLL 251 (730)
Q Consensus 175 rLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~-~V~sVaFSPdG~~Ll 251 (730)
+|||+.+++.+..+ +|.+.|.+..|+.||.+|++++.++ |+|||.+..... .....+|.+ .-..+.|-.+-.+|+
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p--iQ~te~H~~~rdsRv~w~Gn~~rli 230 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP--IQTTEGHGGMRDSRVLWAGNWERLI 230 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc--cccccccccchhheeeeccchhhhh
Confidence 99999999887775 5899999999999999999999666 999999876542 234456643 234566765555566
Q ss_pred EEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785 252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL 320 (730)
Q Consensus 252 atgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~ 320 (730)
+++- . ......+.++|...- ...+.+..-+.+..++.|-|.||.+.+.+
T Consensus 231 sTGF-~------------------~~R~reV~~~Dtr~f-~~p~~tleld~stGvLiPl~DpDt~llfL 279 (1012)
T KOG1445|consen 231 STGF-T------------------TKRIREVRAYDTRKF-GAPVHTLELDSSTGVLIPLYDPDTRLLFL 279 (1012)
T ss_pred hccc-c------------------hhhheeeeeeecccc-CCcceeEEeecccceEeeeecCCCceEEE
Confidence 5542 0 001113333332211 11122223344667889999999988887
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.45 E-value=2.1e-12 Score=137.97 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=146.4
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-------E-EEecCCCCeEEEEEcCCCC-EEEEEE-CCe
Q 004785 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------I-GSRDFYRPIASIAFHASGE-LLAVAS-GHK 213 (730)
Q Consensus 144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-------i-~~l~h~~~V~sVafSPdG~-~LAsgS-dd~ 213 (730)
.+.||+++|..++|+|.+.+.++|||.|.+|.||++..+.. + ...+|...|.-+.|||.-. .|++++ |..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45799999999999999999999999999999999976532 2 2346999999999999654 555555 667
Q ss_pred EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCC
Q 004785 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH 288 (730)
Q Consensus 214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~ 288 (730)
|.+|++.+++... ...|..-|+++.|+.||.++++++. +||.+.+.....-..+.|.. +..++++.+
T Consensus 156 v~iWnv~tgeali----~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k--~~Raifl~~-- 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALI----TLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK--PARAIFLAS-- 227 (472)
T ss_pred EEEEeccCCceee----ecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC--cceeEEecc--
Confidence 9999999998643 3459999999999999999999987 45555444433333444442 334555544
Q ss_pred CCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCC
Q 004785 289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPS 351 (730)
Q Consensus 289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~ 351 (730)
..++..+||.-+.|.+..++.........-+++++|.++.|+||+..+
T Consensus 228 ---------------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 228 ---------------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred ---------------CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence 135578999999999999999999888999999999999999999866
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=1.8e-12 Score=140.36 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=138.2
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE-EEEecC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGH 148 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH 148 (730)
.+....+..|+||+.|++|++||+.++ .+..|.+.|.++.|+| ....|++|+.|++|.+.|++..... ..++ -
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~ 328 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-F 328 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-e
Confidence 344567789999999999999999987 3667999999999999 6789999999999999999853222 2233 3
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEec-CCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCcc
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l~-h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~t~~~ 224 (730)
.+.|-.++|+|.....++++..||+|+-+|++.. +++..+. |.+.|.++++++.-. +|++++.++ |++|++.....
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 4668999999988889999999999999999975 7777764 999999999998665 677777555 99999976543
Q ss_pred ccCCeEEecC---CCCeEEEEEccCCCeEEEEEe
Q 004785 225 TSSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 225 ~~~~~~l~~h---~~~V~sVaFSPdG~~Llatgs 255 (730)
.. ...| -+...+.++.|+-.++++.++
T Consensus 409 ~~----v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 409 KS----VKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred cc----cccccccccceeecccCCCcceEEEecC
Confidence 11 2222 123677788888887777665
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.44 E-value=6e-12 Score=144.33 Aligned_cols=213 Identities=14% Similarity=0.134 Sum_probs=172.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ecC
Q 004785 82 RGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL---HGH 148 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~~----------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH 148 (730)
..+.....+...+.|+....+ ++.-...+++++.++.|++.+.|...|+|-+|++++|-....| ..|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 344445556668888876542 3334578999999999999999999999999999999988888 589
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~ 227 (730)
.++|..++... -++.+++++.||-+++||..+...+..+.....+..+..+.....++.+.++. |+++|+.+.+.++
T Consensus 493 ~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR- 570 (910)
T KOG1539|consen 493 KGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR- 570 (910)
T ss_pred cCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-
Confidence 99999999987 78899999999999999999999888888889999999999999999998776 9999999988755
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004785 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (730)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil 307 (730)
.+.+|.+.|++++|||||+++++++.+. .+.+||..++..+... ....++.
T Consensus 571 --~f~gh~nritd~~FS~DgrWlisasmD~-----------------------tIr~wDlpt~~lID~~----~vd~~~~ 621 (910)
T KOG1539|consen 571 --EFWGHGNRITDMTFSPDGRWLISASMDS-----------------------TIRTWDLPTGTLIDGL----LVDSPCT 621 (910)
T ss_pred --HhhccccceeeeEeCCCCcEEEEeecCC-----------------------cEEEEeccCcceeeeE----ecCCcce
Confidence 7889999999999999999998877422 2333443333222211 1345778
Q ss_pred eeeEecCCCEEEEEecCC
Q 004785 308 RPSFVRDDERISLQHTEH 325 (730)
Q Consensus 308 ~p~FSpDg~rI~~~~~~~ 325 (730)
...|||.|..++..|-+.
T Consensus 622 sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred eeEECCCCCEEEEEEecC
Confidence 899999999999866553
No 141
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-11 Score=139.55 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=111.9
Q ss_pred CCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeE--EEEEecCCCCcEEEEEccCC
Q 004785 90 AESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN 161 (730)
Q Consensus 90 DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~--l~~l~gH~~~V~sVafSP~d 161 (730)
+..|.+||.+.. .+..|...+....|||||++|+..+.+ ..|++||+.+++. +..+.+| ...++|+| +
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D 258 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D 258 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence 468999997654 366788889999999999999988754 4799999988864 3334443 44689999 7
Q ss_pred CCEEEEE-eCCCcEE--EEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEecCCC
Q 004785 162 PTIIASG-SLDHEVR--LWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRR 236 (730)
Q Consensus 162 g~lLaSg-S~DgtVr--LWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~~h~~ 236 (730)
++.|+.+ +.++.+. +||+.+++......+...+....|+|||+.|+..++ +...||+++...... ....+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC
Confidence 7766654 5677655 557777776666666667889999999998887774 447777765433211 1223333
Q ss_pred CeEEEEEccCCCeEEEEEe
Q 004785 237 SLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 237 ~V~sVaFSPdG~~Llatgs 255 (730)
....|+|||+++++++.
T Consensus 336 --~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 336 --YSAQISADGKTLVMING 352 (429)
T ss_pred --CCccCCCCCCEEEEEcC
Confidence 45789999998877653
No 142
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=1.7e-12 Score=135.33 Aligned_cols=190 Identities=17% Similarity=0.264 Sum_probs=150.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~ 160 (730)
...|++..+++++..-- ...+.||...|..++-......+.+++.|.+.+||.+++|+|+..|.||.+.|++|+|++
T Consensus 124 tsrivssFk~~t~~~~l--vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~- 200 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKFRL--VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN- 200 (481)
T ss_pred cchheeeecCCceeEee--hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-
Confidence 34566666666643221 125789999999999988777999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEC------CC------------------------------CeEE-----EEecCCCCeEEEEE
Q 004785 161 NPTIIASGSLDHEVRLWNA------ST------------------------------AECI-----GSRDFYRPIASIAF 199 (730)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl------~t------------------------------g~~i-----~~l~h~~~V~sVaf 199 (730)
.+.++++++.|++..||.. .. +..+ ...+|...|.+..|
T Consensus 201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW 280 (481)
T KOG0300|consen 201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW 280 (481)
T ss_pred ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence 9999999999999999962 11 0001 11246777888889
Q ss_pred cCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785 200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG 273 (730)
Q Consensus 200 SPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG 273 (730)
-..|+.+++++.++ ..+||+.+++.+. .+.+|....+.++-+|..+.+++++. +||++ +.......+.|
T Consensus 281 L~gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 281 LAGGQQMVTASWDRTANLWDVETGEVVN---ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hcCcceeeeeeccccceeeeeccCceec---cccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 99999999999555 9999999999766 78899999999999999996666554 77777 45556666777
Q ss_pred cccCC
Q 004785 274 YWRYP 278 (730)
Q Consensus 274 ~~~~p 278 (730)
|....
T Consensus 356 HtdtV 360 (481)
T KOG0300|consen 356 HTDTV 360 (481)
T ss_pred cccce
Confidence 76533
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.43 E-value=2.3e-12 Score=140.58 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=142.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCcEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWV 154 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~~~V~s 154 (730)
...++++|+..+.|++||++.. .+++|+..|+++.++-...+||+++..|.|.|..+.++.....|+.. ...|.-
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 3478999999999999999854 58899999999999999999999999999999999999888888655 345668
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~ 230 (730)
+.|+|....+|.+++.+|.|.+||+....++..+ .|..+...|+|+|... +|++.+ |.+|++||.+......
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---- 245 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---- 245 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----
Confidence 9999966667788999999999999887777664 4888999999999877 555555 6679999998665433
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...-..+...|+|+++|.+|+++..
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eeeecCCcceeeecCCceEEEeecC
Confidence 2233457899999999998877654
No 144
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.42 E-value=1.1e-11 Score=139.75 Aligned_cols=191 Identities=16% Similarity=0.209 Sum_probs=148.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC---------C--------------------------------CCCCCCeEEEEECC
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP---------L--------------------------------SPPPRSTIAAAFSP 117 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~---------L--------------------------------~gH~~~Vt~lafSP 117 (730)
-....+++++.|++|++|++..|+ + -...-.+.+++.||
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 356789999999999999987531 0 12334689999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEcc--CCCCEEEEEeCCCcEEEEECCCCe-EEEEe-c----
Q 004785 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP--LNPTIIASGSLDHEVRLWNASTAE-CIGSR-D---- 189 (730)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP--~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~---- 189 (730)
||++||+|..-|+++|||+...+.+..+..|...|.|+.|+- ...++|++++.|.-|.++|+...- +++++ +
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 999999999999999999999998999999999999999984 135789999999999999985321 00000 0
Q ss_pred ---------------------------------------------CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785 190 ---------------------------------------------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (730)
Q Consensus 190 ---------------------------------------------h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~ 223 (730)
.+..++.++..|..+++++++.++ |+|||+..++
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 012467888899999999999655 9999999998
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~ 269 (730)
..+...-..+|.+....|...|.|-|+++++. +.|+.++++.....
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 76633333456778889999999999999887 45666666655444
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=4.7e-11 Score=134.75 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=146.8
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (730)
...+|.......|+.+-.++.|.+|++... .+.+ ..+.|.+++|+ ++..|++.+-+|.|.-||+.+++.+..+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence 344455556677999999999999999865 2334 45679999999 5667888889999999999999999999
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC
Q 004785 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (730)
Q Consensus 146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t 221 (730)
..-.+.|++++.+| .+..++.|+.||.++++++..++.... +. .+++|.+++|+|++..|+.|+.|+ |++||+..
T Consensus 107 d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 107 DSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred cCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 99999999999999 889999999999888899888877655 33 458999999999999999999666 99999998
Q ss_pred CccccCCe----EEec-CCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785 222 REETSSPR----IVLR-TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (730)
Q Consensus 222 ~~~~~~~~----~l~~-h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~ 263 (730)
+....... .+.. -..-|++|.|-.++. |+++.+ .||...+.
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcc
Confidence 87643100 1111 233578888887776 555332 55554333
No 146
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.40 E-value=1.4e-11 Score=128.21 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=137.7
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCCeEEEEE
Q 004785 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVL 145 (730)
Q Consensus 71 s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l 145 (730)
..+-..-.+++..+++++.|+.+++||+.+++ +..|.++|.++.|-+... .|++||.|.+||.||.+...++.++
T Consensus 74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 34555567888999999999999999999884 668999999999988554 8999999999999999876544433
Q ss_pred ec-------------------------------------C----CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785 146 HG-------------------------------------H----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (730)
Q Consensus 146 ~g-------------------------------------H----~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 184 (730)
.- + +-.+.+|+..+ +.+..+.|+-.|.+-|..+..+..
T Consensus 154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCc
Confidence 21 1 12356677777 666667788888888887776533
Q ss_pred EEE--ec-CC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785 185 IGS--RD-FY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 185 i~~--l~-h~---------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll 251 (730)
... +. |. ..|++|+|+|.-..|++++ |+.+.+||-+....+. ....|..+|++..|+.+|.+++
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk---~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK---TSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh---ccCcCCCccceeEecCCCCEEE
Confidence 222 21 22 2578899999877777766 6669999988776544 5567899999999999999776
Q ss_pred EEEe-eC
Q 004785 252 LTAE-VN 257 (730)
Q Consensus 252 atgs-vw 257 (730)
-+.+ +|
T Consensus 310 YA~gYDW 316 (347)
T KOG0647|consen 310 YALGYDW 316 (347)
T ss_pred EEeeccc
Confidence 5544 55
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.40 E-value=2.6e-11 Score=132.86 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=137.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-------------
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC------------- 141 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~------------- 141 (730)
..+..+++|..+|.|.+|+..+++ ...|.+.|.+++.-.+|.+|- |+.|+.|..||- +.+.
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~-~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD-NYRKLRETELPEQFGPI 332 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccc-cccccccccCchhcCCe
Confidence 455678899999999999998763 348999999999999997665 999999999984 1110
Q ss_pred ----------------------------EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCC
Q 004785 142 ----------------------------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP 193 (730)
Q Consensus 142 ----------------------------l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~ 193 (730)
.....+|....+.++.+| ..+++++++.|+.++||+ ..+.+.......+
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP 409 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCc
Confidence 112247888899999999 999999999999999999 6677777778889
Q ss_pred eEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 004785 194 IASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (730)
Q Consensus 194 V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsv 256 (730)
+.++.|+|.| .||.|+ .+...|.|..+...+. +.....+++.+.|+|+|.+++.++..
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~----~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVT----IHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccceeEE----EEecCCceEEEEEcCCCCEEEEecCC
Confidence 9999999999 899998 5669999998865433 33338899999999999988777653
No 148
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.8e-11 Score=133.06 Aligned_cols=218 Identities=16% Similarity=0.123 Sum_probs=136.6
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL 165 (730)
.|.++|.+.. .+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+| +++.+
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~l 254 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTL 254 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 4666666432 356778889999999999999988753 469999999887543 433445567899999 66555
Q ss_pred -EEEeCCCcEEEE--ECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEc--CCCccccCCeEEecCCCCe
Q 004785 166 -ASGSLDHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRY--NMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 166 -aSgS~DgtVrLW--Dl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl--~t~~~~~~~~~l~~h~~~V 238 (730)
++.+.++...|| |+.++.......+........|+|||+.|+..++ +...||.+ ..+... .+.......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~~ 330 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSYN 330 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCCc
Confidence 567778775555 5555554444444555667899999998887774 33555544 443321 222223334
Q ss_pred EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI 318 (730)
....|+|||++++.+..... . ..+.+++...+....+... . ....|.|+|||+.|
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g---------------~-----~~I~v~d~~~g~~~~lt~~-~----~~~~p~~spdg~~l 385 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG---------------A-----FKLYVQDLATGQVTALTDT-T----RDESPSFAPNGRYI 385 (427)
T ss_pred CceEECCCCCEEEEEEccCC---------------c-----EEEEEEECCCCCeEEccCC-C----CccCceECCCCCEE
Confidence 56789999999887654211 0 1345555444332222111 0 12368999999999
Q ss_pred EEEecCCCCCcccceeecCCCcc
Q 004785 319 SLQHTEHDSGATRTQQSLRSSSS 341 (730)
Q Consensus 319 ~~~~~~~dsgs~~~~~~~~ss~~ 341 (730)
++..+... ...++..+.++...
T Consensus 386 ~~~~~~~g-~~~l~~~~~~g~~~ 407 (427)
T PRK02889 386 LYATQQGG-RSVLAAVSSDGRIK 407 (427)
T ss_pred EEEEecCC-CEEEEEEECCCCce
Confidence 99776543 23455555554333
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=3.3e-12 Score=137.06 Aligned_cols=145 Identities=22% Similarity=0.357 Sum_probs=120.3
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCC---------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 107 ~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg---------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
..+|..+.|.++.. +|+||+.|..|+||-+..+ +.+..+..|...|+++.|+| ++++++||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 35799999999665 9999999999999988543 23456678999999999999 9999999999999999
Q ss_pred EECC--------C-----C---eEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCe
Q 004785 177 WNAS--------T-----A---ECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 177 WDl~--------t-----g---~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
|-.. + . ...+. ..|...|..++|+||++++++++ ++.+++||+..+.... ....|...|
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence 9765 2 1 11112 34888999999999999999999 5669999999998655 678899999
Q ss_pred EEEEEccCCCeEEEEEe
Q 004785 239 RAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgs 255 (730)
..++|.|-++++++-+.
T Consensus 169 qgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSS 185 (434)
T ss_pred ceeecchhhhhhhhhcc
Confidence 99999999998776443
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.39 E-value=1.4e-12 Score=142.30 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=146.6
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
..-+.+..+++..||.|.+||+... +|.||++.+.||.+++||..|-+|+-|.+|+-||+++++.+.... ....|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhh
Confidence 3446677889999999999999875 689999999999999999999999999999999999988765543 34569
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l 231 (730)
.++..+| .+++++.|-.++.|.|......+......|..-|.++.|.+.|+++++.+.+. +..|...-+..+- .
T Consensus 596 fSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF----q 670 (705)
T KOG0639|consen 596 FSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF----Q 670 (705)
T ss_pred eecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee----e
Confidence 9999999 99999999999999998887777666677999999999999999999888555 9999887775422 3
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
......|.++.+|-|.++|+++++
T Consensus 671 skE~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 671 SKESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ccccCcceeeeeccCceEEEecCC
Confidence 345678999999999998877654
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.36 E-value=3e-11 Score=135.42 Aligned_cols=182 Identities=14% Similarity=0.190 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe------------
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS------------ 140 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~------------ 140 (730)
+...|++.+.|.+++.||++..+ +.||.+.|.+++|.| |...|++|+.||.|.|||++-..
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 77799999999999999998752 679999999999999 56689999999999999984321
Q ss_pred ---------------EEEEEecCCCCcEE---EEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEec---------C--
Q 004785 141 ---------------CLKVLHGHRRTPWV---VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD---------F-- 190 (730)
Q Consensus 141 ---------------~l~~l~gH~~~V~s---VafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l~---------h-- 190 (730)
.+...+.|...|.+ +-+.. |...|++++. |+.|++||+++.......+ +
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence 11122334444444 44445 7888998887 9999999999865433211 2
Q ss_pred -CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCC--eEEEEEccCCCeEEEEEe-----eCCccC
Q 004785 191 -YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRS--LRAVHFHPHAAPLLLTAE-----VNDLDS 261 (730)
Q Consensus 191 -~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~--V~sVaFSPdG~~Llatgs-----vwdl~s 261 (730)
...+.++..+..|.+|++.+ |+.|++|++....... ...+.++... -..-..+||+.+++.+.. +|.+..
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 23567788888888766555 7779999998765422 2223333221 122347899998887665 666664
Q ss_pred CC
Q 004785 262 SE 263 (730)
Q Consensus 262 ~~ 263 (730)
..
T Consensus 349 ~e 350 (720)
T KOG0321|consen 349 PE 350 (720)
T ss_pred cc
Confidence 33
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2e-11 Score=132.71 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=141.0
Q ss_pred cCCC-EEEEEeCCCeEEEEeCCCCC------CCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785 79 DARR-GLASWVEAESLHHLRPKYCP------LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 79 d~g~-~L~Sgs~DgsIrlWd~~t~~------L~gH~-~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~ 150 (730)
..|. .+++++..+-...||+.+.+ +.++. ..+.....|+++++|+..+..|.|.|....+++.+..++ -.+
T Consensus 267 p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG 345 (514)
T KOG2055|consen 267 PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEG 345 (514)
T ss_pred CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ecc
Confidence 3455 88888888899999998763 33443 457788999999999999999999999999999998887 457
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe--EEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V--~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~ 227 (730)
.|..+.|+. +++.|+.++.+|.|.+||++...++..+...+.| ++++.+++|.+||+|++.+ |.|||.++......
T Consensus 346 ~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 346 VVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence 799999998 8888888899999999999999999998777766 4566779999999999877 99999765432221
Q ss_pred C---eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 228 P---RIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 228 ~---~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+ ..+..-...|+++.|++|+..|+.++.
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 2 223334668999999999997766654
No 153
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=5e-11 Score=124.49 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=133.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa 156 (730)
.+..|...+-||++++||..... .-.|..++.+++|.+ ...+++|+-||.|+++|+.++.. ..+..|...|.+|.
T Consensus 24 ~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~ 101 (323)
T KOG1036|consen 24 SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIE 101 (323)
T ss_pred cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEE
Confidence 44556666689999999988764 336899999999986 56889999999999999998874 45567999999999
Q ss_pred EccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCC
Q 004785 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTR 235 (730)
Q Consensus 157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~ 235 (730)
.++ ....+++|+.|++|++||.+.......+.....|.++.. .|+.|++|+.+ .|.+||+++..... ......-.
T Consensus 102 ~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lk 177 (323)
T KOG1036|consen 102 YSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESSLK 177 (323)
T ss_pred eec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhccccce
Confidence 999 889999999999999999998666666777778887765 47788887755 59999999876532 11222345
Q ss_pred CCeEEEEEccCCCeEEEEE
Q 004785 236 RSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 236 ~~V~sVaFSPdG~~Llatg 254 (730)
-.+++|++-|++.-+++++
T Consensus 178 yqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred eEEEEEEEecCCCceEEEe
Confidence 6789999999776555544
No 154
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.4e-10 Score=126.91 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=135.7
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-E
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-I 164 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-l 164 (730)
.|.++|.... .+..+...+...+|+|||++|+.++.+ ..|++||+.+++... +..+.+.+..++|+| +++ +
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 5777776543 355677779999999999999988654 489999999886543 344556677899999 665 4
Q ss_pred EEEEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCCe
Q 004785 165 IASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 165 LaSgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
+++.+.++ .|++||+.+++......+........|+|||+.|+..++. .|++||+.+++.. .+..+...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence 45555544 5999999988766555555555678999999988877642 3888888765432 234445667
Q ss_pred EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI 318 (730)
..+.|+|+|++++.+..... . ..+.+.+........+... .....|.|+||++.|
T Consensus 325 ~~~~~spdg~~i~~~~~~~~----~----------------~~i~~~d~~~~~~~~l~~~-----~~~~~p~~spdg~~l 379 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGG----G----------------FNIAVMDLDGGGERVLTDT-----GLDESPSFAPNGRMI 379 (417)
T ss_pred cCeEECCCCCEEEEEEccCC----c----------------eEEEEEeCCCCCeEEccCC-----CCCCCceECCCCCEE
Confidence 78899999998887764220 0 1233344333221111111 012357899999999
Q ss_pred EEEecCC
Q 004785 319 SLQHTEH 325 (730)
Q Consensus 319 ~~~~~~~ 325 (730)
++....+
T Consensus 380 ~~~~~~~ 386 (417)
T TIGR02800 380 LYATTRG 386 (417)
T ss_pred EEEEeCC
Confidence 9866644
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.35 E-value=3.7e-11 Score=131.32 Aligned_cols=172 Identities=16% Similarity=0.244 Sum_probs=144.0
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCC-CCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEE-ecCCC
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC----PLSPP-PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVL-HGHRR 150 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH-~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~ 150 (730)
.....+|++++..|.|.+....++ +|... ...|.-+.|++..+ +|.+++++|.|.+||+....++..+ +.|..
T Consensus 130 N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA 209 (673)
T KOG4378|consen 130 NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA 209 (673)
T ss_pred cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence 346778999999999999998876 34333 34567999999655 6778899999999999887776554 67999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCe
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPR 229 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~ 229 (730)
+...|+|+|.+..+|++.+.|..|.+||++..+....+....+...++|.++|.+|+.|+. ++|..||++..+. ...
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~ 287 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVA 287 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC--Cce
Confidence 9999999998889999999999999999998888888888889999999999999999985 5599999998765 445
Q ss_pred EEecCCCCeEEEEEccCCCeEEE
Q 004785 230 IVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 230 ~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
.+..|...|++|+|-+.- .++.
T Consensus 288 v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred EeeecccceeEEEeeecc-eeee
Confidence 778899999999998875 3444
No 156
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4e-10 Score=126.46 Aligned_cols=221 Identities=13% Similarity=0.105 Sum_probs=140.5
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL 165 (730)
.|.++|.+.. .+..+...+....|||||+.|+..+.+ ..|++||+.+++... +....+.+...+|+| +++.+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEE
Confidence 3666776544 355677789999999999999887654 469999999886533 333344556789999 66655
Q ss_pred E-EEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCCe
Q 004785 166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 166 a-SgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
+ +.+.++ .|++||+.+++......+........|+|||+.|+..++. .|+++|+.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCc
Confidence 4 555555 6888999988776655555566778999999988877742 28888887765322 22122233
Q ss_pred EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI 318 (730)
....|+|||++++.+..... . ..+.+.+..++....+. ... ....|.|+|||+.|
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~----~----------------~~l~~~dl~tg~~~~lt-~~~----~~~~p~~spdg~~i 388 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDG----N----------------FHVAAQDLQRGSVRILT-DTS----LDESPSVAPNGTML 388 (430)
T ss_pred cceEECCCCCEEEEEEccCC----c----------------eEEEEEECCCCCEEEcc-CCC----CCCCceECCCCCEE
Confidence 45789999998887753211 0 02344443333222221 110 11257899999999
Q ss_pred EEEecCCCCCcccceeecCCCcceee
Q 004785 319 SLQHTEHDSGATRTQQSLRSSSSVRL 344 (730)
Q Consensus 319 ~~~~~~~dsgs~~~~~~~~ss~~~~l 344 (730)
++...... ...++..+.++....+|
T Consensus 389 ~~~~~~~g-~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 389 IYATRQQG-RGVLMLVSINGRVRLPL 413 (430)
T ss_pred EEEEecCC-ceEEEEEECCCCceEEC
Confidence 98665432 23456666654444344
No 157
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.4e-10 Score=123.51 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=135.6
Q ss_pred cceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeC--CCeEE
Q 004785 62 TARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHG--DHTVK 132 (730)
Q Consensus 62 ~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~~LaSgS~--DgtVr 132 (730)
....|...|...+.+++-++++|+..-++. |.+||+++-+ ...+...+.++.++.++.+||.=+. .|.|.
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 334567778888888888999999888776 9999998753 2256777888888888889987543 68999
Q ss_pred EEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-EEEEECCCCeEEEEecC---CCCeEEEEEcCCCCEEEE
Q 004785 133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAV 208 (730)
Q Consensus 133 VWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~i~~l~h---~~~V~sVafSPdG~~LAs 208 (730)
|||+.+-+.+..+..|++.+-+++|++ +|.++||+|..|+ ||++.+.+|+.+..+.- ...|.+++|+||+++|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 999999999999999999999999999 9999999999998 78999999999888753 347899999999999998
Q ss_pred EEC-CeEEEEEcCCCc
Q 004785 209 ASG-HKLYIWRYNMRE 223 (730)
Q Consensus 209 gSd-d~I~VWDl~t~~ 223 (730)
.++ ++|+||.+.+..
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 885 559999987765
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.3e-11 Score=136.98 Aligned_cols=176 Identities=14% Similarity=0.202 Sum_probs=140.8
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------- 138 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------- 138 (730)
-.....|++++.|++|++|+++.. ++.+|.++|.|++.++++..+++|+.||+|+.|++..
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS 382 (577)
T ss_pred CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence 345678999999999999998321 4779999999999999999999999999999996531
Q ss_pred C---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-------------------------------
Q 004785 139 G---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC------------------------------- 184 (730)
Q Consensus 139 g---~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~------------------------------- 184 (730)
. .....|.||++.|+.+++|+ ..+.|++++.||+|++|+......
T Consensus 383 ~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 383 YDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred cCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence 1 22356789999999999999 888899999999999998765432
Q ss_pred -------------EEEec--------CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004785 185 -------------IGSRD--------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (730)
Q Consensus 185 -------------i~~l~--------h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVa 242 (730)
+..+. ....++-+.++|.+.+.+++-.+. |+++|..++..+. ....|...+++++
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~---s~~a~~~svtsla 538 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH---SMVAHKDSVTSLA 538 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---heeeccceeccee
Confidence 00000 012456788899998888888555 9999999988644 5677889999999
Q ss_pred EccCCCeEEEEEeeC
Q 004785 243 FHPHAAPLLLTAEVN 257 (730)
Q Consensus 243 FSPdG~~Llatgsvw 257 (730)
+.|+|.++++.....
T Consensus 539 i~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDG 553 (577)
T ss_pred ecCCCceEEeecCCc
Confidence 999999888776533
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2e-11 Score=131.83 Aligned_cols=183 Identities=21% Similarity=0.193 Sum_probs=136.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEe-CCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLR-PKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH- 146 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd-~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~- 146 (730)
...++..-++..+++|..||++|+|+ .... ....|.+.|.++.|||||++|++-+.| ..+||++++|..+....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 35556666789999999999999999 4333 356899999999999999999999999 99999999997665553
Q ss_pred -cCCCCcEEEEEccCCC-----CEEEEEeCCCcEEEEECCCCeE------EEEecCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004785 147 -GHRRTPWVVRFHPLNP-----TIIASGSLDHEVRLWNASTAEC------IGSRDFYRPIASIAFHASGELLAVAS-GHK 213 (730)
Q Consensus 147 -gH~~~V~sVafSP~dg-----~lLaSgS~DgtVrLWDl~tg~~------i~~l~h~~~V~sVafSPdG~~LAsgS-dd~ 213 (730)
.-......+.|+- ++ .+++....-+.|+.||+...+. .+.......|.+++.++||+++|.|+ ++.
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 1223355678877 44 2333344556677777654322 11123445799999999999999999 555
Q ss_pred EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258 (730)
Q Consensus 214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwd 258 (730)
|-|++..+-+... .....|...|+.|.|+||.++++..+..|.
T Consensus 305 Vai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred EEEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 9999988776543 344568889999999999998887665543
No 160
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.8e-10 Score=127.10 Aligned_cols=221 Identities=16% Similarity=0.119 Sum_probs=137.5
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL 165 (730)
.|.++|.... .+..+...+....|||||++|+..+.+ ..|++||+.+++... +....+.....+|+| +++.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEE
Confidence 4566665433 355667788999999999999887653 368999998887532 322233345789999 66644
Q ss_pred -EEEeCCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEEecCCCCe
Q 004785 166 -ASGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 166 -aSgS~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
++.+.++. |++||+.+++......+.......+|+|||++|+..++ +. |+++|+.+++... +.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence 55666664 88889988876665555556678899999998888774 22 7888887665322 22222233
Q ss_pred EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI 318 (730)
....|+|||++++.+...... ..+...+..++....+... .....|.|+|||+.|
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~--------------------~~I~~~dl~~g~~~~lt~~-----~~d~~ps~spdG~~I 407 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGK--------------------FNIARQDLETGAMQVLTST-----RLDESPSVAPNGTMV 407 (448)
T ss_pred cCeeECCCCCEEEEEEecCCc--------------------eEEEEEECCCCCeEEccCC-----CCCCCceECCCCCEE
Confidence 457899999988876542110 0222233222221111111 012257899999999
Q ss_pred EEEecCCCCCcccceeecCCCcceee
Q 004785 319 SLQHTEHDSGATRTQQSLRSSSSVRL 344 (730)
Q Consensus 319 ~~~~~~~dsgs~~~~~~~~ss~~~~l 344 (730)
++....+. ...++..+.++....++
T Consensus 408 ~~~~~~~g-~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 408 IYSTTYQG-KQVLAAVSIDGRFKARL 432 (448)
T ss_pred EEEEecCC-ceEEEEEECCCCceEEC
Confidence 98665432 23456666554444443
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.5e-10 Score=120.83 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=130.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC---------C
Q 004785 79 DARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT---------G 139 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t---------g 139 (730)
--|+++++++.|++|++||.+.. ..+.|.+.|..+.|.+ =|+.+|+++.|++|.||.-.. .
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~W 102 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRW 102 (361)
T ss_pred ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccccee
Confidence 37899999999999999996532 3678999999999987 599999999999999997521 1
Q ss_pred eEEEEEecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEECCCCe------EEEEec--------CCCCeEEEEEcCC--
Q 004785 140 SCLKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAE------CIGSRD--------FYRPIASIAFHAS-- 202 (730)
Q Consensus 140 ~~l~~l~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~tg~------~i~~l~--------h~~~V~sVafSPd-- 202 (730)
.....+...+..|+.|.|.|.. +-.+++++.||.||||+.-.-- .+..+. +.....|+.|+|.
T Consensus 103 v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~ 182 (361)
T KOG2445|consen 103 VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM 182 (361)
T ss_pred EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence 2445677788899999999943 4468889999999999876432 222222 5567789999974
Q ss_pred -CCEEEEEECC------eEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCC
Q 004785 203 -GELLAVASGH------KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHA 247 (730)
Q Consensus 203 -G~~LAsgSdd------~I~VWDl~t~~-~~~~~~~l~~h~~~V~sVaFSPdG 247 (730)
..+||+|++. +++||...... .......+.+|..+|++++|.|+-
T Consensus 183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 183 HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 3589999976 59999886654 323344566899999999999963
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=4.1e-11 Score=126.53 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=139.3
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEE--EecCC-CCc
Q 004785 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKV--LHGHR-RTP 152 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~--l~gH~-~~V 152 (730)
..++.+...++|++||..++ .+++|+..++.+.|.. ....+.+|+.||+|++||+++...... +..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56778888999999999885 5789999999999987 467899999999999999998665543 45555 355
Q ss_pred EEEEEccCCCCEEEEEe----CCCcEEEEECCCCeE-EEEe--cCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCc
Q 004785 153 WVVRFHPLNPTIIASGS----LDHEVRLWNASTAEC-IGSR--DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMRE 223 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS----~DgtVrLWDl~tg~~-i~~l--~h~~~V~sVafSPdG-~~LAsgSdd~-I~VWDl~t~~ 223 (730)
.+++.+- .++++++|. .|-.|.+||++..+. +..+ .|.+.|+++.|+|.. ++|++||-++ |.|||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6666665 677888775 366799999998766 5444 389999999999965 5999999555 9999998876
Q ss_pred cccCCeEEecCCCCeEEEEEccCC--CeEEEEE----eeCCccCCCc
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHA--APLLLTA----EVNDLDSSES 264 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG--~~Llatg----svwdl~s~~~ 264 (730)
+...+.....+...|..+.|..++ +.+..+- .+|++..++.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 655455567788899999999988 5332221 1666665443
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.9e-11 Score=126.46 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=113.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004785 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~ 189 (730)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|++ +++.|+|+|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999999999999999988889999999999999999 99999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCCeEEEEEe
Q 004785 190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 190 h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~~-h~~~V~sVaFSPdG~~Llatgs 255 (730)
+..+|..+.|+|..+-.++++ +..-.+-++..+.....+..-.+ -+..-.+..|.+.|++++++.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 999999999999665444443 55555555544322110000000 0112233469999998887654
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=2.6e-09 Score=115.37 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=116.7
Q ss_pred EEeCCCeEEEEeCCC-CCC-----CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECC-CCeE--EEEEecCCCCcEEE
Q 004785 86 SWVEAESLHHLRPKY-CPL-----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ-TGSC--LKVLHGHRRTPWVV 155 (730)
Q Consensus 86 Sgs~DgsIrlWd~~t-~~L-----~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~-tg~~--l~~l~gH~~~V~sV 155 (730)
+...++.|.+|++.+ +++ ..+.+....++++||+++|++++. ++.|.+|++. +++. +.... ..+....+
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 335678899999853 321 134456788999999999877754 7889999986 3432 22222 33457789
Q ss_pred EEccCCCCEEEEEe-CCCcEEEEECCC-C---eEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccC-
Q 004785 156 RFHPLNPTIIASGS-LDHEVRLWNAST-A---ECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSS- 227 (730)
Q Consensus 156 afSP~dg~lLaSgS-~DgtVrLWDl~t-g---~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~- 227 (730)
+|+| +++++++++ .++.|.+||+.+ + +.+..+........++|+|+|++|++++ ++.|.+||+++...+..
T Consensus 86 ~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 86 STDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 9999 777776665 488999999974 3 2233333444567889999999998777 35599999976432210
Q ss_pred --CeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785 228 --PRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (730)
Q Consensus 228 --~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~ 260 (730)
...........+.+.|+|||++++++.. +|+++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 0111122445788999999998877654 55655
No 165
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=9.8e-11 Score=127.65 Aligned_cols=168 Identities=13% Similarity=0.128 Sum_probs=136.5
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCC-------------CCCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe
Q 004785 76 AGRDARRGLASWVEAESLHHLRPKY-------------CPLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS 140 (730)
Q Consensus 76 a~~d~g~~L~Sgs~DgsIrlWd~~t-------------~~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~ 140 (730)
...+++..|+++++|+.|.+|++.. ..+..|.-+|+++...+- ..+|+|+|.|.++++||+..|.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 3567999999999999999998742 146789999999998874 3589999999999999999999
Q ss_pred EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----------------EEEE-ecCCC--CeEEEEEcC
Q 004785 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------------CIGS-RDFYR--PIASIAFHA 201 (730)
Q Consensus 141 ~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----------------~i~~-l~h~~--~V~sVafSP 201 (730)
.+.++.- ...+.+++.+| .+..++.|+.+|.|.+.++.+-. .+.. .+|.+ .|++++.+-
T Consensus 210 LLlti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 210 LLLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred eeEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 8888763 45699999999 99999999999999998875422 1111 24655 999999999
Q ss_pred CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004785 202 SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 202 dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~ 248 (730)
||.+|++|+ |++|.|||+...+.++ .+....++|+.+.+.|--+
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~iR---tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQCIR---TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHHHH---HHhhhccccceeEeecccc
Confidence 999999999 5569999999888765 3333567888888866543
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=5.5e-11 Score=129.36 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=152.9
Q ss_pred CCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC---CCCC
Q 004785 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPR 108 (730)
Q Consensus 32 sSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~---gH~~ 108 (730)
..+|-++|.+...+..........+.. +...+.++..+..|+..+..|-|.+...+++.+. .-.+
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~------------~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG 345 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEK------------SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG 345 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccc------------hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc
Confidence 456777777765554443322222210 1223444456668888889999999998887543 2467
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE--EEEEccCCCCEEEEEeCCCcEEEEECCC-----
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSLDHEVRLWNAST----- 181 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~--sVafSP~dg~lLaSgS~DgtVrLWDl~t----- 181 (730)
.|..++|+.|++.|+..+.+|.|++||++...++..+.... .|. +++.++ ++.+||+|+..|.|.|||..+
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecC-CCceEEeccCcceEEEeccchhhccC
Confidence 89999999999999999999999999999999999987443 343 566678 889999999999999999764
Q ss_pred -CeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 182 -AECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 182 -g~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.++++.+. ....|+++.|++|+++||.+|. +.+++-.+.....-.........-..|++++|||.|-+++.+..
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 24444443 5678999999999999999984 34999888776543322222333457999999999998776644
No 167
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.27 E-value=2.5e-11 Score=137.11 Aligned_cols=191 Identities=19% Similarity=0.322 Sum_probs=143.9
Q ss_pred eeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCe-----EEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEE
Q 004785 55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAES-----LHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLAST 125 (730)
Q Consensus 55 ~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~Dgs-----IrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSg 125 (730)
...+|...-..+.+.+.....+....+..+++..+... |++|+..+- .|.+|.-.|+-++|||||++|++.
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence 34556665555666666666777778888888877654 899997653 589999999999999999999999
Q ss_pred eCCCeEEEEECCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEE---ecCCCCeEE
Q 004785 126 HGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGS---RDFYRPIAS 196 (730)
Q Consensus 126 S~DgtVrVWDl~tg~----~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~---l~h~~~V~s 196 (730)
+.|+++.+|...... .....+.|+.-|+...|+| ++.+|+|+|.|++|++|..... +.+.. +.+...|+.
T Consensus 591 sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred ecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 999999999875432 2234688999999999999 8899999999999999999887 44433 468889999
Q ss_pred EEEcCC-----CCEEEEEEC-CeEEEEEcCCCcccc---------CCeEEecCCCCeEEEEEccC
Q 004785 197 IAFHAS-----GELLAVASG-HKLYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPH 246 (730)
Q Consensus 197 VafSPd-----G~~LAsgSd-d~I~VWDl~t~~~~~---------~~~~l~~h~~~V~sVaFSPd 246 (730)
++|.|- +..+++|-. +.|.||......... .......|...|+.+.|.|.
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 999872 236677764 559999865221110 11123345677888999875
No 168
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.7e-10 Score=114.55 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=117.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--------CCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 80 ARRGLASWVEAESLHHLRPKYC--------PLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~--------~L~g---H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
++-.+++|+.|++|+.||+... .+.+ ....|.+++..|.|++|++|..|....+||++.++.++.|..|
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 5678889999999999998743 1221 2357999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-----CIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYN 220 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-----~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~ 220 (730)
...|.++.|+| +..++++++.|..|++-|+...- .+..-+|++.+..+.|+|..--+++.+ |.++.+|-++
T Consensus 273 sadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 273 SADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999 99999999999999999997421 122346889999999999877666666 5559999764
No 169
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.27 E-value=3e-10 Score=119.26 Aligned_cols=218 Identities=16% Similarity=0.195 Sum_probs=157.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-C--eEEEEEe
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-G--SCLKVLH 146 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g--~~l~~l~ 146 (730)
-..++..++.+.+...|.+|..... ++..|...|++++|+|..+.|++++.|..-+||.... + ++...+.
T Consensus 18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence 3456777888888888999886543 4788999999999999999999999999999999833 3 4556677
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYN 220 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-----l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~ 220 (730)
.+.+..++|.|+| .++.|++|+....|.||-+....--.. ..+...|.++.|+|++-+|+.|+ |.+.+||..-
T Consensus 98 RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 98 RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred EeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 7899999999999 999999999999999998876543322 34677899999999999999998 5567777542
Q ss_pred CCccccCC---------------eEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEe
Q 004785 221 MREETSSP---------------RIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMA 285 (730)
Q Consensus 221 t~~~~~~~---------------~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~ 285 (730)
-......+ .......+.|..+.|+|+|..|+..+.. ..+.+.
T Consensus 177 IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd-----------------------s~v~~~ 233 (361)
T KOG1523|consen 177 IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD-----------------------STVSFV 233 (361)
T ss_pred eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC-----------------------CceEEe
Confidence 21110000 0111346789999999999988765431 234444
Q ss_pred cCCCCCC--CCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785 286 GAHSSSH--PGLAEEVPLITPPFLRPSFVRDDERISLQH 322 (730)
Q Consensus 286 d~~s~d~--~~L~~~~~~~slpil~p~FSpDg~rI~~~~ 322 (730)
+...+.. ..+.. ..+|.+...|-.+...+.++.
T Consensus 234 da~~p~~~v~~~~~----~~lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 234 DAAGPSERVQSVAT----AQLPLLSVSWISENSVVAAGY 268 (361)
T ss_pred ecCCCchhccchhh----ccCCceeeEeecCCceeecCC
Confidence 4333331 11111 236777777777777776533
No 170
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=8.8e-11 Score=129.71 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=120.1
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEEC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl 179 (730)
.|.||++.|+|++|+.||.+|++||+|..+.|||.-..+.+..+ .||.+.|.++.|-|.. ..++++|..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 58999999999999999999999999999999999888888777 6899999999999843 457889999999999999
Q ss_pred CCCeE----------EEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccCC-------eEEecCCCCeE
Q 004785 180 STAEC----------IGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSSP-------RIVLRTRRSLR 239 (730)
Q Consensus 180 ~tg~~----------i~~l-~h~~~V~sVafSPdG-~~LAsgS-dd~I~VWDl~t~~~~~~~-------~~l~~h~~~V~ 239 (730)
...+. ...+ .|...|..++-.|++ ..+.+++ |+.|+-+|++........ .......-...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 85221 1112 377888999999999 5677777 555999999875432100 01111123567
Q ss_pred EEEEccCCCeEEEEEe
Q 004785 240 AVHFHPHAAPLLLTAE 255 (730)
Q Consensus 240 sVaFSPdG~~Llatgs 255 (730)
++..+|...++++.+.
T Consensus 205 ~ltisp~rp~~laVGg 220 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGG 220 (758)
T ss_pred eeeecCCCCceEEecC
Confidence 8999999988887776
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.27 E-value=4.2e-10 Score=117.36 Aligned_cols=166 Identities=30% Similarity=0.399 Sum_probs=134.3
Q ss_pred EEEEEeC-CCeEEEEeCCC--C---CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 83 GLASWVE-AESLHHLRPKY--C---PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 83 ~L~Sgs~-DgsIrlWd~~t--~---~L~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
.+..... |+.+.+|+... . .+..|...|.+++|+|+++.+++++. |+.+++|++..++.+..+.+|...|.++
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 3444344 88999999886 2 57799999999999999999999886 9999999999989999999999999999
Q ss_pred EEccCCCC-EEEEEeCCCcEEEEECCCCeEEE-Ee-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEE
Q 004785 156 RFHPLNPT-IIASGSLDHEVRLWNASTAECIG-SR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231 (730)
Q Consensus 156 afSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~-~l-~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l 231 (730)
+|+| ++. ++++++.|+.|++||...+..+. .+ .|.... ...|+|++.++++++. +.+++||....... ....
T Consensus 205 ~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~ 280 (466)
T COG2319 205 AFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTL 280 (466)
T ss_pred EEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEE
Confidence 9998 665 66666999999999999887776 33 355554 3389999988887774 45999999877641 1223
Q ss_pred ecCCCCeEEEEEccCCCeEEE
Q 004785 232 LRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Lla 252 (730)
..|...|..+.|+|++..+++
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred ecCCccEEEEEECCCCCEEEE
Confidence 577899999999998887776
No 172
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.26 E-value=4.8e-10 Score=113.29 Aligned_cols=142 Identities=18% Similarity=0.270 Sum_probs=98.8
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEECCC-CeEEEEEec-CCCCcEEEEEccCCCCEEEE--EeCCCcEEE
Q 004785 111 IAAAFSPDGKTLASTHG----------DHTVKIIDCQT-GSCLKVLHG-HRRTPWVVRFHPLNPTIIAS--GSLDHEVRL 176 (730)
Q Consensus 111 t~lafSPDG~~LaSgS~----------DgtVrVWDl~t-g~~l~~l~g-H~~~V~sVafSP~dg~lLaS--gS~DgtVrL 176 (730)
..+.|+++|..|+.-.. -+...||.++. +.....+.- ..++|..++|+| +++.|+. |..+..|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 46788898887654433 12344444422 233444432 345799999999 6665543 446789999
Q ss_pred EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-C---CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-d---d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
||++ ++.+..+. ...++.+.|+|+|++|++++ + +.|.+||+++.+.+. ...| ..+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEEE
Confidence 9996 66666665 46778999999999999987 2 349999999766533 2233 35789999999999998
Q ss_pred EEeeCCcc
Q 004785 253 TAEVNDLD 260 (730)
Q Consensus 253 tgsvwdl~ 260 (730)
+...+..+
T Consensus 161 a~t~~r~~ 168 (194)
T PF08662_consen 161 ATTSPRLR 168 (194)
T ss_pred EEecccee
Confidence 87765444
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=8.2e-11 Score=125.54 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=132.8
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------CeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCcE
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEV 174 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~~l~-gH~~~V~sVafSP~dg~lLaSgS~DgtV 174 (730)
.+.+|.+.|+++.||.++++|++|++|..+++|++.. .+++.... .|...|.+++|.- +..++++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 4779999999999999999999999999999999853 35555443 3568899999998 88999999999999
Q ss_pred EEEECCCCeEEEEecCCC---CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785 175 RLWNASTAECIGSRDFYR---PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (730)
Q Consensus 175 rLWDl~tg~~i~~l~h~~---~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L 250 (730)
.+.|+.+.+.+..+.|.. .|+.+..+|-.+.|++.++++ |.+||.+.......+.....-....+.+.|+|-...|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999998887654 899999999989999888666 9999998876433344444456678899999998888
Q ss_pred EEEEe------eCCccCCC
Q 004785 251 LLTAE------VNDLDSSE 263 (730)
Q Consensus 251 latgs------vwdl~s~~ 263 (730)
+++.+ +||++...
T Consensus 210 i~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EEeccccCCCCceeecccc
Confidence 77654 77776433
No 174
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=7.2e-10 Score=112.02 Aligned_cols=112 Identities=16% Similarity=0.359 Sum_probs=91.3
Q ss_pred CCCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---CcEEEEECC
Q 004785 106 PPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNAS 180 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~ 180 (730)
..+.|.+++|+|+|+.|++.. .+..|.+||++ ++.+..+. ...+..|.|+| ++++++.++.+ |.|.+||++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999876653 46799999996 66666664 46788999999 89999887754 679999999
Q ss_pred CCeEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCC
Q 004785 181 TAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMR 222 (730)
Q Consensus 181 tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-------dd~I~VWDl~t~ 222 (730)
+.+.+....+.. +..++|+|||++|++++ |++++||++...
T Consensus 134 ~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999888877665 68999999999999886 345999998643
No 175
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=9.1e-11 Score=129.58 Aligned_cols=172 Identities=14% Similarity=0.218 Sum_probs=131.8
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC----------
Q 004785 78 RDARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT---------- 138 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t---------- 138 (730)
...+..+..+..-|.|++.|....+ ..-.+..|+|+.|-| +..+++.+..+|.+++||...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3466778888889999999876431 112346899999999 555677778899999997621
Q ss_pred ----Ce--------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEE
Q 004785 139 ----GS--------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAF 199 (730)
Q Consensus 139 ----g~--------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVaf 199 (730)
+. ++..+.--.+.|+..+|+| |+++||+.+.||.+||+|..+.+.+.... .-+...+++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 11 1122222345788899999 99999999999999999999887766544 4567899999
Q ss_pred cCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785 200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 200 SPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvw 257 (730)
||||++|++|+.|. |.||.+..++.+. .-.+|..+|..|+|.| +.++.+.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVA---RGqGHkSWVs~VaFDp----ytt~~ee~ 392 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVA---RGQGHKSWVSVVAFDP----YTTSTEEW 392 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEE---eccccccceeeEeecc----cccccccc
Confidence 99999999999555 9999998887654 5678999999999998 34445555
No 176
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.24 E-value=2.4e-11 Score=128.97 Aligned_cols=154 Identities=14% Similarity=0.208 Sum_probs=120.8
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-
Q 004785 106 PPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE- 183 (730)
Q Consensus 106 H~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~- 183 (730)
-...|.++.|+| .-..|++|+.|+.|.|||++++.+++.+.- +-.-+.|+|+| ....|++++.|..++.+|++.-+
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhcc
Confidence 345688999999 456788888999999999999998876642 23467899999 99999999999999999998743
Q ss_pred EEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccC
Q 004785 184 CIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS 261 (730)
Q Consensus 184 ~i~~-l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s 261 (730)
++.. .+|...|.++.|+|.|+-+++||-| .|+||.++.+..-. .....--..|.+|.||-|.+++++++..-+++.
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 3333 4688999999999999999999955 59999998876422 112222457999999999998888776555554
Q ss_pred CC
Q 004785 262 SE 263 (730)
Q Consensus 262 ~~ 263 (730)
|+
T Consensus 342 Wk 343 (433)
T KOG0268|consen 342 WK 343 (433)
T ss_pred ee
Confidence 43
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=141.22 Aligned_cols=180 Identities=16% Similarity=0.248 Sum_probs=133.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
....+..|++|++|..+++|..++. .+.||.+.|+.++.+.+..+++++|.|..|++|.+.++.++..+.+|++.|
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav 277 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV 277 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence 3457899999999999999998876 578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--------------EEEe--c---------------CCCCeEEEEEcC
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--------------IGSR--D---------------FYRPIASIAFHA 201 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--------------i~~l--~---------------h~~~V~sVafSP 201 (730)
++|+|+| ..+.+.||++++||.+-... +..+ . ....+..++|..
T Consensus 278 taiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~ 352 (1113)
T KOG0644|consen 278 TAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS 352 (1113)
T ss_pred eeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc
Confidence 9999999 44889999999999871110 0000 0 001122233333
Q ss_pred CCCEEEEEE------------CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCC
Q 004785 202 SGELLAVAS------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE 263 (730)
Q Consensus 202 dG~~LAsgS------------dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~ 263 (730)
.+-.+++.+ +..+.+|++-++.... .+.+|...++.+.|+|-...++-+.+ +|++..+.
T Consensus 353 ~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 353 NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred cceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 332333332 2237888888886544 56788889999999997776665443 66666443
Q ss_pred c
Q 004785 264 S 264 (730)
Q Consensus 264 ~ 264 (730)
.
T Consensus 430 p 430 (1113)
T KOG0644|consen 430 P 430 (1113)
T ss_pred c
Confidence 3
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.8e-11 Score=143.05 Aligned_cols=174 Identities=18% Similarity=0.182 Sum_probs=139.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC--C----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP--L----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR- 150 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~--L----~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~- 150 (730)
..+..|++|.+||.|.+||+..-. + ......|.+++|+. ....|++++.+|.+.|||++..+.+..+..|.+
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~ 206 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR 206 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc
Confidence 355689999999999999987542 1 12456799999998 566889999999999999999988887776655
Q ss_pred -CcEEEEEccCCCCEEEEEeCCC---cEEEEECCCC-eEEEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCC
Q 004785 151 -TPWVVRFHPLNPTIIASGSLDH---EVRLWNASTA-ECIGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMR 222 (730)
Q Consensus 151 -~V~sVafSP~dg~lLaSgS~Dg---tVrLWDl~tg-~~i~~l-~h~~~V~sVafSPdG-~~LAsgS-dd~I~VWDl~t~ 222 (730)
.+..++|||++...+++++.|. .|.+||++.- ..++++ .|...|.++.|++.+ ++|++++ |++|.+|+.+++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 4678999998888888888764 5999999853 455665 699999999999977 5666666 566999999999
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+.+. .+.....++..+.|+|...-+++.+.
T Consensus 287 Evl~---~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 287 EVLG---ELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred eEee---ecCCCCcceeeeeecCCCcchhhhhe
Confidence 8755 45556789999999998886666554
No 179
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.21 E-value=2.4e-10 Score=124.33 Aligned_cols=175 Identities=14% Similarity=0.190 Sum_probs=132.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCc
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTP 152 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH~~~V 152 (730)
+...+.+.+.||+|++-|++... +..-...+..+.|+.+...++.+.+=|...+||.+++.. ...+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 44578889999999999998763 222445678899999877777887777999999988654 67778899999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAE-----CIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-----~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
..|+++|....+++|++.|++++|||++.-. .+..+.|...|.++.|||+|-.|++.+ |+.|+|||..--....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 9999999889999999999999999998632 255678999999999999877677777 6679999984111111
Q ss_pred CCeEEecCCC----C--eEEEEEccCCCeEEEEE
Q 004785 227 SPRIVLRTRR----S--LRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 227 ~~~~l~~h~~----~--V~sVaFSPdG~~Llatg 254 (730)
.+...+.|.. + .....|.|+..++++..
T Consensus 406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred CccceeeccCcccccccchhheeCCCccEEEEec
Confidence 2333444432 2 23557999888555443
No 180
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=8.1e-10 Score=117.54 Aligned_cols=169 Identities=14% Similarity=0.215 Sum_probs=125.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC---CCC-CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC----CeE---------
Q 004785 80 ARRGLASWVEAESLHHLRPKYC---PLS-PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT----GSC--------- 141 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~---~L~-gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t----g~~--------- 141 (730)
.-..++.+..|.+|++|+..+. .|+ .-...|+|++|-| .++-|+.|+.. -|.||.... +..
T Consensus 109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~ 187 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHL 187 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccch
Confidence 3456678889999999998753 233 2356799999999 45678888775 488997632 111
Q ss_pred -EEEEecCCCCcEEEEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004785 142 -LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIW 217 (730)
Q Consensus 142 -l~~l~gH~~~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VW 217 (730)
+....+| ..|++++|++ ++..+++++. |..|.|||..++..+... ...+.+.-+.|||||.+|+.++ |...++|
T Consensus 188 qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred hheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence 2223456 5799999999 8888888775 678999999999887765 3456788999999999888887 6669999
Q ss_pred EcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 218 RYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 218 Dl~-t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
... +....+ .. -....|..-+|+|+|++|+.+..
T Consensus 266 ~e~q~wt~er---w~-lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 266 QENQSWTKER---WI-LGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred hhcccceecc---ee-ccCCceeeeeecCCCCEEEEEEc
Confidence 553 333222 22 23448999999999999988765
No 181
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=9.1e-10 Score=124.53 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=139.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCcE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~~~V~ 153 (730)
.+.+|++.+-+|+|.-||+.+.+ +....+.|.+++.+|.+..++.|++||.++.++...++.. ..|.-.++.|.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 67899999999999999998763 4456778999999999999999999998888888877654 34455678899
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCc
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE 223 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---------h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~ 223 (730)
+++|+| ++..+++|+.||.|++||+.++..+.... ...-|.++.|-.|+. |++|. .|.|.+||...++
T Consensus 159 slsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 159 SLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcc
Confidence 999999 88999999999999999999998776321 122467777776665 45554 5679999999998
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..+ ...-|...|.+++..+++.++++++-
T Consensus 237 Liq---S~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 237 LIQ---SHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred hhh---hhhhhhcceeEEEEcCCCCeEEEccC
Confidence 765 56678899999999999887777663
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.20 E-value=2.2e-10 Score=120.26 Aligned_cols=147 Identities=18% Similarity=0.265 Sum_probs=120.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC-CCC
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-STA 182 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl-~tg 182 (730)
..+|+|.+|++|+..+|.+.+...|.||..... +...+++.|...|+.|.|+| ..+.|++|+.|..-++|.. ..+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 467999999999999999999999999987654 46788999999999999999 9999999999999999999 444
Q ss_pred eEE---EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 183 ECI---GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 183 ~~i---~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
+-. ..+.+++..++|.|+|.++.+|+|++.+ |.||-+...+.-- ...+...++..|.++.|+|++-.+++++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 432 3356899999999999999999999776 8898887654321 1123445678899999999998555544
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.20 E-value=2.3e-10 Score=120.15 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=132.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCC------CCC---CeEEEEECCCCCEEEEEeCCCeEEEEEC-CCCeEEEEE-----
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLSP------PPR---STIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKVL----- 145 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~g------H~~---~Vt~lafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~~l----- 145 (730)
...+++.+.+..|++||+.+++++. |.. .-.++.|+|||.+|+.| ....|+++|+ +.|+.-..+
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 3455567789999999999987653 333 34699999999999866 6679999999 556432221
Q ss_pred --ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004785 146 --HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS--GHKLYIWRYN 220 (730)
Q Consensus 146 --~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~ 220 (730)
.+..+-|.+++|+|.+...++.++....+-|+.-..+.++..+ +|.+.|+.+.|+++|+.|++|. +++|..||++
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 2346778999999988889999999999989888887777765 5999999999999999999998 6679999998
Q ss_pred CCccccCCeEEecCCC---CeEEEEEccCCCeEEEEE-----eeCCccC
Q 004785 221 MREETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTA-----EVNDLDS 261 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~---~V~sVaFSPdG~~Llatg-----svwdl~s 261 (730)
..... ...+..|.. .-.-....|+|++|+++. .+|+++.
T Consensus 282 ~~~~p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSRDP--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hccch--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 76542 223344433 223445578888665542 2676664
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=130.58 Aligned_cols=176 Identities=20% Similarity=0.283 Sum_probs=135.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l 188 (730)
.|+.++|-|||..|+.+..| .+.+||...|..+..+++|++.|++++|+. +++.++||+.|..|.+|.-+ -+-+..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~k-lEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSK-LEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccc-ccceeee
Confidence 79999999999998887554 799999999999999999999999999999 99999999999999999864 3444557
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeE
Q 004785 189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL 268 (730)
Q Consensus 189 ~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l 268 (730)
.|.+.|.++.|.|-...|++++=...-+|......... ......+.+.+|..||.+++.+-....
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~~nGT---------- 155 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGMFNGT---------- 155 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEeccCce----------
Confidence 79999999999999999999987677889776554322 223456889999999998876542211
Q ss_pred eccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCC
Q 004785 269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE 316 (730)
Q Consensus 269 ~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~ 316 (730)
+.+.+ ..+++.....-+-+...|+|..+|+|...
T Consensus 156 -------------IsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 156 -------------ISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred -------------EEeec-CCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence 22221 22333333334444566888888888754
No 185
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4e-09 Score=118.96 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=114.8
Q ss_pred cCCCEEEEEe---CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCC
Q 004785 79 DARRGLASWV---EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 79 d~g~~L~Sgs---~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (730)
.+++.|+..+ .+..|.+|++.+++ +....+.+..+.|||||+.|+.. +.++ .|++||+.+++... +..+.
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~ 286 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGR 286 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCC
Confidence 3445555332 23468899987762 33444556678999999988865 3344 59999999887544 44444
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004785 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR 222 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~ 222 (730)
..+....|+| +++.|+..+. ++ .|+++|+.+++..........+....|+|||++|+..+. + .|++||+.++
T Consensus 287 ~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 287 SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 5678899999 7776666554 34 455567877765554444455667899999999888762 2 2899999877
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+... +.. ........|+|||++++.++.
T Consensus 366 ~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 366 GVQV----LTD-TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CeEE----eCC-CCCCCCceECCCCCEEEEEEc
Confidence 5322 222 223456789999998888765
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=9.7e-10 Score=123.82 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=113.6
Q ss_pred cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeEE--EEECCCCeEEEEEecCC
Q 004785 79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVK--IIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 79 d~g~~L~Sgs~D---gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVr--VWDl~tg~~l~~l~gH~ 149 (730)
.+++.|+..+.+ ..|.+||+.++. +....+....++|+|||++|+.++ .++.+. +||+.+++ +..+..+.
T Consensus 213 PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 291 (429)
T PRK01742 213 PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGA 291 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCC
Confidence 355566655432 369999998763 332333455789999999988875 577654 55776665 45566677
Q ss_pred CCcEEEEEccCCCCEEE-EEeCCCcEEEEECCC-CeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC
Q 004785 150 RTPWVVRFHPLNPTIIA-SGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS 227 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLa-SgS~DgtVrLWDl~t-g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~ 227 (730)
..+....|+| +++.++ +...++...||++.. +.....+.+.. ....|+|||++|++.+.+.+.+||+.+++...
T Consensus 292 ~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~- 367 (429)
T PRK01742 292 GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEV- 367 (429)
T ss_pred CCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEE-
Confidence 7788999999 666554 555678888887643 22223334333 45789999999998887778889998876422
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+... .....+.|+|||++++.++.
T Consensus 368 ---lt~~-~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 368 ---LSST-FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred ---ecCC-CCCCCceECCCCCEEEEEEc
Confidence 2111 23356789999998887764
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.18 E-value=1.7e-10 Score=119.67 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=118.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEE-----ecCCCCcEEEEEcc-CCCCEEEEEeCCCcEEEE
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVL-----HGHRRTPWVVRFHP-LNPTIIASGSLDHEVRLW 177 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l-----~gH~~~V~sVafSP-~dg~lLaSgS~DgtVrLW 177 (730)
.+-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+ .+|+...++-+|+| .+++.+++ ..|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 4567899999999999998875 88999999988765 3333 24667788999999 45566655 568899999
Q ss_pred ECCCCeEEEEec--CCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 178 NASTAECIGSRD--FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 178 Dl~tg~~i~~l~--h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
|+++.++...+. |...|..+.|.|+-+ +|++++|++ |+|||.++.+. ....+.+|.-+|++|.|+|.-..|+.+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEe
Confidence 999988777664 788999999999887 667777665 99999998775 446788899999999999987777776
Q ss_pred Ee
Q 004785 254 AE 255 (730)
Q Consensus 254 gs 255 (730)
++
T Consensus 277 ~~ 278 (370)
T KOG1007|consen 277 GG 278 (370)
T ss_pred cC
Confidence 65
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.18 E-value=2.6e-10 Score=125.83 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=127.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa 156 (730)
....++..++||++.+.+-... .+..|.+.|.+-.|+|||.-|+++++||.|++|. ++|....++......|+|++
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred CcceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 3456777889999998875433 4678999999999999999999999999999999 56765555555667899999
Q ss_pred EccCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecC
Q 004785 157 FHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT 234 (730)
Q Consensus 157 fSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h 234 (730)
|.|+..+.+++.+. .+.|=-+.. .+.++...|.+-|.++.|++..+++++|+.| +.+|||..... ......|
T Consensus 153 W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ 226 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAE 226 (737)
T ss_pred ECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChh
Confidence 99955555555443 455555554 3556667799999999999999999999965 59999976553 2345668
Q ss_pred CCCeEEEEEccCCCe
Q 004785 235 RRSLRAVHFHPHAAP 249 (730)
Q Consensus 235 ~~~V~sVaFSPdG~~ 249 (730)
..+|++++|.|+..+
T Consensus 227 ey~ITSva~npd~~~ 241 (737)
T KOG1524|consen 227 EYAITSVAFNPEKDY 241 (737)
T ss_pred ccceeeeeeccccce
Confidence 889999999999443
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.18 E-value=4.7e-10 Score=116.42 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=133.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEE-e
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVL-H 146 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~----------L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l-~ 146 (730)
++..+++.. |..|.+|+++... -.+|....++-+||| ||+.+++. .|+++..||+++.++...+ .
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh
Confidence 556666654 8889999987542 124667789999999 88888876 5789999999998777666 5
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCC
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMR 222 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~ 222 (730)
.|...|..+.|+|+...+|++|+.||.|+|||.++-+ +++.+ +|...|.++.|+|.-. +|.+|+ |..|.+|....-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 7888999999999777899999999999999998644 45554 5889999999999665 555555 445888876432
Q ss_pred cc---------------------c-----cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EE---------------------T-----SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~---------------------~-----~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.. . .....+..|.+.|++++||.-..+++++-+
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 10 0 012245678999999999999998888765
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.18 E-value=2.8e-10 Score=118.17 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=133.0
Q ss_pred CCCeEEEEeCCC-------------CCCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCC
Q 004785 89 EAESLHHLRPKY-------------CPLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRT 151 (730)
Q Consensus 89 ~DgsIrlWd~~t-------------~~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~~~ 151 (730)
.+..+|+|.+.. .+-..+..++++..|+. |-++|.+.|-|.+..|||++++. ....+-.|...
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 355688888763 13345677899999998 88899999999999999999873 35667889999
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ec--C-CCCeEEEEEcCCC-CEEEEEE-C-CeEEEEEcCCCcc
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--F-YRPIASIAFHASG-ELLAVAS-G-HKLYIWRYNMREE 224 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~--h-~~~V~sVafSPdG-~~LAsgS-d-d~I~VWDl~t~~~ 224 (730)
|+.|+|...+-+.|++.+.||.||+||++.-+.-.. ++ . ..+...++|++.. +++|+-. + .+|.|.|++....
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 999999986678999999999999999997654333 22 2 4567788998744 5777765 3 3499999998764
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (730)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~ 260 (730)
....+..|...|+.++|.|..+.-+++++ +||+.
T Consensus 279 --pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 279 --PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred --ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 34567889999999999998876666655 66665
No 191
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.1e-09 Score=119.86 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=116.6
Q ss_pred CCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCC--eEEEEECCCCeEEEEEecCCC
Q 004785 80 ARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 80 ~g~~L~Sgs~---DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaS-gS~Dg--tVrVWDl~tg~~l~~l~gH~~ 150 (730)
+++.|+..+. +..|.+||+.+++ +....+...+..|+|||+.|+. .+.++ .|++||+.+++. ..+..+..
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~ 292 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFG 292 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCC
Confidence 4556665543 3469999987763 4445555668999999998764 45554 699999988874 45555666
Q ss_pred CcEEEEEccCCCCEEEEEe-CCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCCc
Q 004785 151 TPWVVRFHPLNPTIIASGS-LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMRE 223 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS-~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d---~I~VWDl~t~~ 223 (730)
.....+|+| +++.++..+ .++. |+++|+.+++.............++|+|||++|+..+. + .|++||+.+++
T Consensus 293 ~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 293 IDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 567899999 777666555 4444 77778877765544433444557899999999988762 2 39999997765
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.. .+. +........|+|||++++.+..
T Consensus 372 ~~----~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 372 VR----TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eE----ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 42 122 2234557799999998887765
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.17 E-value=7e-09 Score=108.20 Aligned_cols=176 Identities=27% Similarity=0.403 Sum_probs=134.9
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEE-EEec
Q 004785 75 EAGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLK-VLHG 147 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~-DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~-~l~g 147 (730)
......+..++.+.. |+.+++|+.... .+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 334445557777775 999999999863 4667999999999999998 55555899999999999888887 6888
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~ 224 (730)
|...+ ...|+| ++.++++++.|+.+++||+..... ...+ .|...+.++.|+|++..+++++.+. +.+||..+...
T Consensus 241 ~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 241 HSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred CCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 98876 448999 668888999999999999987664 4443 6788999999999988888876445 99998887765
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
..... ...|...+..+.|.+++..++.+
T Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 319 LSSLT-LKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred EEEee-ecccCCceEEEEECCCCCEEEEe
Confidence 43111 23666679999994332444444
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=1.3e-09 Score=110.83 Aligned_cols=138 Identities=22% Similarity=0.341 Sum_probs=111.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l 188 (730)
.|+++-..|..+-|+.++.|+.++-||+++|+..+.|+||++.|.++.--. ....+++|+.||++|+||.++++++..+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEe
Confidence 589999999777777777999999999999999999999999999998854 5667899999999999999999998886
Q ss_pred cCC-----------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 189 DFY-----------RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 189 ~h~-----------~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+.. ..|-++ .-+..+|++|++.++.+|.++..+... ...-...|..+.|..| .+++.+.
T Consensus 195 e~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp~lslwhLrsse~t~----vfpipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGPKLSLWHLRSSESTC----VFPIPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred ccccChhhcCcccCceeEEE--eccCceEEecCCCceeEEeccCCCceE----EEecccceeEeeeecc--eEEEecc
Confidence 522 234444 345679999988889999999887543 5556678888899655 3555553
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.17 E-value=4.9e-10 Score=123.69 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=128.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
.+|..|.+.++||.|++|.-..- ++.....+|.|++|.|+...++.+-. +.+.|=-+.-...+-.++.|.+-|.++
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSL 192 (737)
T ss_pred CCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEe
Confidence 46788999999999999996432 45667788999999998877666643 456666666666677889999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCC
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR 235 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~ 235 (730)
.|++ ..+++++|+.|-..++||.........-.|..+|++++|.|+ +.+++++-+.+++ .....
T Consensus 193 ~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~--------------~~p~~ 256 (737)
T KOG1524|consen 193 SWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARF--------------SSPRV 256 (737)
T ss_pred ecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeee--------------cCCCc
Confidence 9999 999999999999999999875555555668999999999999 7777887766662 12234
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 004785 236 RSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 236 ~~V~sVaFSPdG~~Llatgs 255 (730)
+.|..++||+||..+..+++
T Consensus 257 GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cceEEEEEcCCCceeecccc
Confidence 67899999999998776554
No 195
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=6.7e-09 Score=117.14 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=120.5
Q ss_pred cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCC--eEEEEECCCCeEEEEEecCC
Q 004785 79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 79 d~g~~L~Sgs~---DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaS-gS~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (730)
.+++.|+..+. +..|.+||+.++. +..+.+.+...+|+|||+.|+. .+.++ .|++||+.+++. ..+..+.
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~ 289 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP 289 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCC
Confidence 34555655442 4579999998763 5567778889999999998764 45454 488889988764 4566666
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004785 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR 222 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~ 222 (730)
+......|+| +++.++..+. ++ .|++||+.+++..........+....|+|||++|+..+. + .|.+||+..+
T Consensus 290 ~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 290 AIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 6677899999 7776666553 33 688899887766555545566777899999999988763 2 3888897654
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.. . .+ .....+..+.|+|||+.++.+..
T Consensus 369 ~~-~---~l-t~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 369 GE-R---IL-TSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ce-E---ec-cCCCCCCCCeECCCCCEEEEEEc
Confidence 32 1 12 22335678899999998887664
No 196
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.15 E-value=9.9e-10 Score=115.47 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=131.2
Q ss_pred EecCCCEEEEEeCCCeEEEEeCC-CCC------C-----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEE
Q 004785 77 GRDARRGLASWVEAESLHHLRPK-YCP------L-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLK 143 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~-t~~------L-----~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~ 143 (730)
...+|..|+.| ....|+++|.. .++ . .+..+-|.|++|+| +.+.++.|+....+-||.-..+.++.
T Consensus 166 Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ 244 (406)
T KOG2919|consen 166 FSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ 244 (406)
T ss_pred ecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee
Confidence 34577777765 56789999983 331 1 23467799999999 66799999999999999988899999
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeC-CCcEEEEECCCCe-EEEEec-CCC-CeEEE--EEcCCCCEEEEEE-CCeEEE
Q 004785 144 VLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAE-CIGSRD-FYR-PIASI--AFHASGELLAVAS-GHKLYI 216 (730)
Q Consensus 144 ~l~gH~~~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~-~i~~l~-h~~-~V~sV--afSPdG~~LAsgS-dd~I~V 216 (730)
.+-+|.+.|+.+.|++ +++.|++|.. |-.|..||++.-+ .+..+. |.+ ....| ...|+|++|++|+ ++.|++
T Consensus 245 llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v 323 (406)
T KOG2919|consen 245 LLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV 323 (406)
T ss_pred eecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE
Confidence 9999999999999999 8888888765 7789999998643 333332 322 22333 4568999999997 555999
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
||+++... ....+..++..|+.|+++|--. |++++
T Consensus 324 wdlk~~gn--~~sv~~~~sd~vNgvslnP~mp-ilats 358 (406)
T KOG2919|consen 324 WDLKDLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATS 358 (406)
T ss_pred EecCCCCC--cccccccccccccceecCcccc-eeeec
Confidence 99988433 2346677889999999999855 44444
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=6.2e-10 Score=117.76 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=123.4
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCC-CCeEEEEECCCCCEEEEEeC----CCeEEEEECCCCe
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPP-RSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGS 140 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~-~~Vt~lafSPDG~~LaSgS~----DgtVrVWDl~tg~ 140 (730)
...+...+....+.+++.||+|++||++.. ...+|+ .+..|++.+-+++.|+.|.. |-.|.+||++..+
T Consensus 75 ~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 75 GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 455555568889999999999999999865 245666 46778888778888988865 6789999999876
Q ss_pred E-EEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCCCCeEEEEEcCCC-CEEEEEE-CC
Q 004785 141 C-LKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----CIGSRDFYRPIASIAFHASG-ELLAVAS-GH 212 (730)
Q Consensus 141 ~-l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----~i~~l~h~~~V~sVafSPdG-~~LAsgS-dd 212 (730)
. +..+ ..|...|+++.|+|.+.++|+|||.||-|.|+|++... ....+.+...|..+.|..++ +.|.+-+ ..
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence 6 5544 67999999999999999999999999999999998643 24456788899999999888 3455555 66
Q ss_pred eEEEEEcCCCcc
Q 004785 213 KLYIWRYNMREE 224 (730)
Q Consensus 213 ~I~VWDl~t~~~ 224 (730)
+..+|+++.+..
T Consensus 235 tf~~~ele~~~~ 246 (376)
T KOG1188|consen 235 TFAIYELEDGSE 246 (376)
T ss_pred ceeEEEccCCCh
Confidence 799999988764
No 198
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.3e-08 Score=114.81 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCE--EEEEeC-C--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKT--LASTHG-D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~--LaSgS~-D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~ 163 (730)
.|.+.|.+.. ++......+..-.|||||+. ++..+. + ..|++.++.+|+.. .+....+.....+|+| |++
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCC
Confidence 4556665543 35555666788899999985 322333 3 46888899887643 3333444556789999 666
Q ss_pred EEEEEe-CCC----cEEEEECCCC---eEEEEecCC-CCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeE
Q 004785 164 IIASGS-LDH----EVRLWNASTA---ECIGSRDFY-RPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRI 230 (730)
Q Consensus 164 lLaSgS-~Dg----tVrLWDl~tg---~~i~~l~h~-~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~~~~~~~~ 230 (730)
.|+..+ .++ .+.+||+..+ +........ ......+|+|||+.|+..++ +. |+++++..... ....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEE
Confidence 555443 323 3445777653 334444332 34467899999998888773 33 55555543221 1223
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeee
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS 310 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~ 310 (730)
+..+...+....|||||++|+.+..... . ..+.+++..+++...+... ......+.
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g---------------~-----~~I~v~dl~~g~~~~Lt~~----~~~~~~p~ 377 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKG---------------V-----RQICVYDLATGRDYQLTTS----PENKESPS 377 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCC---------------C-----cEEEEEECCCCCeEEccCC----CCCccceE
Confidence 4444456778899999998887753211 0 1455555544443333221 11223689
Q ss_pred EecCCCEEEEEecCCCCCcccceeecCCCcceeeec
Q 004785 311 FVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT 346 (730)
Q Consensus 311 FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~ 346 (730)
|+|||+.|++..... ....++..++++....+|+.
T Consensus 378 wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 378 WAIDSLHLVYSAGNS-NESELYLISLITKKTRKIVI 412 (428)
T ss_pred ECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeec
Confidence 999999999865543 34578888888777766653
No 199
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.13 E-value=3.3e-10 Score=128.18 Aligned_cols=142 Identities=22% Similarity=0.227 Sum_probs=119.3
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
+|-||...|++++.+|+|++||+++.. -.|++|+..+......+.+|.-.|+.++|+| ++++|++.+.|+++.+
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSL 598 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEe
Confidence 466999999999999999999999773 4589999999988889999999999999999 9999999999999999
Q ss_pred EECCCCeEE-----EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEcc
Q 004785 177 WNASTAECI-----GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 177 WDl~tg~~i-----~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~--~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
|........ ....|..-|.+..|+|++.+++++|.|+ |+||..... +.+. ......+...|+.++|.|
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~-~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS-RFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh-hhchhccCCceeeEEeec
Confidence 988643221 1234888899999999999999999555 999998777 3322 124566788999999887
No 200
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.12 E-value=2.5e-09 Score=117.55 Aligned_cols=214 Identities=14% Similarity=0.170 Sum_probs=151.7
Q ss_pred cceecccccccccCC--CCccceeeeccCcceeec-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCC
Q 004785 35 LRNVFGLLAQREVAP--RTKHSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLS 104 (730)
Q Consensus 35 ~r~If~~~~krEis~--~~~~~~k~~wd~~~~~~s-----~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~ 104 (730)
-..||.+...|+=.. -++......|+++..... -.++...... .++..|..|...+.|..=.++.+ ...
T Consensus 287 ~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~-e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 287 DGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA-EGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred CCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe-cCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 355565554443111 233333445765554322 1223333333 33344777777777766666654 456
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 184 (730)
+|.+....++..|+..+|++++.|+.|++|+ ..+.+.... -..++.++.|+| .+ .++.|...|...+.|..+...
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEeccccee
Confidence 8999999999999999999999999999999 344433322 346788999999 66 999999999999999999877
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 185 IGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 185 i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+.....+.+++.++|+|+|.+||+|+.+ .|+||.+....... ...-.-+...|+.+.||+|++++.+.+.
T Consensus 441 v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 441 VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCceEEeccC
Confidence 7776668899999999999999999954 59999997655422 1122223489999999999998876554
No 201
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=5.8e-08 Score=109.39 Aligned_cols=211 Identities=10% Similarity=0.066 Sum_probs=136.2
Q ss_pred CeEEEEECCCCCE-EEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC--CcEEEEECCCC
Q 004785 109 STIAAAFSPDGKT-LASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD--HEVRLWNASTA 182 (730)
Q Consensus 109 ~Vt~lafSPDG~~-LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D--gtVrLWDl~tg 182 (730)
.+....|||||+. ++..+.+ ..|+++|+.+++...... ..+......|+|++..++++.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6789999999985 6655443 579999999887554433 455566789999444455555444 56888899888
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785 183 ECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258 (730)
Q Consensus 183 ~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwd 258 (730)
+......+........|+|||+.|+..++. .|+++|+.+++... ..... . ....|+|||++++.+....+
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g-~--~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHG-K--NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccCC-C--cCceECCCCCEEEEEEcCCC
Confidence 766555544434567899999988888853 38999998776422 11111 1 12489999999988775322
Q ss_pred ccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCC
Q 004785 259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS 338 (730)
Q Consensus 259 l~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~s 338 (730)
-... .+ ...+.+.+..+++...+.... ....|.|+|||+.|++.... ...+.++..++++
T Consensus 342 ~~~~---------~~-----~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 342 NEFG---------KN-----TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred cccC---------CC-----CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 1100 00 124555555444433322211 12259999999999997665 3334588888888
Q ss_pred Ccceeeec
Q 004785 339 SSSVRLLT 346 (730)
Q Consensus 339 s~~~~l~~ 346 (730)
....+|+.
T Consensus 402 ~~~~~l~~ 409 (419)
T PRK04043 402 NKSFLFPL 409 (419)
T ss_pred CeeEEeec
Confidence 77777763
No 202
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.3e-09 Score=108.99 Aligned_cols=143 Identities=23% Similarity=0.293 Sum_probs=107.5
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----CeEEEEEecCCCCcEEEEEc-cCCCCEEEEEeCCCcEEEEE
Q 004785 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFH-PLNPTIIASGSLDHEVRLWN 178 (730)
Q Consensus 104 ~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t----g~~l~~l~gH~~~V~sVafS-P~dg~lLaSgS~DgtVrLWD 178 (730)
.+|.+-|+++.|.+.|+.+|+|+.|++|+|||..+ ..+....+.|.+.|..|.|. |.=|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46888899999999999999999999999999644 35677889999999999995 55688999999999999997
Q ss_pred CCC------C-eE--EE-EecCCCCeEEEEEcCC--CCEEEEEE-CCeEEEEEcCCCccccCC------e----EEecCC
Q 004785 179 AST------A-EC--IG-SRDFYRPIASIAFHAS--GELLAVAS-GHKLYIWRYNMREETSSP------R----IVLRTR 235 (730)
Q Consensus 179 l~t------g-~~--i~-~l~h~~~V~sVafSPd--G~~LAsgS-dd~I~VWDl~t~~~~~~~------~----~l~~h~ 235 (730)
-.. + +- .. .......|+.|.|.|. |-.||+++ |+.||||+......+... . ....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 621 1 11 11 2346789999999995 55788887 455999997654332110 0 111245
Q ss_pred CCeEEEEEccC
Q 004785 236 RSLRAVHFHPH 246 (730)
Q Consensus 236 ~~V~sVaFSPd 246 (730)
....+|.|+|.
T Consensus 170 ~~~~CvsWn~s 180 (361)
T KOG2445|consen 170 QPCFCVSWNPS 180 (361)
T ss_pred CcceEEeeccc
Confidence 56778888864
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=2.9e-09 Score=113.98 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=163.7
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC---------CCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC---------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~---------~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (730)
+.+++.|++|+.|..+++|.++.- .++ .|...|.|++|....++|++|..+++|.+.|+++.+.+.++.
T Consensus 65 S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~ 144 (609)
T KOG4227|consen 65 SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN 144 (609)
T ss_pred ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec
Confidence 346899999999999999997631 133 355789999999999999999999999999999999887774
Q ss_pred --cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEE
Q 004785 147 --GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----CIGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWR 218 (730)
Q Consensus 147 --gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----~i~~l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWD 218 (730)
...+.|+.+..+| ..++|++.+.++.|.+||++... ++...........+.|+|-.. +|++.+ .+++.|||
T Consensus 145 ~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 145 ENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred ccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 2345899999999 78999999999999999998754 333334667889999999775 556665 45599999
Q ss_pred cCCCcccc-CCeEEecC---CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe--ccCCcccCC-CCeEEEec
Q 004785 219 YNMREETS-SPRIVLRT---RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA--TSPGYWRYP-PPVICMAG 286 (730)
Q Consensus 219 l~t~~~~~-~~~~l~~h---~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~--t~sG~~~~p-~~~V~l~d 286 (730)
.+...... ......+- ...-.++.|+|.|..+++--. ..|+.+..+..... ...||.+.. ....+|.+
T Consensus 224 ~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~ 303 (609)
T KOG4227|consen 224 RRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID 303 (609)
T ss_pred eccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec
Confidence 98764311 00011111 122357889999998776432 33444333322221 223554421 12233332
Q ss_pred CCCCCCCCcccccCCCCCCce-eeeEecCCCEEEEEecCCCCCccc
Q 004785 287 AHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATR 331 (730)
Q Consensus 287 ~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~~~~~~dsgs~~ 331 (730)
...++++.....+-+| .|+-..-+....++|+....++..
T Consensus 304 -----D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 304 -----DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred -----ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2235555555555566 444433455555556555554443
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=3.1e-09 Score=113.45 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=116.9
Q ss_pred CeEEEEeCCCCC-CC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---CCCCcEEEEEccCCCCE
Q 004785 91 ESLHHLRPKYCP-LS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG---HRRTPWVVRFHPLNPTI 164 (730)
Q Consensus 91 gsIrlWd~~t~~-L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g---H~~~V~sVafSP~dg~l 164 (730)
..+++++.+... +- --+..|.++.++ .++|+++=.+ .|+|||+++.+.+.++.. +...+.+++++. ++.+
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCce
Confidence 457777766432 11 134568888886 4567776555 499999999999888754 333455555555 4456
Q ss_pred EEE-Ee-CCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEEecC--CCC
Q 004785 165 IAS-GS-LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRT--RRS 237 (730)
Q Consensus 165 LaS-gS-~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~~~l~~h--~~~ 237 (730)
++. ++ ..|.|.|||+.+-+.+..+. |++.+.+++|+++|.+||++++.+ |||+.+..++.+. .+... ...
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~~~ 220 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYPVS 220 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCceeeE
Confidence 665 33 36889999999988887765 999999999999999999999755 9999999988654 22222 346
Q ss_pred eEEEEEccCCCeEEEEEe
Q 004785 238 LRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 238 V~sVaFSPdG~~Llatgs 255 (730)
|++++|+||+.+|.++++
T Consensus 221 IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EEEEEECCCCCeEEEecC
Confidence 899999999998888776
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.1e-08 Score=115.41 Aligned_cols=170 Identities=21% Similarity=0.139 Sum_probs=112.5
Q ss_pred cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEE--ECCCCeEEEEEecCC
Q 004785 79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKII--DCQTGSCLKVLHGHR 149 (730)
Q Consensus 79 d~g~~L~Sgs~---DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaS-gS~DgtVrVW--Dl~tg~~l~~l~gH~ 149 (730)
.+++.|+..+. ...|.+||+.+++ +....+.+....|+|||+.|+. .+.++...|| |+.++. +..+..+.
T Consensus 205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 283 (427)
T PRK02889 205 PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS 283 (427)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence 34555654443 2359999998763 4445566778999999998874 5667765555 555554 55566566
Q ss_pred CCcEEEEEccCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCC
Q 004785 150 RTPWVVRFHPLNPTIIASGS-LDHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMR 222 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS-~DgtVrLW--Dl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d---~I~VWDl~t~ 222 (730)
+.+....|+| +++.++..+ .++...|| |+.+++...............|+|||++|+..+. + .|++||+.++
T Consensus 284 ~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 6667789999 777666544 45565666 4455554433333334556889999999987763 2 3999999877
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+... +.. ........|+|||+.|+.+..
T Consensus 363 ~~~~----lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 363 QVTA----LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CeEE----ccC-CCCccCceECCCCCEEEEEEe
Confidence 5422 222 223467899999999888775
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.09 E-value=1.7e-08 Score=109.16 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=116.2
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCCC-CCC------CCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEE-
Q 004785 75 EAGRDARRGLASWV-EAESLHHLRPKY-CPL------SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKV- 144 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs-~DgsIrlWd~~t-~~L------~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~- 144 (730)
++...+++.|++.. .++.|.+|+.+. +.+ ..+.....+++|+|||++|++++ .++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 33444566666554 488999999863 211 12234567889999999886655 468999999976432211
Q ss_pred ----Ee-cCCCCcEEEEEccCCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEec-------CCCCeEEEEEcCCCCEEE
Q 004785 145 ----LH-GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAST--AE--CIGSRD-------FYRPIASIAFHASGELLA 207 (730)
Q Consensus 145 ----l~-gH~~~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~t--g~--~i~~l~-------h~~~V~sVafSPdG~~LA 207 (730)
.. ........++|+| ++++++++.. +++|.+||+.. ++ .+..+. .......+.|+|+|++|+
T Consensus 165 ~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 11 1123467899999 8887777665 89999999973 33 233322 112234688999999999
Q ss_pred EEE--CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 208 VAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 208 sgS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
++. ++.|.+|++...................+.+.|+|||++++++..
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 986 345999999654321101111111235668899999999888764
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.09 E-value=1.7e-09 Score=112.50 Aligned_cols=176 Identities=10% Similarity=0.159 Sum_probs=133.2
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEE-ec
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL-HG 147 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l-~g 147 (730)
...+-..|.+.+-|.+-.+||++++ +|..|...|.+++|...+ +.||+.+.||.||+||++..+.-..+ ..
T Consensus 159 ne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 159 NEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred ccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence 3345678889999999999999885 467999999999999855 47899999999999999886544333 22
Q ss_pred --CCCCcEEEEEccCCCCEEEEEeCC-CcEEEEECCCC-eEEEEe-cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcC
Q 004785 148 --HRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYN 220 (730)
Q Consensus 148 --H~~~V~sVafSP~dg~lLaSgS~D-gtVrLWDl~tg-~~i~~l-~h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~ 220 (730)
...+...++|++.+.+++++-..| ..|.|.|++.. ..+..+ +|...|+.++|.|... .|.+++|+. +-|||+.
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 134677899999889999985544 56999999974 444444 5999999999999664 888888776 9999997
Q ss_pred CCcc--ccCCeEEecCCCCeEEEEEccCC-CeEEE
Q 004785 221 MREE--TSSPRIVLRTRRSLRAVHFHPHA-APLLL 252 (730)
Q Consensus 221 t~~~--~~~~~~l~~h~~~V~sVaFSPdG-~~Lla 252 (730)
..-. ...+.........|..+.|++.. .++..
T Consensus 319 q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 319 QMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred cccccCCCCchhhhhccceeeeeeecccCCCEEEE
Confidence 6432 22233333456789999999754 44433
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.04 E-value=1.8e-08 Score=113.54 Aligned_cols=204 Identities=17% Similarity=0.181 Sum_probs=133.3
Q ss_pred CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE----------
Q 004785 89 EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV---------- 154 (730)
Q Consensus 89 ~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s---------- 154 (730)
.+..+.+||...+ +|++|++.|+|++|+.||+.+|+|+.|..|.+|+-.-.- +..+ .|++.|.|
T Consensus 31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~L 108 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQL 108 (1081)
T ss_pred cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHh
Confidence 3567889998876 689999999999999999999999999999999854221 1122 24444444
Q ss_pred -----------------------------EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCCCCeEEEEEcCC
Q 004785 155 -----------------------------VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHAS 202 (730)
Q Consensus 155 -----------------------------VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l---~h~~~V~sVafSPd 202 (730)
.+|.. |+.+++-|-.||+|.|-+-...+.+..- +.+.+|.+++|+|.
T Consensus 109 asCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 109 ASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred hhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence 44544 7888999999999988865433333332 25679999999996
Q ss_pred C-----CEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCccc
Q 004785 203 G-----ELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276 (730)
Q Consensus 203 G-----~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~ 276 (730)
. ..+++...+. +.++.+..... . ....-.-...++.+.++|.+++.++....+. +.+..|.
T Consensus 188 sg~G~~di~aV~DW~qTLSFy~LsG~~I-g---k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~-------~fTR~Gv-- 254 (1081)
T KOG1538|consen 188 SGEGRNDILAVADWGQTLSFYQLSGKQI-G---KDRALNFDPCCISYFTNGEYILLGGSDKQLS-------LFTRDGV-- 254 (1081)
T ss_pred CCCCccceEEEEeccceeEEEEecceee-c---ccccCCCCchhheeccCCcEEEEccCCCceE-------EEeecCe--
Confidence 4 3566666433 66666643321 1 0111123456889999999999887643322 2222222
Q ss_pred CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCC
Q 004785 277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHD 326 (730)
Q Consensus 277 ~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~d 326 (730)
.+.+. .....-+|.+..-|++..+.++.-+.+
T Consensus 255 -----------------rLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 255 -----------------RLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------EEeec-cccceeEEEEEEccCCceEEEEEccCe
Confidence 11111 112335667888999999998666554
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.3e-09 Score=118.03 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=111.2
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-
Q 004785 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD- 189 (730)
Q Consensus 111 t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~- 189 (730)
.+++|+.||..|++++.||++|||+..+...+.....|.+.|.++.|+| +++++++-+.| ..+|||.++|..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999888888888889999999999999 99999999999 89999999997766644
Q ss_pred --CCCCeEEEEEcCCC---CEEEEEE--C-CeEEEEEcCCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785 190 --FYRPIASIAFHASG---ELLAVAS--G-HKLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 190 --h~~~V~sVafSPdG---~~LAsgS--d-d~I~VWDl~t~~~~~--~~~~l~~h~~~V~sVaFSPdG~~Llatgsvw 257 (730)
.+..+..+.|+-|+ .+++.+. . +.|+.||+....... ...........|.+++.++||++++.++...
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 33456778898877 3333332 2 337777765443211 1122233356899999999999887776533
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=2.8e-08 Score=106.02 Aligned_cols=149 Identities=13% Similarity=0.186 Sum_probs=110.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CC
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TA 182 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg 182 (730)
+| ..|++|.|++||..|++++. |..|.|||..++..+.....-.+.+.-+.|+| ++++++.+.-|+..++|+.. +.
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~w 271 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSW 271 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccc
Confidence 44 57999999999999999987 67899999999987765544556688999999 99999999999999999543 44
Q ss_pred eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc---------CCeE--------Eec----CCCCeEEE
Q 004785 183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS---------SPRI--------VLR----TRRSLRAV 241 (730)
Q Consensus 183 ~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~---------~~~~--------l~~----h~~~V~sV 241 (730)
...+-.-..+.|...+|+|+|++|.....+.-++|.+.-.++.. .... ... ..+...++
T Consensus 272 t~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l 351 (445)
T KOG2139|consen 272 TKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL 351 (445)
T ss_pred eecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence 44443444569999999999998888876665555543222100 0000 000 13467899
Q ss_pred EEccCCCeEEEEEe
Q 004785 242 HFHPHAAPLLLTAE 255 (730)
Q Consensus 242 aFSPdG~~Llatgs 255 (730)
+|+|.|.++++.-+
T Consensus 352 awDpsGeyLav~fK 365 (445)
T KOG2139|consen 352 AWDPSGEYLAVIFK 365 (445)
T ss_pred eECCCCCEEEEEEc
Confidence 99999999998765
No 211
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.6e-08 Score=112.47 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=102.6
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEECCCC---eEEEEEecCCCCcEEEEEccC
Q 004785 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPL 160 (730)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~-----DgtVrVWDl~tg---~~l~~l~gH~~~V~sVafSP~ 160 (730)
.|.+.++..+ ++....+.....+|||||+.|+..++ |..+.+|++.++ +......++.+.....+|+|
T Consensus 212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP- 290 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP- 290 (428)
T ss_pred eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-
Confidence 4666677655 34445556678899999999887664 223445777653 33333333334456789999
Q ss_pred CCCEEEEE-eCCCcEEEE--ECCC--CeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEE
Q 004785 161 NPTIIASG-SLDHEVRLW--NAST--AECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIV 231 (730)
Q Consensus 161 dg~lLaSg-S~DgtVrLW--Dl~t--g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l 231 (730)
+++.|+.. ..++...|| ++.. ++..........+....|+|||+.|+..+.. .|++||+.+++... +
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----L 366 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----L 366 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----c
Confidence 77755554 456655555 5532 2233333344567789999999998877632 39999998876422 3
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004785 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 232 ~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
......+....|+|||+.|+.+..
T Consensus 367 t~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 367 TTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cCCCCCccceEECCCCCEEEEEEC
Confidence 333446678999999998887654
No 212
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1e-08 Score=114.78 Aligned_cols=149 Identities=20% Similarity=0.302 Sum_probs=111.6
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (730)
Q Consensus 103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg 182 (730)
+.+|++.|.++...|.|.+|++|++||+|+||.+.+|.+++.+.-. +.|.+|+|+|....-++.+..+..+.|-+-.-|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 6799999999999999999999999999999999999999988643 479999999943333333333333444332111
Q ss_pred --------------------------------------eEEEEecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcC
Q 004785 183 --------------------------------------ECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYN 220 (730)
Q Consensus 183 --------------------------------------~~i~~l~h~~~V~sVafSPdG~~LAsgSd----d~I~VWDl~ 220 (730)
.....+.|...|..+.||..|.||++... ..|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 01123457788999999999999999873 239999998
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...... .+..-.+.|..+.|+|...+++++..
T Consensus 555 K~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 555 KRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred cccccC---chhhcCCceeEEEecCCCceEEEEec
Confidence 776543 23344678999999999998877654
No 213
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.99 E-value=7.3e-08 Score=107.09 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=117.3
Q ss_pred cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCC--CeEEEEECCCCeEEEEEecCC
Q 004785 79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGD--HTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 79 d~g~~L~Sgs~D---gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~D--gtVrVWDl~tg~~l~~l~gH~ 149 (730)
.+++.|+....+ ..|.+||+.++. +..+.+.+.+++|+|||+.|+.. +.+ ..|++||+.+++. ..+..+.
T Consensus 199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~ 277 (417)
T TIGR02800 199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGP 277 (417)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCC
Confidence 345555544432 479999998763 44566677889999999987654 333 4699999988764 4444555
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCC
Q 004785 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMR 222 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~ 222 (730)
.......|+| +++.++..+. ++ .|++||+.+++..........+..+.|+|+|++|+.++.+ .|++||+.++
T Consensus 278 ~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 278 GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 5556789999 7776655443 33 5888899887765555556677788999999998888743 4899998775
Q ss_pred ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
... .+.. ........|+|||++++.+..
T Consensus 357 ~~~----~l~~-~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 357 GER----VLTD-TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CeE----EccC-CCCCCCceECCCCCEEEEEEe
Confidence 431 2222 223456689999998887765
No 214
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.1e-07 Score=106.74 Aligned_cols=169 Identities=12% Similarity=0.025 Sum_probs=112.3
Q ss_pred CCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCCC
Q 004785 80 ARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 80 ~g~~L~Sgs~D---gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~~ 150 (730)
+++.|+..+.+ ..|.+|++.++. +....+.+....|+|||++|+.. +.++ .|++||+.+++. ..+..+..
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~ 287 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPA 287 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCC
Confidence 45555544322 358888988763 44444556689999999988754 4444 688999988864 44555666
Q ss_pred CcEEEEEccCCCCEEEEEe-CCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCCc
Q 004785 151 TPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMRE 223 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS-~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~~ 223 (730)
......|+| +++.++..+ .++ .|+++|+.+++...............|+|||++|+..+. + .|++||+.+++
T Consensus 288 ~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 288 IDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 667789999 666554444 333 588889888875544332334456789999999988763 2 28899998775
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
... +.. ........|+|||+.++.+..
T Consensus 367 ~~~----lt~-~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 367 VRI----LTD-TSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EEE----ccC-CCCCCCceECCCCCEEEEEEe
Confidence 422 222 222335689999998888765
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=117.26 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=114.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC----------CeE
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT----------GSC 141 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t----------g~~ 141 (730)
.+|..|++|++|..+.+||.-..+ -.+|...|.++.|-| +.+++++|..|..|+++|+.. .+.
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~ 139 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET 139 (758)
T ss_pred CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch
Confidence 578899999999999999976543 358999999999999 567899999999999999974 234
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE-------EEe----cCCCCeEEEEEcCCCC-EEEEE
Q 004785 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-------GSR----DFYRPIASIAFHASGE-LLAVA 209 (730)
Q Consensus 142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i-------~~l----~h~~~V~sVafSPdG~-~LAsg 209 (730)
+..+..|...|..|+..|.+.+.+.+++.||+|+-+|++..... ..+ ..--...++..+|... +|++|
T Consensus 140 ~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 140 TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence 56678899999999999966699999999999999999873211 111 1123567899999665 88888
Q ss_pred ECCe-EEEEEcC
Q 004785 210 SGHK-LYIWRYN 220 (730)
Q Consensus 210 Sdd~-I~VWDl~ 220 (730)
+.+- .++||.+
T Consensus 220 gsdpfarLYD~R 231 (758)
T KOG1310|consen 220 GSDPFARLYDRR 231 (758)
T ss_pred CCCchhhhhhhh
Confidence 8666 9999953
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.96 E-value=3.8e-10 Score=129.51 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=105.6
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
+|.+|...|+|+.|...|.++++|++|..|+||..+++.++....||.+.|+.++.+. +..++++++.|..|++|-+.+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 4779999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785 182 AECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (730)
Q Consensus 182 g~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~ 220 (730)
+.++..+ +|.+.|++++|+|-- .++.++.+++||.+
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred CchHHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence 9998874 699999999999965 33336669999998
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.91 E-value=3e-09 Score=117.82 Aligned_cols=94 Identities=27% Similarity=0.373 Sum_probs=86.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~ 186 (730)
.+.|+..+|+|||++||+.+.||.+||+|+.+.+.+..++..-+...|++|+| |+++|++|+.|.-|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 45788999999999999999999999999999888877777778899999999 99999999999999999999988887
Q ss_pred E-ecCCCCeEEEEEcC
Q 004785 187 S-RDFYRPIASIAFHA 201 (730)
Q Consensus 187 ~-l~h~~~V~sVafSP 201 (730)
. .+|+.+|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 7 56999999999997
No 218
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.8e-07 Score=106.30 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=108.0
Q ss_pred CCCEEEEEe-CCC--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCCC
Q 004785 80 ARRGLASWV-EAE--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 80 ~g~~L~Sgs-~Dg--sIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~~ 150 (730)
+++.|+..+ .++ .|.+||+.+++ +....+......|+|||+.|+.. +.++ .|++||+.+++. ..+..+..
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~ 306 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRA 306 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCC
Confidence 444454333 232 58888887663 33333445678999999988754 4555 488889988764 44555656
Q ss_pred CcEEEEEccCCCCEEEE-EeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCc
Q 004785 151 TPWVVRFHPLNPTIIAS-GSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMRE 223 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaS-gS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~ 223 (730)
.....+|+| +++.++. ...++ .|+++|+.+++..............+|+|||++|+..+. +. |.++|+.+++
T Consensus 307 ~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 307 IDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 677899999 6665554 43343 477778888776554333333456799999999888763 22 6777877765
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
... +... .......|+|||+.++.+..
T Consensus 386 ~~~----lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 386 MQV----LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred eEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence 321 2222 12234589999998887664
No 219
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.85 E-value=1.8e-07 Score=107.96 Aligned_cols=216 Identities=10% Similarity=0.062 Sum_probs=147.5
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCCeE-E--
Q 004785 78 RDARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSC-L-- 142 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~~----------L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg~~-l-- 142 (730)
......++.|..+|.|.+||..... ...|..+++.+.|-.+-. -|++++.||.|..|+++.-.. .
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 3467889999999999999987542 347999999999987544 499999999999998865322 1
Q ss_pred ---EEEe------cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC---CCe-----EE-EEecCCCCeEEEEEcCCCC
Q 004785 143 ---KVLH------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAE-----CI-GSRDFYRPIASIAFHASGE 204 (730)
Q Consensus 143 ---~~l~------gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~---tg~-----~i-~~l~h~~~V~sVafSPdG~ 204 (730)
.... .-...+++++|.+.+.+.|+.|+.+|.|.--+-. ... .. ....|.+.|+++.++|=+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 1111 1123578999999889999999999998874333 222 01 1124788999999999776
Q ss_pred -EEEEEECCeEEEEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeE
Q 004785 205 -LLAVASGHKLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVI 282 (730)
Q Consensus 205 -~LAsgSdd~I~VWDl~-t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V 282 (730)
.+.+++|.+|+||... .... ...+..+...|++++|||....+++++... ..+
T Consensus 412 k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~----------------------G~l 466 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGD----------------------GNL 466 (555)
T ss_pred ceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCC----------------------Cce
Confidence 4555557789999876 3332 334555667799999999988777776411 133
Q ss_pred EEecCCCCCCCCcccccCCCCCCce-eeeEecCCCEEEE
Q 004785 283 CMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISL 320 (730)
Q Consensus 283 ~l~d~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~ 320 (730)
.+||+...+.....+.... .+.+ ...++++|+.|++
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAV 503 (555)
T ss_pred ehhhhhccccCCccccccc--ccccceeecCCCCcEEEE
Confidence 4444443333333333222 2334 5677778888887
No 220
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=9.5e-08 Score=97.60 Aligned_cols=180 Identities=13% Similarity=0.014 Sum_probs=122.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC---------C-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---
Q 004785 79 DARRGLASWVEAESLHHLRPKY---------C-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--- 141 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t---------~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--- 141 (730)
..++.++.+..+|.|-+..++. + ...+|.++|+.++|. ..+|++|++ |.|+=|.-+....
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLA 96 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhcc
Confidence 3566788888888888887653 1 246899999999998 457777754 9999987643211
Q ss_pred ---EEEE--ecCC-----CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 004785 142 ---LKVL--HGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 142 ---l~~l--~gH~-----~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS 210 (730)
+... .-|. ..|+++-..| ..+-++.++.|+.++-||+.+|+....+ +|.+.|.++.--.....+.+|+
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence 1111 1122 3588999999 6666666679999999999999998886 5999999999844444455666
Q ss_pred -CCeEEEEEcCCCccccCCeE------EecC-CCCeEEEEEccCCCeEEEEEe----eCCccCCCc
Q 004785 211 -GHKLYIWRYNMREETSSPRI------VLRT-RRSLRAVHFHPHAAPLLLTAE----VNDLDSSES 264 (730)
Q Consensus 211 -dd~I~VWDl~t~~~~~~~~~------l~~h-~~~V~sVaFSPdG~~Llatgs----vwdl~s~~~ 264 (730)
|+.++|||.++.+.+..... +..| ..+|-+++- +..+++++++ +|.+++.++
T Consensus 176 EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~ 239 (325)
T KOG0649|consen 176 EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSES 239 (325)
T ss_pred CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCc
Confidence 66699999999986541111 1111 234455544 4556666554 777765554
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=104.85 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=112.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEE--
Q 004785 81 RRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCL-- 142 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~--------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l-- 142 (730)
.-.++.|-++|.+.+||+.++ ....|...|.++.|.+.-..=++|+.+..+..|+++.. .+.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 345668889999999999875 24579999999999986555677888888989987543 221
Q ss_pred EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEc
Q 004785 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRY 219 (730)
Q Consensus 143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl 219 (730)
..++-..-.|..+.+-| |+++++|++.|+.||+|..++..++..+. |...|++++|+|+..++|.++.| +|.+|++
T Consensus 245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 12222234588899999 99999999999999999999999998876 88999999999999999999954 5999986
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=1.6e-07 Score=99.05 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=118.7
Q ss_pred eeccCcceee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeC
Q 004785 57 RLLGETARKC--SGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHG 127 (730)
Q Consensus 57 ~~wd~~~~~~--s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~~LaSgS~ 127 (730)
..||+....+ ...|..-+-+..-.+.+|+.. .+++|.+|...... ....+..+.+++-..+..+||.-+.
T Consensus 78 iIWDD~k~~~i~el~f~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFNSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred EEEecccCcEEEEEEeccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 3466433322 223333333444455555544 46788999876431 1122334555554445555655443
Q ss_pred -CCeEEEEECCCCeE--EEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-EEEEECCCCeEEEEec---CCCCeEEEEEc
Q 004785 128 -DHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRD---FYRPIASIAFH 200 (730)
Q Consensus 128 -DgtVrVWDl~tg~~--l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~i~~l~---h~~~V~sVafS 200 (730)
-|.|+|-|+...+. ...+..|...|.|++.+- +|.++||+|..|| |||||..+|+.+..+. ....|++++||
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 68999999977665 477899999999999998 9999999999998 7999999999998875 45689999999
Q ss_pred CCCCEEEEEECCe-EEEEEcCCCcc
Q 004785 201 ASGELLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 201 PdG~~LAsgSdd~-I~VWDl~t~~~ 224 (730)
||+.+||++||.+ |+||.++....
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecCCC
Confidence 9999999999865 99999977543
No 223
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1e-07 Score=107.02 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=133.3
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCC--------
Q 004785 73 IFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTG-------- 139 (730)
Q Consensus 73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg-------- 139 (730)
..+.....|..|++|++||+|++|.+.+++ ...-.+.|.|++|+|.+. .||++-.+. +.|.+..-|
T Consensus 404 r~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t 482 (733)
T KOG0650|consen 404 RSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPT 482 (733)
T ss_pred EEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcch
Confidence 334455588999999999999999999873 223355799999999665 455543332 444443111
Q ss_pred -----------------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---CcEEEEECCCCeEEEE
Q 004785 140 -----------------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGS 187 (730)
Q Consensus 140 -----------------------------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~tg~~i~~ 187 (730)
.-+...-.|...|..|.||. .|++|++...| ..|.|.++.......-
T Consensus 483 ~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~P 561 (733)
T KOG0650|consen 483 KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSP 561 (733)
T ss_pred hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCc
Confidence 00122234788899999999 99999987654 5699999987766554
Q ss_pred e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 188 R-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 188 l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
| ...+.|..+.|+|...+|++++...|+|||+.....+. .+.....+|..++.+|.|..|++++.
T Consensus 562 F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvK---kL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 562 FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVK---KLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred hhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHH---HHhcCCeeeeeeeecCCCCeEEEecC
Confidence 5 35678999999999999999999999999998876544 45566778999999999998888775
No 224
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=5.1e-08 Score=108.82 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=125.1
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC--------------CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 004785 68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPK--------------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKI 133 (730)
Q Consensus 68 ~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~--------------t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrV 133 (730)
+....+.+.....+..+++|+-|++|+.|++. .+.+.||.+.|+.+++|.....|++++.||+|++
T Consensus 343 H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 343 HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred ccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEe
Confidence 33445666777899999999999999999542 1358899999999999999899999999999999
Q ss_pred EECCCCeE--------------------------------------------EEEEe-------cCCCCcEEEEEccCCC
Q 004785 134 IDCQTGSC--------------------------------------------LKVLH-------GHRRTPWVVRFHPLNP 162 (730)
Q Consensus 134 WDl~tg~~--------------------------------------------l~~l~-------gH~~~V~sVafSP~dg 162 (730)
|+...... +..+. .-...+.-+.++| +.
T Consensus 423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~ 501 (577)
T KOG0642|consen 423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TA 501 (577)
T ss_pred eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CC
Confidence 98744322 00000 0013356688889 88
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785 163 TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE 224 (730)
Q Consensus 163 ~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~ 224 (730)
.+.+++..|+.|+++|..+++.+.. ..|...+.++++.|+|-+|.+++ ++.+++|.+.....
T Consensus 502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 502 DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999999999999998876 45889999999999999999999 55599998866554
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.81 E-value=3.1e-08 Score=116.87 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=118.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCcE
Q 004785 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPW 153 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V~ 153 (730)
...-.+++++--+.|.+|+.... .+.+|.+.|..+.|+-||+++++.|+|+++++|++++.+... ..-+|...|+
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence 35567888888999999997632 488999999999999999999999999999999999988775 6678999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-CCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMR 222 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~ 222 (730)
.+.|+| + .+++++.|.+.++|+....+.....+| .+.|..++.+++...++++++++ +++||+...
T Consensus 223 ~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999 4 999999999999997764444333344 45799999999888888888555 999998654
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.77 E-value=3.2e-08 Score=101.98 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=110.5
Q ss_pred CCCCCeEEEEECC-CCC--EEEEEeCCCeEEEEECCCCeEE----------EEEecCCCCcEEEEEccCCCCEEEEEeCC
Q 004785 105 PPPRSTIAAAFSP-DGK--TLASTHGDHTVKIIDCQTGSCL----------KVLHGHRRTPWVVRFHPLNPTIIASGSLD 171 (730)
Q Consensus 105 gH~~~Vt~lafSP-DG~--~LaSgS~DgtVrVWDl~tg~~l----------~~l~gH~~~V~sVafSP~dg~lLaSgS~D 171 (730)
+..+.+.|..+.. +++ +|+.|-++|.|.+||+.++..+ ..+..|..+|.++.+.+ .-+.=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcc
Confidence 3456677777655 343 4566777999999999998433 34457999999999987 55555677888
Q ss_pred CcEEEEECCCC--eEEEE--ec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785 172 HEVRLWNASTA--ECIGS--RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 172 gtVrLWDl~tg--~~i~~--l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
..+..|++... .+... +. .+-.|..+..-||+++||+++ |++||||..++...+. .+.-|+..|++++|+|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSP 303 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCC
Confidence 88888988643 32211 11 234688899999999999999 6679999999988654 7888999999999999
Q ss_pred CCCeEEEEEe
Q 004785 246 HAAPLLLTAE 255 (730)
Q Consensus 246 dG~~Llatgs 255 (730)
|...+++++.
T Consensus 304 d~~lmAaask 313 (323)
T KOG0322|consen 304 DCELMAAASK 313 (323)
T ss_pred CCchhhhccC
Confidence 9886666654
No 227
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.8e-07 Score=102.58 Aligned_cols=171 Identities=15% Similarity=0.061 Sum_probs=139.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEEC--------------------CCCCEEEEEeCCCeEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFS--------------------PDGKTLASTHGDHTVK 132 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~-------gH~~~Vt~lafS--------------------PDG~~LaSgS~DgtVr 132 (730)
....++....||.+++|+....++. .-.+.-++..|. -|-..|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3456777788999999998766322 223344455552 2333678888899999
Q ss_pred EEECCCCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 004785 133 IIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA 209 (730)
Q Consensus 133 VWDl~tg~~l~~l~--gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsg 209 (730)
+|++..|+....+. +|.+.|.++.|+. +-..|.|++.|+.+..|+....+.+.... .+..+.+++.+|||+.|+++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999999887775 6999999999998 88999999999999999999998888765 56678999999999999988
Q ss_pred ECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccC-----CCeEEEEEe
Q 004785 210 SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH-----AAPLLLTAE 255 (730)
Q Consensus 210 Sdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPd-----G~~Llatgs 255 (730)
+ +.|++||+++.+.+. .+.+|.+.|+.+.|.-+ |.+++++..
T Consensus 163 s-~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 163 S-RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred c-ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccc
Confidence 5 469999999998765 88999999999999887 888887654
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.77 E-value=2.3e-07 Score=110.98 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=138.1
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--e----
Q 004785 78 RDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--S---- 140 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~---- 140 (730)
++.+..+++|+.||+|++|+...- ++..-...+.++.+.+.+..+|.++.||.|++.++... +
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 345589999999999999997531 12224567889999999999999999999999998762 1
Q ss_pred -EEEEE--ecCCCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEECCe
Q 004785 141 -CLKVL--HGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHK 213 (730)
Q Consensus 141 -~l~~l--~gH~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd~ 213 (730)
..+.. +....-|..-+|...... .++.+..-+.|..||+++......++ ..+.|++++.+|.+.+++.|+..+
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 11111 222222333444443444 77788888999999999877666554 357899999999999999999655
Q ss_pred -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC---eEEEEEe-------eCCccCCCcceeEeccCC
Q 004785 214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-------VNDLDSSESSLTLATSPG 273 (730)
Q Consensus 214 -I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~---~Llatgs-------vwdl~s~~~~~~l~t~sG 273 (730)
+-+||++-+..+. ....++..+++.+..+|-.+ ..++++. .|++..+.+...+...++
T Consensus 1218 ~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPIL--SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred eEEEEEeecCceee--cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence 9999999887644 23445567888887777443 4444443 788887777777766533
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=9.9e-08 Score=112.46 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=126.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCC
Q 004785 81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRT 151 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~~~ 151 (730)
.+.|.+.++-..|++||+...+ -.+-...|+++.-+- .|+.|+.|-.||.|++||.+.. ..+..++.|...
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 3445555557889999998653 223455577776655 5799999999999999998764 356778889887
Q ss_pred --cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785 152 --PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DF---YRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 152 --V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l---~h---~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~ 223 (730)
|..+.+.+.+-..+++|+.||.|++||++.......+ .| .+..+++..|++...+|+|+...|+||++....
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 9999999855557999999999999999985322221 12 335899999999999999999779999986554
Q ss_pred ccc---CCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 224 ETS---SPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 224 ~~~---~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
... ...........+.+++|+|..-.++++
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 311 011222234578999999987755544
No 230
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.6e-06 Score=101.28 Aligned_cols=213 Identities=13% Similarity=0.136 Sum_probs=140.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC---CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
+.+.++ +..+..|++|...++ .+.+|...++.+.+.|.. .++++++.||+|++||...+..++.+..+.. +
T Consensus 27 D~k~l~-~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v 104 (792)
T KOG1963|consen 27 DAKFLF-LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-V 104 (792)
T ss_pred CCcEEE-EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-e
Confidence 334443 456788999999887 488999999999999843 4677999999999999998887777653321 1
Q ss_pred EEE-----------------------------------------------------------EEccCCCCEEEEEeCCCc
Q 004785 153 WVV-----------------------------------------------------------RFHPLNPTIIASGSLDHE 173 (730)
Q Consensus 153 ~sV-----------------------------------------------------------afSP~dg~lLaSgS~Dgt 173 (730)
..+ .+++ .+.+ ...-.+..
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge~-~~i~~~~~ 182 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGEF-KGIVHMCK 182 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-CceE-EEEEEeee
Confidence 111 1111 1111 11223344
Q ss_pred EEEEECCCCeEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC-CccccCCeEEecCCCCeEEEEEccC
Q 004785 174 VRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM-REETSSPRIVLRTRRSLRAVHFHPH 246 (730)
Q Consensus 174 VrLWDl~tg~~i~~-----l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t-~~~~~~~~~l~~h~~~V~sVaFSPd 246 (730)
+.+|+..++..... ..|.-.+++.++||+++++|++. +|+|.+|.--. .........+.-|...|.++.|++|
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence 66777766441111 23555689999999999999998 56699996543 2222345678889999999999999
Q ss_pred CCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEec
Q 004785 247 AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT 323 (730)
Q Consensus 247 G~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~ 323 (730)
|.+|+++|.. .++.+|...++....|+. ...+++...+|||+....+...
T Consensus 263 G~~LlSGG~E-----------------------~VLv~Wq~~T~~kqfLPR----Lgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 263 GAYLLSGGRE-----------------------GVLVLWQLETGKKQFLPR----LGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred CceEeecccc-----------------------eEEEEEeecCCCcccccc----cCCeeEEEEEcCCCCeEEEEec
Confidence 9999887742 134444444444333222 3446667777788777666443
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=2.7e-08 Score=108.88 Aligned_cols=167 Identities=18% Similarity=0.237 Sum_probs=133.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
-.-.|+++++.|-++.-|+.++++ ..-.+.+..+.-+|-...+-+|...|+|.+|.-...+++..+..|.++|.+|
T Consensus 220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 345677888889999999998854 3457788999999988899999999999999999999998999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-c-cccCCeEEec
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-E-ETSSPRIVLR 233 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~-~-~~~~~~~l~~ 233 (730)
++.+ ++++++|.+.|..|+|||+++-..+.++........++||..| +||.+-++.|.||.-... . ....+.....
T Consensus 300 Av~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 300 AVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred EECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence 9999 9999999999999999999988776666556677888888655 566666777999953222 1 1111222223
Q ss_pred CCCCeEEEEEccCCC
Q 004785 234 TRRSLRAVHFHPHAA 248 (730)
Q Consensus 234 h~~~V~sVaFSPdG~ 248 (730)
....|..+.|.|-..
T Consensus 378 ~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYED 392 (545)
T ss_pred cCcccccceeccHHH
Confidence 356899999999776
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=4e-07 Score=107.53 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=126.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD 135 (730)
.+.....++...+.+++.||.|++|+-... .+.+-.+.=.-++|.....+|+++++-..|+|||
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence 344444566778889999999999984311 1122222224567877666677777788999999
Q ss_pred CCCCeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE---EEE-ecCCCC--eEEEEEcCCCC-EEE
Q 004785 136 CQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS-RDFYRP--IASIAFHASGE-LLA 207 (730)
Q Consensus 136 l~tg~~l~~l~-gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~-l~h~~~--V~sVafSPdG~-~LA 207 (730)
+....++..+. +-...|+++.-+-..+++++.|..||.|++||.+.... +.. ..|... |..+.+.+.|- .|+
T Consensus 1194 a~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred cccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence 98887776663 34445777776655789999999999999999987543 222 346655 99999999776 488
Q ss_pred EEE-CCeEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEEEE
Q 004785 208 VAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 208 sgS-dd~I~VWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPdG~~Llatg 254 (730)
+|+ +|.|++||++...... ......|. +.++++..+++...+++++
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eeccCCeEEEEecccCcccc-cceeeeccccCccceeeeeccCCCeeeecC
Confidence 888 5569999999853322 22333332 2589999999998555444
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.73 E-value=2e-08 Score=109.79 Aligned_cols=195 Identities=15% Similarity=0.103 Sum_probs=161.0
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785 69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (730)
Q Consensus 69 s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g---H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (730)
.|+...+.-..+|..+..++..|-|-.+|-.+..|.. -...|.++.|-.+.++||++ ....++||| ..|..+..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCL 206 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeeh
Confidence 4566666677889999999999999999988775542 24568999999998899887 456899999 678889999
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004785 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE 223 (730)
Q Consensus 146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~ 223 (730)
+.|.. |..+.|-| ..-+|++++..|.++.-|+.+|+.+..+. ..+.+..++-.|-+-.+-+|.. +.|.+|.....+
T Consensus 207 k~~~~-v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRHIR-VARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhcCc-hhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 87754 89999999 88899999999999999999999988875 4567788888898888888874 559999988877
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEec
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT 270 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t 270 (730)
.+. .+..|.+.|.+|++.++|+|+++++- +||++....+.++.+
T Consensus 285 PLv---KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 285 PLV---KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred hHH---HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 544 67889999999999999999999875 898887666555554
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=7.6e-06 Score=88.00 Aligned_cols=165 Identities=13% Similarity=0.188 Sum_probs=119.1
Q ss_pred CCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCC--CeEE--EEEecCCCCcEEE
Q 004785 90 AESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQT--GSCL--KVLHGHRRTPWVV 155 (730)
Q Consensus 90 DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~t--g~~l--~~l~gH~~~V~sV 155 (730)
++-|..|++.+. ++..+.+..+-|+|+|++++|+++-. ++.|-.|.++. |+.. ........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 566888887743 35578889999999999999999865 46676666654 5532 2222233344789
Q ss_pred EEccCCCCEEEEEeC-CCcEEEEECCC-CeE---EEEecCCCC----------eEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004785 156 RFHPLNPTIIASGSL-DHEVRLWNAST-AEC---IGSRDFYRP----------IASIAFHASGELLAVAS--GHKLYIWR 218 (730)
Q Consensus 156 afSP~dg~lLaSgS~-DgtVrLWDl~t-g~~---i~~l~h~~~----------V~sVafSPdG~~LAsgS--dd~I~VWD 218 (730)
++++ ++++++++.. -+.|.++-+++ |.. +....|.+. +....|.|++++|++.. .|+|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 9999 8888888775 57899999876 433 333445544 88999999999999987 57799999
Q ss_pred cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+..+................+.|.|+|++++..+..+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence 9976543322223355667899999999998777665
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.71 E-value=2.4e-07 Score=98.05 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=104.6
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-C
Q 004785 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F 190 (730)
Q Consensus 112 ~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h 190 (730)
-+.|||+|+++|+++.- .+.|-|.++-+..+.|.. -+.|..+.|..+.-.++.....|+.|.+|++...+-...++ .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 47899999999999766 777778877665544433 35577899998444455557789999999999888776665 5
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 191 YRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 191 ~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
...+.+++|||||+.|...+ +-+|.||.+.+.+... +......+..++|+|||++.+....
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence 67899999999998776666 4559999998876522 3333556789999999998776654
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.68 E-value=1.9e-06 Score=95.69 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=114.2
Q ss_pred EEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC
Q 004785 85 ASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160 (730)
Q Consensus 85 ~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~ 160 (730)
++-..++.|.+.|..+.+ +......-..+.|+|||+++++++.|+.|.++|+.+++.+..++... ....+++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~- 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSP- 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE---
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcC-
Confidence 455567888888887763 22222223457899999999999999999999999999999997554 467899999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEecC--------CCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCe
Q 004785 161 NPTIIASG-SLDHEVRLWNASTAECIGSRDF--------YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR 229 (730)
Q Consensus 161 dg~lLaSg-S~DgtVrLWDl~tg~~i~~l~h--------~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~ 229 (730)
++++++++ ..++++.++|.++.+.++.+.. ...+.++..+|....+++.-. +.|.+.|+...+... .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--V 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--E
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--e
Confidence 77777665 4689999999999998887642 346788888998886665553 448888887764322 2
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 230 IVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 230 ~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.............|+|++++++++..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred eeecccccccccccCcccceeeeccc
Confidence 34445667889999999999887643
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=3.4e-07 Score=102.53 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=131.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe------cCCC
Q 004785 81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH------GHRR 150 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~------gH~~ 150 (730)
.-.|..++....|..++++.+. +....+.++++..++-..+|++|+.||.|-.||.++...+..+. .|.+
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred CccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 3456667777778888888774 44566889999999988999999999999999998876655553 2333
Q ss_pred -----CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC--CCeEEEEEcCC--CCEEEEEECCeEEEEEcCC
Q 004785 151 -----TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--RPIASIAFHAS--GELLAVASGHKLYIWRYNM 221 (730)
Q Consensus 151 -----~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~--~~V~sVafSPd--G~~LAsgSdd~I~VWDl~t 221 (730)
.|+++.|+. ++-.++.|..+|.|.|||+++.+++....|. -+|..+.|.+. ++.|++.....++|||-.+
T Consensus 225 ~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 225 GDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT 303 (703)
T ss_pred ccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhccccc
Confidence 499999997 7889999999999999999999998887665 47889999775 3456555444599999998
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
++... .......+..+++-|++-.++++
T Consensus 304 Gk~~a----siEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 304 GKPMA----SIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred CCcee----eccccCCcCceeeecCCceEEEe
Confidence 87533 44555669999999988855554
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.2e-06 Score=94.48 Aligned_cols=172 Identities=18% Similarity=0.161 Sum_probs=130.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEECC-CCCEEEEEeCC--CeEEEEECCCCeEEEEEecCC
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFSP-DGKTLASTHGD--HTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~-------gH~~~Vt~lafSP-DG~~LaSgS~D--gtVrVWDl~tg~~l~~l~gH~ 149 (730)
....|+++..+|.+++|..+.+.+. .-...+..+.-++ +..++++|+.. ..++|||++..+.+..-+.-.
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 4567889999999999998854211 1123466666666 34466778888 889999999886665444322
Q ss_pred ---------CCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCC-eEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EE
Q 004785 150 ---------RTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK-LY 215 (730)
Q Consensus 150 ---------~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg-~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~ 215 (730)
-.++.+.|-+ + ...|+++..-+.|++||.+.+ +++..+. ...++.++...|+|+++++|...+ +.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 1355788988 6 789999999999999999975 4566666 457899999999999999998655 99
Q ss_pred EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.||++.+.... ..+.+..+.|+++..+|.+++++.++
T Consensus 273 ~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 273 KFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred eecccCceeec--cccCCccCCcceEEEcCCCceEEeec
Confidence 99999988644 23667788999999999999655554
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.63 E-value=6.6e-06 Score=87.35 Aligned_cols=141 Identities=17% Similarity=0.164 Sum_probs=95.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCC----CCCCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCC
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKY----CPLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t----~~L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
.+..|.-..|.....++.|.+|++.. +++..-..++..+.|||||+.|...+ .|-.|.||.+.+.+... ++-.+
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK 133 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPK 133 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccc
Confidence 34445556666777899999999864 46778888999999999997666555 48899999998876432 33334
Q ss_pred CCcEEEEEccCCCCEEEEEeC-C-----------------------------------CcEEEEECCCCeEEEEecCCCC
Q 004785 150 RTPWVVRFHPLNPTIIASGSL-D-----------------------------------HEVRLWNASTAECIGSRDFYRP 193 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~-D-----------------------------------gtVrLWDl~tg~~i~~l~h~~~ 193 (730)
..+..++|+| ++++.+.++. | +.+-+||---.-.+..+.-.-.
T Consensus 134 ~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 134 TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG 212 (447)
T ss_pred cCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence 4568899999 8887776543 2 1122333211111112223346
Q ss_pred eEEEEEcCCCCEEEEEECCe-EEEE
Q 004785 194 IASIAFHASGELLAVASGHK-LYIW 217 (730)
Q Consensus 194 V~sVafSPdG~~LAsgSdd~-I~VW 217 (730)
+..++|+|.+++|++|+.|. +||-
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhh
Confidence 88999999999999999553 5553
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.63 E-value=2.1e-05 Score=86.25 Aligned_cols=164 Identities=14% Similarity=0.188 Sum_probs=108.9
Q ss_pred CeEEEEeC--CCCCCC-----CCCCCeEEEEECCCCCEEEEEeC----CCeEEEEECCC--Ce--EEEEEecCCCCcEEE
Q 004785 91 ESLHHLRP--KYCPLS-----PPPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQT--GS--CLKVLHGHRRTPWVV 155 (730)
Q Consensus 91 gsIrlWd~--~t~~L~-----gH~~~Vt~lafSPDG~~LaSgS~----DgtVrVWDl~t--g~--~l~~l~gH~~~V~sV 155 (730)
+.|..|++ ++++|. .-......++++|++++|++... ++.|..|++.. ++ .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 45666655 333221 12334567899999999999977 46898888765 33 233333344456779
Q ss_pred EEccCCCCEEEEEe-CCCcEEEEECCC-CeEEEE---ec-----------CCCCeEEEEEcCCCCEEEEEE--CCeEEEE
Q 004785 156 RFHPLNPTIIASGS-LDHEVRLWNAST-AECIGS---RD-----------FYRPIASIAFHASGELLAVAS--GHKLYIW 217 (730)
Q Consensus 156 afSP~dg~lLaSgS-~DgtVrLWDl~t-g~~i~~---l~-----------h~~~V~sVafSPdG~~LAsgS--dd~I~VW 217 (730)
+++| ++++++++. .+++|.++++.. |..... +. ......++.|+|||++|++.. .+.|++|
T Consensus 93 ~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 93 AVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 9999 777777776 589999999987 443322 21 234678999999999999887 4569999
Q ss_pred EcCCCcc-ccC-CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 218 RYNMREE-TSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 218 Dl~t~~~-~~~-~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
++..... +.. ...........+.+.|+|+|+++.+..+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC
Confidence 9977652 211 1123345677899999999998887765
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=2.1e-06 Score=96.40 Aligned_cols=157 Identities=13% Similarity=0.234 Sum_probs=117.2
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC
Q 004785 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191 (730)
Q Consensus 112 ~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~ 191 (730)
+++++.-..-|+.++....|+-++++.|+.+..|+...+.+++|..++ -..+|++|+.||.|..||.++...+..+...
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc
Confidence 344443222344455556788899999999999998889999999999 8899999999999999999988776665422
Q ss_pred ------------CCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecC--CCCeEEEEEccC--CCeEEEEE
Q 004785 192 ------------RPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPH--AAPLLLTA 254 (730)
Q Consensus 192 ------------~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPd--G~~Llatg 254 (730)
..|+++.|+-+|-.+++|+. +.|.|||++..+.+ ....| .-+|..+.|.+. +..+++..
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl----~~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL----LVKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce----eecccCCccceeeecccccCCCceEEecc
Confidence 24999999999999999985 55999999998753 35555 447888999775 34455443
Q ss_pred e----eCCccCCCcceeEeccCC
Q 004785 255 E----VNDLDSSESSLTLATSPG 273 (730)
Q Consensus 255 s----vwdl~s~~~~~~l~t~sG 273 (730)
+ +|+-..+.....+....+
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSD 315 (703)
T ss_pred hHHhhhcccccCCceeeccccCC
Confidence 3 888777776655544433
No 242
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.60 E-value=1e-06 Score=101.84 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=121.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCC----------CC------CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC---Ce-
Q 004785 82 RGLASWVEAESLHHLRPKYCP----------LS------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT---GS- 140 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~~----------L~------gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t---g~- 140 (730)
..+++++.||+|..|+.+.-. .. .....+++++|.+ +-..++.|+++|.|..-+-.. ..
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 569999999999999876320 11 2234689999998 677899999999998733222 21
Q ss_pred ----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CCeEEEEec-CCCCeEEEEEcCCCC-EEEEEE-CC
Q 004785 141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRD-FYRPIASIAFHASGE-LLAVAS-GH 212 (730)
Q Consensus 141 ----~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~i~~l~-h~~~V~sVafSPdG~-~LAsgS-dd 212 (730)
....+..|.+.|+++.++|....+|++++ |.+|+||.-. ...++..+. +...+.+++|||--. .++++. ++
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 23355678899999999997778888877 9999999987 555555544 556699999999776 444554 45
Q ss_pred eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 213 ~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.|.|||+....... .....-+......+.|+++|+.++++.
T Consensus 465 ~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred ceehhhhhccccCC-cccccccccccceeecCCCCcEEEEec
Confidence 59999997765422 122223355667888898899655543
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.59 E-value=2.9e-06 Score=89.70 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=111.5
Q ss_pred CCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCcEEEEEccC-CCCE
Q 004785 90 AESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPL-NPTI 164 (730)
Q Consensus 90 DgsIrlWd~~t~~-L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH~~~V~sVafSP~-dg~l 164 (730)
..+|-+||-...+ + ..-...|.++.+++| +|++. ....|+||.+. +.+.++.+.....+=--.+..|. +..+
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 4568888833221 1 134567888888754 45554 45799999987 45666666433211112344442 2334
Q ss_pred EEE-EeCCCcEEEEECCCCeE---EEEecCCCCeEEEEEcCCCCEEEEEEC-Ce-EEEEEcCCCccccCCeEEecCCCCe
Q 004785 165 IAS-GSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASG-HK-LYIWRYNMREETSSPRIVLRTRRSL 238 (730)
Q Consensus 165 LaS-gS~DgtVrLWDl~tg~~---i~~l~h~~~V~sVafSPdG~~LAsgSd-d~-I~VWDl~t~~~~~~~~~l~~h~~~V 238 (730)
|+. |-.-|.|+|-|+...+. .....|...|.+++.+-+|..||++|. |+ |||||..+++.+.+. ........|
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~-RRG~d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL-RRGVDRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee-ecCCchheE
Confidence 443 55678999999987655 555679999999999999999999995 44 999999999876521 112235689
Q ss_pred EEEEEccCCCeEEEEEe
Q 004785 239 RAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 239 ~sVaFSPdG~~Llatgs 255 (730)
++++|||+..+|+++++
T Consensus 230 y~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSD 246 (346)
T ss_pred EEEEeCCCccEEEEEcC
Confidence 99999999998888765
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.58 E-value=2.5e-06 Score=94.70 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=95.5
Q ss_pred CEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEE
Q 004785 120 KTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIA 198 (730)
Q Consensus 120 ~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVa 198 (730)
+++ ++-..++.|.+.|..+.+.+..+.........+.|+| ++++++.++.|+.|.++|+.+++.+..+.......+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 444 4455689999999999999999986655444578999 89999999999999999999999999998888889999
Q ss_pred EcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEE
Q 004785 199 FHASGELLAVAS--GHKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 199 fSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~----~h~~~V~sVaFSPdG~~Llatg 254 (730)
+++||++++++. .+.+.|+|..+.+.+....... .....+.++..+|....++++.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 999999999987 5679999999887654111100 0234677888899888666553
No 245
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.57 E-value=6.4e-06 Score=98.99 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=109.9
Q ss_pred CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc
Q 004785 102 PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt 173 (730)
.|..|...|..++.+++ +.+|++||+||+||+||++.- +...++.-....+.++.+.+ +++.+|.++.||.
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGS 1121 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCe
Confidence 46789999999999884 599999999999999998541 23334444567789999999 8999999999999
Q ss_pred EEEEECCCC--e-----EEEEec--CCCCeEE-EEEcC-CCC-EEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEE
Q 004785 174 VRLWNASTA--E-----CIGSRD--FYRPIAS-IAFHA-SGE-LLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRA 240 (730)
Q Consensus 174 VrLWDl~tg--~-----~i~~l~--h~~~V~s-VafSP-dG~-~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~s 240 (730)
|++.++... + +....+ ..+.+.+ -+|.. .+. .|+.+.+ ++|..||+++....... ......+.|++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-k~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-KNQLRHGLVTS 1200 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-hcCccccceeE
Confidence 999998752 1 111111 2233322 23332 233 5666665 55999999987654422 12223468999
Q ss_pred EEEccCCCeEEEEEe-----eCCcc
Q 004785 241 VHFHPHAAPLLLTAE-----VNDLD 260 (730)
Q Consensus 241 VaFSPdG~~Llatgs-----vwdl~ 260 (730)
++.+|.+.+++.+.. .||++
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEee
Confidence 999999998887654 66666
No 246
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=1.3e-05 Score=90.61 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=118.5
Q ss_pred CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-EEEEEeC---CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC
Q 004785 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSL---DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE 204 (730)
Q Consensus 129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-lLaSgS~---DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~ 204 (730)
..|.+-|..... .+.+.... ......|+| +++ +++..+. +..|+++|+.+++........+.+....|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 356665654333 34343333 677899999 665 4554433 3569999999998877776667777889999999
Q ss_pred EEEEEEC--C--eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCC
Q 004785 205 LLAVASG--H--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP 280 (730)
Q Consensus 205 ~LAsgSd--d--~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~ 280 (730)
.|+...+ + .|+++|+..++.. .+..+........|+|||+.|+.+++.. |. +
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---------------g~-----~ 301 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVSDRL---------------GY-----P 301 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEECCC---------------CC-----c
Confidence 7776552 2 3999998776532 2333333334568999999998877421 11 3
Q ss_pred eEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCC----C-cccceeecCCCcceeeec
Q 004785 281 VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDS----G-ATRTQQSLRSSSSVRLLT 346 (730)
Q Consensus 281 ~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~ds----g-s~~~~~~~~ss~~~~l~~ 346 (730)
.++..+..++....+... + ...+.|||||++|++.....+. + ..++..++++...++|+.
T Consensus 302 ~Iy~~dl~~g~~~rlt~~--g----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH--G----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred eEEEEECCCCCeEeCccC--C----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 566666555444333221 1 1135899999999997654432 2 467788887777666654
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=1.9e-06 Score=102.04 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=132.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCC-----eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP-L--SPPPRS-----TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~-L--~gH~~~-----Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~ 150 (730)
...+.++.+..++.+-+||..... + ..+... ..-+-++++.-++++|+--+.|.+|+....+.-..+.+|.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 356778888999999999987552 1 122222 22334566777899999999999999873332235899999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS 227 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~--~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~ 227 (730)
.|..+.|+- ++.++++.|.|.++++|++.+.+... -++|..+|..++|+|+ .+++++. -..++|+.+.....
T Consensus 177 ~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-- 251 (967)
T KOG0974|consen 177 SIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-- 251 (967)
T ss_pred ceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh--
Confidence 999999998 99999999999999999999987665 3789999999999998 7888884 55999976654432
Q ss_pred CeEEecC-CCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785 228 PRIVLRT-RRSLRAVHFHPHAAPLLLTAEVNDLD 260 (730)
Q Consensus 228 ~~~l~~h-~~~V~sVaFSPdG~~Llatgsvwdl~ 260 (730)
.+.+| ...+..++..++...+++.+.+..++
T Consensus 252 --~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 252 --VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred --hhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 45555 56789999988877666666533333
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.50 E-value=3.1e-05 Score=84.98 Aligned_cols=181 Identities=16% Similarity=0.175 Sum_probs=114.8
Q ss_pred EEEEecCCCEEEEEe-CCCeEEEEeCCC-CCC-----------------CCCCCCeEEEEECCCCCEEEEEeC-CCeEEE
Q 004785 74 FEAGRDARRGLASWV-EAESLHHLRPKY-CPL-----------------SPPPRSTIAAAFSPDGKTLASTHG-DHTVKI 133 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs-~DgsIrlWd~~t-~~L-----------------~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrV 133 (730)
-.+...+++.|+... .++.|.++++.. +.+ .......+++.|+|||++|++... ...|.+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 344445566666555 578888888764 211 112345789999999999888744 348999
Q ss_pred EECCCCe--EE--EEEe-cCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECC--CCeEEE--Eec-----C--CCCeEE
Q 004785 134 IDCQTGS--CL--KVLH-GHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNAS--TAECIG--SRD-----F--YRPIAS 196 (730)
Q Consensus 134 WDl~tg~--~l--~~l~-gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~--tg~~i~--~l~-----h--~~~V~s 196 (730)
|++.... .. ..++ ........+.|+| +++++ +....+++|.++++. +++... .+. . ......
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 9987654 22 2232 2334578899999 66555 556678899999988 453322 221 1 125788
Q ss_pred EEEcCCCCEEEEEE--CCeEEEEEcCCC-ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 197 IAFHASGELLAVAS--GHKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 197 VafSPdG~~LAsgS--dd~I~VWDl~t~-~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
|.++|||++|+++. .+.|.+|+++.. ..+.............+.+.|+|+|++|+++..
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 99999999999988 345999999433 222212222223456899999999998888764
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.50 E-value=3.1e-06 Score=88.71 Aligned_cols=163 Identities=12% Similarity=0.160 Sum_probs=118.8
Q ss_pred EEEEEeCCCeEEEEeCCCC----CCC---CCCC---CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCC
Q 004785 83 GLASWVEAESLHHLRPKYC----PLS---PPPR---STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRR 150 (730)
Q Consensus 83 ~L~Sgs~DgsIrlWd~~t~----~L~---gH~~---~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~~ 150 (730)
.+...-..|.|.++..... .|. ...- .-.++.|++.+..++++-.+|.+.+-+....... +.++.|.-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 4555566777777765432 121 1111 2457889999999999988999986665555433 47899999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEE--ecCCCCeEEEEEcC-CCCEEEEEE-CCeEEEEEcCCCccc
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS--RDFYRPIASIAFHA-SGELLAVAS-GHKLYIWRYNMREET 225 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~--l~h~~~V~sVafSP-dG~~LAsgS-dd~I~VWDl~t~~~~ 225 (730)
..+...|+-.+.+++++|+.|+.+..||++. ++.+.. ..|...|.+|.-+| ++.++++|+ |+.|++||.++-.+
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k- 245 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK- 245 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-
Confidence 9999999988889999999999999999993 344433 34788899998876 577999999 55599999985543
Q ss_pred cCCeEEecCCCCeEEEEEccCCC
Q 004785 226 SSPRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPdG~ 248 (730)
+.....-.+.|+.+.++|.-.
T Consensus 246 --Pl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 246 --PLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred --ccccCccccceEEEEecchhh
Confidence 222333457899999998644
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.49 E-value=1.6e-06 Score=90.77 Aligned_cols=148 Identities=15% Similarity=0.066 Sum_probs=117.3
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC-CCeEEEE-Eec
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLKV-LHG 147 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~-tg~~l~~-l~g 147 (730)
.+..+..+++...+|.+.+-+.... ..++|.-...-+.|+. +.+++++|++|+.+.-||++ .++.+.. .+.
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 4456777888888888875554432 5778999999999997 56789999999999999998 3444433 577
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CCeEEEEecCCCCeEEEEEcCCC--CEEEEEECCeEEEEEcCCCcc
Q 004785 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRDFYRPIASIAFHASG--ELLAVASGHKLYIWRYNMREE 224 (730)
Q Consensus 148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~i~~l~h~~~V~sVafSPdG--~~LAsgSdd~I~VWDl~t~~~ 224 (730)
|...|.+|.-+|..+.++++|+.|..|++||.+ .++++......+.|..+.++|.- ++|+++-.++.+|-+......
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 889999999998788999999999999999999 57888877788999999999954 345555566677777765543
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=2.5e-06 Score=92.14 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=106.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCcEE
Q 004785 81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWV 154 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~~~V~s 154 (730)
...++++..-+.+++||...++ +.--..+|+++...|+|++|++|..-+.+..+|++.++.+.. +++..+.|.+
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 6789999999999999998762 334466799999999999999999999999999999998876 8999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCC
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG 203 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG 203 (730)
|..+| ...++++++.|..|||+|+.+.+.+...-....++++-+.++-
T Consensus 296 ih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 296 IHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred EEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 99999 8899999999999999999998877766666777788776653
No 252
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.38 E-value=2e-06 Score=93.27 Aligned_cols=133 Identities=19% Similarity=0.309 Sum_probs=96.2
Q ss_pred CCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCCCCE
Q 004785 89 EAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTI 164 (730)
Q Consensus 89 ~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~dg~l 164 (730)
+...+.+|....+ .+.||-..+++++|+||+++|+++..|..|+|-....-..+..| -||+..|..++.-+ +..
T Consensus 130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~ 207 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYL 207 (390)
T ss_pred CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cce
Confidence 3445666665523 47799999999999999999999999999999887665555554 58999999999976 566
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCCC---CeE----------EEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785 165 IASGSLDHEVRLWNASTAECIGSRDFYR---PIA----------SIAFHASGELLAVASGHK-LYIWRYNMRE 223 (730)
Q Consensus 165 LaSgS~DgtVrLWDl~tg~~i~~l~h~~---~V~----------sVafSPdG~~LAsgSdd~-I~VWDl~t~~ 223 (730)
|+|++.|++|++||+.+|+++..+.... .|. .++|....+.++..+++. |+++......
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~ 280 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALP 280 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCC
Confidence 9999999999999999999886654221 111 122322334444455555 6666665544
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=9.8e-06 Score=91.02 Aligned_cols=148 Identities=17% Similarity=0.300 Sum_probs=105.8
Q ss_pred eCCCeEEEEeCC--CCCCC-CCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCC
Q 004785 88 VEAESLHHLRPK--YCPLS-PPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162 (730)
Q Consensus 88 s~DgsIrlWd~~--t~~L~-gH~~~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg 162 (730)
-...++++++.+ .+.+. ...++|+++.|+++|+-++++-. --+|.|+|++ ++.+..| -.++-+++-|+| .+
T Consensus 248 YGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g 323 (566)
T KOG2315|consen 248 YGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HG 323 (566)
T ss_pred cccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CC
Confidence 345567777776 22222 34789999999999988776644 5689999975 5555555 456678899999 88
Q ss_pred CEEEEEeC---CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEEe
Q 004785 163 TIIASGSL---DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVL 232 (730)
Q Consensus 163 ~lLaSgS~---DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-------dd~I~VWDl~t~~~~~~~~~l~ 232 (730)
++++.++. -|.|-|||+.+.+++..+..... +-..|+|||+++++++ |++++||++...... .
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~------~ 396 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH------E 396 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee------h
Confidence 98888765 47899999999888777664443 4578999999999887 566999998654321 1
Q ss_pred cC-CCCeEEEEEccC
Q 004785 233 RT-RRSLRAVHFHPH 246 (730)
Q Consensus 233 ~h-~~~V~sVaFSPd 246 (730)
.+ ......+.|-|-
T Consensus 397 ~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 397 KMFKSELLQVEWRPF 411 (566)
T ss_pred hhhhHhHhheeeeec
Confidence 11 114666777653
No 254
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.9e-05 Score=92.44 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=109.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--C--eEEEEEecC
Q 004785 81 RRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--G--SCLKVLHGH 148 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t--g--~~l~~l~gH 148 (730)
+..+.....+..+.+|...+. .-..|.-.++|.++||+++++|++..||.|.+|.--. + .....+.=|
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 344444455667778877652 1345777799999999999999999999999996322 2 223556668
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR 222 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~ 222 (730)
...|.+++|++ ++.+++||+..+.+-+|.+.+++....-.....|..+.++||+.+.++.. |+.|.+....+.
T Consensus 251 ~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 251 HDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ccccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 88999999999 99999999999999999999998444445778999999999999776665 666888776443
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.34 E-value=4.1e-05 Score=84.57 Aligned_cols=168 Identities=13% Similarity=0.064 Sum_probs=127.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~~~V~sVa 156 (730)
.|..++..+ .|+.-+.+...+ .-.+|.+.|.-..+.-++.-++.|..|| .+-|+|..+++ ++.+...-+.|.++.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEE
Confidence 444554444 444444444333 2347888899999999999999999999 89999998887 556666778899999
Q ss_pred EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-----CeEEEEEcCCCccccCCeE
Q 004785 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-----HKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-----d~I~VWDl~t~~~~~~~~~ 230 (730)
.++ +++.++.+.....|.+.|+.+|.....-. ..+-|....|||+++++|.+-- ..|+++|+..++...
T Consensus 409 vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~---- 483 (668)
T COG4946 409 VSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD---- 483 (668)
T ss_pred EcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----
Confidence 999 99999999988999999999998765533 5567999999999999999862 239999999887533
Q ss_pred EecCCCCeEEEEEccCCCeEEEEE
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.......-.+-+|.|||++|..-+
T Consensus 484 vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 484 VTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecCCcccccCcccCCCCcEEEEEe
Confidence 222333445678999999876544
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=0.0013 Score=71.13 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=104.9
Q ss_pred EEEEECCCCCEEEEEeC-CCeEEEEECCC-CeEEE--EEecCCCC----------cEEEEEccCCCCEEEEEeC-CCcEE
Q 004785 111 IAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCLK--VLHGHRRT----------PWVVRFHPLNPTIIASGSL-DHEVR 175 (730)
Q Consensus 111 t~lafSPDG~~LaSgS~-DgtVrVWDl~t-g~~l~--~l~gH~~~----------V~sVafSP~dg~lLaSgS~-DgtVr 175 (730)
+-++++++|++|+++.. -+.|.++-++. |.... .+..|.+. +....|.| +++++++... --.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence 78999999999999977 58999999855 54322 22345555 88899999 8888887653 23599
Q ss_pred EEECCCCeEEEE----ecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC-ccccCCeEE------ecCCCCeEEEE
Q 004785 176 LWNASTAECIGS----RDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR-EETSSPRIV------LRTRRSLRAVH 242 (730)
Q Consensus 176 LWDl~tg~~i~~----l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~-~~~~~~~~l------~~h~~~V~sVa 242 (730)
+|++..|+.... +.....-..|.|+|+|++.++.+ +.+|-+|.++.. ........+ .....+...|.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 999998876443 33456778999999999999888 677999999874 211111111 12355778999
Q ss_pred EccCCCeEEEEEe
Q 004785 243 FHPHAAPLLLTAE 255 (730)
Q Consensus 243 FSPdG~~Llatgs 255 (730)
.++||++|.++-.
T Consensus 251 is~dGrFLYasNR 263 (346)
T COG2706 251 ISPDGRFLYASNR 263 (346)
T ss_pred ECCCCCEEEEecC
Confidence 9999998887654
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=3.1e-05 Score=85.56 Aligned_cols=130 Identities=18% Similarity=0.141 Sum_probs=110.1
Q ss_pred CCCEEEEEeCCC-eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAE-SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~Dg-sIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
....++.|..|+ .+.++|..++. +.+.-+.|.++..++||++++.+-+...+.+.|+.+|+....=+...+-|+..
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf 449 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF 449 (668)
T ss_pred CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence 444788888888 89999999874 66778899999999999999999888999999999998665556667889999
Q ss_pred EEccCCCCEEEEEeCCC----cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785 156 RFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 156 afSP~dg~lLaSgS~Dg----tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS 210 (730)
.||| ++++++.+--+| .|+++|+.+++..........-.+-+|+|||++|..-+
T Consensus 450 ~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 450 DWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9999 999999876554 58999999998887766666667889999999998876
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=2.4e-05 Score=88.45 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=120.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
+...++-|...|.|.+|+...+.+ ..|.+.|.++.++.+-..|.+++.|..+..|+...+..++.+++....+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 456777888899999999877632 47999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCC-----CCEEEEEECC--eEEEEEcCCC
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHAS-----GELLAVASGH--KLYIWRYNMR 222 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPd-----G~~LAsgSdd--~I~VWDl~t~ 222 (730)
++..+| ++.++++++. +|++||+.+++.+..|. |.+.|+++.|--+ |.++.++... .+.+|-++..
T Consensus 149 sl~is~-D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 149 SLCISP-DGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred eEEEcC-CCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 999999 7999988874 69999999999988875 8899999999877 7777766532 3888877653
No 259
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.20 E-value=6.4e-05 Score=78.26 Aligned_cols=175 Identities=9% Similarity=0.002 Sum_probs=120.5
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEE--EecCCCC
Q 004785 79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKV--LHGHRRT 151 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~--Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g~~l~~--l~gH~~~ 151 (730)
+..-.+..++.|.++++.++..+ +..-|... +..+.+++|++++++.++...|..|.+.. ++.+.. .+.-++.
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 34556677788888888887755 33345444 88999999999999999999999998865 333332 2334445
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEE-----ecCCCCeEEEEEcCCCC--EEEEEE-CCeEEEEEcCCC
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-----RDFYRPIASIAFHASGE--LLAVAS-GHKLYIWRYNMR 222 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~-----l~h~~~V~sVafSPdG~--~LAsgS-dd~I~VWDl~t~ 222 (730)
-.+..|+. ....+|++..||++.|||++... +... -.|++.+..+.|++.|. +|+..- -..++|.|+++.
T Consensus 206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 57889998 88999999999999999998643 2221 13789999999999775 444433 344999999988
Q ss_pred ccccCC----eEEecCC-CCeEEEEEccCCCeEEEEE
Q 004785 223 EETSSP----RIVLRTR-RSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 223 ~~~~~~----~~l~~h~-~~V~sVaFSPdG~~Llatg 254 (730)
...+.. .....|. ..|..-.|+.++..+.+..
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCccccccc
Confidence 653311 1111222 2366666776665444433
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.18 E-value=0.0014 Score=72.47 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=121.2
Q ss_pred CeEEEEeCCCCCCCC----CCCCeEEEEECCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC-------C
Q 004785 91 ESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH-------R 149 (730)
Q Consensus 91 gsIrlWd~~t~~L~g----H~~~Vt~lafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH-------~ 149 (730)
++|.+.|..+.++.+ -.. -..+ +||||+.|+.+.. +..|.+||+.+++.+..+.-- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 567777766653221 111 1224 9999999988765 689999999999999888632 2
Q ss_pred CCcEEEEEccCCCCEEEEEe-C-CCcEEEEECCCCeEEEEecCCCC--------------------------------eE
Q 004785 150 RTPWVVRFHPLNPTIIASGS-L-DHEVRLWNASTAECIGSRDFYRP--------------------------------IA 195 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS-~-DgtVrLWDl~tg~~i~~l~h~~~--------------------------------V~ 195 (730)
.....++++| ++++++... . +..|-+.|+.+++.+..+.-.+. ..
T Consensus 105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 2334789999 887777655 3 78999999998877554321110 01
Q ss_pred EE--------------EEcC-CCCEEEEEECCeEEEEEcCCCccccC-CeEEe--------cCCCCeEEEEEccCCCeEE
Q 004785 196 SI--------------AFHA-SGELLAVASGHKLYIWRYNMREETSS-PRIVL--------RTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 196 sV--------------afSP-dG~~LAsgSdd~I~VWDl~t~~~~~~-~~~l~--------~h~~~V~sVaFSPdG~~Ll 251 (730)
.. .|.+ +|+++++...+.|++.|+........ ...+. -....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 11 1223 67777777777788887544321110 00000 0122334488888888776
Q ss_pred EEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCC-EEEE
Q 004785 252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISL 320 (730)
Q Consensus 252 atgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~-rI~~ 320 (730)
....-.. .|-.+.+...+.+.|..+.+...... ...+.+...|++|++ ++++
T Consensus 264 V~~~~~~-------------~~thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyv 316 (352)
T TIGR02658 264 LLADQRA-------------KWTHKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYA 316 (352)
T ss_pred EEecCCc-------------cccccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEE
Confidence 6432000 00011133355555554444332221 123567899999999 7665
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=7.1e-06 Score=91.45 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=112.6
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Q 004785 74 FEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142 (730)
Q Consensus 74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l 142 (730)
..++.++...+++.++|++|++|.++.. ++..|+.+|.++.|-.|-+.++++ |+-|.+||.--|+.+
T Consensus 740 ai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 740 AIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLL 817 (1034)
T ss_pred HHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchh
Confidence 3445678889999999999999998642 467899999999999988888765 889999998777766
Q ss_pred EEEe--cCCCCcEEEEEccC-CCCEEE-EEeCCCcEEEEECCCCeEEEEec------CCCCeEEEEEcCCCCEEEEEE-C
Q 004785 143 KVLH--GHRRTPWVVRFHPL-NPTIIA-SGSLDHEVRLWNASTAECIGSRD------FYRPIASIAFHASGELLAVAS-G 211 (730)
Q Consensus 143 ~~l~--gH~~~V~sVafSP~-dg~lLa-SgS~DgtVrLWDl~tg~~i~~l~------h~~~V~sVafSPdG~~LAsgS-d 211 (730)
..+. ...+.+..+..-+. +..++. -++...+|+++|.+.++.+..+. .+.-+.+++.-+.|++|+.+- +
T Consensus 818 aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 818 AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC
Confidence 5332 11233444444442 233443 44788999999999887655432 335688999999999999885 5
Q ss_pred CeEEEEEcCCCcccc
Q 004785 212 HKLYIWRYNMREETS 226 (730)
Q Consensus 212 d~I~VWDl~t~~~~~ 226 (730)
+.|.+.|.++++.+.
T Consensus 898 Gci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 898 GCIAILDARNGKVIN 912 (1034)
T ss_pred CcEEEEecCCCceec
Confidence 569999999998654
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=6.7e-06 Score=60.53 Aligned_cols=39 Identities=31% Similarity=0.775 Sum_probs=36.9
Q ss_pred CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (730)
Q Consensus 139 g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (730)
|+++..+++|.+.|++|+|+| ++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999998
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=1.4e-05 Score=88.44 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=135.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC-CeE--EEEEecC
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT-GSC--LKVLHGH 148 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t-g~~--l~~l~gH 148 (730)
..+..|++++.|..|.+||-..+. ..+|...|....|-| +.+.|++++.||.|++=.+.. +.+ .+.+..|
T Consensus 152 ~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h 231 (559)
T KOG1334|consen 152 QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH 231 (559)
T ss_pred ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc
Confidence 478899999999999999966552 358999999999998 567899999999999977643 322 3556679
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCC---CeEEEEEcCCCC-EEEEEECCe-EEEEEc
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYR---PIASIAFHASGE-LLAVASGHK-LYIWRY 219 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~---~V~sVafSPdG~-~LAsgSdd~-I~VWDl 219 (730)
.+.|..++.-|....-|.+++.|+.+.-+|++.+.....+ .+.. ..+.++.+|... .+++++.+. +++||.
T Consensus 232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~ 311 (559)
T KOG1334|consen 232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ 311 (559)
T ss_pred cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence 9999999999988899999999999999999987654332 2223 567899999776 778887655 999998
Q ss_pred CCCccccC---------CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 220 NMREETSS---------PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 220 ~t~~~~~~---------~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+.-..... ........-.|++++|+.++.-++++.+
T Consensus 312 R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 312 RRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred cchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 76543210 0111122457899999988887887766
No 264
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=2.8e-05 Score=86.20 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=117.5
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEEC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl 179 (730)
+|.+|.+.|..+.|+..|..|++|++|..|.+||-..++....| .+|...|....|-|.. ..-+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 58899999999999999999999999999999999998877666 5899889888888743 356888999999998876
Q ss_pred CCC-eEE---EEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCccccCCeEEecCCC---CeEEEEEccCCCeE
Q 004785 180 STA-ECI---GSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPHAAPL 250 (730)
Q Consensus 180 ~tg-~~i---~~l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~---~V~sVaFSPdG~~L 250 (730)
... .+. ....|.+.|.-++..|+.. -|.+++ |+.+.-+|++.............+.. ..+.++..|...+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 543 332 2235899999999999876 444555 44488899988764332222222333 56789999988877
Q ss_pred EEEEe
Q 004785 251 LLTAE 255 (730)
Q Consensus 251 latgs 255 (730)
++++.
T Consensus 297 faVgG 301 (559)
T KOG1334|consen 297 FAVGG 301 (559)
T ss_pred cccCC
Confidence 77665
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.07 E-value=0.00019 Score=76.98 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecC-----CCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH-----~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
.|+.-|+++.++.|+..++++ +|-.|.+|+++--. .+..++.+ +.-|++..|||..-+.++..+..|+|+|
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 678889999999999998887 67899999986432 22333433 3458889999988889999999999999
Q ss_pred EECCCCeEE----EEec-------------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecC-----
Q 004785 177 WNASTAECI----GSRD-------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT----- 234 (730)
Q Consensus 177 WDl~tg~~i----~~l~-------------h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h----- 234 (730)
.|++..... +.+. --..|..+.|+++|+++++-.--+|+|||++..... .....-|
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~p--v~t~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKP--VETYPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCc--ceEEeehHhHHH
Confidence 999853221 1111 113678899999999999888788999999765431 1122222
Q ss_pred -------CCC---eEEEEEccCCCeEEEEE
Q 004785 235 -------RRS---LRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 235 -------~~~---V~sVaFSPdG~~Llatg 254 (730)
.+. -..++|+.++.++++++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 122 24688999998665544
No 266
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=5.3e-06 Score=96.60 Aligned_cols=178 Identities=14% Similarity=0.141 Sum_probs=125.6
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCC-C-eEEEEECCC-CeEEEEE
Q 004785 73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGD-H-TVKIIDCQT-GSCLKVL 145 (730)
Q Consensus 73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~D-g-tVrVWDl~t-g~~l~~l 145 (730)
...+.+.+...|+.|.-.|.|+++++.++. ..+|...|+-+.-+.||..+++.+.- . ...+|++.+ +.....|
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc
Confidence 334445578899999999999999999883 67899999999999999987766543 2 578999854 4555555
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (730)
Q Consensus 146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-----~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~ 220 (730)
.+ -.++.|+. ....-+.|..-....|||+.++..+.++ .....-+.+.|+|+.+++.--+ .+||++
T Consensus 1185 ~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWDvR 1255 (1516)
T KOG1832|consen 1185 DE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWDVR 1255 (1516)
T ss_pred cc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc----eeeeec
Confidence 43 34688987 4444444444456899999998776552 2233447889999988765322 579999
Q ss_pred CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCC
Q 004785 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE 263 (730)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~ 263 (730)
..+.+.. +..-...+ .=.|+|+|..++..+++||+++..
T Consensus 1256 ~~~aIh~---FD~ft~~~-~G~FHP~g~eVIINSEIwD~RTF~ 1294 (1516)
T KOG1832|consen 1256 IPEAIHR---FDQFTDYG-GGGFHPSGNEVIINSEIWDMRTFK 1294 (1516)
T ss_pred cHHHHhh---hhhheecc-cccccCCCceEEeechhhhhHHHH
Confidence 8865442 21111111 225999999999999999998543
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.01 E-value=0.0005 Score=86.01 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=104.6
Q ss_pred EEEEeCCCeEEEEeCCCCC---CCC--C---------------CCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE
Q 004785 84 LASWVEAESLHHLRPKYCP---LSP--P---------------PRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL 142 (730)
Q Consensus 84 L~Sgs~DgsIrlWd~~t~~---L~g--H---------------~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l 142 (730)
.++-...+.|+.+|..++. +.+ . -..-..++|+| ++.++++.+.++.|++||..++...
T Consensus 639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 3444455778888876542 111 0 11346899999 5666677777899999999877543
Q ss_pred EEEecC---------------CCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCeEEEEe-------------c-C--
Q 004785 143 KVLHGH---------------RRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSR-------------D-F-- 190 (730)
Q Consensus 143 ~~l~gH---------------~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~~l-------------~-h-- 190 (730)
.+.+. -.....|+|+| +++ ++++-+.++.|++||+.++...... + .
T Consensus 719 -~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 719 -VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred -EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 23211 12356799999 555 6777777899999999876532211 0 0
Q ss_pred ------CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe----------EEecCCCCeEEEEEccCCCeEEE
Q 004785 191 ------YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR----------IVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 191 ------~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~----------~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
-.....++|+++|+++++-+ +++|++||..++....... .....-.....++++++|+.+++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 01235899999998655555 4569999998765421000 00111235678999999985544
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.01 E-value=3.8e-05 Score=83.53 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=76.7
Q ss_pred EEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEcC
Q 004785 124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHA 201 (730)
Q Consensus 124 SgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafSP 201 (730)
.+++...+.+|....+. ...+-||-..++.|+|+| |+++++++..|..|++-.+..--.+.. ++|+.-|..++.-+
T Consensus 127 kagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred ecCCceeeeeecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence 33455666677666554 344568999999999999 889999999999999987765554544 57899999999886
Q ss_pred CCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 202 SGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 202 dG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
+.. |++++ |++|++||+.+++.+.
T Consensus 205 ~~~-LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 205 NYL-LLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred Cce-eeecCCCCcEEEEecccCCccc
Confidence 554 56665 5669999999998753
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.01 E-value=0.00032 Score=87.70 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC------------CCC------CCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCe
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPL------------SPP------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGS 140 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L------------~gH------~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~ 140 (730)
++...++...++.|++||..++.+ .++ -.....++|+|||+.|+ +-+.++.|++||+.++.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 455666777788899999865421 111 12356799999998555 44567899999998765
Q ss_pred EEEEEec---------------------CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC--------
Q 004785 141 CLKVLHG---------------------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-------- 191 (730)
Q Consensus 141 ~l~~l~g---------------------H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~-------- 191 (730)
......+ .-.....++|++ +++++++-..++.|++||..++......+..
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 3211100 011346899999 8889999899999999999888765443211
Q ss_pred ------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785 192 ------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREE 224 (730)
Q Consensus 192 ------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~ 224 (730)
.....++++++|+++++-+ ++.|++||+.+++.
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 2467899999998666555 45599999988764
No 270
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00022 Score=80.64 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=99.2
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc--EEE
Q 004785 103 LSPPPRSTIAAAFSPDGKTLASTHG---D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE--VRL 176 (730)
Q Consensus 103 L~gH~~~Vt~lafSPDG~~LaSgS~---D-gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt--VrL 176 (730)
+..-...+..-+|+|+++.++..+. . ..+.++|+.+++....+. -.+.-...+|+|++.+++++...|+. |++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 3344556778899999998776633 3 469999999887544443 22333457999966666677777775 667
Q ss_pred EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~----I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
.|+.++...+.....+.-..-.|+|||+.|+..+|.. |+++|.+.....+ +......-..-.|+|||++++.
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eeccCCCCcCccCCCCCCEEEE
Confidence 7888777555333344444778999999999988533 8888887766422 2222222227789999999888
Q ss_pred EE
Q 004785 253 TA 254 (730)
Q Consensus 253 tg 254 (730)
..
T Consensus 343 ~~ 344 (425)
T COG0823 343 ES 344 (425)
T ss_pred Ee
Confidence 76
No 271
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.99 E-value=0.0012 Score=68.44 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----CCCCc
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTP 152 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~g-H~~~Vt~lafS-PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-----H~~~V 152 (730)
.+..+++-...+.|..|+..++...- .......+++. +++ .|+.+..+ .+.++|..+++....+.. .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 55566666678888888887764221 11127788888 565 45555554 455559999865544432 23457
Q ss_pred EEEEEccCCCCEEEEEeCC--------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004785 153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR 222 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~D--------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~ 222 (730)
+.+++.| ++++.++.... +.|..++.. ++.......-...+.++|+||++.|++.. .+.|+.+++...
T Consensus 89 ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 89 NDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 7899999 88888886543 568888887 66655555556678999999999888776 345999998644
Q ss_pred cc-ccCCeEEecC-C--CCeEEEEEccCCCeEEE
Q 004785 223 EE-TSSPRIVLRT-R--RSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 223 ~~-~~~~~~l~~h-~--~~V~sVaFSPdG~~Lla 252 (730)
.. ......+... . ...-.+++..+|+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 32 2212222221 2 23778999999985554
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.00032 Score=79.18 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=94.6
Q ss_pred EEEEECCCCC-EEEEEeC--C---------CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEE--EeCCCcEEE
Q 004785 111 IAAAFSPDGK-TLASTHG--D---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS--GSLDHEVRL 176 (730)
Q Consensus 111 t~lafSPDG~-~LaSgS~--D---------gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaS--gS~DgtVrL 176 (730)
..+.|++-|. +|+.++. | .++++.+++..++...+. -.++|.++.|+| ++.-|+. |-.-..+.|
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTI 298 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEE
Confidence 4688888665 3333322 3 468888887444444443 468999999999 6655444 445678999
Q ss_pred EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-C---CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-d---d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
+|++ +..+..+. .++-+.+-|+|.|++|+.++ + |.+-|||+.+.+.+. .. .-..-+-+.|+|||.++++
T Consensus 299 fnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~---~~--~a~~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 299 FNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA---KF--KAANTTVFEWSPDGEYFLT 371 (566)
T ss_pred EcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc---cc--ccCCceEEEEcCCCcEEEE
Confidence 9986 56666655 45567889999999998888 2 449999999866543 11 1234467899999999887
Q ss_pred EEe
Q 004785 253 TAE 255 (730)
Q Consensus 253 tgs 255 (730)
+.-
T Consensus 372 ATT 374 (566)
T KOG2315|consen 372 ATT 374 (566)
T ss_pred Eec
Confidence 653
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.84 E-value=0.0071 Score=66.86 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=73.7
Q ss_pred CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-Ee---------CCCcEEEEECCCCeEEEEecCCC------
Q 004785 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GS---------LDHEVRLWNASTAECIGSRDFYR------ 192 (730)
Q Consensus 129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaS-gS---------~DgtVrLWDl~tg~~i~~l~h~~------ 192 (730)
++|.+.|..+++.+..+..-..+- .+ ++| +++.++. .+ .+..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 799999999999998887544333 35 999 5555544 55 58899999999999998876433
Q ss_pred --CeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCcccc
Q 004785 193 --PIASIAFHASGELLAVAS---GHKLYIWRYNMREETS 226 (730)
Q Consensus 193 --~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~ 226 (730)
....++++|||++|++.. +..|.+.|+.+++.+.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 234789999999999887 3449999999987644
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.81 E-value=0.00021 Score=76.62 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=76.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-Ce----EEEEEecCC------------CCcEEEEEccC-CCCEEEEE
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GS----CLKVLHGHR------------RTPWVVRFHPL-NPTIIASG 168 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g~----~l~~l~gH~------------~~V~sVafSP~-dg~lLaSg 168 (730)
..-|.++.|..+|.+||+|..+|.|-++.-.. .+ ....++.|. ..|..+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 44689999999999999999999999986433 21 233444443 45788999873 23467777
Q ss_pred eCCCcEEEEECCCCeEE-----------------------------------EEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 004785 169 SLDHEVRLWNASTAECI-----------------------------------GSR--DFYRPIASIAFHASGELLAVASG 211 (730)
Q Consensus 169 S~DgtVrLWDl~tg~~i-----------------------------------~~l--~h~~~V~sVafSPdG~~LAsgSd 211 (730)
..|.+|++|-+...... +.+ .|..-|+++++..|++.+.++.|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 89999999987642211 111 14445677777777776666655
Q ss_pred CeEEEEEcC
Q 004785 212 HKLYIWRYN 220 (730)
Q Consensus 212 d~I~VWDl~ 220 (730)
=+|.+|.+.
T Consensus 185 LRINLWnle 193 (433)
T KOG1354|consen 185 LRINLWNLE 193 (433)
T ss_pred eeeeecccc
Confidence 556666654
No 275
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.81 E-value=2.8e-05 Score=57.17 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.9
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD 135 (730)
.+.+|...|++++|+|++.+|++++.|++|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3568999999999999999999999999999997
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00012 Score=82.35 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=103.0
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-----------CCcEEEEE
Q 004785 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----------DHEVRLWN 178 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~-----------DgtVrLWD 178 (730)
-+-+.|||.|.+|++-...| |.+|--.+...++.|. |.+ |.-+.||| ..++|+|=+. ...++|||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence 46799999999999998765 8899877766677774 665 88999999 9999998432 25699999
Q ss_pred CCCCeEEEEecC---CCCe-EEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 179 ASTAECIGSRDF---YRPI-ASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 179 l~tg~~i~~l~h---~~~V-~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
+.+|...+.+.. ...+ .-..||.|++++|--..++|.||+...-..+.. ..-.-..|....|+|.+..|+-
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~---Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDK---KSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecc---cccCCccccCcccCCCcceEEE
Confidence 999998877653 2222 235799999999999999999999876443321 1112357888999999885553
No 277
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=2.2e-05 Score=91.60 Aligned_cols=236 Identities=15% Similarity=0.134 Sum_probs=153.1
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCC-cEEEEEC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDH-EVRLWNA 179 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~Dg-tVrLWDl 179 (730)
.+..|....+|++|+-+.++|+.|+-.|.|+++++.+|.....+.+|...|+.+.=+- ++..+++.+ ... -..+|++
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence 3667889999999999999999999999999999999999999999999999999888 666555543 333 5779998
Q ss_pred CC-CeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC-eEEecCCCCeEEEEEccCCCeEEEEEee
Q 004785 180 ST-AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (730)
Q Consensus 180 ~t-g~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~-~~l~~h~~~V~sVaFSPdG~~Llatgsv 256 (730)
.. +...+.+. .-.++.|+..-+.-+.|+ .+...|||+.++...... .-.......-+...|+|+.+.++--|-.
T Consensus 1175 ~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred ccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence 75 33344333 345678887666556666 455999999998765421 1111223334778999999988877889
Q ss_pred CCccCCCcceeEeccC--CcccCCC--CeEE----EecCCCCCCCCcccccCCCCCCce---eeeEecCCCEEEEEecCC
Q 004785 257 NDLDSSESSLTLATSP--GYWRYPP--PVIC----MAGAHSSSHPGLAEEVPLITPPFL---RPSFVRDDERISLQHTEH 325 (730)
Q Consensus 257 wdl~s~~~~~~l~t~s--G~~~~p~--~~V~----l~d~~s~d~~~L~~~~~~~slpil---~p~FSpDg~rI~~~~~~~ 325 (730)
||++.......+-.++ +...|.+ ..|. +||..+-... .+.|-+ .+.|..-|..++..-+..
T Consensus 1252 WDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lL--------h~VP~Ldqc~VtFNstG~VmYa~~~~~ 1323 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLL--------HSVPSLDQCAVTFNSTGDVMYAMLNIE 1323 (1516)
T ss_pred eeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHH--------hcCccccceEEEeccCccchhhhhhhh
Confidence 9999765544332222 1112222 1222 2333222111 233333 578888888888755554
Q ss_pred CCCcccceeecCCCcceeeecccC
Q 004785 326 DSGATRTQQSLRSSSSVRLLTYST 349 (730)
Q Consensus 326 dsgs~~~~~~~~ss~~~~l~~~~~ 349 (730)
|.=+.+..-+....-...+..+++
T Consensus 1324 d~~sdvh~~r~k~p~fSSFRTf~a 1347 (1516)
T KOG1832|consen 1324 DVMSDVHTRRVKHPLFSSFRTFDA 1347 (1516)
T ss_pred hhhhhhcccccccchhhhhccccc
Confidence 444444444444444433444433
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00055 Score=80.12 Aligned_cols=162 Identities=16% Similarity=0.122 Sum_probs=115.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVaf 157 (730)
.+..++-|..+|.|++.+.... +...|... ..+|.++++||.||+|.|-.+-+.+...++.- ..++.+|++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial 120 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIAL 120 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEe
Confidence 6788889999999999987543 22233332 55899999999999999999988887776653 357999999
Q ss_pred ccC----CCCEEEEEeCCCcEEEEECCC---CeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCC--
Q 004785 158 HPL----NPTIIASGSLDHEVRLWNAST---AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSP-- 228 (730)
Q Consensus 158 SP~----dg~lLaSgS~DgtVrLWDl~t---g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~-- 228 (730)
+|+ ..+.+++|+.-| +.++.-+- ...+..-...++|.++.|. |+++|-++|.+|+|||+.++..+...
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence 993 257899999888 77765332 1222223467899999996 89999999999999999888654311
Q ss_pred -eEEecCCCCeEEEEEccCCCeEE
Q 004785 229 -RIVLRTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 229 -~~l~~h~~~V~sVaFSPdG~~Ll 251 (730)
............+.|.++.+.++
T Consensus 198 p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred CCCCCCcccCCCceEecCCCeEEE
Confidence 11111122345788988877443
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=2.9e-05 Score=86.76 Aligned_cols=150 Identities=16% Similarity=0.206 Sum_probs=108.0
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc
Q 004785 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173 (730)
Q Consensus 101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-------g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt 173 (730)
+.+.||...|..++--.+.+-+++++.|++|++|.++. ..+..+++.|+.+|..+.|-. +.+.+++ .|+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCc
Confidence 35789999999888777788899999999999999854 236678899999999999987 6666655 5888
Q ss_pred EEEEECCCCeEEEEec---CCCCeEEEEEcC--CCCEEEEEE--CCeEEEEEcCCCccccCCeEE--ecCCCCeEEEEEc
Q 004785 174 VRLWNASTAECIGSRD---FYRPIASIAFHA--SGELLAVAS--GHKLYIWRYNMREETSSPRIV--LRTRRSLRAVHFH 244 (730)
Q Consensus 174 VrLWDl~tg~~i~~l~---h~~~V~sVafSP--dG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l--~~h~~~V~sVaFS 244 (730)
|.+||---++.+.... ..+.+..+.--+ +..+|..++ ..+|+++|.+..+...+.... .+....+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987777655321 222333333323 344555554 344999999988765433332 2345678999999
Q ss_pred cCCCeEEEE
Q 004785 245 PHAAPLLLT 253 (730)
Q Consensus 245 PdG~~Llat 253 (730)
+.|++++++
T Consensus 886 ~~GN~lAa~ 894 (1034)
T KOG4190|consen 886 DKGNKLAAA 894 (1034)
T ss_pred cCcchhhHH
Confidence 999988764
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.74 E-value=0.0035 Score=65.67 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=111.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECC---C-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSP---D-GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~--L~gH~~~Vt~lafSP---D-G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
.-..|+.|+..|...+|...+.. +.--......+.+.. | ...+..++.|.++++.+++.+.....+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 45678888888888999887542 111111122222211 1 23467788999999999876543322221112378
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEE---ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC-
Q 004785 154 VVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGS---RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS- 227 (730)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~---l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~- 227 (730)
++++++ ++.++++.+....|.+|.+... +.+.. ....+.-.+..|+.....+|+++. +.+.|||++.......
T Consensus 163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 899999 9999999999999999998753 22222 234455678899999999999995 5599999987543221
Q ss_pred -CeEEecCCCCeEEEEEccCCC
Q 004785 228 -PRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 228 -~~~l~~h~~~V~sVaFSPdG~ 248 (730)
......|.+.++.+.|++-|.
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred hcccCCCCCCceEEEEecCCCc
Confidence 112334789999999998765
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.73 E-value=0.00013 Score=75.76 Aligned_cols=73 Identities=27% Similarity=0.434 Sum_probs=63.9
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 109 STIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 109 ~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
.|++++-+|. ..+++.|+.||.+-+||.++.... ..++.|+..++.+-|||.++..|++++.||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4999999994 556778888999999999887543 456899999999999999999999999999999999874
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.0001 Score=79.02 Aligned_cols=141 Identities=9% Similarity=0.107 Sum_probs=102.7
Q ss_pred EEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-----eEEEEEecCCCCcEEEEE
Q 004785 85 ASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTPWVVRF 157 (730)
Q Consensus 85 ~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-----~~l~~l~gH~~~V~sVaf 157 (730)
++.+.+..|.+-+.+++ +--.-+..|.++.|.-.+.+++.|...|.|..+|++.+ .+...+. |...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 55666777888888776 22235677999999988999999999999999999764 3444443 8888998876
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCeE---EEEec-CCCCe--EEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004785 158 HPLNPTIIASGSLDHEVRLWNASTAEC---IGSRD-FYRPI--ASIAFHASGELLAVASGHK-LYIWRYNMREETS 226 (730)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~l~-h~~~V--~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~ 226 (730)
-..++..|++.+.+|+|++||++.-++ +..+. |-..- .-+-.++....++++++|- .+||.++.+....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 654678888889999999999997766 44432 32221 2223445555777777666 9999999887544
No 283
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.72 E-value=0.00046 Score=74.09 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=127.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-CC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCC
Q 004785 80 ARRGLASWVEAESLHHLRPKY-CP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----TGSCLKVLHGHR 149 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t-~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~----tg~~l~~l~gH~ 149 (730)
....+++.++|.++++|--.. ++ ...-+.+++++.+.++-..|+.|-+.|++.-+.+. ....++.+..|.
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh
Confidence 566799999999999997543 32 23456789999999999999999999999888653 344556777899
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-----------------------------e------------EEEE-
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----------------------------E------------CIGS- 187 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-----------------------------~------------~i~~- 187 (730)
..|..+-|+- ...++++.+.|..+.---.+.+ + .+..
T Consensus 115 ~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 115 ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence 9999999987 7778888777765432211111 1 0111
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 188 RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 188 l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.+|.+.+.+++|.+..+.|.+|..+ ++.+||+...+... ....+|...|..+..-+.-+.+++.++
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGE 260 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccC
Confidence 2477889999999999999999854 59999997766533 467788888888887777776666555
No 284
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.72 E-value=0.0021 Score=73.44 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=81.4
Q ss_pred CeEEEEECC-CCCEEEEE----eCCCe----EEEEECCCCeEE--EEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 109 STIAAAFSP-DGKTLAST----HGDHT----VKIIDCQTGSCL--KVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 109 ~Vt~lafSP-DG~~LaSg----S~Dgt----VrVWDl~tg~~l--~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
...++.||. +...+.+- +.++. -.+|++..++.. ... -.....|.+.+++| +.+.++.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 347888887 45555543 22443 355666554321 111 24667899999999 9999999999999999
Q ss_pred EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004785 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE 223 (730)
Q Consensus 177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~ 223 (730)
||...+..... ...-..+.++|||+|.++++|++ |.+.+||+....
T Consensus 286 yD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99987644333 44456788999999999999997 459999987654
No 285
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0011 Score=75.22 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=103.6
Q ss_pred eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE-eC--C-CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCE
Q 004785 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-SL--D-HEVRLWNASTAECIGSRDFYRPIASIAFHASGEL 205 (730)
Q Consensus 130 tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg-S~--D-gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~ 205 (730)
.+.+-|.. |.....+..-...+..-+|+| ++..++.. -. . ..+.++|+.+++........+.-....|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence 34444543 555555555556677789999 55443332 22 2 4599999999988888777777778899999999
Q ss_pred EEEEE--CCe--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCe
Q 004785 206 LAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPV 281 (730)
Q Consensus 206 LAsgS--dd~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~ 281 (730)
|+... ++. |+++|+..+.... +......-..=.|+|||++++.++.. .|+ +.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~ivf~Sdr---------------~G~-----p~ 307 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSKIVFTSDR---------------GGR-----PQ 307 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCEEEEEeCC---------------CCC-----cc
Confidence 88887 333 9999998876322 33333333367899999999988531 122 24
Q ss_pred EEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785 282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH 322 (730)
Q Consensus 282 V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~ 322 (730)
|++.+........+...... ...|.+||||++|++-.
T Consensus 308 I~~~~~~g~~~~riT~~~~~----~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 308 IYLYDLEGSQVTRLTFSGGG----NSNPVWSPDGDKIVFES 344 (425)
T ss_pred eEEECCCCCceeEeeccCCC----CcCccCCCCCCEEEEEe
Confidence 55544333333222221111 11788999999999944
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.66 E-value=0.0038 Score=77.15 Aligned_cols=140 Identities=15% Similarity=0.236 Sum_probs=95.0
Q ss_pred CCCeEEEEECCCCCEEEEEeC----C--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC---CCcEEEE
Q 004785 107 PRSTIAAAFSPDGKTLASTHG----D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLW 177 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~----D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~---DgtVrLW 177 (730)
...-..++|-.||.++|+.+- + +.+|||+-+ |....+-..-.+--.+++|.| .|+++++... ...|.+|
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEE
Confidence 335568999999999998875 2 579999954 764444333333345689999 9999998765 3456677
Q ss_pred ECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004785 178 NASTAECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (730)
Q Consensus 178 Dl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~ 249 (730)
.- +|-.-..|. ....|..+.|++|+..||+--.+.|.+|-..+..--.+..........+..+.|+|....
T Consensus 287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred ec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 64 343333322 345799999999999999988888999988776532211122233344556999996543
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.0089 Score=64.54 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=127.1
Q ss_pred CCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEE-----eCCCeEEEEeCCCC----
Q 004785 31 RNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASW-----VEAESLHHLRPKYC---- 101 (730)
Q Consensus 31 rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sg-----s~DgsIrlWd~~t~---- 101 (730)
|...|-.+|.....+.........-+.++++-. ++ .++..|++- ...|.|.+||...+
T Consensus 25 RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs-----------~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 25 RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FS-----------PDGRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--Ec-----------CCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 567777777775554433333333344443322 22 133333332 24678999998832
Q ss_pred -CCCCCCCCeEEEEECCCCCEEEEEeC------------------CCeEEEEECCCCeEEEE--E--ecCCCCcEEEEEc
Q 004785 102 -PLSPPPRSTIAAAFSPDGKTLASTHG------------------DHTVKIIDCQTGSCLKV--L--HGHRRTPWVVRFH 158 (730)
Q Consensus 102 -~L~gH~~~Vt~lafSPDG~~LaSgS~------------------DgtVrVWDl~tg~~l~~--l--~gH~~~V~sVafS 158 (730)
.+..|--.-..+.+.|||+.|+++-. +-++.+.|..+|+.+.+ + .-|.-+|..+++.
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence 45566666778999999988887732 23355567788888766 4 3477789999999
Q ss_pred cCCCCEEEEEeCCCc-------EEEEECCCCeEEEEe--------cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785 159 PLNPTIIASGSLDHE-------VRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM 221 (730)
Q Consensus 159 P~dg~lLaSgS~Dgt-------VrLWDl~tg~~i~~l--------~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t 221 (730)
+ ++..++..-..+. |-+++- ++.+..+ ...+.+-+|+++++|.++++.+ .+.+.+||..+
T Consensus 172 ~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 172 G-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred C-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 8 7766665443332 333333 3323222 2457899999999999999888 45699999999
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
+..+. ...-..+..|+-.+++ ++++++
T Consensus 249 g~~~~-----~~~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 249 GRLLG-----SVPLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CCEee-----ccccCceeeeeecCCc-eEEeCC
Confidence 87543 2223456777777777 454443
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.63 E-value=0.00052 Score=72.79 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=105.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCC-----CCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~-----~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
.|..-|.++.|+.|...++++ +|-.|.+|+++-.. .+..++.|. .-|++..|+|...+.+...+..|+|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 466678899999998888876 67889999986532 234445553 457889999978888999999999999
Q ss_pred EECCCCeEE----EEe-------c------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecC-----
Q 004785 177 WNASTAECI----GSR-------D------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT----- 234 (730)
Q Consensus 177 WDl~tg~~i----~~l-------~------h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h----- 234 (730)
-|++..... +.+ . -...|..+.|+++|+++++-+--+|+|||++..+... ..+.-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi--kTi~~h~~l~~ 326 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI--KTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc--eeechHHHHHH
Confidence 999843211 111 1 1246788999999999998888889999999876421 222112
Q ss_pred -------CCCe---EEEEEccCCCeEEEEEe
Q 004785 235 -------RRSL---RAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 235 -------~~~V---~sVaFSPdG~~Llatgs 255 (730)
...| ..+.||.|.+.+++++-
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCccccccccc
Confidence 1222 46789988887766543
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.62 E-value=0.018 Score=59.75 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC------C--CC-CCCCeEEEEECCCCCEEEEEeCC--------CeEEEEECCCCeEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYCP------L--SP-PPRSTIAAAFSPDGKTLASTHGD--------HTVKIIDCQTGSCLK 143 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~------L--~g-H~~~Vt~lafSPDG~~LaSgS~D--------gtVrVWDl~tg~~l~ 143 (730)
+..++.+..++ +.++|..+++ . .. .....+++++.++|++.++.... +.|..++.. ++...
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 35555555544 4555877652 1 12 34568899999999977776553 568888877 65444
Q ss_pred EEecCCCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCe--E--EEEe---cCC-CCeEEEEEcCCCCEEEEEE-CCe
Q 004785 144 VLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAE--C--IGSR---DFY-RPIASIAFHASGELLAVAS-GHK 213 (730)
Q Consensus 144 ~l~gH~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~--~--i~~l---~h~-~~V~sVafSPdG~~LAsgS-dd~ 213 (730)
... .-...+.|+|+| +++ ++++-+..+.|..+|+.... . ...+ ... +..-.++++.+|++.++.. .++
T Consensus 129 ~~~-~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 129 VAD-GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp EEE-EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred Eec-CcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 443 345678999999 665 55567788889999986322 1 1112 222 2478899999998666554 566
Q ss_pred EEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEE
Q 004785 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTA 254 (730)
Q Consensus 214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PdG~~Llatg 254 (730)
|.++|.+ ++... .+.-....+++++|. ++.+.|+.|.
T Consensus 207 I~~~~p~-G~~~~---~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 207 IVVFDPD-GKLLR---EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETT-SCEEE---EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEECCC-ccEEE---EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9999987 55433 222233589999994 6767676654
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.60 E-value=0.0022 Score=71.90 Aligned_cols=152 Identities=11% Similarity=0.131 Sum_probs=106.7
Q ss_pred CeEEEEeCCCC--CCC-CCCCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785 91 ESLHHLRPKYC--PLS-PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 91 gsIrlWd~~t~--~L~-gH~~~Vt~lafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL 165 (730)
..+.++++... +.. .-.+.|...+|+|+++.+++.+ .+-.+.++|++.. .... ...+.=+.+-|+| ..+++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~i 330 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYI 330 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEE
Confidence 44667766533 222 5588999999999988877766 4778999998765 3332 3344456689999 88888
Q ss_pred EEEeCC---CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEEecCC
Q 004785 166 ASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLRTR 235 (730)
Q Consensus 166 aSgS~D---gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-------dd~I~VWDl~t~~~~~~~~~l~~h~ 235 (730)
+.++.| |.|-+||....-.+...-......-+.|+|||+++.+.. |..|.|||+.....-
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------- 400 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------- 400 (561)
T ss_pred EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------
Confidence 887765 679999987654444222223345567999999888775 344999999766531
Q ss_pred CCeEEEEEccCCCeEEEEEeeC
Q 004785 236 RSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 236 ~~V~sVaFSPdG~~Llatgsvw 257 (730)
..+.+.|.|.|++..+++..|
T Consensus 401 -el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 -ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -hhhhccccCCcccceeeccCC
Confidence 456778999999777766666
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.58 E-value=0.016 Score=62.67 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=119.2
Q ss_pred CeEEEEECC-CCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCcE--EEEEccCCCCEEEEEeC-----CCcEEEEEC
Q 004785 109 STIAAAFSP-DGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSL-----DHEVRLWNA 179 (730)
Q Consensus 109 ~Vt~lafSP-DG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~~~V~--sVafSP~dg~lLaSgS~-----DgtVrLWDl 179 (730)
....++.+| ++..++.+-.-| ...+||..+++.+..+....+.-. ...|++ ++++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 455788899 566677776655 578899999998877754433322 378999 8888888644 477999999
Q ss_pred C-CCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC--------e-----------EEEEEcCCCccccCCeEE--ecCCC
Q 004785 180 S-TAECIGSRD-FYRPIASIAFHASGELLAVASGH--------K-----------LYIWRYNMREETSSPRIV--LRTRR 236 (730)
Q Consensus 180 ~-tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd--------~-----------I~VWDl~t~~~~~~~~~l--~~h~~ 236 (730)
. +-+.+..+. +.-.-..+.+.|||+.|+++.++ + +.+.|..+++.+. ...+ ..|..
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp~~~~~l 163 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELPPDLHQL 163 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecCcccccc
Confidence 9 445566655 44456678899999988887521 1 4445566666544 1223 33677
Q ss_pred CeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccC----CCCCCceeeeEe
Q 004785 237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP----LITPPFLRPSFV 312 (730)
Q Consensus 237 ~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~----~~slpil~p~FS 312 (730)
+|+.+++.++|. +..+.-|.-...+.. +.+.+...... ..+...+. ...--+-+++|+
T Consensus 164 SiRHLa~~~~G~--V~~a~Q~qg~~~~~~--------------PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 164 SIRHLAVDGDGT--VAFAMQYQGDPGDAP--------------PLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred ceeeEEecCCCc--EEEEEecCCCCCccC--------------CeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEe
Confidence 899999999997 333334433322222 23333321111 11111111 111223379999
Q ss_pred cCCCEEEE
Q 004785 313 RDDERISL 320 (730)
Q Consensus 313 pDg~rI~~ 320 (730)
+|++.|++
T Consensus 226 ~~g~~ia~ 233 (305)
T PF07433_consen 226 RDGRLIAV 233 (305)
T ss_pred CCCCEEEE
Confidence 99999987
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.53 E-value=0.00089 Score=71.08 Aligned_cols=184 Identities=14% Similarity=0.197 Sum_probs=119.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC---C------CCCCCC------------CCeEEEEECCCCC--EEEEEeCCCeEEEEE
Q 004785 79 DARRGLASWVEAESLHHLRPKY---C------PLSPPP------------RSTIAAAFSPDGK--TLASTHGDHTVKIID 135 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t---~------~L~gH~------------~~Vt~lafSPDG~--~LaSgS~DgtVrVWD 135 (730)
..|..|++|.+.|.|.++.-.. | .+.+|. ..|..+.|-.++. .++..++|.+|++|.
T Consensus 36 ~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWK 115 (460)
T COG5170 36 ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWK 115 (460)
T ss_pred cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeee
Confidence 4567888888889888887542 1 244553 3578899887543 466667999999998
Q ss_pred CCCCe-------------------------------------EE-----EEE-ecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004785 136 CQTGS-------------------------------------CL-----KVL-HGHRRTPWVVRFHPLNPTIIASGSLDH 172 (730)
Q Consensus 136 l~tg~-------------------------------------~l-----~~l-~gH~~~V~sVafSP~dg~lLaSgS~Dg 172 (730)
+.... .+ +.+ ..|.--|.++.|+. +...++++ .|-
T Consensus 116 iyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdL 193 (460)
T COG5170 116 IYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDL 193 (460)
T ss_pred eecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cce
Confidence 83220 00 111 24666678899987 66666664 566
Q ss_pred cEEEEECCCCeE----EEEecCC-----CCeEEEEEcCCCC--EEEEEECCeEEEEEcCCCccccCCe------------
Q 004785 173 EVRLWNASTAEC----IGSRDFY-----RPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSPR------------ 229 (730)
Q Consensus 173 tVrLWDl~tg~~----i~~l~h~-----~~V~sVafSPdG~--~LAsgSdd~I~VWDl~t~~~~~~~~------------ 229 (730)
.|.+|++..-.. +-..+|. .-|++..|+|... +.++.+.+.|++-|++.........
T Consensus 194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 799999875322 2222233 3578999999543 5556667779999998543211000
Q ss_pred -EEecCCCCeEEEEEccCCCeEEE----EEeeCCccCCCc
Q 004785 230 -IVLRTRRSLRAVHFHPHAAPLLL----TAEVNDLDSSES 264 (730)
Q Consensus 230 -~l~~h~~~V~sVaFSPdG~~Lla----tgsvwdl~s~~~ 264 (730)
.+.+-...|..+.|+++|+++++ +..+||+...+.
T Consensus 274 ~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~ 313 (460)
T COG5170 274 DFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN 313 (460)
T ss_pred hhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC
Confidence 11122457889999999998886 556898875443
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.48 E-value=0.0018 Score=76.82 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=120.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
+...++-|+-.+.+..+|+.+.+.. -....|+-|.. +++.|.+|...|+|.+-|..+.+.++.+..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4455666666666777787665321 11223555544 58899999999999999999999999999999999887
Q ss_pred EEccCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCcc
Q 004785 156 RFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREE 224 (730)
Q Consensus 156 afSP~dg~lLaSgS~---------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~~~ 224 (730)
.. .+++|++++. |.-|++||++..+.+.-+.....-.-+.|+|.-. .+++.+ .+...+-|..+...
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 77 5788998874 5678999999988777666555556788888543 455554 66688888433222
Q ss_pred c-cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 225 T-SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 225 ~-~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
. ............+..+++|++|..++.+-.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 1 112233444566999999999997777654
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00095 Score=77.01 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=76.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004785 79 DARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG 139 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~-------------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg 139 (730)
.....|+.|+.||.+++..+.+. +|.||++.|.-+.|+.+.+.|-+...+|.|.||-+-.|
T Consensus 24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg 103 (1189)
T KOG2041|consen 24 KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG 103 (1189)
T ss_pred ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence 45678999999999999987642 47799999999999999999999888999999998766
Q ss_pred eEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785 140 SCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 140 ~~l~~l~--gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (730)
.-...+. ..+..|.+++|+. ++..+...-.||.|.+=.+
T Consensus 104 sW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 104 SWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred cHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEee
Confidence 4222111 1334578899998 7777776667776655443
No 295
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.47 E-value=0.00034 Score=87.28 Aligned_cols=142 Identities=11% Similarity=0.144 Sum_probs=112.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
.....-++|+.||.|++|.-..+ +..|. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|....
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKAL 2295 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccc
Confidence 34456678888888888875443 12344 789999999999999999999999999976 66777888999888
Q ss_pred EEEEEccCCCCEEEEEe---CCCcEEEEECCCC---eEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004785 153 WVVRFHPLNPTIIASGS---LDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS---~DgtVrLWDl~tg---~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~ 225 (730)
...+|-. ..+++++ .++.+.+||.... .++. ..|.+.++++++-|..++|++|+.++ |++||++..+..
T Consensus 2296 ~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2296 SDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred cceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 8888853 6677754 5788999997542 2333 66999999999999999999999554 999999988753
Q ss_pred c
Q 004785 226 S 226 (730)
Q Consensus 226 ~ 226 (730)
.
T Consensus 2372 h 2372 (2439)
T KOG1064|consen 2372 H 2372 (2439)
T ss_pred H
Confidence 3
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00084 Score=73.40 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=108.0
Q ss_pred CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 102 PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
.+.+|...|.+++|||... +|..++.+.+|+|.|+++...+..+..| ..+++++|.-++.++++.|...|.|.|+|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 3567888899999999665 8889999999999999999999999888 6799999999788889999999999999998
Q ss_pred CCeEE-EEec---CCCCeEEEEE------cCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785 181 TAECI-GSRD---FYRPIASIAF------HASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (730)
Q Consensus 181 tg~~i-~~l~---h~~~V~sVaf------SPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L 250 (730)
..+-. ..+. ...+|..++. .+.|.+|+ +.--.+..|.+........+....+..+...++..++-.+++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv-~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLV-FALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHL 345 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEE-eeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceE
Confidence 65432 1111 1233443332 22333333 333346778776554433232334445667778888877888
Q ss_pred EEEEe
Q 004785 251 LLTAE 255 (730)
Q Consensus 251 latgs 255 (730)
+++..
T Consensus 346 l~tyR 350 (463)
T KOG1645|consen 346 LLTYR 350 (463)
T ss_pred EEEec
Confidence 88765
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.42 E-value=0.00095 Score=79.01 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=111.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEECCCCeE
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSC 141 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~---------DgtVrVWDl~tg~~ 141 (730)
...+.+++.+++|...|+|-+-|..+. ++..|++.|.++.. .|++|++++. |.-|+|||++..+.
T Consensus 181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred EEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 334567889999999999999999876 57899999987766 5899999976 67799999998887
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE---CCCCe-EEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEE
Q 004785 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN---ASTAE-CIGSRD-FYRPIASIAFHASGELLAVAS-GHKLY 215 (730)
Q Consensus 142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD---l~tg~-~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~ 215 (730)
+.-+.-+.++ .-+.|+|.=...++.++..|...+-| +.... .+..+. ....+....++++|+.|+.|. ++.|.
T Consensus 259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~ 337 (1118)
T KOG1275|consen 259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN 337 (1118)
T ss_pred cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence 7777666664 55889996677888999999999999 33321 122232 445599999999999999998 45599
Q ss_pred EEE
Q 004785 216 IWR 218 (730)
Q Consensus 216 VWD 218 (730)
+|.
T Consensus 338 ~wa 340 (1118)
T KOG1275|consen 338 LWA 340 (1118)
T ss_pred eec
Confidence 997
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.0004 Score=79.96 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=100.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------------EEEEEecCCCCcEEEEEccCCCCEEEEEeC
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~ 170 (730)
......|+.|+.+..+||.|+.||.++|..+.+.. .-+.+.||.+.|..+.|+. +.+.+-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 34568899999999999999999999999875421 2246789999999999998 7788888899
Q ss_pred CCcEEEEECCCCeEEEEe---cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004785 171 DHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246 (730)
Q Consensus 171 DgtVrLWDl~tg~~i~~l---~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPd 246 (730)
+|-|.+|-+-+|...... ..++-|.+++|..||..+...-.++ |.|=.++....... .+. ......+.|++|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk--g~~l~hv~ws~D 167 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK--GQLLAHVLWSED 167 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--hheccceeeccc
Confidence 999999999888654332 2456789999999999877766333 43333322211000 011 112346789998
Q ss_pred CCeEEE
Q 004785 247 AAPLLL 252 (730)
Q Consensus 247 G~~Lla 252 (730)
.+.+++
T Consensus 168 ~~~~Lf 173 (1189)
T KOG2041|consen 168 LEQALF 173 (1189)
T ss_pred HHHHHh
Confidence 876554
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.39 E-value=0.024 Score=63.95 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=146.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-CC-CCCCCCeEEEEECCCCCEEEEEeC---------------CCeEEEEECCCCeEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYC-PL-SPPPRSTIAAAFSPDGKTLASTHG---------------DHTVKIIDCQTGSCL 142 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~-~L-~gH~~~Vt~lafSPDG~~LaSgS~---------------DgtVrVWDl~tg~~l 142 (730)
.|..|++. ...-|.+|.-... ++ .-....|..+.|||++++|.+=+. +..+.+||+.+|..+
T Consensus 43 ~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv 121 (561)
T COG5354 43 LGTYLFSE-HAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV 121 (561)
T ss_pred cchheehh-hccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE
Confidence 44444433 3344667765433 11 112345899999999999998654 235999999999999
Q ss_pred EEEecCCCC--cE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ec--CCCCeEEEEEcCCCC--EEEEEE----
Q 004785 143 KVLHGHRRT--PW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--FYRPIASIAFHASGE--LLAVAS---- 210 (730)
Q Consensus 143 ~~l~gH~~~--V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~--h~~~V~sVafSPdG~--~LAsgS---- 210 (730)
..+.+...+ .+ -+.|+- +..+++-. ....++|+++ ++..... +. ....|....|+|.|+ .|++-.
T Consensus 122 ~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 122 FSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred eeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccC
Confidence 988876665 56 688988 66666654 3346999998 4332211 11 135688889999754 455443
Q ss_pred --CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCC
Q 004785 211 --GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAH 288 (730)
Q Consensus 211 --dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~ 288 (730)
...++||.+.....+.... +. ...=..+.|.+.|+++++-....- .+ +...|-...+.+-.+.
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~-lf--k~~~~qLkW~~~g~~ll~l~~t~~-ks-----------nKsyfgesnLyl~~~~ 263 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKN-LF--KVSGVQLKWQVLGKYLLVLVMTHT-KS-----------NKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCcEEEEEEccCCCeeeeee-eE--eecccEEEEecCCceEEEEEEEee-ec-----------ccceeccceEEEEeec
Confidence 2339999998665433111 11 122247889999998876543111 11 1111111234443333
Q ss_pred CCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCCCCccceecc
Q 004785 289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP 360 (730)
Q Consensus 289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~~q~~~~v~p 360 (730)
..+ +..+. +...|+...+|.|++++.++..+-.++....+. +.+. +.++-+++-..-...+|
T Consensus 264 e~~---i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~--lr~N----l~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 264 ERS---IPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD--LRGN----LRFYFPEQKRNTIFFSP 325 (561)
T ss_pred ccc---cceec-cccccceeeeecccCCceeEEecccccceeecc--cccc----eEEecCCcccccccccC
Confidence 211 11111 234477889999999999887766655444443 3322 44555544444444333
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.38 E-value=0.00036 Score=72.54 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=93.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCC-e----EEEEECCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecCC
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLSPPPRS-T----IAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~-V----t~lafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
.+..++.+..|+.+-+.+.+.-.-..|.-. + .+.+.-..+..|.++.- -+..++|+++..+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 567788899999998888764210111111 1 12222223444444321 2345667765544332222233
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEcC-CCCEEEEEECC-eEEEEEcCC
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHA-SGELLAVASGH-KLYIWRYNM 221 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafSP-dG~~LAsgSdd-~I~VWDl~t 221 (730)
..|.+++-+|...+++++|+.||.+-+||.+....... ..|+.+|+.+-|+| ++..|++++.+ .+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 44999999997778889999999999999998754433 34899999999999 45688888855 499999875
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0021 Score=75.47 Aligned_cols=135 Identities=20% Similarity=0.221 Sum_probs=102.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~ 186 (730)
...++|++++ +++|+.|+.+|.|++++.. +.. .....|... .- +|.+++||+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 3457788876 7899999999999999975 433 444456543 33 89999999999999999999999999
Q ss_pred EecCCCCeEEEEEcCC-----CCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 187 SRDFYRPIASIAFHAS-----GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 187 ~l~h~~~V~sVafSPd-----G~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.+....++.+|+++|| .+.+++|+..++.++.-+.-+... ...+....+.|.++.|. |.+++.+..
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~-~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD-SVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc-ceeeecCccceEEEEec--CcEEEEecC
Confidence 9999999999999998 457788876657777544332211 22455668899999995 666665543
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00046 Score=74.17 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE---EEEEec
Q 004785 80 ARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC---LKVLHG 147 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~---l~~l~g 147 (730)
.+..++.|...|.|-.+|++.. ...-|...|+++..-. ++++|.+.+-+|+|++||++--++ +..+.|
T Consensus 263 s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 263 SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 4678889999999999999764 2335888999988777 788898888999999999977666 889999
Q ss_pred CCCCcEEE--EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC-----CeEEEEEc
Q 004785 148 HRRTPWVV--RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-----PIASIAFH 200 (730)
Q Consensus 148 H~~~V~sV--afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~-----~V~sVafS 200 (730)
|-..-.-+ -+++ ....+++++.|...+||.++.|..+.++.... .+.+++|+
T Consensus 343 HvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 96544333 3455 66788889999999999999999988876543 34455554
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.36 E-value=0.05 Score=57.70 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=105.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------C-CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-
Q 004785 79 DARRGLASWVEAESLHHLRPKYC--------P-LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH- 148 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~--------~-L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH- 148 (730)
++|+.|+ ...|..|.+=..+.. + -+.....-.-++||||+.+||.+...|+|+++|+.. ..+..+..-
T Consensus 7 ~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 7 SDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred CCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 3444333 345666665554432 1 122333467899999999999999999999999864 444444321
Q ss_pred ------CCCcEEEEEccCC-----CCEEEEEeCCCcEEEEECCCC-----eEEEEec----CCCCeEEEEEcCCCCEEEE
Q 004785 149 ------RRTPWVVRFHPLN-----PTIIASGSLDHEVRLWNASTA-----ECIGSRD----FYRPIASIAFHASGELLAV 208 (730)
Q Consensus 149 ------~~~V~sVafSP~d-----g~lLaSgS~DgtVrLWDl~tg-----~~i~~l~----h~~~V~sVafSPdG~~LAs 208 (730)
...|-.+.|-+.. ...|+.-..+|.++-+-+..+ +....+. +...|.++.|+|..++|++
T Consensus 85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV 164 (282)
T ss_pred ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence 2345556665422 225666677777776665322 2223332 4678999999999998888
Q ss_pred EE----CC--------eEEEEEcCCCcc-----------cc------CCe------EE---ecCCCCeEEEEEccCCCeE
Q 004785 209 AS----GH--------KLYIWRYNMREE-----------TS------SPR------IV---LRTRRSLRAVHFHPHAAPL 250 (730)
Q Consensus 209 gS----dd--------~I~VWDl~t~~~-----------~~------~~~------~l---~~h~~~V~sVaFSPdG~~L 250 (730)
|+ ++ ++..|.+-.+.. .. ... .. ......|..+..||||+.|
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L 244 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL 244 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence 86 11 377777643321 00 000 00 1125678999999999976
Q ss_pred EEE
Q 004785 251 LLT 253 (730)
Q Consensus 251 lat 253 (730)
++.
T Consensus 245 a~i 247 (282)
T PF15492_consen 245 ACI 247 (282)
T ss_pred EEE
Confidence 653
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0012 Score=72.29 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=77.4
Q ss_pred EEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 131 VrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS 210 (730)
|++.+..+.+....+.+|...|..++|+|.+..++..++.+.+|+|.|+++...+..+.....+++++|+-|....+.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 56666666666666778888999999999666689999999999999999999888888779999999999887655555
Q ss_pred --CCeEEEEEcCCCcc
Q 004785 211 --GHKLYIWRYNMREE 224 (730)
Q Consensus 211 --dd~I~VWDl~t~~~ 224 (730)
.+.|.|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 34499999988764
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.33 E-value=0.00049 Score=79.61 Aligned_cols=163 Identities=17% Similarity=0.266 Sum_probs=110.9
Q ss_pred CEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCc
Q 004785 82 RGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTP 152 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~~~V 152 (730)
..+++++..+.| +|++... .+.+|...|+.+.|.| ....|++++-|..|..||+++.. ++..+..-...-
T Consensus 83 ~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 83 YWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred eeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 455566555544 5665432 3679999999999999 45689999999999999998854 444444433446
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEE-ecCCCCeEEEEEcCC--CCEEEEEECCeEEEEEcCCCccccCC
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHAS--GELLAVASGHKLYIWRYNMREETSSP 228 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~-l~h~~~V~sVafSPd--G~~LAsgSdd~I~VWDl~t~~~~~~~ 228 (730)
..|+|+-.+++.+++ +..+.|++||++.|.. +.. ..|-..|+++.|..- +..+-...|+.|++||+.+.....
T Consensus 162 sqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~-- 238 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES-- 238 (1081)
T ss_pred ceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc--
Confidence 679999867777766 5566799999998753 333 346677888888652 334444446779999998765422
Q ss_pred eEEecCCCCeEEEEEccCCC
Q 004785 229 RIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 229 ~~l~~h~~~V~sVaFSPdG~ 248 (730)
........+|..-.|-|-|.
T Consensus 239 ~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 239 KRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred ceeccccCcceeccccccCc
Confidence 23344455666666666554
No 306
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.33 E-value=0.0042 Score=66.97 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=112.0
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Q 004785 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----- 138 (730)
Q Consensus 72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t----- 138 (730)
............|+.|...+++.-+..... ....|...|..+-|+-.-.++++.+.|..+.---.+.
T Consensus 71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg 150 (404)
T KOG1409|consen 71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG 150 (404)
T ss_pred ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence 333444456678888888998887765421 3457889999999988888888887765443211111
Q ss_pred ------------------------------------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785 139 ------------------------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (730)
Q Consensus 139 ------------------------------------g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg 182 (730)
-..+..+++|.+.+.+++|.+ ...++++|..|..|.+||+.-+
T Consensus 151 ~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 151 GYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred ceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC
Confidence 123456679999999999999 9999999999999999999754
Q ss_pred eE--EEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785 183 EC--IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE 224 (730)
Q Consensus 183 ~~--i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~ 224 (730)
+- .....|.+.|..+..-+--+.|.+++ |+.|-+||++....
T Consensus 230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 43 34456888888888777777777777 55699999976543
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.31 E-value=0.00088 Score=76.48 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=64.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 183 (730)
.....|.|++++|+..+|+.|+.||+|.+||...+... +....-.++.++||| ++.++++|+.-|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 46678999999999999999999999999998776332 333445678899999 99999999999999999987543
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.27 E-value=0.11 Score=55.31 Aligned_cols=141 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEEe---cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004785 113 AAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH---GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (730)
Q Consensus 113 lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~---gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~ 187 (730)
++.+.||++||.- .|..|-|-..++. ..+.+.+ .....-..++|+| |+.+|+.+...|+|+++|+...+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence 5667899988876 5667777665442 2223322 2233456799999 999999999999999999975443222
Q ss_pred e-------cCCCCeEEEEEcCCC-------CEEEEEECCeEEEEEcCCC--c---cccCCeEEecCCCCeEEEEEccCCC
Q 004785 188 R-------DFYRPIASIAFHASG-------ELLAVASGHKLYIWRYNMR--E---ETSSPRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 188 l-------~h~~~V~sVafSPdG-------~~LAsgSdd~I~VWDl~t~--~---~~~~~~~l~~h~~~V~sVaFSPdG~ 248 (730)
- .....|..+.|-+-. ++|+..-.+.++=|-+..+ + +.............|.++.++|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 1 123467777775432 3455555665555544221 1 1111111122367899999999998
Q ss_pred eEEEEEe
Q 004785 249 PLLLTAE 255 (730)
Q Consensus 249 ~Llatgs 255 (730)
.|++++.
T Consensus 161 LLlVgG~ 167 (282)
T PF15492_consen 161 LLLVGGC 167 (282)
T ss_pred EEEEecc
Confidence 7777665
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.24 E-value=0.0094 Score=73.76 Aligned_cols=171 Identities=13% Similarity=0.181 Sum_probs=111.6
Q ss_pred cCCCEEEEEeCCCeEEEE----eCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC------------
Q 004785 79 DARRGLASWVEAESLHHL----RPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG------------ 139 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlW----d~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg------------ 139 (730)
.....++.+..+|.|-+. +..... ...-..+|.+++||||+.+|+..+.+++|.+-+- +.
T Consensus 85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 85 ADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD 163 (928)
T ss_pred cCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence 355567777788888877 544432 2334668999999999999999999988877643 11
Q ss_pred ------------eEEEEEec------------------------CCCCcEEEEEccCCCCEEEEEeC---C---CcEEEE
Q 004785 140 ------------SCLKVLHG------------------------HRRTPWVVRFHPLNPTIIASGSL---D---HEVRLW 177 (730)
Q Consensus 140 ------------~~l~~l~g------------------------H~~~V~sVafSP~dg~lLaSgS~---D---gtVrLW 177 (730)
+.-..|+| +...-..|+|-. |+.+|+..+. + ..+|||
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy 242 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVY 242 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEE
Confidence 11111211 111234588988 8899888664 2 579999
Q ss_pred ECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEE--ecCCCCeEEEEEccCCCeE
Q 004785 178 NASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIV--LRTRRSLRAVHFHPHAAPL 250 (730)
Q Consensus 178 Dl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~~~~~~~~l--~~h~~~V~sVaFSPdG~~L 250 (730)
+-. |+....-+ -.+--.+++|-|.|+++|+... ++ |.+|.-+.-+.-. +.+ ......|..+.|++|+..|
T Consensus 243 ~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn~ds~iL 319 (928)
T PF04762_consen 243 SRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWNSDSEIL 319 (928)
T ss_pred CCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCCCCCCceeeEEEECCCCCEE
Confidence 965 66544433 2233357899999999998873 22 7778644332211 112 1345689999999999977
Q ss_pred EEEE
Q 004785 251 LLTA 254 (730)
Q Consensus 251 latg 254 (730)
+...
T Consensus 320 Av~~ 323 (928)
T PF04762_consen 320 AVWL 323 (928)
T ss_pred EEEe
Confidence 6644
No 310
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.026 Score=64.22 Aligned_cols=175 Identities=13% Similarity=0.141 Sum_probs=116.8
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEECCC
Q 004785 73 IFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQT 138 (730)
Q Consensus 73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~-----------DgtVrVWDl~t 138 (730)
..+--+..|..|++.-..| |.+|--..- .--.|+ .|.-+.|||+.++|+|-+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 3333445666777665544 667765432 122354 4889999999999998764 25799999999
Q ss_pred CeEEEEEecC--CCCcE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE---C
Q 004785 139 GSCLKVLHGH--RRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS---G 211 (730)
Q Consensus 139 g~~l~~l~gH--~~~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS---d 211 (730)
|...+.|..- ...++ -..||- +++++|--..| +|.|++..+-.++.... .-..|....|+|.+++||.=+ +
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cchhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 9988888652 22233 468998 88888876664 69999987644332222 235688899999999998776 2
Q ss_pred C---eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 212 H---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 212 d---~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
+ ++.+..+.+...++.. .-+.-.-..+.|-.+|.+|+.-.
T Consensus 370 ~~parvtL~evPs~~~iRt~---nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTK---NLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred CCcceEEEEecCccceeeec---cceeeeccEEEeccCCcEEEEEE
Confidence 2 2788888777654421 11222224577889999887644
No 311
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.20 E-value=0.028 Score=61.99 Aligned_cols=232 Identities=17% Similarity=0.194 Sum_probs=129.5
Q ss_pred CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ec-------C---------C
Q 004785 90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HG-------H---------R 149 (730)
Q Consensus 90 DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~g-------H---------~ 149 (730)
.+.+.++|+.+++ +......+....|||||+.|+... ++.|++++..++...+.- .| - -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 3467888888873 333356789999999999999885 579999998887544221 12 0 1
Q ss_pred CCcEEEEEccCCCCEEEEEeCC-Cc-----------------------------------EEEEECCCCeEEEE--e---
Q 004785 150 RTPWVVRFHPLNPTIIASGSLD-HE-----------------------------------VRLWNASTAECIGS--R--- 188 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~D-gt-----------------------------------VrLWDl~tg~~i~~--l--- 188 (730)
+.-..+-|+| +++.|+....| .. +.++|+.+++.... .
T Consensus 101 ~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 101 DRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred ccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 2235688999 77766654322 22 33455555443211 1
Q ss_pred -cCCCCeEEEEEcCCCCEEEEE-EC---Ce--EEEEEcCCCccccCCeEEecCCCCe---EEEEEc-cCCCeEEEEEeeC
Q 004785 189 -DFYRPIASIAFHASGELLAVA-SG---HK--LYIWRYNMREETSSPRIVLRTRRSL---RAVHFH-PHAAPLLLTAEVN 257 (730)
Q Consensus 189 -~h~~~V~sVafSPdG~~LAsg-Sd---d~--I~VWDl~t~~~~~~~~~l~~h~~~V---~sVaFS-PdG~~Llatgsvw 257 (730)
.....+..+.|.++++.|++. .+ +. +.++|..++.... .........| ....|. +++..++.....
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~--~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~- 256 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV--VLEETSDGWVDVYDPPHFLGPDGNEFLWISER- 256 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE--EEEEESSSSSSSSSEEEE-TTTSSEEEEEEET-
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE--EEEecCCcceeeecccccccCCCCEEEEEEEc-
Confidence 123457789999999944433 32 22 7788887765422 1122223333 355554 777767665542
Q ss_pred CccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-eeeEecCCCEEEEEecCCC-CCcccceee
Q 004785 258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHD-SGATRTQQS 335 (730)
Q Consensus 258 dl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~~~~~~d-sgs~~~~~~ 335 (730)
+|+ ..+.+.+...+....+..+ ...+. ...++.+++.|++..+.+. .-..++..+
T Consensus 257 --------------~G~-----~hly~~~~~~~~~~~lT~G----~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 257 --------------DGY-----RHLYLYDLDGGKPRQLTSG----DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp --------------TSS-----EEEEEEETTSSEEEESS-S----SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred --------------CCC-----cEEEEEcccccceeccccC----ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 222 1344444333221111111 22232 5789999999999777644 344677777
Q ss_pred cC-CCcceeeecccC
Q 004785 336 LR-SSSSVRLLTYST 349 (730)
Q Consensus 336 ~~-ss~~~~l~~~~~ 349 (730)
+. +....+|+....
T Consensus 314 ~~~~~~~~~LT~~~~ 328 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDG 328 (353)
T ss_dssp TTETTEEEESSTTSS
T ss_pred eCCCCCeEeccCCCC
Confidence 77 666666654433
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.0026 Score=74.28 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC-----------CCEEEEEeCCCcEEEE
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN-----------PTIIASGSLDHEVRLW 177 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d-----------g~lLaSgS~DgtVrLW 177 (730)
.-.++.|+|.| +||.|+.. .|.+.|..+.+.+..+..|...|+.|.|.|.. .-+++++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36789999866 77877654 78899999999999999999999999998831 1257778888999999
Q ss_pred ECCCCeEEEEec-CCCCeEEEEEcC---CCC-EEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785 178 NASTAECIGSRD-FYRPIASIAFHA---SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 178 Dl~tg~~i~~l~-h~~~V~sVafSP---dG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
|...+..+..+. +.+++..++|-+ +.+ +|+.-. ...|.+|+..+|+... ..........++.+.|
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDP 165 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCC
Confidence 999988777766 567888888865 443 444443 4569999999987633 1222233445566766
No 313
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.15 E-value=0.0047 Score=71.86 Aligned_cols=134 Identities=19% Similarity=0.355 Sum_probs=96.1
Q ss_pred CeEEEEECCCC---CEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785 109 STIAAAFSPDG---KTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (730)
Q Consensus 109 ~Vt~lafSPDG---~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg 182 (730)
.|-.+.|++.. .++++.+. ..-.+|++... ..-..+.+|...|+.+.|+|++...+++++.|-.|..||+++.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 46778888843 34555544 45668988542 3335668999999999999999999999999999999999975
Q ss_pred e-EEEEec-CCCCeEEEEEcC-CCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785 183 E-CIGSRD-FYRPIASIAFHA-SGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 183 ~-~i~~l~-h~~~V~sVafSP-dG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
. ++..+. -......|+|+- ++..||+.-+..|++||++.+.. ....+.+|-..|+.+.|..
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc--ceEEecccceeeehHHHhh
Confidence 4 333332 234456788986 45566555455599999998875 2345666777777777764
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.14 E-value=0.0055 Score=67.62 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=84.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcEEEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLSPP--PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRF 157 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~gH--~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~sVaf 157 (730)
+..++....++.+..||.+++++.-. ........ .++..++.++.|+.|..+|..+|+.+....... ........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 45677778899999999987742211 11111111 256788888899999999999998876553222 22222233
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC-CeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004785 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW 217 (730)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~-~V~sVafSPdG~~LAsgS-dd~I~VW 217 (730)
.++.++.++.||.|+++|..+|+.+..+.... .+..--.-.+++ |++++ ++.|+.|
T Consensus 319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 34678889999999999999999988876433 332221222444 55555 5567765
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.11 E-value=0.024 Score=69.49 Aligned_cols=173 Identities=12% Similarity=0.163 Sum_probs=109.5
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC----CC------------
Q 004785 78 RDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC----QT------------ 138 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl----~t------------ 138 (730)
......++.+..+|.|.+-|..+.. ...-..+|.+++||||+.+++..+.++++.+-+- -.
T Consensus 77 l~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~s 156 (1265)
T KOG1920|consen 77 LADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKS 156 (1265)
T ss_pred ecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccc
Confidence 3455677777888888888887763 2345678999999999999999988888766432 00
Q ss_pred -------CeEEEEEecCCC---------------------CcEEEEEccCCCCEEEEE----eCC-CcEEEEECCCCeEE
Q 004785 139 -------GSCLKVLHGHRR---------------------TPWVVRFHPLNPTIIASG----SLD-HEVRLWNASTAECI 185 (730)
Q Consensus 139 -------g~~l~~l~gH~~---------------------~V~sVafSP~dg~lLaSg----S~D-gtVrLWDl~tg~~i 185 (730)
|+.-..|.|..+ .=..|.|-- ++.++++. ..+ +.|++||-. |..-
T Consensus 157 k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Ln 234 (1265)
T KOG1920|consen 157 KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALN 234 (1265)
T ss_pred ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhh
Confidence 111122332111 112488987 88888873 234 789999977 4432
Q ss_pred EEe-cCCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 186 GSR-DFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 186 ~~l-~h~~~V~sVafSPdG~~LAsgS----dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
..- ...+--.+++|-|.|.++++-. ++.|.+|.-+.-....-..........|..++|+.++..|+.
T Consensus 235 s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 235 STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 221 1233446899999999998875 344888875443321100111112334899999999996655
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.10 E-value=0.021 Score=62.88 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCCCCEEEEEeC---------CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785 116 SPDGKTLASTHG---------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (730)
Q Consensus 116 SPDG~~LaSgS~---------DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~ 186 (730)
|||+++++...+ .+.+.|||+++++....... ...+....|+| +++.++... ++.|.++++.+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence 688888777533 46799999999875443333 56788999999 788877765 5789999998886655
Q ss_pred EecCC------------------CCeEEEEEcCCCCEEEEEE
Q 004785 187 SRDFY------------------RPIASIAFHASGELLAVAS 210 (730)
Q Consensus 187 ~l~h~------------------~~V~sVafSPdG~~LAsgS 210 (730)
..... +.-..+-|||||++||...
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 43211 2235788999999998775
No 317
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.05 E-value=0.032 Score=62.03 Aligned_cols=172 Identities=16% Similarity=0.101 Sum_probs=92.6
Q ss_pred cCCCEEEEEeCCCe--EEEEeCCCC---CCCCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785 79 DARRGLASWVEAES--LHHLRPKYC---PLSPPPR-STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (730)
Q Consensus 79 d~g~~L~Sgs~Dgs--IrlWd~~t~---~L~gH~~-~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V 152 (730)
++.+.|+.+..|+. +.+.|+.++ +|....+ ......++++.+.|+.......|+..|+++.+....+......+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 45556665555555 566677776 3544432 23356778888888877677789999999998877777777766
Q ss_pred EEEEEcc-CCCCEEEEEe----------------------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004785 153 WVVRFHP-LNPTIIASGS----------------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV 208 (730)
Q Consensus 153 ~sVafSP-~dg~lLaSgS----------------------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAs 208 (730)
-...|.. .+...++-.- ....|..-|+.+|+....+.....+..+-|+|... +|+.
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 6677753 2444443321 12346667999999888888888899999999655 5555
Q ss_pred EECC---e--EEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEE
Q 004785 209 ASGH---K--LYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 209 gSdd---~--I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPdG~~Lla 252 (730)
+-.+ . -|||-+++..... ..+..+ ...+..=-|.|||+.|..
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNV--KKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred eccCCcceeceEEEEEEcCCCcc--eeeecCCCCcccccccccCCCCEEEE
Confidence 5432 2 3667665443211 111111 223444457777776554
No 318
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.01 E-value=0.13 Score=57.68 Aligned_cols=245 Identities=13% Similarity=0.026 Sum_probs=133.0
Q ss_pred EecCCCEEE-EEeCCCe----EEEEeCCCCCCCCCC--C-CeEEEEECCCCCEEEEEeCC-----------CeEEEEECC
Q 004785 77 GRDARRGLA-SWVEAES----LHHLRPKYCPLSPPP--R-STIAAAFSPDGKTLASTHGD-----------HTVKIIDCQ 137 (730)
Q Consensus 77 ~~d~g~~L~-Sgs~Dgs----IrlWd~~t~~L~gH~--~-~Vt~lafSPDG~~LaSgS~D-----------gtVrVWDl~ 137 (730)
.+.+++.++ +.+..|. |+++|++++++.... . ....+.|.+|++.|+....| ..|++|++.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 333444444 4455444 999999988533211 1 12239999998887776543 248888987
Q ss_pred CCeE--EEEEecCCCC--cEEEEEccCCCCEEEE-EeC--C-CcEEEEECCCC-----eEEEEecCCCCeEEEEEcCCCC
Q 004785 138 TGSC--LKVLHGHRRT--PWVVRFHPLNPTIIAS-GSL--D-HEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGE 204 (730)
Q Consensus 138 tg~~--l~~l~gH~~~--V~sVafSP~dg~lLaS-gS~--D-gtVrLWDl~tg-----~~i~~l~h~~~V~sVafSPdG~ 204 (730)
+... ...|.+.... ...+..++ ++++++. ... + ..+.+.|+..+ +..........+....-+..+.
T Consensus 211 t~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 211 TPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDR 289 (414)
T ss_dssp S-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTE
T ss_pred CChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCE
Confidence 7643 3556554444 45788888 6666554 333 2 45888899875 3444444444443333333444
Q ss_pred EEEEEECC----eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCC
Q 004785 205 LLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP 280 (730)
Q Consensus 205 ~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~ 280 (730)
+++...++ +|...++...........+..+...+.-..+...+.+|+.....+...
T Consensus 290 ~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~-------------------- 349 (414)
T PF02897_consen 290 LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS-------------------- 349 (414)
T ss_dssp EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE--------------------
T ss_pred EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc--------------------
Confidence 44444332 366667766653221225666666555455555677777665433221
Q ss_pred eEEEecCC-CCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeee
Q 004785 281 VICMAGAH-SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL 345 (730)
Q Consensus 281 ~V~l~d~~-s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~ 345 (730)
.+.+.+.. ......+.. +. ...+......+++..+.+.-.+...+.+++..++.+.....+.
T Consensus 350 ~l~v~~~~~~~~~~~~~~--p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPL--PE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEETT-TEEEEEEES--SS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEECCCCcEEeeecC--Cc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 23333322 000000000 00 0112244556889999999999999999999999988877664
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.97 E-value=0.00018 Score=82.22 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=117.4
Q ss_pred CEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeC----CCeEEEEECCCC--eE--EEEEe
Q 004785 82 RGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHG----DHTVKIIDCQTG--SC--LKVLH 146 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~----DgtVrVWDl~tg--~~--l~~l~ 146 (730)
-.++.|..+|.|.+-..... ...+|....++++|++ |-.+||.|-+ |..++|||+.++ .+ ...|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 45567778888888776543 3557888899999999 7788888844 778999999876 21 22232
Q ss_pred c-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC-CCCEEEEEECCeEEEEE-cCCCc
Q 004785 147 G-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGHKLYIWR-YNMRE 223 (730)
Q Consensus 147 g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP-dG~~LAsgSdd~I~VWD-l~t~~ 223 (730)
+ ......+++|-. +.+++.+|.....+.++|++........-....+..+..+| .+.+++.-.++.|-+|| .++-+
T Consensus 151 ~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnie 229 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIE 229 (783)
T ss_pred cccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhc
Confidence 2 334566889986 88999999999999999998432222222334567788888 78899888888899999 44333
Q ss_pred cccCCeEEecCC-----CCeEEEEEccCCCeEEEEE
Q 004785 224 ETSSPRIVLRTR-----RSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 224 ~~~~~~~l~~h~-----~~V~sVaFSPdG~~Llatg 254 (730)
. +....-+. ..+..++|+|...-++++.
T Consensus 230 n---pl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 230 N---PLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred c---HHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 2 11222222 2489999999776555544
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.94 E-value=0.014 Score=64.38 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=89.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE-E
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-V 155 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s-V 155 (730)
+..++.+..++.|..+|..++++. -......... .++..++.++.|+.|+.+|..+|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 557888888899999998877422 1111111222 257788888899999999999999887665332 2221 1
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEE------EEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004785 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS------IAFHASGELLAVAS-GHKLYIWRYNMREET 225 (730)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~s------VafSPdG~~LAsgS-dd~I~VWDl~t~~~~ 225 (730)
.. .++.++.++.|+.|+.||.++|+.+..+........ .... + ..++.+. ++.++.+|..+++..
T Consensus 142 ~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 142 LV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEe
Confidence 22 235666778899999999999998887654432211 1111 3 3555665 466999999888653
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.93 E-value=0.016 Score=58.86 Aligned_cols=106 Identities=18% Similarity=0.080 Sum_probs=73.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCC----C
Q 004785 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY----R 192 (730)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~----~ 192 (730)
++..+++++.++.|..||..+|+.+..+.. .+.+...... .+..++.+..|+.|+.+|..+|+.+... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 567788888999999999999999888765 3332222222 3455666678889999999999998873 321 1
Q ss_pred CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 193 ~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
.........++..++++. ++.|+.+|.++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 122233333478788887 6679999999998643
No 322
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.87 E-value=0.0047 Score=77.69 Aligned_cols=154 Identities=14% Similarity=0.222 Sum_probs=116.7
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
++.|-..|.++.=+|...+.++|+.||.|++|.-..+..+..++. -...|+.+.|+- .|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 345566788888888888999999999999999988888877742 237799999998 888888889999999999973
Q ss_pred CeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785 182 AECIGSRDFYRPIASIAFHASGELLAVAS---GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (730)
Q Consensus 182 g~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-- 255 (730)
.-.+.-..|........|-- ..+++++ +++ +.+||........ .+...|...++.+++-|....+++++.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 22222234777777777764 5666665 444 9999986654422 344779999999999999997777665
Q ss_pred ---eCCccC
Q 004785 256 ---VNDLDS 261 (730)
Q Consensus 256 ---vwdl~s 261 (730)
+||++.
T Consensus 2359 ~v~l~D~rq 2367 (2439)
T KOG1064|consen 2359 EVCLFDIRQ 2367 (2439)
T ss_pred cEEEeehHH
Confidence 677663
No 323
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.86 E-value=0.04 Score=56.03 Aligned_cols=140 Identities=18% Similarity=0.059 Sum_probs=90.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC-----CC---CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLS-----PP---PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~-----gH---~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~ 151 (730)
.+..++....++.|..+|..++++. .. ......+....++..++.+..++.|..+|.++|+.+..+......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 3455666667888999998777321 11 011222333334788888888999999999999998888764432
Q ss_pred c-----------EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004785 152 P-----------WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRY 219 (730)
Q Consensus 152 V-----------~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl 219 (730)
. ..+.+. ++ .++.++.++.+..+|+.+++.+.... ...+.. ....++..|++++ ++.|..||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred CCcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1 122222 33 66666777754444999999765444 333333 2456788888887 666999999
Q ss_pred CCCcc
Q 004785 220 NMREE 224 (730)
Q Consensus 220 ~t~~~ 224 (730)
.+++.
T Consensus 230 ~tG~~ 234 (238)
T PF13360_consen 230 KTGKV 234 (238)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 99875
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.84 E-value=0.03 Score=65.62 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCCEEEEEeCCCeEEEEECCC----C-eEEEEEecCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCeE-------
Q 004785 118 DGKTLASTHGDHTVKIIDCQT----G-SCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAEC------- 184 (730)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~t----g-~~l~~l~gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~------- 184 (730)
||++... .++.|.+.|..+ + +.+..+. -....+.+.++| +++++ +++..+.+|.|.|+.+.+.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 4444433 346799999887 3 3444443 445688899999 55555 5566699999999988553
Q ss_pred -----EEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004785 185 -----IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (730)
Q Consensus 185 -----i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t 221 (730)
+......-.-...+|+++|+...+.. |..|-.|++.+
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23333334445788999998655555 55699999876
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.81 E-value=0.0035 Score=42.61 Aligned_cols=39 Identities=38% Similarity=0.641 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (730)
Q Consensus 139 g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (730)
++++..+..|...|.++.|++ ++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677888999999999999 779999999999999996
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.15 Score=60.89 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=118.5
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEECCCC------eE
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPPRS-TIAAAFSPDGKTLASTHGDH-----TVKIIDCQTG------SC 141 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~-Vt~lafSPDG~~LaSgS~Dg-----tVrVWDl~tg------~~ 141 (730)
...++..++.|..+|.|-+++.... -+..+... |..+-...+..+|++-+.|. .|+|||++.- .+
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 3457788999999999988886543 24556666 44444333446788877764 4899998542 23
Q ss_pred E--EEEec-----CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC--C--Ce-EEEEecCCCCeEEEEEcCCCCE-EEE
Q 004785 142 L--KVLHG-----HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS--T--AE-CIGSRDFYRPIASIAFHASGEL-LAV 208 (730)
Q Consensus 142 l--~~l~g-----H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~--t--g~-~i~~l~h~~~V~sVafSPdG~~-LAs 208 (730)
+ ..+.. ...++.+++++. +-..++.|-.||.|..+.-. . |. ..-....+.+|+.++|-.+++. |++
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 3 12222 245678899998 78899999999999987422 1 11 1112345679999999999986 667
Q ss_pred EECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 209 gSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
++...|.+|.+.... .....+..|...+.+..|++....++++++
T Consensus 190 ~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred EecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC
Confidence 777789999988444 123346667788999999886663444443
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0031 Score=69.90 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=93.0
Q ss_pred CEEEEEeCCCeEEEEeCCC--C-----CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCC--------------
Q 004785 82 RGLASWVEAESLHHLRPKY--C-----PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTG-------------- 139 (730)
Q Consensus 82 ~~L~Sgs~DgsIrlWd~~t--~-----~L~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg-------------- 139 (730)
+.+++++-||.++.|.... + -+..|.+.|.+++.+-||.++.|.++ |..++++|+++-
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 4555666666666665433 1 13345555556666666666666555 666666655321
Q ss_pred --------------------------------e-EE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC----
Q 004785 140 --------------------------------S-CL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---- 181 (730)
Q Consensus 140 --------------------------------~-~l-~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t---- 181 (730)
. .. ..-+-|..+|..+.+.+ .++.+++....|.|.-|....
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccC
Confidence 1 11 11134788899999999 888999998899999998873
Q ss_pred --CeEEEEe----------cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785 182 --AECIGSR----------DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 182 --g~~i~~l----------~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~ 224 (730)
.+....+ ..+....++.|+|+|..+.+-+.+. |+++++++++.
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 1111111 1345678999999999999888555 99999998865
No 328
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.59 E-value=0.04 Score=65.08 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCC--eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC------
Q 004785 106 PPRSTIAAAFSPDGKTLASTH------GDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------ 171 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS------~Dg--tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D------ 171 (730)
....+...++||||+.++..- .|. .|.+++. .+.......+. ..+.-.|+| ++..+.+....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECC-CCCceEEEecCcceEEE
Confidence 334688999999999987765 243 4555564 23332223332 377899999 66655554322
Q ss_pred ------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEE---EEcCCCc-cccCCeEEec-CCCCeEE
Q 004785 172 ------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI---WRYNMRE-ETSSPRIVLR-TRRSLRA 240 (730)
Q Consensus 172 ------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~V---WDl~t~~-~~~~~~~l~~-h~~~V~s 240 (730)
+.+.+.++..++... ...+.|..+.|||||+.|+...+++|+| -....+. .+..+..+.. -...+.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 234334554444332 3456799999999999999888777776 4433332 1111222322 2334688
Q ss_pred EEEccCCCeE
Q 004785 241 VHFHPHAAPL 250 (730)
Q Consensus 241 VaFSPdG~~L 250 (730)
+.|..++..+
T Consensus 502 l~W~~~~~L~ 511 (591)
T PRK13616 502 LDWRTGDSLV 511 (591)
T ss_pred ceEecCCEEE
Confidence 9999999844
No 329
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.039 Score=64.92 Aligned_cols=136 Identities=12% Similarity=0.161 Sum_probs=98.7
Q ss_pred EEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC------C------EEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785 84 LASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG------K------TLASTHGDHTVKIIDCQTGSCLKVLHG 147 (730)
Q Consensus 84 L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG------~------~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (730)
|+.-+....|.+.|..+- .+..|+..|+.+.|.|-. . +||++...|.|.+||+..+..+..+..
T Consensus 28 LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~ 107 (1062)
T KOG1912|consen 28 LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH 107 (1062)
T ss_pred eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC
Confidence 333444556666675543 466799999999998721 1 466676789999999999998888999
Q ss_pred CCCCcEEEEEccC--CC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCeE-EEEEcC-CCCEEE-EEECCeEEEEEc
Q 004785 148 HRRTPWVVRFHPL--NP-TIIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHA-SGELLA-VASGHKLYIWRY 219 (730)
Q Consensus 148 H~~~V~sVafSP~--dg-~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~-sVafSP-dG~~LA-sgSdd~I~VWDl 219 (730)
|..++..+.|-+. +. ++++.-....+|.+|+..+|+..........+. ++.++| |.+.+. .++.+.+.+-+.
T Consensus 108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 9999999998762 33 567777778899999999999998877555554 488888 455444 444555555554
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.58 E-value=0.027 Score=68.03 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=92.8
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC------CCCEEEEEeCCCcEEEEECCCCe--EEEE-
Q 004785 118 DGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL------NPTIIASGSLDHEVRLWNASTAE--CIGS- 187 (730)
Q Consensus 118 DG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~------dg~lLaSgS~DgtVrLWDl~tg~--~i~~- 187 (730)
|.++|+.- .+...|+-.|++.|+.+..++.|... .-..+.|+ .....+.|-.++.+..||.+-.. .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 33444433 34678999999999999999988754 23445551 23456778888999999998632 3321
Q ss_pred ---ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 188 ---RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 188 ---l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
+.......|++-+.+|. ||+|+ +|.||+||- .+.. ....+.+-..+|..|..+.||+++++|+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred ccccccCCCceEEEecCCce-EEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 22445677888877775 56666 566999993 3332 23345566889999999999999999997
No 331
>PRK10115 protease 2; Provisional
Probab=96.57 E-value=2.6 Score=51.00 Aligned_cols=230 Identities=12% Similarity=0.026 Sum_probs=118.5
Q ss_pred eEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEECCCC--eEEEEEecCCCCcEEEEEccCC
Q 004785 92 SLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLN 161 (730)
Q Consensus 92 sIrlWd~~t~~--L~gH~~~Vt~lafSPDG~~LaSgS~D------gtVrVWDl~tg--~~l~~l~gH~~~V~sVafSP~d 161 (730)
.|++.|+.++. .......-..++|++|++.|+....+ ..|+++++.++ +....+.+.........+.+.+
T Consensus 154 ~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d 233 (686)
T PRK10115 154 GIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTS 233 (686)
T ss_pred EEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCC
Confidence 47888887775 22222222569999999877766542 47888999888 4445565444444433343435
Q ss_pred CCEEEEEe---CCCcEEEEECC--CCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C--eEEEEEcCCCccccCCeEEec
Q 004785 162 PTIIASGS---LDHEVRLWNAS--TAECIGSRDFYRPIASIAFHASGELLAVASG-H--KLYIWRYNMREETSSPRIVLR 233 (730)
Q Consensus 162 g~lLaSgS---~DgtVrLWDl~--tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d--~I~VWDl~t~~~~~~~~~l~~ 233 (730)
+++++..+ .++.+.+++.. +++....+.....+..-..+. +..|..-++ + .-+|..+..... .....+..
T Consensus 234 ~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~ 311 (686)
T PRK10115 234 KHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIP 311 (686)
T ss_pred CCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEEEcCCCCCceEEEecCCCc-ccCeEEEC
Confidence 55444432 34679999953 344333333333222212233 344444442 2 234443332211 12234555
Q ss_pred C-C-CCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeE
Q 004785 234 T-R-RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSF 311 (730)
Q Consensus 234 h-~-~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~F 311 (730)
+ . ..|..+.++ +++++.+....... .+.+.+........+....+. ......+
T Consensus 312 ~~~~~~i~~~~~~--~~~l~~~~~~~g~~--------------------~l~~~~~~~~~~~~l~~~~~~---~~~~~~~ 366 (686)
T PRK10115 312 PRENIMLEGFTLF--TDWLVVEERQRGLT--------------------SLRQINRKTREVIGIAFDDPA---YVTWIAY 366 (686)
T ss_pred CCCCCEEEEEEEE--CCEEEEEEEeCCEE--------------------EEEEEcCCCCceEEecCCCCc---eEeeecc
Confidence 5 2 367777776 44666665432211 111111111110011000000 0112223
Q ss_pred --ecCCCEEEEEecCCCCCcccceeecCCCcceeeeccc
Q 004785 312 --VRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS 348 (730)
Q Consensus 312 --SpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~ 348 (730)
.++++.+.+...+...+...+..+..+...+.|+...
T Consensus 367 ~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~ 405 (686)
T PRK10115 367 NPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTE 405 (686)
T ss_pred cCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecC
Confidence 3677889999999999999999998877666666443
No 332
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.01 Score=68.33 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=81.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i 185 (730)
...|.-+.|+|.-.+||++..+|.|.+..+. ...+.++.-|...++ +++|.| +|++++.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4467889999999999999999999999887 777888887888888 999999 8999999999999999999999888
Q ss_pred EE--ecCCCCeEEEEEcC
Q 004785 186 GS--RDFYRPIASIAFHA 201 (730)
Q Consensus 186 ~~--l~h~~~V~sVafSP 201 (730)
.. +-....|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 44566788888874
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.29 Score=54.79 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=100.9
Q ss_pred CeEEEEECCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe--CCCcEEEEECCCCeEE
Q 004785 109 STIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECI 185 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS--~DgtVrLWDl~tg~~i 185 (730)
.-..++.++++..++. ...+..|.+.|..+.+.+....--. ....++++|+++.+.++-. .++++.+.|-.+++.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 3457888888885544 4456899999988877766554222 5678999994445555544 4789999999999888
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 186 GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 186 ~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
....-...-..++++|+|+.+++.. ++.|.+.|........ .......-......+.++|+|.++.....
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 8754332238999999999888877 4559999976654431 11111233345578899999997666543
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.012 Score=68.53 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 184 (730)
|...|.--+++..+++|+.|+.-|.|++|+-..++... ...+-.+.+.....++ +..+++.|+..|.|.++-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 44455555666789999999999999999976665432 2223445566777888 888999999999999998876432
Q ss_pred E---EE--e--cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCC-ccccCCeEEecCCCCeEEEEEc
Q 004785 185 I---GS--R--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFH 244 (730)
Q Consensus 185 i---~~--l--~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~-~~~~~~~~l~~h~~~V~sVaFS 244 (730)
. .. . .|+..|++++|++|+..|++|.+ |+|.+-.++.. ........+..-...|-.+...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 11 1 26789999999999999999985 45777766662 2122233444556677666654
No 335
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.44 Score=53.35 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=114.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785 83 GLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (730)
Q Consensus 83 ~L~Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVa 156 (730)
..+....++.|.+.|..+.+.. .-......++|+++++.++.+.. ++++.+.|..+++.+.....-..+ ..++
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 4444555788999986554211 11115678999999988877755 689999999999888775443333 8899
Q ss_pred EccCCCC-EEEEEeCCCcEEEEECCCCeEEE-----EecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCcccc
Q 004785 157 FHPLNPT-IIASGSLDHEVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETS 226 (730)
Q Consensus 157 fSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~-----~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~ 226 (730)
+.| ++. .+++-..++.|.+.|........ ..........+.++|+|+++++..++ .+.+.|..++....
T Consensus 167 ~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999 666 55555688999999987665553 13333455779999999987777633 58888887765433
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 227 SPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
.. ...+.. ....+.++|+|+.+...
T Consensus 246 ~~-~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 246 TD-LPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ec-cccccC-CCCceeECCCCCEEEEE
Confidence 10 111222 56678999999977665
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.33 E-value=0.085 Score=61.98 Aligned_cols=134 Identities=8% Similarity=-0.023 Sum_probs=90.6
Q ss_pred EEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------------------
Q 004785 113 AAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS---------------------- 169 (730)
Q Consensus 113 lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS---------------------- 169 (730)
+=+++||+.+...++ .+.+.+.|.++.+...++.--. ....++++| ++.++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 445678877654443 5678888998888777665332 446678888 666665554
Q ss_pred ------------------CCCcEEEEECCC-----CeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc
Q 004785 170 ------------------LDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE 224 (730)
Q Consensus 170 ------------------~DgtVrLWDl~t-----g~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~ 224 (730)
.++.|.+.|.++ .+.+..+.-......+.++|||+++++++ ++.|.|.|+.+.+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 234588888887 45666677778889999999999999988 45699999987653
Q ss_pred cc-----C---CeEEecCCCCeEEEEEccCCC
Q 004785 225 TS-----S---PRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 225 ~~-----~---~~~l~~h~~~V~sVaFSPdG~ 248 (730)
.- . ......-.......+|+++|.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ 387 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN 387 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence 10 0 001111133456788999987
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.077 Score=62.08 Aligned_cols=143 Identities=12% Similarity=0.009 Sum_probs=100.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-----EEE-
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-----KVL- 145 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l-----~~l- 145 (730)
....++.++.|+..|.+.+|+-..+. ..+-.+.+..+..|++..++|.|+..+.|.++-+..+... ..+
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 34577899999999999999987662 2235566778888999899999999999999987663221 111
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (730)
Q Consensus 146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-----~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~ 220 (730)
+.|...|+++.|++ ++..+++|...|+|.+-.+.+. +....+...+.|-.+... ..+|.+++--+..++++.
T Consensus 121 ~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~~Lc~tE 197 (726)
T KOG3621|consen 121 KSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRCILCQTE 197 (726)
T ss_pred ccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhhheeecc
Confidence 34788899999999 9999999999999998888762 112223455666666543 334444443344555554
Q ss_pred CC
Q 004785 221 MR 222 (730)
Q Consensus 221 t~ 222 (730)
..
T Consensus 198 ~e 199 (726)
T KOG3621|consen 198 AE 199 (726)
T ss_pred hh
Confidence 43
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.13 E-value=0.092 Score=60.02 Aligned_cols=131 Identities=12% Similarity=0.159 Sum_probs=64.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l 188 (730)
....+.++|+|++++. +.||.-.|+.....+.... +.-....|.+ .++ +++-...++|.|+.--+.+..+.+
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence 3567888888887777 4566666776444433221 2233467776 333 555555777777532222222233
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 189 ~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.....+..+-. |.+|...+++.|.+||+.+++.+. .+ ... .|..|.|+++|.+++..++
T Consensus 106 ~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~---~i-~v~-~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 106 KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR---RI-DVS-AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE---EE-SS--E-EEEEE-TTSSEEEEE-S
T ss_pred cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee---EE-ecC-CCcEEEEECCCCEEEEEeC
Confidence 33333443332 777777777778888887776544 22 222 3778888888887776654
No 339
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.07 E-value=0.34 Score=54.23 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=88.5
Q ss_pred EEEEeCCCCCCCCC-CCCeEEEEECCCCCEEEEE-eCC----CeEEEEECCCCeEEEE-EecCCCCcEEEEEccCCCCEE
Q 004785 93 LHHLRPKYCPLSPP-PRSTIAAAFSPDGKTLAST-HGD----HTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 93 IrlWd~~t~~L~gH-~~~Vt~lafSPDG~~LaSg-S~D----gtVrVWDl~tg~~l~~-l~gH~~~V~sVafSP~dg~lL 165 (730)
-.++|...-. .++ ...+....+||||++||.+ +.. ..|+++|+++|+.+.. +... ....+.|.+ +++.|
T Consensus 109 evllD~n~l~-~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-d~~~~ 184 (414)
T PF02897_consen 109 EVLLDPNELA-KDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-DGKGF 184 (414)
T ss_dssp EEEEEGGGGS-TTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-TSSEE
T ss_pred EEEEcchHhh-ccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-CCCEE
Confidence 4556654321 122 2334478999999998876 222 4599999999987653 2322 123499999 65555
Q ss_pred EEEeCC-----------CcEEEEECCCCeEE--EEec--CCCC-eEEEEEcCCCCEEEEEE---CC--eEEEEEcCCCc-
Q 004785 166 ASGSLD-----------HEVRLWNASTAECI--GSRD--FYRP-IASIAFHASGELLAVAS---GH--KLYIWRYNMRE- 223 (730)
Q Consensus 166 aSgS~D-----------gtVrLWDl~tg~~i--~~l~--h~~~-V~sVafSPdG~~LAsgS---dd--~I~VWDl~t~~- 223 (730)
+....| ..|++|.+.+.... ..+. .... ...+..++|+++|+..+ .. .+++.|+....
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 444322 23888998876432 3343 2333 67889999999887665 22 28888887751
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
.......+......+....-+..+.+++.+
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~T 294 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHHGDRLYILT 294 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEETTEEEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEccCCEEEEee
Confidence 111223444444444443333344444333
No 340
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=95.99 E-value=0.004 Score=52.21 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCe
Q 004785 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQ 72 (730)
Q Consensus 30 ~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ 72 (730)
+|.|||||+|+...++|.++.+++.....||.+..+.+..|-+
T Consensus 3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n~i~~N~kfiA 45 (65)
T PF08953_consen 3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSNFIAANPKFIA 45 (65)
T ss_dssp ----TTTT-EEEE--GGGSEES--B-----SS-CEEE-SSEEE
T ss_pred ccccccccccCccCCccccCcCEEEeCccccCCeEEEcCCEEE
Confidence 6899999999999999999999999999999999888866633
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.99 E-value=0.01 Score=40.23 Aligned_cols=32 Identities=44% Similarity=0.586 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (730)
Q Consensus 104 ~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD 135 (730)
..|...|.++.|++++.++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35778899999999999999999999999996
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.029 Score=64.75 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=74.4
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeE-EEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~-sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
..+.-+.|+| .-.++|.+..+|.|.+.-+. .+.+..+. ++..+. +++|.|||++||+|- |++|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 99999999999999999988 77788877 666676 999999999999998 5669999999987654
Q ss_pred CCeEEecCCCCeEEEEEcc
Q 004785 227 SPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSP 245 (730)
.. ...-...|..+.|++
T Consensus 99 ~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SF--LFSVETDISKGIWDR 115 (665)
T ss_pred cc--ccccccchheeeccc
Confidence 21 233456778888863
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.84 E-value=0.26 Score=52.02 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=92.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g---H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~ 153 (730)
..+.+..++.++..+.+.-.|.+++.+.- -...|.+-+.- -|++++.|...+.+++.+.++|+....+..-. .|.
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk 96 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVK 96 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhc
Confidence 34567788888888888888888774321 11223222221 47889999999999999999998887776433 233
Q ss_pred E-EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe-EEEEEcC-CCCEEEEEECCe
Q 004785 154 V-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI-ASIAFHA-SGELLAVASGHK 213 (730)
Q Consensus 154 s-VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V-~sVafSP-dG~~LAsgSdd~ 213 (730)
+ ....+ ++.++..++.|++.+..|.++..++.+.+-.+.+ .+-+..| ++.+.++...+.
T Consensus 97 ~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 97 VRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred cceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 2 34455 8899999999999999999999998887655443 3445566 454444443443
No 344
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.80 E-value=0.42 Score=50.45 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=88.8
Q ss_pred CeEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE-CCCCeE
Q 004785 109 STIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN-ASTAEC 184 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD-l~tg~~ 184 (730)
.+...++++||+.+|... ....++++.. +.....+. -...+..-.|++ ++.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887766 3345666554 33232221 223677889999 677777766666677773 333332
Q ss_pred EEE-ec---CCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCcc-----ccCCeEEe-cCCCCeEEEEEccCCCeE
Q 004785 185 IGS-RD---FYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREE-----TSSPRIVL-RTRRSLRAVHFHPHAAPL 250 (730)
Q Consensus 185 i~~-l~---h~~~V~sVafSPdG~~LAsgS----dd~I~VWDl~t~~~-----~~~~~~l~-~h~~~V~sVaFSPdG~~L 250 (730)
... .. ....|.++.+||||..+|... +++|+|=-+..... +..+..+. .....+..+.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 221 11 222899999999999888776 44476665532211 11111222 235688999999999866
Q ss_pred EEEEe
Q 004785 251 LLTAE 255 (730)
Q Consensus 251 latgs 255 (730)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 65543
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.79 E-value=0.49 Score=43.96 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=65.6
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785 110 TIAAAFSP---DG-KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (730)
Q Consensus 110 Vt~lafSP---DG-~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i 185 (730)
|++|++.. || +.|+.|++|..|++|+- .+.+..+..+ ..|..+.-.. ...|+.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 56666655 33 47999999999999983 4566777655 4466666554 478999999999999976 3444
Q ss_pred EEecCCCCeEEEEEc-CCC--C-EEEEEE-CCeE
Q 004785 186 GSRDFYRPIASIAFH-ASG--E-LLAVAS-GHKL 214 (730)
Q Consensus 186 ~~l~h~~~V~sVafS-PdG--~-~LAsgS-dd~I 214 (730)
.....+..+.++.+. .+| . -|++|- +++|
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 555555556666643 333 2 566665 4444
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.56 Score=56.28 Aligned_cols=135 Identities=9% Similarity=0.172 Sum_probs=90.9
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-----EEEEECCCC------
Q 004785 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-----VRLWNASTA------ 182 (730)
Q Consensus 114 afSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-----VrLWDl~tg------ 182 (730)
+|++.+..++.|+.||.|.+.+ ++-+.+..|+.+...+-..-|.-++.+++++.+.|.+ |+|||+..-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 3567788999999999998887 3345557788777773333344325578888776654 899998742
Q ss_pred eEE---EEec-----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCe
Q 004785 183 ECI---GSRD-----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAP 249 (730)
Q Consensus 183 ~~i---~~l~-----h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~ 249 (730)
.++ ..+. ...++.+++.|-+-+.+|+|-+++ |..+.-+-..... ..........+|+.+.|..+++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 233 2222 245788999999988999998655 7777543221111 12233445779999999999987
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.66 E-value=0.84 Score=56.68 Aligned_cols=142 Identities=11% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC----CCCe
Q 004785 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA----STAE 183 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl----~tg~ 183 (730)
+.|.++.|.-++..|+.+..+|.|.+-|.++... .....-...|.+++|+| +..+++-.+.++++.+-+- -..+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 6799999999999999999999999998877652 22333456799999999 9999988888887766432 1111
Q ss_pred EE-----------EE--------ec----------------------CCCCeEEEEEcCCCCEEEEEE-----C-CeEEE
Q 004785 184 CI-----------GS--------RD----------------------FYRPIASIAFHASGELLAVAS-----G-HKLYI 216 (730)
Q Consensus 184 ~i-----------~~--------l~----------------------h~~~V~sVafSPdG~~LAsgS-----d-d~I~V 216 (730)
.+ .. +. ..+.-.+|+|--||+++|+.. + .+|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11 00 00 001123599999999999854 4 34999
Q ss_pred EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
||-+ +.... .-.....-=.+++|-|.|..+++...
T Consensus 227 ~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 227 YDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred eccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence 9976 32211 11111223357899999997666543
No 348
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.57 Score=50.35 Aligned_cols=152 Identities=13% Similarity=0.200 Sum_probs=102.4
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
.+.+-...|.++.|+|+.+.|++..+...-.||=...|+.++++.-. -...-.|.+.. ++.++++--.++.+.++.+.
T Consensus 80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 35666677999999999999999988888888877889988876421 12345688877 77888888889999988776
Q ss_pred CCeEEEE-------e---cC-CCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecC-------CCCeEEE
Q 004785 181 TAECIGS-------R---DF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-------RRSLRAV 241 (730)
Q Consensus 181 tg~~i~~-------l---~h-~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h-------~~~V~sV 241 (730)
....+.. + .+ +.....++|+|....|.++-..+ +.||.+..............+ -..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5532211 1 22 56788999999999998887665 666665543311111111111 1356788
Q ss_pred EEccCCCeEEEEE
Q 004785 242 HFHPHAAPLLLTA 254 (730)
Q Consensus 242 aFSPdG~~Llatg 254 (730)
.|++....+++-+
T Consensus 239 ~~~~~~~~LLVLS 251 (316)
T COG3204 239 EFNAITNSLLVLS 251 (316)
T ss_pred eecCCCCcEEEEe
Confidence 8887655555433
No 349
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.13 Score=57.40 Aligned_cols=141 Identities=12% Similarity=0.045 Sum_probs=107.4
Q ss_pred EEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------CeEEE---------
Q 004785 85 ASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLK--------- 143 (730)
Q Consensus 85 ~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~--------- 143 (730)
++..+++.|.++|.... .-+-|..+|.++.+++-+..+++....|.|.-|.... .+...
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy 195 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY 195 (558)
T ss_pred eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence 35567888999996532 2346899999999999999999998899999999862 11111
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---------------------------------
Q 004785 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--------------------------------- 190 (730)
Q Consensus 144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h--------------------------------- 190 (730)
.+...+....++.|+| ++..+.+-+.|..|++++.++|+.++.++.
T Consensus 196 ~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 196 GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 1223456678999999 999999999999999999999876554320
Q ss_pred C-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004785 191 Y-RPIASIAFHASGELLAVASGHKLYIWRYNMREETS 226 (730)
Q Consensus 191 ~-~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~ 226 (730)
. ..-..+.|+..|++|..++==+|+|.++.+++..+
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r 311 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR 311 (558)
T ss_pred cCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE
Confidence 0 01245789999999999987789999999887644
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.49 E-value=0.036 Score=65.58 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=82.4
Q ss_pred EEEEECCCCCEEEEEeC----CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785 111 IAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (730)
Q Consensus 111 t~lafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~ 186 (730)
+-..|+|...+|++++. .|.|.||- ++|++-+...- .-.+.+++||| ..-.++.|-.-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence 34568888888887764 57888874 56765433221 11255799999 87888899999999999987655433
Q ss_pred E-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785 187 S-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (730)
Q Consensus 187 ~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~ 224 (730)
. ..|..+|..+.||++|..|.++..-+ |.+|.+.....
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 3 45899999999999999999998644 99998875544
No 351
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.48 E-value=0.22 Score=55.55 Aligned_cols=132 Identities=12% Similarity=0.041 Sum_probs=81.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcEEEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRF 157 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~sVaf 157 (730)
+..++.+..++.+..+|..+++.. ........+. .++..|+.++.|+.|..+|..+|+.+.....-. .......+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 345666777888888888877421 1111111122 246788888899999999999998765443211 11222333
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC-CCeEE-EEEcCCCCEEEEEE-CCeEEEEEc
Q 004785 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIAS-IAFHASGELLAVAS-GHKLYIWRY 219 (730)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~-~~V~s-VafSPdG~~LAsgS-dd~I~VWDl 219 (730)
.+..++.++.||.|.+.|..+|+.+...... ..+.+ ..+ .+..|++++ ++.|+.++.
T Consensus 334 ---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 ---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2456778899999999999999988776532 22322 222 234566666 455877654
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.14 Score=58.60 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEcc
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP 159 (730)
.++.++. ..|+...++.....+- ...+.-....|..++ .+|+-....+|+|+.--+.+..+.++.. ..+. ....
T Consensus 43 ngr~v~V-~g~geY~iyt~~~~r~-k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~--~If~ 116 (443)
T PF04053_consen 43 NGRFVLV-CGDGEYEIYTALAWRN-KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVE--KIFG 116 (443)
T ss_dssp TSSEEEE-EETTEEEEEETTTTEE-EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EE--EEE-
T ss_pred CCCEEEE-EcCCEEEEEEccCCcc-cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccc--eEEc
Confidence 3443333 5677777777432211 122345578898854 4666666888999632222222333321 1122 2222
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-------cccc-CCeEE
Q 004785 160 LNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-------EETS-SPRIV 231 (730)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~-------~~~~-~~~~l 231 (730)
|.+|...+.+ .|.+||+.+++.+..+.... |..+.|+++|++++..+++.++|++.+.. +... ....+
T Consensus 117 --G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 --GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp --SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred --CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE
Confidence 5666665554 79999999999999988665 89999999999999999999998887654 0000 11122
Q ss_pred ecCCCCeEEEEEccC
Q 004785 232 LRTRRSLRAVHFHPH 246 (730)
Q Consensus 232 ~~h~~~V~sVaFSPd 246 (730)
..-...|.+..|..|
T Consensus 193 ~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 193 HEISERIKSGCWVED 207 (443)
T ss_dssp EEE-S--SEEEEETT
T ss_pred EEecceeEEEEEEcC
Confidence 332678888889876
No 353
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.27 E-value=0.62 Score=52.02 Aligned_cols=137 Identities=10% Similarity=-0.021 Sum_probs=82.7
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCC------CCC-----CeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785 83 GLASWVEAESLHHLRPKYCPLSP------PPR-----STIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 83 ~L~Sgs~DgsIrlWd~~t~~L~g------H~~-----~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
.++.+..++.+..+|.++++..- ..+ ....+.-+| .+..++.++.++.+..+|..+|+.+....-
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-- 284 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-- 284 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--
Confidence 45556677778777777663210 000 011112233 355777788899999999999987755431
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-C-CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-Y-RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~-~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
+....+.. .+..++.++.|+.+..+|..+|+.+..... . ....+... .+..|++++ ++.|++.|..+++...
T Consensus 285 ~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 285 GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 11222222 346677778899999999999987765432 1 11222222 244556666 5559999999887543
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.14 E-value=2.6 Score=46.04 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=92.0
Q ss_pred CCeEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-EeCCCcEE
Q 004785 108 RSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GSLDHEVR 175 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS~-----------DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaS-gS~DgtVr 175 (730)
...+.+...|+|.+-++... -+.|+.+|. .+..++.+..+-..-+.|+||| +++.++. =+..+.|.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEE
Confidence 45678888999987766544 133555554 5677777777666778899999 6655554 45558888
Q ss_pred EEECCC--C----eEEEE-e-cCCCCeEEEEEcCCCCEEEEEEC-C-eEEEEEcCCCccccCCeEEecCCCCeEEEEEc-
Q 004785 176 LWNAST--A----ECIGS-R-DFYRPIASIAFHASGELLAVASG-H-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH- 244 (730)
Q Consensus 176 LWDl~t--g----~~i~~-l-~h~~~V~sVafSPdG~~LAsgSd-d-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS- 244 (730)
-|++.. + +.... + ...+..-.++.+.+|.+.+++-. + .|.+|+.+ ++... .+.-....+++++|-
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG 264 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeC
Confidence 887752 2 11111 1 13455667888889987754443 3 69999988 65533 333333677888885
Q ss_pred cCCCeEEEEEeeC
Q 004785 245 PHAAPLLLTAEVN 257 (730)
Q Consensus 245 PdG~~Llatgsvw 257 (730)
++.+.|.+++...
T Consensus 265 ~~~~~L~iTs~~~ 277 (307)
T COG3386 265 PDLNTLYITSARS 277 (307)
T ss_pred CCcCEEEEEecCC
Confidence 4567677666543
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.11 E-value=1.7 Score=45.66 Aligned_cols=142 Identities=12% Similarity=0.050 Sum_probs=93.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC-C--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-----------
Q 004785 79 DARRGLASWVEAESLHHLRPKY-C--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV----------- 144 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t-~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~----------- 144 (730)
..+..|+.|.++| +.+++... . +...+...|..+...++-+.|+.-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3567888888888 78888722 2 1222334499999999877776665 49999999866443321
Q ss_pred ---EecCCCCcEEEE-EccCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEE
Q 004785 145 ---LHGHRRTPWVVR-FHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLY 215 (730)
Q Consensus 145 ---l~gH~~~V~sVa-fSP~dg~lLaSgS~DgtVrLWDl~tg-----~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~ 215 (730)
-......+...+ -....+...+.......|.+|..... +..+.+.....+.+++|. ++.|++|..+...
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~ 160 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFY 160 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceE
Confidence 011222344333 11223444444455558888877653 455667778899999998 7788888888899
Q ss_pred EEEcCCCcc
Q 004785 216 IWRYNMREE 224 (730)
Q Consensus 216 VWDl~t~~~ 224 (730)
+.|+.++..
T Consensus 161 ~idl~~~~~ 169 (275)
T PF00780_consen 161 LIDLNTGSP 169 (275)
T ss_pred EEecCCCCc
Confidence 999987654
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.07 E-value=0.72 Score=48.39 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=81.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE-----------
Q 004785 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG----------- 186 (730)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~----------- 186 (730)
.++.|+.|.++| |++++.........+. +...|..+..-+ .-+.++.-+ |+.++++|+..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 578999999998 9999983332222222 223399999998 666665543 5999999987644333
Q ss_pred ----EecCCCCeEEEE---EcCCCCEEEEEECCeEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 187 ----SRDFYRPIASIA---FHASGELLAVASGHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 187 ----~l~h~~~V~sVa---fSPdG~~LAsgSdd~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
.+.....+...+ -...+..|+++...+|.+|.+....... ...........+..+.|. ++.++.+.
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 122233444444 2234457888878888888886642111 122334456888999998 44455543
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.06 E-value=1.4 Score=49.28 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=79.8
Q ss_pred eEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785 110 TIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~ 186 (730)
.+.=+|..||++|+.+++ ...+++.|+.+++..+.-.+-........++| +.+.++.......|+-.|+.+.+...
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEE
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEE
Confidence 334467889988777766 45788889999986554443323344577788 56766666666789999999988766
Q ss_pred EecCCC-CeEEEEEc--CCCCEEEEEE----C-------------------CeEEEEEcCCCccccCCeEEecCCCCeEE
Q 004785 187 SRDFYR-PIASIAFH--ASGELLAVAS----G-------------------HKLYIWRYNMREETSSPRIVLRTRRSLRA 240 (730)
Q Consensus 187 ~l~h~~-~V~sVafS--PdG~~LAsgS----d-------------------d~I~VWDl~t~~~~~~~~~l~~h~~~V~s 240 (730)
.+.... .+-...|. .|+..++..- + .+|.-.|+.+++. ..+......+..
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccC
Confidence 665443 34346664 4566654331 1 1255556666543 345556778899
Q ss_pred EEEccCCCeEEEEEe
Q 004785 241 VHFHPHAAPLLLTAE 255 (730)
Q Consensus 241 VaFSPdG~~Llatgs 255 (730)
+.|+|....++.=|.
T Consensus 193 ~~fsP~dp~li~fCH 207 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCH 207 (386)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred cccCCCCCCEEEEec
Confidence 999998887777665
No 358
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.83 E-value=1.4 Score=51.20 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=90.4
Q ss_pred CCCCCCCeEEEEECCCC-----CEEEEEeCCCeEEEEECC-----CCeEEEEEecCC-C--C--cEEEEEccCCCCEEEE
Q 004785 103 LSPPPRSTIAAAFSPDG-----KTLASTHGDHTVKIIDCQ-----TGSCLKVLHGHR-R--T--PWVVRFHPLNPTIIAS 167 (730)
Q Consensus 103 L~gH~~~Vt~lafSPDG-----~~LaSgS~DgtVrVWDl~-----tg~~l~~l~gH~-~--~--V~sVafSP~dg~lLaS 167 (730)
..|.-.-|..+.|.|-+ .+||+ -....|.||-+. +++.+..-..+- . + .....||| ...+++.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~V 129 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTV 129 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEE
Confidence 44566679999999942 24554 455789999874 233332221111 1 1 23578999 6666665
Q ss_pred EeCCCcEEEEECCCC--eEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCcccc-CCeEEecCCCCeEEEE
Q 004785 168 GSLDHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETS-SPRIVLRTRRSLRAVH 242 (730)
Q Consensus 168 gS~DgtVrLWDl~tg--~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~-~~~~l~~h~~~V~sVa 242 (730)
-.....-.+.++... .....+...+.|.+.+|..||+.|+++-+.. -+|||-....... ....+..-.+.|.++.
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~ 209 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE 209 (671)
T ss_pred EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE
Confidence 444333345566533 2233366788999999999999988887666 7899865543322 1223445566777776
Q ss_pred EccCCCeEEEEEe
Q 004785 243 FHPHAAPLLLTAE 255 (730)
Q Consensus 243 FSPdG~~Llatgs 255 (730)
-.-|.. ++.+.+
T Consensus 210 AT~dsq-VAvaTE 221 (671)
T PF15390_consen 210 ATVDSQ-VAVATE 221 (671)
T ss_pred Eeccce-EEEEec
Confidence 655544 444443
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.64 E-value=1 Score=47.65 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785 102 PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (730)
.+.+-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-.. +..-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 3455566799999999755 5555666788888886 588887775432 4577899976 6777776667999999988
Q ss_pred CCCe----E--EEE--ec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC--C-ccccCCeE------EecCCCC
Q 004785 180 STAE----C--IGS--RD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM--R-EETSSPRI------VLRTRRS 237 (730)
Q Consensus 180 ~tg~----~--i~~--l~----h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t--~-~~~~~~~~------l~~h~~~ 237 (730)
.... . ... +. .+..+..++|+|.++.|+++-... ..||.++. . .... ... ....-..
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceecc
Confidence 4321 1 111 12 445689999999988888777544 55666544 1 1100 000 1112346
Q ss_pred eEEEEEccCCCeEEEEE
Q 004785 238 LRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 238 V~sVaFSPdG~~Llatg 254 (730)
+.+++++|....+++-+
T Consensus 173 ~S~l~~~p~t~~lliLS 189 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILS 189 (248)
T ss_dssp --EEEEETTTTEEEEEE
T ss_pred ccceEEcCCCCeEEEEE
Confidence 78999999876665544
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.50 E-value=2 Score=46.88 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=81.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe----cC-CCCc
Q 004785 80 ARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH----GH-RRTP 152 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~----gH-~~~V 152 (730)
.+..+++-...+.|..|+..++.. -.+...+.++..-.++..|+++. .-+.+++.+++..+..+. +. ....
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCC
Confidence 333455666677777777765521 12344445555444555565553 346677777666533332 11 1345
Q ss_pred EEEEEccCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEE
Q 004785 153 WVVRFHPLNPTIIASGSL-----------DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWR 218 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~-----------DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWD 218 (730)
+.+...| ++.+.++... -|.|+..|. .+..++.+. +-..-+.++|||||+.|+.+.. ..|+-|+
T Consensus 114 ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 114 NDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 6788899 7777766433 133555554 344444443 3555688999999999988875 4477777
Q ss_pred cC
Q 004785 219 YN 220 (730)
Q Consensus 219 l~ 220 (730)
+.
T Consensus 192 ~d 193 (307)
T COG3386 192 LD 193 (307)
T ss_pred cC
Confidence 75
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.46 E-value=1.8 Score=45.80 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---CeEEEEE--------ecCCCCcEEEEEccCCCCEEEEEeCCCc
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT---GSCLKVL--------HGHRRTPWVVRFHPLNPTIIASGSLDHE 173 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t---g~~l~~l--------~gH~~~V~sVafSP~dg~lLaSgS~Dgt 173 (730)
.+...+-.++|++.++.|+.+-+..-.+||.+.. ...+... ......+.++.++|..+++++-...+..
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 4566799999999888888887766666666543 2222211 1234568899999988888888889999
Q ss_pred EEEEECCCCeEEEEecCC----------CCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785 174 VRLWNASTAECIGSRDFY----------RPIASIAFHASGELLAVASGHKLYIW 217 (730)
Q Consensus 174 VrLWDl~tg~~i~~l~h~----------~~V~sVafSPdG~~LAsgSdd~I~VW 217 (730)
|..+| .+|+.+..+... .....|+|+++|++.+++--+..++|
T Consensus 195 l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 195 LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 99999 567776654322 25789999999976655533435544
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.38 E-value=2 Score=45.87 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=58.3
Q ss_pred eEEEEECCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCCCC-cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785 110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRT-PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~~~-V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~ 186 (730)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-.... --.++.. +++++.-.=.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 56788866777777777654 6888888888876554322211 1123332 33444445556666667766666666
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004785 187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (730)
Q Consensus 187 ~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t 221 (730)
.+...+.-..++ .||+.|+.+. +++|+++|..+
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 655554445555 3344444333 33466666544
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.36 Score=55.24 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=92.1
Q ss_pred CCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-------EEEEEeCCCcEEEEECCCCeE--EE
Q 004785 117 PDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-------IIASGSLDHEVRLWNASTAEC--IG 186 (730)
Q Consensus 117 PDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-------lLaSgS~DgtVrLWDl~tg~~--i~ 186 (730)
.+.++| .++.....++-.|++.|+.+..++-|.. |.-+.+.| +.+ .-+.|-.|..|.-||.+-... +.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceee
Confidence 344444 4455567788899999999999988877 88888888 322 234467788999999884221 11
Q ss_pred Ee-----cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 187 SR-----DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 187 ~l-----~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.. .......|.+-.-+| ++++|+ ++.|++||- .+.. ....+.+-...|..|..+.||++|++|+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRR--AKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhh--hhhcccccCCceeeEEeeccCcEEEEecc
Confidence 11 123355566665565 566666 666999996 3332 22356667889999999999999999987
No 364
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.65 Score=57.27 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=103.6
Q ss_pred CeEEEEECCCCCEEEE--EeCCCeEEEEECCCCeE-----EEEEecC------CCCcEEEEEccCCCCEEEEEeCCCcEE
Q 004785 109 STIAAAFSPDGKTLAS--THGDHTVKIIDCQTGSC-----LKVLHGH------RRTPWVVRFHPLNPTIIASGSLDHEVR 175 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaS--gS~DgtVrVWDl~tg~~-----l~~l~gH------~~~V~sVafSP~dg~lLaSgS~DgtVr 175 (730)
.+..+..++|+...+. .+++-.|..||+++-.. .+.|+.| .....++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4666677778765443 45556899999965321 1222222 234567899985556677788899998
Q ss_pred EEECCCCe-EEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785 176 LWNASTAE-CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 176 LWDl~tg~-~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~--~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll 251 (730)
+..+..-. .+..+......++++|+|.|+.+++|-.++ +.-|..... ..+..+... ....|.+|.|-....+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~--e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE--ENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC--CCcceeEEEEecceeEEE
Confidence 88776432 233456677889999999999999998544 655544332 121111111 157899999998888777
Q ss_pred EEEeeC----CccCCCcceeEeccCCcccC
Q 004785 252 LTAEVN----DLDSSESSLTLATSPGYWRY 277 (730)
Q Consensus 252 atgsvw----dl~s~~~~~~l~t~sG~~~~ 277 (730)
+-+... +-+..+.........|+.+|
T Consensus 260 vy~n~ts~~~dpd~y~~~~~k~kp~g~~nF 289 (1405)
T KOG3630|consen 260 VYGNVTSETDDPDSYDQKMYKIKPDGSANF 289 (1405)
T ss_pred EecccccCcCCchhhhhccccccCcceeee
Confidence 655533 33333333334445565544
No 365
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.13 E-value=3 Score=44.00 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=60.3
Q ss_pred CcEEEEEccCCCCEEEEEe---CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEE-cCCCccc
Q 004785 151 TPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR-YNMREET 225 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS---~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWD-l~t~~~~ 225 (730)
.+...++++ +++.++... ....++++.. +...........+....|+++|...++..+.. .+++. ...++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999 666555444 3334555544 33333332445788899999988776666433 55553 2333221
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
............|..+.+||||.+++....
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEe
Confidence 100011111128999999999999887764
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.05 E-value=1.4 Score=52.31 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=72.8
Q ss_pred CeEEEEECCCCCEEEEEeCC-C-----------eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785 109 STIAAAFSPDGKTLASTHGD-H-----------TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~D-g-----------tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL 176 (730)
..+.-.|+|||+.|++..+. . .+.+.++..++... ...+.|..++|+| |+..++... ++.|++
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence 37889999999988877543 2 23333333333222 2345799999999 776665544 467777
Q ss_pred ---EECCCCeEEE----Ee--cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec--CCCCeEEEEEcc
Q 004785 177 ---WNASTAECIG----SR--DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR--TRRSLRAVHFHP 245 (730)
Q Consensus 177 ---WDl~tg~~i~----~l--~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~--h~~~V~sVaFSP 245 (730)
-....|+... .+ .....+.++.|..++.+++...+....+|.+........ .+.. ....+.+|+=++
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASP 550 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCC
Confidence 4444554111 12 123346889999999965443333334444433322111 1122 245667777665
No 367
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.86 E-value=2.2 Score=47.50 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=57.1
Q ss_pred CeEEEEECCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004785 109 STIAAAFSPDGKTLASTH-----------GDH-TVKIIDCQT--GS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS-----------~Dg-tVrVWDl~t--g~--~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg 172 (730)
....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....|.........++|.+ ++ ++++ +.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCCe
Confidence 456889999998776642 223 677776443 33 3345544445578899988 66 5554 4443
Q ss_pred cEEEEECCC-----CeEEEE---ecC-----CCCeEEEEEcCCCCEEEEEE
Q 004785 173 EVRLWNAST-----AECIGS---RDF-----YRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 173 tVrLWDl~t-----g~~i~~---l~h-----~~~V~sVafSPdG~~LAsgS 210 (730)
..++.|... ++.... +.. ....+.++|.|||++.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333445432 121111 222 24477899999998655443
No 368
>PRK10115 protease 2; Provisional
Probab=93.25 E-value=4.4 Score=49.06 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=68.7
Q ss_pred CCeEEEEECCCCCEEEEEeC-----CCeEEEEECCCCeEEE-EEecCCCCcEEEEEccCCCCEEEEEeCC-----CcEEE
Q 004785 108 RSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLD-----HEVRL 176 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~-~l~gH~~~V~sVafSP~dg~lLaSgS~D-----gtVrL 176 (730)
-.+..+.|||||++|+.+.+ ...|++.|+.+|+.+. .+.+ .. ..++|.+++..++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 45778899999999987744 3468999999887432 2222 11 4699999444455554322 36888
Q ss_pred EECCCC--eEEEEecC-CCCeE-EEEEcCCCCEEEEEE-C---CeEEEEEcCC
Q 004785 177 WNASTA--ECIGSRDF-YRPIA-SIAFHASGELLAVAS-G---HKLYIWRYNM 221 (730)
Q Consensus 177 WDl~tg--~~i~~l~h-~~~V~-sVafSPdG~~LAsgS-d---d~I~VWDl~t 221 (730)
+++.++ +-...+.. ..... .+..+.|+++++..+ . ..+.+|+...
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 999887 33334432 22233 333444888766555 2 2389998644
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=5.5 Score=42.92 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=102.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECC-CCCEEEEEeCCCe-EEEEECCCCeEEEEEecCCCC--c
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSP-DGKTLASTHGDHT-VKIIDCQTGSCLKVLHGHRRT--P 152 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSP-DG~~LaSgS~Dgt-VrVWDl~tg~~l~~l~gH~~~--V 152 (730)
..|+...++..+++|++..--. -...-..|+|+| ...-++.+-.-|+ ..++|..+.+...++...++. .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy 116 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY 116 (366)
T ss_pred ccCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee
Confidence 3456667778888887642221 122234677888 3455666655444 577888877665554322221 1
Q ss_pred EEEEEccCCCCEEEEEeCC-----CcEEEEECCCC-eEEEEec-CCCCeEEEEEcCCCCEEEEEECC-------------
Q 004785 153 WVVRFHPLNPTIIASGSLD-----HEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGH------------- 212 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~D-----gtVrLWDl~tg-~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd------------- 212 (730)
-.-.||| ++.+|+..-.| |.|-|||.+.+ +.+..+. |.-.-..+.|.+||+.|+++.++
T Consensus 117 GHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN 195 (366)
T COG3490 117 GHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN 195 (366)
T ss_pred cccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence 1246899 88887775544 67999999843 2233333 45566789999999999887531
Q ss_pred ------eEEEEEcCCCccccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004785 213 ------KLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 213 ------~I~VWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.+.+.|..+++.+. ...+. .+.-.|+.++..+||+ +.+.+.
T Consensus 196 ldsMePSlvlld~atG~lie-kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQ 244 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIE-KHTLPASLRQLSIRHLDIGRDGT-VWFGCQ 244 (366)
T ss_pred hhhcCccEEEEeccccchhh-hccCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence 13444544554433 12222 3456789999999998 444443
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.10 E-value=6.4 Score=42.95 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-C
Q 004785 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-T 181 (730)
Q Consensus 103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-t 181 (730)
...-.+.+..+.-++||+++++++.-....-||--...-...-+.-...|..|.|.| ++.+.+.+ ..+.|++=|.. .
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCC
Confidence 344567899999999999999887766667787432211222233457899999999 77776654 88888888722 2
Q ss_pred CeEEEE--ec---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 182 AECIGS--RD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 182 g~~i~~--l~---h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
.+.... .. ..-.+..++|.++++..++|+++.+. ...+.++.-........-...++.|.|..+.+-++.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 222211 11 22347899999999988888777544 334444432211111223556888888776554443
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.84 Score=52.36 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCC--EE-----EEEeCCCeEEEEECCC-Ce-EEEEEec
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGK--TL-----ASTHGDHTVKIIDCQT-GS-CLKVLHG 147 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~--~L-----aSgS~DgtVrVWDl~t-g~-~l~~l~g 147 (730)
.-.+.++.+...++-.|++++++. -|.. |+-+.+.|+.+ .| +.|-.|..|.-||.+- ++ .+..-++
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 344556666677888888877432 2333 77788888654 23 3455688899999763 22 2322233
Q ss_pred CC----CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785 148 HR----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (730)
Q Consensus 148 H~----~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~ 220 (730)
|. ....|.+-. ...+++.||.+|.|++||- .+..-++ + +...+|..|..+.||++|+..++.-+.+.|+.
T Consensus 425 kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 32 224444443 5678999999999999997 4443332 3 36789999999999999998888777777664
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.99 E-value=1.4 Score=53.58 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=85.4
Q ss_pred eCCCeEEEEeCCCCCC----CCCCC-CeEEEEECC-----CCCEEEEEeCCCeEEEEECCCCe--EEE-EEe--cCCCCc
Q 004785 88 VEAESLHHLRPKYCPL----SPPPR-STIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGS--CLK-VLH--GHRRTP 152 (730)
Q Consensus 88 s~DgsIrlWd~~t~~L----~gH~~-~Vt~lafSP-----DG~~LaSgS~DgtVrVWDl~tg~--~l~-~l~--gH~~~V 152 (730)
.....|...|+.++++ ..|.. .|..++-.. +...-+.|-.+..+..||.+-.. .+. ..+ ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 3456778888887753 23332 254444321 12345667788899999987532 221 111 123446
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE-EEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i-~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~ 220 (730)
.|++-. ...+||.|+.+|.||+||- .|+.- ..+ +...+|..|..+.||++|+..++.-|.|++..
T Consensus 581 s~~aTt--~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATT--EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred eEEEec--CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 666665 4668899999999999994 34322 223 35789999999999999998888888888863
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.90 E-value=13 Score=42.22 Aligned_cols=164 Identities=12% Similarity=0.095 Sum_probs=82.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC---C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEE
Q 004785 77 GRDARRGLASWVEAESLHHLRPKYCP---L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVL 145 (730)
Q Consensus 77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~---L-------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l 145 (730)
.......|+...+||+++++|..... + .-....+....+..+|-.+.+ .++.+.+.+-.... ..+.+
T Consensus 87 ~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~ 164 (410)
T PF04841_consen 87 GWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRL 164 (410)
T ss_pred EECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhcc
Confidence 33456788889999999999974221 0 011112222344445533333 34444443321111 11111
Q ss_pred ecCCCC---------cEE-EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeE
Q 004785 146 HGHRRT---------PWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKL 214 (730)
Q Consensus 146 ~gH~~~---------V~s-VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I 214 (730)
..-... ... ..++. +....+....++.+.+.+-...+. +...+++..++.||+|++||.-.+ +.+
T Consensus 165 ~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l 240 (410)
T PF04841_consen 165 PEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNL 240 (410)
T ss_pred ccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCE
Confidence 100000 000 12222 333333334444455333222111 333568999999999999998886 448
Q ss_pred EEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004785 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 215 ~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~ 248 (730)
.|...+-.+... ..-.........+.|..+..
T Consensus 241 ~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 241 WVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEECcccceeE--EeecCcCCCCcEEEEECCCc
Confidence 888765554322 11222345677888988765
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.89 E-value=0.039 Score=63.84 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=87.6
Q ss_pred CCCeEEEEeCCCC--------CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEcc
Q 004785 89 EAESLHHLRPKYC--------PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159 (730)
Q Consensus 89 ~DgsIrlWd~~t~--------~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP 159 (730)
.|..+.+||..+. .+.+ ......+++|-.|.+++.+|...+.++++|++.... ..-.-.+..+..+.+.|
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDP 205 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecC
Confidence 3567999998765 1222 344566889998899999999999999999873321 11111234455677888
Q ss_pred CCCCEEEEEeCCCcEEEEE-CCCCe-EEEEecC-----CCCeEEEEEcCCCC-EEEEEECC--eEEEEEcCC
Q 004785 160 LNPTIIASGSLDHEVRLWN-ASTAE-CIGSRDF-----YRPIASIAFHASGE-LLAVASGH--KLYIWRYNM 221 (730)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWD-l~tg~-~i~~l~h-----~~~V~sVafSPdG~-~LAsgSdd--~I~VWDl~t 221 (730)
...+++++-. |+.|-+|| .++-+ ++..+.+ ...+..++|+|... .|++.+.+ .|+++|+..
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7778887755 99999999 33322 2222222 23589999999665 56666643 399998853
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.83 E-value=13 Score=42.47 Aligned_cols=174 Identities=15% Similarity=0.177 Sum_probs=82.4
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCCCC--------CC---C----CCCeEEEEECCCCCEEEEEeC------CCeEEEEECC
Q 004785 80 ARRGLAS-WVEAESLHHLRPKYCPL--------SP---P----PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ 137 (730)
Q Consensus 80 ~g~~L~S-gs~DgsIrlWd~~t~~L--------~g---H----~~~Vt~lafSPDG~~LaSgS~------DgtVrVWDl~ 137 (730)
.++.|+. +.....|.+.|..+... .. + -..-..+-.-|+|..++++=. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 4555554 44788899999875411 10 0 011122333468988888732 2568888988
Q ss_pred CCeEEEEEecCC---CCcEEEEEccCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEecCCC--
Q 004785 138 TGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGS--------------------LDHEVRLWNASTAECIGSRDFYR-- 192 (730)
Q Consensus 138 tg~~l~~l~gH~---~~V~sVafSP~dg~lLaSgS--------------------~DgtVrLWDl~tg~~i~~l~h~~-- 192 (730)
+.+.+....... ..-+.+-|.| ..+.++|.. ...++.+||+.+.+.++.+....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777765432 2345688899 888888854 23579999999999999987542
Q ss_pred -CeEEEEEc--CCCCEEEEEE--CCeEEEEEc-CCCccccCCeEEec-----------C-------CCCeEEEEEccCCC
Q 004785 193 -PIASIAFH--ASGELLAVAS--GHKLYIWRY-NMREETSSPRIVLR-----------T-------RRSLRAVHFHPHAA 248 (730)
Q Consensus 193 -~V~sVafS--PdG~~LAsgS--dd~I~VWDl-~t~~~~~~~~~l~~-----------h-------~~~V~sVaFSPdG~ 248 (730)
-...|.|. |+..+=++++ ...|..|-- ..++-..+...... . ..-|+.+..|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34566664 5566655555 444544433 33321110000000 0 24578999999999
Q ss_pred eEEEEE
Q 004785 249 PLLLTA 254 (730)
Q Consensus 249 ~Llatg 254 (730)
+|.+++
T Consensus 325 fLYvs~ 330 (461)
T PF05694_consen 325 FLYVSN 330 (461)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 888775
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=0.48 Score=58.10 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785 81 RRGLASWVEAESLHHLRPKYC--PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~--~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV 155 (730)
...++.++..|-|-..|.... .+ ..-.++|++++|+.||++++.|-.+|.|.+||+..++.++.+..|..+...+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 345666666666665555432 11 1235689999999999999999999999999999999999998887766554
Q ss_pred E---EccCCCCEEEEEeCCCcEEEEEC
Q 004785 156 R---FHPLNPTIIASGSLDHEVRLWNA 179 (730)
Q Consensus 156 a---fSP~dg~lLaSgS~DgtVrLWDl 179 (730)
- +.. ++..++++..-|. +|.+
T Consensus 179 i~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 3 333 3446777766665 5544
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.26 E-value=0.42 Score=37.56 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~ 141 (730)
...|.+++|+|...+||.+..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 446999999999999999999999999998 5554
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.20 E-value=3.2 Score=44.65 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=113.4
Q ss_pred CCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCC
Q 004785 31 RNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSP 105 (730)
Q Consensus 31 rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~g 105 (730)
|...|..+|.....++.........++++++-. ++.+ +.++.+..++- -...|.|.+||...+ .+..
T Consensus 88 rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGv--fs~d-G~~LYATEndf-----d~~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 88 RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGV--FSPD-GRLLYATENDF-----DPNRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred cCCceEEEECCCCCcCcEEEecccCceeecccc--cCCC-CcEEEeecCCC-----CCCCceEEEEecccccceeccccc
Confidence 677888999888777766555555666666644 3322 34555542221 234577999998743 5777
Q ss_pred CCCCeEEEEECCCCCEEEEEeC------C------------CeEEEEECCCCeEEEEE--e--cCCCCcEEEEEccCCCC
Q 004785 106 PPRSTIAAAFSPDGKTLASTHG------D------------HTVKIIDCQTGSCLKVL--H--GHRRTPWVVRFHPLNPT 163 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~------D------------gtVrVWDl~tg~~l~~l--~--gH~~~V~sVafSP~dg~ 163 (730)
|.-.-..+.|.+||+.|+.+.. | -++.+.|..+|+.+.+. . -+.-.|..++..+ ++.
T Consensus 160 ~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgt 238 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGT 238 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCc
Confidence 8878889999999999988743 1 12334454555544322 1 2334566777776 666
Q ss_pred EEEEEeCCCc-----EEEEECCCCeEEEEec--------CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc
Q 004785 164 IIASGSLDHE-----VRLWNASTAECIGSRD--------FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS 226 (730)
Q Consensus 164 lLaSgS~Dgt-----VrLWDl~tg~~i~~l~--------h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~ 226 (730)
+++-+-.-|. -.+=-...++.+..++ ....|-+|+.+-+..+++..+ ++...+||..++..+.
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 5555432221 1111122344444332 335678889887777777766 3448999999997644
No 379
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.12 E-value=2.7 Score=45.56 Aligned_cols=129 Identities=9% Similarity=0.102 Sum_probs=75.2
Q ss_pred CCEEEEEeC----------CCeEEEEECCCC----eEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785 119 GKTLASTHG----------DHTVKIIDCQTG----SCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (730)
Q Consensus 119 G~~LaSgS~----------DgtVrVWDl~tg----~~l~~l--~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg 182 (730)
..+|+.|.. .|.|.++++... ..++.+ ....+.|++++-- ++.++++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCc
Confidence 456777654 288999999884 233322 3456888888765 34444433 478999999887
Q ss_pred e-EEEEecC--CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785 183 E-CIGSRDF--YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 183 ~-~i~~l~h--~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~-~~~~~~l~~h~~~V~sVaFSPdG~~Llatg 254 (730)
+ ....-.+ ...+.++.. .++++++|. .+++.++.++.... .. .........+++++.|-+|++.++++.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred ccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCcEEEEEc
Confidence 7 5544333 335555554 466888887 45577775544221 11 111122355688999987776555544
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.02 E-value=2.6 Score=50.23 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCcEEEEEc--cCCCCEEEEEeCCCcEEEEECC-----
Q 004785 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPWVVRFH--PLNPTIIASGSLDHEVRLWNAS----- 180 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~~~V~sVafS--P~dg~lLaSgS~DgtVrLWDl~----- 180 (730)
..-+.-|.-++.-++-+....+.|||...+... ..| ...+.|..+.|. | +++.+++.+..+.|.++--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444444444444445568999999887633 233 346779999996 5 77888888899999988432
Q ss_pred CC----eEEEEe---cCC-CCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004785 181 TA----ECIGSR---DFY-RPIASIAFHASGELLAVASGHKLYIWRYNM 221 (730)
Q Consensus 181 tg----~~i~~l---~h~-~~V~sVafSPdG~~LAsgSdd~I~VWDl~t 221 (730)
.. ..++.+ .+. .+|.+..|-++|. |++|+++.+.|+|-..
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECCCc
Confidence 11 223332 233 6899999999886 4556677888887543
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.01 E-value=2.9 Score=48.87 Aligned_cols=138 Identities=12% Similarity=0.185 Sum_probs=84.1
Q ss_pred CCeEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC---CCEEEEEeCCCcEEEEECCC
Q 004785 108 RSTIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN---PTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d---g~lLaSgS~DgtVrLWDl~t 181 (730)
.+|..++|. ||+.++-.. ..|.+++=| .+.+..| ..|..+.|.|-. .--++.......|.+|.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 468899997 777665442 133333322 2334444 348889999831 22344456677899999862
Q ss_pred -----CeEEEE--ecCCC----CeEEEEEcCCCCEEEEEECCeE-EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004785 182 -----AECIGS--RDFYR----PIASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (730)
Q Consensus 182 -----g~~i~~--l~h~~----~V~sVafSPdG~~LAsgSdd~I-~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~ 249 (730)
++.+.. .+... --..+.|||....|++-....+ .+++++.... ....-....+.|.+.+|.+||++
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCE
Confidence 222211 11111 2246789999999999886554 4455544332 11233456788999999999999
Q ss_pred EEEEEe
Q 004785 250 LLLTAE 255 (730)
Q Consensus 250 Llatgs 255 (730)
|+.+.+
T Consensus 170 LVVAvG 175 (671)
T PF15390_consen 170 LVVAVG 175 (671)
T ss_pred EEEEeC
Confidence 887654
No 382
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.48 E-value=6 Score=42.11 Aligned_cols=101 Identities=13% Similarity=-0.023 Sum_probs=69.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785 80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~V-t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s 154 (730)
-+..++.|...+.+...+.+++. +.. .+.| ......+++.+|..|+.|++.+..|..+..++...+.-.+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 35668889999999999988872 111 1112 12344668999999999999999999999999887765554455
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTA 182 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg 182 (730)
-...| ....++.+...|.|.--..+..
T Consensus 141 P~i~~-g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 141 PVIAP-GDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceecC-CCceEEEEeccceEEEEccCCC
Confidence 66677 4455555555565555454444
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.37 E-value=5.5 Score=46.13 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=64.7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE------------------eCCCcEEEEECCCC
Q 004785 121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG------------------SLDHEVRLWNASTA 182 (730)
Q Consensus 121 ~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg------------------S~DgtVrLWDl~tg 182 (730)
.++.++.+|.+...|.++|+.+.....- ...++.+| +.++.+ ..++.|.-.|+.+|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 5778888999999999999988765421 11233333 222221 23678999999999
Q ss_pred eEEEEecCC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 183 ECIGSRDFY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 183 ~~i~~l~h~---------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
+.+...... .....-...-.+..|++++ ++.|+.+|.++++.+-
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 988876543 1111111112456777776 5669999999998754
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.34 E-value=3.9 Score=38.09 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=49.6
Q ss_pred cEEEEEcc---CCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004785 152 PWVVRFHP---LNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRY 219 (730)
Q Consensus 152 V~sVafSP---~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl 219 (730)
|+++++.. ++.+.|+.|+.|..|++|+- .+.+..+.....|.+++-...+++.+.-.+++|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 45555543 34578999999999999975 46777777888899998887766655555777888865
No 385
>PRK13684 Ycf48-like protein; Provisional
Probab=91.25 E-value=24 Score=38.90 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=80.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEE-EECCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKI-IDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrV-WDl~tg~~l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 184 (730)
.+.+.++.+.+++.+++++ ..|.+.. +| ..++....+ ..-...++.+.+.+ ++.+++.+ ..|.+++=....|+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCc
Confidence 5578999999998777665 4455543 22 223323222 23345788999998 77776654 456665433444443
Q ss_pred EEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 185 IGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 185 i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
..... ....+.++.|.++++.++++.++.|. ...+.++.-........-....+.+.|..+++.+++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 33222 12357889999998887777666544 334443321110000122346778888877765443
No 386
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.03 E-value=5.1 Score=46.39 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC----CCCC------CeE--EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLS----PPPR------STI--AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~------~Vt--~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
+..++.+..++.|.-+|.+++++. .... .+. .+... ++..++.++.|+.|+-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 456777778899999999887422 1111 010 11111 2267888889999999999999998777543
Q ss_pred CCC-----c-EEEEEccCCCCEEEEEe---------CCCcEEEEECCCCeEEEEec
Q 004785 149 RRT-----P-WVVRFHPLNPTIIASGS---------LDHEVRLWNASTAECIGSRD 189 (730)
Q Consensus 149 ~~~-----V-~sVafSP~dg~lLaSgS---------~DgtVrLWDl~tg~~i~~l~ 189 (730)
... + ....+. + .+++.++ .++.|..+|..+|+.+..+.
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 221 1 112222 2 3444443 36789999999999888764
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.02 E-value=1.3 Score=46.15 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=67.4
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785 76 AGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (730)
Q Consensus 76 a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafS-PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (730)
........++.|..++.|.+|..... .+..-...|.++--. .++.+..+++.|+.|+.|++.-++.+...-.|+
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 33446678999999999999987521 111222233333222 356688899999999999999888777776676
Q ss_pred -CCcEEEEEccCCCCEEEEE--eCCCcEEEEECCC
Q 004785 150 -RTPWVVRFHPLNPTIIASG--SLDHEVRLWNAST 181 (730)
Q Consensus 150 -~~V~sVafSP~dg~lLaSg--S~DgtVrLWDl~t 181 (730)
.++....... .+.++..+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 4444444444 45555555 6666666666653
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.96 E-value=4.6 Score=48.18 Aligned_cols=104 Identities=12% Similarity=0.170 Sum_probs=66.4
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEc--CCCC-EEEEEECCeEEEEEc-----C
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFH--ASGE-LLAVASGHKLYIWRY-----N 220 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafS--PdG~-~LAsgSdd~I~VWDl-----~ 220 (730)
.+.-+.-+. -++..+.-+...++.|||.+.+..... +...+.|..+.|. |||+ +|++|-.+.|.+|-- .
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555 455555555566799999998876554 3457899999985 6777 566666787777642 2
Q ss_pred CCccccC---CeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004785 221 MREETSS---PRIVLRT-RRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 221 t~~~~~~---~~~l~~h-~~~V~sVaFSPdG~~Llatgs 255 (730)
....... ...+..+ ..+|.+..|.++|..++++++
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 2111000 1112233 357899999999997777776
No 389
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.70 E-value=15 Score=40.15 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe------EEEEECCC--C--eEE-----EEEecCCC--------CcEEEEEccCCCC
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHT------VKIIDCQT--G--SCL-----KVLHGHRR--------TPWVVRFHPLNPT 163 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~Dgt------VrVWDl~t--g--~~l-----~~l~gH~~--------~V~sVafSP~dg~ 163 (730)
-+.+..+.+.+++..++.-++++. +..+++.. + ..+ ..++.-.+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 456778888865566666677776 55555433 1 111 11222222 234788855 888
Q ss_pred EEEEEeCC------CcEEEEECCCCeEEEEe----------------cCCCCeEEEEEcCCCCEEEEEE------CC--e
Q 004785 164 IIASGSLD------HEVRLWNASTAECIGSR----------------DFYRPIASIAFHASGELLAVAS------GH--K 213 (730)
Q Consensus 164 lLaSgS~D------gtVrLWDl~tg~~i~~l----------------~h~~~V~sVafSPdG~~LAsgS------dd--~ 213 (730)
++++.-.+ ..|+.+|.. |+.+..+ ..+....+++++|||+.|+++. ++ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 888888876 5543332 2345789999999999666654 11 1
Q ss_pred -------EEEEEcCCCc---cccCCeEEec------CCCCeEEEEEccCCCeEEE
Q 004785 214 -------LYIWRYNMRE---ETSSPRIVLR------TRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 214 -------I~VWDl~t~~---~~~~~~~l~~------h~~~V~sVaFSPdG~~Lla 252 (730)
++|+.+.... .......... ....|..+.+-++++.++.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4555554332 1111111111 3567889999999996654
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.27 E-value=0.86 Score=35.80 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 184 (730)
...|..++|+| ..++++.+..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 35689999999 9999999999999999999 5554
No 391
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.27 E-value=0.64 Score=55.63 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785 89 EAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (730)
Q Consensus 89 ~DgsIrlWd~~t~~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL 165 (730)
..|+|.+|-- ++.- ..-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|++ +|+.+
T Consensus 39 r~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l 116 (1416)
T KOG3617|consen 39 RGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVL 116 (1416)
T ss_pred CCceEEEEec-CCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeE
Confidence 4566776643 2311 11223367899999988999998899999999888777667778999999999999 99999
Q ss_pred EEEeCCCcEEEEECCC
Q 004785 166 ASGSLDHEVRLWNAST 181 (730)
Q Consensus 166 aSgS~DgtVrLWDl~t 181 (730)
+++..-|.|.+|....
T Consensus 117 ~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEcCCCceeEEEEeee
Confidence 9999999999998763
No 392
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.24 E-value=2.2 Score=44.23 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785 161 NPTIIASGSLDHEVRLWNASTAECIGSR---------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l---------------~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~ 223 (730)
.+++++....+|.+++||+.+++.+..- .....|..+.++.+|.-|++-+++..+.||.+.+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 6788999999999999999998875432 23457888899999998888888889999887664
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.09 E-value=12 Score=41.65 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=57.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----CeEE---EEEec----CCCCcEEEEEccCCCCEEEEEeCC---
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCL---KVLHG----HRRTPWVVRFHPLNPTIIASGSLD--- 171 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l---~~l~g----H~~~V~sVafSP~dg~lLaSgS~D--- 171 (730)
....+.++|.++| + +.+..+...++.|... ++.. ..+.. +......++|.| ++.+.++-+..
T Consensus 71 l~~p~Gi~~~~~G-l-yV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~ 147 (367)
T TIGR02604 71 LSMVTGLAVAVGG-V-YVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLAS 147 (367)
T ss_pred CCCccceeEecCC-E-EEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCc
Confidence 3346789999888 4 4444443333445432 1211 22322 234477899999 78877764421
Q ss_pred ----------------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785 172 ----------------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 172 ----------------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS 210 (730)
+.|..+|..+++.......-.....++|+|+|+++++-.
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345666665544332222234457899999998876544
No 394
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.85 E-value=29 Score=38.50 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=86.4
Q ss_pred CCEEEEEeCCCeEEEEeCCC-CC--------CCCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecC
Q 004785 81 RRGLASWVEAESLHHLRPKY-CP--------LSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGH 148 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t-~~--------L~gH~~~V-t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH 148 (730)
...+.+.+.||++....+.. ++ +..-...+ ..-+++.++..++--+.+|.|+--|+..... ...+.--
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 34566777788777766652 21 21112222 2334444555566677889999888865532 2222211
Q ss_pred C----------CCcEEEEEccCCCCEEEEE--eCCC-------cEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004785 149 R----------RTPWVVRFHPLNPTIIASG--SLDH-------EVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV 208 (730)
Q Consensus 149 ~----------~~V~sVafSP~dg~lLaSg--S~Dg-------tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAs 208 (730)
+ +.-.-+++++..+.+++.- +.++ .|.++|+.+++.+..+.....+.+|..+.|.+ +|+.
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 0 1233477877333433331 1121 48888999999999988777888999999887 6665
Q ss_pred EE--CCeEEEEEcCCCcccc
Q 004785 209 AS--GHKLYIWRYNMREETS 226 (730)
Q Consensus 209 gS--dd~I~VWDl~t~~~~~ 226 (730)
.+ ++.|.+||..+++.+.
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EETTTTEEEEEETTT--EEE
T ss_pred EcCCCCeEEEEeCcCCcEEe
Confidence 55 3459999999998654
No 395
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=88.51 E-value=9 Score=43.36 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=51.6
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------CCCCeEEEEEcC-----CC---C
Q 004785 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHA-----SG---E 204 (730)
Q Consensus 142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---------h~~~V~sVafSP-----dG---~ 204 (730)
...+....++|++++.+ +-.+++.|..+|.+.|.|++....+.... ....+.++.|.. |+ -
T Consensus 79 ~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred hhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 34445568899999997 57899999999999999998877766521 223677888873 33 3
Q ss_pred EEEEEEC-CeEEEEEcC
Q 004785 205 LLAVASG-HKLYIWRYN 220 (730)
Q Consensus 205 ~LAsgSd-d~I~VWDl~ 220 (730)
.|++|++ +.+.+|.+-
T Consensus 157 ~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEe
Confidence 6778875 448888764
No 396
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=88.35 E-value=65 Score=38.64 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCC----eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE------eCC
Q 004785 102 PLSPPPRSTIAAAFSPDGKTLASTHGDH----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG------SLD 171 (730)
Q Consensus 102 ~L~gH~~~Vt~lafSPDG~~LaSgS~Dg----tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg------S~D 171 (730)
....+...+..+.|+|||+.++..+.++ .+++.+.. + .+..+...+....|+| .++.++.. ..|
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~~~ 127 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSP-DGDRIAFLTAEGASKRD 127 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCC-CCCeEEEEecccccccC
Confidence 3455677788999999999999887432 24444444 3 3344556677889999 55554441 112
Q ss_pred Cc-------EEEEECCCC-eEE------------EEecCCCCeEEEEEcCCCCEEEEEE--CC--e----EEEEEcCCCc
Q 004785 172 HE-------VRLWNASTA-ECI------------GSRDFYRPIASIAFHASGELLAVAS--GH--K----LYIWRYNMRE 223 (730)
Q Consensus 172 gt-------VrLWDl~tg-~~i------------~~l~h~~~V~sVafSPdG~~LAsgS--dd--~----I~VWDl~t~~ 223 (730)
+. +.+|....+ +.. ........+....++++++.++... ++ . ..++...++.
T Consensus 128 ~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (620)
T COG1506 128 GGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE 207 (620)
T ss_pred CceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc
Confidence 22 334443333 211 1112334566677777777776665 21 1 3344332222
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
..........+..+.|.++|+.++..+.
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 208 ----LESLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred ----eEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence 2245555667899999999996665443
No 397
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.29 E-value=17 Score=42.67 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=36.6
Q ss_pred CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
+.|.-||+.+|+.+.......+...-...-.|.+++.++ ++.++.+|.++++.+-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 458888999998888766443322111222455666666 5569999999998754
No 398
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.20 E-value=16 Score=42.92 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=48.4
Q ss_pred CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEE--EEEcCCCC
Q 004785 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE 204 (730)
Q Consensus 129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~s--VafSPdG~ 204 (730)
+.|.-+|+.+|+.+-..+......... ..- .+.+++.++.||.++.+|.++|+.+..+.....+.+ +.|.-+|+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~ 516 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK 516 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence 457778888888776665322212222 111 456777888899999999999999988765544332 33445666
No 399
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.07 E-value=31 Score=39.89 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=59.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE--EEEE----e-cCCCCcEEEEEccCC---C---CEEEEEeC----
Q 004785 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL----H-GHRRTPWVVRFHPLN---P---TIIASGSL---- 170 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l----~-gH~~~V~sVafSP~d---g---~lLaSgS~---- 170 (730)
..-..|+|.|||++|++--..|.|++++-.++.. +..+ . .-.+....|+++|+- . .++++-+.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 3467899999998877765569999998655432 2111 1 124557899999831 1 23333211
Q ss_pred -----CCcEEEEECCCC-------eEEEE-ec--CCCCeEEEEEcCCCCEEEEEECC
Q 004785 171 -----DHEVRLWNASTA-------ECIGS-RD--FYRPIASIAFHASGELLAVASGH 212 (730)
Q Consensus 171 -----DgtVrLWDl~tg-------~~i~~-l~--h~~~V~sVafSPdG~~LAsgSdd 212 (730)
...|.-|.+... +.+.. +. ..+.-..+.|.|||++.++.+|.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 233555554321 11111 11 11234578899999866655543
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.79 E-value=10 Score=40.01 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=69.3
Q ss_pred eEEEEECCCCCEEEEE-eCCCeEEEEE--CCCCe-----EEEEEec----CCCCcEEEEEccCCCCEEEEEeCCCcEEEE
Q 004785 110 TIAAAFSPDGKTLAST-HGDHTVKIID--CQTGS-----CLKVLHG----HRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177 (730)
Q Consensus 110 Vt~lafSPDG~~LaSg-S~DgtVrVWD--l~tg~-----~l~~l~g----H~~~V~sVafSP~dg~lLaSgS~DgtVrLW 177 (730)
-+.++|+.|.+.++.. +.+.+|.-|| +.+|. .+..++. ..-....+++.. ++++++++-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 3578999887776554 5688898888 66663 2333332 111233466666 78899999999999999
Q ss_pred ECCCCeEEEEec-CCCCeEEEEEcC-CCCEEEEEE
Q 004785 178 NASTAECIGSRD-FYRPIASIAFHA-SGELLAVAS 210 (730)
Q Consensus 178 Dl~tg~~i~~l~-h~~~V~sVafSP-dG~~LAsgS 210 (730)
|..+|+.+..+. ....|++++|-- +-..|++..
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 999999988876 356899999953 233555444
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=1.7 Score=53.65 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=69.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeE
Q 004785 118 DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA 195 (730)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~ 195 (730)
.+..++.|+..|.|...|....- ....=+.-.++|++++|+. ++.+++.|-.+|-|.+||...++..+.+. +..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 46678999998999888875431 1111123457899999998 99999999999999999999988887754 444433
Q ss_pred ---EEEEcCCCCEEEEEECCeEEEEEc
Q 004785 196 ---SIAFHASGELLAVASGHKLYIWRY 219 (730)
Q Consensus 196 ---sVafSPdG~~LAsgSdd~I~VWDl 219 (730)
-+.+..++..+.++..++. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs-f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS-FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc-eEEE
Confidence 3444555555666553332 5544
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.70 E-value=1.6 Score=45.43 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=58.3
Q ss_pred CCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CC-CCeE
Q 004785 119 GKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY-RPIA 195 (730)
Q Consensus 119 G~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~-~~V~ 195 (730)
+..++.|+.+|.|++|+..-. .....+..-...|.++--.-+++.+..+++.|+.|+.|++.-++.+.... |. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 467889999999999987521 11111111112233222222245588899999999999998877766654 33 3333
Q ss_pred EEEEcCCCCEEEEE--E-CCeEEEEEcCC
Q 004785 196 SIAFHASGELLAVA--S-GHKLYIWRYNM 221 (730)
Q Consensus 196 sVafSPdG~~LAsg--S-dd~I~VWDl~t 221 (730)
....+-.+++|+.+ | +..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 33334444444444 2 22255555543
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.32 E-value=12 Score=46.08 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=71.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC--------cEEEEEcc---------------CCCCEEEEEeCCCcEE
Q 004785 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--------PWVVRFHP---------------LNPTIIASGSLDHEVR 175 (730)
Q Consensus 119 G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~--------V~sVafSP---------------~dg~lLaSgS~DgtVr 175 (730)
+..|+.++.++.|.-.|.++|+.+-.+.-.... ...+++.. .....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988877533211 12233321 0234777888999999
Q ss_pred EEECCCCeEEEEecCCCCeE-------------EEEEcC--CCCEEEEEE-----------CCeEEEEEcCCCcccc
Q 004785 176 LWNASTAECIGSRDFYRPIA-------------SIAFHA--SGELLAVAS-----------GHKLYIWRYNMREETS 226 (730)
Q Consensus 176 LWDl~tg~~i~~l~h~~~V~-------------sVafSP--dG~~LAsgS-----------dd~I~VWDl~t~~~~~ 226 (730)
-.|.++|+.+..+..++.|. .+.-.| .+..+++|+ ++.|+-+|.++++..-
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999999988776544331 111222 134555553 2349999999998643
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.51 E-value=10 Score=43.27 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=74.3
Q ss_pred CeEEEEECCCCCEEEEEeC--------------------CCeEEEEECCCCeEEEEEecCC--CCcEEEEEccC-CCC-E
Q 004785 109 STIAAAFSPDGKTLASTHG--------------------DHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFHPL-NPT-I 164 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~--------------------DgtVrVWDl~tg~~l~~l~gH~--~~V~sVafSP~-dg~-l 164 (730)
.-+..-|.|..+.++|... ..++.+||+.+.+.++++.--. ..+..|+|..+ +.. =
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 4567777887777777643 4689999999999999886332 23556777541 233 3
Q ss_pred EEEEeCCCcEEEEEC-CCCeEE----EEecC------------------CCCeEEEEEcCCCCEEEEEE--CCeEEEEEc
Q 004785 165 IASGSLDHEVRLWNA-STAECI----GSRDF------------------YRPIASIAFHASGELLAVAS--GHKLYIWRY 219 (730)
Q Consensus 165 LaSgS~DgtVrLWDl-~tg~~i----~~l~h------------------~~~V~sVafSPdG~~LAsgS--dd~I~VWDl 219 (730)
++.+-...+|.+|-- ..++-. ..+.. ..-|+.|..|.|.++|++++ .+.|+-||+
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 344444555655533 344321 11111 23478999999999999999 456999999
Q ss_pred CCCccccCC-eEEec---------------CCCCeEEEEEccCCCeEEEEEe
Q 004785 220 NMREETSSP-RIVLR---------------TRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 220 ~t~~~~~~~-~~l~~---------------h~~~V~sVaFSPdG~~Llatgs 255 (730)
......... ....+ -.....-|..|-||+++..|.+
T Consensus 342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 876432200 01111 1223477889999999999887
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.39 E-value=45 Score=42.12 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=80.1
Q ss_pred EEeCCCeEEEEeCCCC---------CCC------CCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE-EEEEecC
Q 004785 86 SWVEAESLHHLRPKYC---------PLS------PPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHGH 148 (730)
Q Consensus 86 Sgs~DgsIrlWd~~t~---------~L~------gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH 148 (730)
.-.++..|..||++.- .|. .......++.|+|.- ...+....|+.|++..+..-.. +..+ .-
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~ 197 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PV 197 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cc
Confidence 3344557888998631 122 223446788999843 3456667788888876643221 2222 23
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEEE
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgS 210 (730)
...+++++|+| .+..++.|-..|++.-|-.. .+....+. ....|.+|+|-..-.+|++-+
T Consensus 198 t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 198 TNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 45688999999 99999999999998888653 33333321 357899999988877777654
No 406
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.39 E-value=27 Score=39.68 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCcEEEEEcc
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHP 159 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~~~V~sVafSP 159 (730)
+...+....++.+.+.+.....-....+.+..|++||+|++||.-..+|.+.|.+..-.+.+..+... ......+.|.-
T Consensus 190 ~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 190 RVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred cceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 34444555666776555432211223468999999999999999999999999987656666555443 34567788865
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.97 E-value=9.6 Score=43.96 Aligned_cols=136 Identities=12% Similarity=0.114 Sum_probs=88.6
Q ss_pred ECCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC------CCEEEEEeCCCcEEEEECCC-CeEEE
Q 004785 115 FSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN------PTIIASGSLDHEVRLWNAST-AECIG 186 (730)
Q Consensus 115 fSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d------g~lLaSgS~DgtVrLWDl~t-g~~i~ 186 (730)
...|..+|+. |.....++-.|++.|+.+..+..|... .|.|.|.. ...-+.|-.|..|.-.|.+- |..+.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 3345555554 444567888899999999999888764 57888831 12334466676777777764 44444
Q ss_pred EecCCCCeEEEEEcC----CCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 187 SRDFYRPIASIAFHA----SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 187 ~l~h~~~V~sVafSP----dG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.......+..-.|+. ..-++|+++.++ |++||--.... ...+.+-...|..+..+.+|++++++|.
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeec
Confidence 444444444334443 234788888655 99999533221 2245556778999999999999999997
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.41 E-value=5 Score=45.68 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=59.6
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE-EEEccCCC-----------------CEEE
Q 004785 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNP-----------------TIIA 166 (730)
Q Consensus 105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s-VafSP~dg-----------------~lLa 166 (730)
.....+.++..+|++++.|+..+-|.|.|+|+.++..++.+||.++.=.. +....... -+++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 44566889999999998888777799999999999999999887653211 11111011 1334
Q ss_pred EEeCCCcEEEEECCCCeEEEEec
Q 004785 167 SGSLDHEVRLWNASTAECIGSRD 189 (730)
Q Consensus 167 SgS~DgtVrLWDl~tg~~i~~l~ 189 (730)
-+-.-|.|-||++++|..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 46677888888888887766543
No 409
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.36 E-value=5.1 Score=44.28 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=54.5
Q ss_pred CeEEEEECCCCCEEEEEeC--------C--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCcEEEE
Q 004785 109 STIAAAFSPDGKTLASTHG--------D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLW 177 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~--------D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~DgtVrLW 177 (730)
.-.-+++++..++|++.-. | ..|.++|+.+++.+..+..- ..+.+|+++.++.-+|+..+ .++.+.+|
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 3445777765555554321 2 34888899999999988732 35779999985555666554 58999999
Q ss_pred ECCCCeEEEEecCCC
Q 004785 178 NASTAECIGSRDFYR 192 (730)
Q Consensus 178 Dl~tg~~i~~l~h~~ 192 (730)
|..+|+.+...+.-+
T Consensus 318 D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 318 DAATGKLVRSIEQLG 332 (342)
T ss_dssp ETTT--EEEEE---S
T ss_pred eCcCCcEEeehhccC
Confidence 999999998876433
No 410
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.32 E-value=1e+02 Score=37.95 Aligned_cols=210 Identities=16% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCCCCeEEEEEC---C--C--CCEEEEEeCCCeEEEEE------CCC---------CeEEEEEec---CCCCcEEEEEcc
Q 004785 105 PPPRSTIAAAFS---P--D--GKTLASTHGDHTVKIID------CQT---------GSCLKVLHG---HRRTPWVVRFHP 159 (730)
Q Consensus 105 gH~~~Vt~lafS---P--D--G~~LaSgS~DgtVrVWD------l~t---------g~~l~~l~g---H~~~V~sVafSP 159 (730)
.-..+|..|+|. . + .++|++= ....+.|+. +.. ..++..+.. -..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678899998 2 2 2355443 445666666 111 123334431 123566799999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCe------EEEEecCC----------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785 160 LNPTIIASGSLDHEVRLWNASTAE------CIGSRDFY----------RPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWDl~tg~------~i~~l~h~----------~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~ 223 (730)
.+...||.....|...|||+..+. ........ +.-..|.|.++-+.|++.+..++.++|+++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 888899999999999999992211 11111111 23347889999899999988889999998876
Q ss_pred cccCCeEEecCCCCeEEEEEccC--CCeEEEEEe--eC-CccCCC-cceeEeccCCcccCCCCeEEEecCCCCCCCCccc
Q 004785 224 ETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE--VN-DLDSSE-SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAE 297 (730)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPd--G~~Llatgs--vw-dl~s~~-~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~ 297 (730)
.... .........|..+.-+++ +..++.|.. +| ++.... ....+..-..+.....+.+.+.....
T Consensus 236 ~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~-------- 306 (765)
T PF10214_consen 236 QTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKV-------- 306 (765)
T ss_pred ccch-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEc--------
Confidence 5221 223334567888988887 333444443 44 222211 22223222222211122222221000
Q ss_pred ccCCCCCCceeeeEecCCCEEEEEecCCCCC
Q 004785 298 EVPLITPPFLRPSFVRDDERISLQHTEHDSG 328 (730)
Q Consensus 298 ~~~~~slpil~p~FSpDg~rI~~~~~~~dsg 328 (730)
....+...-||+....|.++......+
T Consensus 307 ----~~~~~~~~lyS~~~~~v~v~~f~~~~~ 333 (765)
T PF10214_consen 307 ----GDTDFVVFLYSRLNPLVYVYFFSFSSG 333 (765)
T ss_pred ----CCCEEEEEEEcCCCCcEEEEEEecCCC
Confidence 012233667788888887776655443
No 411
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=84.33 E-value=18 Score=40.89 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=90.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC------CC------CCCCCeEEEEECC-----CC---CEEEEEeCCCeEEEEECC-
Q 004785 79 DARRGLASWVEAESLHHLRPKYCP------LS------PPPRSTIAAAFSP-----DG---KTLASTHGDHTVKIIDCQ- 137 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~------L~------gH~~~Vt~lafSP-----DG---~~LaSgS~DgtVrVWDl~- 137 (730)
.+-..++.+.++|.+.+.|.+... +. .....|+++.|+- |+ -.|+.|.+.|.+.+|.+.
T Consensus 95 S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 95 SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp -BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred CCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 355688899999999999996431 11 2345688999973 33 368899999999999874
Q ss_pred -C-CeEE----EEEecCCCCcEEEE-EccCCC-------------------CEEEEEeCCCcEEEEECCCCeEEEEecCC
Q 004785 138 -T-GSCL----KVLHGHRRTPWVVR-FHPLNP-------------------TIIASGSLDHEVRLWNASTAECIGSRDFY 191 (730)
Q Consensus 138 -t-g~~l----~~l~gH~~~V~sVa-fSP~dg-------------------~lLaSgS~DgtVrLWDl~tg~~i~~l~h~ 191 (730)
. +... .....+.++|..|. |+.+++ .-++....+..++++...+.+...+....
T Consensus 175 ~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~ 254 (395)
T PF08596_consen 175 SSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD 254 (395)
T ss_dssp -GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred CCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence 1 2222 12224566666655 432111 22344455678999999988776654422
Q ss_pred -CCeEEEEEc-----CCCCEEEEEE-CCeEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 004785 192 -RPIASIAFH-----ASGELLAVAS-GHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTA 254 (730)
Q Consensus 192 -~~V~sVafS-----PdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l-~~h~~~V~sVaFSPdG~~Llatg 254 (730)
-....+.+- ..+..|++-. ++.|++|.+..-+++...... ......+....|+++|..++.++
T Consensus 255 ~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 255 PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp -EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 223334452 2455666655 556999999887664411110 01122345667899998665543
No 412
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.95 E-value=13 Score=40.13 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=75.9
Q ss_pred CeEEEEeCCCC-----CC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEec-CCCCcEEEEEc
Q 004785 91 ESLHHLRPKYC-----PL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHG-HRRTPWVVRFH 158 (730)
Q Consensus 91 gsIrlWd~~t~-----~L-----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~g-H~~~V~sVafS 158 (730)
|.|.++++... ++ ....+.|++++-- +|+ |+.+. ...|.+|++...+ .+..-.- ..-.+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 66777776652 11 2346789888876 444 55444 4789999998877 4332221 22245555554
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-CeEEEEe---cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785 159 PLNPTIIASGSLDHEVRLWNAST-AECIGSR---DFYRPIASIAFHASGELLAVASG-HKLYIWRYNM 221 (730)
Q Consensus 159 P~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l---~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t 221 (730)
+++++.|.....|.++.++. ...+..+ .....+.++.|-++++.++++.. +.+.++.+..
T Consensus 139 ---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 ---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 56888898888888775443 3322222 24556888999877777776664 4588888763
No 413
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.72 E-value=15 Score=41.99 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=77.2
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNM 221 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t 221 (730)
..+++|.+|.|++ |.+.++.--.|++|.+++....+...... ....|....|+.+ .-+|..++.++.+|....
T Consensus 64 ~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLP 141 (657)
T ss_pred cCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEch
Confidence 3567899999999 99999999999999999985444333322 2235888899865 677878887888887654
Q ss_pred CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
.+. ..+....+.-.|.-..|.++.+.++.+..
T Consensus 142 ekr--slRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKR--SLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhh--hhhhhhhcccCccEEEEccccceEeeecc
Confidence 433 23456677888999999999887665544
No 414
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=82.60 E-value=1.3e+02 Score=37.65 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=84.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccC--CCC---EEEEEeCCCcEEEEEC-
Q 004785 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL--NPT---IIASGSLDHEVRLWNA- 179 (730)
Q Consensus 107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~--dg~---lLaSgS~DgtVrLWDl- 179 (730)
++.++....+-+...++.++.++.+...++..+...... +.-...|.|+.++|. +.+ +++.|..+..+.+.-.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 445666666667778888888888888887766522222 223467899999974 333 7888887766554433
Q ss_pred CCCeEEEEe--c---CCCCeEEEEEcCCCCEEEEEECCe---EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785 180 STAECIGSR--D---FYRPIASIAFHASGELLAVASGHK---LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (730)
Q Consensus 180 ~tg~~i~~l--~---h~~~V~sVafSPdG~~LAsgSdd~---I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll 251 (730)
.+...+... . -...|--..|--|+.+|.++.+++ -++.|..++...... ...-...++.--.|+..++.-+
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTLGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc-ccccCCCCcEEEEEeeCCceEE
Confidence 333333222 1 234556666777788888887555 356666666543311 1122234454445655554433
Q ss_pred EE
Q 004785 252 LT 253 (730)
Q Consensus 252 at 253 (730)
.+
T Consensus 646 fa 647 (1096)
T KOG1897|consen 646 FA 647 (1096)
T ss_pred EE
Confidence 33
No 415
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.75 E-value=22 Score=34.30 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=68.0
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCC--------eEEEEEecCCCCcEEEEEcc---C-CCCEEEEEeCCCcEEEEECC
Q 004785 113 AAFSPDGKTLASTHGDHTVKIIDCQTG--------SCLKVLHGHRRTPWVVRFHP---L-NPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 113 lafSPDG~~LaSgS~DgtVrVWDl~tg--------~~l~~l~gH~~~V~sVafSP---~-dg~lLaSgS~DgtVrLWDl~ 180 (730)
-.|......|+.++.-++|.|++.... ..+..|. -...|++++-.+ . +.+.|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 344444445666667777777765432 1223332 334566665433 2 345666655 4579999999
Q ss_pred CCeEEEEecCCCCeEEEEEcC----CCCEEEEEECCeEEEEEcCCCc
Q 004785 181 TAECIGSRDFYRPIASIAFHA----SGELLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 181 tg~~i~~l~h~~~V~sVafSP----dG~~LAsgSdd~I~VWDl~t~~ 223 (730)
...-+...+..+.|+++.+-. +..++++|++..|.-||....+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 888777777778888887743 3457777777778888765543
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.60 E-value=42 Score=36.71 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=72.1
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-CCCCeEEEE--Ee--cC
Q 004785 78 RDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIID-CQTGSCLKV--LH--GH 148 (730)
Q Consensus 78 ~d~g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD-l~tg~~l~~--l~--gH 148 (730)
.+++..++.+........||.-..... .-...|..|.|+||+.+.+.+ ..+.|+.=+ ....+.... .. .-
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~ 231 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN 231 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence 345555555555555678876433222 235679999999998776655 888888877 222222211 11 11
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGHKLYIW 217 (730)
Q Consensus 149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVafSPdG~~LAsgSdd~I~VW 217 (730)
.-.+..++|.+ +..+.++|+.. + .+.....|+.-+.. ......+.|.|..+.+-++.|.++.|--|
T Consensus 232 ~~~~ld~a~~~-~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 232 GYGILDLAYRP-PNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -S-EEEEEESS-SS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ceeeEEEEecC-CCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 22367899998 67777765544 3 33445556554443 23567889999887788888877764433
No 417
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.18 E-value=55 Score=37.17 Aligned_cols=138 Identities=12% Similarity=0.050 Sum_probs=77.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----
Q 004785 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---- 183 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~---- 183 (730)
...+..++||.+++.+..-..++-|| .|... ..+ ......+..+.|.+ ++.+++.+ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence 44566778887777765443333444 23321 111 22345688899988 77777655 555543 4444443
Q ss_pred -EEEEecC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 184 -CIGSRDF---YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 184 -~i~~l~h---~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
....... ...+.++.|.+++..+++|..+.+.+.. ..++.-........-...++.+.|.++++.++++
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 2222222 2358899999999988888776655543 3333211000012234578899998887755543
No 418
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.17 E-value=49 Score=31.96 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=57.4
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCC--------eEEEEecCCCCeEEEEEcC-----CCCEEEEEECCeEEEEEcCC
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTA--------ECIGSRDFYRPIASIAFHA-----SGELLAVASGHKLYIWRYNM 221 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg--------~~i~~l~h~~~V~sVafSP-----dG~~LAsgSdd~I~VWDl~t 221 (730)
-+|.. ..--|+.++.-+.|.|++.... ..+..+..+..|++++-.+ +...|+.|+...|..||+..
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 34544 3345666677788888876532 3456677788888886433 34589999999999999987
Q ss_pred CccccCCeEEecCCCCeEEEEEc
Q 004785 222 REETSSPRIVLRTRRSLRAVHFH 244 (730)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFS 244 (730)
...+- ...-.+.|+++.+-
T Consensus 83 N~d~F----yke~~DGvn~i~~g 101 (136)
T PF14781_consen 83 NSDLF----YKEVPDGVNAIVIG 101 (136)
T ss_pred Cchhh----hhhCccceeEEEEE
Confidence 75432 34445677777764
No 419
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.99 E-value=52 Score=38.04 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=64.3
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ec------CCCCeEEEEEcCCC------CEEEEE
Q 004785 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD------FYRPIASIAFHASG------ELLAVA 209 (730)
Q Consensus 144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~------h~~~V~sVafSPdG------~~LAsg 209 (730)
.+...-...+.|+|.| ++++|++--..|.|++++..++..... +. ..+....|+|+|+- .+|++.
T Consensus 24 ~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 3444455688999999 787777655469999998765532211 11 24667899999884 345544
Q ss_pred E-----------CCeEEEEEcCCC--ccccCCeEEecC----CCCeEEEEEccCCCeEEEEEee
Q 004785 210 S-----------GHKLYIWRYNMR--EETSSPRIVLRT----RRSLRAVHFHPHAAPLLLTAEV 256 (730)
Q Consensus 210 S-----------dd~I~VWDl~t~--~~~~~~~~l~~h----~~~V~sVaFSPdG~~Llatgsv 256 (730)
. ...|.-|.+... ........+... ...-..|.|.|||..+++++..
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2 122555555321 111111112111 1123578899999977766653
No 420
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.77 E-value=33 Score=35.62 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred CEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC------CcEEEE---ECC--CCeEE-
Q 004785 120 KTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLW---NAS--TAECI- 185 (730)
Q Consensus 120 ~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D------gtVrLW---Dl~--tg~~i- 185 (730)
+.|+.+...+.|.+|++.. .+.+..|..- +.|..+.++. .|++++|--.+ ..+|+| +.. ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4454445667899999873 3455666544 7789999998 89999985332 245653 322 11111
Q ss_pred -EE---------------------ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785 186 -GS---------------------RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 186 -~~---------------------l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~ 223 (730)
.. +.....+.+++-.|-.--|++|+++++.||.+....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 11 123345677888886556778889999999876543
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.20 E-value=1.2e+02 Score=37.52 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=84.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC---CCCCCe-------------EEEEECC--CCCEEEEEeC----------CCeEE
Q 004785 81 RRGLASWVEAESLHHLRPKYCPLS---PPPRST-------------IAAAFSP--DGKTLASTHG----------DHTVK 132 (730)
Q Consensus 81 g~~L~Sgs~DgsIrlWd~~t~~L~---gH~~~V-------------t~lafSP--DG~~LaSgS~----------DgtVr 132 (730)
+.+|+.+..|+.+.-.|.+++++. +..+.| ..+.-+| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 447788888999988998887532 122211 1122223 2445666643 68899
Q ss_pred EEECCCCeEEEEEecC-----------------CCCc-EEEEEccCCCCEEEEEe------------------CCCcEEE
Q 004785 133 IIDCQTGSCLKVLHGH-----------------RRTP-WVVRFHPLNPTIIASGS------------------LDHEVRL 176 (730)
Q Consensus 133 VWDl~tg~~l~~l~gH-----------------~~~V-~sVafSP~dg~lLaSgS------------------~DgtVrL 176 (730)
-+|+++|+.+-.+..- ...+ ..+++.+ ...+++.+. ..+.|.-
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999999988776410 0111 2345555 333333311 2345777
Q ss_pred EECCCCeEEEEecC-CC---------CeEEEEEcC-CCC---EEEEEEC-CeEEEEEcCCCcccc
Q 004785 177 WNASTAECIGSRDF-YR---------PIASIAFHA-SGE---LLAVASG-HKLYIWRYNMREETS 226 (730)
Q Consensus 177 WDl~tg~~i~~l~h-~~---------~V~sVafSP-dG~---~LAsgSd-d~I~VWDl~t~~~~~ 226 (730)
.|+++|+.+..++. .. ...-+.+.- +|+ .|+.++. +.+++.|-++++.+.
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 89999998877652 11 111122322 664 6666664 449999999998654
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.10 E-value=63 Score=39.33 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEecCCCCeEEEEEc--CCCCEEEEEECCe-EEEE
Q 004785 161 NPTIIASGSLDHEVRLWNAST-------A-------------ECIGSRDFYRPIASIAFH--ASGELLAVASGHK-LYIW 217 (730)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl~t-------g-------------~~i~~l~h~~~V~sVafS--PdG~~LAsgSdd~-I~VW 217 (730)
+..+|+.|..||.|.+|.+.+ . ++...+.....+++++++ ...++||++++.. |.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567888899999999996521 0 011223345688999998 7778888888654 7666
Q ss_pred EcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004785 218 RYNMREETSSPRIVLRTRRSLRAVHFHPHA 247 (730)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG 247 (730)
-+..............+...|-+|.|-++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~ 222 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDD 222 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCC
Confidence 654432111111123466788899998755
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.79 E-value=37 Score=35.94 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=68.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEe--CCCCCCCCC-------------CCCeEEEEECCCCCEEEEEeCCCeEEE
Q 004785 69 SFSQIFEAGRDARRGLASWVEAESLHHLR--PKYCPLSPP-------------PRSTIAAAFSPDGKTLASTHGDHTVKI 133 (730)
Q Consensus 69 s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd--~~t~~L~gH-------------~~~Vt~lafSPDG~~LaSgS~DgtVrV 133 (730)
..+..+.|..+.+..-+.-+.+-+|.-|| ..++.+... .-.--.++...+|++.+++-+.++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 33445555666666666667777787777 445422110 011224555667888888888899999
Q ss_pred EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE
Q 004785 134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168 (730)
Q Consensus 134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg 168 (730)
.|..+|+.+..++-.+..|++++|--.+-+++++.
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 99999999999999999999999964344555543
No 424
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.61 E-value=16 Score=37.99 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=16.5
Q ss_pred CCCeEEEEEccCCCeEEEEEeeC
Q 004785 235 RRSLRAVHFHPHAAPLLLTAEVN 257 (730)
Q Consensus 235 ~~~V~sVaFSPdG~~Llatgsvw 257 (730)
..-.+.+++.|++..++.+++.|
T Consensus 228 ~nvlNGIA~~~~~~r~~iTGK~w 250 (262)
T COG3823 228 DNVLNGIAHDPQQDRFLITGKLW 250 (262)
T ss_pred cccccceeecCcCCeEEEecCcC
Confidence 44556778888777777777766
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=78.59 E-value=7.4 Score=30.15 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=26.3
Q ss_pred CCeEEEEECCC-C--CEEEEEeCCCeEEEEECCCC
Q 004785 108 RSTIAAAFSPD-G--KTLASTHGDHTVKIIDCQTG 139 (730)
Q Consensus 108 ~~Vt~lafSPD-G--~~LaSgS~DgtVrVWDl~tg 139 (730)
+.|.++.|||+ + .+|+.+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58888877899999999853
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.95 E-value=21 Score=39.22 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=56.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---EEEE----ecCCCCcEEEEEccC---CCCEEEEEeCC-------
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVL----HGHRRTPWVVRFHPL---NPTIIASGSLD------- 171 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l----~gH~~~V~sVafSP~---dg~lLaSgS~D------- 171 (730)
..+.|+|.|||++|++ -..|.|++++ .++.. +..+ .........++++|+ ++.++++-+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877765 5699999999 55554 2222 123345788999992 24444444422
Q ss_pred -CcEEEEECCCC--e-----EEE-Eec----CCCCeEEEEEcCCCCEEEEEE
Q 004785 172 -HEVRLWNASTA--E-----CIG-SRD----FYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 172 -gtVrLWDl~tg--~-----~i~-~l~----h~~~V~sVafSPdG~~LAsgS 210 (730)
..|.-|.+..+ . .+. ... .......+.|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 23554554433 1 111 111 234567799999997555554
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=77.48 E-value=5.9 Score=30.70 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=27.0
Q ss_pred CCcEEEEEccCCC--CEEEEEeCCCcEEEEECCC
Q 004785 150 RTPWVVRFHPLNP--TIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 150 ~~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~t 181 (730)
+.|.+++|+|..+ ++|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4588999998555 6888888889999999995
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.37 E-value=25 Score=38.19 Aligned_cols=110 Identities=10% Similarity=0.226 Sum_probs=72.7
Q ss_pred EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG-HKLYIWRYNM 221 (730)
Q Consensus 145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t 221 (730)
+.+-...+.++.|+| +.+.+++......-.+|=-..|+.+..+. .-.....|.+.-+|+++++--. ..++++.+..
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 345556699999999 66766666666666777667799888865 3345567788877776665543 3488887765
Q ss_pred CccccCCeE------EecC-CCCeEEEEEccCCCeEEEEEe
Q 004785 222 REETSSPRI------VLRT-RRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 222 ~~~~~~~~~------l~~h-~~~V~sVaFSPdG~~Llatgs 255 (730)
......... ...+ +.....++|+|....+++.-+
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 532211111 1112 557789999999987777655
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.47 E-value=56 Score=35.39 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=90.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS- 187 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~- 187 (730)
.-..++-++||..-+++...+.|--.|-.+|+....--+.......|..-| ++..-++-+.. -|.-.|-++.+....
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEee
Confidence 456788899999999998889998889999987665556666677888999 55544442222 566677766554332
Q ss_pred e--c-CCCCeEEEEEcCCCCEEEEEECC----------eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 188 R--D-FYRPIASIAFHASGELLAVASGH----------KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 188 l--~-h~~~V~sVafSPdG~~LAsgSdd----------~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
+ + -....+...|++.|++-+++..+ .|++|+...+. .-+.++-.|||...++
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------gpyGi~atpdGsvwya 205 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------GPYGICATPDGSVWYA 205 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------CCcceEECCCCcEEEE
Confidence 1 2 24567889999999999888632 27777665443 3356778888885554
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.44 E-value=0.46 Score=53.98 Aligned_cols=142 Identities=11% Similarity=0.144 Sum_probs=96.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i 185 (730)
|-..-....|-+.+.-++.++-+..|..||-. |+.+..+. ..+....++|.-+....++-+-..+.+.+||+.+....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 33344566778877778888889999999943 44333332 34556678888744455566778889999999865322
Q ss_pred EE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785 186 GS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 186 ~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
.. ++....-.-+.|++.+..++.+.. +.+.|++..+..... ....|...+.+++|.+.+..++.
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccceeeec
Confidence 21 222222233779999999998874 459999988776433 34448899999999998875554
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.02 E-value=55 Score=40.81 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=96.7
Q ss_pred EEEEeCCCCC-CCCCC-------CCeEEEEECCC-CCEEEEEeC----------CCeEEEEECCCCeEEEEEecC--CCC
Q 004785 93 LHHLRPKYCP-LSPPP-------RSTIAAAFSPD-GKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH--RRT 151 (730)
Q Consensus 93 IrlWd~~t~~-L~gH~-------~~Vt~lafSPD-G~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH--~~~ 151 (730)
++++|..+-+ +..|. -.|.++.|..| +.++++|.. .|.|.|+.+..++.++....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 6777776642 22222 23556668887 777877753 477888877775545444332 345
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCe
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPR 229 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~ 229 (730)
|.++..- +++++|. -...|+++++.+++.++. -.+...+..+...-.|..+++|.- ..+.+..++..+..-...
T Consensus 832 v~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred eeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 5554432 5666654 456799999998865554 457778888999999999999973 445555554433111011
Q ss_pred EEecCCCCeEEEEEccCCCeEEE
Q 004785 230 IVLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 230 ~l~~h~~~V~sVaFSPdG~~Lla 252 (730)
...-+..+++++.+-.+..++.+
T Consensus 908 ArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred ehhhCccceeeEEEecCceEEee
Confidence 12235667888888776665544
No 432
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.63 E-value=16 Score=26.73 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=28.6
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCcEEEEE
Q 004785 117 PDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (730)
Q Consensus 117 PDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~~~V~sVaf 157 (730)
||+++|+++. .+++|.++|..+++.+..+.. ......+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5777777665 478999999999988888765 333445554
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=74.28 E-value=3.4 Score=50.18 Aligned_cols=105 Identities=15% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEE-----------ECCCCCEEEEEeCCCeEEEEECC-----CCe
Q 004785 80 ARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAA-----------FSPDGKTLASTHGDHTVKIIDCQ-----TGS 140 (730)
Q Consensus 80 ~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~la-----------fSPDG~~LaSgS~DgtVrVWDl~-----tg~ 140 (730)
.+..+..+.+++.|++....+. .+.+|...++.++ .||||+.|+.++.||.|+.|-+. .-+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~r 273 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHR 273 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHh
Confidence 3466667778888887776543 3556777766554 58999999999999998888652 223
Q ss_pred EEEEEecCCC-CcEEEEEccCCC---------CEEEEEe-CCCcEEEEECCCCeEE
Q 004785 141 CLKVLHGHRR-TPWVVRFHPLNP---------TIIASGS-LDHEVRLWNASTAECI 185 (730)
Q Consensus 141 ~l~~l~gH~~-~V~sVafSP~dg---------~lLaSgS-~DgtVrLWDl~tg~~i 185 (730)
++...+.|.+ +-.|.-|+. .. .++++++ ....+++|.-...+|.
T Consensus 274 clhewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 274 CLHEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4455566663 222222432 11 1333433 3556888887776665
No 434
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=72.73 E-value=42 Score=36.92 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=71.9
Q ss_pred EEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 004785 133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG- 211 (730)
Q Consensus 133 VWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd- 211 (730)
++|+.+++.+. .|. .-..+-.|+ ++++.++-+..|.|.-+|..+|+........+....++|. |+++++|-.
T Consensus 189 vidv~s~evl~--~GL-smPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 189 VIDIPSGEVVA--SGL-SMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred EEEeCCCCEEE--cCc-cCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 36777776542 222 123456776 5888999999999999999989877777777788899998 888877731
Q ss_pred --------------------CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004785 212 --------------------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA 247 (730)
Q Consensus 212 --------------------d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG 247 (730)
.+|.|.|++++..+. ...+.+.-..+++|+.-|.-
T Consensus 262 ~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~-~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 262 LRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVH-WLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred ccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEE-EEEeCCceeEEEEEEEecCC
Confidence 126677777776544 22333344456666666653
No 435
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=72.07 E-value=2.3e+02 Score=34.24 Aligned_cols=273 Identities=18% Similarity=0.120 Sum_probs=140.2
Q ss_pred eeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCC------eEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEe
Q 004785 55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAE------SLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTH 126 (730)
Q Consensus 55 ~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~Dg------sIrlWd~~t~~L~g--H~~~Vt~lafSPDG~~LaSgS 126 (730)
.+.+.|.+..+-..+|..+..+..+....++.++.|. ++++-|+.++.+.. -.+....++|..|++.|+...
T Consensus 113 eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 113 EEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred eeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEE
Confidence 3445555555444455555555444445555555444 48889998885432 233477899999999887776
Q ss_pred CCCe---EEEE--ECCC--CeEEEEEecCCCC-cEEEEEccCCCCEEEEEeC---CCcEEEEECCCCeE--EEEecCCCC
Q 004785 127 GDHT---VKII--DCQT--GSCLKVLHGHRRT-PWVVRFHPLNPTIIASGSL---DHEVRLWNASTAEC--IGSRDFYRP 193 (730)
Q Consensus 127 ~Dgt---VrVW--Dl~t--g~~l~~l~gH~~~-V~sVafSP~dg~lLaSgS~---DgtVrLWDl~tg~~--i~~l~h~~~ 193 (730)
.|.. =+|| .+.+ ..-...+...... ...|.-+. ..++|+.... .+.+++.|...... .....-...
T Consensus 193 ~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g 271 (682)
T COG1770 193 LDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG 271 (682)
T ss_pred EcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence 5422 2333 3333 1222233322221 11222222 3344443332 24577777765433 222222211
Q ss_pred eEEEEEcCCCCEEEEEE--CCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEec
Q 004785 194 IASIAFHASGELLAVAS--GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLAT 270 (730)
Q Consensus 194 V~sVafSPdG~~LAsgS--dd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t 270 (730)
+. ......|.+++.-+ +++ .+|..............+..|...++--.|+--..+|+.......+
T Consensus 272 ~e-Y~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~gl----------- 339 (682)
T COG1770 272 VE-YSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGL----------- 339 (682)
T ss_pred cE-EeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCC-----------
Confidence 11 11112245444444 232 6666554411112245677787777777777667767655432111
Q ss_pred cCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-eeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccC
Q 004785 271 SPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYST 349 (730)
Q Consensus 271 ~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~ 349 (730)
+.+.+.+...+....+....... ..+ ....-.|..+|.+.-.+.+.+.+.+..++.+...+.|-...-
T Consensus 340 ---------p~v~v~~~~~~~~~~i~f~~~ay--~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV 408 (682)
T COG1770 340 ---------PRVVVRDRKTGEERGIAFDDEAY--SAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEV 408 (682)
T ss_pred ---------ceEEEEecCCCceeeEEecchhh--hccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccC
Confidence 23444443333332222221111 111 233445688899988999999999999999888776655544
Q ss_pred CC
Q 004785 350 PS 351 (730)
Q Consensus 350 ~~ 351 (730)
+.
T Consensus 409 ~~ 410 (682)
T COG1770 409 PG 410 (682)
T ss_pred CC
Confidence 44
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.39 E-value=80 Score=36.40 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=71.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE----EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK----VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~----~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
..+.|.++.||+|.+.||.--.|.+|.+++....+... ..+.....|....|+. + .-++-....| +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEch
Confidence 35689999999999999999999999999984433221 2233344578888876 4 4444444333 55555443
Q ss_pred CeE-EE-EecCCCCeEEEEEcCCCCEEEEEEC--C-eEEEEEcCCCc
Q 004785 182 AEC-IG-SRDFYRPIASIAFHASGELLAVASG--H-KLYIWRYNMRE 223 (730)
Q Consensus 182 g~~-i~-~l~h~~~V~sVafSPdG~~LAsgSd--d-~I~VWDl~t~~ 223 (730)
.+. ++ ...++-.|+-..|.++-+.+..++. + .+.=+.++++.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 221 22 2236678888899999885544442 2 24444444443
No 437
>PHA03098 kelch-like protein; Provisional
Probab=71.29 E-value=1.3e+02 Score=34.84 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=63.9
Q ss_pred eEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEE--EEEecCCCCcEEEEEc
Q 004785 92 SLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCL--KVLHGHRRTPWVVRFH 158 (730)
Q Consensus 92 sIrlWd~~t~~L------~gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l--~~l~gH~~~V~sVafS 158 (730)
.+..||..+.+. .........+.+ +++.++.|+.+ .++..||..+++=. ..+...... .+++.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~- 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN- 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-
Confidence 467788766521 111112222332 57777888765 35778887765411 111111111 12222
Q ss_pred cCCCCEEEEEeCC------CcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEEC---------CeEEEEEcCC
Q 004785 159 PLNPTIIASGSLD------HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG---------HKLYIWRYNM 221 (730)
Q Consensus 159 P~dg~lLaSgS~D------gtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSd---------d~I~VWDl~t 221 (730)
- ++.+++.|+.+ ..+..||..+++....-. ....-.++ ..-++++.+.|+. ..+.+||..+
T Consensus 388 ~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 2 56777777732 458899998766543321 11111122 2235666666652 1278888876
Q ss_pred Cc
Q 004785 222 RE 223 (730)
Q Consensus 222 ~~ 223 (730)
.+
T Consensus 466 ~~ 467 (534)
T PHA03098 466 NK 467 (534)
T ss_pred Cc
Confidence 64
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.63 E-value=1.8e+02 Score=33.14 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=66.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEec--CCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----CLKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-----~l~~l~g--H~~~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (730)
....++.+.|.+++.+++.+ .+|.+.. ....++ ....+.. -...+..+.|.+ ++..+++ +.+|.+....
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~-G~~G~v~~s~ 354 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAA-GGSGILLRST 354 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEE-ECCCcEEEeC
Confidence 34568999999998887766 5566543 444453 2222221 123478888887 6565554 5667666553
Q ss_pred CCCCeEEEEec----CCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785 179 ASTAECIGSRD----FYRPIASIAFHASGELLAVASGHKLYIW 217 (730)
Q Consensus 179 l~tg~~i~~l~----h~~~V~sVafSPdG~~LAsgSdd~I~VW 217 (730)
..|+.-.... .....+.+.|.++++.+++|.++.|.-|
T Consensus 355 -D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 355 -DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred -CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 4454433322 2457889999988888888877765443
No 439
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.41 E-value=2.1e+02 Score=33.14 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=43.8
Q ss_pred EEEEE---eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCC----
Q 004785 121 TLAST---HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP---- 193 (730)
Q Consensus 121 ~LaSg---S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~---- 193 (730)
+++.. .......+.|. +|..+..+.........+..-+ ++.+++... ..++.+|+. |+.+........
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCccccc
Confidence 44444 24567788884 5666655543222221155566 777776555 779999985 666666554432
Q ss_pred eEEEEEcCCCCEEEEEE
Q 004785 194 IASIAFHASGELLAVAS 210 (730)
Q Consensus 194 V~sVafSPdG~~LAsgS 210 (730)
-..+.+-|+|++|+.+.
T Consensus 192 HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 192 HHDIDELPNGNLLILAS 208 (477)
T ss_dssp -S-EEE-TTS-EEEEEE
T ss_pred ccccEECCCCCEEEEEe
Confidence 25677889999888776
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=70.41 E-value=34 Score=37.60 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=57.2
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE---EEEe-----cCCCCeEEEEEcCC---CCEEEEEEC--------
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-----DFYRPIASIAFHAS---GELLAVASG-------- 211 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~l-----~h~~~V~sVafSPd---G~~LAsgSd-------- 211 (730)
..+.|+|.| +++++++ ...|.|++++ ..+.. +..+ ........++|+|+ ..+|++...
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467899999 7777665 6699999999 44443 2222 13457899999995 233333321
Q ss_pred --CeEEEEEcCCC--ccc--cCCe-EEec---CCCCeEEEEEccCCCeEEEEEeeCC
Q 004785 212 --HKLYIWRYNMR--EET--SSPR-IVLR---TRRSLRAVHFHPHAAPLLLTAEVND 258 (730)
Q Consensus 212 --d~I~VWDl~t~--~~~--~~~~-~l~~---h~~~V~sVaFSPdG~~Llatgsvwd 258 (730)
..|.-|.+... ... .... .... ....-..|.|.|||..+++++...+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 12444544433 110 0000 1111 2234567999999987777776444
No 441
>PHA02713 hypothetical protein; Provisional
Probab=70.20 E-value=1.8e+02 Score=34.54 Aligned_cols=125 Identities=8% Similarity=-0.018 Sum_probs=64.2
Q ss_pred CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEECCCCe--EEEEEecCCCCcEEEEE
Q 004785 91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDH-----TVKIIDCQTGS--CLKVLHGHRRTPWVVRF 157 (730)
Q Consensus 91 gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~Dg-----tVrVWDl~tg~--~l~~l~gH~~~V~sVaf 157 (730)
..+..||..+.. +.........+. -+|++.+.|+.++ +|..||..+.+ .+..+.........+..
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~ 397 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL 397 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE
Confidence 347788877652 111111122222 2677888888753 48889987653 11122211111222232
Q ss_pred ccCCCCEEEEEeCCC-----------------------cEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEECC
Q 004785 158 HPLNPTIIASGSLDH-----------------------EVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH 212 (730)
Q Consensus 158 SP~dg~lLaSgS~Dg-----------------------tVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSdd 212 (730)
++.+++.|+.++ +|..||..+.+-...-. ....-.++ ..-+|++.+.|+.+
T Consensus 398 ---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~-~~~~~~IYv~GG~~ 473 (557)
T PHA02713 398 ---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV-VSHKDDIYVVCDIK 473 (557)
T ss_pred ---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE-EEECCEEEEEeCCC
Confidence 678888887653 47778887765443321 11111112 22346666666521
Q ss_pred -------eEEEEEcCC
Q 004785 213 -------KLYIWRYNM 221 (730)
Q Consensus 213 -------~I~VWDl~t 221 (730)
.+..||..+
T Consensus 474 ~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 474 DEKNVKTCIFRYNTNT 489 (557)
T ss_pred CCCccceeEEEecCCC
Confidence 267888876
No 442
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=70.17 E-value=21 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=32.9
Q ss_pred EeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe
Q 004785 168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK 213 (730)
Q Consensus 168 gS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~ 213 (730)
+..+|.+..||..+++....+..-.-.+.|++++|+.+|+++-..+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 3456788999999988766655445678999999999998887443
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.05 E-value=32 Score=35.65 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=45.6
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-------e-------cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-------H-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 115 fSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-------~-------gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
+..++++|+.-+.+|.+++||+.+++.+..- . .....|..+.++. +|.-+++-+ +|..+.||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 3346788888889999999999888754221 1 2345566777775 666665544 4667777766
Q ss_pred CCeEEE
Q 004785 181 TAECIG 186 (730)
Q Consensus 181 tg~~i~ 186 (730)
-+.-+.
T Consensus 96 L~~W~~ 101 (219)
T PF07569_consen 96 LGCWIR 101 (219)
T ss_pred cceeEE
Confidence 554443
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=69.34 E-value=87 Score=38.61 Aligned_cols=112 Identities=9% Similarity=0.061 Sum_probs=74.9
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-----eEEEEEecCCCC----------cEEEEEccCCCCEEEEEeCCC
Q 004785 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRT----------PWVVRFHPLNPTIIASGSLDH 172 (730)
Q Consensus 109 ~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-----~~l~~l~gH~~~----------V~sVafSP~dg~lLaSgS~Dg 172 (730)
...+++|+| +.+.||.-...|...|||+... ..+.....+.+. ...|.|.+ +.+.|+.++..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r~- 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNRS- 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcCC-
Confidence 467899999 6779999999999999999221 111111122222 23688987 66666666544
Q ss_pred cEEEEECCCCeEEE-E--ecCCCCeEEEEEcCCC-CEEEEEECCeEEEEEcCCC
Q 004785 173 EVRLWNASTAECIG-S--RDFYRPIASIAFHASG-ELLAVASGHKLYIWRYNMR 222 (730)
Q Consensus 173 tVrLWDl~tg~~i~-~--l~h~~~V~sVafSPdG-~~LAsgSdd~I~VWDl~t~ 222 (730)
.+.++|+.+..... . ......|..+.-+|+. .+++.-+...|...|+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSS 278 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCC
Confidence 58999999876533 2 2345688888888873 3555556667888888764
No 445
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=69.03 E-value=1.6e+02 Score=33.13 Aligned_cols=175 Identities=11% Similarity=0.034 Sum_probs=88.8
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC--CC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC--CCCe
Q 004785 75 EAGRDARRGLASWVEAESLHHLRPK--YC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGS 140 (730)
Q Consensus 75 ~a~~d~g~~L~Sgs~DgsIrlWd~~--t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl--~tg~ 140 (730)
....+++..++++..+|-|..-+.. .. ....-.+.-..++|...|.-|+.+. ...-+|.+ ..++
T Consensus 70 ~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaD--AYlGL~~V~p~g~~ 147 (376)
T KOG1520|consen 70 TGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVAD--AYLGLLKVGPEGGL 147 (376)
T ss_pred EEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEe--cceeeEEECCCCCc
Confidence 3344566667788888877766652 11 0111235667899999886666663 33334433 3332
Q ss_pred EEEEEecCCC-----CcEEEEEccCCCCEEEE-----------------EeCCCcEEEEECCCCeEEEEecCCCCeEEEE
Q 004785 141 CLKVLHGHRR-----TPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAECIGSRDFYRPIASIA 198 (730)
Q Consensus 141 ~l~~l~gH~~-----~V~sVafSP~dg~lLaS-----------------gS~DgtVrLWDl~tg~~i~~l~h~~~V~sVa 198 (730)
...+..+.. -.+.+.+++ ++.++++ +..+|.+.-||..+......+..-.-.+.++
T Consensus 148 -a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGla 225 (376)
T KOG1520|consen 148 -AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLA 225 (376)
T ss_pred -ceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhccccccccc
Confidence 222211110 122344455 4433333 3345666666666554433333334457899
Q ss_pred EcCCCCEEEEEECC--eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 199 FHASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 199 fSPdG~~LAsgSdd--~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
.|||+.+++++-.. +|+-|-+...+.-.......+-.+..-.+.-+++|.+.++-
T Consensus 226 LS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 226 LSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred CCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEE
Confidence 99999999888643 34433343332210000111122222334566888776654
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=68.70 E-value=18 Score=26.42 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=27.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEc
Q 004785 161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200 (730)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafS 200 (730)
+..++++.-.+++|.++|..+++.+..+.-......++|+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 3445555666889999999998888777655545555553
No 447
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=68.65 E-value=1.7e+02 Score=34.80 Aligned_cols=141 Identities=14% Similarity=0.030 Sum_probs=76.8
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCe-----EEEEECCCCeEE
Q 004785 80 ARRGLASWVEA------ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHT-----VKIIDCQTGSCL 142 (730)
Q Consensus 80 ~g~~L~Sgs~D------gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~Dgt-----VrVWDl~tg~~l 142 (730)
++...+.|+.| .++..||..+.+ +...........+ +|.+.|+|+.||. |-.||..+.+-.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 44566677777 357888887653 1111112222222 6888899988854 666776654311
Q ss_pred EEEecCCCCcEEEEEccCCCCEEEEEeCCC------cEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE-CC-
Q 004785 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDH------EVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS-GH- 212 (730)
Q Consensus 143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg------tVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS-dd- 212 (730)
.................++.+.+.|+.|+ +|..||..+++....-. ....-..++. -++.+.++|+ ++
T Consensus 410 -~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 410 -PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGT 487 (571)
T ss_pred -ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCC
Confidence 11111112222332223788888888654 46788888876554422 2221122222 2566677776 32
Q ss_pred ----eEEEEEcCCCcc
Q 004785 213 ----KLYIWRYNMREE 224 (730)
Q Consensus 213 ----~I~VWDl~t~~~ 224 (730)
.|..||..+.+-
T Consensus 488 ~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 488 SALSSVERYDPETNQW 503 (571)
T ss_pred CccceEEEEcCCCCce
Confidence 178888877654
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=30 Score=40.28 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=53.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEE---------CCCCeEEEE---E--------ecCCCCcEEEEEccCC--CCEEE
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIID---------CQTGSCLKV---L--------HGHRRTPWVVRFHPLN--PTIIA 166 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWD---------l~tg~~l~~---l--------~gH~~~V~sVafSP~d--g~lLa 166 (730)
.|..+..|+.|..++-.+.+|.+..+= +++|+.+-. + +...-.+..++|||+. +..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477888999999999999988765432 234432211 1 1111235568999954 46777
Q ss_pred EEeCCCcEEEEECCCCeEEEE
Q 004785 167 SGSLDHEVRLWNASTAECIGS 187 (730)
Q Consensus 167 SgS~DgtVrLWDl~tg~~i~~ 187 (730)
.-+.|.+||+||+...+.+..
T Consensus 185 iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEecCcEEEEEecCCcchhhc
Confidence 778899999999987665543
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=66.45 E-value=62 Score=39.41 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=71.0
Q ss_pred CeEEEEECC--CCCEEEEEeCCCeEEEEECCC-------C----e---------EEEEEecCCCCcEEEEEc--cCCCCE
Q 004785 109 STIAAAFSP--DGKTLASTHGDHTVKIIDCQT-------G----S---------CLKVLHGHRRTPWVVRFH--PLNPTI 164 (730)
Q Consensus 109 ~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t-------g----~---------~l~~l~gH~~~V~sVafS--P~dg~l 164 (730)
.|+-|.... +...|+.+.+||.|.+|.+++ . + +...++ ....+|+++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 355555544 455789999999999997621 0 0 112222 34578999998 6 7788
Q ss_pred EEEEeCCCcEEEEECCCC--eE--EEEecCCCCeEEEEEcCCC-----C-EEEEEE-CCeEEEEEc
Q 004785 165 IASGSLDHEVRLWNASTA--EC--IGSRDFYRPIASIAFHASG-----E-LLAVAS-GHKLYIWRY 219 (730)
Q Consensus 165 LaSgS~DgtVrLWDl~tg--~~--i~~l~h~~~V~sVafSPdG-----~-~LAsgS-dd~I~VWDl 219 (730)
+|.++....|.||-+... +. .....+...|-+|+|-++. . +|++++ .+.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765442 11 1123466788999997643 2 555555 666777666
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=65.80 E-value=21 Score=41.75 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=45.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CeEEEEE--ecC--------------------CCCcEEEEEcc---CCCCEEEE
Q 004785 117 PDGKTLASTHGDHTVKIIDCQT----GSCLKVL--HGH--------------------RRTPWVVRFHP---LNPTIIAS 167 (730)
Q Consensus 117 PDG~~LaSgS~DgtVrVWDl~t----g~~l~~l--~gH--------------------~~~V~sVafSP---~dg~lLaS 167 (730)
.+...|+.+..||.+...+... +...... ..+ ...+..++++. .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888898887777653 2222111 111 12234455544 26789999
Q ss_pred EeCCCcEEEEECCCCeEEEEec
Q 004785 168 GSLDHEVRLWNASTAECIGSRD 189 (730)
Q Consensus 168 gS~DgtVrLWDl~tg~~i~~l~ 189 (730)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 451
>PRK13684 Ycf48-like protein; Provisional
Probab=65.77 E-value=1.6e+02 Score=32.36 Aligned_cols=109 Identities=11% Similarity=0.045 Sum_probs=68.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t 181 (730)
-...++++.+.++++.++.+ ..|.+++=....|..-.....+ ...+..+.+.+ ++.+++ ++.+|.|. .....
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~ 288 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDG 288 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCC
Confidence 34578999999998877665 5677654334555543332222 23467889988 666555 45566554 34444
Q ss_pred CeEEEEec----CCCCeEEEEEcCCCCEEEEEECCeEEEEE
Q 004785 182 AECIGSRD----FYRPIASIAFHASGELLAVASGHKLYIWR 218 (730)
Q Consensus 182 g~~i~~l~----h~~~V~sVafSPdG~~LAsgSdd~I~VWD 218 (730)
|+...... .....+.+.|..+++.+++|..+.|-.|+
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 44433322 22467888888888888888777776664
No 452
>PHA03098 kelch-like protein; Provisional
Probab=64.46 E-value=96 Score=36.06 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=67.9
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCCCC-----CCCCCeEEEEECCCCCEEEEEeCC------CeEEEEECCCCeEE-
Q 004785 80 ARRGLASWVEA-----ESLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCL- 142 (730)
Q Consensus 80 ~g~~L~Sgs~D-----gsIrlWd~~t~~L~-----gH~~~Vt~lafSPDG~~LaSgS~D------gtVrVWDl~tg~~l- 142 (730)
++...+.|+.+ ..+..||..+.+.. .+...-.+++. -++++.+.|+.+ ..+..||..+++=.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 34444445543 34778887765311 11111112222 256777777632 46888998765421
Q ss_pred -EEEecCCCCcEEEEEccCCCCEEEEEeCC--------CcEEEEECCCCeEEEEe--cCCC-CeEEEEEcCCCCEEEEEE
Q 004785 143 -KVLHGHRRTPWVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSR--DFYR-PIASIAFHASGELLAVAS 210 (730)
Q Consensus 143 -~~l~gH~~~V~sVafSP~dg~lLaSgS~D--------gtVrLWDl~tg~~i~~l--~h~~-~V~sVafSPdG~~LAsgS 210 (730)
..+....... ++.. - ++.+++.|+.+ ..+.+||..+++....- .... ....+.+ ++++++.|+
T Consensus 421 ~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 495 (534)
T PHA03098 421 GSPLPISHYGG-CAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG 495 (534)
T ss_pred cCCCCccccCc-eEEE-E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence 1111111111 2222 2 56777777643 23888998877654432 1111 1122222 566666665
Q ss_pred CC------eEEEEEcCCCc
Q 004785 211 GH------KLYIWRYNMRE 223 (730)
Q Consensus 211 dd------~I~VWDl~t~~ 223 (730)
.+ .|.+||..+..
T Consensus 496 ~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CcCCcccceeEEEeCCCCE
Confidence 22 37777776553
No 453
>PHA02713 hypothetical protein; Provisional
Probab=64.22 E-value=1e+02 Score=36.51 Aligned_cols=138 Identities=10% Similarity=-0.054 Sum_probs=72.0
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCC-------------------
Q 004785 80 ARRGLASWVEA-----ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDH------------------- 129 (730)
Q Consensus 80 ~g~~L~Sgs~D-----gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~Dg------------------- 129 (730)
+++..+.|+.+ .++..||..+.+ +.........+.+ +|++.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 34444445443 348889987652 1111111222232 677778887642
Q ss_pred ----eEEEEECCCCe--EEEEEecCCCCcEEEEEccCCCCEEEEEeCC------CcEEEEECCC-CeEEEE--ecCCC-C
Q 004785 130 ----TVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLWNAST-AECIGS--RDFYR-P 193 (730)
Q Consensus 130 ----tVrVWDl~tg~--~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D------gtVrLWDl~t-g~~i~~--l~h~~-~ 193 (730)
+|..||..+.+ .+..+.........+.+ ++.+++.|+.+ ..|..||..+ .+-... +.... .
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778876653 22222111111122223 56777777754 2467899887 444332 22222 2
Q ss_pred eEEEEEcCCCCEEEEEEC-C--eEEEEEcCCCcc
Q 004785 194 IASIAFHASGELLAVASG-H--KLYIWRYNMREE 224 (730)
Q Consensus 194 V~sVafSPdG~~LAsgSd-d--~I~VWDl~t~~~ 224 (730)
...+.+ +|++.++|+. + .+..||..+.+-
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 222333 6777778873 3 277888777653
No 454
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=64.12 E-value=61 Score=40.30 Aligned_cols=88 Identities=6% Similarity=0.058 Sum_probs=59.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEE-EE-CC---e--EEEEEcCCCccccCCeEEecC
Q 004785 163 TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV-AS-GH---K--LYIWRYNMREETSSPRIVLRT 234 (730)
Q Consensus 163 ~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAs-gS-dd---~--I~VWDl~t~~~~~~~~~l~~h 234 (730)
++++.....+.|.+-|......... +.+...|.+-+|||||+.|+. .+ .+ + |++-|+++... .+.++.-.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~--~~vkl~ve 397 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS--GLVKLPVE 397 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC--CceEeecc
Confidence 3333333335788889887666655 778889999999999999998 33 33 3 99999987653 12233333
Q ss_pred CCCeEEEEEccCCCeEEE
Q 004785 235 RRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 235 ~~~V~sVaFSPdG~~Lla 252 (730)
...|-.-....+|...++
T Consensus 398 ~aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 398 NAAIPRWRVLENGDTVIV 415 (912)
T ss_pred cccccceEecCCCCeEEE
Confidence 555666666777776544
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.78 E-value=44 Score=38.36 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=68.3
Q ss_pred CCCEEEEEeCCCeEEEE-ECCCC-e----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC
Q 004785 118 DGKTLASTHGDHTVKII-DCQTG-S----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191 (730)
Q Consensus 118 DG~~LaSgS~DgtVrVW-Dl~tg-~----~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~ 191 (730)
-|.-|..++.||-|.-| |++.+ . .++.++-....+..+.-.. +.+-+++-+..|++.++.-...+.+..-...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 45567888899999887 55432 1 2233332223333332222 4456777788888888765544443333334
Q ss_pred CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004785 192 RPIASIAFHASGELLAVASGHKLYIWRYNMREE 224 (730)
Q Consensus 192 ~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~ 224 (730)
..+.-+++||++.+|++-..++|+++.+++...
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 467789999999999988888899999877653
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.05 E-value=2e+02 Score=31.13 Aligned_cols=114 Identities=11% Similarity=0.189 Sum_probs=67.0
Q ss_pred CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe------CCCcEEEEECCCCeEEEEec-----CCCCeEEE
Q 004785 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS------LDHEVRLWNASTAECIGSRD-----FYRPIASI 197 (730)
Q Consensus 129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS------~DgtVrLWDl~tg~~i~~l~-----h~~~V~sV 197 (730)
..|++||..+.+=...-.+-.+.|..+.|.. +.++++.|. ....+..||+.+.+....-. ..++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 4689999876653333344567899999986 777777764 35568899998765433322 24778888
Q ss_pred EEcC-CCC-EEEEEE--CCe--EEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785 198 AFHA-SGE-LLAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (730)
Q Consensus 198 afSP-dG~-~LAsgS--dd~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (730)
.+.- |+. +.+.|. ++. |..||-.+...... ........|+.+.+-|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~--~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS--DILGSGTTIRGLQVLP 146 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccc--cccCCCCEEEEEEEEe
Confidence 7743 443 444443 222 77787555443221 0222244555555433
No 457
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.99 E-value=1.8e+02 Score=32.19 Aligned_cols=109 Identities=14% Similarity=0.040 Sum_probs=66.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-C
Q 004785 79 DARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-T 151 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~L------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~-~ 151 (730)
..+..++.+..++.|.-.|.++++. ......+..-.+-.+|+ |+.++.++.++.+|..+|+.+..+..... .
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3455566667777777777776641 11112222222333665 77788888999999989998888776551 1
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF 190 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h 190 (730)
+..-.+- ....+...+.|+.+.-.|..+|+.+.....
T Consensus 145 ~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 145 YASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 1111111 223344444789999999999988777543
No 458
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.67 E-value=62 Score=39.61 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=51.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC----------CCeE---EEEE--------ecCCCCcEEEEEccCC--CCE
Q 004785 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----------TGSC---LKVL--------HGHRRTPWVVRFHPLN--PTI 164 (730)
Q Consensus 108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~----------tg~~---l~~l--------~gH~~~V~sVafSP~d--g~l 164 (730)
-.|..+.+|++|++|+..|..+.+.+ .+. .|+. .+.+ ..+...|..+.|||.. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35899999999999999888654333 331 1221 1111 1344578899999942 578
Q ss_pred EEEEeCCCcEEEEECCCC
Q 004785 165 IASGSLDHEVRLWNASTA 182 (730)
Q Consensus 165 LaSgS~DgtVrLWDl~tg 182 (730)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999764
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.43 E-value=1.3 Score=50.48 Aligned_cols=131 Identities=13% Similarity=0.129 Sum_probs=91.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEe-cCCCCcEE
Q 004785 79 DARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLH-GHRRTPWV 154 (730)
Q Consensus 79 d~g~~L~Sgs~DgsIrlWd~~t~~L--~gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~-gH~~~V~s 154 (730)
..+..++.+..+..+..||-..... ...++....++|..+|..++ .+-..+.+.+||+.+... ..+. +-+..-.-
T Consensus 44 ~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sl 122 (615)
T KOG2247|consen 44 PEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL 122 (615)
T ss_pred cCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHH
Confidence 3444577777788888888654422 13455677899998887654 445678999999976431 1121 11111222
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC
Q 004785 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG 211 (730)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd 211 (730)
+.|++ +...++.+...+.+.|++..+.+.+...+ |..++..++|.+.+..+..+++
T Consensus 123 l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 123 LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred Hhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 78998 88888888899999999998887777777 8899999999998876665543
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=60.79 E-value=79 Score=36.93 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=76.6
Q ss_pred EEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCC--------EEEEEeCCCeEEEEECCC-CeEEEEEecCCCCc
Q 004785 86 SWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGK--------TLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTP 152 (730)
Q Consensus 86 Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~--------~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~~~V 152 (730)
.+.+..++...|++.+++. -|.. | -+.|.|+.+ .|+ |-.+..|.-.|.+- |..+.... ....+
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~e-sKdY~ 560 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVE-SKDYK 560 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeee-ehhcc
Confidence 4444555555566555322 2333 2 567777433 333 44445555456532 33232221 11222
Q ss_pred EEEEEcc---CCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004785 153 WVVRFHP---LNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221 (730)
Q Consensus 153 ~sVafSP---~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t 221 (730)
+.-.|+. ....+++.++..|.|++||--.-.....+ .....|..|..+.+|++|.+.+...+-+-|++.
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 2222221 14578999999999999996433322223 366789999999999999888888888888764
No 461
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=60.74 E-value=3.5e+02 Score=32.22 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeEE--EEEecCCCCcEEEEEccCCCCEEEEEeCC------CcEEEEECCCCe
Q 004785 118 DGKTLASTHGD------HTVKIIDCQTGSCL--KVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLWNASTAE 183 (730)
Q Consensus 118 DG~~LaSgS~D------gtVrVWDl~tg~~l--~~l~gH~~~V~sVafSP~dg~lLaSgS~D------gtVrLWDl~tg~ 183 (730)
.+.+++.|+.+ ..|..||..++.-. ..+. ....-.++++. ++.++++|+.| .++..||..+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 45667777766 46888888777422 2222 22223445554 46888999988 357888988877
Q ss_pred EEEEecC--CCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCcc
Q 004785 184 CIGSRDF--YRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREE 224 (730)
Q Consensus 184 ~i~~l~h--~~~V~sVafSPdG~~LAsgS-dd-----~I~VWDl~t~~~ 224 (730)
....-.- ...-.+++ .-+|.+.|+|+ ++ .|..||..+.+-
T Consensus 361 W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred eeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcc
Confidence 4443221 11111111 12577777777 32 288899877653
No 462
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=60.42 E-value=1e+02 Score=35.27 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=58.3
Q ss_pred EEEECCCCCEEEEEeCCCeEEE---EECC-C----CeEEEEEec---CC--CCcEEEEEccC----------CCCEEEEE
Q 004785 112 AAAFSPDGKTLASTHGDHTVKI---IDCQ-T----GSCLKVLHG---HR--RTPWVVRFHPL----------NPTIIASG 168 (730)
Q Consensus 112 ~lafSPDG~~LaSgS~DgtVrV---WDl~-t----g~~l~~l~g---H~--~~V~sVafSP~----------dg~lLaSg 168 (730)
.++.+|++..|+.+..+..|.+ |+.. . +.......+ +. ..|+++.|-|. +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999988877665 6441 1 222222211 21 46777766552 35678889
Q ss_pred eCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcC
Q 004785 169 SLDHEVRLWNASTAECIGS-RDFYRPIASIAFHA 201 (730)
Q Consensus 169 S~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSP 201 (730)
..+|.|++|.. +|..+.. .-|..+|..+....
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999987 4554433 44788888887653
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.81 E-value=67 Score=37.61 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=31.2
Q ss_pred CCeEEEEECC----CCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785 108 RSTIAAAFSP----DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (730)
Q Consensus 108 ~~Vt~lafSP----DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (730)
..+..++++. +..+|++-+.|+++|+||+.+++++..+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3466677776 6789999999999999999999998776543
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=58.81 E-value=2e+02 Score=31.80 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=68.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECC------CCe-EEEEEec-----CCCCcEEEEEccCCCC------------E
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQ------TGS-CLKVLHG-----HRRTPWVVRFHPLNPT------------I 164 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~------tg~-~l~~l~g-----H~~~V~sVafSP~dg~------------l 164 (730)
.-+.|+|+|.+.+-++...-+...+||.. ... .+-.+.. -....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 35689999988877777778899999986 122 2233331 234577888875 333 3
Q ss_pred EEEEeCCCcEEEEECCCCeE-----EEEecC--CCC-eEEEEEcC--CCCEEEEEE--CCeEEEEEcCC
Q 004785 165 IASGSLDHEVRLWNASTAEC-----IGSRDF--YRP-IASIAFHA--SGELLAVAS--GHKLYIWRYNM 221 (730)
Q Consensus 165 LaSgS~DgtVrLWDl~tg~~-----i~~l~h--~~~-V~sVafSP--dG~~LAsgS--dd~I~VWDl~t 221 (730)
++.+++||+|.-|.-.-+.. ...+.. ... ...+++.. .+.+|+.+. .++|.|||-.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 56788999999998543222 122221 122 33455553 356777666 45588887543
No 465
>PRK13615 lipoprotein LpqB; Provisional
Probab=58.10 E-value=2.5e+02 Score=33.41 Aligned_cols=138 Identities=13% Similarity=0.031 Sum_probs=81.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEE--
Q 004785 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS-- 187 (730)
Q Consensus 111 t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~-- 187 (730)
.+++.++|+..+|....++.++++... +.....+. ...+..-.|.+ ++ .+-+.-.+...++..... |+....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~-~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v 411 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDA-QG-YVWSTPASDPRGLVAWGPDGVGHPVAV 411 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcC-CC-CEEEEeCCCceEEEEecCCCceEEeec
Confidence 788999999999888778888888655 22222233 22355667777 44 444443333455544432 333222
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCC-Cc---cc-cCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 188 -RDFYRPIASIAFHASGELLAVASG----HKLYIWRYNM-RE---ET-SSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 188 -l~h~~~V~sVafSPdG~~LAsgSd----d~I~VWDl~t-~~---~~-~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
....+.|..+..|+||-.++.-.+ ++|+|=-+.. +. .+ ..+..+......+.++.|..++...+.+
T Consensus 412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 113468999999999997776542 3465543322 22 12 2222232233488999999999854544
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=57.58 E-value=34 Score=24.83 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=16.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 004785 189 DFYRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 189 ~h~~~V~sVafSPdG~~LAsgS 210 (730)
..........|+|||+.|+..+
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEE
T ss_pred cCCccccCEEEecCCCEEEEEe
Confidence 3455678899999999888887
No 467
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.39 E-value=1.1e+02 Score=37.45 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=46.2
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCcEEEEECCC----------CeE--E-EEe---------cCCCCeEEEEEcCCC---C
Q 004785 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----------AEC--I-GSR---------DFYRPIASIAFHASG---E 204 (730)
Q Consensus 150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t----------g~~--i-~~l---------~h~~~V~sVafSPdG---~ 204 (730)
-.|..|.++| ++.+++-.+..+ |.|-.+.. |+. . +.+ .....|..+.|||.+ .
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4588899999 888888777755 44444421 111 1 111 123478899999974 4
Q ss_pred EEEEE-ECCeEEEEEcCCCc
Q 004785 205 LLAVA-SGHKLYIWRYNMRE 223 (730)
Q Consensus 205 ~LAsg-Sdd~I~VWDl~t~~ 223 (730)
.|++- +|+.+|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 55554 57779999997544
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=56.30 E-value=1.8e+02 Score=31.55 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=63.9
Q ss_pred CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEe------CCCeEEEEECCCCeEEEEEecC-----CCCcEE
Q 004785 90 AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTH------GDHTVKIIDCQTGSCLKVLHGH-----RRTPWV 154 (730)
Q Consensus 90 DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS------~DgtVrVWDl~tg~~l~~l~gH-----~~~V~s 154 (730)
-..|.+||....+ -.+-.+.|+++.|..+.++++.|. ....+..||+.+.. ...+.+- .++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 4568889876553 234567899999986666666663 35578889987764 3344432 367888
Q ss_pred EEEccCCCC-EEEEEe-C--CCcEEEEECCCCeEEEE--ecCCCCeEEEEE
Q 004785 155 VRFHPLNPT-IIASGS-L--DHEVRLWNASTAECIGS--RDFYRPIASIAF 199 (730)
Q Consensus 155 VafSP~dg~-lLaSgS-~--DgtVrLWDl~tg~~i~~--l~h~~~V~sVaf 199 (730)
+.+...+.. +.+.|. . +..|..||-.+...+.. +.....|..+.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 887543443 444443 2 33466676554444333 222334444443
No 469
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=54.70 E-value=75 Score=33.68 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred EEEEECCCCeEEEEEecCCC-CcEEEEEccCCCCEEEEEeC-C--CcEEEEECCC----CeEE---EEecCCCCeEEEEE
Q 004785 131 VKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSL-D--HEVRLWNAST----AECI---GSRDFYRPIASIAF 199 (730)
Q Consensus 131 VrVWDl~tg~~l~~l~gH~~-~V~sVafSP~dg~lLaSgS~-D--gtVrLWDl~t----g~~i---~~l~h~~~V~sVaf 199 (730)
-.+||+.+++.. .+.-... .+.+-.+-+ +++++.+|+. | ..+++++..+ .... ..+......-++.-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 457899887643 3332222 233345677 8899988764 3 3588888654 1111 11344556666777
Q ss_pred cCCCCEEEEEECCe--EEEEEcCCCcc-ccCCeEEec----C-CCCeEEEEEccCCCeEEEEEe---eCCcc
Q 004785 200 HASGELLAVASGHK--LYIWRYNMREE-TSSPRIVLR----T-RRSLRAVHFHPHAAPLLLTAE---VNDLD 260 (730)
Q Consensus 200 SPdG~~LAsgSdd~--I~VWDl~t~~~-~~~~~~l~~----h-~~~V~sVaFSPdG~~Llatgs---vwdl~ 260 (730)
-|||+.|+.|+... ..+|.-..... ......+.. . ...=-.+...|||+.++.+.. ++|..
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~ 197 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYK 197 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCC
Confidence 78999999998543 56665432211 000001111 1 111225677899996666543 44444
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=54.70 E-value=72 Score=31.56 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=23.9
Q ss_pred CcEEEEEccC-----CCCEEEEEeCCCcEEEEECCC
Q 004785 151 TPWVVRFHPL-----NPTIIASGSLDHEVRLWNAST 181 (730)
Q Consensus 151 ~V~sVafSP~-----dg~lLaSgS~DgtVrLWDl~t 181 (730)
.|..++|||. ...+|+....++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 5778999983 245788888899999998663
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=54.28 E-value=4e+02 Score=30.88 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=57.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC---cEEEEEccCCCCEEEEEeC-------------CCcEEE
Q 004785 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT---PWVVRFHPLNPTIIASGSL-------------DHEVRL 176 (730)
Q Consensus 113 lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~---V~sVafSP~dg~lLaSgS~-------------DgtVrL 176 (730)
+.+.++|.+++... ..++.+|.. |+.+..+.--.+. -..+.+-| ++++|+.+.. .-.|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66778998887665 788888874 7666555432221 23477778 7888877661 123666
Q ss_pred EECCCCeEEEEec---C----C---------------------CCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCcc
Q 004785 177 WNASTAECIGSRD---F----Y---------------------RPIASIAFHASGELLAVASG--HKLYIWRYNMREE 224 (730)
Q Consensus 177 WDl~tg~~i~~l~---h----~---------------------~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~ 224 (730)
+| .+|+.+.... | . -.++++.+.+....|++++. +.|...|.++++.
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 67 7777665521 1 0 13789999995565555553 3488888766654
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=53.60 E-value=1.2e+02 Score=33.62 Aligned_cols=71 Identities=18% Similarity=0.027 Sum_probs=46.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC
Q 004785 120 KTLASTHGDHTVKIIDCQTGSCLKVLHGH--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR 192 (730)
Q Consensus 120 ~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~ 192 (730)
..++.+..||.|.-.|..+++.+.....- ...+..-.+.. +++ ++.++.++.++.+|..+|+.+.......
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 34555578889999999998866433222 12233333333 444 6677888899999999999888876544
No 473
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=53.35 E-value=3.2e+02 Score=29.44 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=75.7
Q ss_pred CCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-----CCCcEEEEEccC
Q 004785 89 EAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-----RRTPWVVRFHPL 160 (730)
Q Consensus 89 ~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-----~~~V~sVafSP~ 160 (730)
.++...+||.++-+.. ...+.=..++ .||+.|+.......++++|.++.+.++.++-. -..++-+.|.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 6778889998764211 1122334555 46777877777779999999888777666432 1245667775
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEec-----------C-----CCCeEEEEEcCCCCEEEEEE
Q 004785 161 NPTIIASGSLDHEVRLWNASTAECIGSRD-----------F-----YRPIASIAFHASGELLAVAS 210 (730)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----------h-----~~~V~sVafSPdG~~LAsgS 210 (730)
++.+.+-.-....|...|..+|+.+..+. . ..-.+.|+|+|.++.|.+.+
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 57777777777788999999999887652 0 13478999999888766665
No 474
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=52.77 E-value=7.2 Score=47.61 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=46.1
Q ss_pred EEEEECC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE-----------EccCCCCEEEEEeCCCcEEE
Q 004785 111 IAAAFSP---DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR-----------FHPLNPTIIASGSLDHEVRL 176 (730)
Q Consensus 111 t~lafSP---DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa-----------fSP~dg~lLaSgS~DgtVrL 176 (730)
.-+.|.| +..++..+-.+++|++.+..+... ..|.+|...+..++ .+| ||..|+.++.||.+++
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGF 261 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccce
Confidence 4444444 666777777788888877655432 44556766555433 577 8888888888888888
Q ss_pred EECC
Q 004785 177 WNAS 180 (730)
Q Consensus 177 WDl~ 180 (730)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8765
No 475
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=48.99 E-value=74 Score=38.91 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=57.2
Q ss_pred EEEEEccCCCCEEEEEeCCC-----cEEEEECC---CCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004785 153 WVVRFHPLNPTIIASGSLDH-----EVRLWNAS---TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~Dg-----tVrLWDl~---tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~ 224 (730)
.-++|-| .|..+++-..|| .|.++.-+ .|+.-...+....+..++|+-....|+++..+.|.+|-..+-..
T Consensus 250 ~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred hcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE
Confidence 3489999 888888866554 25555432 22322223344556778898888888888888899997655432
Q ss_pred ccCCeEEecCCCCeEEEEEccCCC
Q 004785 225 TSSPRIVLRTRRSLRAVHFHPHAA 248 (730)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPdG~ 248 (730)
- ......-..+..+.|+|..+
T Consensus 329 Y---LK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 329 Y---LKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred E---EEEeecCCCcceeeeccccC
Confidence 1 11222334567788888654
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=48.75 E-value=66 Score=33.51 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=34.3
Q ss_pred CEEEE-EECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785 204 ELLAV-ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (730)
Q Consensus 204 ~~LAs-gSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat 253 (730)
+.|+. .++.+|.+|++..... .+......-+.|..+.++..|+|+++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~--~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC--PLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC--ceeEEEcchhheeEEEeccccceEEEE
Confidence 44444 5566799999984332 234455566889999999999988874
No 477
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=47.06 E-value=4.1e+02 Score=28.89 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=51.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE-----EEEccCCCCEEEEEeCCCcEEEEECC
Q 004785 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-----VRFHPLNPTIIASGSLDHEVRLWNAS 180 (730)
Q Consensus 110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s-----VafSP~dg~lLaSgS~DgtVrLWDl~ 180 (730)
|+++....+|.+|+|.-.-.+|.+.|-.+|+.+..+.|....=.. .+|-- +.+++-.+..+++|.|+|-.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcCC
Confidence 788898899999999988889999999999999998766221111 23322 34445455678889999873
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.57 E-value=3.6e+02 Score=31.94 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=45.6
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEE-----EE----CCCCeEEEE---ec---------CCCCeEEEEEcCCC----CE
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRL-----WN----ASTAECIGS---RD---------FYRPIASIAFHASG----EL 205 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrL-----WD----l~tg~~i~~---l~---------h~~~V~sVafSPdG----~~ 205 (730)
.|..|..++ .|..++-.+.+|.+.. |- +.+|+.+.. +. ..-.+..++|||+. .+
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 466788888 7777777777875433 21 223433221 11 11145678899976 35
Q ss_pred EEEEECCeEEEEEcCCCccc
Q 004785 206 LAVASGHKLYIWRYNMREET 225 (730)
Q Consensus 206 LAsgSdd~I~VWDl~t~~~~ 225 (730)
++..+|+.|+|||+...+.+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 55556777999999877654
No 479
>PRK13615 lipoprotein LpqB; Provisional
Probab=41.50 E-value=2.9e+02 Score=32.91 Aligned_cols=98 Identities=7% Similarity=0.017 Sum_probs=61.1
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC-CccccCCeE
Q 004785 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNM-REETSSPRI 230 (730)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t-~~~~~~~~~ 230 (730)
.+++.++ ++..++....++.++++... +..... .....+..-+|+++| ++.+.-++. .++..... +.... ...
T Consensus 337 ~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~-~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v~v 411 (557)
T PRK13615 337 DAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLL-DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-VAV 411 (557)
T ss_pred ccceEcC-CCceEEEEcCCceEEEecCC-Ccceee-ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-eec
Confidence 6789999 78888877778888888665 222222 224457778899988 666665443 55555433 22211 101
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEe
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Llatgs 255 (730)
-..-...|..+..|+||.+++.-.+
T Consensus 412 ~~~~~~~I~~lrvSrDG~R~Avi~~ 436 (557)
T PRK13615 412 SWTATGRVVSLEVARDGARVLVQLE 436 (557)
T ss_pred cccCCCeeEEEEeCCCccEEEEEEe
Confidence 1112357999999999998877544
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=40.75 E-value=1.4e+02 Score=32.56 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=72.2
Q ss_pred cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI 230 (730)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~ 230 (730)
...|+-.| ++..-+++...+.|--.|-++|+.... ++....-..|...|||..-++-+...|.-.|-++.+....+..
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence 45677788 888888888888898999999987665 5666677788899999876665544577677666654432223
Q ss_pred EecCCCCeEEEEEccCCCeEEE
Q 004785 231 VLRTRRSLRAVHFHPHAAPLLL 252 (730)
Q Consensus 231 l~~h~~~V~sVaFSPdG~~Lla 252 (730)
............|.++|...++
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFT 164 (353)
T ss_pred cccCCCcccceeeCCCccEEEe
Confidence 3334667888999999985444
No 481
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=40.27 E-value=3.7e+02 Score=29.00 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=67.1
Q ss_pred eEEEEECCCCeEEEEEecC------CCCcEEEEEccCCC----CE-EEEEeCCCcEEEEECCCCeEEEEecC--------
Q 004785 130 TVKIIDCQTGSCLKVLHGH------RRTPWVVRFHPLNP----TI-IASGSLDHEVRLWNASTAECIGSRDF-------- 190 (730)
Q Consensus 130 tVrVWDl~tg~~l~~l~gH------~~~V~sVafSP~dg----~l-LaSgS~DgtVrLWDl~tg~~i~~l~h-------- 190 (730)
+|.+||+.+++.++++.-. ...+..+.+...++ .+ +++=+..+-|.++|+.+++..+.+.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6788899999888777432 23456677765222 23 33434456899999999887555421
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEECCeEEEEEcCCC-----cc---c--cCCeEEecC-CCCeEEEEEc
Q 004785 191 ------------YRPIASIAFHA---SGELLAVASGHKLYIWRYNMR-----EE---T--SSPRIVLRT-RRSLRAVHFH 244 (730)
Q Consensus 191 ------------~~~V~sVafSP---dG~~LAsgSdd~I~VWDl~t~-----~~---~--~~~~~l~~h-~~~V~sVaFS 244 (730)
...+..++.+| +|++|+...=.+-++|.+.+. .. . .......+. ......++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 23466777765 777888776333334433322 11 0 001112222 2355677788
Q ss_pred cCCCeEEE
Q 004785 245 PHAAPLLL 252 (730)
Q Consensus 245 PdG~~Lla 252 (730)
++|..+++
T Consensus 195 ~~G~ly~~ 202 (287)
T PF03022_consen 195 PNGNLYFT 202 (287)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 87775444
No 482
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=38.27 E-value=7.8e+02 Score=29.55 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=38.9
Q ss_pred EecCCCCcEEEEEccCCCCEEEEEeCCC----cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEE
Q 004785 145 LHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV 208 (730)
Q Consensus 145 l~gH~~~V~sVafSP~dg~lLaSgS~Dg----tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAs 208 (730)
+..+...+..+.|+| ++..++..+.++ .+++.+.. + ....+...+....|+|+|+.++.
T Consensus 55 ~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~l~l~~~~-g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSP-DGSVLAFVSTDGGRVAQLYLVDVG-G---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCC-CCCEEEEEeccCCCcceEEEEecC-C---ceeeeecccccceeCCCCCeEEE
Confidence 345667788899999 777777666333 23444444 3 23334566778889999987777
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=38.16 E-value=1.5e+02 Score=26.40 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=31.3
Q ss_pred CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM 221 (730)
Q Consensus 172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t 221 (730)
+.|..||..+ .......-...+.|.++|++++|++++ .+.|++|....
T Consensus 36 ~~Vvyyd~~~--~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE--eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3455666532 222222334567899999999999988 45599997653
No 484
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=38.06 E-value=3.5e+02 Score=34.00 Aligned_cols=123 Identities=10% Similarity=0.111 Sum_probs=77.0
Q ss_pred CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCC
Q 004785 212 HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSS 291 (730)
Q Consensus 212 d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d 291 (730)
++|.+-|+....... ....+...|.+-.|||||++++.+.+.-.+. |. +.|++.++.+..
T Consensus 329 ~~L~~~D~dG~n~~~---ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~------------g~-----s~vYv~~L~t~~ 388 (912)
T TIGR02171 329 GNLAYIDYTKGASRA---VEIEDTISVYHPDISPDGKKVAFCTGIEGLP------------GK-----SSVYVRNLNASG 388 (912)
T ss_pred CeEEEEecCCCCceE---EEecCCCceecCcCCCCCCEEEEEEeecCCC------------CC-----ceEEEEehhccC
Confidence 368888887765422 2267788999999999999998754433322 22 356666555443
Q ss_pred CCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCCCCcccee
Q 004785 292 HPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVL 358 (730)
Q Consensus 292 ~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~~q~~~~v 358 (730)
...+.-......+|-|.+ ...|..++++..+....++...+ ..-++=+++|.+..-+++..++
T Consensus 389 ~~~vkl~ve~aaiprwrv--~e~gdt~ivyv~~a~nn~d~~~~--~~~stw~v~f~~gkfg~p~kl~ 451 (912)
T TIGR02171 389 SGLVKLPVENAAIPRWRV--LENGDTVIVYVSDASNNKDDATF--AAYSTWQVPFANGKFGTPKKLF 451 (912)
T ss_pred CCceEeecccccccceEe--cCCCCeEEEEEcCCCCCcchhhh--hhcceEEEEecCCCCCCchhhh
Confidence 322222222334555532 46788888888877665555444 3345567778888888888777
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=37.90 E-value=6.5e+02 Score=28.58 Aligned_cols=171 Identities=10% Similarity=0.076 Sum_probs=89.8
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCC-CCCeEEEEEC----CCCCE--EEEEeC-C---CeEEEEECC--CCeEEEEEec--
Q 004785 83 GLASWVEAESLHHLRPKYCPLSPP-PRSTIAAAFS----PDGKT--LASTHG-D---HTVKIIDCQ--TGSCLKVLHG-- 147 (730)
Q Consensus 83 ~L~Sgs~DgsIrlWd~~t~~L~gH-~~~Vt~lafS----PDG~~--LaSgS~-D---gtVrVWDl~--tg~~l~~l~g-- 147 (730)
.|+.-.+++-+.+||++-..+... .+.++.+..- -+|+. |+.+++ + .+|++|.+. ++. +..+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~ 148 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPA 148 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCC
Confidence 333444445566666654432211 1333333322 13443 555554 2 479999764 443 443322
Q ss_pred -----CCCCcEEEEEc--cCCCC-EEEEEeCCCcEEEEECC---CC----eEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 004785 148 -----HRRTPWVVRFH--PLNPT-IIASGSLDHEVRLWNAS---TA----ECIGSRDFYRPIASIAFHASGELLAVASGH 212 (730)
Q Consensus 148 -----H~~~V~sVafS--P~dg~-lLaSgS~DgtVrLWDl~---tg----~~i~~l~h~~~V~sVafSPdG~~LAsgSdd 212 (730)
-...++.+++. +.++. +++....+|.+..|-+. .+ +.++.+.....+..+..+....+|+.+-.+
T Consensus 149 ~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 149 APIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp C-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT
T ss_pred cccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc
Confidence 11346677763 43444 55667888988877664 33 456777888899999999998999999865
Q ss_pred e-EEEEEcCCCccccCCeE-Ee-c--CCCCeEEEEEc--cCCC-eEEEEE
Q 004785 213 K-LYIWRYNMREETSSPRI-VL-R--TRRSLRAVHFH--PHAA-PLLLTA 254 (730)
Q Consensus 213 ~-I~VWDl~t~~~~~~~~~-l~-~--h~~~V~sVaFS--PdG~-~Llatg 254 (730)
. |+-|+.+-......... .. + ....|..|++- .+|+ ||++++
T Consensus 229 ~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSs 278 (381)
T PF02333_consen 229 VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSS 278 (381)
T ss_dssp TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEE
T ss_pred cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEc
Confidence 4 88888764432211111 11 1 24567777764 3454 455554
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=37.76 E-value=69 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=19.8
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEE
Q 004785 121 TLASTHGDHTVKIIDCQTGSCLKVL 145 (730)
Q Consensus 121 ~LaSgS~DgtVrVWDl~tg~~l~~l 145 (730)
.++.++.++.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888899999999888876543
No 487
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=37.38 E-value=22 Score=35.67 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=17.1
Q ss_pred CCCceeeee-ccceEEEEEecCC
Q 004785 684 VGGGLVYGT-KEGKLRILQFDGS 705 (730)
Q Consensus 684 ~~~~~~~~~-~~~~~~~~~~~~~ 705 (730)
-+|=||||| |||||.|--+=|.
T Consensus 115 N~GKIVYGtvkdGkLeVqG~VGE 137 (189)
T PF04651_consen 115 NCGKIVYGTVKDGKLEVQGTVGE 137 (189)
T ss_pred cCCcEEEEEeecCeEEeeeeecc
Confidence 478899998 8999988665553
No 488
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=37.20 E-value=7.6e+02 Score=31.71 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=78.4
Q ss_pred EEEEeCCCCC------CC--CCCCCeEEEEECCCCC--EEEEEeC-----------CCeEEEEEC-CCCeEEEEEecCCC
Q 004785 93 LHHLRPKYCP------LS--PPPRSTIAAAFSPDGK--TLASTHG-----------DHTVKIIDC-QTGSCLKVLHGHRR 150 (730)
Q Consensus 93 IrlWd~~t~~------L~--gH~~~Vt~lafSPDG~--~LaSgS~-----------DgtVrVWDl-~tg~~l~~l~gH~~ 150 (730)
|++.|...++ +. .-.-.|..+.|+.... +++.+.. ++.++.|++ +.|+.+..+..-.-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 6777766542 11 1223467777776333 3444432 344666665 33444433321111
Q ss_pred CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (730)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~ 226 (730)
.-.-.+..| -..++++ +....+++||+...+.++... ....|..+.+ .+..+++|. .+.|+++.++.....-
T Consensus 935 ~~~v~Ai~~-f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 935 PGPVGAICP-FQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CccceEEec-cCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence 112356677 3344443 445689999998877665543 2445666666 467788887 4456665554443211
Q ss_pred CCeEEec--CCCCeEEEEEccCCC
Q 004785 227 SPRIVLR--TRRSLRAVHFHPHAA 248 (730)
Q Consensus 227 ~~~~l~~--h~~~V~sVaFSPdG~ 248 (730)
..+.. -...|+.+.+-..+.
T Consensus 1011 --~~fadD~~pR~Vt~~~~lD~~t 1032 (1205)
T KOG1898|consen 1011 --IVFADDPVPRHVTALELLDYDT 1032 (1205)
T ss_pred --EEEeCCCccceeeEEEEecCCc
Confidence 11211 245666666655554
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=36.04 E-value=1.1e+02 Score=22.08 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=18.9
Q ss_pred EecCCCCcEEEEEccCCCCEEEEEeCC--CcEEEE
Q 004785 145 LHGHRRTPWVVRFHPLNPTIIASGSLD--HEVRLW 177 (730)
Q Consensus 145 l~gH~~~V~sVafSP~dg~lLaSgS~D--gtVrLW 177 (730)
+....+.-....|+|++..++.+...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344455677899999444455555556 666555
No 490
>PHA02790 Kelch-like protein; Provisional
Probab=34.94 E-value=7.7e+02 Score=28.50 Aligned_cols=124 Identities=10% Similarity=-0.002 Sum_probs=62.7
Q ss_pred eEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC--CeEEEEECCCCeE--EEEEecCCCCcEEEEEccCC
Q 004785 92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD--HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN 161 (730)
Q Consensus 92 sIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D--gtVrVWDl~tg~~--l~~l~gH~~~V~sVafSP~d 161 (730)
++..||..+.+ +.........+. -+|+..+.|+.+ .++..||..+++= +..+.........+.+ +
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---N 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---C
Confidence 57778877642 111111122222 367777777753 4578888765531 1122211111222222 6
Q ss_pred CCEEEEEeCCC---cEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785 162 PTIIASGSLDH---EVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (730)
Q Consensus 162 g~lLaSgS~Dg---tVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~ 223 (730)
+++.+.|+.++ ++..||..+.+-...-. ....-.+++ .-+|++.+.|+ .+.+||..+.+
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG--~~e~ydp~~~~ 426 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR--NAEFYCESSNT 426 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC--ceEEecCCCCc
Confidence 78888887653 47788988765543321 111111221 23455555553 46678876654
No 491
>PRK13614 lipoprotein LpqB; Provisional
Probab=34.53 E-value=8.2e+02 Score=29.33 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=77.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCcEEEEEccCCCCEEEEEeCCC--cEEEEECC-CCe-
Q 004785 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNAS-TAE- 183 (730)
Q Consensus 109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V~sVafSP~dg~lLaSgS~Dg--tVrLWDl~-tg~- 183 (730)
.+..++.+++++.++....|+. .+|-...+.... .+.+. .++.-.|.+ ++ .+-+.-.+. .|....-. +++
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccc
Confidence 6788999999999988877762 333322233332 33332 356667777 44 343443333 44443321 211
Q ss_pred ------EEEEecCCC-CeEEEEEcCCCCEEEEEE--CCe--EEEEEcC---CCc--cccCCeEEecCCCCeEEEEEccCC
Q 004785 184 ------CIGSRDFYR-PIASIAFHASGELLAVAS--GHK--LYIWRYN---MRE--ETSSPRIVLRTRRSLRAVHFHPHA 247 (730)
Q Consensus 184 ------~i~~l~h~~-~V~sVafSPdG~~LAsgS--dd~--I~VWDl~---t~~--~~~~~~~l~~h~~~V~sVaFSPdG 247 (730)
.+..-...+ .|..+..|+||-.++.-. +++ |+|=-+. .+. .+..+..+ .....+.++.|..++
T Consensus 419 ~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 419 AQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDS 497 (573)
T ss_pred ccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCC
Confidence 111111233 599999999999777655 554 6654442 222 12112222 334688999999999
Q ss_pred CeEEEEE
Q 004785 248 APLLLTA 254 (730)
Q Consensus 248 ~~Llatg 254 (730)
..++.+.
T Consensus 498 sl~V~~~ 504 (573)
T PRK13614 498 TVVVTKA 504 (573)
T ss_pred EEEEEec
Confidence 8555543
No 492
>PF07932 DAP_C: D-aminopeptidase, domain C; InterPro: IPR012857 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. D-aminopeptidase (Q9ZBA9 from SWISSPROT) is a dimeric enzyme with each monomer being composed of three domains. Domain C is organised to form a beta barrel made up of eight antiparallel beta strands. It is connected to domain B by a short linker sequence, and interacts extensively with the domain A, the catalytic domain. The gamma loop of domain C forms part of the wall of the catalytic pocket; domain C is in fact thought to confer substrate and inhibitor specificity to the enzyme. This domain is found in peptidases that belong to MEROPS peptidase family S12 (D-Ala-D-Ala carboxypeptidase B family, clan ME).; GO: 0004177 aminopeptidase activity; PDB: 1EI5_A.
Probab=34.46 E-value=14 Score=33.20 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=24.3
Q ss_pred CceeeeeecccCCCceeeeeccceE-----EEEEecCCC
Q 004785 673 DEVNVACFHPSVGGGLVYGTKEGKL-----RILQFDGSY 706 (730)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 706 (730)
+|++ |-||=..-+|++||+-+|-| ..|+|-+.+
T Consensus 12 ~Eld-s~~~~~~~gG~~yg~F~GfLG~gp~~~m~~lg~D 49 (97)
T PF07932_consen 12 AELD-STFHCEARGGMLYGAFDGFLGKGPMEPMRYLGDD 49 (97)
T ss_dssp TTTT-EEEEEEEETTEEEEEEEETTEE---EE-EEEETT
T ss_pred hhhC-cEEEEEeCCCeEEEEeecccCCCchhhhhhcCCc
Confidence 5666 88888999999999998765 455555443
No 493
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=34.38 E-value=5.3e+02 Score=27.90 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCC--CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE----
Q 004785 111 IAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---- 184 (730)
Q Consensus 111 t~lafSPDG~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---- 184 (730)
....+.-++++|+.|.++| +++.|... ++..+.+ +...|..+...+..+-+++-++....++.+|+..-..
T Consensus 5 ~~~~~~~~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~ 81 (302)
T smart00036 5 WNHPITCDGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEA 81 (302)
T ss_pred EccccccCCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhc
Q ss_pred ------------EEEecCCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCC
Q 004785 185 ------------IGSRDFYRPIASIAFHASGE--LLAVASGHKLYIWRYNM 221 (730)
Q Consensus 185 ------------i~~l~h~~~V~sVafSPdG~--~LAsgSdd~I~VWDl~t 221 (730)
...+.+.....-.+..-... ++..+...+|.++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~ 132 (302)
T smart00036 82 LGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN 132 (302)
T ss_pred cCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
No 494
>PHA02790 Kelch-like protein; Provisional
Probab=34.28 E-value=7.8e+02 Score=28.42 Aligned_cols=135 Identities=8% Similarity=0.016 Sum_probs=66.2
Q ss_pred CCCEEEEEeCC--CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEE--EEEe
Q 004785 80 ARRGLASWVEA--ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCL--KVLH 146 (730)
Q Consensus 80 ~g~~L~Sgs~D--gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l--~~l~ 146 (730)
++...+.|+.+ .++..||..+.+ +.........+.+ +|+..+.|+.+ ..+..||..+.+=. ..+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 33444444432 468888876542 2111111222222 67777887764 34777887665311 1111
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------CeEEEEE
Q 004785 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWR 218 (730)
Q Consensus 147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgSd------d~I~VWD 218 (730)
........+.+ ++.+++.|+ .+.+||..+++-...- .....-.+++. -+|++.++|+. +.+.+||
T Consensus 396 ~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEE
Confidence 11111122222 567777764 4778998876654332 22221122222 25676666662 1266677
Q ss_pred cCCCc
Q 004785 219 YNMRE 223 (730)
Q Consensus 219 l~t~~ 223 (730)
..+.+
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 66543
No 495
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=34.01 E-value=9.7 Score=36.72 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCccceeccCCCCCCCCCCCCCCccccccccccCCchhhcccccccc
Q 004785 352 GQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD 398 (730)
Q Consensus 352 ~q~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (730)
++++..| ++|+..++.++.++++++.+..+++++..||...
T Consensus 29 gKGD~~i------r~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK~~ 69 (136)
T PF08954_consen 29 GKGDGNI------RYYEVSDESPYLHYLSEYRSPEPQKGFAFLPKRA 69 (136)
T ss_dssp ETT-S-E------EEEEE-SSTTSEEEEEEE--SS--SEEEE--GGG
T ss_pred eccCcEE------EEEEEcCCCCceEEccccccCCCeEeeEecCccc
Confidence 4445555 6777788888999999999999999988887665
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=33.98 E-value=88 Score=33.16 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=47.6
Q ss_pred EEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC----ccccCCeEEecCCCCeEEEEEc
Q 004785 174 VRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR----EETSSPRIVLRTRRSLRAVHFH 244 (730)
Q Consensus 174 VrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~----~~~~~~~~l~~h~~~V~sVaFS 244 (730)
-.+||+.+++..... ...--..+-.|-+||++|.+|++ + .+++++.... +....... ....++=-.+.--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccccceEC
Confidence 357899887654432 22223334457899999999984 2 2999987551 11110111 1223344455667
Q ss_pred cCCCeEEEEEee
Q 004785 245 PHAAPLLLTAEV 256 (730)
Q Consensus 245 PdG~~Llatgsv 256 (730)
|||+.++.++..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 899977777754
No 497
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=33.39 E-value=16 Score=24.60 Aligned_cols=9 Identities=56% Similarity=0.984 Sum_probs=7.3
Q ss_pred ccCCcccee
Q 004785 572 HFSPCGRYL 580 (730)
Q Consensus 572 ~~~~~~~~~ 580 (730)
=|||.||.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 499999974
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.78 E-value=5.4e+02 Score=31.80 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (730)
Q Consensus 106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i 185 (730)
....++++.-+|.|+-++.++.||.|++|+....+..+... ...+-..+.|.. .-+++...|..+.-|.- .|...
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn---hgl~~~tsdrr~la~~~-dgvvq 87 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN---HGLVTATSDRRALAWKE-DGVVQ 87 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec---cceEEEeccchhheeec-cCcch
Confidence 34557788888999999999999999999986544322221 112333455533 33666677777777753 34333
Q ss_pred EEec----CCCCeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004785 186 GSRD----FYRPIASIAFHASGELLAVASGHKLYIWRY 219 (730)
Q Consensus 186 ~~l~----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl 219 (730)
+.+. ......++..+|..+-++-.--++|.-+|.
T Consensus 88 qqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence 3333 223455566666544332111233444543
No 499
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=31.99 E-value=6.8e+02 Score=26.98 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=80.0
Q ss_pred CCeEEEEeCCCCCCCCCCCCeEEEEECCC-C----CEEEEE-eCCCeEEEEECCCCeEEEEEecCCC-------------
Q 004785 90 AESLHHLRPKYCPLSPPPRSTIAAAFSPD-G----KTLAST-HGDHTVKIIDCQTGSCLKVLHGHRR------------- 150 (730)
Q Consensus 90 DgsIrlWd~~t~~L~gH~~~Vt~lafSPD-G----~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~------------- 150 (730)
++.++.+.+....+. ....+..+.+... + .+.+.+ +...-|.|+|+.+++..+.+..+..
T Consensus 44 ~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~ 122 (287)
T PF03022_consen 44 NQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGE 122 (287)
T ss_dssp TCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTE
T ss_pred CcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCc
Confidence 334444444333233 4556888888762 2 233333 2346899999999987666643321
Q ss_pred ------CcEEEEEccC--CCCEEEEEeCCCcEEEEECCC-----Ce---------EEEEecCC-CCeEEEEEcCCCCEEE
Q 004785 151 ------TPWVVRFHPL--NPTIIASGSLDHEVRLWNAST-----AE---------CIGSRDFY-RPIASIAFHASGELLA 207 (730)
Q Consensus 151 ------~V~sVafSP~--dg~lLaSgS~DgtVrLWDl~t-----g~---------~i~~l~h~-~~V~sVafSPdG~~LA 207 (730)
.+..++.+|. +++.|+-....+ -++|-+.+ .. .+..++.+ .....++++++|.+++
T Consensus 123 ~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~ 201 (287)
T PF03022_consen 123 SFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYF 201 (287)
T ss_dssp EEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEE
T ss_pred eEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEE
Confidence 1333444331 112333222211 11221111 00 11222222 3556788899888666
Q ss_pred EEE-CCeEEEEEcCCCccccCCeEEecC---CCCeEEEEEcc--CCCeEEEEEeeCC
Q 004785 208 VAS-GHKLYIWRYNMREETSSPRIVLRT---RRSLRAVHFHP--HAAPLLLTAEVND 258 (730)
Q Consensus 208 sgS-dd~I~VWDl~t~~~~~~~~~l~~h---~~~V~sVaFSP--dG~~Llatgsvwd 258 (730)
+-- .+.|..|+..+.-.......+... -..+..+.+.+ +|...+.+.....
T Consensus 202 ~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 202 TDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp EECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--S
T ss_pred ecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchH
Confidence 655 455999998873322111222222 24678999999 8887777665443
No 500
>PLN02153 epithiospecifier protein
Probab=31.63 E-value=7e+02 Score=27.05 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=34.7
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCeEEEEEecC------CCCcEEEEEccCCCCEEEEEeCC---------
Q 004785 118 DGKTLASTHGD-----------HTVKIIDCQTGSCLKVLHGH------RRTPWVVRFHPLNPTIIASGSLD--------- 171 (730)
Q Consensus 118 DG~~LaSgS~D-----------gtVrVWDl~tg~~l~~l~gH------~~~V~sVafSP~dg~lLaSgS~D--------- 171 (730)
++++++.|+.+ ..|.+||..+.+ -..+... ......+.+ ++++++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~-W~~l~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~gG~~ 212 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK-WVQLPDPGENFEKRGGAGFAVV---QGKIWVVYGFATSILPGGKS 212 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCe-EeeCCCCCCCCCCCCcceEEEE---CCeEEEEeccccccccCCcc
Confidence 56677777653 257788887653 2222211 111112222 45666655432
Q ss_pred ----CcEEEEECCCCeEEE
Q 004785 172 ----HEVRLWNASTAECIG 186 (730)
Q Consensus 172 ----gtVrLWDl~tg~~i~ 186 (730)
..|.+||..+.+-..
T Consensus 213 ~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 213 DYESNAVQFFDPASGKWTE 231 (341)
T ss_pred ceecCceEEEEcCCCcEEe
Confidence 458889988776543
Done!