Query 004787
Match_columns 730
No_of_seqs 397 out of 2529
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 12:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2198 tRNA cytosine-5-methyl 100.0 8.9E-68 1.9E-72 562.8 18.9 283 1-300 78-362 (375)
2 PRK11933 yebU rRNA (cytosine-C 100.0 2.1E-52 4.5E-57 468.6 33.3 380 17-647 60-444 (470)
3 COG0144 Sun tRNA and rRNA cyto 100.0 1.7E-52 3.6E-57 456.5 21.6 182 56-263 134-315 (355)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 4.5E-49 9.8E-54 417.6 14.8 181 56-264 63-247 (283)
5 KOG1122 tRNA and rRNA cytosine 100.0 3.6E-47 7.9E-52 408.3 13.8 193 43-268 211-403 (460)
6 TIGR00446 nop2p NOL1/NOP2/sun 100.0 9.7E-45 2.1E-49 380.9 20.2 172 56-256 49-220 (264)
7 PRK14903 16S rRNA methyltransf 100.0 1.3E-41 2.9E-46 379.7 22.2 179 56-263 215-393 (431)
8 PRK14901 16S rRNA methyltransf 100.0 4.1E-40 9E-45 368.3 19.5 201 17-255 204-404 (434)
9 TIGR00563 rsmB ribosomal RNA s 100.0 2.5E-39 5.3E-44 361.3 21.2 171 56-255 216-388 (426)
10 PRK14904 16S rRNA methyltransf 100.0 4.1E-38 8.8E-43 353.3 21.5 177 55-262 227-403 (445)
11 PRK14902 16S rRNA methyltransf 100.0 5.7E-38 1.2E-42 352.0 22.6 203 17-263 204-406 (444)
12 PRK10901 16S rRNA methyltransf 100.0 1.8E-36 3.8E-41 338.5 21.2 197 16-255 196-392 (427)
13 KOG2360 Proliferation-associat 100.0 7.2E-30 1.6E-34 272.8 12.2 180 54-261 189-370 (413)
14 COG2242 CobL Precorrin-6B meth 99.5 7.6E-14 1.6E-18 138.8 14.9 139 68-265 24-163 (187)
15 PRK15128 23S rRNA m(5)C1962 me 99.5 3.7E-14 7.9E-19 157.6 13.6 185 19-264 182-370 (396)
16 COG1092 Predicted SAM-dependen 99.5 4.2E-13 9.1E-18 148.1 13.3 170 51-263 193-366 (393)
17 PRK00377 cbiT cobalt-precorrin 99.4 7.4E-12 1.6E-16 126.3 14.2 140 69-264 31-171 (198)
18 TIGR00537 hemK_rel_arch HemK-r 99.4 1.8E-11 3.9E-16 121.3 16.0 155 69-262 10-164 (179)
19 PF10672 Methyltrans_SAM: S-ad 99.3 2.3E-12 4.9E-17 137.3 8.9 161 18-243 84-246 (286)
20 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.5E-11 3.2E-16 146.2 15.0 162 54-263 517-680 (702)
21 TIGR01177 conserved hypothetic 99.3 3.2E-11 7E-16 131.0 14.7 131 64-239 162-298 (329)
22 PF13659 Methyltransf_26: Meth 99.3 1.3E-11 2.8E-16 112.8 8.8 116 79-237 1-117 (117)
23 PRK14967 putative methyltransf 99.3 1.6E-10 3.5E-15 118.7 17.1 149 74-262 32-183 (223)
24 PF12847 Methyltransf_18: Meth 99.2 1E-10 2.2E-15 105.8 12.7 110 78-236 1-112 (112)
25 TIGR03704 PrmC_rel_meth putati 99.2 1.9E-10 4.1E-15 120.8 16.5 150 78-262 86-239 (251)
26 PF05175 MTS: Methyltransferas 99.2 9.2E-11 2E-15 115.7 10.5 144 65-262 18-161 (170)
27 PTZ00146 fibrillarin; Provisio 99.2 4.5E-10 9.7E-15 119.8 14.6 108 74-234 128-236 (293)
28 TIGR03533 L3_gln_methyl protei 99.2 1.2E-09 2.7E-14 116.6 18.1 143 76-255 119-266 (284)
29 COG2226 UbiE Methylase involve 99.1 1.6E-10 3.6E-15 120.1 10.9 120 73-246 46-165 (238)
30 PRK07402 precorrin-6B methylas 99.1 4.2E-10 9.1E-15 113.2 13.4 144 61-263 23-168 (196)
31 PRK04266 fibrillarin; Provisio 99.1 7.5E-10 1.6E-14 114.6 14.4 108 74-234 68-175 (226)
32 TIGR03534 RF_mod_PrmC protein- 99.1 1.4E-09 3E-14 112.4 16.4 143 78-255 87-233 (251)
33 PF01209 Ubie_methyltran: ubiE 99.1 1.4E-10 2.9E-15 120.7 8.8 129 72-254 41-169 (233)
34 TIGR00080 pimt protein-L-isoas 99.1 7.6E-10 1.6E-14 113.1 13.0 106 72-234 71-176 (215)
35 TIGR00138 gidB 16S rRNA methyl 99.1 2.3E-09 5E-14 107.3 15.5 157 46-263 3-167 (181)
36 PRK08287 cobalt-precorrin-6Y C 99.1 1.2E-09 2.5E-14 109.1 13.4 127 69-255 22-148 (187)
37 PF08704 GCD14: tRNA methyltra 99.1 7.1E-10 1.5E-14 116.1 12.2 140 55-255 19-163 (247)
38 PRK14968 putative methyltransf 99.1 4.5E-09 9.7E-14 103.6 16.7 146 73-255 18-165 (188)
39 PRK11805 N5-glutamine S-adenos 99.1 1.6E-09 3.5E-14 117.0 14.1 139 80-255 135-278 (307)
40 PF01135 PCMT: Protein-L-isoas 99.1 6.8E-10 1.5E-14 113.7 10.6 105 72-233 66-170 (209)
41 PRK09328 N5-glutamine S-adenos 99.0 5.2E-09 1.1E-13 109.9 16.4 146 75-255 105-254 (275)
42 TIGR02469 CbiT precorrin-6Y C5 99.0 4.4E-09 9.6E-14 96.2 13.4 109 73-235 14-122 (124)
43 PRK13942 protein-L-isoaspartat 99.0 2.2E-09 4.7E-14 109.9 11.9 84 72-184 70-153 (212)
44 PRK00121 trmB tRNA (guanine-N( 99.0 3.1E-09 6.7E-14 107.9 12.5 127 78-252 40-167 (202)
45 PRK00107 gidB 16S rRNA methylt 99.0 1.2E-08 2.5E-13 102.9 16.5 121 77-258 44-164 (187)
46 COG2519 GCD14 tRNA(1-methylade 99.0 3.5E-09 7.6E-14 110.1 11.9 137 56-255 74-212 (256)
47 COG2518 Pcm Protein-L-isoaspar 99.0 3.4E-09 7.4E-14 107.8 11.4 105 70-234 64-168 (209)
48 TIGR00536 hemK_fam HemK family 99.0 1.3E-08 2.9E-13 108.5 16.4 139 78-252 114-257 (284)
49 PRK03522 rumB 23S rRNA methylu 99.0 3.2E-09 6.9E-14 114.9 11.3 108 75-239 170-277 (315)
50 TIGR00438 rrmJ cell division p 98.9 1.1E-08 2.5E-13 102.1 14.1 119 74-235 28-146 (188)
51 PRK13944 protein-L-isoaspartat 98.9 9.2E-09 2E-13 104.6 12.9 106 72-234 66-172 (205)
52 TIGR02752 MenG_heptapren 2-hep 98.9 9.4E-09 2E-13 105.4 12.6 112 73-235 40-151 (231)
53 TIGR00479 rumA 23S rRNA (uraci 98.9 1.4E-08 2.9E-13 114.5 14.3 110 74-238 288-398 (431)
54 PRK00312 pcm protein-L-isoaspa 98.9 1.5E-08 3.3E-13 103.0 12.8 105 72-236 72-176 (212)
55 PRK13168 rumA 23S rRNA m(5)U19 98.9 8.4E-09 1.8E-13 116.7 12.0 88 74-189 293-380 (443)
56 PRK11873 arsM arsenite S-adeno 98.9 1.4E-08 3.1E-13 107.1 12.6 115 72-237 71-185 (272)
57 PF13847 Methyltransf_31: Meth 98.9 1.7E-08 3.8E-13 97.2 12.0 111 77-237 2-112 (152)
58 PRK14966 unknown domain/N5-glu 98.9 5.2E-08 1.1E-12 108.7 16.6 145 76-255 249-397 (423)
59 PLN02233 ubiquinone biosynthes 98.8 3.4E-08 7.3E-13 104.3 13.7 116 72-238 67-185 (261)
60 TIGR00091 tRNA (guanine-N(7)-) 98.8 1.7E-08 3.6E-13 101.8 9.9 117 78-235 16-132 (194)
61 COG1041 Predicted DNA modifica 98.8 1.8E-08 3.8E-13 109.3 10.7 120 72-236 191-311 (347)
62 PRK15001 SAM-dependent 23S rib 98.8 7.9E-08 1.7E-12 106.6 16.1 135 56-238 204-343 (378)
63 COG4123 Predicted O-methyltran 98.8 2.5E-08 5.5E-13 104.2 11.4 153 67-255 33-186 (248)
64 PRK09489 rsmC 16S ribosomal RN 98.8 7.6E-08 1.6E-12 105.6 15.7 129 64-242 182-310 (342)
65 PRK11188 rrmJ 23S rRNA methylt 98.8 4.8E-08 1E-12 99.9 13.1 130 76-253 49-180 (209)
66 COG2263 Predicted RNA methylas 98.8 1.1E-07 2.5E-12 95.0 14.9 127 73-261 40-166 (198)
67 COG2890 HemK Methylase of poly 98.8 1.4E-07 3E-12 100.8 16.4 145 81-263 113-261 (280)
68 PF02475 Met_10: Met-10+ like- 98.8 2E-08 4.3E-13 102.2 9.2 101 76-233 99-200 (200)
69 PRK01544 bifunctional N5-gluta 98.7 1.7E-07 3.7E-12 107.9 15.8 143 78-255 138-285 (506)
70 COG2265 TrmA SAM-dependent met 98.7 4.3E-08 9.4E-13 110.4 10.7 90 72-190 287-376 (432)
71 PRK13943 protein-L-isoaspartat 98.7 1E-07 2.2E-12 103.7 13.0 105 73-234 75-179 (322)
72 KOG1540 Ubiquinone biosynthesi 98.7 1.4E-07 2.9E-12 98.1 13.1 133 73-254 95-230 (296)
73 PRK08317 hypothetical protein; 98.7 1.9E-07 4.2E-12 94.7 14.2 129 73-253 14-146 (241)
74 COG2520 Predicted methyltransf 98.7 1.3E-07 2.8E-12 103.1 12.4 131 76-263 186-320 (341)
75 PRK14121 tRNA (guanine-N(7)-)- 98.7 1.3E-07 2.8E-12 104.8 12.5 119 76-238 120-238 (390)
76 PLN02244 tocopherol O-methyltr 98.7 1.8E-07 3.9E-12 102.5 13.5 108 77-237 117-225 (340)
77 TIGR02085 meth_trns_rumB 23S r 98.7 9.6E-08 2.1E-12 105.9 11.3 82 75-187 230-311 (374)
78 PLN02396 hexaprenyldihydroxybe 98.7 3.2E-07 7E-12 99.8 15.1 107 75-235 128-235 (322)
79 PRK15451 tRNA cmo(5)U34 methyl 98.6 2.3E-07 4.9E-12 97.1 12.4 110 76-236 54-165 (247)
80 PLN02476 O-methyltransferase 98.6 1.5E-07 3.3E-12 100.2 11.3 148 39-236 80-229 (278)
81 PRK11036 putative S-adenosyl-L 98.6 2.5E-07 5.4E-12 97.0 12.6 108 77-237 43-151 (255)
82 PRK10909 rsmD 16S rRNA m(2)G96 98.6 2E-07 4.3E-12 94.9 11.2 80 77-186 52-131 (199)
83 PF05958 tRNA_U5-meth_tr: tRNA 98.6 1.1E-07 2.3E-12 104.8 9.8 100 73-190 192-292 (352)
84 PRK11207 tellurite resistance 98.6 3.9E-07 8.4E-12 92.2 13.0 108 74-234 26-133 (197)
85 PRK00517 prmA ribosomal protei 98.6 6E-07 1.3E-11 94.1 14.7 118 76-262 117-235 (250)
86 PF03602 Cons_hypoth95: Conser 98.6 8.3E-08 1.8E-12 96.4 7.9 82 78-186 42-124 (183)
87 TIGR00406 prmA ribosomal prote 98.6 5.5E-07 1.2E-11 96.4 14.6 123 76-262 157-280 (288)
88 PLN02781 Probable caffeoyl-CoA 98.6 3.6E-07 7.8E-12 95.2 12.7 120 69-237 59-180 (234)
89 KOG2904 Predicted methyltransf 98.6 3.7E-07 8E-12 95.7 12.6 147 78-252 148-300 (328)
90 PRK04338 N(2),N(2)-dimethylgua 98.6 1.1E-07 2.4E-12 105.7 9.4 101 78-234 57-157 (382)
91 KOG2915 tRNA(1-methyladenosine 98.6 5.1E-07 1.1E-11 94.5 12.5 135 71-263 98-236 (314)
92 PRK10258 biotin biosynthesis p 98.6 5.8E-07 1.3E-11 93.7 12.7 116 63-237 27-142 (251)
93 PRK01683 trans-aconitate 2-met 98.6 4.2E-07 9E-12 95.0 11.5 105 73-235 26-130 (258)
94 COG2813 RsmC 16S RNA G1207 met 98.6 1.5E-06 3.2E-11 93.0 15.6 154 54-262 132-287 (300)
95 PRK05031 tRNA (uracil-5-)-meth 98.5 2.9E-07 6.3E-12 101.7 10.3 60 79-149 207-266 (362)
96 PF08241 Methyltransf_11: Meth 98.5 2.2E-07 4.7E-12 80.5 7.3 95 83-233 1-95 (95)
97 TIGR00452 methyltransferase, p 98.5 1.6E-06 3.4E-11 94.2 15.2 113 74-240 117-230 (314)
98 PRK15068 tRNA mo(5)U34 methylt 98.5 2E-06 4.3E-11 93.7 15.8 110 73-236 117-227 (322)
99 PF02353 CMAS: Mycolic acid cy 98.5 6.1E-07 1.3E-11 95.6 11.6 115 70-238 54-169 (273)
100 TIGR00740 methyltransferase, p 98.5 1.3E-06 2.8E-11 90.6 13.4 109 77-235 52-161 (239)
101 cd02440 AdoMet_MTases S-adenos 98.5 1.2E-06 2.6E-11 75.1 11.0 103 81-234 1-103 (107)
102 PHA03412 putative methyltransf 98.5 5.5E-07 1.2E-11 93.7 10.4 113 77-232 48-160 (241)
103 PRK14103 trans-aconitate 2-met 98.5 5.6E-07 1.2E-11 94.3 10.7 101 74-234 25-125 (255)
104 COG2227 UbiG 2-polyprenyl-3-me 98.5 3.3E-07 7.1E-12 94.9 8.1 106 77-237 58-163 (243)
105 PLN02336 phosphoethanolamine N 98.5 1.8E-06 3.9E-11 98.3 15.0 128 74-255 262-389 (475)
106 COG2264 PrmA Ribosomal protein 98.5 1.7E-06 3.6E-11 92.9 13.6 127 76-263 160-286 (300)
107 TIGR02143 trmA_only tRNA (urac 98.5 6.5E-07 1.4E-11 98.7 10.7 59 80-149 199-257 (353)
108 PTZ00098 phosphoethanolamine N 98.5 1.3E-06 2.8E-11 92.5 12.3 110 73-236 47-157 (263)
109 PLN02672 methionine S-methyltr 98.5 2.4E-06 5.2E-11 105.0 16.0 145 79-255 119-295 (1082)
110 PF02384 N6_Mtase: N-6 DNA Met 98.5 6.9E-07 1.5E-11 96.1 10.1 160 55-236 23-184 (311)
111 PF06325 PrmA: Ribosomal prote 98.4 1.1E-06 2.4E-11 94.5 11.5 123 76-263 159-281 (295)
112 PF13649 Methyltransf_25: Meth 98.4 5.7E-07 1.2E-11 80.7 7.8 101 82-229 1-101 (101)
113 TIGR00477 tehB tellurite resis 98.4 1.9E-06 4.1E-11 87.1 12.4 107 74-234 26-132 (195)
114 PF01170 UPF0020: Putative RNA 98.4 1.3E-06 2.8E-11 87.5 11.0 129 72-237 22-151 (179)
115 PF01728 FtsJ: FtsJ-like methy 98.4 2E-07 4.4E-12 92.4 5.3 120 75-237 20-141 (181)
116 COG0293 FtsJ 23S rRNA methylas 98.4 9.2E-07 2E-11 90.1 9.7 139 76-260 43-181 (205)
117 COG0742 N6-adenine-specific me 98.4 1E-06 2.3E-11 88.5 9.5 81 78-186 43-124 (187)
118 TIGR00308 TRM1 tRNA(guanine-26 98.4 5.5E-07 1.2E-11 99.9 8.1 104 79-237 45-148 (374)
119 PLN03075 nicotianamine synthas 98.4 2.5E-06 5.3E-11 91.7 12.6 109 78-235 123-233 (296)
120 TIGR00095 RNA methyltransferas 98.4 1.5E-06 3.2E-11 87.7 10.4 83 78-187 49-132 (189)
121 PF01596 Methyltransf_3: O-met 98.4 3.2E-07 7E-12 93.8 4.7 149 40-237 7-157 (205)
122 PRK00216 ubiE ubiquinone/menaq 98.4 3.7E-06 7.9E-11 85.8 12.3 115 73-238 46-161 (239)
123 PRK00811 spermidine synthase; 98.3 5.5E-06 1.2E-10 88.7 13.5 127 78-253 76-207 (283)
124 PHA03411 putative methyltransf 98.3 7.5E-06 1.6E-10 87.1 14.2 143 74-255 60-206 (279)
125 PRK04457 spermidine synthase; 98.3 6.1E-06 1.3E-10 87.4 13.2 115 77-238 65-180 (262)
126 PF09445 Methyltransf_15: RNA 98.3 1.8E-06 3.8E-11 85.3 8.3 84 80-192 1-85 (163)
127 PRK11705 cyclopropane fatty ac 98.3 3.2E-06 7E-11 94.2 11.3 110 72-238 161-270 (383)
128 COG2230 Cfa Cyclopropane fatty 98.3 3.7E-06 7.9E-11 89.7 11.1 115 70-238 64-179 (283)
129 COG4122 Predicted O-methyltran 98.3 2.9E-06 6.4E-11 87.5 9.9 122 65-238 46-169 (219)
130 PRK12335 tellurite resistance 98.3 6.7E-06 1.4E-10 88.0 12.7 101 79-233 121-221 (287)
131 TIGR02716 C20_methyl_CrtF C-20 98.2 1.1E-05 2.3E-10 87.0 13.4 118 73-243 144-262 (306)
132 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 7.8E-06 1.7E-10 82.5 11.7 110 76-238 37-146 (223)
133 smart00650 rADc Ribosomal RNA 98.2 7.9E-06 1.7E-10 80.4 11.2 80 73-186 8-87 (169)
134 PRK06922 hypothetical protein; 98.2 1E-05 2.2E-10 94.5 13.4 128 73-239 413-541 (677)
135 smart00828 PKS_MT Methyltransf 98.2 2E-05 4.3E-10 80.5 14.1 104 80-236 1-105 (224)
136 TIGR00417 speE spermidine synt 98.2 1.6E-05 3.5E-10 84.4 12.9 129 74-252 69-201 (270)
137 TIGR01983 UbiG ubiquinone bios 98.2 1.1E-05 2.3E-10 82.3 11.1 108 77-237 44-151 (224)
138 PRK01581 speE spermidine synth 98.2 1.5E-05 3.2E-10 87.9 12.6 137 70-255 143-289 (374)
139 PRK05134 bifunctional 3-demeth 98.2 1.3E-05 2.8E-10 82.4 11.6 110 75-238 45-154 (233)
140 PF01269 Fibrillarin: Fibrilla 98.2 1.7E-05 3.6E-10 81.7 12.1 136 74-262 69-209 (229)
141 PRK03612 spermidine synthase; 98.2 1.3E-05 2.7E-10 92.9 12.5 128 77-252 296-430 (521)
142 PLN02490 MPBQ/MSBQ methyltrans 98.1 9.7E-06 2.1E-10 89.0 10.5 103 77-234 112-214 (340)
143 TIGR02072 BioC biotin biosynth 98.1 1.4E-05 3E-10 81.3 10.8 102 78-235 34-135 (240)
144 KOG1596 Fibrillarin and relate 98.1 1E-05 2.2E-10 83.6 9.0 126 75-253 153-282 (317)
145 PF02390 Methyltransf_4: Putat 98.1 1.5E-05 3.2E-10 81.0 9.6 135 81-262 20-157 (195)
146 TIGR00006 S-adenosyl-methyltra 98.1 5.2E-05 1.1E-09 82.0 13.5 90 73-188 15-104 (305)
147 COG2521 Predicted archaeal met 98.0 4.6E-06 1E-10 85.9 5.1 139 74-262 130-274 (287)
148 TIGR02021 BchM-ChlM magnesium 98.0 4.9E-05 1.1E-09 77.7 12.4 62 76-148 53-115 (219)
149 TIGR03438 probable methyltrans 98.0 7.7E-05 1.7E-09 80.5 14.1 122 77-250 62-189 (301)
150 PRK14896 ksgA 16S ribosomal RN 98.0 1.2E-05 2.5E-10 84.9 7.3 80 73-188 24-103 (258)
151 PF13489 Methyltransf_23: Meth 98.0 1.9E-05 4.2E-10 75.3 8.2 99 76-238 20-118 (161)
152 PLN02336 phosphoethanolamine N 98.0 5.3E-05 1.2E-09 86.4 13.0 111 73-235 32-142 (475)
153 PLN02589 caffeoyl-CoA O-methyl 98.0 3.3E-05 7.2E-10 81.3 10.3 145 41-234 43-189 (247)
154 PRK00050 16S rRNA m(4)C1402 me 98.0 1.3E-05 2.8E-10 86.3 6.8 90 73-189 14-103 (296)
155 PF08242 Methyltransf_12: Meth 97.9 4.4E-06 9.6E-11 74.3 2.2 99 83-231 1-99 (99)
156 PTZ00338 dimethyladenosine tra 97.9 2.7E-05 5.9E-10 83.9 8.5 84 72-189 30-114 (294)
157 PF05401 NodS: Nodulation prot 97.9 6.2E-05 1.3E-09 76.4 10.3 141 74-268 39-185 (201)
158 COG4076 Predicted RNA methylas 97.9 1.4E-05 3.1E-10 79.9 5.1 99 80-232 34-132 (252)
159 COG0220 Predicted S-adenosylme 97.9 5.7E-05 1.2E-09 78.6 9.6 123 80-249 50-172 (227)
160 KOG4589 Cell division protein 97.9 9.9E-05 2.1E-09 74.0 10.7 133 76-254 67-200 (232)
161 PF01795 Methyltransf_5: MraW 97.9 1.3E-05 2.9E-10 86.6 4.9 195 73-300 15-299 (310)
162 TIGR03840 TMPT_Se_Te thiopurin 97.9 0.00013 2.9E-09 75.1 12.0 111 77-238 33-155 (213)
163 PRK11088 rrmA 23S rRNA methylt 97.9 8.1E-05 1.7E-09 79.0 10.6 98 77-235 84-181 (272)
164 PF03848 TehB: Tellurite resis 97.8 0.00015 3.2E-09 73.7 11.7 105 77-235 29-133 (192)
165 COG0275 Predicted S-adenosylme 97.8 0.00037 8E-09 74.7 14.7 92 72-188 17-108 (314)
166 TIGR02987 met_A_Alw26 type II 97.8 0.00012 2.5E-09 85.0 11.6 159 78-253 31-215 (524)
167 smart00138 MeTrc Methyltransfe 97.8 0.00019 4.2E-09 76.2 12.2 113 77-234 98-241 (264)
168 KOG1663 O-methyltransferase [S 97.8 0.00016 3.4E-09 74.7 10.7 147 40-235 34-183 (237)
169 KOG1270 Methyltransferases [Co 97.8 5.3E-05 1.1E-09 79.5 7.2 100 79-235 90-195 (282)
170 KOG1271 Methyltransferases [Ge 97.7 0.00012 2.6E-09 73.1 8.9 113 80-241 69-187 (227)
171 COG0286 HsdM Type I restrictio 97.7 0.0007 1.5E-08 78.0 15.8 175 58-253 166-346 (489)
172 PRK11727 23S rRNA mA1618 methy 97.7 0.00042 9.1E-09 75.7 13.2 88 78-191 114-204 (321)
173 KOG2671 Putative RNA methylase 97.7 4.1E-05 8.9E-10 82.7 5.1 146 57-233 187-352 (421)
174 PLN02366 spermidine synthase 97.7 0.00058 1.2E-08 74.3 14.0 110 78-233 91-204 (308)
175 PRK10742 putative methyltransf 97.7 0.00011 2.4E-09 77.1 8.1 88 69-187 77-175 (250)
176 PRK07580 Mg-protoporphyrin IX 97.6 0.0004 8.6E-09 71.0 11.4 59 76-145 61-120 (230)
177 PLN02585 magnesium protoporphy 97.6 0.00037 8.1E-09 75.9 11.7 46 78-134 144-189 (315)
178 PRK00274 ksgA 16S ribosomal RN 97.6 0.00014 2.9E-09 77.5 8.0 79 73-186 37-115 (272)
179 KOG1099 SAM-dependent methyltr 97.6 0.00013 2.8E-09 75.1 7.4 130 79-254 42-179 (294)
180 KOG2187 tRNA uracil-5-methyltr 97.6 0.00012 2.5E-09 83.0 7.6 114 73-239 378-493 (534)
181 COG4106 Tam Trans-aconitate me 97.6 0.00019 4.2E-09 73.5 8.1 100 76-233 28-127 (257)
182 PLN02823 spermine synthase 97.6 0.00061 1.3E-08 74.9 12.5 136 70-252 96-237 (336)
183 PRK05785 hypothetical protein; 97.6 0.00042 9.1E-09 71.9 10.4 91 78-229 51-141 (226)
184 PRK06202 hypothetical protein; 97.6 0.00042 9.1E-09 71.6 10.4 110 74-234 56-165 (232)
185 PF08003 Methyltransf_9: Prote 97.5 0.0015 3.3E-08 70.4 14.3 109 78-240 115-224 (315)
186 PF02527 GidB: rRNA small subu 97.5 0.00058 1.3E-08 69.0 10.5 98 81-235 51-148 (184)
187 PRK13255 thiopurine S-methyltr 97.5 0.0009 2E-08 69.2 11.8 42 76-128 35-76 (218)
188 PRK01544 bifunctional N5-gluta 97.5 0.00051 1.1E-08 79.5 10.5 117 78-236 347-463 (506)
189 KOG2899 Predicted methyltransf 97.5 0.00044 9.5E-09 72.0 8.8 47 78-133 58-104 (288)
190 TIGR03587 Pse_Me-ase pseudamin 97.5 0.00053 1.2E-08 70.1 9.4 60 75-148 40-99 (204)
191 COG1889 NOP1 Fibrillarin-like 97.4 0.0019 4.2E-08 65.7 12.3 140 75-268 73-217 (231)
192 PF03291 Pox_MCEL: mRNA cappin 97.4 0.00047 1E-08 75.6 8.6 118 78-238 62-189 (331)
193 TIGR00755 ksgA dimethyladenosi 97.4 0.00054 1.2E-08 72.0 8.6 65 73-150 24-88 (253)
194 KOG1661 Protein-L-isoaspartate 97.4 0.00053 1.1E-08 70.1 8.1 105 73-233 75-191 (237)
195 COG3963 Phospholipid N-methylt 97.3 0.0017 3.7E-08 64.3 10.5 144 42-237 11-158 (194)
196 KOG1098 Putative SAM-dependent 97.3 0.00015 3.2E-09 83.2 3.3 131 76-252 42-172 (780)
197 PF01564 Spermine_synth: Sperm 97.2 0.00086 1.9E-08 70.6 7.7 134 70-253 69-207 (246)
198 PRK11760 putative 23S rRNA C24 97.2 0.00087 1.9E-08 73.4 7.9 75 76-189 209-283 (357)
199 COG0357 GidB Predicted S-adeno 97.2 0.0016 3.5E-08 67.3 9.1 160 44-261 24-193 (215)
200 COG0030 KsgA Dimethyladenosine 97.1 0.0016 3.5E-08 69.0 9.0 86 71-189 23-108 (259)
201 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0017 3.7E-08 72.5 8.7 105 79-238 50-156 (377)
202 KOG4300 Predicted methyltransf 97.1 0.0017 3.6E-08 66.4 7.6 103 79-234 77-181 (252)
203 PF07021 MetW: Methionine bios 97.0 0.0029 6.3E-08 64.2 9.2 71 76-182 11-81 (193)
204 COG0116 Predicted N6-adenine-s 97.0 0.0064 1.4E-07 67.6 12.5 129 72-236 185-345 (381)
205 PF05185 PRMT5: PRMT5 arginine 97.0 0.002 4.3E-08 73.5 8.7 126 79-251 187-315 (448)
206 PRK11783 rlmL 23S rRNA m(2)G24 97.0 0.0079 1.7E-07 72.4 14.0 124 77-235 189-347 (702)
207 PF12147 Methyltransf_20: Puta 96.8 0.014 3E-07 62.7 12.6 132 78-255 135-267 (311)
208 PF00891 Methyltransf_2: O-met 96.8 0.0056 1.2E-07 63.5 9.3 115 73-247 95-211 (241)
209 PF05219 DREV: DREV methyltran 96.7 0.0058 1.3E-07 64.6 9.0 94 78-234 94-187 (265)
210 PF01861 DUF43: Protein of unk 96.7 0.011 2.4E-07 61.9 10.8 124 78-255 44-170 (243)
211 KOG3420 Predicted RNA methylas 96.7 0.0015 3.2E-08 63.4 3.7 79 78-191 48-126 (185)
212 KOG2730 Methylase [General fun 96.6 0.0012 2.6E-08 67.9 2.9 91 78-196 94-185 (263)
213 KOG1541 Predicted protein carb 96.6 0.012 2.6E-07 60.8 9.4 144 56-253 26-174 (270)
214 TIGR00478 tly hemolysin TlyA f 96.5 0.0044 9.6E-08 64.7 6.0 39 77-125 74-112 (228)
215 COG0421 SpeE Spermidine syntha 96.4 0.015 3.2E-07 62.7 9.3 120 70-237 69-192 (282)
216 PRK13256 thiopurine S-methyltr 96.3 0.035 7.6E-07 58.0 11.6 114 76-238 41-166 (226)
217 COG1867 TRM1 N2,N2-dimethylgua 96.3 0.0093 2E-07 65.7 7.3 120 79-255 53-173 (380)
218 TIGR00497 hsdM type I restrict 96.2 0.026 5.6E-07 65.4 11.0 154 55-232 192-352 (501)
219 KOG3191 Predicted N6-DNA-methy 96.2 0.14 3E-06 51.8 14.2 145 79-260 44-190 (209)
220 KOG0820 Ribosomal RNA adenine 96.1 0.021 4.7E-07 60.6 8.5 80 73-186 53-133 (315)
221 TIGR02081 metW methionine bios 96.0 0.023 4.9E-07 57.2 8.3 42 77-128 12-53 (194)
222 cd00315 Cyt_C5_DNA_methylase C 96.0 0.012 2.6E-07 62.9 6.3 79 81-194 2-80 (275)
223 PF00398 RrnaAD: Ribosomal RNA 96.0 0.014 3E-07 61.8 6.8 66 72-150 24-89 (262)
224 PF05724 TPMT: Thiopurine S-me 96.0 0.03 6.6E-07 58.0 9.0 114 75-239 34-159 (218)
225 KOG3010 Methyltransferase [Gen 95.9 0.028 6E-07 58.9 8.3 125 76-255 30-157 (261)
226 PF10294 Methyltransf_16: Puta 95.9 0.029 6.3E-07 55.8 8.3 114 76-240 43-160 (173)
227 TIGR01444 fkbM_fam methyltrans 95.8 0.03 6.6E-07 52.9 7.6 57 81-146 1-57 (143)
228 KOG1253 tRNA methyltransferase 95.8 0.0085 1.8E-07 68.0 4.2 114 73-238 104-218 (525)
229 PF04816 DUF633: Family of unk 95.7 0.2 4.4E-06 51.6 13.7 120 82-262 1-121 (205)
230 PLN02232 ubiquinone biosynthes 95.7 0.029 6.2E-07 55.0 7.3 81 115-238 1-84 (160)
231 KOG1975 mRNA cap methyltransfe 95.6 0.04 8.8E-07 59.8 8.3 129 77-254 116-250 (389)
232 COG3897 Predicted methyltransf 95.2 0.056 1.2E-06 55.1 7.2 57 78-145 79-135 (218)
233 TIGR03439 methyl_EasF probable 95.2 0.42 9.2E-06 52.5 14.5 134 76-251 74-210 (319)
234 PF13578 Methyltransf_24: Meth 95.1 0.016 3.4E-07 52.3 2.9 102 83-233 1-103 (106)
235 KOG2361 Predicted methyltransf 95.1 0.055 1.2E-06 56.7 7.0 108 81-234 74-182 (264)
236 KOG1499 Protein arginine N-met 94.9 0.11 2.5E-06 57.0 9.2 111 78-239 60-171 (346)
237 PF08123 DOT1: Histone methyla 94.9 0.11 2.4E-06 53.5 8.7 51 73-132 37-87 (205)
238 COG1189 Predicted rRNA methyla 94.9 0.057 1.2E-06 56.5 6.5 37 78-124 79-115 (245)
239 COG1064 AdhP Zn-dependent alco 94.6 0.15 3.2E-06 56.3 9.1 96 74-234 162-258 (339)
240 COG4976 Predicted methyltransf 94.4 0.055 1.2E-06 56.4 5.0 130 74-263 121-263 (287)
241 PF06080 DUF938: Protein of un 94.3 0.45 9.7E-06 49.0 11.4 131 79-254 26-164 (204)
242 PF04445 SAM_MT: Putative SAM- 94.3 0.11 2.3E-06 54.6 6.9 85 70-185 65-160 (234)
243 PRK10611 chemotaxis methyltran 94.0 0.34 7.3E-06 52.5 10.3 50 80-130 117-166 (287)
244 PF01739 CheR: CheR methyltran 94.0 0.3 6.6E-06 49.9 9.5 117 78-235 31-175 (196)
245 KOG2782 Putative SAM dependent 93.9 0.02 4.4E-07 58.9 0.8 104 65-191 24-133 (303)
246 PRK00536 speE spermidine synth 93.9 0.55 1.2E-05 50.2 11.6 121 70-255 65-189 (262)
247 KOG1500 Protein arginine N-met 93.8 0.33 7.1E-06 53.2 9.5 123 78-253 177-302 (517)
248 PF13679 Methyltransf_32: Meth 93.5 0.29 6.3E-06 46.9 7.9 56 75-135 22-77 (141)
249 PF00145 DNA_methylase: C-5 cy 93.5 0.3 6.6E-06 52.1 8.8 78 81-194 2-79 (335)
250 PRK01747 mnmC bifunctional tRN 93.4 0.9 2E-05 54.5 13.6 134 77-258 56-222 (662)
251 KOG2078 tRNA modification enzy 93.1 0.042 9.2E-07 61.5 1.6 64 76-150 247-312 (495)
252 PF03059 NAS: Nicotianamine sy 92.8 0.68 1.5E-05 49.9 10.2 105 80-233 122-228 (276)
253 PF05891 Methyltransf_PK: AdoM 92.6 0.22 4.7E-06 51.8 5.8 105 78-233 55-159 (218)
254 KOG0024 Sorbitol dehydrogenase 92.5 0.46 1E-05 52.0 8.4 109 74-236 165-274 (354)
255 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.2 0.5 1.1E-05 50.4 8.1 51 211-263 175-237 (256)
256 PF10354 DUF2431: Domain of un 92.1 2 4.4E-05 42.8 11.9 60 173-241 72-131 (166)
257 COG4262 Predicted spermidine s 92.1 1.2 2.6E-05 49.5 10.9 113 75-234 286-406 (508)
258 KOG1227 Putative methyltransfe 91.6 0.1 2.2E-06 56.4 2.0 61 78-147 194-255 (351)
259 PF05971 Methyltransf_10: Prot 91.3 1.1 2.3E-05 48.9 9.6 154 79-262 103-282 (299)
260 COG0500 SmtA SAM-dependent met 91.3 3.5 7.6E-05 35.9 11.4 109 82-243 52-163 (257)
261 PF06962 rRNA_methylase: Putat 91.0 1.6 3.5E-05 42.5 9.5 110 113-254 1-113 (140)
262 COG4798 Predicted methyltransf 90.3 3.5 7.6E-05 42.4 11.4 40 72-119 42-81 (238)
263 PRK04148 hypothetical protein; 89.9 0.65 1.4E-05 44.9 5.7 41 78-129 16-57 (134)
264 TIGR00675 dcm DNA-methyltransf 89.6 0.55 1.2E-05 51.3 5.7 77 82-194 1-77 (315)
265 PF04989 CmcI: Cephalosporin h 89.1 0.4 8.7E-06 49.5 3.8 133 58-233 11-145 (206)
266 PRK11524 putative methyltransf 89.0 0.7 1.5E-05 49.6 5.8 45 77-132 207-251 (284)
267 COG1063 Tdh Threonine dehydrog 88.8 1.7 3.7E-05 48.1 8.8 103 76-235 166-269 (350)
268 COG1352 CheR Methylase of chem 88.6 2.9 6.3E-05 44.9 10.1 47 79-129 97-147 (268)
269 PF00107 ADH_zinc_N: Zinc-bind 87.9 1.6 3.6E-05 40.1 6.9 89 89-236 2-90 (130)
270 PF03141 Methyltransf_29: Puta 87.9 0.72 1.6E-05 53.1 5.2 102 80-239 119-223 (506)
271 PF01555 N6_N4_Mtase: DNA meth 87.5 0.94 2E-05 45.4 5.4 42 76-128 189-230 (231)
272 PF05148 Methyltransf_8: Hypot 87.5 1.3 2.8E-05 46.0 6.3 113 69-255 63-177 (219)
273 PF05430 Methyltransf_30: S-ad 86.6 0.9 1.9E-05 43.2 4.3 57 175-257 49-105 (124)
274 TIGR03451 mycoS_dep_FDH mycoth 86.0 3.5 7.7E-05 45.1 9.3 52 74-137 172-223 (358)
275 KOG3115 Methyltransferase-like 85.9 2.8 6.1E-05 43.4 7.6 116 79-236 61-184 (249)
276 PRK09880 L-idonate 5-dehydroge 85.5 8.9 0.00019 41.7 12.0 52 75-138 166-217 (343)
277 COG0270 Dcm Site-specific DNA 85.3 2.6 5.7E-05 46.2 7.9 84 79-195 3-86 (328)
278 cd08230 glucose_DH Glucose deh 85.0 4.2 9E-05 44.4 9.2 48 76-137 170-221 (355)
279 PF01189 Nol1_Nop2_Fmu: NOL1/N 84.8 0.0018 3.9E-08 69.6 -16.8 65 180-244 1-65 (283)
280 cd08237 ribitol-5-phosphate_DH 84.7 6.2 0.00013 43.0 10.4 46 75-128 160-206 (341)
281 TIGR02822 adh_fam_2 zinc-bindi 84.3 7.7 0.00017 42.1 10.9 51 74-138 161-212 (329)
282 COG2384 Predicted SAM-dependen 84.1 21 0.00045 37.5 13.1 120 77-255 15-135 (226)
283 PRK13699 putative methylase; P 84.0 2 4.4E-05 44.8 5.9 48 76-134 161-208 (227)
284 PF10237 N6-adenineMlase: Prob 83.9 2.5 5.4E-05 42.1 6.2 60 174-264 84-143 (162)
285 COG2933 Predicted SAM-dependen 83.9 1.9 4.1E-05 46.1 5.5 70 76-184 209-278 (358)
286 cd08281 liver_ADH_like1 Zinc-d 83.8 4.3 9.4E-05 44.7 8.7 52 74-137 187-238 (371)
287 PRK11524 putative methyltransf 82.2 1.9 4E-05 46.4 4.9 57 175-238 26-82 (284)
288 PF09243 Rsm22: Mitochondrial 81.9 7.6 0.00017 41.6 9.5 47 80-134 35-81 (274)
289 COG1568 Predicted methyltransf 81.7 3.2 7E-05 44.7 6.3 146 54-254 127-279 (354)
290 PRK10458 DNA cytosine methylas 81.1 5.2 0.00011 46.3 8.3 99 78-192 87-185 (467)
291 PHA01634 hypothetical protein 81.0 6.8 0.00015 37.8 7.5 48 78-135 28-75 (156)
292 cd08254 hydroxyacyl_CoA_DH 6-h 80.6 10 0.00023 40.3 10.0 44 75-128 162-206 (338)
293 PF11599 AviRa: RRNA methyltra 79.7 3.8 8.2E-05 42.8 5.8 48 78-132 51-98 (246)
294 KOG3987 Uncharacterized conser 76.3 1.1 2.4E-05 46.4 0.8 38 79-127 113-150 (288)
295 TIGR03201 dearomat_had 6-hydro 76.1 15 0.00032 40.1 9.7 50 74-137 162-212 (349)
296 PRK10309 galactitol-1-phosphat 75.6 15 0.00033 39.8 9.6 52 74-137 156-207 (347)
297 TIGR03366 HpnZ_proposed putati 74.8 13 0.00029 39.2 8.6 51 75-137 117-167 (280)
298 KOG3178 Hydroxyindole-O-methyl 74.4 10 0.00022 42.1 7.7 100 80-238 179-278 (342)
299 cd08239 THR_DH_like L-threonin 73.8 12 0.00025 40.4 8.1 52 74-137 159-210 (339)
300 TIGR02818 adh_III_F_hyde S-(hy 73.7 12 0.00026 41.3 8.2 51 74-137 181-232 (368)
301 PRK09424 pntA NAD(P) transhydr 73.5 29 0.00062 40.8 11.5 50 74-137 160-210 (509)
302 PLN02740 Alcohol dehydrogenase 73.1 17 0.00036 40.4 9.3 53 74-138 194-246 (381)
303 TIGR01202 bchC 2-desacetyl-2-h 72.5 14 0.0003 39.7 8.2 42 77-127 143-185 (308)
304 cd08238 sorbose_phosphate_red 70.3 15 0.00033 41.2 8.2 50 74-130 171-222 (410)
305 PLN03154 putative allyl alcoho 69.9 15 0.00033 40.3 7.9 52 74-138 154-207 (348)
306 TIGR02825 B4_12hDH leukotriene 67.4 24 0.00052 37.8 8.7 50 74-137 134-185 (325)
307 KOG0023 Alcohol dehydrogenase, 66.9 21 0.00046 39.5 8.0 60 75-148 178-239 (360)
308 PLN02827 Alcohol dehydrogenase 66.8 25 0.00054 39.0 9.0 52 74-137 189-240 (378)
309 KOG1709 Guanidinoacetate methy 63.6 48 0.001 35.0 9.4 113 77-243 100-212 (271)
310 PRK13699 putative methylase; P 62.8 27 0.00059 36.5 7.7 71 174-255 18-88 (227)
311 PF01555 N6_N4_Mtase: DNA meth 62.6 13 0.00029 37.1 5.3 80 177-262 1-80 (231)
312 cd08278 benzyl_alcohol_DH Benz 62.6 39 0.00084 37.1 9.4 46 74-128 182-228 (365)
313 PF13636 Nol1_Nop2_Fmu_2: pre- 61.2 8.2 0.00018 35.3 3.1 72 556-647 11-82 (102)
314 PF06859 Bin3: Bicoid-interact 60.9 4.9 0.00011 37.6 1.6 19 215-233 24-42 (110)
315 cd08277 liver_alcohol_DH_like 60.5 53 0.0012 36.0 10.0 52 74-137 180-231 (365)
316 cd05278 FDH_like Formaldehyde 59.6 37 0.0008 36.4 8.4 46 74-128 163-209 (347)
317 PRK12429 3-hydroxybutyrate deh 59.2 63 0.0014 32.8 9.7 61 79-148 4-64 (258)
318 KOG1269 SAM-dependent methyltr 59.2 19 0.0004 40.5 6.1 111 68-232 100-212 (364)
319 cd08242 MDR_like Medium chain 59.0 75 0.0016 33.7 10.6 51 74-137 151-201 (319)
320 cd08293 PTGR2 Prostaglandin re 58.6 44 0.00095 35.9 8.8 52 75-138 149-204 (345)
321 PF03721 UDPG_MGDP_dh_N: UDP-g 57.9 72 0.0016 32.2 9.6 47 216-263 101-150 (185)
322 cd08300 alcohol_DH_class_III c 57.0 61 0.0013 35.6 9.7 52 74-137 182-233 (368)
323 PRK12939 short chain dehydroge 55.9 73 0.0016 32.2 9.5 61 79-148 7-67 (250)
324 cd08295 double_bond_reductase_ 55.7 40 0.00086 36.4 7.9 52 74-138 147-200 (338)
325 cd08236 sugar_DH NAD(P)-depend 54.8 48 0.001 35.6 8.3 46 73-127 154-200 (343)
326 cd08285 NADP_ADH NADP(H)-depen 54.2 65 0.0014 34.9 9.2 49 74-137 162-213 (351)
327 PF07669 Eco57I: Eco57I restri 54.1 51 0.0011 30.2 7.1 78 176-263 2-81 (106)
328 cd08234 threonine_DH_like L-th 53.4 1E+02 0.0022 32.8 10.5 47 73-127 154-200 (334)
329 cd08255 2-desacetyl-2-hydroxye 52.8 75 0.0016 32.9 9.1 47 73-128 92-139 (277)
330 cd08294 leukotriene_B4_DH_like 52.7 75 0.0016 33.7 9.3 50 74-137 139-190 (329)
331 cd08283 FDH_like_1 Glutathione 52.7 23 0.0005 39.3 5.6 48 73-129 179-227 (386)
332 PRK06181 short chain dehydroge 52.7 95 0.0021 31.9 9.8 59 81-148 3-61 (263)
333 TIGR02819 fdhA_non_GSH formald 52.3 67 0.0015 36.1 9.2 52 74-137 181-232 (393)
334 cd08301 alcohol_DH_plants Plan 52.2 67 0.0014 35.2 9.0 52 74-137 183-234 (369)
335 PRK06194 hypothetical protein; 51.4 1.8E+02 0.004 30.2 11.9 61 79-148 6-66 (287)
336 PRK07533 enoyl-(acyl carrier p 51.0 1.2E+02 0.0025 31.5 10.2 62 78-148 9-71 (258)
337 PF07091 FmrO: Ribosomal RNA m 50.7 48 0.001 35.5 7.1 54 75-137 102-155 (251)
338 PRK08594 enoyl-(acyl carrier p 50.4 1.1E+02 0.0024 31.8 9.9 64 78-148 6-70 (257)
339 KOG3045 Predicted RNA methylas 49.9 35 0.00076 36.9 5.9 103 79-256 181-284 (325)
340 PLN02668 indole-3-acetate carb 49.5 1.2E+02 0.0026 34.5 10.5 51 79-129 64-120 (386)
341 PF03492 Methyltransf_7: SAM d 49.1 95 0.0021 34.4 9.5 43 79-121 17-66 (334)
342 cd05285 sorbitol_DH Sorbitol d 48.7 1.2E+02 0.0027 32.6 10.3 49 73-129 157-205 (343)
343 KOG1501 Arginine N-methyltrans 48.7 34 0.00074 39.3 5.9 57 81-147 69-126 (636)
344 PF11899 DUF3419: Protein of u 48.7 30 0.00066 39.1 5.6 64 58-132 14-78 (380)
345 cd08232 idonate-5-DH L-idonate 47.7 94 0.002 33.3 9.2 42 77-127 164-206 (339)
346 PRK05599 hypothetical protein; 47.6 1.2E+02 0.0025 31.3 9.5 59 81-148 2-60 (246)
347 PF02086 MethyltransfD12: D12 46.4 25 0.00053 36.5 4.3 44 78-132 20-63 (260)
348 PRK08324 short chain dehydroge 46.0 87 0.0019 37.9 9.4 133 78-235 421-557 (681)
349 PLN02514 cinnamyl-alcohol dehy 45.5 1.3E+02 0.0028 33.0 10.0 50 76-137 178-227 (357)
350 PRK15182 Vi polysaccharide bio 45.1 2.5E+02 0.0053 32.3 12.4 35 219-254 104-138 (425)
351 PRK07326 short chain dehydroge 44.9 1.3E+02 0.0027 30.3 9.1 60 79-148 6-65 (237)
352 COG5459 Predicted rRNA methyla 44.6 32 0.00069 38.6 4.8 22 212-234 203-224 (484)
353 PRK08945 putative oxoacyl-(acy 44.6 1.7E+02 0.0037 29.8 10.1 63 76-146 9-71 (247)
354 PRK08339 short chain dehydroge 44.5 3E+02 0.0065 28.6 12.1 62 79-148 8-69 (263)
355 PRK08340 glucose-1-dehydrogena 43.1 2E+02 0.0044 29.6 10.5 58 81-148 2-59 (259)
356 PLN02586 probable cinnamyl alc 43.0 1.2E+02 0.0025 33.5 9.2 50 76-137 181-230 (360)
357 PF00106 adh_short: short chai 43.0 2E+02 0.0043 27.1 9.7 91 87-195 7-99 (167)
358 PRK08643 acetoin reductase; Va 42.9 2.8E+02 0.0061 28.3 11.4 59 81-148 4-62 (256)
359 KOG1331 Predicted methyltransf 42.8 41 0.00088 36.6 5.2 99 77-234 44-143 (293)
360 PRK13394 3-hydroxybutyrate deh 42.5 2.5E+02 0.0053 28.6 10.9 61 79-148 7-67 (262)
361 cd00401 AdoHcyase S-adenosyl-L 42.4 1.2E+02 0.0026 34.8 9.2 42 77-128 200-242 (413)
362 PRK06113 7-alpha-hydroxysteroi 42.3 2.3E+02 0.005 29.0 10.7 61 79-148 11-71 (255)
363 PLN03209 translocon at the inn 41.8 5.2E+02 0.011 31.1 14.5 68 73-148 74-149 (576)
364 PRK06079 enoyl-(acyl carrier p 41.6 2.1E+02 0.0046 29.5 10.4 59 79-148 7-66 (252)
365 PRK12937 short chain dehydroge 41.6 1.7E+02 0.0038 29.4 9.6 137 79-238 5-142 (245)
366 PRK07666 fabG 3-ketoacyl-(acyl 41.3 2E+02 0.0043 29.0 10.0 61 79-148 7-67 (239)
367 PRK08415 enoyl-(acyl carrier p 41.3 2.2E+02 0.0049 30.0 10.6 133 79-235 5-143 (274)
368 PRK06914 short chain dehydroge 41.2 1.8E+02 0.0038 30.3 9.8 60 81-148 5-65 (280)
369 PRK09242 tropinone reductase; 41.2 2.3E+02 0.0049 29.0 10.4 62 79-148 9-71 (257)
370 cd05281 TDH Threonine dehydrog 40.5 1.1E+02 0.0024 32.9 8.3 45 75-128 160-205 (341)
371 PF03141 Methyltransf_29: Puta 40.4 24 0.00051 41.2 3.2 31 214-251 446-476 (506)
372 PLN02702 L-idonate 5-dehydroge 39.3 2.1E+02 0.0045 31.3 10.3 53 74-138 177-229 (364)
373 TIGR03026 NDP-sugDHase nucleot 39.0 3E+02 0.0065 31.1 11.8 35 219-254 104-138 (411)
374 PRK08265 short chain dehydroge 38.9 2.1E+02 0.0046 29.6 9.9 58 79-148 6-63 (261)
375 cd08298 CAD2 Cinnamyl alcohol 38.6 2.5E+02 0.0055 29.8 10.7 45 74-127 163-207 (329)
376 PF07279 DUF1442: Protein of u 38.5 1.2E+02 0.0026 31.9 7.6 70 69-146 33-105 (218)
377 PRK06172 short chain dehydroge 38.2 2.6E+02 0.0057 28.4 10.4 61 79-148 7-67 (253)
378 cd08261 Zn_ADH7 Alcohol dehydr 38.1 1.6E+02 0.0034 31.6 9.0 45 73-127 154-199 (337)
379 cd08233 butanediol_DH_like (2R 38.0 1.8E+02 0.0039 31.5 9.5 47 74-128 168-214 (351)
380 PF05050 Methyltransf_21: Meth 37.7 60 0.0013 30.6 5.1 40 84-130 1-42 (167)
381 cd08231 MDR_TM0436_like Hypoth 37.4 2.6E+02 0.0056 30.4 10.7 50 77-138 176-225 (361)
382 PLN02178 cinnamyl-alcohol dehy 37.3 1.4E+02 0.003 33.3 8.7 17 218-234 256-272 (375)
383 PRK12829 short chain dehydroge 37.2 1.3E+02 0.0028 30.8 7.9 61 77-148 9-69 (264)
384 PRK07576 short chain dehydroge 37.2 3.4E+02 0.0073 28.1 11.1 62 78-148 8-69 (264)
385 PRK00050 16S rRNA m(4)C1402 me 36.8 62 0.0014 35.4 5.6 69 215-300 216-284 (296)
386 TIGR01963 PHB_DH 3-hydroxybuty 36.6 3.4E+02 0.0073 27.4 10.8 59 81-148 3-61 (255)
387 PRK07102 short chain dehydroge 36.5 3.7E+02 0.0079 27.2 11.1 60 81-148 3-62 (243)
388 PRK07523 gluconate 5-dehydroge 36.0 3.5E+02 0.0077 27.5 10.9 62 78-148 9-70 (255)
389 KOG3492 Ribosome biogenesis pr 35.7 1.1E+02 0.0025 30.3 6.5 121 502-645 10-135 (180)
390 PRK05786 fabG 3-ketoacyl-(acyl 35.1 2.8E+02 0.006 27.8 9.8 60 79-148 5-64 (238)
391 PRK06505 enoyl-(acyl carrier p 35.0 2.9E+02 0.0064 28.9 10.3 61 79-148 7-68 (271)
392 PRK07063 short chain dehydroge 35.0 2.8E+02 0.006 28.4 10.0 62 79-148 7-69 (260)
393 cd08265 Zn_ADH3 Alcohol dehydr 34.9 2.3E+02 0.0051 31.3 10.0 52 74-137 199-250 (384)
394 PF11968 DUF3321: Putative met 34.8 70 0.0015 33.6 5.3 41 215-255 124-173 (219)
395 PRK07832 short chain dehydroge 34.7 1.9E+02 0.0041 30.1 8.8 54 87-147 7-60 (272)
396 PRK06603 enoyl-(acyl carrier p 34.7 2.8E+02 0.0061 28.8 10.0 36 79-121 8-44 (260)
397 cd08282 PFDH_like Pseudomonas 34.5 2.4E+02 0.0052 31.0 10.0 111 75-233 173-283 (375)
398 PRK10083 putative oxidoreducta 34.4 2.5E+02 0.0054 30.0 9.9 53 74-137 156-208 (339)
399 PRK06949 short chain dehydroge 34.3 5.1E+02 0.011 26.3 12.3 62 78-148 8-69 (258)
400 PRK05867 short chain dehydroge 34.1 3.7E+02 0.0079 27.4 10.7 61 79-148 9-69 (253)
401 TIGR02415 23BDH acetoin reduct 33.7 3.5E+02 0.0076 27.4 10.4 54 87-148 7-60 (254)
402 PRK08085 gluconate 5-dehydroge 33.5 3.9E+02 0.0084 27.2 10.8 61 79-148 9-69 (254)
403 PRK07231 fabG 3-ketoacyl-(acyl 32.2 3.3E+02 0.0072 27.4 9.9 60 79-148 5-64 (251)
404 cd05279 Zn_ADH1 Liver alcohol 32.0 2.7E+02 0.0059 30.4 9.9 52 74-137 179-230 (365)
405 PRK07478 short chain dehydroge 31.2 4.5E+02 0.0098 26.7 10.8 61 79-148 6-66 (254)
406 PF04672 Methyltransf_19: S-ad 31.1 2.4E+02 0.0052 30.5 8.8 120 80-238 70-193 (267)
407 cd08245 CAD Cinnamyl alcohol d 30.8 3.3E+02 0.0073 28.8 10.1 45 74-127 158-202 (330)
408 PRK07831 short chain dehydroge 30.8 5.5E+02 0.012 26.3 11.4 65 77-148 15-80 (262)
409 PRK09422 ethanol-active dehydr 30.8 2.3E+02 0.0049 30.3 8.8 51 74-137 158-209 (338)
410 PRK06701 short chain dehydroge 30.6 3.3E+02 0.0072 28.9 9.9 135 78-236 45-182 (290)
411 PRK06196 oxidoreductase; Provi 30.4 3.7E+02 0.0079 28.8 10.3 57 79-148 26-82 (315)
412 PRK07454 short chain dehydroge 30.4 3.4E+02 0.0074 27.3 9.6 61 79-148 6-66 (241)
413 KOG3201 Uncharacterized conser 30.3 62 0.0013 32.8 3.8 71 56-134 4-77 (201)
414 COG4152 ABC-type uncharacteriz 30.3 86 0.0019 33.9 5.1 93 175-288 147-255 (300)
415 PRK12826 3-ketoacyl-(acyl-carr 30.2 5.5E+02 0.012 25.7 11.1 61 79-148 6-66 (251)
416 PRK05717 oxidoreductase; Valid 30.1 3E+02 0.0064 28.2 9.2 58 79-148 10-67 (255)
417 PRK06197 short chain dehydroge 29.9 5.3E+02 0.011 27.3 11.3 64 78-149 15-79 (306)
418 COG0604 Qor NADPH:quinone redu 29.8 3.5E+02 0.0076 29.7 10.1 51 74-138 138-190 (326)
419 cd08286 FDH_like_ADH2 formalde 29.7 2.4E+02 0.0052 30.3 8.8 51 75-137 163-213 (345)
420 cd05288 PGDH Prostaglandin deh 29.4 2.8E+02 0.0062 29.2 9.2 47 75-129 142-188 (329)
421 cd08284 FDH_like_2 Glutathione 29.4 2.7E+02 0.0058 29.8 9.1 47 74-128 163-209 (344)
422 cd08270 MDR4 Medium chain dehy 29.0 3.7E+02 0.0081 27.9 9.9 50 76-137 130-179 (305)
423 COG0863 DNA modification methy 29.0 1.1E+02 0.0023 32.4 5.8 48 76-134 220-267 (302)
424 PRK06139 short chain dehydroge 28.8 5E+02 0.011 28.4 11.1 61 79-148 7-67 (330)
425 PRK10754 quinone oxidoreductas 28.4 2.5E+02 0.0055 29.7 8.6 49 75-137 137-187 (327)
426 PRK05396 tdh L-threonine 3-deh 28.4 2.1E+02 0.0045 30.8 8.0 48 77-137 162-210 (341)
427 PRK07677 short chain dehydroge 27.7 5.6E+02 0.012 26.0 10.8 60 80-148 2-61 (252)
428 cd08256 Zn_ADH2 Alcohol dehydr 27.6 2.9E+02 0.0063 29.8 9.0 51 74-136 170-220 (350)
429 PRK07984 enoyl-(acyl carrier p 27.4 4.9E+02 0.011 27.2 10.4 35 79-120 6-41 (262)
430 cd08296 CAD_like Cinnamyl alco 27.1 3.5E+02 0.0076 29.0 9.5 50 74-136 159-208 (333)
431 cd08244 MDR_enoyl_red Possible 27.1 4.2E+02 0.0091 27.7 10.0 46 74-127 138-183 (324)
432 PRK08159 enoyl-(acyl carrier p 26.8 4.2E+02 0.0091 27.8 9.8 133 79-235 10-148 (272)
433 cd08269 Zn_ADH9 Alcohol dehydr 26.5 2.7E+02 0.0059 29.0 8.3 51 73-136 124-175 (312)
434 PRK12742 oxidoreductase; Provi 26.5 5.4E+02 0.012 25.7 10.2 41 79-127 6-47 (237)
435 cd08243 quinone_oxidoreductase 26.2 3.8E+02 0.0083 27.8 9.4 51 75-137 139-189 (320)
436 KOG1197 Predicted quinone oxid 26.1 1.3E+02 0.0028 32.7 5.5 47 75-129 143-189 (336)
437 PF01488 Shikimate_DH: Shikima 25.9 4.8E+02 0.01 24.6 9.1 46 78-131 11-56 (135)
438 PRK07806 short chain dehydroge 25.9 5.6E+02 0.012 25.8 10.3 128 79-235 6-134 (248)
439 PRK07889 enoyl-(acyl carrier p 25.8 2.6E+02 0.0057 28.9 8.0 36 78-120 6-42 (256)
440 PRK05876 short chain dehydroge 25.7 7.2E+02 0.016 26.0 11.4 61 79-148 6-66 (275)
441 PF02254 TrkA_N: TrkA-N domain 25.6 1.7E+02 0.0037 26.2 5.8 47 87-148 4-51 (116)
442 KOG3673 FtsJ-like RNA methyltr 25.6 21 0.00046 41.7 -0.3 18 82-99 271-288 (845)
443 PRK12384 sorbitol-6-phosphate 25.5 7.2E+02 0.016 25.2 11.6 61 80-148 3-64 (259)
444 PRK06484 short chain dehydroge 25.4 4.6E+02 0.0099 30.1 10.6 45 78-130 268-312 (520)
445 PRK06198 short chain dehydroge 25.4 6.2E+02 0.013 25.7 10.6 61 79-148 6-67 (260)
446 TIGR02632 RhaD_aldol-ADH rhamn 25.3 5.1E+02 0.011 31.5 11.3 62 79-148 414-476 (676)
447 cd08279 Zn_ADH_class_III Class 24.9 3.9E+02 0.0084 29.1 9.4 46 74-127 178-223 (363)
448 cd08291 ETR_like_1 2-enoyl thi 24.7 3.7E+02 0.008 28.6 9.1 47 78-138 142-191 (324)
449 PLN02989 cinnamyl-alcohol dehy 24.4 4.7E+02 0.01 27.9 9.8 62 79-148 5-67 (325)
450 PRK06500 short chain dehydroge 23.8 4.9E+02 0.011 26.1 9.4 42 79-128 6-47 (249)
451 COG0677 WecC UDP-N-acetyl-D-ma 23.6 1.8E+02 0.0038 33.5 6.3 123 88-253 16-145 (436)
452 PRK05875 short chain dehydroge 23.1 7.2E+02 0.016 25.6 10.7 62 79-148 7-69 (276)
453 COG2961 ComJ Protein involved 23.1 2.5E+02 0.0055 30.3 7.0 102 111-255 110-211 (279)
454 PRK07062 short chain dehydroge 23.0 6.6E+02 0.014 25.7 10.3 62 79-148 8-70 (265)
455 cd05284 arabinose_DH_like D-ar 23.0 3.1E+02 0.0067 29.3 8.1 45 75-127 164-208 (340)
456 PRK09186 flagellin modificatio 23.0 4.5E+02 0.0097 26.6 9.0 62 79-148 4-66 (256)
457 PRK07530 3-hydroxybutyryl-CoA 22.8 7.4E+02 0.016 26.3 10.9 42 81-131 6-47 (292)
458 PRK07060 short chain dehydroge 22.6 6.9E+02 0.015 25.0 10.2 43 78-128 8-50 (245)
459 PRK07024 short chain dehydroge 22.5 5.2E+02 0.011 26.4 9.4 58 81-148 4-61 (257)
460 cd08292 ETR_like_2 2-enoyl thi 22.5 3E+02 0.0065 28.9 7.8 27 74-100 135-163 (324)
461 PRK05866 short chain dehydroge 22.5 4E+02 0.0087 28.3 8.8 61 79-148 40-100 (293)
462 PRK05650 short chain dehydroge 22.4 8.5E+02 0.018 25.0 11.0 59 81-148 2-60 (270)
463 PRK12859 3-ketoacyl-(acyl-carr 22.3 8.5E+02 0.018 24.9 11.1 63 78-148 5-79 (256)
464 PRK06125 short chain dehydroge 22.2 6.8E+02 0.015 25.5 10.2 61 79-147 7-67 (259)
465 cd08240 6_hydroxyhexanoate_dh_ 22.1 5.8E+02 0.013 27.4 10.1 43 77-127 174-216 (350)
466 cd08287 FDH_like_ADH3 formalde 22.1 4.7E+02 0.01 27.9 9.3 51 74-136 164-214 (345)
467 TIGR00692 tdh L-threonine 3-de 21.9 4.9E+02 0.011 27.9 9.4 45 76-128 159-203 (340)
468 PRK07370 enoyl-(acyl carrier p 21.8 5.6E+02 0.012 26.5 9.5 25 78-102 5-30 (258)
469 cd05286 QOR2 Quinone oxidoredu 21.7 6.3E+02 0.014 25.9 9.9 45 75-127 133-177 (320)
470 PRK08261 fabG 3-ketoacyl-(acyl 21.5 9.7E+02 0.021 27.0 12.1 69 44-120 171-243 (450)
471 PRK07453 protochlorophyllide o 21.5 7.8E+02 0.017 26.3 10.8 61 79-148 6-66 (322)
472 PF13561 adh_short_C2: Enoyl-( 21.5 1.8E+02 0.0039 29.6 5.7 125 89-235 5-133 (241)
473 PRK06124 gluconate 5-dehydroge 21.5 8E+02 0.017 24.9 10.5 62 78-148 10-71 (256)
474 cd08297 CAD3 Cinnamyl alcohol 21.5 4.1E+02 0.0089 28.4 8.7 43 75-127 162-206 (341)
475 PRK06940 short chain dehydroge 21.5 5.8E+02 0.013 26.7 9.6 57 81-148 4-60 (275)
476 TIGR02817 adh_fam_1 zinc-bindi 21.4 3.5E+02 0.0075 28.8 8.0 47 79-138 149-197 (336)
477 PRK08063 enoyl-(acyl carrier p 21.3 8.4E+02 0.018 24.5 10.9 61 79-148 4-65 (250)
478 PRK07985 oxidoreductase; Provi 21.2 6.2E+02 0.014 26.8 9.9 62 78-148 48-111 (294)
479 PRK06057 short chain dehydroge 21.0 4.4E+02 0.0094 26.9 8.4 43 78-128 6-48 (255)
480 PRK08628 short chain dehydroge 20.8 7.4E+02 0.016 25.1 10.1 60 79-148 7-66 (258)
481 PRK06077 fabG 3-ketoacyl-(acyl 20.6 8.7E+02 0.019 24.4 10.9 135 79-237 6-142 (252)
482 PRK07041 short chain dehydroge 20.6 6.4E+02 0.014 25.1 9.4 53 87-148 4-56 (230)
483 cd08274 MDR9 Medium chain dehy 20.6 5.4E+02 0.012 27.4 9.4 48 74-136 173-222 (350)
484 COG1062 AdhC Zn-dependent alco 20.6 2.2E+02 0.0048 32.1 6.2 53 73-138 180-233 (366)
485 PRK06128 oxidoreductase; Provi 20.5 6.5E+02 0.014 26.6 9.9 132 79-234 55-190 (300)
486 PRK09260 3-hydroxybutyryl-CoA 20.4 4.2E+02 0.0092 28.2 8.4 38 88-132 8-45 (288)
487 PRK12481 2-deoxy-D-gluconate 3 20.2 7.2E+02 0.016 25.4 9.9 60 78-148 7-66 (251)
No 1
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-68 Score=562.76 Aligned_cols=283 Identities=54% Similarity=0.882 Sum_probs=264.6
Q ss_pred CCCccceeecccccCCCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCC
Q 004787 1 MKSLQTEVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDH 80 (730)
Q Consensus 1 ~~~l~~~~~eg~~~~~~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~ 80 (730)
++++.+.++||+.++.+..+||||++++|+.++.+..+|+++.+.+||.||+.++++|+|++||++||+||++|+++|||
T Consensus 78 ~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~ 157 (375)
T KOG2198|consen 78 FESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGD 157 (375)
T ss_pred chhhhhhhccccccCccccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCC
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
+||||||||||||+||++.+|...+ .|.|+|||++.+|+++|+|+++|+..+++.+++|++..||++.+...
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~~-----~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~--- 229 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDPT-----RGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG--- 229 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCCC-----CCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC---
Confidence 9999999999999999999996422 58999999999999999999999999999999999999998754311
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhh-cccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK-WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~-w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~ 239 (730)
.......||+||||||||||||+|+++++|+. |+...+.+||.+|.+||+||+++||+||+|||||||+|
T Consensus 230 ---------~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 ---------NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ---------chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 12345889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCc-cccchhhhhhhhcc
Q 004787 240 PVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI-WLASHKHVRKFRRI 300 (730)
Q Consensus 240 p~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~~Gl~~W~v~~~~~-~~~~~~~~~~~~~~ 300 (730)
|+|||+||+++|+++++++++++++..+|.|+|.+|.+.|++.+++. |+.++.++|.....
T Consensus 301 pieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~~~~~~vp~~~~~ 362 (375)
T KOG2198|consen 301 PIENEAVVQEALQKVGGAVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWFTSPLEVPKLVAN 362 (375)
T ss_pred chhhHHHHHHHHHHhcCcccceeeccccccceecCCCCcceEEecCcccccCccccccchhh
Confidence 99999999999999999999999999999999999999999999664 88999999976654
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2.1e-52 Score=468.56 Aligned_cols=380 Identities=24% Similarity=0.387 Sum_probs=278.0
Q ss_pred CccccCCCCCccccccc-chhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhcc--CCCCCCEEEeecCCcchHH
Q 004787 17 IRPLPWYPNNLAWHSNF-SRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFL--DVQPDHFVLDMCAAPGSKT 93 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~-~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llL--d~~pg~~VLDmCAAPGsKT 93 (730)
.+++||+|+++.+.... .+..+...+ . +..|.|++||++||+|+.+| +++||++||||||||||||
T Consensus 60 ~~~~p~~~~g~~~~~~~~~~~~~~~~~------~-----~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKT 128 (470)
T PRK11933 60 LTPIPWCEEGFWIERDDEDALPLGNTA------E-----HLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKT 128 (470)
T ss_pred eeECCCCCceEEEecCccccCCcccCh------H-----HHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHH
Confidence 56899999976432110 010122222 2 24699999999999999999 9999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccc
Q 004787 94 FQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173 (730)
Q Consensus 94 ~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~ 173 (730)
+|||++|++ .|.|+|||++.+|+..|++|++|+|+.|+.+++.|+..+... .
T Consensus 129 t~la~~l~~--------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--------------------~ 180 (470)
T PRK11933 129 TQIAALMNN--------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--------------------L 180 (470)
T ss_pred HHHHHHcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--------------------c
Confidence 999999875 689999999999999999999999999999999998875321 1
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
...||+||+||||||+|++||+|+++..|++.....++.+|++||.+|+++|||||+|||||||++|+|||+||+.+|++
T Consensus 181 ~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 181 PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 25699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCcc
Q 004787 254 CEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 333 (730)
Q Consensus 254 ~~~~velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (730)
+++.++++++... |... +.
T Consensus 261 ~~~~~~~~~~~~~------------~~~~-------------------------~~------------------------ 279 (470)
T PRK11933 261 YPDAVEFEPLGDL------------FPGA-------------------------EK------------------------ 279 (470)
T ss_pred CCCcEEecccccc------------cccc-------------------------cc------------------------
Confidence 8755655543211 1100 00
Q ss_pred ccchhhcccccCCchhhhhccccCCceEEEcccCCCCCceEEEEEEEcCCCCccccccCCcccccCCCCCCCCccccCCc
Q 004787 334 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQD 413 (730)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (730)
......|+|++||.++|+|||||+|+|........ +..
T Consensus 280 --------------------~~~~~~~~r~~P~~~~~dGfFiA~lrk~~~~~~~~-----~~~----------------- 317 (470)
T PRK11933 280 --------------------ALTEEGFLHVFPQIYDSEGFFVARLRKTASVPRLP-----APK----------------- 317 (470)
T ss_pred --------------------ccCCCCeEEECCCCCCCcceeeEEEEecCCccccc-----ccc-----------------
Confidence 00134799999999999999999999975421100 000
Q ss_pred ccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccC
Q 004787 414 TEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGI 493 (730)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 493 (730)
...+|
T Consensus 318 ---------------------------------------------------------------~~~~k------------ 322 (470)
T PRK11933 318 ---------------------------------------------------------------YKVGK------------ 322 (470)
T ss_pred ---------------------------------------------------------------ccccc------------
Confidence 00000
Q ss_pred CCcccCC--ChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEEe
Q 004787 494 DPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ 571 (730)
Q Consensus 494 dP~~f~~--d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~~s~~vk~il~~n~~~g~~lkii~~GvK~F~rq 571 (730)
.|+.-+. ..+.|....+-|+++. +....++.++ ..||++-...... . .+|||+..|+.+=+-.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~------~~l~~~p~~~~~~----~---~~l~v~r~Gl~lg~~k 387 (470)
T PRK11933 323 FPFTPAKDKEAQEIRQAAASVGLSW--PENLRLWQRD------KEVWLFPAGIEPL----I---GKVRFSRIGIKLAETH 387 (470)
T ss_pred ccccccchhHHHHHHHHHHhcCCCC--CCCCcEEEEC------CEEEEeccccchh----h---cCCeEeeeceeEeeee
Confidence 0000000 1123444344456653 2223454444 4699888764231 1 4799999999997654
Q ss_pred cCCCCCCcccceeeccChhhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEcCC
Q 004787 572 TSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSGE 647 (730)
Q Consensus 572 ~~~~~~~~~c~~Ri~~eGl~~l~p~i~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~~~ 647 (730)
. =+|..++.....+.+.-.++.+.++.++....|....+... +. ..-|-++|.++|.
T Consensus 388 k--------~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Yl~ge~l~~~---~~--------~~~G~~lv~~~g~ 444 (470)
T PRK11933 388 K--------KGYRWQHEAVIALASPDNANAFELTPQEAEEWYMGRDIYPQ---TA--------PPAGEVIVTYQGQ 444 (470)
T ss_pred c--------CCeeEcHHHHHHhCcccccceEecCHHHHHHHHCCCCccCC---CC--------CCCCEEEEEECCE
Confidence 2 27888888877777666678999999999999987666543 11 1248778777753
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-52 Score=456.49 Aligned_cols=182 Identities=40% Similarity=0.602 Sum_probs=166.8
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
..|.|++||.+||+|+++|+++||++||||||||||||+|||++|.+. ++.|+|+|++.+|+.+|++|++|+|
T Consensus 134 ~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~-------~~iV~A~D~~~~Rl~~l~~nl~RlG 206 (355)
T COG0144 134 AEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENE-------GAIVVAVDVSPKRLKRLRENLKRLG 206 (355)
T ss_pred hceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCC-------CceEEEEcCCHHHHHHHHHHHHHcC
Confidence 569999999999999999999999999999999999999999998752 4567999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
+.|+.++++|+..++... ....+||+||+|+||||+|++||+|++|+.|++.+...++.+|.
T Consensus 207 ~~nv~~~~~d~~~~~~~~------------------~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~ 268 (355)
T COG0144 207 VRNVIVVNKDARRLAELL------------------PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK 268 (355)
T ss_pred CCceEEEecccccccccc------------------cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHH
Confidence 999999999998876532 11136999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+||.+|+++|||||+|||||||++|+|||+||.++|+++. .++++++
T Consensus 269 ~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~ 315 (355)
T COG0144 269 EILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPV 315 (355)
T ss_pred HHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC-Cceeecc
Confidence 9999999999999999999999999999999999999975 4666553
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=4.5e-49 Score=417.65 Aligned_cols=181 Identities=42% Similarity=0.611 Sum_probs=163.7
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
+.|.|+.||.+||+++++|+++||+.||||||||||||+||+++|.+ .|.|+|+|++.+|+..|..+++|+|
T Consensus 63 ~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~--------~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 63 KNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGN--------KGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp HTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTT--------TSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred hCCcEEecccccccccccccccccccccccccCCCCceeeeeecccc--------hhHHHHhccCHHHHHHHHHHHHhcC
Confidence 45999999999999999999999999999999999999999999875 6999999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
..++.+++.|+..+.. ......||+||+|+||||.|+++++|++.+.|++.+...++.+|.
T Consensus 135 ~~~v~~~~~D~~~~~~-------------------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~ 195 (283)
T PF01189_consen 135 VFNVIVINADARKLDP-------------------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQR 195 (283)
T ss_dssp -SSEEEEESHHHHHHH-------------------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHH
T ss_pred CceEEEEeeccccccc-------------------cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHH
Confidence 9999999888876421 011236999999999999999999999987889999999999999
Q ss_pred HHHHHHHhhc----cCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecC
Q 004787 216 QIAMRGISLL----KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (730)
Q Consensus 216 ~IL~rAl~lL----KpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s 264 (730)
+||.+|++++ ||||+|||||||++|+|||+||..+|+++. .++++++.
T Consensus 196 ~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~-~~~l~~~~ 247 (283)
T PF01189_consen 196 EILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP-DFELVPIP 247 (283)
T ss_dssp HHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST-SEEEECCE
T ss_pred HHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC-CcEEEecc
Confidence 9999999999 999999999999999999999999999985 68887653
No 5
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=3.6e-47 Score=408.27 Aligned_cols=193 Identities=36% Similarity=0.546 Sum_probs=172.6
Q ss_pred hHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHH
Q 004787 43 TLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (730)
Q Consensus 43 ~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~ 122 (730)
.+.++++|| .|.+..|.++|++|+++|+||||++||||||||||||++||.+|++ +|.|+|||.+..
T Consensus 211 pigat~e~l-----ag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn--------~G~I~AnD~n~~ 277 (460)
T KOG1122|consen 211 PIGATPEYL-----AGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKN--------TGVIFANDSNEN 277 (460)
T ss_pred ccCCchhhc-----ccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcC--------CceEEecccchH
Confidence 345566654 4999999999999999999999999999999999999999999987 799999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhc
Q 004787 123 RCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW 202 (730)
Q Consensus 123 Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w 202 (730)
|+..++.|+.|+|+.|.+++++|+..||.-. +. ..|||||+|+||||.|++.|.+.+...-
T Consensus 278 r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~------------------~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k 338 (460)
T KOG1122|consen 278 RLKSLKANLHRLGVTNTIVSNYDGREFPEKE------------------FP-GSFDRVLLDAPCSGTGVISKDQSVKTNK 338 (460)
T ss_pred HHHHHHHHHHHhCCCceEEEccCcccccccc------------------cC-cccceeeecCCCCCCcccccccccccch
Confidence 9999999999999999999999999987421 11 3799999999999999999988873333
Q ss_pred ccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004787 203 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (730)
Q Consensus 203 ~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (730)
+..+...++.+|+++|..|++++++||+|||||||+.++|||+||+++|+++. .++|+++...++
T Consensus 339 ~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG 403 (460)
T KOG1122|consen 339 TVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIG 403 (460)
T ss_pred hHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC-ceEeccccccCC
Confidence 56778899999999999999999999999999999999999999999999986 689988765444
No 6
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=9.7e-45 Score=380.89 Aligned_cols=172 Identities=40% Similarity=0.613 Sum_probs=159.8
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
..|.|++||.+||+++++|+++||++|||+|||||+||++|++++++ .|.|+|+|+++.|+..+++++++++
T Consensus 49 ~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~--------~g~v~a~D~~~~~l~~~~~n~~~~g 120 (264)
T TIGR00446 49 LSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKN--------EGAIVANEFSKSRTKVLIANINRCG 120 (264)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCC--------CCEEEEEcCCHHHHHHHHHHHHHcC
Confidence 45999999999999999999999999999999999999999998764 5899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
..++.+++.|+..++.. ...||+||+||||||.|+++++|++++.|++.....++.+|.
T Consensus 121 ~~~v~~~~~D~~~~~~~---------------------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 179 (264)
T TIGR00446 121 VLNVAVTNFDGRVFGAA---------------------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK 179 (264)
T ss_pred CCcEEEecCCHHHhhhh---------------------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence 98999999998765321 145999999999999999999999988899999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
+||.+|+++|||||+|||||||++++|||+||+++|+++.+
T Consensus 180 ~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998764
No 7
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-41 Score=379.74 Aligned_cols=179 Identities=31% Similarity=0.537 Sum_probs=164.1
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
+.|.++.||.+||+++.+|++++|++|||||||||+||+++++.+++ .|.|+|+|++.+|+..++++++|+|
T Consensus 215 ~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~--------~g~V~a~Dis~~rl~~~~~n~~r~g 286 (431)
T PRK14903 215 KDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKD--------QGKILAVDISREKIQLVEKHAKRLK 286 (431)
T ss_pred HCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 56999999999999999999999999999999999999999998754 5899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
..++.+...|+..++.. ....||+|||||||||.|+++++|++++.|++.....+..+|.
T Consensus 287 ~~~v~~~~~Da~~l~~~--------------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~ 346 (431)
T PRK14903 287 LSSIEIKIADAERLTEY--------------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQL 346 (431)
T ss_pred CCeEEEEECchhhhhhh--------------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHH
Confidence 98888999998775421 1256999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+||.+|+++|||||+|||||||++++|||+||.++|++++ .++++++
T Consensus 347 ~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~-~~~~~~~ 393 (431)
T PRK14903 347 RIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDI 393 (431)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC-CcEEecc
Confidence 9999999999999999999999999999999999999876 4566554
No 8
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.1e-40 Score=368.31 Aligned_cols=201 Identities=30% Similarity=0.493 Sum_probs=171.9
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
.+++||.|+++.+.. .+..+.. ...| ..|.++.||.+|++++.+|++++|++|||+|||||+||++|
T Consensus 204 ~~~~~~~~~~~~~~~--~~~~~~~------~~~f-----~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~l 270 (434)
T PRK14901 204 ATPIPGLPQGLRLTG--NPGSIRQ------LPGY-----EEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHI 270 (434)
T ss_pred eEECCCCCCeEEecC--CCCcccc------ChHH-----hCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHH
Confidence 467889998765431 1111222 2222 45999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
++++.+ .|.|+|+|++..|+..+++|++|+|..++.+++.|+..++... ......
T Consensus 271 a~~~~~--------~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----------------~~~~~~ 325 (434)
T PRK14901 271 AELMGD--------QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK-----------------PQWRGY 325 (434)
T ss_pred HHHhCC--------CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc-----------------cccccc
Confidence 998754 5899999999999999999999999999999999988754210 011257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
||+||+||||||.|+++++|++.+.|++.....+..+|.+||.+|+++|||||+|||||||++|+|||+||.++|++++
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999999999999999999777888999999999999999999999999999999999999999999999998764
No 9
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=2.5e-39 Score=361.30 Aligned_cols=171 Identities=32% Similarity=0.446 Sum_probs=152.0
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
+.|.++.||.+||+++.+|++++|++|||||||||+||+++++++. .|.|+|+|+++.|+..+++|++++|
T Consensus 216 ~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~---------~~~v~a~D~~~~~l~~~~~n~~r~g 286 (426)
T TIGR00563 216 EEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP---------QAQVVALDIHEHRLKRVYENLKRLG 286 (426)
T ss_pred hCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 5699999999999999999999999999999999999999999863 4899999999999999999999999
Q ss_pred CCceEEEe--cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004787 136 TANLIVTN--HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (730)
Q Consensus 136 ~~nv~vt~--~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (730)
.. +.++. .|+...+. ......||+||+||||||.|++|++|++.+.|++.+...+..+
T Consensus 287 ~~-~~v~~~~~d~~~~~~-------------------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~l 346 (426)
T TIGR00563 287 LT-IKAETKDGDGRGPSQ-------------------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAEL 346 (426)
T ss_pred CC-eEEEEeccccccccc-------------------cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHH
Confidence 87 45533 34332211 0112579999999999999999999999778899999999999
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
|.+||.+|+++|||||+|||||||++|+|||+||..+|++++
T Consensus 347 Q~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 347 QSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999875
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.1e-38 Score=353.30 Aligned_cols=177 Identities=28% Similarity=0.447 Sum_probs=161.1
Q ss_pred cccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
...|.++.|+.+|++++.+|++++|++|||+|||||+||.++++.+.. .|.|+|+|+++.|+..++++++++
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~--------~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQN--------RGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCC--------CcEEEEEECCHHHHHHHHHHHHHh
Confidence 456999999999999999999999999999999999999999998753 589999999999999999999999
Q ss_pred CCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004787 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (730)
Q Consensus 135 g~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ 214 (730)
|..++.+.++|+..++. ...||+|++||||||.|+++++|++.+.|++.....+..+|
T Consensus 299 g~~~v~~~~~Da~~~~~----------------------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q 356 (445)
T PRK14904 299 GITIIETIEGDARSFSP----------------------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ 356 (445)
T ss_pred CCCeEEEEeCccccccc----------------------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH
Confidence 99888999998876431 15699999999999999999999998788888888899999
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.+||.+|.++|||||+|||||||++|+|||+||..+|++++ .+++++
T Consensus 357 ~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~-~~~~~~ 403 (445)
T PRK14904 357 AELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP-EFSAEP 403 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC-CCEEec
Confidence 99999999999999999999999999999999999999875 355444
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5.7e-38 Score=351.98 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=173.0
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
.++.||+|+++.+. ...+...+.| ..|.++.||.+|++++.+|++++|++|||+|||||+||+++
T Consensus 204 ~~~~~~~~~~~~~~----~~~~~~~~~~-----------~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~l 268 (444)
T PRK14902 204 VEESLLSPEALVIE----KGNIAGTDLF-----------KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHI 268 (444)
T ss_pred eEEcCCCCCeEEEe----CCCcccChHH-----------hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHH
Confidence 56789999875432 1223332222 35999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
++.+++ .|.|+|+|+++.|+..+++|++++|..++.+.+.|+..++.. . ...
T Consensus 269 a~~~~~--------~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------------------~-~~~ 320 (444)
T PRK14902 269 AELLKN--------TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------------------F-AEK 320 (444)
T ss_pred HHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch-------------------h-ccc
Confidence 998743 589999999999999999999999998899999998764310 0 157
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
||+|++|+||||.|+++++|++...|++.....+..+|.+||..|+++|||||+|||||||++++|||+||.++|++++
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~- 399 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP- 399 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC-
Confidence 9999999999999999999998667788888889999999999999999999999999999999999999999999864
Q ss_pred cEEEEec
Q 004787 257 SVELVDV 263 (730)
Q Consensus 257 ~velvd~ 263 (730)
.++++++
T Consensus 400 ~~~~~~~ 406 (444)
T PRK14902 400 EFELVPL 406 (444)
T ss_pred CcEEecc
Confidence 4666654
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.8e-36 Score=338.45 Aligned_cols=197 Identities=30% Similarity=0.416 Sum_probs=164.7
Q ss_pred CCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHH
Q 004787 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQ 95 (730)
Q Consensus 16 ~~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~q 95 (730)
..++.||.|+++.+.- . ..+ .... +.+.|.++.||.+|++++.+|++++|++|||+|||||+||++
T Consensus 196 ~~~~~~~~~~~~~~~~--~-~~~------~~~~-----~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~ 261 (427)
T PRK10901 196 EAFPHAVGPDAIRLET--P-VPV------HQLP-----GFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAH 261 (427)
T ss_pred ceeecCCCCCeEEECC--C-CCc------ccCc-----hhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHH
Confidence 3467889999764421 1 112 1122 224699999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccc
Q 004787 96 LLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175 (730)
Q Consensus 96 Lae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (730)
+++.+. .+.|+|+|+++.|+..++++++++|.. +.+.++|+..++.. ....
T Consensus 262 la~~~~---------~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-------------------~~~~ 312 (427)
T PRK10901 262 ILELAP---------QAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-------------------WDGQ 312 (427)
T ss_pred HHHHcC---------CCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-------------------cccC
Confidence 998753 379999999999999999999999875 57888888764321 1125
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 176 ~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
.||+|++||||||.|+++++|++.+.+++.+...+..+|.++|.+|.++|||||+|||||||+++.|||++|..+|++++
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 79999999999999999999998555677777888999999999999999999999999999999999999999999864
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.2e-30 Score=272.77 Aligned_cols=180 Identities=27% Similarity=0.369 Sum_probs=149.3
Q ss_pred ccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004787 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (730)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR 133 (730)
.++.|.+..||.+|++|+++|++.+|..|+|+|||||.||+|+|..+.+ .|+|+|+|.+..|.+.+..+++.
T Consensus 189 ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n--------~gki~afe~d~~r~~tl~~~l~~ 260 (413)
T KOG2360|consen 189 LYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRN--------QGKIYAFERDAKRAATLRKLLKI 260 (413)
T ss_pred ccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhc--------cCCcchhhhhhHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999875 69999999999999999999999
Q ss_pred cCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh--hhcccccccchH
Q 004787 134 MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW--RKWNVGLGNGLH 211 (730)
Q Consensus 134 lg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~--~~w~~~~~~~L~ 211 (730)
.|+.++....+|+...+. .........||+||+|||.|+..+.-.+- ..-.+....+|.
T Consensus 261 ag~~~~~~~~~df~~t~~-------------------~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~ 321 (413)
T KOG2360|consen 261 AGVSIVESVEGDFLNTAT-------------------PEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQ 321 (413)
T ss_pred cCCCccccccccccCCCC-------------------cccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHH
Confidence 999988877777665311 12235678999999999999864432221 111234566788
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velv 261 (730)
..|..++.+|+.+-+. -++||||||++.+|||.||+++|....+..++.
T Consensus 322 ~fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~~p~~~~l~ 370 (413)
T KOG2360|consen 322 SFQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLA 370 (413)
T ss_pred HHHHHHHHHHhcCCch-hheeeecchhhhhhhhHHHHHHHhhChhHhhhc
Confidence 8999999999997666 899999999999999999999999765444443
No 14
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.55 E-value=7.6e-14 Score=138.81 Aligned_cols=139 Identities=26% Similarity=0.295 Sum_probs=115.0
Q ss_pred cchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004787 68 MVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (730)
Q Consensus 68 mlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~ 147 (730)
.+....|.++||+++||++||+|+.|.+++ +++ |.|+|+|+|.+++|+.++++|++++|.+|+.++.++|.
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~--------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap 94 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAG--------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP 94 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhC--------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence 345567899999999999999999999998 544 57999999999999999999999999999999999987
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.... . ...||+|++ .|.|. ...||..++..||+
T Consensus 95 ~~L~--------------------~-~~~~daiFI----GGg~~----------------------i~~ile~~~~~l~~ 127 (187)
T COG2242 95 EALP--------------------D-LPSPDAIFI----GGGGN----------------------IEEILEAAWERLKP 127 (187)
T ss_pred Hhhc--------------------C-CCCCCEEEE----CCCCC----------------------HHHHHHHHHHHcCc
Confidence 6421 0 126999998 23332 24689999999999
Q ss_pred CCEEEEEcCCCCCCCcHHHHHHHHHHCCC-cEEEEecCc
Q 004787 228 GGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDVSN 265 (730)
Q Consensus 228 GGrLVYSTCSl~p~ENEaVV~~~L~~~~~-~velvd~s~ 265 (730)
||+||...-++ ||++...+.+++.++ ++.-+.++.
T Consensus 128 ggrlV~naitl---E~~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 128 GGRLVANAITL---ETLAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred CCeEEEEeecH---HHHHHHHHHHHHcCCceEEEEEeec
Confidence 99999988887 999999999999988 444444443
No 15
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.54 E-value=3.7e-14 Score=157.64 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=133.9
Q ss_pred cccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHH
Q 004787 19 PLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLE 98 (730)
Q Consensus 19 ~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae 98 (730)
++....+++.|.+++.. ++++|.+..|.........+ .+|.+|||+|||+|+.+++++.
T Consensus 182 ~~~v~E~g~~f~vdl~~------------------g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~ 240 (396)
T PRK15128 182 LLPIEEHGMKLLVDIQG------------------GHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM 240 (396)
T ss_pred cEEEEECCEEEEEeccc------------------ccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh
Confidence 34444566666665433 56789999998766555433 4689999999999999876542
Q ss_pred HHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 99 IIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 99 ~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
. +...|+++|+++..+..+++|++.++.. ++.+.+.|+..+..- .......
T Consensus 241 --~--------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~-----------------~~~~~~~ 293 (396)
T PRK15128 241 --G--------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT-----------------YRDRGEK 293 (396)
T ss_pred --C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH-----------------HHhcCCC
Confidence 2 2468999999999999999999999874 688888888664210 0011257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC--CCCCCcHHHHHHHHHHC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKC 254 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS--l~p~ENEaVV~~~L~~~ 254 (730)
||.|++|||+-.... ..+ .........++..|+++|++||.|+++||| +...+-..+|.++..+.
T Consensus 294 fDlVilDPP~f~~~k----~~l---------~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~ 360 (396)
T PRK15128 294 FDVIVMDPPKFVENK----SQL---------MGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDA 360 (396)
T ss_pred CCEEEECCCCCCCCh----HHH---------HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHc
Confidence 999999999744321 011 112233567888999999999999999999 55555568888888888
Q ss_pred CCcEEEEecC
Q 004787 255 EGSVELVDVS 264 (730)
Q Consensus 255 ~~~velvd~s 264 (730)
+..++++...
T Consensus 361 ~~~~~~l~~~ 370 (396)
T PRK15128 361 GRDVQFIEQF 370 (396)
T ss_pred CCeEEEEEEc
Confidence 8888888754
No 16
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.46 E-value=4.2e-13 Score=148.13 Aligned_cols=170 Identities=13% Similarity=0.070 Sum_probs=129.8
Q ss_pred hhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 51 LKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 51 l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
+....++|.+..|..+.....-.+. |.+|||+||.+|++|.++|.. +...|+++|+|...+..+++|
T Consensus 193 ~~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~g----------GA~~vt~VD~S~~al~~a~~N 259 (393)
T COG1092 193 LVDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALG----------GASEVTSVDLSKRALEWAREN 259 (393)
T ss_pred cCCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhc----------CCCceEEEeccHHHHHHHHHH
Confidence 3446789999999988776655443 999999999999999998643 245899999999999999999
Q ss_pred HHHcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccccc
Q 004787 131 TKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGN 208 (730)
Q Consensus 131 lkRlg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~ 208 (730)
++-+|.. .+.++.+|+..|-.- ......+||+|++|||- +.++++ ...
T Consensus 260 ~~LNg~~~~~~~~i~~Dvf~~l~~-----------------~~~~g~~fDlIilDPPs-----F~r~k~--------~~~ 309 (393)
T COG1092 260 AELNGLDGDRHRFIVGDVFKWLRK-----------------AERRGEKFDLIILDPPS-----FARSKK--------QEF 309 (393)
T ss_pred HHhcCCCccceeeehhhHHHHHHH-----------------HHhcCCcccEEEECCcc-----cccCcc--------cch
Confidence 9988864 477888888775321 12234689999999992 222222 223
Q ss_pred chHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcH--HHHHHHHHHCCCcEEEEec
Q 004787 209 GLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 209 ~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENE--aVV~~~L~~~~~~velvd~ 263 (730)
...+-..+|+..|+++|+|||+++.||||-+-..++ ..|..++...+..++++..
T Consensus 310 ~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~ 366 (393)
T COG1092 310 SAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEG 366 (393)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeec
Confidence 445667889999999999999999999998776665 6666777776667777664
No 17
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.37 E-value=7.4e-12 Score=126.26 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=108.8
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQ 147 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~ 147 (730)
+....+++.++++|||+|||+|..+.+++..+.. .+.|+|+|+++.+++.+++++++++ ..++.+.+.|+.
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~--------~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGE--------TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 3344578899999999999999999999887642 5799999999999999999999998 467888888775
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.+.. .....||+|+++.. .. ....++..+.++|+|
T Consensus 103 ~~l~--------------------~~~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~Lkp 137 (198)
T PRK00377 103 EILF--------------------TINEKFDRIFIGGG---SE----------------------KLKEIISASWEIIKK 137 (198)
T ss_pred hhHh--------------------hcCCCCCEEEECCC---cc----------------------cHHHHHHHHHHHcCC
Confidence 5321 01147999998431 00 114578899999999
Q ss_pred CCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecC
Q 004787 228 GGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (730)
Q Consensus 228 GGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s 264 (730)
||++|+.+|++ ++...+..+|++.+-.++++.+.
T Consensus 138 gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 138 GGRIVIDAILL---ETVNNALSALENIGFNLEITEVI 171 (198)
T ss_pred CcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999977 67778888888877667776654
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.35 E-value=1.8e-11 Score=121.28 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=111.0
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+....++..++.+|||+|||+|..+..++.. ...|+++|+++..++.++++++..+. ++.+...|...
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 77 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGK-----------GKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK 77 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc
Confidence 3334455667789999999999999888764 13799999999999999999987775 56667666543
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
++ ...||.|++++|+.....-.+ .+-|..+....+..-...+.++|.++.++|+||
T Consensus 78 ~~-----------------------~~~fD~Vi~n~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 78 GV-----------------------RGKFDVILFNPPYLPLEDDLR-RGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred cc-----------------------CCcccEEEECCCCCCCcchhc-ccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 21 147999999999854332111 122222222222233456788999999999999
Q ss_pred CEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 229 GRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 229 GrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
|++++++++. .++..+...|++.+-.++.+.
T Consensus 134 G~~~~~~~~~---~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQSSL---NGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEecc---CChHHHHHHHHhCCCeEEEEE
Confidence 9999998877 467778888888875555544
No 19
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.34 E-value=2.3e-12 Score=137.31 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=110.9
Q ss_pred ccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHH
Q 004787 18 RPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLL 97 (730)
Q Consensus 18 ~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLa 97 (730)
..+....+++.|.+++.. .+++|.|..|..+..+.... -.|.+|||+||.+|++|++++
T Consensus 84 ~~~~v~E~gl~f~v~l~~------------------gqktGlFlDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa 142 (286)
T PF10672_consen 84 EFFTVEENGLKFRVDLTD------------------GQKTGLFLDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAA 142 (286)
T ss_dssp SEEEEEETTEEEEEESSS------------------SSSTSS-GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHH
T ss_pred CceEEEECCEEEEEEcCC------------------CCcceEcHHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHH
Confidence 333345566666665533 57899999999987765444 358899999999999999875
Q ss_pred HHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccc
Q 004787 98 EIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL 175 (730)
Q Consensus 98 e~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (730)
. + +...|+++|.|...+..+++|++.+|.. .+.++..|+..+-.- . ....
T Consensus 143 ~--g--------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-----------------~-~~~~ 194 (286)
T PF10672_consen 143 A--G--------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-----------------L-KKGG 194 (286)
T ss_dssp H--T--------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-----------------H-HHTT
T ss_pred H--C--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-----------------H-hcCC
Confidence 4 2 2358999999999999999999988864 678888887664210 0 1236
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCc
Q 004787 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 243 (730)
Q Consensus 176 ~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~EN 243 (730)
+||.|++|||.-.-| ...+.+-..+|+.+|+++|++||.|+.||||-+-..+
T Consensus 195 ~fD~IIlDPPsF~k~----------------~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 195 RFDLIILDPPSFAKS----------------KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp -EEEEEE--SSEESS----------------TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CCCEEEECCCCCCCC----------------HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 899999999943322 1223455678999999999999999999999776655
No 20
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=1.5e-11 Score=146.17 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=119.7
Q ss_pred ccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004787 54 ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (730)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR 133 (730)
.+++|.+..|.....+...+ ..|.+|||+|||+|+.+++++.. + ...|+++|+|+..+..+++|++.
T Consensus 517 ~~~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~--G--------a~~V~~vD~s~~al~~a~~N~~~ 583 (702)
T PRK11783 517 YLDTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALG--G--------AKSTTTVDMSNTYLEWAERNFAL 583 (702)
T ss_pred CCcceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHC--C--------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 45678888887665444333 35889999999999999998763 1 35799999999999999999999
Q ss_pred cCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004787 134 MCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (730)
Q Consensus 134 lg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (730)
++.. ++.+...|+..+.. .....||.|++|||+-+.+. +..+.| ...
T Consensus 584 ng~~~~~v~~i~~D~~~~l~--------------------~~~~~fDlIilDPP~f~~~~--~~~~~~---------~~~ 632 (702)
T PRK11783 584 NGLSGRQHRLIQADCLAWLK--------------------EAREQFDLIFIDPPTFSNSK--RMEDSF---------DVQ 632 (702)
T ss_pred hCCCccceEEEEccHHHHHH--------------------HcCCCcCEEEECCCCCCCCC--ccchhh---------hHH
Confidence 9875 68888888765321 00257999999999876431 101111 223
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
..+..++..++++|+|||.|++++|+-+-..+ .+++.+.+..++++..
T Consensus 633 ~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~----~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 633 RDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD----EEGLAKLGLKAEEITA 680 (702)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCCccCChh----HHHHHhCCCeEEEEec
Confidence 45678899999999999999999998765544 5666666767777764
No 21
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.29 E-value=3.2e-11 Score=131.04 Aligned_cols=131 Identities=24% Similarity=0.229 Sum_probs=102.3
Q ss_pred cccccchhh------ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 64 EAVSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 64 d~~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|-|.+ ++++++|+.|||.|||+|+.+..++.+ ...|+|+|+|..++..++.|+++++..
T Consensus 162 ~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-----------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 162 KPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-----------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred CCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-----------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 345555543 357889999999999999988775442 368999999999999999999999988
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004787 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (730)
Q Consensus 138 nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I 217 (730)
++.+...|+..+|. ....||.|++||||....... ...+..++.++
T Consensus 231 ~i~~~~~D~~~l~~---------------------~~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~ 276 (329)
T TIGR01177 231 DFFVKRGDATKLPL---------------------SSESVDAIATDPPYGRSTTAA-------------GDGLESLYERS 276 (329)
T ss_pred CCeEEecchhcCCc---------------------ccCCCCEEEECCCCcCccccc-------------CCchHHHHHHH
Confidence 88888888877542 125799999999985432110 12344678899
Q ss_pred HHHHHhhccCCCEEEEEcCCCC
Q 004787 218 AMRGISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSl~ 239 (730)
|..+.+.|||||+++|.+++-.
T Consensus 277 l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 277 LEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHccCCcEEEEEEcCCC
Confidence 9999999999999999988753
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.27 E-value=1.3e-11 Score=112.77 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=88.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|.+|||+|||+|..+..+++.. ...++++|+|+..++++++++.+.+. .++.+.+.|...+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE------ 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH------
T ss_pred CCEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh------
Confidence 6799999999999999988773 36999999999999999999999886 578999998876431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
......||.|++|||......... ....+..++++++.++|++||++++.+|+
T Consensus 65 -------------~~~~~~~D~Iv~npP~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 65 -------------PLPDGKFDLIVTNPPYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -------------TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -------------hccCceeEEEEECCCCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 112378999999999865422111 11125668999999999999999999874
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=99.26 E-value=1.6e-10 Score=118.70 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=102.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++++|||+|||+|..+..++.. + .+.|+++|+++.++..++.|+++.+. ++.+.+.|...+.
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~-~---------~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~--- 97 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAA-G---------AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV--- 97 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc---
Confidence 35678999999999999998888753 1 35899999999999999999988876 4666666654310
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCC---CCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVP---CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvP---CSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
....||.|++|+| |+..+...+.+.. .|..+ ......+.+++..+.++||+||+
T Consensus 98 -------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 98 -------------------EFRPFDVVVSNPPYVPAPPDAPPSRGPAR--AWDAG--PDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred -------------------cCCCeeEEEECCCCCCCCcccccccChhH--hhhCC--CcHHHHHHHHHHHHHHhcCCCcE
Confidence 1257999999986 4444444444432 22211 12234567899999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
+++.+-+++ +-.-+...+++.+-.++.+.
T Consensus 155 l~~~~~~~~---~~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 155 LLLVQSELS---GVERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred EEEEEeccc---CHHHHHHHHHHCCCCeEEEE
Confidence 997654543 22334566666654554443
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.24 E-value=1e-10 Score=105.82 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=84.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccc-ccCCCcccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEA-QHFPGCRAN 155 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da-~~fp~~~~~ 155 (730)
|+.+|||+|||+|..+..+++.. +...|+|+|+|+..+..+++++.+.+ ..++.+.+.|+ ..+.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-----
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-----
Confidence 68999999999999999999853 35789999999999999999996655 47899999988 2211
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|+++. .+... ...+ ..+.++|.++.++|+|||+||.+|
T Consensus 67 -----------------~~~~~D~v~~~~-~~~~~----------------~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 -----------------FLEPFDLVICSG-FTLHF----------------LLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -----------------TSSCEEEEEECS-GSGGG----------------CCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------cCCCCCEEEECC-Ccccc----------------ccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 125699999843 10000 1111 456778999999999999999999
Q ss_pred C
Q 004787 236 C 236 (730)
Q Consensus 236 C 236 (730)
|
T Consensus 112 ~ 112 (112)
T PF12847_consen 112 C 112 (112)
T ss_dssp -
T ss_pred C
Confidence 8
No 25
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.24 E-value=1.9e-10 Score=120.78 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=105.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..++.... ...|+|+|+|+..+..++.|+++++. .+.+.|...+..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~---------~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~------ 147 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD---------GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP------ 147 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC---------CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc------
Confidence 346899999999999999987642 35899999999999999999988763 556666543210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccC-hhhhhhc---ccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PDIWRKW---NVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~-pd~~~~w---~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
. .....||.|++||||...+.+... |+....+ ....+......+.+|+..|.++|++||++++
T Consensus 148 ------------~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 148 ------------T-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred ------------h-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 001469999999999988877653 4432211 1122334456789999999999999999999
Q ss_pred EcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 234 STCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.+..- . ..-|..++++++-...++.
T Consensus 215 ~~~~~---~-~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 215 ETSER---Q-APLAVEAFARAGLIARVAS 239 (251)
T ss_pred EECcc---h-HHHHHHHHHHCCCCceeeE
Confidence 86542 3 3345667777665444443
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.18 E-value=9.2e-11 Score=115.74 Aligned_cols=144 Identities=22% Similarity=0.240 Sum_probs=98.6
Q ss_pred ccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec
Q 004787 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH 144 (730)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~ 144 (730)
.++.+....+...++.+|||+|||+|..+..++... +...|+++|+++..+..++.|+++++..++.+...
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~---------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG---------PDAKVTAVDINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS---------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence 455444445554578899999999999999988753 45689999999999999999999999888888887
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (730)
|..... ...+||.|+++||....+ ..-.....+++..|.++
T Consensus 89 d~~~~~----------------------~~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~ 129 (170)
T PF05175_consen 89 DLFEAL----------------------PDGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRY 129 (170)
T ss_dssp STTTTC----------------------CTTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHH
T ss_pred cccccc----------------------cccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHh
Confidence 764421 137899999999932222 11234567899999999
Q ss_pred ccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 225 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 225 LKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
|+|||+++...-+ ....+..+.+.. +.++.+.
T Consensus 130 Lk~~G~l~lv~~~--~~~~~~~l~~~f----~~~~~~~ 161 (170)
T PF05175_consen 130 LKPGGRLFLVINS--HLGYERLLKELF----GDVEVVA 161 (170)
T ss_dssp EEEEEEEEEEEET--TSCHHHHHHHHH----S--EEEE
T ss_pred ccCCCEEEEEeec--CCChHHHHHHhc----CCEEEEE
Confidence 9999988543222 223344444433 3555554
No 27
>PTZ00146 fibrillarin; Provisional
Probab=99.15 E-value=4.5e-10 Score=119.81 Aligned_cols=108 Identities=26% Similarity=0.404 Sum_probs=78.7
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.++||++|||+|||||.+|.+|++++.. +|.|+|+|+++.....|...++.. +|+.++..|+.. |..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~--------~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~-p~~- 195 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGP--------EGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY-PQK- 195 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCC--------CCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC-hhh-
Confidence 56899999999999999999999999853 689999999977665565555432 577888888754 210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH-HHHHHhhccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI-AMRGISLLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I-L~rAl~lLKpGGrLV 232 (730)
.......||+||+|+. .|+ |.++ +.+|.++|||||+++
T Consensus 196 ----------------y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 196 ----------------YRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred ----------------hhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEEE
Confidence 0001146999999984 111 3333 457888999999999
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
.+
T Consensus 235 I~ 236 (293)
T PTZ00146 235 IS 236 (293)
T ss_pred EE
Confidence 84
No 28
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.15 E-value=1.2e-09 Score=116.59 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=104.5
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~ 154 (730)
..++.+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++.. ++.+.+.|.....
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---- 185 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF---------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---- 185 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----
Confidence 3456799999999999999998763 3479999999999999999999999874 5888888764310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
....||.|++|||+...+.+...+..+. +.+.. +..-...+.+|+..+.++|++||+
T Consensus 186 ------------------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 186 ------------------PGRKYDLIVSNPPYVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred ------------------CCCCccEEEECCCCCCccchhhCCHhhh-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 1146999999999988776654433332 22221 112235778899999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
++.-+.. ...-|...+...+
T Consensus 247 l~~e~g~-----~~~~v~~~~~~~~ 266 (284)
T TIGR03533 247 LVVEVGN-----SMEALEEAYPDVP 266 (284)
T ss_pred EEEEECc-----CHHHHHHHHHhCC
Confidence 9875542 2235666676654
No 29
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=1.6e-10 Score=120.08 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=94.8
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+.+.||++|||+|||+|-.|..+++..+ +|.|+++|++..++..++..++..+..++.++.+||.++|-
T Consensus 46 ~~~~~~g~~vLDva~GTGd~a~~~~k~~g---------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf- 115 (238)
T COG2226 46 LLGIKPGDKVLDVACGTGDMALLLAKSVG---------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF- 115 (238)
T ss_pred hhCCCCCCEEEEecCCccHHHHHHHHhcC---------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC-
Confidence 34455999999999999999999999854 59999999999999999999998888789999999999772
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
+...||+|.+ +-| +|.-++ ..+.|+.+.+.|||||+++
T Consensus 116 --------------------~D~sFD~vt~-----~fg-lrnv~d----------------~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 116 --------------------PDNSFDAVTI-----SFG-LRNVTD----------------IDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred --------------------CCCccCEEEe-----eeh-hhcCCC----------------HHHHHHHHHHhhcCCeEEE
Confidence 2378999998 111 222222 2467999999999999776
Q ss_pred EEcCCCCCCCcHHH
Q 004787 233 YSTCSMNPVENEAV 246 (730)
Q Consensus 233 YSTCSl~p~ENEaV 246 (730)
- +.+++-.+.-+
T Consensus 154 v--le~~~p~~~~~ 165 (238)
T COG2226 154 V--LEFSKPDNPVL 165 (238)
T ss_pred E--EEcCCCCchhh
Confidence 5 56666666433
No 30
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.15 E-value=4.2e-10 Score=113.20 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=105.6
Q ss_pred EEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 004787 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI 140 (730)
Q Consensus 61 ~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~ 140 (730)
..|+..+.+....++++++++|||+|||+|..|..++... +.+.|+|+|+++.++..+++|+++++..++.
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~ 93 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVE 93 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeE
Confidence 4466666666667788999999999999999999987652 3589999999999999999999999988888
Q ss_pred EEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHH
Q 004787 141 VTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM 219 (730)
Q Consensus 141 vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~ 219 (730)
+.+.|+.. ++.+ ...+|+|.+|.. . . ...++.
T Consensus 94 ~~~~d~~~~~~~~---------------------~~~~d~v~~~~~----~------------------~----~~~~l~ 126 (196)
T PRK07402 94 VIEGSAPECLAQL---------------------APAPDRVCIEGG----R------------------P----IKEILQ 126 (196)
T ss_pred EEECchHHHHhhC---------------------CCCCCEEEEECC----c------------------C----HHHHHH
Confidence 88888753 1110 124677777531 0 0 145788
Q ss_pred HHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC-cEEEEec
Q 004787 220 RGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVDV 263 (730)
Q Consensus 220 rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~-~velvd~ 263 (730)
.+.++|+|||++++.++++ +.-..+.+.++..+. .++.+.+
T Consensus 127 ~~~~~LkpgG~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 127 AVWQYLKPGGRLVATASSL---EGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHhcCCCeEEEEEeecH---HHHHHHHHHHHhcCCCCceEEEE
Confidence 8999999999999998875 444556666765432 3444443
No 31
>PRK04266 fibrillarin; Provisional
Probab=99.12 E-value=7.5e-10 Score=114.64 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=81.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
++++||++|||+|||+|.+|..++..+. .|.|+|+|+++.++..+.+++++. .|+.+..+|+.. |...
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~---------~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~-~~~~ 135 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE---------EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK-PERY 135 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC---------CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC-cchh
Confidence 7889999999999999999999998753 489999999999999888777654 677888888754 2100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
... ...||.|++|.+ .| | ....+|..+.++|||||++|.
T Consensus 136 ----------------~~l-~~~~D~i~~d~~---------~p-----~----------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 136 ----------------AHV-VEKVDVIYQDVA---------QP-----N----------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ----------------hhc-cccCCEEEECCC---------Ch-----h----------HHHHHHHHHHHhcCCCcEEEE
Confidence 001 145999998765 11 1 012357889999999999998
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
+
T Consensus 175 ~ 175 (226)
T PRK04266 175 A 175 (226)
T ss_pred E
Confidence 5
No 32
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.12 E-value=1.4e-09 Score=112.40 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=103.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+.+|||+|||+|..+..++... +...|+++|+++..+..++.+++..+..++.+.+.|+...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-------- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-------- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--------
Confidence 34599999999999999998764 3468999999999999999999998888888888876541
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....||.|++|||+...+.+.........|.+.. +..-......++..+.++|++||++++
T Consensus 150 --------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 --------------LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred --------------CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 01257999999999998776543222222221111 112234456799999999999999998
Q ss_pred EcCCCCCCCcHHHHHHHHHHCC
Q 004787 234 STCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~ 255 (730)
.. +. ...+-+.++|++.+
T Consensus 216 ~~-~~---~~~~~~~~~l~~~g 233 (251)
T TIGR03534 216 EI-GY---DQGEAVRALFEAAG 233 (251)
T ss_pred EE-Cc---cHHHHHHHHHHhCC
Confidence 63 33 23445667777665
No 33
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.12 E-value=1.4e-10 Score=120.66 Aligned_cols=129 Identities=26% Similarity=0.385 Sum_probs=85.7
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.++.+++|.+|||+|||+|..|..|++.++ +.|.|+++|+++..+..+++.+++.+..++.++..|+.++|-
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 346788999999999999999998887654 368999999999999999999999988899999999998763
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
....||.|+| +-| +|.-++ +.+.|++..++|||||++
T Consensus 113 ---------------------~d~sfD~v~~-----~fg-lrn~~d----------------~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 113 ---------------------PDNSFDAVTC-----SFG-LRNFPD----------------RERALREMYRVLKPGGRL 149 (233)
T ss_dssp ----------------------TT-EEEEEE-----ES--GGG-SS----------------HHHHHHHHHHHEEEEEEE
T ss_pred ---------------------CCCceeEEEH-----Hhh-HHhhCC----------------HHHHHHHHHHHcCCCeEE
Confidence 2378999997 122 221111 345789999999999999
Q ss_pred EEEcCCCCCCCcHHHHHHHHHHC
Q 004787 232 VYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
+.- .++.-+|. ++..+..-+
T Consensus 150 ~il--e~~~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 150 VIL--EFSKPRNP-LLRALYKFY 169 (233)
T ss_dssp EEE--EEEB-SSH-HHHHHHHH-
T ss_pred EEe--eccCCCCc-hhhceeeee
Confidence 864 34445564 555555544
No 34
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.10 E-value=7.6e-10 Score=113.09 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=85.2
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+|+++++++|||+|||+|..|..|+...+. .|.|+++|+++..+..+++++++++..++.+...|+.....
T Consensus 71 ~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~--------~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 71 ELLELKPGMKVLEIGTGSGYQAAVLAEIVGR--------DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHhCCCCcCEEEEECCCccHHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 3568899999999999999999999887542 58899999999999999999999999899999888765211
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
....||+|++++++.. +....+++|+|||+|
T Consensus 143 ---------------------~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 143 ---------------------PLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGIL 173 (215)
T ss_pred ---------------------ccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEE
Confidence 1257999999876321 122346789999999
Q ss_pred EEE
Q 004787 232 VYS 234 (730)
Q Consensus 232 VYS 234 (730)
|..
T Consensus 174 v~~ 176 (215)
T TIGR00080 174 VMP 176 (215)
T ss_pred EEE
Confidence 975
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.09 E-value=2.3e-09 Score=107.31 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=107.2
Q ss_pred HHHHHhhcccccCcEEEccc-------cccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004787 46 RFHKFLKLENEIGNITRQEA-------VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (730)
Q Consensus 46 ~~~~~l~~~~~~G~i~~Qd~-------~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD 118 (730)
.|..||+...+..++++--. ..+-...++..-++.+|||+|||+|..+..++.+ . +.+.|+|+|
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~-~--------~~~~V~~iD 73 (181)
T TIGR00138 3 AYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA-R--------PELKLTLLE 73 (181)
T ss_pred HHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH-C--------CCCeEEEEe
Confidence 34455555666666665433 1111111222224889999999999988888754 2 357899999
Q ss_pred CCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004787 119 LDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (730)
Q Consensus 119 ~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~ 198 (730)
.++.++.++++++++++..++.+...|+..++. ...||.|+++. +
T Consensus 74 ~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----------------------~~~fD~I~s~~-------~------ 118 (181)
T TIGR00138 74 SNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----------------------EEQFDVITSRA-------L------ 118 (181)
T ss_pred CcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----------------------cCCccEEEehh-------h------
Confidence 999999999999999998889999988876421 25799999842 0
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC-CcEEEEec
Q 004787 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE-GSVELVDV 263 (730)
Q Consensus 199 ~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~-~~velvd~ 263 (730)
+. ...++..+.++|+|||+++.. .....+..+..+.+++. ..++.+++
T Consensus 119 ------------~~-~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 119 ------------AS-LNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred ------------hC-HHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeec
Confidence 00 123566678899999999975 35566777777777632 24666665
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.09 E-value=1.2e-09 Score=109.08 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=97.4
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+....|++.++.+|||+|||+|..+..++... +.+.|+++|+++..+..+++++++++..++.+.+.|+..
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQF---------PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 33345677889999999999999999998763 357999999999999999999998888778877776532
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
+ + ...||.|+++.. .+ .+ ..++..+.++|+||
T Consensus 93 -~-~---------------------~~~~D~v~~~~~---~~------------------~~----~~~l~~~~~~Lk~g 124 (187)
T PRK08287 93 -E-L---------------------PGKADAIFIGGS---GG------------------NL----TAIIDWSLAHLHPG 124 (187)
T ss_pred -h-c---------------------CcCCCEEEECCC---cc------------------CH----HHHHHHHHHhcCCC
Confidence 0 0 146999998531 01 01 24678889999999
Q ss_pred CEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 229 GRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 229 GrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
|+++++.... ++..-+..++++.+
T Consensus 125 G~lv~~~~~~---~~~~~~~~~l~~~g 148 (187)
T PRK08287 125 GRLVLTFILL---ENLHSALAHLEKCG 148 (187)
T ss_pred eEEEEEEecH---hhHHHHHHHHHHCC
Confidence 9999975443 77777788898876
No 37
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.08 E-value=7.1e-10 Score=116.09 Aligned_cols=140 Identities=26% Similarity=0.366 Sum_probs=97.3
Q ss_pred cccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
+.+.-||.-|.+-+ ...|++.||++||+.++|+|+.|..|+..++ |.|+|+..|....|+..++.|++++
T Consensus 19 rrtQIiYpkD~~~I--~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~--------p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 19 RRTQIIYPKDISYI--LMRLDIRPGSRVLEAGTGSGSLTHALARAVG--------PTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp SSS----HHHHHHH--HHHTT--TT-EEEEE--TTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCcceeeCchHHHH--HHHcCCCCCCEEEEecCCcHHHHHHHHHHhC--------CCeEEEccccCHHHHHHHHHHHHHc
Confidence 34445666665543 4578999999999999999999999999986 4799999999999999999999999
Q ss_pred CCC-ceEEEeccccc--CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004787 135 CTA-NLIVTNHEAQH--FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (730)
Q Consensus 135 g~~-nv~vt~~Da~~--fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (730)
|.. ++.+.+.|... |+. .....||+|++|.| + - |
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~--------------------~~~~~~DavfLDlp---------~--P---w--------- 125 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDE--------------------ELESDFDAVFLDLP---------D--P---W--------- 125 (247)
T ss_dssp TCCTTEEEEES-GGCG--ST--------------------T-TTSEEEEEEESS---------S--G---G---------
T ss_pred CCCCCceeEecceecccccc--------------------cccCcccEEEEeCC---------C--H---H---------
Confidence 985 78899988753 210 01257999999998 2 2 3
Q ss_pred HHHHHHHHHHHhhc-cCCCEEE-EEcCCCCCCCcHHHHHHHHHHCC
Q 004787 212 SLQVQIAMRGISLL-KVGGRIV-YSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 212 ~lQ~~IL~rAl~lL-KpGGrLV-YSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
..+.++.+.| |+||+|+ ||.|- |-=.-...+|++++
T Consensus 126 ----~~i~~~~~~L~~~gG~i~~fsP~i----eQv~~~~~~L~~~g 163 (247)
T PF08704_consen 126 ----EAIPHAKRALKKPGGRICCFSPCI----EQVQKTVEALREHG 163 (247)
T ss_dssp ----GGHHHHHHHE-EEEEEEEEEESSH----HHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHhcCCceEEEECCCH----HHHHHHHHHHHHCC
Confidence 1477888899 8999885 65552 22333455666765
No 38
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=4.5e-09 Score=103.59 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=102.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFP 150 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n--v~vt~~Da~~fp 150 (730)
.+...++.+|||+|||.|..+..++.. ...|+|+|+++..+..++.++...+..+ +.+..+|....
T Consensus 18 ~~~~~~~~~vLd~G~G~G~~~~~l~~~-----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 18 NAVDKKGDRVLEVGTGSGIVAIVAAKN-----------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred hhhccCCCEEEEEccccCHHHHHHHhh-----------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 344478889999999999999988775 2689999999999999999998877655 66666664331
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
.....||.|++++|+...+...... .|..+.......-......++.++.++|||||.
T Consensus 86 ---------------------~~~~~~d~vi~n~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 86 ---------------------FRGDKFDVILFNPPYLPTEEEEEWD-DWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ---------------------ccccCceEEEECCCcCCCCchhhhh-hhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 0113799999999986644322211 122222222222234567889999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
+++..+++. +..-+..++.+.+
T Consensus 144 ~~~~~~~~~---~~~~l~~~~~~~g 165 (188)
T PRK14968 144 ILLLQSSLT---GEDEVLEYLEKLG 165 (188)
T ss_pred EEEEEcccC---CHHHHHHHHHHCC
Confidence 998887763 3344566777765
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.6e-09 Score=117.03 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=101.6
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~ 158 (730)
.+|||+|||+|..+..++... |...|+|+|+|+..+..+++|+++++.. ++.+.+.|.....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~---------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-------- 197 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF---------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-------- 197 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC--------
Confidence 689999999999999988763 3578999999999999999999999874 5888888764311
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccc----cchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~----~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++|||+.+.+.+...+..+. +.|..+ ..-.....+|+..+.++|+|||++++-
T Consensus 198 --------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 198 --------------PGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred --------------CCCCccEEEECCCCCCccchhhcCHhhc-cCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0146999999999999877654443333 333221 122356788999999999999999874
Q ss_pred cCCCCCCCcHHHHHHHHHHCC
Q 004787 235 TCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~ 255 (730)
+= . +..-+...+...+
T Consensus 263 ~g---~--~~~~~~~~~~~~~ 278 (307)
T PRK11805 263 VG---N--SRVHLEEAYPDVP 278 (307)
T ss_pred EC---c--CHHHHHHHHhhCC
Confidence 22 2 2223666666543
No 40
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.06 E-value=6.8e-10 Score=113.67 Aligned_cols=105 Identities=22% Similarity=0.311 Sum_probs=81.7
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+|+++||++|||+++|+|..|+.|+.+++. .|.|+++|.++..+..+++++++++..|+.+..+|+..-
T Consensus 66 ~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~--------~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g-- 135 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGTGSGYQAALLAHLVGP--------VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG-- 135 (209)
T ss_dssp HHTTC-TT-EEEEES-TTSHHHHHHHHHHST--------TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT--
T ss_pred HHHhcCCCCEEEEecCCCcHHHHHHHHhcCc--------cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc--
Confidence 4678999999999999999999999998764 699999999999999999999999999999999987641
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
......||+|++.+.| ...|..| ++.|++||+|
T Consensus 136 -------------------~~~~apfD~I~v~~a~------~~ip~~l----------------------~~qL~~gGrL 168 (209)
T PF01135_consen 136 -------------------WPEEAPFDRIIVTAAV------PEIPEAL----------------------LEQLKPGGRL 168 (209)
T ss_dssp -------------------TGGG-SEEEEEESSBB------SS--HHH----------------------HHTEEEEEEE
T ss_pred -------------------cccCCCcCEEEEeecc------chHHHHH----------------------HHhcCCCcEE
Confidence 1123679999996543 3445544 4579999999
Q ss_pred EE
Q 004787 232 VY 233 (730)
Q Consensus 232 VY 233 (730)
|.
T Consensus 169 V~ 170 (209)
T PF01135_consen 169 VA 170 (209)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 41
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=5.2e-09 Score=109.94 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=103.3
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
...++.+|||+|||+|..+..++..+ +...|+|+|+++..+..++.+++.....++.+...|....
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----- 170 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER---------PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----- 170 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----
Confidence 45678899999999999999998874 3578999999999999999998834445788887775321
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc----cccchHHHHHHHHHHHHhhccCCCE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG----LGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~----~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
.....||.|++||||...+.+...+...+.+.+. .+......+.+++..+.++|++||+
T Consensus 171 -----------------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 171 -----------------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred -----------------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 0125799999999999877654222212222221 1223446778899999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
+++.+ .. .. ...+..++.+.+
T Consensus 234 l~~e~-g~--~~-~~~~~~~l~~~g 254 (275)
T PRK09328 234 LLLEI-GY--DQ-GEAVRALLAAAG 254 (275)
T ss_pred EEEEE-Cc--hH-HHHHHHHHHhCC
Confidence 99854 22 12 234566776654
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.02 E-value=4.4e-09 Score=96.18 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=85.5
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++++|||+|||+|..+..+++.+ +.+.|+++|.++.++..++++++.++..++.+...|+..+..
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV---------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 3466778999999999999999998864 347899999999999999999999888888888777654221
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....+||.|+++.+ .+ ...+++..+.++|+|||+++
T Consensus 84 -------------------~~~~~~D~v~~~~~------------------------~~-~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 84 -------------------DSLPEPDRVFIGGS------------------------GG-LLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred -------------------hhcCCCCEEEECCc------------------------ch-hHHHHHHHHHHHcCCCCEEE
Confidence 01147999998431 00 12378999999999999998
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
.+.
T Consensus 120 ~~~ 122 (124)
T TIGR02469 120 LNA 122 (124)
T ss_pred EEe
Confidence 764
No 43
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=109.85 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=71.0
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.++++++|++|||+|||+|..|..++++++. .|.|+++|+++..+..+++++++++..++.+.++|+...+.
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~--------~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--------SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 3568899999999999999999999888653 58999999999999999999999998899999998765211
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecC
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDV 184 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv 184 (730)
....||+|+++.
T Consensus 142 ---------------------~~~~fD~I~~~~ 153 (212)
T PRK13942 142 ---------------------ENAPYDRIYVTA 153 (212)
T ss_pred ---------------------cCCCcCEEEECC
Confidence 125799999854
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.00 E-value=3.1e-09 Score=107.88 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=93.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc-ccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA-QHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da-~~fp~~~~~~ 156 (730)
++.+|||+|||+|..+..++... |.+.|+|+|+++.++..+++++++.+..++.+.+.|+ ..++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~---------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~---- 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN---------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM---- 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC---------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----
Confidence 68899999999999999998764 3478999999999999999999988888899999888 543310
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.....||.|++..|. .|.. .....-...+..+|.++.++|||||+++++|+
T Consensus 107 ---------------~~~~~~D~V~~~~~~-----------p~~~---~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 107 ---------------FPDGSLDRIYLNFPD-----------PWPK---KRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ---------------cCccccceEEEECCC-----------CCCC---ccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 112579999986541 1111 00000111356789999999999999999875
Q ss_pred CCCCCCcHHHHHHHHH
Q 004787 237 SMNPVENEAVVAEILR 252 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~ 252 (730)
++..+..+++
T Consensus 158 ------~~~~~~~~~~ 167 (202)
T PRK00121 158 ------WEGYAEYMLE 167 (202)
T ss_pred ------CHHHHHHHHH
Confidence 4555555554
No 45
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.00 E-value=1.2e-08 Score=102.88 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
+++.+|||+|||+|..+..++... +.+.|+|+|+++.++..++++++.++..++.+...|+..++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~---------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----- 109 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR---------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----- 109 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-----
Confidence 458999999999999999888753 358999999999999999999999998888888888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...||.|+++. .+ .+ ..++..+.++|||||++++.-.
T Consensus 110 -----------------~~~fDlV~~~~----~~------------------~~----~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 110 -----------------EEKFDVVTSRA----VA------------------SL----SDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----------------CCCccEEEEcc----cc------------------CH----HHHHHHHHHhcCCCeEEEEEeC
Confidence 25799999842 00 01 3477888999999999998755
Q ss_pred CCCCCCcHHHHHHHHHHCCCcE
Q 004787 237 SMNPVENEAVVAEILRKCEGSV 258 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~~~v 258 (730)
. .....+.++.+..|..+
T Consensus 147 ~----~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 147 R----DPEEEIAELPKALGGKV 164 (187)
T ss_pred C----ChHHHHHHHHHhcCceE
Confidence 5 34455666666666554
No 46
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.5e-09 Score=110.06 Aligned_cols=137 Identities=21% Similarity=0.246 Sum_probs=103.2
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
.+--|+.-|.+ +.+..+++.||++|||.++|+|..|+.||..++ |.|+|+..|+...+++.+++|++.++
T Consensus 74 ~tQiIyPKD~~--~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg--------~~G~v~tyE~r~d~~k~A~~Nl~~~~ 143 (256)
T COG2519 74 RTQIIYPKDAG--YIVARLGISPGSRVLEAGTGSGALTAYLARAVG--------PEGHVTTYEIREDFAKTARENLSEFG 143 (256)
T ss_pred CCceecCCCHH--HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC--------CCceEEEEEecHHHHHHHHHHHHHhc
Confidence 33344444443 345678999999999999999999999998876 47999999999999999999999998
Q ss_pred CCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004787 136 TAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (730)
Q Consensus 136 ~~n-v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ 214 (730)
..+ +.+...|....- ....||+|++|.| +-|
T Consensus 144 l~d~v~~~~~Dv~~~~----------------------~~~~vDav~LDmp-----------~PW--------------- 175 (256)
T COG2519 144 LGDRVTLKLGDVREGI----------------------DEEDVDAVFLDLP-----------DPW--------------- 175 (256)
T ss_pred cccceEEEeccccccc----------------------cccccCEEEEcCC-----------ChH---------------
Confidence 876 666676665521 1148999999998 233
Q ss_pred HHHHHHHHhhccCCCEEE-EEcCCCCCCCcHHHHHHHHHHCC
Q 004787 215 VQIAMRGISLLKVGGRIV-YSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLV-YSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
+.|.++..+|+|||.++ |+.|. |.-.-+..+|++.+
T Consensus 176 -~~le~~~~~Lkpgg~~~~y~P~v----eQv~kt~~~l~~~g 212 (256)
T COG2519 176 -NVLEHVSDALKPGGVVVVYSPTV----EQVEKTVEALRERG 212 (256)
T ss_pred -HHHHHHHHHhCCCcEEEEEcCCH----HHHHHHHHHHHhcC
Confidence 36889999999999775 66664 33333445555553
No 47
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.4e-09 Score=107.81 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=86.1
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~f 149 (730)
...+|+++||++||+++||+|.-|+.|+++ .|+|+++|++..-+..++.|++++|..|+.+.++|+..
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-----------~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~- 131 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARL-----------VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK- 131 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHH-----------hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc-
Confidence 345789999999999999999999999988 36999999999999999999999999999999999876
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
.......||+|++.+- ...-|+.| ++.||+||
T Consensus 132 --------------------G~~~~aPyD~I~Vtaa------a~~vP~~L----------------------l~QL~~gG 163 (209)
T COG2518 132 --------------------GWPEEAPYDRIIVTAA------APEVPEAL----------------------LDQLKPGG 163 (209)
T ss_pred --------------------CCCCCCCcCEEEEeec------cCCCCHHH----------------------HHhcccCC
Confidence 1122378999998442 22334433 45799999
Q ss_pred EEEEE
Q 004787 230 RIVYS 234 (730)
Q Consensus 230 rLVYS 234 (730)
+||.-
T Consensus 164 rlv~P 168 (209)
T COG2518 164 RLVIP 168 (209)
T ss_pred EEEEE
Confidence 99974
No 48
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.97 E-value=1.3e-08 Score=108.49 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=99.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~ 156 (730)
++.+|||+|||+|..+..++... +...|+|+|+++..+..+++|+++++..+ +.+..+|.... +
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~---------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~---- 178 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEF---------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--L---- 178 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--C----
Confidence 33699999999999999988763 24689999999999999999999998764 88887775431 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++|||+.....+...++... +.|.. +..-.....+|+..+.++|++||.|+
T Consensus 179 ----------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 179 ----------------AGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ----------------cCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 0137999999999987654332222211 22211 12223477889999999999999999
Q ss_pred EEcCCCCCCCcHHHHHHHHH
Q 004787 233 YSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~ 252 (730)
+-++.- .-+ .|.+++.
T Consensus 242 ~e~g~~---q~~-~~~~~~~ 257 (284)
T TIGR00536 242 CEIGNW---QQK-SLKELLR 257 (284)
T ss_pred EEECcc---HHH-HHHHHHH
Confidence 876643 333 4455555
No 49
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=3.2e-09 Score=114.92 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
+..++.+|||+|||.|..+..++.. ...|+|+|+++..++.+++|++.++..++.+...|+..+...
T Consensus 170 ~~~~~~~VLDl~cG~G~~sl~la~~-----------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-- 236 (315)
T PRK03522 170 RELPPRSMWDLFCGVGGFGLHCATP-----------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-- 236 (315)
T ss_pred HhcCCCEEEEccCCCCHHHHHHHhc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--
Confidence 3346789999999999999998763 368999999999999999999999998899999988764310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++|||++|.+. .+...+.-++| ++|||+
T Consensus 237 ------------------~~~~~D~Vv~dPPr~G~~~-------------------------~~~~~l~~~~~-~~ivyv 272 (315)
T PRK03522 237 ------------------QGEVPDLVLVNPPRRGIGK-------------------------ELCDYLSQMAP-RFILYS 272 (315)
T ss_pred ------------------cCCCCeEEEECCCCCCccH-------------------------HHHHHHHHcCC-CeEEEE
Confidence 0136999999999877542 01112233456 689999
Q ss_pred cCCCC
Q 004787 235 TCSMN 239 (730)
Q Consensus 235 TCSl~ 239 (730)
+|.-.
T Consensus 273 sc~p~ 277 (315)
T PRK03522 273 SCNAQ 277 (315)
T ss_pred ECCcc
Confidence 99863
No 50
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=1.1e-08 Score=102.14 Aligned_cols=119 Identities=24% Similarity=0.237 Sum_probs=78.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
..+++|++|||+|||||+.|.+++..... .+.|+|+|+++.+ ...++.+++.|+...+.+.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~--------~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGG--------KGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLN 88 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCC--------CceEEEEeccccc-----------cCCCceEEEeeCCChhHHH
Confidence 34578999999999999999999887542 5789999999865 2345666776665421100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
. . ........||.|++|+++...|. |+...... ...+..++..+.++|+|||+++.
T Consensus 89 ~-----------l--~~~~~~~~~D~V~~~~~~~~~g~----------~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 89 K-----------I--RERVGDDKVDVVMSDAAPNISGY----------WDIDHLRS-IDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred H-----------H--HHHhCCCCccEEEcCCCCCCCCC----------ccccHHHH-HHHHHHHHHHHHHHccCCCEEEE
Confidence 0 0 00012357999999976544442 22111111 13467899999999999999998
Q ss_pred Ec
Q 004787 234 ST 235 (730)
Q Consensus 234 ST 235 (730)
..
T Consensus 145 ~~ 146 (188)
T TIGR00438 145 KV 146 (188)
T ss_pred EE
Confidence 63
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=9.2e-09 Score=104.61 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=82.3
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp 150 (730)
.+|+++++++|||+|||+|..|..++++++. .|.|+++|+++..+..+++++++++.. ++.+.++|+....
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~--------~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIER--------RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 3467889999999999999999999988643 579999999999999999999998875 4788888876521
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||+|+++... .+ +....++.|+|||+
T Consensus 138 ~---------------------~~~~fD~Ii~~~~~------~~----------------------~~~~l~~~L~~gG~ 168 (205)
T PRK13944 138 E---------------------KHAPFDAIIVTAAA------ST----------------------IPSALVRQLKDGGV 168 (205)
T ss_pred c---------------------cCCCccEEEEccCc------ch----------------------hhHHHHHhcCcCcE
Confidence 1 12579999997542 11 11234678999999
Q ss_pred EEEE
Q 004787 231 IVYS 234 (730)
Q Consensus 231 LVYS 234 (730)
||..
T Consensus 169 lvi~ 172 (205)
T PRK13944 169 LVIP 172 (205)
T ss_pred EEEE
Confidence 9874
No 52
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.92 E-value=9.4e-09 Score=105.39 Aligned_cols=112 Identities=25% Similarity=0.346 Sum_probs=87.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.++++++.+|||+|||+|..+..+++.+. +.+.|+++|+++..+..+++++++.+..++.+...|+..++.
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 110 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVG--------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF- 110 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC-
Confidence 56778999999999999999999988754 357999999999999999999988888888888888876431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++.-. ++..++ ..++|..+.++|+|||+++
T Consensus 111 --------------------~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --------------------CCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEE
Confidence 1257999997422 211111 1357889999999999998
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
..+
T Consensus 149 ~~~ 151 (231)
T TIGR02752 149 CLE 151 (231)
T ss_pred EEE
Confidence 753
No 53
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.90 E-value=1.4e-08 Score=114.45 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=84.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC-CCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF-PGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~f-p~~ 152 (730)
+++.++++|||+|||+|..++.++.. ...|+|+|+++..++.+++|++.++..|+.+...|+..+ +..
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~-----------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQ-----------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHh-----------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 45678899999999999999998865 358999999999999999999999999999999988653 110
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
......||.|++|||.+|.. ..++.. +..+++ +++|
T Consensus 357 ------------------~~~~~~~D~vi~dPPr~G~~------------------------~~~l~~-l~~l~~-~~iv 392 (431)
T TIGR00479 357 ------------------PWAGQIPDVLLLDPPRKGCA------------------------AEVLRT-IIELKP-ERIV 392 (431)
T ss_pred ------------------HhcCCCCCEEEECcCCCCCC------------------------HHHHHH-HHhcCC-CEEE
Confidence 01124699999999976533 123332 334778 5689
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
|.+|.-
T Consensus 393 yvsc~p 398 (431)
T TIGR00479 393 YVSCNP 398 (431)
T ss_pred EEcCCH
Confidence 999973
No 54
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.89 E-value=1.5e-08 Score=103.02 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=82.2
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+|+++++++|||+|||+|..|..++.+ .+.|+++|+++..+..+++++++++..++.+...|+....
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~-----------~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 139 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHL-----------VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW- 139 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHH-----------hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-
Confidence 4578899999999999999999877765 2579999999999999999999999888888888864310
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||+|+++.+|.. +.....++|+|||+|
T Consensus 140 --------------------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~l 171 (212)
T PRK00312 140 --------------------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGIL 171 (212)
T ss_pred --------------------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEE
Confidence 01257999999875321 122346789999999
Q ss_pred EEEcC
Q 004787 232 VYSTC 236 (730)
Q Consensus 232 VYSTC 236 (730)
+.+..
T Consensus 172 v~~~~ 176 (212)
T PRK00312 172 VAPVG 176 (212)
T ss_pred EEEEc
Confidence 98754
No 55
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.89 E-value=8.4e-09 Score=116.66 Aligned_cols=88 Identities=23% Similarity=0.181 Sum_probs=71.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+++.++++|||+|||+|..++.++.. .+.|+|+|+++..+..++.|++.++..++.+...|+..+..-
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~-----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~- 360 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQ-----------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD- 360 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHh-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh-
Confidence 46678999999999999999998775 258999999999999999999999988899999988653110
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
.......||.|++|||++|.
T Consensus 361 ----------------~~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 361 ----------------QPWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred ----------------hhhhcCCCCEEEECcCCcCh
Confidence 00112469999999998763
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.88 E-value=1.4e-08 Score=107.06 Aligned_cols=115 Identities=20% Similarity=0.312 Sum_probs=88.2
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+..+.+|++|||+|||+|..+.+++..++ +.+.|+++|+++.++..++++...++..++.+...|...++.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVG--------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 142 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence 345788999999999999988888877654 357999999999999999999988888888887777665431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
....||.|+++.- +...++ ..+++.+++++|||||+|
T Consensus 143 ---------------------~~~~fD~Vi~~~v------~~~~~d----------------~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 143 ---------------------ADNSVDVIISNCV------INLSPD----------------KERVFKEAFRVLKPGGRF 179 (272)
T ss_pred ---------------------CCCceeEEEEcCc------ccCCCC----------------HHHHHHHHHHHcCCCcEE
Confidence 1257999997531 111111 135789999999999999
Q ss_pred EEEcCC
Q 004787 232 VYSTCS 237 (730)
Q Consensus 232 VYSTCS 237 (730)
+.+.-.
T Consensus 180 ~i~~~~ 185 (272)
T PRK11873 180 AISDVV 185 (272)
T ss_pred EEEEee
Confidence 987543
No 57
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.88 E-value=1.7e-08 Score=97.17 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=89.3
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
+.+.+|||+|||.|..+..|+..+. +.+.|+++|+++..+..++..+++++..++.+...|...++.. +
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~--------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~-- 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN--------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L-- 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST--------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S--
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC--------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c--
Confidence 5688999999999999999986543 3588999999999999999999999999999999998875421 1
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
. ..||.|+++.++.. ......++.++.++|++||+++.+.+
T Consensus 71 ----------------~-~~~D~I~~~~~l~~----------------------~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 71 ----------------E-EKFDIIISNGVLHH----------------------FPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ----------------S-TTEEEEEEESTGGG----------------------TSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------C-CCeeEEEEcCchhh----------------------ccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 1 57999999765400 11224678899999999999998877
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
.
T Consensus 112 ~ 112 (152)
T PF13847_consen 112 N 112 (152)
T ss_dssp E
T ss_pred C
Confidence 7
No 58
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.86 E-value=5.2e-08 Score=108.68 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=98.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..++... +...|+|+|+|+..+..+++|+++++. ++.+.+.|......
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~---------p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l---- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER---------PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM---- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc----
Confidence 4567799999999999998887652 357899999999999999999998875 67788777643110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc----cccchHHHHHHHHHHHHhhccCCCEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG----LGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~----~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|++|||....+.....+.. .++.|. .+..--...++|+..+.+.|+|||.+
T Consensus 315 ----------------~~~~~FDLIVSNPPYI~~~e~~l~~~~-v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~l 377 (423)
T PRK14966 315 ----------------PSEGKWDIIVSNPPYIENGDKHLLQGD-LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFL 377 (423)
T ss_pred ----------------ccCCCccEEEECCCCCCcchhhhcchh-hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEE
Confidence 011469999999998766542111111 112221 11122234678999999999999998
Q ss_pred EEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 232 VYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
++-. .. ...+-|.+++++.+
T Consensus 378 ilEi---G~-~Q~e~V~~ll~~~G 397 (423)
T PRK14966 378 LLEH---GF-DQGAAVRGVLAENG 397 (423)
T ss_pred EEEE---Cc-cHHHHHHHHHHHCC
Confidence 7632 23 33445566676654
No 59
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.84 E-value=3.4e-08 Score=104.29 Aligned_cols=116 Identities=21% Similarity=0.320 Sum_probs=86.1
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH---cCCCceEEEeccccc
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR---MCTANLIVTNHEAQH 148 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR---lg~~nv~vt~~Da~~ 148 (730)
..++++++++|||+|||+|..+..+++..+ +.+.|+|+|+++.++..++.+... .+..++.+.+.|+..
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 356778999999999999999888877653 357999999999999998776532 234578888888877
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
+|. ....||.|++. .+++.-++ ..++|.++.+.||||
T Consensus 139 lp~---------------------~~~sfD~V~~~------~~l~~~~d----------------~~~~l~ei~rvLkpG 175 (261)
T PLN02233 139 LPF---------------------DDCYFDAITMG------YGLRNVVD----------------RLKAMQEMYRVLKPG 175 (261)
T ss_pred CCC---------------------CCCCEeEEEEe------cccccCCC----------------HHHHHHHHHHHcCcC
Confidence 552 12679999862 11211111 245789999999999
Q ss_pred CEEEEEcCCC
Q 004787 229 GRIVYSTCSM 238 (730)
Q Consensus 229 GrLVYSTCSl 238 (730)
|+++.++.+-
T Consensus 176 G~l~i~d~~~ 185 (261)
T PLN02233 176 SRVSILDFNK 185 (261)
T ss_pred cEEEEEECCC
Confidence 9999886653
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.81 E-value=1.7e-08 Score=101.82 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+.+|||+|||+|..+..+|... |.+.|+|+|++..++..+..++++.+..|+.+.+.|+..++...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~---------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---- 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN---------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---- 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh----
Confidence 45699999999999999998762 46799999999999999999999988889999999987643210
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.....||.|+++.| +.|.+-. ..... -++..++..+.++|||||+|.++|
T Consensus 83 --------------~~~~~~d~v~~~~p-----------dpw~k~~-h~~~r--~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 83 --------------FPDGSLSKVFLNFP-----------DPWPKKR-HNKRR--ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred --------------CCCCceeEEEEECC-----------CcCCCCC-ccccc--cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 11247999999876 2221100 00001 124678999999999999998876
No 61
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.81 E-value=1.8e-08 Score=109.31 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=96.1
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec-ccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~-Da~~fp 150 (730)
-+..+++|+.|||=+||+||....+. ++ ...|+++|++.+++.-++.|++.++...+.+... ||...|
T Consensus 191 NLa~v~~G~~vlDPFcGTGgiLiEag-l~----------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 191 NLARVKRGELVLDPFCGTGGILIEAG-LM----------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred HHhccccCCEeecCcCCccHHHHhhh-hc----------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 34578999999999999999876653 22 4799999999999999999999999887765555 888866
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
+. ...||.|.+|||.--. +...+..|..|..++|..+.++||+||+
T Consensus 260 -l~--------------------~~~vdaIatDPPYGrs-------------t~~~~~~l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 260 -LR--------------------DNSVDAIATDPPYGRS-------------TKIKGEGLDELYEEALESASEVLKPGGR 305 (347)
T ss_pred -CC--------------------CCccceEEecCCCCcc-------------cccccccHHHHHHHHHHHHHHHhhcCcE
Confidence 21 2369999999995222 1223345788999999999999999999
Q ss_pred EEEEcC
Q 004787 231 IVYSTC 236 (730)
Q Consensus 231 LVYSTC 236 (730)
+||.+-
T Consensus 306 ~vf~~p 311 (347)
T COG1041 306 IVFAAP 311 (347)
T ss_pred EEEecC
Confidence 999865
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.81 E-value=7.9e-08 Score=106.58 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=95.5
Q ss_pred ccCcEEEc--cccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004787 56 EIGNITRQ--EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (730)
Q Consensus 56 ~~G~i~~Q--d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR 133 (730)
..|.|+.. |..+.+....|....+.+|||+|||+|..+..++... |...|+++|+|+..+..+++|++.
T Consensus 204 ~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~---------P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 204 HANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred cCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 45666665 5556665555555556799999999999999888762 467999999999999999999987
Q ss_pred cCCC---ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch
Q 004787 134 MCTA---NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL 210 (730)
Q Consensus 134 lg~~---nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L 210 (730)
++.. ++.+...|+... ....+||.|+|+||..-...+ .
T Consensus 275 n~~~~~~~v~~~~~D~l~~----------------------~~~~~fDlIlsNPPfh~~~~~----------------~- 315 (378)
T PRK15001 275 NMPEALDRCEFMINNALSG----------------------VEPFRFNAVLCNPPFHQQHAL----------------T- 315 (378)
T ss_pred cCcccCceEEEEEcccccc----------------------CCCCCEEEEEECcCcccCccC----------------C-
Confidence 7643 456655554220 112479999999996422111 0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 211 HSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
...-.+++..+.+.|++||++...+-..
T Consensus 316 ~~ia~~l~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 316 DNVAWEMFHHARRCLKINGELYIVANRH 343 (378)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEEecC
Confidence 0123468999999999999998875443
No 63
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.81 E-value=2.5e-08 Score=104.18 Aligned_cols=153 Identities=16% Similarity=0.238 Sum_probs=111.0
Q ss_pred ccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecc
Q 004787 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 145 (730)
Q Consensus 67 Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~D 145 (730)
++|.+.+..+....+|||+|||.|...+.+|.... ...|+++|+++..+.++.++++-.+. ..+.|.+.|
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~---------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~D 103 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE---------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD 103 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC---------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhh
Confidence 34444555666789999999999999888877632 47899999999999999999988765 468999999
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
..+|.... ...+||.|+|+||.--.|.- ++++-.+.- ........-..+++.|.++|
T Consensus 104 i~~~~~~~-------------------~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~---Ar~e~~~~le~~i~~a~~~l 160 (248)
T COG4123 104 IKEFLKAL-------------------VFASFDLIICNPPYFKQGSR-LNENPLRAI---ARHEITLDLEDLIRAAAKLL 160 (248)
T ss_pred HHHhhhcc-------------------cccccCEEEeCCCCCCCccc-cCcChhhhh---hhhhhcCCHHHHHHHHHHHc
Confidence 98875421 12479999999999888865 333321110 00011112356899999999
Q ss_pred cCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 226 KpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
|+||++.+. +|-|.-.-+-..|++++
T Consensus 161 k~~G~l~~V----~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 161 KPGGRLAFV----HRPERLAEIIELLKSYN 186 (248)
T ss_pred cCCCEEEEE----ecHHHHHHHHHHHHhcC
Confidence 999999774 66666666677777754
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.81 E-value=7.6e-08 Score=105.59 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=92.3
Q ss_pred cccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe
Q 004787 64 EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 143 (730)
Q Consensus 64 d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~ 143 (730)
|..|.+....|......+|||+|||.|..+..++... |...|+++|+++..+..++.++++.+... .+..
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~ 251 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS---------PKIRLTLSDVSAAALESSRATLAANGLEG-EVFA 251 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCC-EEEE
Confidence 3444444444444455689999999999999888762 35689999999999999999999887643 4444
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004787 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (730)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (730)
.|.... ....||.|+++||- .+|. ......-.+++..+.+
T Consensus 252 ~D~~~~-----------------------~~~~fDlIvsNPPF-H~g~----------------~~~~~~~~~~i~~a~~ 291 (342)
T PRK09489 252 SNVFSD-----------------------IKGRFDMIISNPPF-HDGI----------------QTSLDAAQTLIRGAVR 291 (342)
T ss_pred cccccc-----------------------cCCCccEEEECCCc-cCCc----------------cccHHHHHHHHHHHHH
Confidence 443220 12579999999983 1111 0001223568999999
Q ss_pred hccCCCEEEEEcCCCCCCC
Q 004787 224 LLKVGGRIVYSTCSMNPVE 242 (730)
Q Consensus 224 lLKpGGrLVYSTCSl~p~E 242 (730)
+|||||+|++.++++.|.+
T Consensus 292 ~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 292 HLNSGGELRIVANAFLPYP 310 (342)
T ss_pred hcCcCCEEEEEEeCCCChH
Confidence 9999999999999988766
No 65
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.81 E-value=4.8e-08 Score=99.93 Aligned_cols=130 Identities=22% Similarity=0.171 Sum_probs=82.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+++|.+|||+|||||+.|..+++.++. .|.|+|+|+++- ...+++.+.++|+...+.+.-
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~--------~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~- 108 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGD--------KGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKA- 108 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCC--------CceEEEEecccc-----------cCCCCcEEEecCCCChHHHHH-
Confidence 478999999999999999999988642 589999999871 233568888888776321100
Q ss_pred CCCCCCCccccccccccccccccEEEecC-C-CCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDV-P-CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv-P-CSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
. ........||.|++|+ | ++|... .+. .....+...+|..+.++|||||++|.
T Consensus 109 -i-----------~~~~~~~~~D~V~S~~~~~~~g~~~----~d~---------~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 109 -L-----------LERVGDSKVQVVMSDMAPNMSGTPA----VDI---------PRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred -H-----------HHHhCCCCCCEEecCCCCccCCChH----HHH---------HHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0 0011236799999986 3 222110 010 11112235789999999999999998
Q ss_pred EcCCCCCCCcHHHHHHHHHH
Q 004787 234 STCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~ 253 (730)
.+ + ..+...-+...|++
T Consensus 164 ~~--~-~~~~~~~~l~~l~~ 180 (209)
T PRK11188 164 KV--F-QGEGFDEYLREIRS 180 (209)
T ss_pred EE--e-cCcCHHHHHHHHHh
Confidence 53 2 23443333344443
No 66
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.1e-07 Score=95.02 Aligned_cols=127 Identities=18% Similarity=0.283 Sum_probs=98.5
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+.+.-.|..|+|+|||+|..++..+- |+ ...|+|+|+|++.++.++.|+.+ +..++.++..|...|.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~-lG---------a~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAAL-LG---------ASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-- 106 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHh-cC---------CcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC--
Confidence 33445688999999999998776543 33 46999999999999999999999 4457889999888753
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
..||.|+.||| -|..+|++| +..|..|++. +.+|
T Consensus 107 ----------------------~~~dtvimNPP---FG~~~rhaD-----------------r~Fl~~Ale~----s~vV 140 (198)
T COG2263 107 ----------------------GKFDTVIMNPP---FGSQRRHAD-----------------RPFLLKALEI----SDVV 140 (198)
T ss_pred ----------------------CccceEEECCC---CccccccCC-----------------HHHHHHHHHh----hheE
Confidence 57899999999 566566655 2456777776 4779
Q ss_pred EEcCCCCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 233 YSTCSMNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~~~velv 261 (730)
| |++..-+++-+.......|+.+...
T Consensus 141 Y---siH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 141 Y---SIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred E---EeeccccHHHHHHHHHhcCCeEEEE
Confidence 9 5777779999999998888665443
No 67
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.4e-07 Score=100.80 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=98.2
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
+|||+|+|+|..++.++... +...|+|+|+|+..+..++.|++++|+.++.++..| -|..+
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~-------- 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPL-------- 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--ccccc--------
Confidence 79999999999999887763 457999999999999999999999998665555543 23322
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhh-c---ccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK-W---NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~-w---~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
..+||.|+++||.-..-.....|..... + -.....+ -..-.+|+..+...|++||.++.- +
T Consensus 174 -------------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG-l~~~~~i~~~a~~~l~~~g~l~le-~ 238 (280)
T COG2890 174 -------------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG-LEVYRRILGEAPDILKPGGVLILE-I 238 (280)
T ss_pred -------------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH-HHHHHHHHHhhHHHcCCCcEEEEE-E
Confidence 1489999999998665411112211100 0 0111122 346788999999999998877653 5
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 237 SMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+++ ....|.+++.+.+. +..+..
T Consensus 239 g~~---q~~~v~~~~~~~~~-~~~v~~ 261 (280)
T COG2890 239 GLT---QGEAVKALFEDTGF-FEIVET 261 (280)
T ss_pred CCC---cHHHHHHHHHhcCC-ceEEEE
Confidence 553 35556677776653 444443
No 68
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.78 E-value=2e-08 Score=102.24 Aligned_cols=101 Identities=32% Similarity=0.403 Sum_probs=74.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+++|+.||||+||-|.+++++|..- ....|+|+|+++..++.|++|++.+++.+ +.+.++|+..++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~---------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG---------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------
T ss_pred CCcceEEEEccCCccHHHHHHhhhc---------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---
Confidence 6789999999999999999998742 24689999999999999999999999876 7789999988753
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||+|+++.|-+. ...|..|+.+++.||.+-|
T Consensus 167 -------------------~~~~drvim~lp~~~--------------------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 167 -------------------EGKFDRVIMNLPESS--------------------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -------------------TT-EEEEEE--TSSG--------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred -------------------ccccCEEEECChHHH--------------------------HHHHHHHHHHhcCCcEEEC
Confidence 267999999887222 1246778999999999987
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=1.7e-07 Score=107.86 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=98.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~ 156 (730)
++.+|||+|||+|..+..++..+ +...|+|+|+|+..+..++.|+++++.. ++.+...|....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~---------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~------- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL---------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN------- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------
Confidence 45799999999999999887764 3579999999999999999999998864 577777765321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|+++||..........+.....+.|.. +..-.....+|+..+.++|++||.++
T Consensus 202 ---------------~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~ 266 (506)
T PRK01544 202 ---------------IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKII 266 (506)
T ss_pred ---------------CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence 01247999999999887654311111111222211 11122456789999999999999998
Q ss_pred EEcCCCCCCCcHHHHHHHHHHCC
Q 004787 233 YSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
+. +.. . ...-|..++.+.+
T Consensus 267 lE-ig~--~-q~~~v~~~~~~~g 285 (506)
T PRK01544 267 LE-IGF--K-QEEAVTQIFLDHG 285 (506)
T ss_pred EE-ECC--c-hHHHHHHHHHhcC
Confidence 74 443 2 3444566666543
No 70
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=4.3e-08 Score=110.39 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=77.0
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+++..++++|||+.||-|.+|+.||.. ...|+|+|+++..+..+++|++.++..|+.+...++..|..
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~-----------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKR-----------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhccc-----------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 3467789999999999999999999854 46899999999999999999999999999999999888653
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (730)
.. .....||.|++|||-+|.+
T Consensus 356 ~~------------------~~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 356 AW------------------WEGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred hc------------------cccCCCCEEEECCCCCCCC
Confidence 11 1235799999999988877
No 71
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=1e-07 Score=103.69 Aligned_cols=105 Identities=15% Similarity=0.306 Sum_probs=81.3
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.++++++++|||+|||+|..++.+++..+. .|.|+++|+++.++..+++++++++..++.+..+|+...+.
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~--------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~- 145 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP- 145 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-
Confidence 356889999999999999999999887542 47899999999999999999999999888888888755321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||+|+++.. +.. +....++.|++||+++
T Consensus 146 --------------------~~~~fD~Ii~~~g------~~~----------------------ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 146 --------------------EFAPYDVIFVTVG------VDE----------------------VPETWFTQLKEGGRVI 177 (322)
T ss_pred --------------------ccCCccEEEECCc------hHH----------------------hHHHHHHhcCCCCEEE
Confidence 1146999998642 111 1223456899999988
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
..
T Consensus 178 v~ 179 (322)
T PRK13943 178 VP 179 (322)
T ss_pred EE
Confidence 64
No 72
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.72 E-value=1.4e-07 Score=98.07 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=99.3
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHF 149 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~---~nv~vt~~Da~~f 149 (730)
.|++..+++|||||+|+|-.|+-|++.+..... ...+.|+.+|+++..+...++..++.+. .++.++.+||..+
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~---~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFG---DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccC---CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 578889999999999999999999988764211 1247999999999999999998877654 3488999999987
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
|. +...||+... +-| ||.-+++ .+.|+.|++.|||||
T Consensus 172 pF---------------------dd~s~D~yTi-----afG-IRN~th~----------------~k~l~EAYRVLKpGG 208 (296)
T KOG1540|consen 172 PF---------------------DDDSFDAYTI-----AFG-IRNVTHI----------------QKALREAYRVLKPGG 208 (296)
T ss_pred CC---------------------CCCcceeEEE-----ecc-eecCCCH----------------HHHHHHHHHhcCCCc
Confidence 62 2367888865 222 3322222 357899999999999
Q ss_pred EEEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 230 RIVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 230 rLVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
++. |=..+.+|-+.+..+-..+
T Consensus 209 rf~---cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 209 RFS---CLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred EEE---EEEccccccHHHHHHHHhh
Confidence 876 7766666655667777655
No 73
>PRK08317 hypothetical protein; Provisional
Probab=98.72 E-value=1.9e-07 Score=94.65 Aligned_cols=129 Identities=24% Similarity=0.288 Sum_probs=90.6
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.++..++.+.. ....++.+...|+..++.
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~- 83 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG--------PEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPF- 83 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCC-
Confidence 45678899999999999999999988753 35799999999999998877632 223567777777765431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++... + ..+ .-...++.++.++|+|||+|+
T Consensus 84 --------------------~~~~~D~v~~~~~------~-------~~~---------~~~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRV------L-------QHL---------EDPARALAEIARVLRPGGRVV 121 (241)
T ss_pred --------------------CCCCceEEEEech------h-------hcc---------CCHHHHHHHHHHHhcCCcEEE
Confidence 1257999997421 1 100 112457889999999999999
Q ss_pred EEcCCCC----CCCcHHHHHHHHHH
Q 004787 233 YSTCSMN----PVENEAVVAEILRK 253 (730)
Q Consensus 233 YSTCSl~----p~ENEaVV~~~L~~ 253 (730)
.+.+.+. ...+...+..++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (241)
T PRK08317 122 VLDTDWDTLVWHSGDRALMRKILNF 146 (241)
T ss_pred EEecCCCceeecCCChHHHHHHHHH
Confidence 8876532 22345555555544
No 74
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=103.10 Aligned_cols=131 Identities=22% Similarity=0.218 Sum_probs=96.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+.+|++||||+||-|.+|+.+|..- .-.|+|+|+++..++.|++|++.++..+ +...++|+..++..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g----------~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG----------RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC----------CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 5679999999999999999998751 2239999999999999999999999887 78899999886531
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...||+|++.-|- .+...+..|+++++.||.|.|-
T Consensus 254 -------------------~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 254 -------------------LGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred -------------------cccCCEEEeCCCC--------------------------cchhhHHHHHHHhhcCcEEEEE
Confidence 1679999986651 2234677899999999999875
Q ss_pred c-CCCCCCC--cHHHHHHHHHHCCCcEEEEec
Q 004787 235 T-CSMNPVE--NEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 235 T-CSl~p~E--NEaVV~~~L~~~~~~velvd~ 263 (730)
+ |--+..+ .+..+..+-.+.+-.++...+
T Consensus 289 ~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~ 320 (341)
T COG2520 289 EFVPEDDIEERPEKRIKSAARKGGYKVEVLKV 320 (341)
T ss_pred eccchhhcccchHHHHHHHHhhccCcceEEEE
Confidence 3 3322221 234455555554434555554
No 75
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.68 E-value=1.3e-07 Score=104.84 Aligned_cols=119 Identities=15% Similarity=0.278 Sum_probs=94.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
...+..|||+|||+|..++++|... |.+.++|+|++..++..+..++.+.+..|+.++++||..+...
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~--- 187 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL--- 187 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh---
Confidence 3457799999999999999998873 4689999999999999999999999999999999999764321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.....||+|++..|+ -|.+ ..-.++ .|..+|..+.++|++||++...|
T Consensus 188 ----------------~~~~s~D~I~lnFPd-----------PW~K---krHRRl--v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 188 ----------------LPSNSVEKIFVHFPV-----------PWDK---KPHRRV--ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ----------------CCCCceeEEEEeCCC-----------Cccc---cchhhc--cHHHHHHHHHHHcCCCcEEEEEE
Confidence 123679999986552 2322 111122 36889999999999999999999
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
.+.
T Consensus 236 D~~ 238 (390)
T PRK14121 236 DSE 238 (390)
T ss_pred ECH
Confidence 876
No 76
>PLN02244 tocopherol O-methyltransferase
Probab=98.68 E-value=1.8e-07 Score=102.49 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=83.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
+++.+|||+|||+|..+..|++.. .+.|+|+|+++..+..++++++..+. .++.+...|+..+|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~----------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~---- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY----------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF---- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC----
Confidence 688999999999999999998763 25899999999999999998888776 468888888876542
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++- +.+.+.++ ..+++..+.++|||||+|+.++
T Consensus 183 -----------------~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 -----------------EDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred -----------------CCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 12679999972 11111111 2467888999999999999887
Q ss_pred CC
Q 004787 236 CS 237 (730)
Q Consensus 236 CS 237 (730)
+.
T Consensus 224 ~~ 225 (340)
T PLN02244 224 WC 225 (340)
T ss_pred ec
Confidence 54
No 77
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.67 E-value=9.6e-08 Score=105.94 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=66.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
+..++.+|||++||.|..++.++.. ...|+|+|+++..++.+++|++.++..++.+.+.|+..+...
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~-----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-- 296 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP-----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-- 296 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--
Confidence 3346789999999999999988742 358999999999999999999999988899999888664210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCC
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (730)
....||.|++|||-.
T Consensus 297 ------------------~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 297 ------------------QMSAPELVLVNPPRR 311 (374)
T ss_pred ------------------cCCCCCEEEECCCCC
Confidence 013599999999954
No 78
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.67 E-value=3.2e-07 Score=99.85 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=78.5
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~ 153 (730)
.+.+|.+|||++||.|..+..|+.. .+.|+|+|.+++.+..++.++...+. .++.+...++..++.
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~-----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-- 194 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM-----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-- 194 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--
Confidence 3457889999999999988877652 36899999999999999877654433 467788877766542
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++ .+++.+-++ ...+|....++|||||.++.
T Consensus 195 -------------------~~~~FD~Vi~------~~vLeHv~d----------------~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 195 -------------------EGRKFDAVLS------LEVIEHVAN----------------PAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred -------------------ccCCCCEEEE------hhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEE
Confidence 1267999997 122221111 13578888899999999998
Q ss_pred Ec
Q 004787 234 ST 235 (730)
Q Consensus 234 ST 235 (730)
+|
T Consensus 234 st 235 (322)
T PLN02396 234 ST 235 (322)
T ss_pred EE
Confidence 86
No 79
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.64 E-value=2.3e-07 Score=97.05 Aligned_cols=110 Identities=22% Similarity=0.159 Sum_probs=83.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~ 154 (730)
+.++.+|||+|||+|..+..+++.+.. |.+.|+|+|.++.++..++.++.+.+.. ++.+...|+..+|.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---
Confidence 357889999999999998888876532 4689999999999999999999887764 67888887765431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccch-HHHHHHHHHHHHhhccCCCEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGL-HSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L-~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
..||.|++.. ++. .+ ...+..++.+..+.|||||.++.
T Consensus 124 --------------------~~~D~vv~~~------~l~---------------~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 124 --------------------ENASMVVLNF------TLQ---------------FLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred --------------------CCCCEEehhh------HHH---------------hCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3478887621 110 01 12246789999999999999999
Q ss_pred EcC
Q 004787 234 STC 236 (730)
Q Consensus 234 STC 236 (730)
+..
T Consensus 163 ~e~ 165 (247)
T PRK15451 163 SEK 165 (247)
T ss_pred EEe
Confidence 863
No 80
>PLN02476 O-methyltransferase
Probab=98.64 E-value=1.5e-07 Score=100.22 Aligned_cols=148 Identities=11% Similarity=0.129 Sum_probs=106.2
Q ss_pred cchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004787 39 RKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (730)
Q Consensus 39 rk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD 118 (730)
+..+.+..+.++-.. .....+........+...++...+..+||++|++.|.-|+.+|..+.. .|.|+++|
T Consensus 80 ~~~~~L~~l~e~a~~-~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~--------~G~V~TiE 150 (278)
T PLN02476 80 REPKILRQLREETSK-MRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPE--------SGCLVACE 150 (278)
T ss_pred CCCHHHHHHHHHHHh-ccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCC--------CCEEEEEE
Confidence 345566666665331 111233344444555556667777899999999999999999988753 68999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-ceEEEecccccCC-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccCh
Q 004787 119 LDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 196 (730)
Q Consensus 119 ~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~p 196 (730)
.+++++..++.++++.|.. ++.+..+|+.... .+. .......||.|++|++
T Consensus 151 ~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~----------------~~~~~~~FD~VFIDa~----------- 203 (278)
T PLN02476 151 RDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI----------------QNGEGSSYDFAFVDAD----------- 203 (278)
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH----------------hcccCCCCCEEEECCC-----------
Confidence 9999999999999999986 6889999887632 110 0011257999999986
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 197 DIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 197 d~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.......+..++++|++||.||.=-+
T Consensus 204 --------------K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 204 --------------KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred --------------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 02235567888999999999997533
No 81
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=2.5e-07 Score=96.99 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=80.5
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||+|||+|..+..+++. ...|+++|+++..+..++.+++..+. .++.+...|+..++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-----------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--- 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-----------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--- 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh---
Confidence 45679999999999999988774 35899999999999999999988886 4688888887664321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|+|... +. |- .-...+|..+.++|||||+|+...
T Consensus 109 -----------------~~~~fD~V~~~~v------l~--------~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 109 -----------------LETPVDLILFHAV------LE--------WV--------ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred -----------------cCCCCCEEEehhH------HH--------hh--------CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 1257999997322 10 10 011357889999999999998654
Q ss_pred CC
Q 004787 236 CS 237 (730)
Q Consensus 236 CS 237 (730)
.+
T Consensus 150 ~n 151 (255)
T PRK11036 150 YN 151 (255)
T ss_pred EC
Confidence 33
No 82
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.63 E-value=2e-07 Score=94.95 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|+.++.++.. ..+.|+++|+++..+..+++|++.++..++.+.+.|+..+..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr----------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----- 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR----------YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----- 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-----
Confidence 46789999999999998865433 136899999999999999999999998888888888765311
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
.....||.|++|||.
T Consensus 117 ---------------~~~~~fDlV~~DPPy 131 (199)
T PRK10909 117 ---------------QPGTPHNVVFVDPPF 131 (199)
T ss_pred ---------------hcCCCceEEEECCCC
Confidence 011459999999993
No 83
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.63 E-value=1.1e-07 Score=104.82 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=63.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
++++.++ .|||++||.|.+|+.||.. ...|+|+|++...+..+++|++.++..|+.+...++..+...
T Consensus 192 ~l~~~~~-~vlDlycG~G~fsl~la~~-----------~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 192 WLDLSKG-DVLDLYCGVGTFSLPLAKK-----------AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HCTT-TT-EEEEES-TTTCCHHHHHCC-----------SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred HhhcCCC-cEEEEeecCCHHHHHHHhh-----------CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence 4566666 8999999999999999765 468999999999999999999999999999998877665321
Q ss_pred ccCC-CCCCCCccccccccccccccccEEEecCCCCCCC
Q 004787 153 RANK-NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (730)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (730)
.... .... ..........+|.|++|||-+|.+
T Consensus 260 ~~~~r~~~~------~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 260 LAKAREFNR------LKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp HCCS-GGTT------GGGS-GGCTTESEEEE---TT-SC
T ss_pred HHhhHHHHh------hhhhhhhhcCCCEEEEcCCCCCch
Confidence 0000 0000 000011224689999999988866
No 84
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.62 E-value=3.9e-07 Score=92.20 Aligned_cols=108 Identities=17% Similarity=0.035 Sum_probs=79.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||+|||+|..+..|++. ...|+|+|+++..++.++.+++..+..++.+...|...++.
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~-----------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 92 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAAN-----------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-- 92 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc--
Confidence 44556789999999999999998864 25899999999999999998888887777777766554321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++-. ++.. +. ......++.+..++|+|||++++
T Consensus 93 --------------------~~~fD~I~~~~------~~~~-------~~-------~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 --------------------DGEYDFILSTV------VLMF-------LE-------AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred --------------------CCCcCEEEEec------chhh-------CC-------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 14699999721 1100 00 11345688999999999999765
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
.
T Consensus 133 ~ 133 (197)
T PRK11207 133 V 133 (197)
T ss_pred E
Confidence 4
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.62 E-value=6e-07 Score=94.12 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=82.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~ 154 (730)
+.++.+|||++||+|..+..++.. + .+.|+|+|+|+.++..+++|+++.++. .+.+...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g---------~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---------- 176 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G---------AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---------- 176 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC----------
Confidence 468999999999999877655432 2 347999999999999999999887762 2211100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...||.|+++.. ......++..+.++|||||+++.|
T Consensus 177 -------------------~~~fD~Vvani~-------------------------~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 177 -------------------DLKADVIVANIL-------------------------ANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -------------------CCCcCEEEEcCc-------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 126999998531 112346788899999999999998
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.... +...-+...++++| ++++.
T Consensus 213 gi~~---~~~~~v~~~l~~~G--f~~~~ 235 (250)
T PRK00517 213 GILE---EQADEVLEAYEEAG--FTLDE 235 (250)
T ss_pred ECcH---hhHHHHHHHHHHCC--CEEEE
Confidence 6543 44555666777765 44443
No 86
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.61 E-value=8.3e-08 Score=96.43 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~ 156 (730)
+|.+|||+|||+|+..+.++.. +...|+.+|.+.+.+..+++|++.++..+ +.+...|+..+-.-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR----------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~---- 107 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR----------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLK---- 107 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHH----
T ss_pred CCCeEEEcCCccCccHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHh----
Confidence 5889999999999988765443 35699999999999999999999999876 88888886653210
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
.......||.|++|||.
T Consensus 108 -------------~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 108 -------------LAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp -------------HHHCTS-EEEEEE--ST
T ss_pred -------------hcccCCCceEEEECCCc
Confidence 00123789999999994
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.61 E-value=5.5e-07 Score=96.44 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=85.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
..++.+|||+|||+|..+..++.. + .+.|+|+|+|+.++..+++|+.+.+... +.+...+...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g---------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~------ 220 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G---------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ------ 220 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc------
Confidence 457899999999999988766542 2 3689999999999999999999887653 3333332111
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.....||.|+++.. .....+++..+.++|||||+|+.|
T Consensus 221 -----------------~~~~~fDlVvan~~-------------------------~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 221 -----------------PIEGKADVIVANIL-------------------------AEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -----------------ccCCCceEEEEecC-------------------------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11257999998642 011246788899999999999998
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
...- +...-|.+++++. ++++.
T Consensus 259 gi~~---~~~~~v~~~~~~~---f~~~~ 280 (288)
T TIGR00406 259 GILE---TQAQSVCDAYEQG---FTVVE 280 (288)
T ss_pred eCcH---hHHHHHHHHHHcc---Cceee
Confidence 6532 3444455556542 55544
No 88
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.61 E-value=3.6e-07 Score=95.16 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=90.7
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQ 147 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~ 147 (730)
+..+++...++.+|||+|+|.|.-++.|+..+.. .|+|+++|++++++..+++++++.|.. ++.+..+|+.
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~--------~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPE--------DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 3445566778889999999999999999887643 689999999999999999999999975 5888888886
Q ss_pred cCC-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004787 148 HFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (730)
Q Consensus 148 ~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (730)
... .+. .......||.|++|+.= .....++..++++|+
T Consensus 131 ~~L~~l~----------------~~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 131 SALDQLL----------------NNDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLVK 169 (234)
T ss_pred HHHHHHH----------------hCCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcC
Confidence 531 100 00012579999998750 112356788899999
Q ss_pred CCCEEEEEcCC
Q 004787 227 VGGRIVYSTCS 237 (730)
Q Consensus 227 pGGrLVYSTCS 237 (730)
|||.||.-.+-
T Consensus 170 ~GG~ii~dn~l 180 (234)
T PLN02781 170 VGGIIAFDNTL 180 (234)
T ss_pred CCeEEEEEcCC
Confidence 99999975443
No 89
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=3.7e-07 Score=95.66 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=100.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~ 156 (730)
.+..+||+|||+|..++.++..| |.+.|+|+|++...+.++.+|++|+++.+ +.|.+++.+.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L---------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~-------- 210 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGL---------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES-------- 210 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcC---------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc--------
Confidence 35579999999999998887665 46899999999999999999999998754 6677664332
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-Chhhhhhcccc----cccchHHHHHHHHHHHHhhccCCCEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVG----LGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~----~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
+...+......++|.++++||+-.+--++. .|++ +.+.+. .+..--..-..+..-|.++|++||.+
T Consensus 211 --------d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV-~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 211 --------DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV-RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred --------ccccccccccCceeEEecCCCcccccchhhcCchh-eecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 011122234478999999999866554432 2332 222221 12222345566788899999999999
Q ss_pred EEEcCCCCCCCcHHHHHHHHH
Q 004787 232 VYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~ 252 (730)
.+.+--. .+....|...+.
T Consensus 282 ~le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 282 QLELVER--KEHSYLVRIWMI 300 (328)
T ss_pred EEEeccc--ccCcHHHHHHHH
Confidence 9976533 344456666654
No 90
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.61 E-value=1.1e-07 Score=105.68 Aligned_cols=101 Identities=23% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||++||+|..++.++...+ ...|+|||+++..++.+++|++.++..++.+.+.|+..+..
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~---------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~------ 121 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG---------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH------ 121 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh------
Confidence 357999999999999999876532 24899999999999999999999999888889998866421
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
. ...||.|++||| |.+ ...|..|++.+++||.|.+|
T Consensus 122 --------------~-~~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 --------------E-ERKFDVVDIDPF--GSP------------------------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------------h-cCCCCEEEECCC--CCc------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 0 146999999998 333 13577788889996655444
No 91
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.1e-07 Score=94.52 Aligned_cols=135 Identities=25% Similarity=0.422 Sum_probs=100.6
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~f 149 (730)
...|++.||.+||..+.|+||.+..|+..+. |+|+|+.+|....|++.+.+..++.+.. |+.++..|...-
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~--------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~ 169 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVA--------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS 169 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhC--------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC
Confidence 3568999999999999999999999999885 6899999999999999999999999874 688887776541
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
- .......+|.|++|.| +| | ..+-+|+..||.+|
T Consensus 170 G-------------------F~~ks~~aDaVFLDlP---------aP-----w-------------~AiPha~~~lk~~g 203 (314)
T KOG2915|consen 170 G-------------------FLIKSLKADAVFLDLP---------AP-----W-------------EAIPHAAKILKDEG 203 (314)
T ss_pred C-------------------ccccccccceEEEcCC---------Ch-----h-------------hhhhhhHHHhhhcC
Confidence 1 0112478999999998 23 2 12445666777766
Q ss_pred -EEEEEcCCCCC-CCcHHHHHHHHHHCCC-cEEEEec
Q 004787 230 -RIVYSTCSMNP-VENEAVVAEILRKCEG-SVELVDV 263 (730)
Q Consensus 230 -rLVYSTCSl~p-~ENEaVV~~~L~~~~~-~velvd~ 263 (730)
++ ||++| +|--+--.++|+.++. +++.+++
T Consensus 204 ~r~----csFSPCIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 204 GRL----CSFSPCIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred ceE----EeccHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 55 77776 4444555667777662 4555554
No 92
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.56 E-value=5.8e-07 Score=93.66 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=78.3
Q ss_pred ccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004787 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (730)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt 142 (730)
|..........|...++.+|||+|||+|..+..++.. ...|+++|+++.++..++.+.. ...+.
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~l~~a~~~~~-----~~~~~ 90 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-----------GSQVTALDLSPPMLAQARQKDA-----ADHYL 90 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCC-----CCCEE
Confidence 4444443344455556789999999999988877542 3689999999999887766432 23445
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
..|+..+|. ....||.|++..+ + .|... ...+|.++.
T Consensus 91 ~~d~~~~~~---------------------~~~~fD~V~s~~~------l--------~~~~d--------~~~~l~~~~ 127 (251)
T PRK10258 91 AGDIESLPL---------------------ATATFDLAWSNLA------V--------QWCGN--------LSTALRELY 127 (251)
T ss_pred EcCcccCcC---------------------CCCcEEEEEECch------h--------hhcCC--------HHHHHHHHH
Confidence 666655431 1257999997432 1 12111 246789999
Q ss_pred hhccCCCEEEEEcCC
Q 004787 223 SLLKVGGRIVYSTCS 237 (730)
Q Consensus 223 ~lLKpGGrLVYSTCS 237 (730)
++|+|||+++++|-.
T Consensus 128 ~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 128 RVVRPGGVVAFTTLV 142 (251)
T ss_pred HHcCCCeEEEEEeCC
Confidence 999999999998643
No 93
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.56 E-value=4.2e-07 Score=95.01 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=77.5
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+.+.++.+|||+|||+|..+..+++.. +.+.|+++|+++.++..++.+. +++.+...|+..++.
T Consensus 26 ~~~~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~- 90 (258)
T PRK01683 26 RVPLENPRYVVDLGCGPGNSTELLVERW---------PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP- 90 (258)
T ss_pred hCCCcCCCEEEEEcccCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC-
Confidence 4456789999999999999999998764 3579999999999988776542 456667777654321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++... + .|-+ -+.+++.++.++|||||+++
T Consensus 91 ---------------------~~~fD~v~~~~~------l--------~~~~--------d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 91 ---------------------PQALDLIFANAS------L--------QWLP--------DHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred ---------------------CCCccEEEEccC------h--------hhCC--------CHHHHHHHHHHhcCCCcEEE
Confidence 147999998542 1 1111 13568899999999999998
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
.++
T Consensus 128 ~~~ 130 (258)
T PRK01683 128 VQM 130 (258)
T ss_pred EEC
Confidence 863
No 94
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.5e-06 Score=93.00 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=114.2
Q ss_pred ccccCcEEEc--cccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004787 54 ENEIGNITRQ--EAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (730)
Q Consensus 54 ~~~~G~i~~Q--d~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl 131 (730)
-+..|.|+.. |..|.+...-|...++.+|||+|||-|-..+.+++. .|...|+-+|+|...++..+.|+
T Consensus 132 ~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~---------~p~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 132 KTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK---------SPQAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred EeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh---------CCCCeEEEEecCHHHHHHHHHhH
Confidence 4567888875 678988888888888889999999999999999887 35689999999999999999999
Q ss_pred HHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004787 132 KRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (730)
Q Consensus 132 kRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (730)
+.++..+..+...|... . . ..+||.|+++||-. .| ..-.+
T Consensus 203 ~~N~~~~~~v~~s~~~~--~--------------------v-~~kfd~IisNPPfh-~G----------------~~v~~ 242 (300)
T COG2813 203 AANGVENTEVWASNLYE--P--------------------V-EGKFDLIISNPPFH-AG----------------KAVVH 242 (300)
T ss_pred HHcCCCccEEEEecccc--c--------------------c-cccccEEEeCCCcc-CC----------------cchhH
Confidence 99988875333333211 1 1 14899999999932 22 12334
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 212 SLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.+-.+|+..|.+.|++||.|-...-..-|. ...|++.-+.++.+.
T Consensus 243 ~~~~~~i~~A~~~L~~gGeL~iVan~~l~y------~~~L~~~Fg~v~~la 287 (300)
T COG2813 243 SLAQEIIAAAARHLKPGGELWIVANRHLPY------EKKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEcCCCCh------HHHHHHhcCCEEEEE
Confidence 555689999999999999877665555444 344555545666654
No 95
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.54 E-value=2.9e-07 Score=101.72 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~f 149 (730)
+.+|||+|||+|..++.++.. ...|+|+|++...+..+++|++.++..|+.+...|+..+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-----------~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-----------FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 357999999999999977764 358999999999999999999999998999999998764
No 96
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.54 E-value=2.2e-07 Score=80.50 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=69.1
Q ss_pred EeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCC
Q 004787 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (730)
Q Consensus 83 LDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~ 162 (730)
||++||+|..+..+++. + ...|+++|+++..++.++++.+. .++.+...|+..+|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~---------~~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l~~----------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G---------GASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDLPF----------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T---------TCEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTSSSS-----------
T ss_pred CEecCcCCHHHHHHHhc-c---------CCEEEEEeCCHHHHHHHHhcccc---cCchheeehHHhCcc-----------
Confidence 89999999999999876 2 47999999999999888775543 334577888777652
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 163 ~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++-- .|..+ .-+.++++++.++|||||+++.
T Consensus 57 ----------~~~sfD~v~~~~-------------~~~~~---------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ----------PDNSFDVVFSNS-------------VLHHL---------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----------TT-EEEEEEES-------------HGGGS---------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------cccccccccccc-------------ceeec---------cCHHHHHHHHHHHcCcCeEEeC
Confidence 237899999711 12111 3457899999999999999974
No 97
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.52 E-value=1.6e-06 Score=94.21 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=75.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~fp~~ 152 (730)
+++.+|.+|||++||+|..+..++.. ....|+|+|.+...+..+....+..+ ..++.+...+...+|.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~----------g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~- 185 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGH----------GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE- 185 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHc----------CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-
Confidence 46678999999999999988777643 13589999999987765433222222 2345555555544331
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++ .|++-+.++. ...|..+.+.|||||+||
T Consensus 186 ---------------------~~~FD~V~s------~gvL~H~~dp----------------~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 186 ---------------------LYAFDTVFS------MGVLYHRKSP----------------LEHLKQLKHQLVIKGELV 222 (314)
T ss_pred ---------------------CCCcCEEEE------cchhhccCCH----------------HHHHHHHHHhcCCCCEEE
Confidence 146999997 3444222211 347888999999999999
Q ss_pred EEcCCCCC
Q 004787 233 YSTCSMNP 240 (730)
Q Consensus 233 YSTCSl~p 240 (730)
.+|..+..
T Consensus 223 letl~i~g 230 (314)
T TIGR00452 223 LETLVIDG 230 (314)
T ss_pred EEEEEecC
Confidence 98865543
No 98
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.52 E-value=2e-06 Score=93.75 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=76.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~fp~ 151 (730)
.+++.+|.+|||++||+|..+..++.. + .+.|+++|.+...+.......+..+ ..++.+...++..+|.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~-g---------~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGA-G---------AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHc-C---------CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 345557899999999999999988775 1 3579999999877654333323333 2467777777666542
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
...||.|+| .|++.+..+ ...+|.++.+.|+|||++
T Consensus 187 ----------------------~~~FD~V~s------~~vl~H~~d----------------p~~~L~~l~~~LkpGG~l 222 (322)
T PRK15068 187 ----------------------LKAFDTVFS------MGVLYHRRS----------------PLDHLKQLKDQLVPGGEL 222 (322)
T ss_pred ----------------------cCCcCEEEE------CChhhccCC----------------HHHHHHHHHHhcCCCcEE
Confidence 257999996 233322111 135788999999999999
Q ss_pred EEEcC
Q 004787 232 VYSTC 236 (730)
Q Consensus 232 VYSTC 236 (730)
|.+|-
T Consensus 223 vl~~~ 227 (322)
T PRK15068 223 VLETL 227 (322)
T ss_pred EEEEE
Confidence 98864
No 99
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.51 E-value=6.1e-07 Score=95.59 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=80.2
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH 148 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~ 148 (730)
....|+++||++|||++||-|+.+..+|+..+ ..|+++.+|..-...++.++++.|+. .+.+...|...
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG----------CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34567899999999999999999999998852 58999999999999999999999976 47777777554
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
++ ..||+|++ -|++-+-.. ..-...+.++.++||||
T Consensus 124 ~~------------------------~~fD~IvS------i~~~Ehvg~--------------~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 LP------------------------GKFDRIVS------IEMFEHVGR--------------KNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ---------------------------S-SEEEE------ESEGGGTCG--------------GGHHHHHHHHHHHSETT
T ss_pred cC------------------------CCCCEEEE------EechhhcCh--------------hHHHHHHHHHHHhcCCC
Confidence 32 37999986 233322110 11245688899999999
Q ss_pred CEEEEEcCCC
Q 004787 229 GRIVYSTCSM 238 (730)
Q Consensus 229 GrLVYSTCSl 238 (730)
|+++.-+++.
T Consensus 160 G~~~lq~i~~ 169 (273)
T PF02353_consen 160 GRLVLQTITH 169 (273)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEeccc
Confidence 9998766655
No 100
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.50 E-value=1.3e-06 Score=90.57 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=81.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||++||+|..+..+++.+.. |.+.|+++|+++..+..++++++..+. .++.+...|+..++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----
Confidence 57889999999999999999887532 367999999999999999999887654 467888887766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
..+|.|++.-. +. .+. ......++.++.+.|+|||+++.+.
T Consensus 121 -------------------~~~d~v~~~~~------l~-------~~~-------~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 -------------------KNASMVILNFT------LQ-------FLP-------PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred -------------------CCCCEEeeecc------hh-------hCC-------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 34787775211 10 000 0123578999999999999999874
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.50 E-value=1.2e-06 Score=75.10 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=77.8
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
+|||+|||+|..+.+++. . +...++++|.++.....+.+........++.+...|...+..
T Consensus 1 ~ildig~G~G~~~~~~~~--~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS--G--------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc--C--------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---------
Confidence 489999999999888876 1 247999999999999888765444455667777776655321
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.....||.|+++.+|... ...+..++..+.++|++||.++++
T Consensus 62 -----------~~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 -----------EADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----------ccCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 112579999999886542 334567889999999999999986
No 102
>PHA03412 putative methyltransferase; Provisional
Probab=98.50 E-value=5.5e-07 Score=93.67 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=79.4
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
..+.+|||+|||+|..+..++..+.. .+...|+|+|+|+..+..++.++ .++.+.+.|+..++.
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~------~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----- 111 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMY------AKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----- 111 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhccc------CCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-----
Confidence 34779999999999999999886532 12468999999999999888764 346677777654321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
..+||.|+++||..-... ..+ .....-..+-.+++.+|.+++++|+.|+
T Consensus 112 -----------------~~~FDlIIsNPPY~~~~~--------~d~--~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 112 -----------------DTLFDMAISNPPFGKIKT--------SDF--KGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred -----------------cCCccEEEECCCCCCccc--------ccc--CCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 157999999999765331 111 1111113455678999999888877655
No 103
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.50 E-value=5.6e-07 Score=94.26 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=74.5
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||++||+|..+..|+... |.+.|+++|+++..+..++.. ++.+...|+..++.
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~---------p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-- 86 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRW---------PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-- 86 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC--
Confidence 456788999999999999999888763 357899999999988876541 35666777655321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++... + .|-+ -+.+++.++.++|||||+++.
T Consensus 87 --------------------~~~fD~v~~~~~------l--------~~~~--------d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 87 --------------------KPDTDVVVSNAA------L--------QWVP--------EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred --------------------CCCceEEEEehh------h--------hhCC--------CHHHHHHHHHHhCCCCcEEEE
Confidence 257999998442 1 1111 125678899999999999997
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
+
T Consensus 125 ~ 125 (255)
T PRK14103 125 Q 125 (255)
T ss_pred E
Confidence 6
No 104
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.48 E-value=3.3e-07 Score=94.91 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=76.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
-+|.+|||++||-|..+.-||++ ...|+|+|++++-++.++..+...++. +.........
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-----------Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~ed-------- 117 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-----------GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVED-------- 117 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-----------CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHH--------
Confidence 37999999999999888888776 468999999999999999888777654 1111111111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
......+||.|+| .-++.+-|+. ..+++.+.+++||||.++.||-
T Consensus 118 -------------l~~~~~~FDvV~c------mEVlEHv~dp----------------~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 118 -------------LASAGGQFDVVTC------MEVLEHVPDP----------------ESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -------------HHhcCCCccEEEE------hhHHHccCCH----------------HHHHHHHHHHcCCCcEEEEecc
Confidence 1122268999998 2233333332 3489999999999999999976
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
.
T Consensus 163 n 163 (243)
T COG2227 163 N 163 (243)
T ss_pred c
Confidence 5
No 105
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.48 E-value=1.8e-06 Score=98.32 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=87.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||+|||+|..+..++... ...|+|+|+++..+..++++....+ .++.+...|+...+
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--- 327 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF----------DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--- 327 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC---
Confidence 456789999999999999988887653 2589999999999998887765332 35677777765432
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....||.|++. +++.+.++ ..+++.++.++|||||+|+.
T Consensus 328 ------------------~~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 328 ------------------YPDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred ------------------CCCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEE
Confidence 112579999972 22222211 24688999999999999998
Q ss_pred EcCCCCCCCcHHHHHHHHHHCC
Q 004787 234 STCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~ 255 (730)
++-...+..-.......+...+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g 389 (475)
T PLN02336 368 SDYCRSPGTPSPEFAEYIKQRG 389 (475)
T ss_pred EEeccCCCCCcHHHHHHHHhcC
Confidence 8655443322233344555443
No 106
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.7e-06 Score=92.89 Aligned_cols=127 Identities=23% Similarity=0.253 Sum_probs=91.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+++|.+|||++||+|-.+..++.+ +...|+|+|+|+..+...++|+.++++.... + +..|...
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL----------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---~-~~~~~~~--- 222 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL----------GAKKVVGVDIDPQAVEAARENARLNGVELLV---Q-AKGFLLL--- 222 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc----------CCceEEEecCCHHHHHHHHHHHHHcCCchhh---h-cccccch---
Confidence 468999999999999877766543 2578999999999999999999999887511 1 1111110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.......||.|+++ -|+..-.+++..+..+|||||+++.|=
T Consensus 223 --------------~~~~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 223 --------------EVPENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --------------hhcccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 11122689999982 255556678889999999999999985
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+.-.. +..|.+++.+.+ ++++++
T Consensus 264 --Il~~q-~~~V~~a~~~~g--f~v~~~ 286 (300)
T COG2264 264 --ILEDQ-AESVAEAYEQAG--FEVVEV 286 (300)
T ss_pred --ehHhH-HHHHHHHHHhCC--CeEeEE
Confidence 44444 666677776544 666654
No 107
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.47 E-value=6.5e-07 Score=98.67 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=52.6
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~f 149 (730)
.+|||+|||+|..++.|+.. ...|+|+|++...+..+++|++.++..|+.+...|+..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-----------~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-----------FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 47999999999999988765 258999999999999999999999998999999988764
No 108
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.46 E-value=1.3e-06 Score=92.47 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=79.5
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.|+.+|||+|||.|..+..|+... .+.|+++|+++..+..++.+... ..++.+...|+...|
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~----------~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~-- 112 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY----------GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD-- 112 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc----------CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--
Confidence 4678899999999999999988887542 36899999999999988876543 245777777765432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|++ ++- ..+. ..-..++|+++.++|||||+|
T Consensus 113 -------------------~~~~~FD~V~s~~~l--------------~h~~-------~~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 113 -------------------FPENTFDMIYSRDAI--------------LHLS-------YADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred -------------------CCCCCeEEEEEhhhH--------------HhCC-------HHHHHHHHHHHHHHcCCCcEE
Confidence 11267999997 110 0000 013457899999999999999
Q ss_pred EEEcC
Q 004787 232 VYSTC 236 (730)
Q Consensus 232 VYSTC 236 (730)
+.+..
T Consensus 153 vi~d~ 157 (263)
T PTZ00098 153 LITDY 157 (263)
T ss_pred EEEEe
Confidence 98743
No 109
>PLN02672 methionine S-methyltransferase
Probab=98.45 E-value=2.4e-06 Score=105.04 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=102.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEE
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----------------ANLIVT 142 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~----------------~nv~vt 142 (730)
+.+|||+|||+|..++.++... +.+.|+|+|+++..+..+++|+++++. .++.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~---------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW---------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 5689999999999999998764 347999999999999999999998643 246777
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc------------ccc---
Q 004787 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV------------GLG--- 207 (730)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~------------~~~--- 207 (730)
+.|...... ....+||+|+++||.-..+.+..-+...+.+.| -.+
T Consensus 190 ~sDl~~~~~--------------------~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~ 249 (1082)
T PLN02672 190 ESDLLGYCR--------------------DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVE 249 (1082)
T ss_pred ECchhhhcc--------------------ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCC
Confidence 776543110 001369999999998877754332221122111 111
Q ss_pred -cchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 208 -NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 208 -~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
..-..+.++|+..|.++|+|||.|+. -+.....++|..+++++.+
T Consensus 250 g~dGL~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 250 DQFGLGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFERRG 295 (1082)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHHHCC
Confidence 22335678999999999999998875 5556677787766777655
No 110
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.45 E-value=6.9e-07 Score=96.10 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=93.2
Q ss_pred cccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
...|.++--...+.+.+.++++.++.+|||.|||+|+..+.+.+.+.... .......++|+|+++..+.+++-++.-.
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~--~~~~~~~i~G~ei~~~~~~la~~nl~l~ 100 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKR--NKIKEINIYGIEIDPEAVALAKLNLLLH 100 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCH--HHHCCEEEEEEES-HHHHHHHHHHHHHT
T ss_pred cccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccc--cccccceeEeecCcHHHHHHHHhhhhhh
Confidence 34577766666666777788999999999999999999998888662100 0012578999999999999888777544
Q ss_pred CC--CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHH
Q 004787 135 CT--ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS 212 (730)
Q Consensus 135 g~--~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~ 212 (730)
+. .+..+...|...-+. ......||.||++||-+..+........-.+|... ...-..
T Consensus 101 ~~~~~~~~i~~~d~l~~~~-------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (311)
T PF02384_consen 101 GIDNSNINIIQGDSLENDK-------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY-FPPKSN 160 (311)
T ss_dssp THHCBGCEEEES-TTTSHS-------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTC-SSSTTE
T ss_pred ccccccccccccccccccc-------------------cccccccccccCCCCcccccccccccccccccccc-CCCccc
Confidence 43 233455555433111 01136899999999988764311100000122211 111112
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcC
Q 004787 213 LQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 213 lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.+...+.+++++|++||++++.+-
T Consensus 161 ~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 161 AEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhHHHHHhhcccccceeEEec
Confidence 334478899999999999877654
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.45 E-value=1.1e-06 Score=94.55 Aligned_cols=123 Identities=22% Similarity=0.299 Sum_probs=83.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..+|.+|||++||+|--+..++. |+ .+.|+|+|+|+..+..+++|++.+++.. .+........
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~k-lG---------A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~------ 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAK-LG---------AKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL------ 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHH-TT---------BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHH-cC---------CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc------
Confidence 46789999999999987665543 43 4789999999999999999999999865 2222211111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...+||.|+++- +...-..++....++|+|||+++.|
T Consensus 222 -----------------~~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~l~~~G~lIlS- 258 (295)
T PF06325_consen 222 -----------------VEGKFDLVVANI-------------------------LADVLLELAPDIASLLKPGGYLILS- 258 (295)
T ss_dssp -----------------CCS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEE-
T ss_pred -----------------ccccCCEEEECC-------------------------CHHHHHHHHHHHHHhhCCCCEEEEc-
Confidence 127899999832 3344466777788899999999986
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
-+...+.+.|+ +++++ + ++++..
T Consensus 259 -GIl~~~~~~v~-~a~~~-g--~~~~~~ 281 (295)
T PF06325_consen 259 -GILEEQEDEVI-EAYKQ-G--FELVEE 281 (295)
T ss_dssp -EEEGGGHHHHH-HHHHT-T--EEEEEE
T ss_pred -cccHHHHHHHH-HHHHC-C--CEEEEE
Confidence 45555555555 55554 3 666553
No 112
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.44 E-value=5.7e-07 Score=80.69 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=71.6
Q ss_pred EEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCC
Q 004787 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSA 161 (730)
Q Consensus 82 VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~ 161 (730)
|||+|||+|..+..++..+.. .+...++++|+|+..+..++++.+..+. ++.+...|+..++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~------~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~---------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA------GPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF---------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH----------
T ss_pred CEEeecCCcHHHHHHHHHhhh------cccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc----------
Confidence 799999999999999988621 1247999999999999999999887665 67888888876432
Q ss_pred CccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
....||.|++ ++.. +.. --...+.+++++..++|+|||
T Consensus 64 -----------~~~~~D~v~~----~~~~-~~~--------------~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 -----------SDGKFDLVVC----SGLS-LHH--------------LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -----------HSSSEEEEEE-----TTG-GGG--------------SSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------cCCCeeEEEE----cCCc-cCC--------------CCHHHHHHHHHHHHHHhCCCC
Confidence 1268999997 2211 110 011345789999999999998
No 113
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.44 E-value=1.9e-06 Score=87.10 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=74.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||++||.|..+..|++. ...|+|+|+++..+..++++++..+.. +.+...|...++
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~-----------g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~--- 90 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLA-----------GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAA--- 90 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcc---
Confidence 44455679999999999999998864 368999999999999999888777664 444444443321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
. ...||.|++-... ... . ......++..+.++|||||+++.
T Consensus 91 ------------------~-~~~fD~I~~~~~~------~~~-------~-------~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 91 ------------------L-NEDYDFIFSTVVF------MFL-------Q-------AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ------------------c-cCCCCEEEEeccc------ccC-------C-------HHHHHHHHHHHHHHhCCCcEEEE
Confidence 0 1469999873321 000 0 01234678999999999999655
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
.
T Consensus 132 ~ 132 (195)
T TIGR00477 132 V 132 (195)
T ss_pred E
Confidence 4
No 114
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.44 E-value=1.3e-06 Score=87.45 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=82.9
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp 150 (730)
.+.++++|+.|||-|||+|+..+..+.+..+...........+++.|++.+.+..++.|++..+... +.+.+.|+..++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 4567889999999999999988887665443100000002249999999999999999999999764 677788888765
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||.|++|||. |. .......+..+..+++..+.+.|++ +
T Consensus 102 ~---------------------~~~~~d~IvtnPPy---G~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~ 144 (179)
T PF01170_consen 102 L---------------------PDGSVDAIVTNPPY---GR-----------RLGSKKDLEKLYRQFLRELKRVLKP--R 144 (179)
T ss_dssp G---------------------TTSBSCEEEEE--S---TT-----------SHCHHHHHHHHHHHHHHHHHCHSTT--C
T ss_pred c---------------------ccCCCCEEEECcch---hh-----------hccCHHHHHHHHHHHHHHHHHHCCC--C
Confidence 1 12579999999993 21 1112234567888999999999998 4
Q ss_pred EEEEcCC
Q 004787 231 IVYSTCS 237 (730)
Q Consensus 231 LVYSTCS 237 (730)
+|+-|++
T Consensus 145 ~v~l~~~ 151 (179)
T PF01170_consen 145 AVFLTTS 151 (179)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 4444443
No 115
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.44 E-value=2e-07 Score=92.40 Aligned_cols=120 Identities=28% Similarity=0.267 Sum_probs=67.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
++..+.+|||+||||||+|..+++..+ +.+.|+|+|+.+. ....++....+|........
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~--------~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~- 79 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGG--------PAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIK- 79 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTT--------TEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSH-
T ss_pred CcccccEEEEcCCcccceeeeeeeccc--------ccceEEEEecccc-----------ccccceeeeecccchhhHHH-
Confidence 444569999999999999999987652 2689999999665 11133443344432211100
Q ss_pred CCCCCCCCccccccccccccccccEEEecC--CCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv--PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
. ...-.......||.|+||+ +|+|+... + ......+....|.-|+++|++||.+|
T Consensus 80 -~---------i~~~~~~~~~~~dlv~~D~~~~~~g~~~~----d---------~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 80 -D---------IRKLLPESGEKFDLVLSDMAPNVSGDRNI----D---------EFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp -H---------GGGSHGTTTCSESEEEE-------SSHHS----S---------HHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred -h---------hhhhccccccCcceeccccccCCCCchhh----H---------HHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 0 0000000125899999998 55554211 1 11233566666778889999999988
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
--+-.
T Consensus 137 ~K~~~ 141 (181)
T PF01728_consen 137 IKVFK 141 (181)
T ss_dssp EEESS
T ss_pred EEecc
Confidence 65544
No 116
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=9.2e-07 Score=90.06 Aligned_cols=139 Identities=21% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+++|++|+|+||||||++..++..+.. +|.|+|+|+.+-.. .+++.+...|...-+...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~--------~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~-- 101 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGA--------GGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLE-- 101 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCC--------CCcEEEEECccccc-----------CCCceEEeeeccCccHHH--
Confidence 367999999999999999999988764 57899999955322 256777777766522110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
. . ........+|.|++|+----.|+ |+... .....+-...+.-|...|++||.+|.
T Consensus 102 ~---------l--~~~l~~~~~DvV~sD~ap~~~g~----------~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~-- 157 (205)
T COG0293 102 K---------L--LEALGGAPVDVVLSDMAPNTSGN----------RSVDH-ARSMYLCELALEFALEVLKPGGSFVA-- 157 (205)
T ss_pred H---------H--HHHcCCCCcceEEecCCCCcCCC----------ccccH-HHHHHHHHHHHHHHHHeeCCCCeEEE--
Confidence 0 0 00112244799999975444453 11111 12223334556778889999999985
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEE
Q 004787 236 CSMNPVENEAVVAEILRKCEGSVEL 260 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~~~vel 260 (730)
....-+++..+-..++++=..++.
T Consensus 158 -K~fqg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 158 -KVFQGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred -EEEeCCCHHHHHHHHHHhhceeEE
Confidence 556667777777777765333333
No 117
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=1e-06 Score=88.49 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=63.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~ 156 (730)
.|.+|||+|||+|+-.+.++.. +...++.+|.|.+.+..|++|++.++. .+..+...|+..+....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR----------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~--- 109 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR----------GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL--- 109 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC----------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc---
Confidence 5889999999999987766543 357999999999999999999999994 56788888887542210
Q ss_pred CCCCCCccccccccccccccccEEEecCCC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
.....||.|++|||.
T Consensus 110 ---------------~~~~~FDlVflDPPy 124 (187)
T COG0742 110 ---------------GTREPFDLVFLDPPY 124 (187)
T ss_pred ---------------CCCCcccEEEeCCCC
Confidence 011359999999994
No 118
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.40 E-value=5.5e-07 Score=99.91 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
+-+|||++||+|..++.++....+ ...|++||+++..+..+++|++.++..++.+++.|+..+..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g--------a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~------- 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG--------VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR------- 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC--------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------
Confidence 458999999999999988765321 35899999999999999999999988889999999876421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
.....||+|.+||+ |.. ...|..|++.++.||.| |.|||
T Consensus 110 -------------~~~~~fDvIdlDPf--Gs~------------------------~~fld~al~~~~~~glL-~vTaT 148 (374)
T TIGR00308 110 -------------YRNRKFHVIDIDPF--GTP------------------------APFVDSAIQASAERGLL-LVTAT 148 (374)
T ss_pred -------------HhCCCCCEEEeCCC--CCc------------------------HHHHHHHHHhcccCCEE-EEEec
Confidence 01246999999997 221 13678889999987754 55665
No 119
>PLN03075 nicotianamine synthase; Provisional
Probab=98.40 E-value=2.5e-06 Score=91.72 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=82.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCC-ceEEEecccccCCCcccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTA-NLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR-lg~~-nv~vt~~Da~~fp~~~~~ 155 (730)
+..+|+|++||||..|+.++..-+ .|+|.++++|+|+.+...++..+++ .+.. ++.+..+|+...+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc----
Confidence 678999999999988777655432 2578999999999999999999865 6664 48888888876321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|+|++ +- .|.. ..+.++|.+..+.|+|||.+++-+
T Consensus 192 -----------------~l~~FDlVF~~A-Li-------------~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -----------------SLKEYDVVFLAA-LV-------------GMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -----------------ccCCcCEEEEec-cc-------------cccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 025799999963 11 1111 234679999999999999999865
No 120
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.40 E-value=1.5e-06 Score=87.73 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=64.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~ 156 (730)
.|.+|||+|||+|+.++.++.. ....|+++|.+...+..+++|++.++.. ++.+.+.|+..+... +
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~-~-- 115 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----------GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF-L-- 115 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH-h--
Confidence 4789999999999999888764 1358999999999999999999999875 688888888543110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (730)
......||.|++|||..
T Consensus 116 --------------~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 116 --------------AKKPTFDNVIYLDPPFF 132 (189)
T ss_pred --------------hccCCCceEEEECcCCC
Confidence 00113489999999963
No 121
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.37 E-value=3.2e-07 Score=93.81 Aligned_cols=149 Identities=15% Similarity=0.264 Sum_probs=97.8
Q ss_pred chhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC
Q 004787 40 KNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119 (730)
Q Consensus 40 k~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~ 119 (730)
.++.++.++++-........+..=.....+...+.......+||+++++.|.-|+.+|+.+.. .|+|+++|.
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~--------~g~i~tiE~ 78 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPE--------DGKITTIEI 78 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTT--------TSEEEEEES
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcc--------cceEEEecC
Confidence 445566666654432221121111111122223333445569999999999999999988753 699999999
Q ss_pred CHHHHHHHHHHHHHcCCC-ceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004787 120 DVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (730)
Q Consensus 120 d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd 197 (730)
++++...++.++++.|.. .+.+..+||..+ +.+. .......||.|++|+.
T Consensus 79 ~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~----------------~~~~~~~fD~VFiDa~------------ 130 (205)
T PF01596_consen 79 DPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA----------------NDGEEGQFDFVFIDAD------------ 130 (205)
T ss_dssp SHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH----------------HTTTTTSEEEEEEEST------------
T ss_pred cHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH----------------hccCCCceeEEEEccc------------
Confidence 999999999999999974 688999988763 1110 0011257999999985
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 198 ~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
+ ..+...+..++++|++||.||.--+=
T Consensus 131 --K-----------~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 131 --K-----------RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp --G-----------GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred --c-----------cchhhHHHHHhhhccCCeEEEEcccc
Confidence 0 11244567778999999999975443
No 122
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.36 E-value=3.7e-06 Score=85.79 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=82.6
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~ 151 (730)
.+.+.++.+|||+|||+|..+..++..+.. ...|+++|+++.++..++.++...+. .++.+...|+..++.
T Consensus 46 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~--------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 46 WLGVRPGDKVLDLACGTGDLAIALAKAVGK--------TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HhCCCCCCeEEEeCCCCCHHHHHHHHHcCC--------CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 455668899999999999999999887521 47899999999999999888766443 356777777655331
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
....||.|++.- .+...+ -...+|..+.++|++||++
T Consensus 118 ---------------------~~~~~D~I~~~~------~l~~~~----------------~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 118 ---------------------PDNSFDAVTIAF------GLRNVP----------------DIDKALREMYRVLKPGGRL 154 (239)
T ss_pred ---------------------CCCCccEEEEec------ccccCC----------------CHHHHHHHHHHhccCCcEE
Confidence 125799998621 111000 1245788999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
++++-+.
T Consensus 155 i~~~~~~ 161 (239)
T PRK00216 155 VILEFSK 161 (239)
T ss_pred EEEEecC
Confidence 9875544
No 123
>PRK00811 spermidine synthase; Provisional
Probab=98.33 E-value=5.5e-06 Score=88.67 Aligned_cols=127 Identities=14% Similarity=0.114 Sum_probs=88.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccCCCc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHFPGC 152 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-----~~nv~vt~~Da~~fp~~ 152 (730)
...+||++|+|.|+.+..++... +...|+++|+|+..+.+++..+..++ .+++.+...|+..|-.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~---------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~- 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP---------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA- 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC---------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-
Confidence 35699999999999988876531 23689999999999999999887643 3568889999877531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|++|.+- ..| + ..+-...+.+..+.+.|++||.+|
T Consensus 146 -------------------~~~~~yDvIi~D~~d-p~~-------------~----~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 146 -------------------ETENSFDVIIVDSTD-PVG-------------P----AEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred -------------------hCCCcccEEEECCCC-CCC-------------c----hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 012679999999741 001 1 011234677888899999999998
Q ss_pred EEcCCCCCCCcHHHHHHHHHH
Q 004787 233 YSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~ 253 (730)
..+-| |......+..+++.
T Consensus 189 ~~~~~--~~~~~~~~~~i~~t 207 (283)
T PRK00811 189 AQSGS--PFYQADEIKDMHRK 207 (283)
T ss_pred EeCCC--cccCHHHHHHHHHH
Confidence 75333 33445555655554
No 124
>PHA03411 putative methyltransferase; Provisional
Probab=98.33 E-value=7.5e-06 Score=87.10 Aligned_cols=143 Identities=14% Similarity=0.097 Sum_probs=93.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
++..++.+|||+|||+|..+..++... +...|+++|+++..+..+++++ +++.+.+.|+..+..
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~---------~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-- 123 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRC---------KPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-- 123 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc--
Confidence 455667899999999999888876652 1358999999999888876642 467778888765421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH-HHHHHHHHHhhccCCCEE-
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL-QVQIAMRGISLLKVGGRI- 231 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~l-Q~~IL~rAl~lLKpGGrL- 231 (730)
..+||.|++|||......- ....|..|+- ...+...+ -.+.+..+-.+|+|+|.+
T Consensus 124 --------------------~~kFDlIIsNPPF~~l~~~--d~~~~~~~~G-G~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 124 --------------------NEKFDVVISNPPFGKINTT--DTKDVFEYTG-GEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred --------------------cCCCcEEEEcCCccccCch--hhhhhhhhcc-CccccccccHHHHHhhhHheecCCceEE
Confidence 1579999999997654321 1112222321 11111222 256788888899999965
Q ss_pred -EEEcCC-CCCCCcHHHHHHHHHHCC
Q 004787 232 -VYSTCS-MNPVENEAVVAEILRKCE 255 (730)
Q Consensus 232 -VYSTCS-l~p~ENEaVV~~~L~~~~ 255 (730)
+||.=- ++-.=..+-...+|+.+|
T Consensus 181 ~~yss~~~y~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 181 FAYSGRPYYDGTMKSNKYLKWSKQTG 206 (279)
T ss_pred EEEeccccccccCCHHHHHHHHHhcC
Confidence 366522 234444555678888876
No 125
>PRK04457 spermidine synthase; Provisional
Probab=98.32 E-value=6.1e-06 Score=87.40 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||+|+|.|+.+..++... |...|+++|+|+..+..+++++...+ .+++.+...|+..|-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~---------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---- 131 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL---------PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---- 131 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH----
Confidence 345689999999999988887763 45799999999999999988764333 2578888899876521
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.....||.|++|+- .+.+. |. +-...+++..+.+.|+|||+++...
T Consensus 132 ----------------~~~~~yD~I~~D~~-~~~~~----~~-------------~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 132 ----------------VHRHSTDVILVDGF-DGEGI----ID-------------ALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred ----------------hCCCCCCEEEEeCC-CCCCC----cc-------------ccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 01257999999963 22221 10 0113578899999999999999875
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
++-
T Consensus 178 ~~~ 180 (262)
T PRK04457 178 WSR 180 (262)
T ss_pred CCC
Confidence 554
No 126
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.31 E-value=1.8e-06 Score=85.32 Aligned_cols=84 Identities=23% Similarity=0.215 Sum_probs=58.0
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
..|||+|||-||-|.|+|.. -..|+|+|+|+.|+++++||++-+|+ .++.++++|...+..-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-----------~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~------ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-----------FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR------ 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-----------T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG------
T ss_pred CEEEEeccCcCHHHHHHHHh-----------CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh------
Confidence 36999999999999999886 24799999999999999999999996 5799999998764210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
... ...||.|+++||=-|-.-.
T Consensus 64 -----------~~~-~~~~D~vFlSPPWGGp~Y~ 85 (163)
T PF09445_consen 64 -----------LKS-NKIFDVVFLSPPWGGPSYS 85 (163)
T ss_dssp -----------B-------SEEEE---BSSGGGG
T ss_pred -----------ccc-cccccEEEECCCCCCcccc
Confidence 000 1128999999996654443
No 127
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.31 E-value=3.2e-06 Score=94.23 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=78.0
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
..++++||++|||+|||.|+.+.++++.. ...|+|+|+++..+..++++++.+ ++.+...|...+
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~----------g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l-- 225 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHY----------GVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL-- 225 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc--
Confidence 34678999999999999999999988753 358999999999999998877432 345555544321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
...||+|++- +++.+-+ ......++..+.++|||||++
T Consensus 226 ----------------------~~~fD~Ivs~------~~~ehvg--------------~~~~~~~l~~i~r~LkpGG~l 263 (383)
T PRK11705 226 ----------------------NGQFDRIVSV------GMFEHVG--------------PKNYRTYFEVVRRCLKPDGLF 263 (383)
T ss_pred ----------------------CCCCCEEEEe------CchhhCC--------------hHHHHHHHHHHHHHcCCCcEE
Confidence 1579999861 1211110 011245788899999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
+.++.+.
T Consensus 264 vl~~i~~ 270 (383)
T PRK11705 264 LLHTIGS 270 (383)
T ss_pred EEEEccC
Confidence 9876543
No 128
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=3.7e-06 Score=89.65 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=88.8
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH 148 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~ 148 (730)
....|.++||++|||++||=|+.+..+|+.. ...|+++++|+.-...++..++..|+. ++.+...|-..
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y----------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY----------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc----------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 3456789999999999999999999999874 378999999999999999999999987 78887776554
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
+. ..||+|+. -|++. .... .--...+.++.++|+||
T Consensus 134 ~~------------------------e~fDrIvS------vgmfE-------hvg~-------~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 134 FE------------------------EPFDRIVS------VGMFE-------HVGK-------ENYDDFFKKVYALLKPG 169 (283)
T ss_pred cc------------------------cccceeee------hhhHH-------HhCc-------ccHHHHHHHHHhhcCCC
Confidence 32 44999985 33321 1111 11245788899999999
Q ss_pred CEEEEEcCCC
Q 004787 229 GRIVYSTCSM 238 (730)
Q Consensus 229 GrLVYSTCSl 238 (730)
|+++.-|-+-
T Consensus 170 G~~llh~I~~ 179 (283)
T COG2230 170 GRMLLHSITG 179 (283)
T ss_pred ceEEEEEecC
Confidence 9998765543
No 129
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=2.9e-06 Score=87.49 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=93.3
Q ss_pred ccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEe
Q 004787 65 AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTN 143 (730)
Q Consensus 65 ~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~ 143 (730)
..-.+..+++...+..+||.++.+-|.-|+.||..+.. .|+++++|.+++|...+++|+++.|+.+ +.+..
T Consensus 46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~--------~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD--------DGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC--------CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 33344556667778899999999999999999998753 5899999999999999999999999876 55555
Q ss_pred -cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 144 -HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 144 -~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
+|+...-. ......||.|++|+- ...+...+.+++
T Consensus 118 ~gdal~~l~-------------------~~~~~~fDliFIDad-------------------------K~~yp~~le~~~ 153 (219)
T COG4122 118 GGDALDVLS-------------------RLLDGSFDLVFIDAD-------------------------KADYPEYLERAL 153 (219)
T ss_pred cCcHHHHHH-------------------hccCCCccEEEEeCC-------------------------hhhCHHHHHHHH
Confidence 36554210 012478999999873 123456788999
Q ss_pred hhccCCCEEEEEcCCC
Q 004787 223 SLLKVGGRIVYSTCSM 238 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl 238 (730)
++|+|||.||.=--.+
T Consensus 154 ~lLr~GGliv~DNvl~ 169 (219)
T COG4122 154 PLLRPGGLIVADNVLF 169 (219)
T ss_pred HHhCCCcEEEEeeccc
Confidence 9999999998644433
No 130
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.28 E-value=6.7e-06 Score=87.97 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=74.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
+.+|||++||.|..+..++.. ...|+|+|+++..+..++++++..+. ++.+...|....+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-----------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~-------- 180 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-----------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS-------- 180 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc--------
Confidence 449999999999999888763 36899999999999999999988877 6777666654421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
. ...||.|++-.. +... . ......++.+..++|+|||++++
T Consensus 181 -------------~-~~~fD~I~~~~v------l~~l-------------~-~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 181 -------------I-QEEYDFILSTVV------LMFL-------------N-RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred -------------c-cCCccEEEEcch------hhhC-------------C-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 267999997321 1000 0 12335688999999999999665
No 131
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.25 E-value=1.1e-05 Score=86.99 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=85.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~ 151 (730)
.++..++.+|||+|||+|..+..+++.. |.+.++++|. +..+..+++++.+.+.. ++.+..+|+...+
T Consensus 144 ~~~~~~~~~vlDiG~G~G~~~~~~~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 144 EAKLDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred HcCCCCCCEEEEeCCchhHHHHHHHHHC---------CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 4567888999999999999999888773 4678999997 68888889999888864 5778887765321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
...+|.|++ + + +...|+.. .-.+||+++.+.|+|||+|
T Consensus 213 ----------------------~~~~D~v~~----~--~-------~lh~~~~~-------~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 213 ----------------------YPEADAVLF----C--R-------ILYSANEQ-------LSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred ----------------------CCCCCEEEe----E--h-------hhhcCChH-------HHHHHHHHHHHhcCCCCEE
Confidence 023688875 1 1 11223221 2257899999999999999
Q ss_pred EEEcCCCCCCCc
Q 004787 232 VYSTCSMNPVEN 243 (730)
Q Consensus 232 VYSTCSl~p~EN 243 (730)
+.....+...++
T Consensus 251 ~i~d~~~~~~~~ 262 (306)
T TIGR02716 251 LILDMVIDDPEN 262 (306)
T ss_pred EEEEeccCCCCC
Confidence 887655554443
No 132
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.25 E-value=7.8e-06 Score=82.49 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=78.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||+|||+|..+..++..+.. .+.++++|+++..+..++.+.. ...++.+...|+..++.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~--------~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~---- 102 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD--------RGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF---- 102 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC--------CceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC----
Confidence 447899999999999999988876421 2789999999999998887765 33456777777765431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++.- .+...++ -..++.++.++|+|||+++..+
T Consensus 103 -----------------~~~~~D~i~~~~------~~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 103 -----------------EDNSFDAVTIAF------GLRNVTD----------------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred -----------------CCCcEEEEEEee------eeCCccc----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 125799998621 1111111 1357899999999999999876
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
.+.
T Consensus 144 ~~~ 146 (223)
T TIGR01934 144 FSK 146 (223)
T ss_pred ecC
Confidence 553
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.24 E-value=7.9e-06 Score=80.44 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=65.2
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++.. ..++.+.+.|+..++.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~-----------~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~- 73 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER-----------AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL- 73 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc-----------CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc-
Confidence 456788999999999999999998775 36899999999999999887754 4578899999877542
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
....||.|+.|+|.
T Consensus 74 --------------------~~~~~d~vi~n~Py 87 (169)
T smart00650 74 --------------------PKLQPYKVVGNLPY 87 (169)
T ss_pred --------------------cccCCCEEEECCCc
Confidence 11368999999994
No 134
>PRK06922 hypothetical protein; Provisional
Probab=98.23 E-value=1e-05 Score=94.55 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+++..++.+|||+|||+|..+..+++.. |.+.|+|+|+++..+..++.++...+ .++.+..+|+..+|..
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~ 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSS 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccc
Confidence 4556678999999999999888887763 46899999999999999988776554 3566777777664421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc-hHHHHHHHHHHHHhhccCCCEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG-LHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~-L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|++..+ +. -|..+-+..... -.....++|.++.++|||||++
T Consensus 483 -------------------fedeSFDvVVsn~v------LH----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 483 -------------------FEKESVDTIVYSSI------LH----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred -------------------cCCCCEEEEEEchH------HH----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 12367999997432 00 000000100000 1234567899999999999999
Q ss_pred EEEcCCCC
Q 004787 232 VYSTCSMN 239 (730)
Q Consensus 232 VYSTCSl~ 239 (730)
+.+.-++.
T Consensus 534 II~D~v~~ 541 (677)
T PRK06922 534 IIRDGIMT 541 (677)
T ss_pred EEEeCccC
Confidence 98754443
No 135
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.22 E-value=2e-05 Score=80.50 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=75.9
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~ 158 (730)
.+|||++||.|+.+..+++.. +...|+++|+++..+..++.+++..|.. ++.+...|....|.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~------- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH---------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF------- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------
Confidence 379999999999999888764 2468999999999999999998887754 56777766543210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...||.|++- +++... .-...++..+.++|||||+++.++.
T Consensus 65 ---------------~~~fD~I~~~------~~l~~~----------------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 65 ---------------PDTYDLVFGF------EVIHHI----------------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ---------------CCCCCEeehH------HHHHhC----------------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1469999851 111100 0124688899999999999998754
No 136
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.19 E-value=1.6e-05 Score=84.42 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=86.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecccccC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHF 149 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg----~~nv~vt~~Da~~f 149 (730)
....|. +||++++|.|+.+..++... +...|+++|+|+..+..+++.+..++ .+++.+...|+..|
T Consensus 69 ~~~~p~-~VL~iG~G~G~~~~~ll~~~---------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~ 138 (270)
T TIGR00417 69 THPNPK-HVLVIGGGDGGVLREVLKHK---------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF 138 (270)
T ss_pred cCCCCC-EEEEEcCCchHHHHHHHhCC---------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH
Confidence 334444 99999999999877765532 24689999999999999998876543 24567777777654
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
-. .....||.|++|++- ..+. ...| ...+.+..+.++|+|||
T Consensus 139 l~--------------------~~~~~yDvIi~D~~~-~~~~---------------~~~l--~~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 139 LA--------------------DTENTFDVIIVDSTD-PVGP---------------AETL--FTKEFYELLKKALNEDG 180 (270)
T ss_pred HH--------------------hCCCCccEEEEeCCC-CCCc---------------ccch--hHHHHHHHHHHHhCCCc
Confidence 21 012579999999862 1111 0011 22567788889999999
Q ss_pred EEEEEcCCCCCCCcHHHHHHHHH
Q 004787 230 RIVYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 230 rLVYSTCSl~p~ENEaVV~~~L~ 252 (730)
+++..++|. .-+...+..+++
T Consensus 181 ~lv~~~~~~--~~~~~~~~~~~~ 201 (270)
T TIGR00417 181 IFVAQSESP--WIQLELITDLKR 201 (270)
T ss_pred EEEEcCCCc--ccCHHHHHHHHH
Confidence 999886653 334555554443
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.19 E-value=1.1e-05 Score=82.30 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=78.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
..+.+|||+|||+|..+.+++.. ...++++|.++..+..++.++.+.+..++.+...++..++.-
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---- 108 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-----------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK---- 108 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----
Confidence 34789999999999988887653 246999999999999999888877665567777666554320
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++.-. +... .-...+|.++.++|++||+++.++|
T Consensus 109 ----------------~~~~~D~i~~~~~-------------l~~~---------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 109 ----------------GAKSFDVVTCMEV-------------LEHV---------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ----------------CCCCccEEEehhH-------------HHhC---------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 1257999997221 1110 1124578899999999999999877
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
.
T Consensus 151 ~ 151 (224)
T TIGR01983 151 N 151 (224)
T ss_pred C
Confidence 4
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=98.17 E-value=1.5e-05 Score=87.86 Aligned_cols=137 Identities=19% Similarity=0.222 Sum_probs=87.4
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH--HH---H--cCCCceEEE
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TK---R--MCTANLIVT 142 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n--lk---R--lg~~nv~vt 142 (730)
|++++-+.| .+||++|+|.|+-+..+++. . +...|+++|+|+..+.+++.. +. + +..+++.+.
T Consensus 143 p~m~~h~~P-krVLIIGgGdG~tlrelLk~--~-------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv 212 (374)
T PRK01581 143 PIMSKVIDP-KRVLILGGGDGLALREVLKY--E-------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH 212 (374)
T ss_pred HHHHhCCCC-CEEEEECCCHHHHHHHHHhc--C-------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE
Confidence 444444444 49999999999865555432 1 247899999999999998852 11 1 234678889
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
..|+..|... ....||.|++|.| +.... ... .-...+.+..+.
T Consensus 213 i~Da~~fL~~--------------------~~~~YDVIIvDl~---DP~~~------------~~~--~LyT~EFy~~~~ 255 (374)
T PRK01581 213 VCDAKEFLSS--------------------PSSLYDVIIIDFP---DPATE------------LLS--TLYTSELFARIA 255 (374)
T ss_pred ECcHHHHHHh--------------------cCCCccEEEEcCC---Ccccc------------chh--hhhHHHHHHHHH
Confidence 9998875321 1257999999976 11100 001 112356788889
Q ss_pred hhccCCCEEEEEcCCCCCCCcHHHH---HHHHHHCC
Q 004787 223 SLLKVGGRIVYSTCSMNPVENEAVV---AEILRKCE 255 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl~p~ENEaVV---~~~L~~~~ 255 (730)
+.|+|||++|.-.. +|.....++ ...|++.+
T Consensus 256 ~~LkPgGV~V~Qs~--sp~~~~~~~~~i~~tL~~af 289 (374)
T PRK01581 256 TFLTEDGAFVCQSN--SPADAPLVYWSIGNTIEHAG 289 (374)
T ss_pred HhcCCCcEEEEecC--ChhhhHHHHHHHHHHHHHhC
Confidence 99999999887633 444555553 44445444
No 139
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.17 E-value=1.3e-05 Score=82.41 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=78.2
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+.++.+|||+|||+|..+..++.. ...|+++|.++..+..+..++...+. .+.+...++..++.
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~--- 109 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARL-----------GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA--- 109 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHc-----------CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh---
Confidence 3557889999999999988877653 24699999999999999888877665 45555555544321
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.....||.|++.-. +...++ ...+|.++.++|++||+++.+
T Consensus 110 -----------------~~~~~fD~Ii~~~~------l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 110 -----------------EHPGQFDVVTCMEM------LEHVPD----------------PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -----------------hcCCCccEEEEhhH------hhccCC----------------HHHHHHHHHHHcCCCcEEEEE
Confidence 01257999998321 111111 135788999999999999998
Q ss_pred cCCC
Q 004787 235 TCSM 238 (730)
Q Consensus 235 TCSl 238 (730)
++.-
T Consensus 151 ~~~~ 154 (233)
T PRK05134 151 TLNR 154 (233)
T ss_pred ecCC
Confidence 8753
No 140
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.17 E-value=1.7e-05 Score=81.73 Aligned_cols=136 Identities=26% Similarity=0.387 Sum_probs=94.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.++||.+||-++||+|..-.|+++.++. +|.|+|++.++.-..-|.+.+++- +|++.+..||+. |.-.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~--------~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~-P~~Y 137 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGP--------DGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH-PEKY 137 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTT--------TSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS-GGGG
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCC--------CCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC-hHHh
Confidence 45789999999999999999999999863 799999999999988888777654 689989999986 3211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH-HHHHhhccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL-~rAl~lLKpGGrLV 232 (730)
...-..+|.|++|+. +.-|.+|+ .+|-.+||+||.++
T Consensus 138 -----------------~~lv~~VDvI~~DVa-------------------------Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 138 -----------------RMLVEMVDVIFQDVA-------------------------QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp -----------------TTTS--EEEEEEE-S-------------------------STTHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------hcccccccEEEecCC-------------------------ChHHHHHHHHHHHhhccCCcEEE
Confidence 011258999999986 12355554 45667999999988
Q ss_pred EEc--CCC-CCCCcHHHHHHHHHHCC-CcEEEEe
Q 004787 233 YST--CSM-NPVENEAVVAEILRKCE-GSVELVD 262 (730)
Q Consensus 233 YST--CSl-~p~ENEaVV~~~L~~~~-~~velvd 262 (730)
.+- -|+ .....++|.+..+++.. ..+++++
T Consensus 176 i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 176 ISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 763 334 45577788777776543 2355544
No 141
>PRK03612 spermidine synthase; Provisional
Probab=98.16 E-value=1.3e-05 Score=92.89 Aligned_cols=128 Identities=18% Similarity=0.116 Sum_probs=85.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH--HHHc-----CCCceEEEecccccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ--TKRM-----CTANLIVTNHEAQHF 149 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n--lkRl-----g~~nv~vt~~Da~~f 149 (730)
....+|||+|+|.|..+..+++. . +..+|+++|+|++.++.++++ +..+ .-+++.+...|+..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~--~-------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY--P-------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC--C-------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 34579999999999988777652 1 126999999999999999884 2222 235788888898875
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
.. ....+||.|++|+|-.. + +... +-...++++.+.+.|+|||
T Consensus 367 l~--------------------~~~~~fDvIi~D~~~~~-~-----~~~~-----------~L~t~ef~~~~~~~L~pgG 409 (521)
T PRK03612 367 LR--------------------KLAEKFDVIIVDLPDPS-N-----PALG-----------KLYSVEFYRLLKRRLAPDG 409 (521)
T ss_pred HH--------------------hCCCCCCEEEEeCCCCC-C-----cchh-----------ccchHHHHHHHHHhcCCCe
Confidence 31 11257999999976211 1 1110 1122567888899999999
Q ss_pred EEEEEcCCCCCCCcHHHHHHHHH
Q 004787 230 RIVYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 230 rLVYSTCSl~p~ENEaVV~~~L~ 252 (730)
+++..++|- .........+.+
T Consensus 410 ~lv~~~~~~--~~~~~~~~~i~~ 430 (521)
T PRK03612 410 LLVVQSTSP--YFAPKAFWSIEA 430 (521)
T ss_pred EEEEecCCc--ccchHHHHHHHH
Confidence 999877653 333444344433
No 142
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.15 E-value=9.7e-06 Score=88.97 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=74.3
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..+++.+. .+.|+++|.++..+..++.+.. ..++.+...|+..++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~---------~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~----- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD---------AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF----- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC---------CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC-----
Confidence 4788999999999999888877642 3689999999999888877543 3456677777665431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++. +++.. |. ...++|+++.++|||||+++..
T Consensus 175 ----------------~~~sFDvVIs~------~~L~~-------~~---------d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 175 ----------------PTDYADRYVSA------GSIEY-------WP---------DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred ----------------CCCceeEEEEc------Chhhh-------CC---------CHHHHHHHHHHhcCCCcEEEEE
Confidence 12579999972 22211 11 0135789999999999999875
No 143
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.13 E-value=1.4e-05 Score=81.29 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+.+|||++||+|..+..++... +...|+++|+++..+..+...+. +++.+...|...++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~------ 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF---------PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL------ 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC---------CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC------
Confidence 35789999999999999998764 34679999999998877765433 366677777665431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++.-... |.. . -.++|.++.++|++||.+++++
T Consensus 95 ---------------~~~~fD~vi~~~~l~--------------~~~----~----~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 95 ---------------EDSSFDLIVSNLALQ--------------WCD----D----LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ---------------CCCceeEEEEhhhhh--------------hcc----C----HHHHHHHHHHHcCCCcEEEEEe
Confidence 125799999843211 110 0 1357899999999999999874
No 144
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.11 E-value=1e-05 Score=83.58 Aligned_cols=126 Identities=32% Similarity=0.426 Sum_probs=98.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
-++||.+||=++||+|..-.|+.+.++ |.|.|+|++.+..--..|...+++- +|++.+..||++--..+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVG--------peG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYR- 221 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVG--------PEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYR- 221 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccC--------CCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchhee-
Confidence 478999999999999999999999886 4799999999988777777776543 68888888988722111
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH-HHHHHhhccCCCEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI-AMRGISLLKVGGRIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I-L~rAl~lLKpGGrLVY 233 (730)
..-..+|.|+.|++ .| .|.+| ..+|..+||+||.+|.
T Consensus 222 -----------------mlVgmVDvIFaDva---------qp----------------dq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 222 -----------------MLVGMVDVIFADVA---------QP----------------DQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred -----------------eeeeeEEEEeccCC---------Cc----------------hhhhhhhhhhhhhhccCCeEEE
Confidence 11247999999997 22 23344 4578889999999887
Q ss_pred E---cCCCCCCCcHHHHHHHHHH
Q 004787 234 S---TCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 234 S---TCSl~p~ENEaVV~~~L~~ 253 (730)
| .|+-+...+|+|-+.=.++
T Consensus 260 sikancidstv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 260 SIKANCIDSTVFAEAVFAAEVKK 282 (317)
T ss_pred EEecccccccccHHHHHHHHHHH
Confidence 6 7999999999998876654
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.08 E-value=1.5e-05 Score=81.05 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=92.5
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
.+||+|||-|..++++|.. .|.-.++|+|+...++..+...+.+.+..|+.+++.||..+...
T Consensus 20 l~lEIG~G~G~~l~~~A~~---------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-------- 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR---------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-------- 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH---------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH--------
T ss_pred eEEEecCCCCHHHHHHHHH---------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh--------
Confidence 9999999999999999887 35689999999999999999999999999999999999873221
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p 240 (730)
......+|.|.+.-| |-|.+-.. .-.+| +|...|....+.|++||.|-..|
T Consensus 83 ----------~~~~~~v~~i~i~FP-----------DPWpK~rH-~krRl--~~~~fl~~~~~~L~~gG~l~~~T----- 133 (195)
T PF02390_consen 83 ----------LFPPGSVDRIYINFP-----------DPWPKKRH-HKRRL--VNPEFLELLARVLKPGGELYFAT----- 133 (195)
T ss_dssp ----------HSTTTSEEEEEEES----------------SGGG-GGGST--TSHHHHHHHHHHEEEEEEEEEEE-----
T ss_pred ----------cccCCchheEEEeCC-----------CCCcccch-hhhhc--CCchHHHHHHHHcCCCCEEEEEe-----
Confidence 112367899988665 33433111 11112 45677888899999999998876
Q ss_pred CCcHHHHHHHHH---HCCCcEEEEe
Q 004787 241 VENEAVVAEILR---KCEGSVELVD 262 (730)
Q Consensus 241 ~ENEaVV~~~L~---~~~~~velvd 262 (730)
.++.....+++ .+.+.++.+.
T Consensus 134 -D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 134 -DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred -CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 55555555554 3223455553
No 146
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.05 E-value=5.2e-05 Score=82.01 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=68.2
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+|.++||..++|+..|-||.|..|++.+. .|.|+|+|.|+..+..+++.++.++ .++.+.+.+..++...
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~---------~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLG---------TGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEH 84 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCC---------CCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHH
Confidence 46778999999999999999999998753 4899999999999999988887653 4677777766655421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
- . ......||.||+|-=+|.
T Consensus 85 l-~---------------~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 85 L-D---------------ELLVTKIDGILVDLGVSS 104 (305)
T ss_pred H-H---------------hcCCCcccEEEEeccCCH
Confidence 0 0 011246899999887765
No 147
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.05 E-value=4.6e-06 Score=85.85 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=90.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH--HHcCCCceEEEecccccCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT--KRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl--kRlg~~nv~vt~~Da~~fp~ 151 (730)
..++.|.+|||.|.|-|..++..++. +..+|+.++.|+.=+.++.-|- .++-..++.++.+|+..+-
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V- 198 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER----------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV- 198 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc----------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-
Confidence 35677999999999999988877664 2459999999999887665442 2222346788888887632
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
..+.+..||.|+-|||- ++... +-.-.++-+.-+++||+||+|
T Consensus 199 ------------------~~~~D~sfDaIiHDPPR---------------fS~Ag----eLYseefY~El~RiLkrgGrl 241 (287)
T COG2521 199 ------------------KDFDDESFDAIIHDPPR---------------FSLAG----ELYSEEFYRELYRILKRGGRL 241 (287)
T ss_pred ------------------hcCCccccceEeeCCCc---------------cchhh----hHhHHHHHHHHHHHcCcCCcE
Confidence 12334789999999992 11111 112345566778899999999
Q ss_pred E-EEcCC---CCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 232 V-YSTCS---MNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 232 V-YSTCS---l~p~ENEaVV~~~L~~~~~~velvd 262 (730)
. |.--. ..-..-..=|++-|++.| |+.|+
T Consensus 242 FHYvG~Pg~ryrG~d~~~gVa~RLr~vG--F~~v~ 274 (287)
T COG2521 242 FHYVGNPGKRYRGLDLPKGVAERLRRVG--FEVVK 274 (287)
T ss_pred EEEeCCCCcccccCChhHHHHHHHHhcC--ceeee
Confidence 8 54222 112233455677777765 44443
No 148
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.03 E-value=4.9e-05 Score=77.70 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=50.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
+.++.+|||+|||.|..+..++.. ...|+|+|+++..+..++.++...+. .++.+...|+..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-----------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-----------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 467899999999999998888753 25899999999999999998876665 356676666544
No 149
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.01 E-value=7.7e-05 Score=80.54 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=80.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||++||+|.||..|++.+.. ...|+|+|+|...+..+.+++.+.. -..+..+++|......+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~--------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-- 131 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ--------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-- 131 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc--------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--
Confidence 46789999999999999999988642 3679999999999999988876532 123555677765421100
Q ss_pred CCCCCCCccccccccccccccc---cEEEe--cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 156 KNFSSASDKGIESESNMGQLLF---DRVLC--DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~F---DrVL~--DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
..+ +++++ +.+ -|.+ -..-+.++|++..+.|+|||+
T Consensus 132 -------------------~~~~~~~~~~~~~gs~---~~~~-----------------~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 132 -------------------PEPAAGRRLGFFPGST---IGNF-----------------TPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred -------------------cccccCCeEEEEeccc---ccCC-----------------CHHHHHHHHHHHHHhcCCCCE
Confidence 111 33332 211 1211 012346789999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHH
Q 004787 231 IVYSTCSMNPVENEAVVAEI 250 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~ 250 (730)
++.. ++-..+.+++..+
T Consensus 173 ~lig---~d~~~~~~~~~~a 189 (301)
T TIGR03438 173 LLIG---VDLVKDPAVLEAA 189 (301)
T ss_pred EEEe---ccCCCCHHHHHHh
Confidence 9985 4444666666443
No 150
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.00 E-value=1.2e-05 Score=84.92 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=65.6
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..++++++. ..++.++++|+..++.
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~-----------~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKR-----------AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL- 89 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-
Confidence 456788999999999999999999876 25899999999999999887754 4678999999876431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
..||.|++++|..-
T Consensus 90 ----------------------~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 ----------------------PEFNKVVSNLPYQI 103 (258)
T ss_pred ----------------------hhceEEEEcCCccc
Confidence 34799999999643
No 151
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.00 E-value=1.9e-05 Score=75.26 Aligned_cols=99 Identities=27% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||++||.|..+..++.. .-.|+++|+++..+.. .++...+.+....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~------ 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-----------GFEVTGVDISPQMIEK----------RNVVFDNFDAQDP------ 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-----------TSEEEEEESSHHHHHH----------TTSEEEEEECHTH------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-----------CCEEEEEECCHHHHhh----------hhhhhhhhhhhhh------
Confidence 467889999999999988877543 2389999999998886 2233333322221
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
......||.|+|- .++.+-++ -..+|.+..++|||||+++.++
T Consensus 73 ---------------~~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 73 ---------------PFPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp ---------------HCHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEE
T ss_pred ---------------hccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEE
Confidence 1123689999981 22322222 2467899999999999999987
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
=..
T Consensus 116 ~~~ 118 (161)
T PF13489_consen 116 PNR 118 (161)
T ss_dssp EBT
T ss_pred cCC
Confidence 544
No 152
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.99 E-value=5.3e-05 Score=86.39 Aligned_cols=111 Identities=21% Similarity=0.121 Sum_probs=76.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+++..++.+|||+|||+|..|..+++. .+.|+|+|.++..+...+... ...+++.+...|+....
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~-----------~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~-- 96 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKK-----------AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD-- 96 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhh-----------CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc--
Confidence 445567889999999999999998875 258999999999887654321 12357788888775311
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.......||.|++..++. .+. .....++|.++.++|||||+|+
T Consensus 97 -----------------~~~~~~~fD~I~~~~~l~-------------~l~-------~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 97 -----------------LNISDGSVDLIFSNWLLM-------------YLS-------DKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred -----------------cCCCCCCEEEEehhhhHH-------------hCC-------HHHHHHHHHHHHHhcCCCeEEE
Confidence 001126799999844311 000 0112578899999999999998
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
+.-
T Consensus 140 ~~d 142 (475)
T PLN02336 140 FRE 142 (475)
T ss_pred EEe
Confidence 864
No 153
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.98 E-value=3.3e-05 Score=81.28 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=97.4
Q ss_pred hhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 41 NQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 41 ~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
.+.+..+.++-. +...+.+........+...++......+||+++++.|.-|+.+|..+. +.|+|+++|.+
T Consensus 43 ~~~L~~l~~~a~-~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~--------~~g~v~tiE~~ 113 (247)
T PLN02589 43 PESMKELRELTA-KHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP--------EDGKILAMDIN 113 (247)
T ss_pred CHHHHHHHHHHH-hcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC--------CCCEEEEEeCC
Confidence 345555554421 122233332233333444445555667999999999999999998764 36899999999
Q ss_pred HHHHHHHHHHHHHcCC-CceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004787 121 VQRCNLLIHQTKRMCT-ANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (730)
Q Consensus 121 ~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~ 198 (730)
+.+...++.++++.|. .++.+..+++... +.+. ........||.|++|+-
T Consensus 114 ~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~---------------~~~~~~~~fD~iFiDad------------- 165 (247)
T PLN02589 114 RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI---------------EDGKYHGTFDFIFVDAD------------- 165 (247)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH---------------hccccCCcccEEEecCC-------------
Confidence 9999999999999996 5688888887663 1110 00001257999999873
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 199 ~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.......+..++++|++||.||.=
T Consensus 166 ------------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 166 ------------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ------------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 112245667778999999999863
No 154
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.96 E-value=1.3e-05 Score=86.35 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=71.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+|.++||..|||+++|.|+.|..|++.+. +.|.|+|+|.|+..+..+++.++. ..++.+.+.+...+...
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~--------~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLG--------PKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCC--------CCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 45678999999999999999999998864 258999999999999999887765 45788888887776432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
. ......||.||+|.-+|..
T Consensus 84 l-----------------~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 84 L-----------------AEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred H-----------------HcCCCccCEEEECCCcccc
Confidence 1 0011369999999987764
No 155
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.93 E-value=4.4e-06 Score=74.34 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=58.6
Q ss_pred EeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCC
Q 004787 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSAS 162 (730)
Q Consensus 83 LDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~ 162 (730)
||++||+|..+..|++.+ +.+.++++|+|+..+..+++++...+..+......+......
T Consensus 1 LdiGcG~G~~~~~l~~~~---------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~----------- 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD----------- 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS--------------
T ss_pred CEeCccChHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh-----------
Confidence 799999999999998875 368999999999999888888877765544444333222110
Q ss_pred ccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 163 DKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 163 ~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
......||.|++= +++.+ + .-...+|+++.++|||||+|
T Consensus 61 --------~~~~~~fD~V~~~------~vl~~---------------l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 61 --------YDPPESFDLVVAS------NVLHH---------------L-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------CCC----SEEEEE-------TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred --------cccccccceehhh------hhHhh---------------h-hhHHHHHHHHHHHcCCCCCC
Confidence 0111589999971 22111 1 12247899999999999986
No 156
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.92 E-value=2.7e-05 Score=83.94 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=69.5
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~fp 150 (730)
..+++.++++|||++||+|..|..|++. .+.|+|+|+|+..+..+++++...+ ..++.+.++|+..++
T Consensus 30 ~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-----------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 30 EKAAIKPTDTVLEIGPGTGNLTEKLLQL-----------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HhcCCCCcCEEEEecCchHHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3457789999999999999999998775 3579999999999999999988766 568999999986632
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
...||+|+++.|....
T Consensus 99 -----------------------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -----------------------FPYFDVCVANVPYQIS 114 (294)
T ss_pred -----------------------ccccCEEEecCCcccC
Confidence 1358999999996544
No 157
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.91 E-value=6.2e-05 Score=76.36 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=90.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
|.-..-.++|+++||-|..|.+||.. -..|+|+|+++..+..+++++.. .+++.+...+...+.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-----------Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~--- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-----------CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW--- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-----------EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-----
T ss_pred cCccccceeEecCCCccHHHHHHHHh-----------hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC---
Confidence 33345578999999999999999876 36899999999999999887653 478888888765531
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++ |.-+..-.. ......++.+....|+|||.||.
T Consensus 103 -------------------P~~~FDLIV~----SEVlYYL~~---------------~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SEVLYYLDD---------------AEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp --------------------SS-EEEEEE----ES-GGGSSS---------------HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------------------CCCCeeEEEE----ehHhHcCCC---------------HHHHHHHHHHHHHHhCCCCEEEE
Confidence 1378999997 333321111 11234577888999999999998
Q ss_pred EcCC------CCCCCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004787 234 STCS------MNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (730)
Q Consensus 234 STCS------l~p~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (730)
.+-. +-..-...-|.++|.+.=-.++.+.+....+
T Consensus 145 g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~ 185 (201)
T PF05401_consen 145 GHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSP 185 (201)
T ss_dssp EEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SST
T ss_pred EEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCC
Confidence 5432 1122245666777777655777777765555
No 158
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.89 E-value=1.4e-05 Score=79.85 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=80.2
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
+.+.|++||+|-.+..+|.. .-+|+|++.|++|+..+.+|++-.|..|+.|+++||..+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-----------A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-------- 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-----------AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-------- 94 (252)
T ss_pred hceeeccCCcchHHHHHHhh-----------hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--------
Confidence 78999999999988877765 36899999999999999999988888999999999988532
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...|.|+|..= +..-+..-|...+.+++++||-.+++|
T Consensus 95 ---------------e~ADvvicEml--------------------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ---------------ENADVVICEML--------------------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ---------------cccceeHHHHh--------------------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 45688887321 112234568889999999999988776
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.87 E-value=5.7e-05 Score=78.60 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=95.6
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
-.+|++|+|-|..++++|.. .|.--.+|+|+....+..+...+.+.+++|+.++++||..+....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~---------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~------ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK---------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL------ 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH---------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc------
Confidence 48999999999999999887 367789999999999999999999999999999999998753211
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~ 239 (730)
...+..|+|.+.-| |-|.+ ..-..---+|...|....+.|++||.|-+.|
T Consensus 115 ------------~~~~sl~~I~i~FP-----------DPWpK---kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT---- 164 (227)
T COG0220 115 ------------IPDGSLDKIYINFP-----------DPWPK---KRHHKRRLTQPEFLKLYARKLKPGGVLHFAT---- 164 (227)
T ss_pred ------------CCCCCeeEEEEECC-----------CCCCC---ccccccccCCHHHHHHHHHHccCCCEEEEEe----
Confidence 12247899988665 44433 1111111267888999999999999999987
Q ss_pred CCCcHHHHHH
Q 004787 240 PVENEAVVAE 249 (730)
Q Consensus 240 p~ENEaVV~~ 249 (730)
.|+.....
T Consensus 165 --D~~~y~e~ 172 (227)
T COG0220 165 --DNEEYFEW 172 (227)
T ss_pred --cCHHHHHH
Confidence 56666666
No 160
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=9.9e-05 Score=73.98 Aligned_cols=133 Identities=24% Similarity=0.296 Sum_probs=80.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEec-ccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~-Da~~fp~~~~ 154 (730)
++|+++|||++||||+++.-+.+..+ |.|.|+++|+- | -.......+... |... |....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~--------p~g~v~gVDll--------h---~~p~~Ga~~i~~~dvtd-p~~~~ 126 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVN--------PNGMVLGVDLL--------H---IEPPEGATIIQGNDVTD-PETYR 126 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhC--------CCceEEEEeee--------e---ccCCCCcccccccccCC-HHHHH
Confidence 47899999999999999877766643 68999999971 1 111122222222 2221 10000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.--...+...+|.||.|.---.+|.- ..+-..+..|=...|.-|+.+++|+|.+|
T Consensus 127 ------------ki~e~lp~r~VdvVlSDMapnaTGvr-----------~~Dh~~~i~LC~s~l~~al~~~~p~g~fv-- 181 (232)
T KOG4589|consen 127 ------------KIFEALPNRPVDVVLSDMAPNATGVR-----------IRDHYRSIELCDSALLFALTLLIPNGSFV-- 181 (232)
T ss_pred ------------HHHHhCCCCcccEEEeccCCCCcCcc-----------hhhHHHHHHHHHHHHHHhhhhcCCCcEEE--
Confidence 00011234689999999755555541 11223344555667888999999999998
Q ss_pred cCCCCCCCcHHHHHHHHHHC
Q 004787 235 TCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~ 254 (730)
|-+.--+.++-...-|.+.
T Consensus 182 -cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 182 -CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred -EEEecCCchHHHHHHHHHH
Confidence 5655556666666666543
No 161
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.87 E-value=1.3e-05 Score=86.58 Aligned_cols=195 Identities=22% Similarity=0.268 Sum_probs=103.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+|.++|+..++|+.-|-||.|..|++.+. .|.|+|+|.|+..+..+.++++.. ..++.+.+.+..++...
T Consensus 15 ~L~~~~~g~~vD~T~G~GGHS~aiL~~~~---------~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 15 ALNPKPGGIYVDCTFGGGGHSKAILEKLP---------NGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHT--TT-EEEETT-TTSHHHHHHHHT-T---------T-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHH
T ss_pred hhCcCCCceEEeecCCcHHHHHHHHHhCC---------CCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHH
Confidence 46689999999999999999999998753 499999999999998877655543 35688887776665432
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCC--------------Cc--cccChh-------hhhhcc------
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD--------------GT--LRKAPD-------IWRKWN------ 203 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd--------------Gt--lrk~pd-------~~~~w~------ 203 (730)
.. .. .....+|.||+|--+|.. |- ||-+|+ +...++
T Consensus 85 l~--------------~~-~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~ 149 (310)
T PF01795_consen 85 LK--------------EL-NGINKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELAR 149 (310)
T ss_dssp HH--------------HT-TTTS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHH
T ss_pred HH--------------Hc-cCCCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHH
Confidence 10 00 023579999999877752 22 333332 011110
Q ss_pred -----------------------------------------cc-----cc---------------cchHHHHHHHHHHHH
Q 004787 204 -----------------------------------------VG-----LG---------------NGLHSLQVQIAMRGI 222 (730)
Q Consensus 204 -----------------------------------------~~-----~~---------------~~L~~lQ~~IL~rAl 222 (730)
+. .. ..|..+ ...|..|.
T Consensus 150 I~~~yGee~~a~~IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~L-~~~L~~a~ 228 (310)
T PF01795_consen 150 IFREYGEEKFARRIARAIVEARKKKPITTTKELAEIIEKAVPKKRRRRKIHPATRVFQALRIAVNDELEEL-ERGLEAAP 228 (310)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHSS--BHHHHHHHHHHHS-HHHCC-SS-TTHHHHHHHHHHHCTHHHHH-HHHHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCcccccccCCHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 00 00 011222 45688899
Q ss_pred hhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcc
Q 004787 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRI 300 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~ 300 (730)
.+|+|||+||.- |++..|+- +|..+++...... .++..+|.. .......|+...+.....|.+|+..+.|+
T Consensus 229 ~~L~~gGrl~VI--SFHSLEDR-iVK~~f~~~~~~~---~~p~~lp~~-~~~~~~~~~~i~kk~i~ps~~Ei~~NpRs 299 (310)
T PF01795_consen 229 DLLKPGGRLVVI--SFHSLEDR-IVKQFFRELAKSC---KCPPGLPVC-ECGKHPKFKLITKKPITPSEEEIEENPRS 299 (310)
T ss_dssp HHEEEEEEEEEE--ESSHHHHH-HHHHHHHCCSSC----------------------EESESS-B---HHHHHH-GGG
T ss_pred HHhcCCcEEEEE--EecchhhH-HHHHHHHHhcccC---CCccccccc-ccccccceEEccCCccCCChhhhhcCCch
Confidence 999999999874 77777865 5577777654221 223344422 11223447766666677888888776653
No 162
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.86 E-value=0.00013 Score=75.08 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH------------HcCCCceEEEec
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK------------RMCTANLIVTNH 144 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk------------Rlg~~nv~vt~~ 144 (730)
.++.+|||++||.|--+..||+. .-.|+|+|+++..+..+..... +....++.+...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-----------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-----------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 46789999999999999999874 2479999999999997633211 011124555666
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (730)
|...++.. ....||.|+- - +.+-.-| .....+.+.+..++
T Consensus 102 D~~~~~~~--------------------~~~~fD~i~D-~-----~~~~~l~--------------~~~R~~~~~~l~~l 141 (213)
T TIGR03840 102 DFFALTAA--------------------DLGPVDAVYD-R-----AALIALP--------------EEMRQRYAAHLLAL 141 (213)
T ss_pred cCCCCCcc--------------------cCCCcCEEEe-c-----hhhccCC--------------HHHHHHHHHHHHHH
Confidence 65553310 0145777763 1 1110111 11234578888999
Q ss_pred ccCCCEEEEEcCCC
Q 004787 225 LKVGGRIVYSTCSM 238 (730)
Q Consensus 225 LKpGGrLVYSTCSl 238 (730)
|||||++++.|-+.
T Consensus 142 LkpgG~~ll~~~~~ 155 (213)
T TIGR03840 142 LPPGARQLLITLDY 155 (213)
T ss_pred cCCCCeEEEEEEEc
Confidence 99999988876655
No 163
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.86 E-value=8.1e-05 Score=78.98 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||++||+|..+..++..+... ....|+++|+++..+..+..+ .+++.+...|+..+|.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~------~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~----- 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI------TTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPF----- 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc------cCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCC-----
Confidence 456789999999999999998875421 123799999999988877543 2456677777766542
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++-- .+. .+....++|||||+++..+
T Consensus 148 ----------------~~~sfD~I~~~~------------------~~~-----------~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 148 ----------------ADQSLDAIIRIY------------------APC-----------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred ----------------cCCceeEEEEec------------------CCC-----------CHHHHHhhccCCCEEEEEe
Confidence 126799998510 010 1234567899999999865
No 164
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.85 E-value=0.00015 Score=73.72 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=72.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
-++.++||++||.|.-+..||+. .-.|+|+|.+...+..+.+.+++.+++ +.+...|...+.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~-----------G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~------ 90 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ-----------GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD------ 90 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT-----------T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS------
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc------
Confidence 34569999999999999999886 347999999999999998888887776 666666654431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
. ...||.|++.+ ++..-+ .....+|+...-+.++|||.+++-|
T Consensus 91 ---------------~-~~~yD~I~st~------v~~fL~--------------~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 ---------------F-PEEYDFIVSTV------VFMFLQ--------------RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -----------------TTTEEEEEEES------SGGGS---------------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---------------c-cCCcCEEEEEE------EeccCC--------------HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 1 25799998632 111100 0112346777778899999999854
No 165
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.00037 Score=74.72 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=69.8
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+|.+.|+...+|..-|-||.|-.|++.+.. .|+++|+|.|+..+..++..++.++ .++.+++....++..
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~--------~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~ 87 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPD--------LGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAE 87 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCC--------CCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHH
Confidence 3578999999999999999999999998754 6899999999999999999888776 567777665444322
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
.- ......+||-||+|---|+
T Consensus 88 ~l----------------~~~~i~~vDGiL~DLGVSS 108 (314)
T COG0275 88 AL----------------KELGIGKVDGILLDLGVSS 108 (314)
T ss_pred HH----------------HhcCCCceeEEEEeccCCc
Confidence 10 0011357899998875444
No 166
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.80 E-value=0.00012 Score=84.96 Aligned_cols=159 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+.+|||.|||.|+..+.++..+...... ..-.-.++|+|+|+..+..++.++..++...+.+.+.|........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~---- 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN---- 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc----
Confidence 45699999999999999999887531100 0012578999999999999999988776323344444432211000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccC------------hhhhh---hc-------cc-ccc-cchHHH
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA------------PDIWR---KW-------NV-GLG-NGLHSL 213 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~------------pd~~~---~w-------~~-~~~-~~L~~l 213 (730)
.......||.|+.+||.......++. ++.+. .| .. ... .+...+
T Consensus 106 ------------~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 173 (524)
T TIGR02987 106 ------------IESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTE 173 (524)
T ss_pred ------------cccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccH
Confidence 00112579999999998775432211 11110 01 00 000 122234
Q ss_pred HHHH-HHHHHhhccCCCEEEEEcCC-CCCCCcHHHHHHHHHH
Q 004787 214 QVQI-AMRGISLLKVGGRIVYSTCS-MNPVENEAVVAEILRK 253 (730)
Q Consensus 214 Q~~I-L~rAl~lLKpGGrLVYSTCS-l~p~ENEaVV~~~L~~ 253 (730)
...+ +.+|+++|++||++.+.+-+ +........+.+.|-+
T Consensus 174 y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~ 215 (524)
T TIGR02987 174 YSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFN 215 (524)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 4444 46799999999999987554 2223334445554443
No 167
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.79 E-value=0.00019 Score=76.15 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=71.2
Q ss_pred CCCCEEEeecCCcch----HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH---H-cCC------------
Q 004787 77 QPDHFVLDMCAAPGS----KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK---R-MCT------------ 136 (730)
Q Consensus 77 ~pg~~VLDmCAAPGs----KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk---R-lg~------------ 136 (730)
.++.+|||++||+|- .+..+++.+... ..+...|+|.|+|+..+..+++.+- . .+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~ 173 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKA----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRV 173 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhc----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeC
Confidence 456799999999995 444555544320 0124799999999999998876430 0 011
Q ss_pred -----------CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004787 137 -----------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (730)
Q Consensus 137 -----------~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~ 205 (730)
.++.+..+|....+ .....||.|+| . . +...+
T Consensus 174 ~~~~~v~~~ir~~V~F~~~dl~~~~---------------------~~~~~fD~I~c----r--n-------vl~yf--- 216 (264)
T smart00138 174 EDKYRVKPELKERVRFAKHNLLAES---------------------PPLGDFDLIFC----R--N-------VLIYF--- 216 (264)
T ss_pred CCeEEEChHHhCcCEEeeccCCCCC---------------------CccCCCCEEEe----c--h-------hHHhC---
Confidence 13444445443321 11367999997 1 1 11111
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
-...|.+++.+..+.|+|||.|+..
T Consensus 217 ----~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 217 ----DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ----CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0245678999999999999999976
No 168
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.00016 Score=74.73 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=100.7
Q ss_pred chhhHHHHHHHhhccc-ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004787 40 KNQTLERFHKFLKLEN-EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (730)
Q Consensus 40 k~~~l~~~~~~l~~~~-~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD 118 (730)
..+.++++.++-.... .......-.....+...++..-...++||++.-+|.-++..|..|.. +|+|+|+|
T Consensus 34 e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~--------dGrv~a~e 105 (237)
T KOG1663|consen 34 EPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPE--------DGRVVAIE 105 (237)
T ss_pred CcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCC--------CceEEEEe
Confidence 4456667776633221 11222223334444555566667889999999999998888888764 79999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-eEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccCh
Q 004787 119 LDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 196 (730)
Q Consensus 119 ~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~p 196 (730)
+|..-.+......+..|+.. +.+..++|..- +.+. .+.+...||-+++|+
T Consensus 106 id~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~----------------~~~~~~tfDfaFvDa------------ 157 (237)
T KOG1663|consen 106 IDADAYEIGLELVKLAGVDHKITFIEGPALESLDELL----------------ADGESGTFDFAFVDA------------ 157 (237)
T ss_pred cChHHHHHhHHHHHhccccceeeeeecchhhhHHHHH----------------hcCCCCceeEEEEcc------------
Confidence 99999999988888888754 66666665541 1110 112357899999986
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 197 DIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 197 d~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
|+. .......++++|+|+||.|+|=-
T Consensus 158 --dK~-----------nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 158 --DKD-----------NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred --chH-----------HHHHHHHHHHhhcccccEEEEec
Confidence 221 11257889999999999999853
No 169
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.76 E-value=5.3e-05 Score=79.52 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=68.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc------eEEEecccccCCCc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN------LIVTNHEAQHFPGC 152 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n------v~vt~~Da~~fp~~ 152 (730)
|.+|||++||.|-.|.+||.+ ...|+|+|++.+.+..++...+.....+ +.....++.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-----------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E----- 153 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-----------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE----- 153 (282)
T ss_pred CceEEEeccCccccchhhHhh-----------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh-----
Confidence 688999999999999999887 4689999999999999988733221111 111111111
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...+.||.|+| -++... ..--..++....++|||||+|+
T Consensus 154 -------------------~~~~~fDaVvc-------------sevleH---------V~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 154 -------------------GLTGKFDAVVC-------------SEVLEH---------VKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred -------------------hcccccceeee-------------HHHHHH---------HhCHHHHHHHHHHHhCCCCceE
Confidence 11256999998 111111 1112468889999999999999
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
.||
T Consensus 193 itt 195 (282)
T KOG1270|consen 193 ITT 195 (282)
T ss_pred eee
Confidence 987
No 170
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.74 E-value=0.00012 Score=73.15 Aligned_cols=113 Identities=25% Similarity=0.267 Sum_probs=76.8
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~~~ 158 (730)
++|||++||-|....+|++-= -.+.++++|-+++.+.++.+.+.|-+.+| |.+-..|... |
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg---------f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~-------- 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG---------FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-P-------- 130 (227)
T ss_pred cceeeccCCchHHHHHHHHhc---------CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-C--------
Confidence 399999999999888876641 14679999999999999999999999887 6666665433 1
Q ss_pred CCCCccccccccccccccccEEEe----cC-CCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 159 SSASDKGIESESNMGQLLFDRVLC----DV-PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~----Dv-PCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....+||+||= |+ .-|+++.-.| + .--+...-++|+|||++|.
T Consensus 131 ------------~~~~~qfdlvlDKGT~DAisLs~d~~~~r---------------~----~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 131 ------------DFLSGQFDLVLDKGTLDAISLSPDGPVGR---------------L----VVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred ------------cccccceeEEeecCceeeeecCCCCcccc---------------e----eeehhhHhhccCCCcEEEE
Confidence 122356777752 11 1123332111 0 1124455668999999999
Q ss_pred EcCCCCCC
Q 004787 234 STCSMNPV 241 (730)
Q Consensus 234 STCSl~p~ 241 (730)
++|-+...
T Consensus 180 tSCN~T~d 187 (227)
T KOG1271|consen 180 TSCNFTKD 187 (227)
T ss_pred EecCccHH
Confidence 99998543
No 171
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.70 E-value=0.0007 Score=78.01 Aligned_cols=175 Identities=16% Similarity=0.137 Sum_probs=113.0
Q ss_pred CcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
|.++--..++-+.+.+|.+++..+|+|-|||+||.-++.++.+.... ....+++.|++.....+++-|+--.|..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 88777777777888889999999999999999999999999986421 0378999999999999998888777765
Q ss_pred -ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC---hhhhhhcccccccchHHH
Q 004787 138 -NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA---PDIWRKWNVGLGNGLHSL 213 (730)
Q Consensus 138 -nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~---pd~~~~w~~~~~~~L~~l 213 (730)
++.+..+|...-|... .......||.|+..||-|+.+...-. ...|+....+....-..-
T Consensus 241 ~~~~i~~~dtl~~~~~~----------------~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
T COG0286 241 GDANIRHGDTLSNPKHD----------------DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA 304 (489)
T ss_pred ccccccccccccCCccc----------------ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch
Confidence 2333334332222100 01233689999999999977654321 111211111111111111
Q ss_pred HHHHHHHHHhhccCCCEEE--EEcCCCCCCCcHHHHHHHHHH
Q 004787 214 QVQIAMRGISLLKVGGRIV--YSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLV--YSTCSl~p~ENEaVV~~~L~~ 253 (730)
-..-+.+.+..|+|||+.. ...-.+...-+|..|...|-.
T Consensus 305 ~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 305 DLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 1445677888999976433 223334444478888888866
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.70 E-value=0.00042 Score=75.68 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=62.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC-ceEEEe-cccccCCCccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTN-HEAQHFPGCRA 154 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~-nv~vt~-~Da~~fp~~~~ 154 (730)
++.+|||+|||.|+....|+... +...++|+|+|+..+..++.|+++. +.. .+.+.. .+...+..-
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~---------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-- 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE---------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-- 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC---------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc--
Confidence 56899999999999888776653 2468999999999999999999998 665 355532 232221110
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (730)
.......||.|+|+||.-.++.
T Consensus 183 ---------------i~~~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 183 ---------------IIHKNERFDATLCNPPFHASAA 204 (321)
T ss_pred ---------------ccccCCceEEEEeCCCCcCcch
Confidence 0011357999999999876543
No 173
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.69 E-value=4.1e-05 Score=82.70 Aligned_cols=146 Identities=23% Similarity=0.295 Sum_probs=96.1
Q ss_pred cCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHH-------HHHH
Q 004787 57 IGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN-------LLIH 129 (730)
Q Consensus 57 ~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~-------~L~~ 129 (730)
.|+-+---.-|.+.+-..-++||+.|+|=+.|+||.....|.. ++.|++-|+|...++ -.+.
T Consensus 187 iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F-----------Ga~viGtDIDyr~vragrg~~~si~a 255 (421)
T KOG2671|consen 187 IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF-----------GAYVIGTDIDYRTVRAGRGEDESIKA 255 (421)
T ss_pred cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh-----------cceeeccccchheeecccCCCcchhH
Confidence 3444333345666677778999999999999999986666554 589999999988766 4577
Q ss_pred HHHHcCCCc--eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh-----h---
Q 004787 130 QTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI-----W--- 199 (730)
Q Consensus 130 nlkRlg~~n--v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~-----~--- 199 (730)
|.+..|+.. +-|..+|..+-| + .....||.|+||||.---...||.-.- -
T Consensus 256 NFkQYg~~~~fldvl~~D~sn~~-~-------------------rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~ 315 (421)
T KOG2671|consen 256 NFKQYGSSSQFLDVLTADFSNPP-L-------------------RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEES 315 (421)
T ss_pred hHHHhCCcchhhheeeecccCcc-h-------------------hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccc
Confidence 888888542 445556655522 1 124789999999996321111221000 0
Q ss_pred ---hhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 200 ---RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 200 ---~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
..........+..+-..+|.-+.+.|.-|||+|+
T Consensus 316 ~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 316 SRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred cccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 0011122334556677888999999999999995
No 174
>PLN02366 spermidine synthase
Probab=97.68 E-value=0.00058 Score=74.26 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=78.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCcc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~fp~~~ 153 (730)
...+||++++|.|+.+..++.. . +...|+.+|+|+.-+..++..+... .-+++.+...|+..|-.-
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~--~-------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~- 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH--S-------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN- 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC--C-------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-
Confidence 4579999999999987777543 1 1368999999999999988877543 235789999998775310
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....||.|++|.+- ..| + .-+-...+.++.+.+.|+|||.+|.
T Consensus 161 ------------------~~~~~yDvIi~D~~d-p~~-------------~----~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 161 ------------------APEGTYDAIIVDSSD-PVG-------------P----AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred ------------------ccCCCCCEEEEcCCC-CCC-------------c----hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 012579999999751 111 0 1111345678889999999999875
No 175
>PRK10742 putative methyltransferase; Provisional
Probab=97.68 E-value=0.00011 Score=77.08 Aligned_cols=88 Identities=16% Similarity=0.001 Sum_probs=70.1
Q ss_pred chhhccCCCCCC--EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc------CC---C
Q 004787 69 VPPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------CT---A 137 (730)
Q Consensus 69 lp~llLd~~pg~--~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl------g~---~ 137 (730)
..+.++.+++|. +|||++||.|.-++.++.. .+.|+++|.++.-+.+|.++++++ +. .
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-----------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ 145 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE 145 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhc
Confidence 445677888998 9999999999999998875 356999999999999999999996 32 4
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCC
Q 004787 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (730)
Q Consensus 138 nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (730)
++.+.+.|+..|..- ....||.|.+|||.-
T Consensus 146 ri~l~~~da~~~L~~--------------------~~~~fDVVYlDPMfp 175 (250)
T PRK10742 146 RLQLIHASSLTALTD--------------------ITPRPQVVYLDPMFP 175 (250)
T ss_pred eEEEEeCcHHHHHhh--------------------CCCCCcEEEECCCCC
Confidence 577888887765320 113699999999943
No 176
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.64 E-value=0.0004 Score=70.95 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 145 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~D 145 (730)
..++.+|||+|||+|..+..++.. ...|+++|+++..+..++.+....+. .++.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-----------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 356889999999999998888754 24699999999999999998877765 456666655
No 177
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.64 E-value=0.00037 Score=75.92 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=40.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
++.+|||+|||+|..+..++.. ...|+|+|+++..+..++++++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-----------g~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-----------GAIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhc
Confidence 5789999999999999888764 258999999999999999988765
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.63 E-value=0.00014 Score=77.52 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=63.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..++.++. .+++.+.++|+..++.-
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt~~L~~~-----------~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALTEPLLER-----------AAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLS 102 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHHHHHHHh-----------CCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHH
Confidence 457789999999999999999999876 2489999999999999887653 26789999998875410
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
...+|.|++++|.
T Consensus 103 ---------------------~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ---------------------ELQPLKVVANLPY 115 (272)
T ss_pred ---------------------HcCcceEEEeCCc
Confidence 0116899999995
No 179
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=0.00013 Score=75.09 Aligned_cols=130 Identities=25% Similarity=0.348 Sum_probs=76.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
-.+|.|+||||||++..|++.|.............|||+|+.+ -...+.++...+|.+.-..+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~GV~qlq~DIT~~stae----- 105 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEGVIQLQGDITSASTAE----- 105 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCceEEeecccCCHhHHH-----
Confidence 3589999999999999999998763221111122599999722 113456777777765521110
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH----HHHHHHHHHHH----hhccCCCE
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH----SLQVQIAMRGI----SLLKVGGR 230 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~----~lQ~~IL~rAl----~lLKpGGr 230 (730)
.. -..+...+-|.|+||.. ||+ .++| -.|.+||..|+ ..||+||.
T Consensus 106 -------~I-i~hfggekAdlVvcDGA----------PDv---------TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~ 158 (294)
T KOG1099|consen 106 -------AI-IEHFGGEKADLVVCDGA----------PDV---------TGLHDLDEYVQAQLLLAALNIATCVLKPGGS 158 (294)
T ss_pred -------HH-HHHhCCCCccEEEeCCC----------CCc---------cccccHHHHHHHHHHHHHHHHHhheecCCCe
Confidence 00 01123367899999853 222 2233 25777777665 46899999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
+|- -+..-++-..+..-|+..
T Consensus 159 FVa---KifRg~~tslLysql~~f 179 (294)
T KOG1099|consen 159 FVA---KIFRGRDTSLLYSQLRKF 179 (294)
T ss_pred eeh---hhhccCchHHHHHHHHHH
Confidence 884 344445545555445443
No 180
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00012 Score=83.05 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=82.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~-fp~ 151 (730)
.+++.++..+||+|||+|-..+.+|.- .++|+++++++..+.-+..|++.+|..|..+..+.|.. |+.
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~-----------~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARG-----------VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS 446 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcc-----------ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccch
Confidence 356778899999999999988877653 68999999999999999999999999999999885554 443
Q ss_pred cccCCCCCCCCcccccccccccccccc-EEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFD-RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FD-rVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
+. ...+ ..=+ .+++|||-.| +|.. +-.+++-.+.--+
T Consensus 447 l~-~~~~----------------~~~~~v~iiDPpR~G---------------------lh~~----~ik~l~~~~~~~r 484 (534)
T KOG2187|consen 447 LL-TPCC----------------DSETLVAIIDPPRKG---------------------LHMK----VIKALRAYKNPRR 484 (534)
T ss_pred hc-ccCC----------------CCCceEEEECCCccc---------------------ccHH----HHHHHHhccCccc
Confidence 31 1110 1224 6788999433 3332 2223333443378
Q ss_pred EEEEcCCCC
Q 004787 231 IVYSTCSMN 239 (730)
Q Consensus 231 LVYSTCSl~ 239 (730)
+||-+|..+
T Consensus 485 lvyvSCn~~ 493 (534)
T KOG2187|consen 485 LVYVSCNPH 493 (534)
T ss_pred eEEEEcCHH
Confidence 999999984
No 181
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00019 Score=73.48 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=76.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.+-.+|.|++||||.-|.+|++.. |...|+++|.|+.++..++. | .+++.+...|...+-.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw---------P~A~i~GiDsS~~Mla~Aa~---r--lp~~~f~~aDl~~w~p---- 89 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW---------PDAVITGIDSSPAMLAKAAQ---R--LPDATFEEADLRTWKP---- 89 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC---------CCCeEeeccCCHHHHHHHHH---h--CCCCceecccHhhcCC----
Confidence 4567799999999999999999885 56899999999999987744 2 3677777787776521
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...+|.|+.++- -.|-+.. .++|.|-+..|.|||.|..
T Consensus 90 ------------------~~~~dllfaNAv--------------lqWlpdH--------~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 90 ------------------EQPTDLLFANAV--------------LQWLPDH--------PELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred ------------------CCccchhhhhhh--------------hhhcccc--------HHHHHHHHHhhCCCceEEE
Confidence 256888887552 2454444 4678888999999999875
No 182
>PLN02823 spermine synthase
Probab=97.58 E-value=0.00061 Score=74.89 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=86.4
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHE 145 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~D 145 (730)
|+++..+.| .+||-++.|-|+-+..++..- +...|+++|+|+.-+.++++.+... .-+++.+...|
T Consensus 96 ~~l~~~~~p-k~VLiiGgG~G~~~re~l~~~---------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 96 PALLHHPNP-KTVFIMGGGEGSTAREVLRHK---------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred HHHhhCCCC-CEEEEECCCchHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 344444433 589999999998777665431 2468999999999999998876432 23678899999
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCC-CCCccccChhhhhhcccccccchHHHHHHHHH-HHHh
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS-GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAM-RGIS 223 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS-GdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~-rAl~ 223 (730)
+..|-. ....+||.|++|++=. ..|. ..+-...+.+. .+.+
T Consensus 166 a~~~L~--------------------~~~~~yDvIi~D~~dp~~~~~-----------------~~~Lyt~eF~~~~~~~ 208 (336)
T PLN02823 166 ARAELE--------------------KRDEKFDVIIGDLADPVEGGP-----------------CYQLYTKSFYERIVKP 208 (336)
T ss_pred hHHHHh--------------------hCCCCccEEEecCCCccccCc-----------------chhhccHHHHHHHHHH
Confidence 987632 1125799999997410 0010 01112235555 6678
Q ss_pred hccCCCEEEEEcCCCCCCCcHHHHHHHHH
Q 004787 224 LLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 224 lLKpGGrLVYSTCSl~p~ENEaVV~~~L~ 252 (730)
.|+|||.+|.-.-|.....+...+..+++
T Consensus 209 ~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~ 237 (336)
T PLN02823 209 KLNPGGIFVTQAGPAGILTHKEVFSSIYN 237 (336)
T ss_pred hcCCCcEEEEeccCcchhccHHHHHHHHH
Confidence 99999998865444333334444444443
No 183
>PRK05785 hypothetical protein; Provisional
Probab=97.57 E-value=0.00042 Score=71.85 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=63.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..+++.. .+.|+|+|.++.++..++... .....|+..+|.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~----------~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~------ 106 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF----------KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPF------ 106 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc----------CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCC------
Confidence 47899999999999988887753 268999999999998776421 124556655442
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
....||.|++ +. +++.-++ ..+.|++..+.|||++
T Consensus 107 ---------------~d~sfD~v~~-----~~-~l~~~~d----------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 ---------------RDKSFDVVMS-----SF-ALHASDN----------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---------------CCCCEEEEEe-----cC-hhhccCC----------------HHHHHHHHHHHhcCce
Confidence 2368999997 11 2222111 1457888889999853
No 184
>PRK06202 hypothetical protein; Provisional
Probab=97.56 E-value=0.00042 Score=71.56 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=70.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+...++.+|||+|||+|..+..|++.+... .+...|+|+|+++..+..++.+.... ++.+...++..++.
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~-----g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~-- 125 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRD-----GLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA-- 125 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhC-----CCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc--
Confidence 344677899999999999999988765421 12458999999999998887654332 34444444443321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++. .++.+-++. .-.++|+.+.++++ |.++.
T Consensus 126 -------------------~~~~fD~V~~~------~~lhh~~d~--------------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 126 -------------------EGERFDVVTSN------HFLHHLDDA--------------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred -------------------cCCCccEEEEC------CeeecCChH--------------HHHHHHHHHHHhcC--eeEEE
Confidence 12679999982 222222111 11467888888887 55554
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
.
T Consensus 165 ~ 165 (232)
T PRK06202 165 N 165 (232)
T ss_pred e
Confidence 3
No 185
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.53 E-value=0.0015 Score=70.35 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-cccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN-HEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~-~Da~~fp~~~~~~ 156 (730)
.|.+|||++|+.|..+..++.. +...|+|+|.+..-+....---+-+|........ .-...+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~----------GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------ 178 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR----------GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------ 178 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc----------CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence 6889999999999998887654 2468999999877554422211223333211111 1111111
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
. ...||.|+| .|++-+..+- ...|......|++||.||.=|-
T Consensus 179 ---------------~-~~~FDtVF~------MGVLYHrr~P----------------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 179 ---------------N-LGAFDTVFS------MGVLYHRRSP----------------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred ---------------c-cCCcCEEEE------eeehhccCCH----------------HHHHHHHHHhhCCCCEEEEEEe
Confidence 1 367999998 7877543321 2345666778999999997765
Q ss_pred CCCC
Q 004787 237 SMNP 240 (730)
Q Consensus 237 Sl~p 240 (730)
-+--
T Consensus 221 vi~g 224 (315)
T PF08003_consen 221 VIDG 224 (315)
T ss_pred eecC
Confidence 5433
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.00058 Score=68.95 Aligned_cols=98 Identities=23% Similarity=0.229 Sum_probs=74.3
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
+|+|+++|.|-=..-+|-+. |...|+-+|...+|+..|++-+..+|.+|+.+.+..+.. +.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~---------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~--------- 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR---------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE--------- 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH----------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT---------
T ss_pred eEEecCCCCCChhHHHHHhC---------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc---------
Confidence 89999999987777776553 467899999999999999999999999999999887766 11
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++=+= ..+ ..++.-+..+|++||+++.--
T Consensus 112 ------------~~~~fd~v~aRAv----------------------~~l----~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 112 ------------YRESFDVVTARAV----------------------APL----DKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ------------TTT-EEEEEEESS----------------------SSH----HHHHHHHGGGEEEEEEEEEEE
T ss_pred ------------cCCCccEEEeehh----------------------cCH----HHHHHHHHHhcCCCCEEEEEc
Confidence 1368999997221 111 346788889999999888653
No 187
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.50 E-value=0.0009 Score=69.21 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=35.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
+.++.+|||.+||.|--+..||+. .-.|+|+|+++..+..+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-----------G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-----------GHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-----------CCeEEEEccCHHHHHHHH
Confidence 356789999999999999999874 347999999999998764
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.47 E-value=0.00051 Score=79.46 Aligned_cols=117 Identities=12% Similarity=0.160 Sum_probs=88.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+..+||+|||-|..++++|.. .|.-.++|+|+...++..+...+.+.+..|+.+...|+..+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~---------~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~----- 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM---------NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND----- 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh---------CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-----
Confidence 4779999999999999999887 35678999999999999999999999999999988876543221
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.....+|+|.+.-| |-|.+ ..-..-.-+|...|....++||+||.|-+.|=
T Consensus 413 --------------~~~~sv~~i~i~FP-----------DPWpK---krh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 413 --------------LPNNSLDGIYILFP-----------DPWIK---NKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred --------------cCcccccEEEEECC-----------CCCCC---CCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 22356899988665 44433 11111112566778888999999999988763
No 189
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00044 Score=71.97 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=41.3
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR 133 (730)
.+..+||++|-.|-.|++||...+. ..|+++|+|+.+++.++.++.-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~---------r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP---------RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc---------ceeeEeeccHHHHHHHHHhccc
Confidence 4678999999999999999998763 5799999999999999888753
No 190
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.46 E-value=0.00053 Score=70.09 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=45.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+.++.+|||+|||+|..+..|++.+. .+.|+|+|+++..+..+++++ +++.+...|+..
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~---------~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP---------FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 445788999999999999998877642 478999999999999887653 334555555543
No 191
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0019 Score=65.73 Aligned_cols=140 Identities=23% Similarity=0.309 Sum_probs=98.0
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
-+++|++||=++||+|....|++...+ .|.|+|++.++.-..-|...+++ -+|+.....||.. |.-.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~---------~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~-P~~Y- 139 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG---------EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK-PEKY- 139 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC---------CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC-cHHh-
Confidence 468999999999999999999999864 59999999999988888777654 3678888888875 3210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH-HHHHhhccCCCEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL-~rAl~lLKpGGrLVY 233 (730)
..--..+|.|.+|+. .+-|.+|+ .+|-.+||.||.++.
T Consensus 140 ----------------~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 140 ----------------RHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred ----------------hhhcccccEEEEecC-------------------------CchHHHHHHHHHHHhcccCCeEEE
Confidence 011256999999985 12355554 567889999996554
Q ss_pred E--cCCCCCCCc-HHHHHHHHHHC-CCcEEEEecCccCC
Q 004787 234 S--TCSMNPVEN-EAVVAEILRKC-EGSVELVDVSNEVP 268 (730)
Q Consensus 234 S--TCSl~p~EN-EaVV~~~L~~~-~~~velvd~s~~lP 268 (730)
+ +-|+..-+. +.|-..-+++. .+.|++++.-+.-|
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LeP 217 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEP 217 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence 4 666665544 45555444432 24577766543333
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.39 E-value=0.00047 Score=75.65 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=67.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----------CceEEEecccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----------ANLIVTNHEAQ 147 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~----------~nv~vt~~Da~ 147 (730)
++.+|||||||=||=..=.... ..+.++++|++..-+..++++.+.+.. -...+...|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~----------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA----------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCchhHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 8999999999999854443221 257999999999999998888743321 11233344433
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.-. +... .......||.|=|=- ...-.-.-...-+.+|.++..+|+|
T Consensus 132 ~~~---l~~~------------~~~~~~~FDvVScQF------------------alHY~Fese~~ar~~l~Nvs~~Lk~ 178 (331)
T PF03291_consen 132 SES---LREK------------LPPRSRKFDVVSCQF------------------ALHYAFESEEKARQFLKNVSSLLKP 178 (331)
T ss_dssp CSH---HHCT------------SSSTTS-EEEEEEES-------------------GGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred cch---hhhh------------ccccCCCcceeehHH------------------HHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 200 0000 011135899997711 0000111112235589999999999
Q ss_pred CCEEEEEcCCC
Q 004787 228 GGRIVYSTCSM 238 (730)
Q Consensus 228 GGrLVYSTCSl 238 (730)
||+++-+|.+-
T Consensus 179 GG~FIgT~~d~ 189 (331)
T PF03291_consen 179 GGYFIGTTPDS 189 (331)
T ss_dssp EEEEEEEEE-H
T ss_pred CCEEEEEecCH
Confidence 99999987653
No 193
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.39 E-value=0.00054 Score=72.03 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=53.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
.+++.++++|||+|||+|..|..|++.. ..|+|+|+|+..+..++.++.. ..++.+.+.|+..++
T Consensus 24 ~~~~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 24 AANVLEGDVVLEIGPGLGALTEPLLKRA-----------KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD 88 (253)
T ss_pred hcCCCCcCEEEEeCCCCCHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC
Confidence 3567789999999999999999998762 3599999999999988876543 467888999987754
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00053 Score=70.05 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=76.0
Q ss_pred ccC--CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----------CCceE
Q 004787 73 FLD--VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----------TANLI 140 (730)
Q Consensus 73 lLd--~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg----------~~nv~ 140 (730)
+|+ ++||...||+++|+|.-|+.++.+++.. .+.++++|.-+.-+...+.|+...- ...+.
T Consensus 75 ~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~-------g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 75 YLDDHLQPGASFLDVGSGSGYLTACFARMVGAT-------GGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHhhccCcceeecCCCccHHHHHHHHHhcCC-------CccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 455 7999999999999999999999898752 3345999999999999998886432 23455
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
++.+|.... ..+...||+|.|-+- . .++..+
T Consensus 148 ivvGDgr~g---------------------~~e~a~YDaIhvGAa-----a-----------------------~~~pq~ 178 (237)
T KOG1661|consen 148 IVVGDGRKG---------------------YAEQAPYDAIHVGAA-----A-----------------------SELPQE 178 (237)
T ss_pred EEeCCcccc---------------------CCccCCcceEEEccC-----c-----------------------cccHHH
Confidence 556666541 122368999998432 1 123455
Q ss_pred HHhhccCCCEEEE
Q 004787 221 GISLLKVGGRIVY 233 (730)
Q Consensus 221 Al~lLKpGGrLVY 233 (730)
-+..|++||+|+.
T Consensus 179 l~dqL~~gGrlli 191 (237)
T KOG1661|consen 179 LLDQLKPGGRLLI 191 (237)
T ss_pred HHHhhccCCeEEE
Confidence 6778999999985
No 195
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.32 E-value=0.0017 Score=64.29 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=103.3
Q ss_pred hhHHHHHHHhhcccccCcEEEccccccchhh----ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 004787 42 QTLERFHKFLKLENEIGNITRQEAVSMVPPL----FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN 117 (730)
Q Consensus 42 ~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~l----lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAn 117 (730)
.++.-|..|+.....+|.|.. +|-+.+. ..++..|--||.++.|+|-.|-.|++.... ...++|+
T Consensus 11 ~e~~F~k~wi~~PrtVGaI~P---sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~--------~~~L~~i 79 (194)
T COG3963 11 EEISFFKGWIDNPRTVGAILP---SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVR--------PESLTAI 79 (194)
T ss_pred HHHHHHHHHhcCCceeeeecC---CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCC--------ccceEEE
Confidence 467778899999999998863 3333322 347788999999999999999999887543 4579999
Q ss_pred eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004787 118 DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (730)
Q Consensus 118 D~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd 197 (730)
|.+..-...|.+. . +.+.++++||...... + .......||.|++-+| +..-|-
T Consensus 80 E~~~dF~~~L~~~---~--p~~~ii~gda~~l~~~-l---------------~e~~gq~~D~viS~lP------ll~~P~ 132 (194)
T COG3963 80 EYSPDFVCHLNQL---Y--PGVNIINGDAFDLRTT-L---------------GEHKGQFFDSVISGLP------LLNFPM 132 (194)
T ss_pred EeCHHHHHHHHHh---C--CCccccccchhhHHHH-H---------------hhcCCCeeeeEEeccc------cccCcH
Confidence 9999998877542 2 3455788888764311 1 1123468999999777 211111
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 198 ~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
..-.+||..++..|.+||.+|--|-+
T Consensus 133 --------------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 133 --------------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred --------------HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22367999999999999999866655
No 196
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.29 E-value=0.00015 Score=83.21 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=74.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+++++.|||+|||||++...+++.|.- ++.||++|+-+-+ ..+++.....|... ..++.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv--------~slivGvDl~pik-----------p~~~c~t~v~dItt-d~cr~- 100 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPV--------GSLIVGVDLVPIK-----------PIPNCDTLVEDITT-DECRS- 100 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCC--------CceEEEeeeeecc-----------cCCccchhhhhhhH-HHHHH-
Confidence 478999999999999998777777653 6899999984422 12333222222211 00000
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.-......-+.|.||.|..-+-.| .|. .++.....|-.+-|+-|..+|+.||.+|--
T Consensus 101 -----------~l~k~l~t~~advVLhDgapnVg~----------~w~-~DA~~q~~L~l~al~LA~~~l~~~g~fvtk- 157 (780)
T KOG1098|consen 101 -----------KLRKILKTWKADVVLHDGAPNVGG----------NWV-QDAFQQACLTLRALKLATEFLAKGGTFVTK- 157 (780)
T ss_pred -----------HHHHHHHhCCCcEEeecCCCccch----------hHH-HHHHHhhHHHHHHHHHHHHHHHhcCccccc-
Confidence 000011224569999986322222 232 122333445566778888999999997643
Q ss_pred CCCCCCCcHHHHHHHHH
Q 004787 236 CSMNPVENEAVVAEILR 252 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~ 252 (730)
+.+.+.-.-+..++.
T Consensus 158 --vfrs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 158 --VFRSEDYNGLLRVFG 172 (780)
T ss_pred --cccCCcchHHHHHHH
Confidence 444455444444443
No 197
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.21 E-value=0.00086 Score=70.59 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=89.1
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHE 145 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg----~~nv~vt~~D 145 (730)
+++++.+ ...+||=++.|-|+.+.+++.. .+-..|+++|+|+.-++++++-+.... -+++.+...|
T Consensus 69 ~~~~~~~-~p~~VLiiGgG~G~~~~ell~~---------~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 69 PPLLLHP-NPKRVLIIGGGDGGTARELLKH---------PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHSS-ST-EEEEEESTTSHHHHHHTTS---------TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred hHhhcCC-CcCceEEEcCCChhhhhhhhhc---------CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 4445554 4669999999999987776543 123689999999999999988765532 3689999999
Q ss_pred cccCCCcccCCCCCCCCccccccccccccc-cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQL-LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~-~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (730)
|..|-.- ... +||.|++|.+= ..|.. . . -.-.+.++.+.+.
T Consensus 139 g~~~l~~--------------------~~~~~yDvIi~D~~d-p~~~~-------------~--~--l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 139 GRKFLKE--------------------TQEEKYDVIIVDLTD-PDGPA-------------P--N--LFTREFYQLCKRR 180 (246)
T ss_dssp HHHHHHT--------------------SSST-EEEEEEESSS-TTSCG-------------G--G--GSSHHHHHHHHHH
T ss_pred hHHHHHh--------------------ccCCcccEEEEeCCC-CCCCc-------------c--c--ccCHHHHHHHHhh
Confidence 9876421 113 89999999862 22211 0 0 1224567788889
Q ss_pred ccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 225 LKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 225 LKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
|++||.++.-. -++..++..+..+++.
T Consensus 181 L~~~Gv~v~~~--~~~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 181 LKPDGVLVLQA--GSPFLHPELFKSILKT 207 (246)
T ss_dssp EEEEEEEEEEE--EETTTTHHHHHHHHHH
T ss_pred cCCCcEEEEEc--cCcccchHHHHHHHHH
Confidence 99999999765 3344566666666554
No 198
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.21 E-value=0.00087 Score=73.40 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.+|++|||+||+|||+|-+|++. ...|+|+|..+ +...+ +..+++.....|+..+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-----------G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p---- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-----------GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRP---- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-----------CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCC----
Confidence 468999999999999999999875 35999999543 11111 234566666666554321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
....+|.|+||+-|...
T Consensus 267 -----------------~~~~vDwvVcDmve~P~ 283 (357)
T PRK11760 267 -----------------PRKNVDWLVCDMVEKPA 283 (357)
T ss_pred -----------------CCCCCCEEEEecccCHH
Confidence 03679999999976443
No 199
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0016 Score=67.31 Aligned_cols=160 Identities=23% Similarity=0.207 Sum_probs=103.2
Q ss_pred HHHHHHHhhcccccCcEEE-ccccccchhhccCC-------CC-CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEE
Q 004787 44 LERFHKFLKLENEIGNITR-QEAVSMVPPLFLDV-------QP-DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMV 114 (730)
Q Consensus 44 l~~~~~~l~~~~~~G~i~~-Qd~~Smlp~llLd~-------~p-g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~V 114 (730)
+..+.+-|...++.=+++. -+...|+.-+++|. .. +.+|+|+++|+|-=..-|| .+ .|...|
T Consensus 24 l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLA-I~--------~p~~~v 94 (215)
T COG0357 24 LEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLA-IA--------FPDLKV 94 (215)
T ss_pred HHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHH-Hh--------ccCCcE
Confidence 4444444444455545544 34556666555541 22 6899999999998777776 32 246779
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc-ccEEEecCCCCCCCccc
Q 004787 115 IANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL-FDRVLCDVPCSGDGTLR 193 (730)
Q Consensus 115 vAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~-FDrVL~DvPCSGdGtlr 193 (730)
+-+|...+|+..|+.-.+.++.+|+.+.+..+..|..- .. ||.|.+=+=
T Consensus 95 tLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----------------------~~~~D~vtsRAv-------- 144 (215)
T COG0357 95 TLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----------------------KKQYDVVTSRAV-------- 144 (215)
T ss_pred EEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----------------------cccCcEEEeehc--------
Confidence 99999999999999999999999999999988876421 12 999987221
Q ss_pred cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 194 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 194 k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velv 261 (730)
+.+ ..++.-+..++|+||.++.---.-...|- .-+..+....++.++.+
T Consensus 145 -----------------a~L-~~l~e~~~pllk~~g~~~~~k~~~~~~e~-~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 145 -----------------ASL-NVLLELCLPLLKVGGGFLAYKGLAGKDEL-PEAEKAILPLGGQVEKV 193 (215)
T ss_pred -----------------cch-HHHHHHHHHhcccCCcchhhhHHhhhhhH-HHHHHHHHhhcCcEEEE
Confidence 111 23677788999998886521112222222 22344445555555444
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0016 Score=68.95 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=69.2
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
+...++++++.||.+++|.|+.|..|++. ...|+|+|+|+..+..|.+... ...|+.++++|+-.+.
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-----------~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d 89 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLER-----------AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD 89 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhh-----------cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCc
Confidence 34567888999999999999999999987 4679999999999999987654 3578999999998754
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
.-. ...+++|+.+-|++=+
T Consensus 90 ~~~--------------------l~~~~~vVaNlPY~Is 108 (259)
T COG0030 90 FPS--------------------LAQPYKVVANLPYNIS 108 (259)
T ss_pred chh--------------------hcCCCEEEEcCCCccc
Confidence 210 0168999999996543
No 201
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.06 E-value=0.0017 Score=72.46 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCcccCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n--v~vt~~Da~~fp~~~~~~ 156 (730)
+-+|||.-||+|--++..+.-+.+ ...|++||+|+..+++++.|++.+++.. +.+.+.||..+-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~--------~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----- 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAG--------VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----- 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SS--------ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----
T ss_pred CceEEeccccccHHHHHHHHHcCC--------CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----
Confidence 458999999999999988776543 3689999999999999999999999875 8888889876321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.....||.|=+||= |+ + ...|..|++.++.|| |+|.||
T Consensus 117 ---------------~~~~~fD~IDlDPf----GS------------p----------~pfldsA~~~v~~gG-ll~vTa 154 (377)
T PF02005_consen 117 ---------------SRQERFDVIDLDPF----GS------------P----------APFLDSALQAVKDGG-LLCVTA 154 (377)
T ss_dssp ---------------HSTT-EEEEEE--S----S------------------------HHHHHHHHHHEEEEE-EEEEEE
T ss_pred ---------------hccccCCEEEeCCC----CC------------c----------cHhHHHHHHHhhcCC-EEEEec
Confidence 12378999999983 32 0 236889999999976 556678
Q ss_pred CC
Q 004787 237 SM 238 (730)
Q Consensus 237 Sl 238 (730)
|=
T Consensus 155 TD 156 (377)
T PF02005_consen 155 TD 156 (377)
T ss_dssp --
T ss_pred cc
Confidence 73
No 202
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.05 E-value=0.0017 Score=66.41 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=76.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~-vt~~Da~~fp~~~~~~~ 157 (730)
.-.||.++||||.---. + ...|.-.|+.+|.+++.-..+...++...-.++. ++.+++.++|.+
T Consensus 77 K~~vLEvgcGtG~Nfkf----y------~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l----- 141 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKF----Y------PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL----- 141 (252)
T ss_pred ccceEEecccCCCCccc----c------cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-----
Confidence 34689999999963211 1 1135678999999999999998888776555665 788888888753
Q ss_pred CCCCCccccccccccccccccEEEec-CCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCD-VPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~D-vPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...++|.|+|- +=|| +.-+.++|.+.-++|||||++++-
T Consensus 142 ---------------~d~s~DtVV~TlvLCS-----------------------ve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 142 ---------------ADGSYDTVVCTLVLCS-----------------------VEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred ---------------ccCCeeeEEEEEEEec-----------------------cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 13789999873 2233 334578899999999999999984
No 203
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.04 E-value=0.0029 Score=64.19 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
++||.+|||++||-|....+|.+. .....+++|+|+..+..++. .| +.|..+|...-.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~----------k~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL----- 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE----------KQVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGL----- 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh----------cCCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhH-----
Confidence 578999999999999876666543 14578999999998775544 23 456777765411
Q ss_pred CCCCCCCccccccccccccccccEEEe
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLC 182 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~ 182 (730)
..+....||.|++
T Consensus 69 --------------~~f~d~sFD~VIl 81 (193)
T PF07021_consen 69 --------------ADFPDQSFDYVIL 81 (193)
T ss_pred --------------hhCCCCCccEEeh
Confidence 1123478999997
No 204
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0064 Score=67.57 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=91.6
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCC-------------------------------CCCCCCCeEEEEEeCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQST-------------------------------NPGALPNGMVIANDLD 120 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~-------------------------------~~~~~p~G~VvAnD~d 120 (730)
++.+.+++..++|--||+|...+.+|.+-.+-. +.+ .+--.+++.|+|
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~-~~~~~~~G~Did 263 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG-KELPIIYGSDID 263 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc-CccceEEEecCC
Confidence 345678889999999999999888765532100 000 001158899999
Q ss_pred HHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh
Q 004787 121 VQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW 199 (730)
Q Consensus 121 ~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~ 199 (730)
++.++.++.|+.+.|+.. |.+...|++.++.- ...+|.|+|+||. |...
T Consensus 264 ~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---------------------~~~~gvvI~NPPY-GeRl-------- 313 (381)
T COG0116 264 PRHIEGAKANARAAGVGDLIEFKQADATDLKEP---------------------LEEYGVVISNPPY-GERL-------- 313 (381)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---------------------CCcCCEEEeCCCc-chhc--------
Confidence 999999999999999864 77888888876531 1579999999994 2211
Q ss_pred hhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 200 RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 200 ~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
+.......+...+....-+.++-.++.|++|-
T Consensus 314 -----g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 314 -----GSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -----CChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 11122344777788888788888888888753
No 205
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.01 E-value=0.002 Score=73.50 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=85.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+-.|||++||.|--+...+.+.... ....+|+|+|.++.....|++.+++.+. ..|.|++.|.+.+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~-----~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l------ 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARA-----GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL------ 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHH-----CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHh-----CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC------
Confidence 5689999999999876655543211 0246999999999999999888888886 569999999887531
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
..++|.|+.-. .|. .+...+-.+.|..+-++|||||+++=+.++
T Consensus 256 ----------------pekvDIIVSEl----LGs----------------fg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t 299 (448)
T PF05185_consen 256 ----------------PEKVDIIVSEL----LGS----------------FGDNELSPECLDAADRFLKPDGIMIPSSYT 299 (448)
T ss_dssp ----------------SS-EEEEEE-------BT----------------TBTTTSHHHHHHHGGGGEEEEEEEESSEEE
T ss_pred ----------------CCceeEEEEec----cCC----------------ccccccCHHHHHHHHhhcCCCCEEeCcchh
Confidence 25899999732 121 122334456788888999999999944444
Q ss_pred --CCCCCcHHHHHHHH
Q 004787 238 --MNPVENEAVVAEIL 251 (730)
Q Consensus 238 --l~p~ENEaVV~~~L 251 (730)
+.|++.+..-.++.
T Consensus 300 ~ylaPiss~~l~~~~~ 315 (448)
T PF05185_consen 300 SYLAPISSPKLYQEVR 315 (448)
T ss_dssp EEEEEEE-HHHHHHHH
T ss_pred hEEEEeeCHHHHHHHH
Confidence 66888887666554
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.98 E-value=0.0079 Score=72.39 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=82.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCC----------------------------------CCCeEEEEEeCCHH
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGA----------------------------------LPNGMVIANDLDVQ 122 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~----------------------------------~p~G~VvAnD~d~~ 122 (730)
+++..++|-+||+|...+.+|.+..+.. ++. .....|+|+|+|+.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~-pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~ 267 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIA-PGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPR 267 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCC-CCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHH
Confidence 5789999999999999888776533100 000 01247999999999
Q ss_pred HHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh
Q 004787 123 RCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK 201 (730)
Q Consensus 123 Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~ 201 (730)
.+..+++|+++.|+.+ +.+.+.|+..++.. .....||.|++|||.-. -.
T Consensus 268 av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-------------------~~~~~~d~IvtNPPYg~-r~---------- 317 (702)
T PRK11783 268 VIQAARKNARRAGVAELITFEVKDVADLKNP-------------------LPKGPTGLVISNPPYGE-RL---------- 317 (702)
T ss_pred HHHHHHHHHHHcCCCcceEEEeCChhhcccc-------------------cccCCCCEEEECCCCcC-cc----------
Confidence 9999999999999865 77888888775421 11246999999999522 10
Q ss_pred cccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 202 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 202 w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
+....+..+..++ -..++...+|++++.-|
T Consensus 318 ---~~~~~l~~lY~~l-g~~lk~~~~g~~~~llt 347 (702)
T PRK11783 318 ---GEEPALIALYSQL-GRRLKQQFGGWNAALFS 347 (702)
T ss_pred ---CchHHHHHHHHHH-HHHHHHhCCCCeEEEEe
Confidence 1112333444443 34455555888886544
No 207
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.83 E-value=0.014 Score=62.72 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=90.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce-EEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL-IVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv-~vt~~Da~~fp~~~~~~ 156 (730)
..-+|||+|||+|.--+-+++.... . .-.|.-+|.++.-+...+..++..|..++ .+.+.||.+...+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~------~-~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~--- 204 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE------R-PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA--- 204 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC------C-CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh---
Confidence 3459999999999875555444221 1 24899999999999999999999999887 89999987643221
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
......+.+++ +|...--|| ..+-.+.|.-....+.|||+|||+.=
T Consensus 205 ---------------~l~p~P~l~iV------sGL~ElF~D-------------n~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 205 ---------------ALDPAPTLAIV------SGLYELFPD-------------NDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred ---------------ccCCCCCEEEE------ecchhhCCc-------------HHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 11245677877 333221111 01223346666778999999999877
Q ss_pred CCCCCCcHHHHHHHHHHCC
Q 004787 237 SMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~ 255 (730)
-+||. -..|+.+|..|.
T Consensus 251 PwHPQ--le~IAr~LtsHr 267 (311)
T PF12147_consen 251 PWHPQ--LEMIARVLTSHR 267 (311)
T ss_pred CCCcc--hHHHHHHHhccc
Confidence 78775 246788887763
No 208
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.79 E-value=0.0056 Score=63.53 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=78.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
..+..+..+|+|++.|.|..+..+++.. |.-+++..|. +.-+..+.. ..++.+..+|... .+
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~--~~ 156 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAY---------PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD--PL 156 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHS---------TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT--CC
T ss_pred cccccCccEEEeccCcchHHHHHHHHHC---------CCCcceeecc-Hhhhhcccc------ccccccccccHHh--hh
Confidence 4566777899999999999999998773 5678999998 444443333 5678888887642 11
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC--CE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG--GR 230 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG--Gr 230 (730)
+. +|.|++ ..+.+.|+... -..||+++.+.|+|| |+
T Consensus 157 ---------------------P~-~D~~~l-------------~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 157 ---------------------PV-ADVYLL-------------RHVLHDWSDED-------CVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp ---------------------SS-ESEEEE-------------ESSGGGS-HHH-------HHHHHHHHHHHSEECTTEE
T ss_pred ---------------------cc-ccceee-------------ehhhhhcchHH-------HHHHHHHHHHHhCCCCCCe
Confidence 13 899987 12455565443 367999999999999 99
Q ss_pred EEEEcCCCCCCCcHHHH
Q 004787 231 IVYSTCSMNPVENEAVV 247 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV 247 (730)
|+..-.-+.....+...
T Consensus 195 llI~e~~~~~~~~~~~~ 211 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPS 211 (241)
T ss_dssp EEEEEEEECSSSSSHHH
T ss_pred EEEEeeccCCCCCCchH
Confidence 99887766555554443
No 209
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.75 E-value=0.0058 Score=64.61 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
..+++||++||-|+.|..++.+. ..|+|.|+|..+...|.+ -|. .+...+ .+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-----------~~v~aTE~S~~Mr~rL~~----kg~---~vl~~~--~w~------- 146 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-----------KEVYATEASPPMRWRLSK----KGF---TVLDID--DWQ------- 146 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-----------ceEEeecCCHHHHHHHHh----CCC---eEEehh--hhh-------
Confidence 35789999999999999998764 469999999888665543 343 333222 221
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....+||.|-| .-.+. + +..-..+|....+.|+|+|++|.+
T Consensus 147 --------------~~~~~fDvIsc------LNvLD-------R---------c~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 147 --------------QTDFKFDVISC------LNVLD-------R---------CDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------------ccCCceEEEee------hhhhh-------c---------cCCHHHHHHHHHHHhCCCCEEEEE
Confidence 11257999987 11111 1 112245788889999999999865
No 210
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.73 E-value=0.011 Score=61.94 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=72.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc-CCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~-fp~~~~~~ 156 (730)
.|.+|| |-|=+--|+..+.+.+. ...|+.+|+|..-+..+.+.+++.|.+ +....+|.++ +|.
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~~--------~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~----- 107 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTGL--------PKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE----- 107 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT----------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T-----
T ss_pred cCCEEE--EEcCCcHHHHHHHhhCC--------CCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH-----
Confidence 467777 44556555555444332 468999999999999999999999988 8899998876 221
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.-.++||.++.|||.+-.|. .-.|.||++.||.-|..+|-.+
T Consensus 108 ---------------~~~~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 108 ---------------ELRGKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp ---------------TTSS-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE
T ss_pred ---------------HHhcCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEE
Confidence 11278999999999666553 2368999999997775667656
Q ss_pred CCCCC-CcH-HHHHHHHHHCC
Q 004787 237 SMNPV-ENE-AVVAEILRKCE 255 (730)
Q Consensus 237 Sl~p~-ENE-aVV~~~L~~~~ 255 (730)
|..+. -.+ .-|+++|.+.|
T Consensus 150 ~~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 150 THKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp -TTT--HHHHHHHHHHHHTS-
T ss_pred ecCcCcHHHHHHHHHHHHHCC
Confidence 65442 122 35788888765
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0015 Score=63.38 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=56.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.|..++|+|||.|.-+++. .+.. .-.|+++|+|+..++....|+..+-+. +.+.+.|...
T Consensus 48 Egkkl~DLgcgcGmLs~a~-sm~~---------~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdild--------- 107 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF-SMPK---------NESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILD--------- 107 (185)
T ss_pred cCcchhhhcCchhhhHHHh-hcCC---------CceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccc---------
Confidence 5889999999999987443 3322 368999999999999999998876543 2333333222
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (730)
.....+.||.++.||| .||
T Consensus 108 ------------le~~~g~fDtaviNpp---FGT 126 (185)
T KOG3420|consen 108 ------------LELKGGIFDTAVINPP---FGT 126 (185)
T ss_pred ------------hhccCCeEeeEEecCC---CCc
Confidence 1122378999999999 455
No 212
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.63 E-value=0.0012 Score=67.88 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~ 156 (730)
--+.|+|..+|-||-|+|.|.. .-.|+|+|+|+-++++++||++-.|+++ +.+.++|....-.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-----------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~----- 157 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-----------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS----- 157 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-----------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH-----
Confidence 4568899999999999988654 3579999999999999999999999876 6667777543110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccCh
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAP 196 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~p 196 (730)
........+|.|+.=||=+|.|-++...
T Consensus 158 ------------~lq~~K~~~~~vf~sppwggp~y~~~~~ 185 (263)
T KOG2730|consen 158 ------------KLKADKIKYDCVFLSPPWGGPSYLRADV 185 (263)
T ss_pred ------------HHhhhhheeeeeecCCCCCCcchhhhhh
Confidence 0112223477888889999988876543
No 213
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.55 E-value=0.012 Score=60.80 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=89.0
Q ss_pred ccCcEEEccccccchhhccCCCC--CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQP--DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~p--g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR 133 (730)
.+-.+.+|-.-+.-...+|++.+ ...|||++||+|--+..|.+ +.-..+++|+|+.+++.+.+. +
T Consensus 26 nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-----------~Gh~wiGvDiSpsML~~a~~~--e 92 (270)
T KOG1541|consen 26 NSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-----------SGHQWIGVDISPSMLEQAVER--E 92 (270)
T ss_pred cceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-----------CCceEEeecCCHHHHHHHHHh--h
Confidence 33456677776667777777766 67999999999976555432 134689999999999998862 2
Q ss_pred cCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004787 134 MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (730)
Q Consensus 134 lg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (730)
+- ..++ ..|.- ....+..+.||.|+.= +. + .|--.....+|.-
T Consensus 93 ~e-gdli--l~DMG--------------------~GlpfrpGtFDg~ISI------SA------v--QWLcnA~~s~~~P 135 (270)
T KOG1541|consen 93 LE-GDLI--LCDMG--------------------EGLPFRPGTFDGVISI------SA------V--QWLCNADKSLHVP 135 (270)
T ss_pred hh-cCee--eeecC--------------------CCCCCCCCccceEEEe------ee------e--eeecccCccccCh
Confidence 22 1121 11111 1123445889988741 00 0 2322222233444
Q ss_pred HHHHH---HHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 214 QVQIA---MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 214 Q~~IL---~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
+.+|+ ..-+.+|+.|++-|+= ...||++.+..++..
T Consensus 136 ~~Rl~~FF~tLy~~l~rg~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 136 KKRLLRFFGTLYSCLKRGARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred HHHHHHHhhhhhhhhccCceeEEE----ecccchHHHHHHHHH
Confidence 44443 3456789999999873 455899998888865
No 214
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.49 E-value=0.0044 Score=64.68 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=32.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHH
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN 125 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~ 125 (730)
-.|..|||++||||++|..+++. +.+.|+|+|++...+.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----------ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----------GAKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----------CCCEEEEEeCCHHHHH
Confidence 36889999999999999998875 2478999999997554
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.37 E-value=0.015 Score=62.69 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=84.4
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHE 145 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg----~~nv~vt~~D 145 (730)
++++..++| .+||=++-|.|+.+-.++... +--+++++|+|++-+.+.+.-+.... -+.+.+...|
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~---------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL---------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC---------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 445556677 699999999999988887653 24689999999999999888765443 3567788888
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
+..|-.- ...+||+|++|.- |+. ... ..| ......+.+.+.|
T Consensus 139 g~~~v~~--------------------~~~~fDvIi~D~t---dp~-gp~------------~~L--ft~eFy~~~~~~L 180 (282)
T COG0421 139 GVEFLRD--------------------CEEKFDVIIVDST---DPV-GPA------------EAL--FTEEFYEGCRRAL 180 (282)
T ss_pred HHHHHHh--------------------CCCcCCEEEEcCC---CCC-Ccc------------ccc--CCHHHHHHHHHhc
Confidence 8776321 1147999999963 221 001 111 2345677788899
Q ss_pred cCCCEEEEEcCC
Q 004787 226 KVGGRIVYSTCS 237 (730)
Q Consensus 226 KpGGrLVYSTCS 237 (730)
+++|.+|.-+=|
T Consensus 181 ~~~Gi~v~q~~~ 192 (282)
T COG0421 181 KEDGIFVAQAGS 192 (282)
T ss_pred CCCcEEEEecCC
Confidence 999999987544
No 216
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.33 E-value=0.035 Score=57.95 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=72.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH------------HHcCCCceEEEe
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT------------KRMCTANLIVTN 143 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl------------kRlg~~nv~vt~ 143 (730)
+.++.+||+..||-|--...||+. .-.|+|+|+++..+..+.+.. ++....++.+.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~-----------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK-----------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC-----------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE
Confidence 346789999999999999988875 246999999999998875421 112223567777
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004787 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (730)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (730)
+|...++... .....||.|.- - ...-.| .|+ ...+.+.+..+
T Consensus 110 gD~f~l~~~~------------------~~~~~fD~VyD-r--a~~~Al--pp~---------------~R~~Y~~~l~~ 151 (226)
T PRK13256 110 ADIFNLPKIA------------------NNLPVFDIWYD-R--GAYIAL--PND---------------LRTNYAKMMLE 151 (226)
T ss_pred ccCcCCCccc------------------cccCCcCeeee-e--hhHhcC--CHH---------------HHHHHHHHHHH
Confidence 7776653200 01146888752 1 011111 122 23456777888
Q ss_pred hccCCCEEEEEcCCC
Q 004787 224 LLKVGGRIVYSTCSM 238 (730)
Q Consensus 224 lLKpGGrLVYSTCSl 238 (730)
+|+|||+++.-|-..
T Consensus 152 lL~pgg~llll~~~~ 166 (226)
T PRK13256 152 VCSNNTQILLLVMEH 166 (226)
T ss_pred HhCCCcEEEEEEEec
Confidence 999999999876433
No 217
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0093 Score=65.71 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
.-+|||.-+|+|--.+-+|--+. .-.|++||++++.+++++.|++++...+..+++.||..+-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~---------~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~------- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG---------VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH------- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC---------ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH-------
Confidence 66999999999988887765432 23899999999999999999998866667788888766421
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC-
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS- 237 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS- 237 (730)
.....||.|=+||= |+ | .-.+..|++.++.||.|..+ ||
T Consensus 117 -------------~~~~~fd~IDiDPF----GS------------P----------aPFlDaA~~s~~~~G~l~vT-ATD 156 (380)
T COG1867 117 -------------ELHRAFDVIDIDPF----GS------------P----------APFLDAALRSVRRGGLLCVT-ATD 156 (380)
T ss_pred -------------hcCCCccEEecCCC----CC------------C----------chHHHHHHHHhhcCCEEEEE-ecc
Confidence 11268999999983 32 1 12578889999998987764 55
Q ss_pred CCCCCcHHHHHHHHHHCC
Q 004787 238 MNPVENEAVVAEILRKCE 255 (730)
Q Consensus 238 l~p~ENEaVV~~~L~~~~ 255 (730)
..+...- .-...+++++
T Consensus 157 ~a~L~G~-~p~~c~rkY~ 173 (380)
T COG1867 157 TAPLCGS-YPRKCRRKYG 173 (380)
T ss_pred cccccCC-ChHHHHHHhc
Confidence 4343332 3345556654
No 218
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.23 E-value=0.026 Score=65.39 Aligned_cols=154 Identities=13% Similarity=0.076 Sum_probs=88.0
Q ss_pred cccCcEEEccccccchhhccCCC--CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 55 NEIGNITRQEAVSMVPPLFLDVQ--PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~--pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
+..|.++.-...+.+.+.++++. |+..|.|||||+|+...+....++.. ...-.+++.+.......+.+.|+.
T Consensus 192 t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~-----qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 192 KSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEK-----TSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred CcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhccc-----ccceeEEEEeCchHHHHHHHHHHH
Confidence 45566665555555555566654 77899999999999876654443211 123568999999988887777765
Q ss_pred HcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCC---CccccChhhhhhcccccc
Q 004787 133 RMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD---GTLRKAPDIWRKWNVGLG 207 (730)
Q Consensus 133 Rlg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd---Gtlrk~pd~~~~w~~~~~ 207 (730)
-.+.. .+.+..+|...-|. ......||.|+++||-+.. |.+....+..+.|.....
T Consensus 267 l~~~~~~t~~~~~~dtl~~~d-------------------~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l 327 (501)
T TIGR00497 267 LHNIDYANFNIINADTLTTKE-------------------WENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTL 327 (501)
T ss_pred HcCCCccccCcccCCcCCCcc-------------------ccccccCCEEeecCCcccccccccccccccccchhcccCC
Confidence 44431 22222232211000 0112569999999998764 111100011111211222
Q ss_pred cchHHHHHHHHHHHHhhccCCCEEE
Q 004787 208 NGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 208 ~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
..+.......+.+++..|++||+..
T Consensus 328 ~~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 328 APNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred CCCchhhHHHHHHHHHhcCCCCeEE
Confidence 2334456777888889999999743
No 219
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.14 Score=51.83 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=93.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
...+|+++||+|-.|+.|+..+. |....+|.|+++..++.-.+-++.++.. +.++..|... .
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--------~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~--~------- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--------PQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLS--G------- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--------CCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHh--h-------
Confidence 45799999999999999999876 3578999999999999888877666553 4555544322 1
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCC--ccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDG--TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG--tlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...+++|+++.+||.--+- -+. ...+-..|. .+..-...--++|...-.+|.|-|.+-..+|
T Consensus 106 -------------l~~~~VDvLvfNPPYVpt~~~~i~-~~~i~~a~a--GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 106 -------------LRNESVDVLVFNPPYVPTSDEEIG-DEGIASAWA--GGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred -------------hccCCccEEEECCCcCcCCcccch-hHHHHHHHh--cCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 1227899999999854321 110 111212232 2222233345677777889999998877777
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEE
Q 004787 237 SMNPVENEAVVAEILRKCEGSVEL 260 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~~~vel 260 (730)
.-| +..-|-.+++..+-.+.+
T Consensus 170 ~~N---~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 170 RAN---KPKEILKILEKKGYGVRI 190 (209)
T ss_pred hhc---CHHHHHHHHhhcccceeE
Confidence 653 233344577765543333
No 220
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.10 E-value=0.021 Score=60.64 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=62.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~ 151 (730)
-.+++|+|.||.++-|||+-|.-|++. ...|+|+|+|+..+..|....+-... ..+.|..+|.-..+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~-----------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEA-----------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHh-----------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-
Confidence 457899999999999999999999887 46899999999999988776653332 24777777754421
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
...||.++.+.|.
T Consensus 121 ----------------------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 ----------------------LPRFDGCVSNLPY 133 (315)
T ss_pred ----------------------CcccceeeccCCc
Confidence 2569999998874
No 221
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.05 E-value=0.023 Score=57.17 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=32.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.++.+|||++||+|..+..+++.. ...++++|+++..+..+.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~----------~~~~~giD~s~~~i~~a~ 53 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK----------QVRGYGIEIDQDGVLACV 53 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc----------CCcEEEEeCCHHHHHHHH
Confidence 468899999999999887776542 235799999998776653
No 222
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.00 E-value=0.012 Score=62.89 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=55.3
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
+|+|+|||.|+.+.-+..+ + --.|+|+|+++..+..+++|.. +. +.+.|...+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G---------~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~-------- 57 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G---------FEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEK-------- 57 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C---------CEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchh--------
Confidence 6999999999998776443 1 3579999999999999888753 11 344555443210
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcccc
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
.. ...+|.|+.++||-+--...+
T Consensus 58 ----------~~-~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 58 ----------DF-IPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred ----------hc-CCCCCEEEeCCCChhhhHHhh
Confidence 00 246999999999988665443
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.99 E-value=0.014 Score=61.85 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=54.9
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
..+++.+++.|||+++|+|..|..|++. ...|+|+|+|+..+..|.+... ..+++.+.+.|+..+.
T Consensus 24 ~~~~~~~~~~VlEiGpG~G~lT~~L~~~-----------~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 24 DALDLSEGDTVLEIGPGPGALTRELLKR-----------GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHTCGTTSEEEEESSTTSCCHHHHHHH-----------SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSC
T ss_pred HhcCCCCCCEEEEeCCCCccchhhHhcc-----------cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccc
Confidence 3457779999999999999999999887 2689999999999998887554 4578999999988754
No 224
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.97 E-value=0.03 Score=58.02 Aligned_cols=114 Identities=20% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEE
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR------------MCTANLIVT 142 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR------------lg~~nv~vt 142 (730)
...++.+||+-+||.|--...||+. .-.|+|+|+++..++.+.+.... ....+|.+.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~-----------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ-----------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT-----------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC-----------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 4577889999999999888888775 35899999999999887432211 012346677
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
++|...++.. ..+.||.|+= |...-.| .|+.+. +-..+..
T Consensus 103 ~gDfF~l~~~--------------------~~g~fD~iyD---r~~l~Al--pp~~R~---------------~Ya~~l~ 142 (218)
T PF05724_consen 103 CGDFFELPPE--------------------DVGKFDLIYD---RTFLCAL--PPEMRE---------------RYAQQLA 142 (218)
T ss_dssp ES-TTTGGGS--------------------CHHSEEEEEE---CSSTTTS---GGGHH---------------HHHHHHH
T ss_pred EcccccCChh--------------------hcCCceEEEE---ecccccC--CHHHHH---------------HHHHHHH
Confidence 7776664321 1257998872 2221111 234333 3466778
Q ss_pred hhccCCCEEEEEcCCCC
Q 004787 223 SLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl~ 239 (730)
++|+|||++++.|=...
T Consensus 143 ~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 143 SLLKPGGRGLLITLEYP 159 (218)
T ss_dssp HCEEEEEEEEEEEEES-
T ss_pred HHhCCCCcEEEEEEEcC
Confidence 89999999666554443
No 225
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.93 E-value=0.028 Score=58.92 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCCCC-EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 76 VQPDH-FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~-~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
..+++ ..||++||+| +|+.+++-.- -.|||.|++...+..++... ++ .-++-...+..-
T Consensus 30 ~~~~h~~a~DvG~G~G-qa~~~iae~~----------k~VIatD~s~~mL~~a~k~~-----~~--~y~~t~~~ms~~-- 89 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNG-QAARGIAEHY----------KEVIATDVSEAMLKVAKKHP-----PV--TYCHTPSTMSSD-- 89 (261)
T ss_pred hCCCcceEEEeccCCC-cchHHHHHhh----------hhheeecCCHHHHHHhhcCC-----Cc--ccccCCcccccc--
Confidence 34566 8999999999 6555544322 47999999999998665422 11 011111111100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC-EEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG-RIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG-rLVY 233 (730)
...+......++|.|+| +-| + .|- .| .+....+.++||+.| .++.
T Consensus 90 -----------~~v~L~g~e~SVDlI~~-Aqa-----------~--HWF-----dl----e~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 90 -----------EMVDLLGGEESVDLITA-AQA-----------V--HWF-----DL----ERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -----------ccccccCCCcceeeehh-hhh-----------H--Hhh-----ch----HHHHHHHHHHcCCCCCEEEE
Confidence 00011112478999987 111 1 121 12 345566788888766 4442
Q ss_pred EcCCC-CCCCcHHHHHHHHHHCC
Q 004787 234 STCSM-NPVENEAVVAEILRKCE 255 (730)
Q Consensus 234 STCSl-~p~ENEaVV~~~L~~~~ 255 (730)
- |-- +.+-+.++..-.++.+.
T Consensus 136 W-~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 136 W-NYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred E-EccCCCcCCHHHHHHHHHHhh
Confidence 2 222 77888888887777653
No 226
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.93 E-value=0.029 Score=55.83 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=62.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEecccccCCCc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC---TANLIVTNHEAQHFPGC 152 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg---~~nv~vt~~Da~~fp~~ 152 (730)
...+.+||+++||.|--++.++.+.+ ...|++-|.++ -+..++.|+++++ ..++.+...+=..- .
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~---------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~--~ 110 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG---------AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDE--L 110 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T----------SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS---H
T ss_pred hcCCceEEEECCccchhHHHHHhccC---------CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCc--c
Confidence 45688999999999977776665522 46899999999 9999999998876 23444443321110 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.........||.||+ |+=+ . ...-..++....++|+++|.
T Consensus 111 ---------------~~~~~~~~~~D~IlasDv~Y----------------~-------~~~~~~L~~tl~~ll~~~~~- 151 (173)
T PF10294_consen 111 ---------------DSDLLEPHSFDVILASDVLY----------------D-------EELFEPLVRTLKRLLKPNGK- 151 (173)
T ss_dssp ---------------HHHHHS-SSBSEEEEES--S------------------------GGGHHHHHHHHHHHBTT-TT-
T ss_pred ---------------cccccccccCCEEEEecccc----------------h-------HHHHHHHHHHHHHHhCCCCE-
Confidence 001112357999995 3311 1 11223456666778999998
Q ss_pred EEEcCCCCC
Q 004787 232 VYSTCSMNP 240 (730)
Q Consensus 232 VYSTCSl~p 240 (730)
||..+....
T Consensus 152 vl~~~~~R~ 160 (173)
T PF10294_consen 152 VLLAYKRRR 160 (173)
T ss_dssp EEEEEE-S-
T ss_pred EEEEeCEec
Confidence 555555543
No 227
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.82 E-value=0.03 Score=52.86 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=47.9
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da 146 (730)
.|||++|+.|..+..++... +.+.|+|+|.++..+..|+.+++.++..++.+.+...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~---------~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG---------AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhC---------CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 48999999999999887752 3469999999999999999999988887777766543
No 228
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.0085 Score=68.03 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=84.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE-EEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~-vt~~Da~~fp~ 151 (730)
+-+-.++-+|||.-+|+|--++.-|.-+.+ -+.|+|||.+...+.....|++.+++..+. ....||...
T Consensus 104 ~~~~~~~l~vLealsAtGlrslRya~El~~--------v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~l-- 173 (525)
T KOG1253|consen 104 LKREEKSLRVLEALSATGLRSLRYAKELPG--------VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVL-- 173 (525)
T ss_pred hhhccCcchHHHHhhhhhHHHHHHHHHhcc--------hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHH--
Confidence 334567889999999999999999888765 478999999999999999999988876644 444455431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
+.........||.|=+||= |+- -..|+.|++.++.|| |
T Consensus 174 ---------------M~~~~~~~~~FDvIDLDPy----Gs~----------------------s~FLDsAvqav~~gG-L 211 (525)
T KOG1253|consen 174 ---------------MYEHPMVAKFFDVIDLDPY----GSP----------------------SPFLDSAVQAVRDGG-L 211 (525)
T ss_pred ---------------HHhccccccccceEecCCC----CCc----------------------cHHHHHHHHHhhcCC-E
Confidence 0111122367999999984 321 136899999999988 5
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
++.|||=
T Consensus 212 L~vT~TD 218 (525)
T KOG1253|consen 212 LCVTCTD 218 (525)
T ss_pred EEEEecc
Confidence 5678983
No 229
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.74 E-value=0.2 Score=51.57 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=83.4
Q ss_pred EEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCC
Q 004787 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 82 VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
|+|+||=-|.-...|++. ....+|+|+|+++.=+..++.++++.|.. .+.+..+|+... +.
T Consensus 1 vaDIGtDHgyLpi~L~~~---------~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~--l~------- 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN---------GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV--LK------- 62 (205)
T ss_dssp EEEET-STTHHHHHHHHT---------TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----------
T ss_pred CceeccchhHHHHHHHhc---------CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc--cC-------
Confidence 789999999988888764 12468999999999999999999999864 477888876541 10
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p 240 (730)
.....|.|+. +|.|. .+-.+||.++...++...++|. | |
T Consensus 63 ------------~~e~~d~ivI----AGMGG--------------------~lI~~ILe~~~~~~~~~~~lIL--q---P 101 (205)
T PF04816_consen 63 ------------PGEDVDTIVI----AGMGG--------------------ELIIEILEAGPEKLSSAKRLIL--Q---P 101 (205)
T ss_dssp ------------GGG---EEEE----EEE-H--------------------HHHHHHHHHTGGGGTT--EEEE--E---E
T ss_pred ------------CCCCCCEEEE----ecCCH--------------------HHHHHHHHhhHHHhccCCeEEE--e---C
Confidence 0123677776 45552 3567899999988887778886 3 4
Q ss_pred CCcHHHHHHHHHHCCCcEEEEe
Q 004787 241 VENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 241 ~ENEaVV~~~L~~~~~~velvd 262 (730)
.-+...+..+|..++ +.+++
T Consensus 102 ~~~~~~LR~~L~~~g--f~I~~ 121 (205)
T PF04816_consen 102 NTHAYELRRWLYENG--FEIID 121 (205)
T ss_dssp SS-HHHHHHHHHHTT--EEEEE
T ss_pred CCChHHHHHHHHHCC--CEEEE
Confidence 478999999999876 66655
No 230
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.73 E-value=0.029 Score=55.03 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=56.5
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004787 115 IANDLDVQRCNLLIHQTKRMC---TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (730)
Q Consensus 115 vAnD~d~~Rl~~L~~nlkRlg---~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (730)
+|+|+++.+++.++.+.+..+ ..++.+...|+..+|. ....||.|++. .+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---------------------~~~~fD~v~~~-----~~- 53 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---------------------DDCEFDAVTMG-----YG- 53 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC---------------------CCCCeeEEEec-----ch-
Confidence 479999999999877654322 3568888888887652 12579999961 11
Q ss_pred cccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 192 lrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
++.-+ -..+.|++..++|||||+++....+.
T Consensus 54 l~~~~----------------d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 54 LRNVV----------------DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred hhcCC----------------CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 11111 13567899999999999998776553
No 231
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.62 E-value=0.04 Score=59.83 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=73.3
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC------CCceEEEecccccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC------TANLIVTNHEAQHFP 150 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg------~~nv~vt~~Da~~fp 150 (730)
++++.||||+||-||-..-.-.+ .-|.+|++|+..--+..++.+.+.+. +-...+..+|-..-
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA----------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~- 184 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA----------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE- 184 (389)
T ss_pred ccccccceeccCCcccHhHhhhh----------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh-
Confidence 68999999999999964443211 24789999997766665555443321 11123333332210
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. + .+. ......+||+|=|---|- -.|. -...-+..|+++.++|||||.
T Consensus 185 ~--l---------~d~---~e~~dp~fDivScQF~~H------------YaFe------tee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 185 R--L---------MDL---LEFKDPRFDIVSCQFAFH------------YAFE------TEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred H--H---------HHh---ccCCCCCcceeeeeeeEe------------eeec------cHHHHHHHHHHHHhhcCCCcE
Confidence 0 0 000 001123489887622110 0011 112235678999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
++-++ =|-.||-.=|+..
T Consensus 233 FIgTi------Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 233 FIGTI------PDSDVIIKRLRAG 250 (389)
T ss_pred EEEec------CcHHHHHHHHHhc
Confidence 98753 4667777777654
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.19 E-value=0.056 Score=55.14 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE 145 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~D 145 (730)
.|.+|||+|||+|--+...+.. +...|++.|+++.....+..|++.+|+ ++.++..|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a----------GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA----------GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHAD 135 (218)
T ss_pred ccceeeecccccChHHHHHHHh----------hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeecc
Confidence 4899999999999765544332 246899999999999999999988875 45555544
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.15 E-value=0.42 Score=52.46 Aligned_cols=134 Identities=8% Similarity=-0.012 Sum_probs=80.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE--EecccccCCCcc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV--TNHEAQHFPGCR 153 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~v--t~~Da~~fp~~~ 153 (730)
+.++..++|+|||.|.||..|++.|.... ....-+++|+|...+..+..++..-..+.+.+ +.+|-..-...
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~-----~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~- 147 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQK-----KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW- 147 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcC-----CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh-
Confidence 35678999999999999999999986421 13467999999999999888887333455555 33333221000
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~-lLKpGGrLV 232 (730)
+. ..........|+. |=|.-|-+ -..-...+|++..+ .|+|||.|+
T Consensus 148 l~--------------~~~~~~~~r~~~f--lGSsiGNf-----------------~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 148 LK--------------RPENRSRPTTILW--LGSSIGNF-----------------SRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred cc--------------cccccCCccEEEE--eCccccCC-----------------CHHHHHHHHHHHHHhhCCCCCEEE
Confidence 00 0000122344443 22222211 12234567777777 899999999
Q ss_pred EEcCCCCCCCcHHHHHHHH
Q 004787 233 YSTCSMNPVENEAVVAEIL 251 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L 251 (730)
.. +--..+.++|..+=
T Consensus 195 iG---~D~~k~~~~l~~AY 210 (319)
T TIGR03439 195 IG---LDGCKDPDKVLRAY 210 (319)
T ss_pred Ee---cCCCCCHHHHHHHh
Confidence 85 34446666654433
No 234
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.13 E-value=0.016 Score=52.30 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=40.2
Q ss_pred EeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCCCCCCC
Q 004787 83 LDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSA 161 (730)
Q Consensus 83 LDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~~~~~~ 161 (730)
|.++++.|.-|..+++.+... ..++++++|..+. .......+++.+. .++.++.++...+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~---------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN------GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLP---------- 63 (106)
T ss_dssp --------------------------------EEEESS-------------GGG-BTEEEEES-THHHHH----------
T ss_pred Ccccccccccccccccccccc------ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHH----------
Confidence 567888999999999887642 1258999999986 2223333444443 357888776654210
Q ss_pred CccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
......||.|++|..=+. ....+-+..++..|+|||.||+
T Consensus 64 ---------~~~~~~~dli~iDg~H~~-----------------------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 64 ---------SLPDGPIDLIFIDGDHSY-----------------------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ---------HHHH--EEEEEEES---H-----------------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred ---------HcCCCCEEEEEECCCCCH-----------------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 111368999999985111 2234557888999999999986
No 235
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.08 E-value=0.055 Score=56.75 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
.||.++||-|+...-|++.-. .+.-.|+|+|-++..+.+++.+....- ..+.....|... |.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~-------n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~-~~~-------- 136 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP-------NNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS-PSL-------- 136 (264)
T ss_pred hheeeccCCCcccchhhhcCC-------CCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc-hhc--------
Confidence 899999999999988876532 235799999999999999988765432 223333333322 100
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH-HHHHHHHHHHHhhccCCCEEEEE
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~-~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
......+.+|.|.+ ++. ...++ .-+.+.+.+..++|||||.|++.
T Consensus 137 --------~~~~~~~svD~it~---------------IFv------LSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 137 --------KEPPEEGSVDIITL---------------IFV------LSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred --------cCCCCcCccceEEE---------------EEE------EeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01123366776654 110 00111 12345778889999999999975
No 236
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=94.93 E-value=0.11 Score=57.02 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=73.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~ 156 (730)
.+..|||++||+|-.++-.|++ +...|+|+|.+.-. ..+...++.++..+ +.++.+....+ .
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA----------GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi---~--- 122 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA----------GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI---E--- 122 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh----------CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE---e---
Confidence 5889999999999888877665 25799999987766 77888888888876 55665544432 1
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.+..++|.|+. -|.-. ..-+-...-.+|..==+.|++||.|.=++|
T Consensus 123 ---------------LP~eKVDiIvS---------------EWMGy----~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 123 ---------------LPVEKVDIIVS---------------EWMGY----FLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred ---------------cCccceeEEee---------------hhhhH----HHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 11378999986 22110 000011122233333468999999998889
Q ss_pred CCC
Q 004787 237 SMN 239 (730)
Q Consensus 237 Sl~ 239 (730)
++.
T Consensus 169 ~l~ 171 (346)
T KOG1499|consen 169 TLY 171 (346)
T ss_pred eEE
Confidence 864
No 237
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.91 E-value=0.11 Score=53.50 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
.+++.+++..+|++||-|.-.+|+|-..+ -...+++|+.+.++..+..+.+
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~---------~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG---------CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH-----------SEEEEEE-SHHHHHHHHHHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcC---------CcEEEEEEechHHHHHHHHHHH
Confidence 35688999999999999998888875532 3579999999999887776554
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.89 E-value=0.057 Score=56.52 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRC 124 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl 124 (730)
+|..|||++|.+||+|--+++. +..+|+|+|+...-+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~----------gAk~VyavDVG~~Ql 115 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR----------GAKHVYAVDVGYGQL 115 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc----------CCcEEEEEEccCCcc
Confidence 6889999999999999998774 357999999976543
No 239
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.58 E-value=0.15 Score=56.34 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=65.5
Q ss_pred cCCCCCCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++||++|+=.++| -|..+.|+|..++ ..|+|+|.+.+..+.+ +++|...+.... |...+..+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g----------a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~ 226 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG----------AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAV 226 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC----------CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHh
Confidence 368999999999887 3455777777653 5899999999988765 457766544333 33332211
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.||.=+| . .-+..++++|++||+||
T Consensus 227 ---------------------~~~~d~ii~tv~----~-------------------------~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 227 ---------------------KEIADAIIDTVG----P-------------------------ATLEPSLKALRRGGTLV 256 (339)
T ss_pred ---------------------HhhCcEEEECCC----h-------------------------hhHHHHHHHHhcCCEEE
Confidence 123999997333 1 23566889999999998
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
-.
T Consensus 257 ~v 258 (339)
T COG1064 257 LV 258 (339)
T ss_pred EE
Confidence 74
No 240
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.41 E-value=0.055 Score=56.43 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=80.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
++..+-.++||++||+|-..-.|=.+ .-++.++|+|..++..+.+. |.-. ..+..++..|..
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~-----------a~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~-- 182 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDM-----------ADRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLE-- 182 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHH-----------HhhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhh--
Confidence 34555689999999999766666444 24789999999988766542 1110 112334444421
Q ss_pred cCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
......||.|.. || .....--..++.-+..+|+|||.+.
T Consensus 183 -----------------~~~~er~DLi~AaDV-----------------------l~YlG~Le~~~~~aa~~L~~gGlfa 222 (287)
T COG4976 183 -----------------DLTQERFDLIVAADV-----------------------LPYLGALEGLFAGAAGLLAPGGLFA 222 (287)
T ss_pred -----------------hccCCcccchhhhhH-----------------------HHhhcchhhHHHHHHHhcCCCceEE
Confidence 012368999874 22 1111122456778889999999999
Q ss_pred EEcCCCCCCC------------cHHHHHHHHHHCCCcEEEEec
Q 004787 233 YSTCSMNPVE------------NEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 233 YSTCSl~p~E------------NEaVV~~~L~~~~~~velvd~ 263 (730)
||.=++.-.- -|.-|...|..+| ++++.+
T Consensus 223 FSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~G--l~~i~~ 263 (287)
T COG4976 223 FSVETLPDDGGFVLGPSQRYAHSESYVRALLAASG--LEVIAI 263 (287)
T ss_pred EEecccCCCCCeecchhhhhccchHHHHHHHHhcC--ceEEEe
Confidence 9987764332 2455666676665 455554
No 241
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.33 E-value=0.45 Score=49.03 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=78.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE-EecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV-TNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~v-t~~Da~~fp~~~~~~~ 157 (730)
+.+||.++||+|-.+.+.|..+. .-.-.--|.+......+..-+...+.+|+.- ..-|+..-+-
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP---------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w------ 90 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALP---------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW------ 90 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCC---------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC------
Confidence 33799999999999999999864 3445566888888888888777777776421 1122222100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhh--hhcccccccchHHHHHHHHHHHHhhccCCCEEE-EE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW--RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YS 234 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~--~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV-YS 234 (730)
....+.......||.|+| -++. ..| ..-..++..|.++|++||.|+ |=
T Consensus 91 -------~~~~~~~~~~~~~D~i~~-------------~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 91 -------PWELPAPLSPESFDAIFC-------------INMLHISPW---------SAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred -------ccccccccCCCCcceeee-------------hhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEeC
Confidence 000001112468999997 0111 111 123568889999999999876 54
Q ss_pred cCC----CCCCCcHHHHHHHHHHC
Q 004787 235 TCS----MNPVENEAVVAEILRKC 254 (730)
Q Consensus 235 TCS----l~p~ENEaVV~~~L~~~ 254 (730)
--. +.++-|++- .+.|+..
T Consensus 142 PF~~~G~~ts~SN~~F-D~sLr~r 164 (204)
T PF06080_consen 142 PFNRDGKFTSESNAAF-DASLRSR 164 (204)
T ss_pred CcccCCEeCCcHHHHH-HHHHhcC
Confidence 333 234444443 5666543
No 242
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.27 E-value=0.11 Score=54.59 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=55.1
Q ss_pred hhhccCCCCCC--EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---------Cc
Q 004787 70 PPLFLDVQPDH--FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---------AN 138 (730)
Q Consensus 70 p~llLd~~pg~--~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~---------~n 138 (730)
.+.+.++++|. +|||..||-|+=++.++.. ++.|+++|.++--..++..-++|... .+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-----------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-----------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH-----------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-----------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 34456677775 9999999999999998854 36899999999999999888776521 25
Q ss_pred eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCC
Q 004787 139 LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 185 (730)
Q Consensus 139 v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvP 185 (730)
+.+.+.|+..|.. .....||+|.+||-
T Consensus 134 i~l~~~d~~~~L~--------------------~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 134 IQLIHGDALEYLR--------------------QPDNSFDVVYFDPM 160 (234)
T ss_dssp EEEEES-CCCHCC--------------------CHSS--SEEEE--S
T ss_pred CEEEcCCHHHHHh--------------------hcCCCCCEEEECCC
Confidence 7888888877542 11368999999993
No 243
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.04 E-value=0.34 Score=52.46 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=32.4
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
-+||.++|++|-=.=-||-++..... .....-.|+|.|+|...+..+++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~-~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLG-TAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhc-ccCCCcEEEEEECCHHHHHHHHhC
Confidence 59999999999654444333332100 000135799999999998877654
No 244
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.02 E-value=0.3 Score=49.91 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH--------------HHcC------C-
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT--------------KRMC------T- 136 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl--------------kRlg------~- 136 (730)
+.-+||.++|++|-=+--||-+|.........-.-.|+|.|+|...+..++.-. ++.- .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 446999999999965443333333200000001469999999999887764321 1110 0
Q ss_pred -------CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004787 137 -------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (730)
Q Consensus 137 -------~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~ 209 (730)
..+.+..+|-.. .......||.|+| +|-=+ .-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---------------------~~~~~~~fD~I~C-----------RNVlI---------YF 149 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---------------------PDPPFGRFDLIFC-----------RNVLI---------YF 149 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----------------------S------EEEEEE------------SSGG---------GS
T ss_pred eEChHHcCceEEEecccCC---------------------CCcccCCccEEEe-----------cCEEE---------Ee
Confidence 012233332222 0122368999999 11111 11
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 210 LHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
-...|.+++.+..+.|+|||.|+-..
T Consensus 150 ~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 150 DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 23578999999999999999999763
No 245
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=93.93 E-value=0.02 Score=58.94 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=70.1
Q ss_pred ccccchhh------ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 65 AVSMVPPL------FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 65 ~~Smlp~l------lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
+++-+|++ .|.+.+|...+||.-|.|+.|..|++.- +...++|.|.|+-..+++.+....+--+.
T Consensus 24 ~~~HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~---------se~k~yalDrDP~A~~La~~~s~el~~~~ 94 (303)
T KOG2782|consen 24 PSSHVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKH---------SELKNYALDRDPVARKLAHFHSDELMHPT 94 (303)
T ss_pred cccCCceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhC---------cHhhhhhhccChHHHHHHHHhhHhhcchh
Confidence 35556654 4678999999999999999999998862 35789999999988887777664332222
Q ss_pred eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004787 139 LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (730)
Q Consensus 139 v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (730)
+....+.....+.+.. +.......||-||.|--||+.-.
T Consensus 95 l~a~Lg~Fs~~~~l~~--------------~~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 95 LKAVLGNFSYIKSLIA--------------DTGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred HHHHHhhhHHHHHHHH--------------HhCCCcCCcceEEeecCcccccc
Confidence 2222232233222210 12234578999999999998653
No 246
>PRK00536 speE spermidine synthase; Provisional
Probab=93.92 E-value=0.55 Score=50.19 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=76.9
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHE 145 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~D 145 (730)
|+++.-+.| .+||=++.|-|+-.-.++.. + ..|+-+|+|..-++++++-+..+ .-+++.+...
T Consensus 65 ppl~~h~~p-k~VLIiGGGDGg~~REvLkh----------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 65 MGGCTKKEL-KEVLIVDGFDLELAHQLFKY----------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred HHHhhCCCC-CeEEEEcCCchHHHHHHHCc----------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 455555544 69999999999987776543 2 39999999999999988854432 2344554431
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
+. .....+||+|++|.. + + ....+.+.+.|
T Consensus 132 ---~~--------------------~~~~~~fDVIIvDs~----------~------~-----------~~fy~~~~~~L 161 (262)
T PRK00536 132 ---LL--------------------DLDIKKYDLIICLQE----------P------D-----------IHKIDGLKRML 161 (262)
T ss_pred ---hh--------------------hccCCcCCEEEEcCC----------C------C-----------hHHHHHHHHhc
Confidence 10 001257999999942 0 0 12234456789
Q ss_pred cCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 226 KVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 226 KpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
++||.+|.=+-|... ...++..+.+..+
T Consensus 162 ~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l~ 189 (262)
T PRK00536 162 KEDGVFISVAKHPLL--EHVSMQNALKNMG 189 (262)
T ss_pred CCCcEEEECCCCccc--CHHHHHHHHHHHH
Confidence 999999875444332 3555666666544
No 247
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.79 E-value=0.33 Score=53.16 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=77.3
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~ 156 (730)
.+..|||++||+|-.+.-++++ +..+|+|++.+.- +.-++..++.+++ ..|.|+-+.....
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA----------GA~~vYAvEAS~M-AqyA~~Lv~~N~~~~rItVI~GKiEdi------- 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA----------GAKKVYAVEASEM-AQYARKLVASNNLADRITVIPGKIEDI------- 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh----------CcceEEEEehhHH-HHHHHHHHhcCCccceEEEccCccccc-------
Confidence 4679999999999988877665 3579999998643 3333343443333 3455554433321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE--
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS-- 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS-- 234 (730)
.-+.+.|+|+..| .|+|--|..+. +--.+|-++|+|.|.+.=+
T Consensus 239 ---------------eLPEk~DviISEP----MG~mL~NERML----------------EsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 239 ---------------ELPEKVDVIISEP----MGYMLVNERML----------------ESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred ---------------cCchhccEEEecc----chhhhhhHHHH----------------HHHHHHHhhcCCCCcccCccc
Confidence 1237899999866 47765443332 2234566899999987532
Q ss_pred cCCCCCCCcHHHHHHHHHH
Q 004787 235 TCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~ 253 (730)
---+.|--+|..--+-..+
T Consensus 284 diHlAPFsDE~Ly~E~~nk 302 (517)
T KOG1500|consen 284 DIHLAPFSDEQLYVEQFNK 302 (517)
T ss_pred ceeecccchHHHHHHHHhh
Confidence 2336788888776555443
No 248
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.50 E-value=0.29 Score=46.94 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
...+...|+|+|||-|.-+..|+.++.+. .+.-.|+|+|.++.....+....++++
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~-----~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS-----SPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc-----CCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 34678899999999999999999977542 135799999999999998888888776
No 249
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.46 E-value=0.3 Score=52.05 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=52.9
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCC
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSS 160 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~ 160 (730)
+|+|+|||-|+.+.-+-++ + --.|.|+|+++..+....+|.. .+...|...+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g---------~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~--------- 55 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G---------FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDP--------- 55 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T---------EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHH---------
T ss_pred cEEEEccCccHHHHHHHhc-C---------cEEEEEeecCHHHHHhhhhccc-------cccccccccccc---------
Confidence 7999999999998877443 1 2479999999999999988875 555666665321
Q ss_pred CCccccccccccccccccEEEecCCCCCCCcccc
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
..... .+|.|+.=+||.+--...+
T Consensus 56 ---------~~l~~-~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 56 ---------SDLPK-DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp ---------HHHHH-T-SEEEEE---TTTSTTST
T ss_pred ---------ccccc-cceEEEeccCCceEecccc
Confidence 11111 5999999999999766553
No 250
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.45 E-value=0.9 Score=54.46 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcC--CCCC-CCCCeEEEEEeCCHHHHHHHHHHH----------HHc---------
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQS--TNPG-ALPNGMVIANDLDVQRCNLLIHQT----------KRM--------- 134 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~--~~~~-~~p~G~VvAnD~d~~Rl~~L~~nl----------kRl--------- 134 (730)
++.-+|||+|=|.|--++.+.+.+... .++. ....-+++++|.++-....+.+-. +.+
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344699999999999888888776310 0000 011358999998653222222211 111
Q ss_pred CCC---------ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecC--CCCCCCccccChhhhhhcc
Q 004787 135 CTA---------NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV--PCSGDGTLRKAPDIWRKWN 203 (730)
Q Consensus 135 g~~---------nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv--PCSGdGtlrk~pd~~~~w~ 203 (730)
|.. ++.+..+|+...- ..-...||.|++|+ | .|||++|..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~--------------------~~~~~~~d~~~lD~FsP-------~~np~~W~~-- 186 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELL--------------------PQLDARADAWFLDGFAP-------AKNPDMWSP-- 186 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHH--------------------HhccccccEEEeCCCCC-------ccChhhccH--
Confidence 111 1222334443210 00014699999996 5 689999875
Q ss_pred cccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcE
Q 004787 204 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSV 258 (730)
Q Consensus 204 ~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~v 258 (730)
.++....+++++||+++-.|| -..|...|...|-.+
T Consensus 187 ------------~~~~~l~~~~~~~~~~~t~t~-------a~~vr~~l~~~GF~v 222 (662)
T PRK01747 187 ------------NLFNALARLARPGATLATFTS-------AGFVRRGLQEAGFTV 222 (662)
T ss_pred ------------HHHHHHHHHhCCCCEEEEeeh-------HHHHHHHHHHcCCee
Confidence 578888889999999994444 357888998887433
No 251
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.11 E-value=0.042 Score=61.49 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=55.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEecccccCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFP 150 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~--~nv~vt~~Da~~fp 150 (730)
.+||+.|-|+|||-|-.++-++.. ..+|+|||.++.....|..|++-..+ .++.+.|+||..|-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-----------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-----------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-----------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 378999999999999998887654 47999999999999999999976654 35899999999875
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.84 E-value=0.68 Score=49.86 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=61.4
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-HcCC-CceEEEecccccCCCcccCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-RMCT-ANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk-Rlg~-~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+|+=+++||=-.|+.++...+. +...|+.+|+|+.+..+.++.++ .++. ..+.+...|+...+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~-------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~------- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG-------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT------- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT-------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--------
T ss_pred ceEEEEcCCCcchHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-------
Confidence 49999999998888877665443 24679999999999999988777 4553 44777777765422
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....||.|++-+- -|+ . ..--.+||.+..+.+++|.+|+|
T Consensus 188 --------------~dl~~~DvV~lAal---Vg~-~-----------------~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 188 --------------YDLKEYDVVFLAAL---VGM-D-----------------AEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp --------------GG----SEEEE-TT----S----------------------SHHHHHHHHHHHS-TTSEEEE
T ss_pred --------------cccccCCEEEEhhh---ccc-c-----------------cchHHHHHHHHHhhCCCCcEEEE
Confidence 11257999998221 010 0 00225688999999999999987
No 253
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=92.58 E-value=0.22 Score=51.75 Aligned_cols=105 Identities=19% Similarity=0.016 Sum_probs=64.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.-.+.||.+||-|-.|-+++--+ --.|-.+|..++-+..+++.+...+.....+.+.-.+.|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~----------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV----------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-----------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------
T ss_pred CcceEEecccccchhHHHHHHHh----------cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-------
Confidence 46799999999999998874321 3589999999999998876432211122334444444432
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....+||.|.+ .|....... .--.+.|.|+.+.|+|||.||.
T Consensus 118 --------------P~~~~YDlIW~------------------QW~lghLTD--~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 118 --------------PEEGKYDLIWI------------------QWCLGHLTD--EDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ----------------TT-EEEEEE------------------ES-GGGS-H--HHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------------CCCCcEeEEEe------------------hHhhccCCH--HHHHHHHHHHHHhCcCCcEEEE
Confidence 12368999976 665433211 2236789999999999999985
No 254
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.53 E-value=0.46 Score=52.00 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=70.1
Q ss_pred cCCCCCCEEEeecCCcchHH-HHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKT-FQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT-~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.++++|++||=|+|||=+.. ...|+.++ ...|+..|+++.|++++++ +|...+....+.. ....+
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G---------A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~-~~~~~ 230 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG---------ASDVVITDLVANRLELAKK----FGATVTDPSSHKS-SPQEL 230 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC---------CCcEEEeecCHHHHHHHHH----hCCeEEeeccccc-cHHHH
Confidence 46899999999999996664 44455554 4789999999999997654 7876554443322 00000
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
... .........||..+= |||... -++.|+..++.||++|
T Consensus 231 --~~~----------v~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 231 --AEL----------VEKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKATRSGGTVV 270 (354)
T ss_pred --HHH----------HHhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHhccCCEEE
Confidence 000 000111134888875 888663 3566788899999988
Q ss_pred EEcC
Q 004787 233 YSTC 236 (730)
Q Consensus 233 YSTC 236 (730)
..-|
T Consensus 271 lvg~ 274 (354)
T KOG0024|consen 271 LVGM 274 (354)
T ss_pred Eecc
Confidence 7644
No 255
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.17 E-value=0.5 Score=50.36 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcC---C---CC------CCCcHHHHHHHHHHCCCcEEEEec
Q 004787 211 HSLQVQIAMRGISLLKVGGRIVYSTC---S---MN------PVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGGrLVYSTC---S---l~------p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+....+.|++..++|||||.||.... | +. --=||+.|.++|++.| +.+++.
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG--~~i~~~ 237 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG--FDIEDL 237 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC--CEEEec
Confidence 44567789999999999999996532 1 10 1237899999999886 555554
No 256
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.13 E-value=2 Score=42.78 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=44.4
Q ss_pred ccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCC
Q 004787 173 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 241 (730)
Q Consensus 173 ~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ 241 (730)
....||+|+-+-|+.|.|.-. ...+......+-...+..|.++|+++|.|..+-|.-.|-
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~---------~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSED---------GKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccc---------hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 347899999999999955311 111222233466778999999999999999999998885
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=92.07 E-value=1.2 Score=49.48 Aligned_cols=113 Identities=25% Similarity=0.283 Sum_probs=74.9
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCC-CeEEEEEeCCHHHHHHHHHHHH--HcC-----CCceEEEeccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALP-NGMVIANDLDVQRCNLLIHQTK--RMC-----TANLIVTNHEA 146 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p-~G~VvAnD~d~~Rl~~L~~nlk--Rlg-----~~nv~vt~~Da 146 (730)
-++.-.+||=++-|-|--.-+|... | -+.|+-+|.|++.++...|+.- ..+ -+.+.|++.||
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellky----------P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA 355 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKY----------PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA 355 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhC----------CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH
Confidence 3566789999999988655555443 4 6899999999999999997752 222 25688999998
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004787 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (730)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (730)
.+|..- ....||.|++|-|=-. +|.+-+-+ -.+.-+-+.+.|+
T Consensus 356 f~wlr~--------------------a~~~fD~vIVDl~DP~------tps~~rlY-----------S~eFY~ll~~~l~ 398 (508)
T COG4262 356 FQWLRT--------------------AADMFDVVIVDLPDPS------TPSIGRLY-----------SVEFYRLLSRHLA 398 (508)
T ss_pred HHHHHh--------------------hcccccEEEEeCCCCC------Ccchhhhh-----------hHHHHHHHHHhcC
Confidence 886431 1258999999987111 11111111 1223334455789
Q ss_pred CCCEEEEE
Q 004787 227 VGGRIVYS 234 (730)
Q Consensus 227 pGGrLVYS 234 (730)
++|++|.-
T Consensus 399 e~Gl~VvQ 406 (508)
T COG4262 399 ETGLMVVQ 406 (508)
T ss_pred cCceEEEe
Confidence 99999853
No 258
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.55 E-value=0.1 Score=56.36 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=46.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQ 147 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~ 147 (730)
.|..|.||.||-|.+|+-.+ ++. +...|+|+|.++..+..|+++++.+++.. ..++.+|-+
T Consensus 194 ~~eviVDLYAGIGYFTlpfl--V~a-------gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R 255 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFL--VTA-------GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR 255 (351)
T ss_pred ccchhhhhhcccceEEeehh--hcc-------CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc
Confidence 36899999999999998332 222 35799999999999999999998877543 444444443
No 259
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.33 E-value=1.1 Score=48.87 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=83.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC-ceEEEecc--cccCCCccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA-NLIVTNHE--AQHFPGCRA 154 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~-nv~vt~~D--a~~fp~~~~ 154 (730)
.-++||+++|.-..--.|+..+.+ =..+|.|+|+.-+..++++++++ ++. .|.+.... ..-|..+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~---------W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~- 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG---------WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII- 172 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST-
T ss_pred ceEeecCCccHHHHHHHHhhhhcC---------CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh-
Confidence 458999999998876666665542 58999999999999999999998 664 46554332 22233221
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCC------ccccChhhhh----hccc-----cccc------chHHH
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG------TLRKAPDIWR----KWNV-----GLGN------GLHSL 213 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG------tlrk~pd~~~----~w~~-----~~~~------~L~~l 213 (730)
.....||..+|+||--.+. +-||.-+.-+ .+.+ +... +=..+
T Consensus 173 -----------------~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~F 235 (299)
T PF05971_consen 173 -----------------QPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAF 235 (299)
T ss_dssp -----------------T--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHH
T ss_pred -----------------cccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHH
Confidence 1225899999999975543 2222100000 0000 0111 11345
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC-cEEEEe
Q 004787 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVD 262 (730)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~-~velvd 262 (730)
-.+|+.....+-. ....| ||=+...+|-.-+...|++.+. .+..++
T Consensus 236 V~rMI~ES~~~~~--~v~Wf-TsmvgKkssL~~l~~~L~~~~~~~~~~~e 282 (299)
T PF05971_consen 236 VKRMIKESLQLKD--QVRWF-TSMVGKKSSLKPLKKELKKLGATNYKVTE 282 (299)
T ss_dssp HHHHHHHHHHHGG--GEEEE-EEEESSGGGHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHhCC--CcEEE-eecccCcccHHHHHHHHHhcCCceEEEEE
Confidence 6778888876532 34445 6788999999999999998763 344444
No 260
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.30 E-value=3.5 Score=35.91 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=64.5
Q ss_pred EEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc--CCCcccCCCCC
Q 004787 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH--FPGCRANKNFS 159 (730)
Q Consensus 82 VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~--fp~~~~~~~~~ 159 (730)
|||++||+|..+ .++..... ...++++|.+...+..........+...+.+...+... ++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR--------GAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--------- 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC--------CceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC---------
Confidence 999999999977 33333110 13788899999988884444333111113444444333 11
Q ss_pred CCCcccccccccccc-ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 160 SASDKGIESESNMGQ-LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~-~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
... ..||.+..... + .|.. ....+....+.|++||.++++....
T Consensus 114 ------------~~~~~~~d~~~~~~~-------------~-~~~~---------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 114 ------------FEDSASFDLVISLLV-------------L-HLLP---------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ------------CCCCCceeEEeeeee-------------h-hcCC---------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 111 36888832111 0 0000 3567888888999999999988876
Q ss_pred CCCCc
Q 004787 239 NPVEN 243 (730)
Q Consensus 239 ~p~EN 243 (730)
.....
T Consensus 159 ~~~~~ 163 (257)
T COG0500 159 DGLLE 163 (257)
T ss_pred CCCcc
Confidence 55443
No 261
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.04 E-value=1.6 Score=42.47 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=63.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCc
Q 004787 113 MVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 191 (730)
Q Consensus 113 ~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGt 191 (730)
+|+|+|+....+...+.+++..+.. ++.+.+..-.++... .....+|.|+-+- |-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-------------------i~~~~v~~~iFNL-----GY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-------------------IPEGPVDAAIFNL-----GY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---------------------S--EEEEEEEE-----SB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-------------------CccCCcCEEEEEC-----Cc
Confidence 5999999999999999999998875 466665544443221 0114678887643 32
Q ss_pred cccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCC--CcHHHHHHHHHHC
Q 004787 192 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV--ENEAVVAEILRKC 254 (730)
Q Consensus 192 lrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~--ENEaVV~~~L~~~ 254 (730)
|... ..........-..-|..|+++|++||+|+...-.=++. |....|.++++..
T Consensus 57 LPgg--------Dk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 57 LPGG--------DKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp -CTS---------TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred CCCC--------CCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 2110 01112233444667899999999999998876565652 3334446666653
No 262
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.27 E-value=3.5 Score=42.45 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=34.4
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~ 119 (730)
.+..++||+.|+|+--|.|.+|..++-.++ |+|.|+++=-
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vg--------p~G~Vy~~~p 81 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVG--------PKGKVYAYVP 81 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcC--------CceeEEEecc
Confidence 356789999999999999999999998876 4799988744
No 263
>PRK04148 hypothetical protein; Provisional
Probab=89.89 E-value=0.65 Score=44.86 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=30.7
Q ss_pred CCCEEEeecCCcch-HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 78 pg~~VLDmCAAPGs-KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
.+.+|||+++|.|. .+..|+++ ...|+|+|+++.++..+++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-----------G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-----------GFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-----------CCEEEEEECCHHHHHHHHH
Confidence 46789999999996 44444432 3589999999998776544
No 264
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.63 E-value=0.55 Score=51.26 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=52.1
Q ss_pred EEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCC
Q 004787 82 VLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSA 161 (730)
Q Consensus 82 VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~ 161 (730)
|+|+|||-|+.+.-+-++ +--.|.|+|++...+...++|.. + .+...|...+..
T Consensus 1 vidLF~G~GG~~~Gl~~a----------G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~---------- 54 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----------GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISP---------- 54 (315)
T ss_pred CEEEecCccHHHHHHHHc----------CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhh----------
Confidence 689999999998776432 12467899999999999887642 2 223344443211
Q ss_pred CccccccccccccccccEEEecCCCCCCCcccc
Q 004787 162 SDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 162 ~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
.....+|.++.-+||.+--...+
T Consensus 55 ----------~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 55 ----------SDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred ----------hhCCCcCEEEecCCCcccchhcc
Confidence 00135899999999998765433
No 265
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.07 E-value=0.4 Score=49.45 Aligned_cols=133 Identities=16% Similarity=0.145 Sum_probs=63.0
Q ss_pred CcEEEccccccchh--hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 58 GNITRQEAVSMVPP--LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 58 G~i~~Qd~~Smlp~--llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
|....|-+--|+.. ++-+++|. .|+.++.+-||-+...|.++..- .+.|.|+++|++...+.........+
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd-~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~~~~a~e~hp~- 83 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPD-LIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPHNRKAIESHPM- 83 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--S-EEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT--S-GGGG----
T ss_pred CeehhcCHHHHHHHHHHHHHhCCC-eEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchhchHHHhhccc-
Confidence 44444444333332 22245554 99999999999999888877642 14799999999766554322222122
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
.+.|.+..+|......+. +.. ..........|+.|.--+ +.-..
T Consensus 84 ~~rI~~i~Gds~d~~~~~--~v~-----------~~~~~~~~vlVilDs~H~-----------------------~~hvl 127 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVD--QVR-----------ELASPPHPVLVILDSSHT-----------------------HEHVL 127 (206)
T ss_dssp -TTEEEEES-SSSTHHHH--TSG-----------SS----SSEEEEESS---------------------------SSHH
T ss_pred cCceEEEECCCCCHHHHH--HHH-----------HhhccCCceEEEECCCcc-----------------------HHHHH
Confidence 266888887765421110 000 000112344677776422 22234
Q ss_pred HHHHHHHhhccCCCEEEE
Q 004787 216 QIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVY 233 (730)
+.|..-..++.+|+++|-
T Consensus 128 ~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 128 AELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp HHHHHHHHT--TT-EEEE
T ss_pred HHHHHhCccCCCCCEEEE
Confidence 566777889999999874
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=88.96 E-value=0.7 Score=49.62 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
.+|+.|||-|+|+|+. +.+|+.++ -.-+++|++++-+.+++.++.
T Consensus 207 ~~GD~VLDPF~GSGTT-~~AA~~lg----------R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTT-GAVAKASG----------RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHH-HHHHHHcC----------CCEEEEeCCHHHHHHHHHHHH
Confidence 6899999999999974 44455543 478999999999999988764
No 267
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.76 E-value=1.7 Score=48.10 Aligned_cols=103 Identities=19% Similarity=0.182 Sum_probs=63.7
Q ss_pred CCCCCEEEeecCCcchH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsK-T~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
..++.+|+=+||||=|. +++++..++ ...|+++|.++.|++++++. .+...+ .+........ .+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~G---------a~~Viv~d~~~~Rl~~A~~~---~g~~~~--~~~~~~~~~~-~~ 230 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLG---------ASVVIVVDRSPERLELAKEA---GGADVV--VNPSEDDAGA-EI 230 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHHHHHh---CCCeEe--ecCccccHHH-HH
Confidence 45566999999999555 455655543 47999999999999977542 333211 1111100000 00
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
........||.|+- |||.. ..+..|++++++||++++.
T Consensus 231 --------------~~~t~g~g~D~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 231 --------------LELTGGRGADVVIE---AVGSP-------------------------PALDQALEALRPGGTVVVV 268 (350)
T ss_pred --------------HHHhCCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEEE
Confidence 00011246999986 77722 1577889999999999986
Q ss_pred c
Q 004787 235 T 235 (730)
Q Consensus 235 T 235 (730)
-
T Consensus 269 G 269 (350)
T COG1063 269 G 269 (350)
T ss_pred e
Confidence 3
No 268
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.58 E-value=2.9 Score=44.94 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCEEEeecCCcch----HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 79 DHFVLDMCAAPGS----KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 79 g~~VLDmCAAPGs----KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
--+||-++|++|= .+..|++.++.. ....-.|+|.|+|.+-+..++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~----~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKL----AGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccc----cCCceEEEEEECCHHHHHHHhc
Confidence 4599999999994 444445554320 0124689999999998877643
No 269
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.89 E-value=1.6 Score=40.12 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccc
Q 004787 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIES 168 (730)
Q Consensus 89 PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~ 168 (730)
-|..++|+|..++ ..|++.|.+..|..++ +++|...+ .+.....+.. .+.
T Consensus 2 vG~~a~q~ak~~G----------~~vi~~~~~~~k~~~~----~~~Ga~~~--~~~~~~~~~~-~i~------------- 51 (130)
T PF00107_consen 2 VGLMAIQLAKAMG----------AKVIATDRSEEKLELA----KELGADHV--IDYSDDDFVE-QIR------------- 51 (130)
T ss_dssp HHHHHHHHHHHTT----------SEEEEEESSHHHHHHH----HHTTESEE--EETTTSSHHH-HHH-------------
T ss_pred hHHHHHHHHHHcC----------CEEEEEECCHHHHHHH----Hhhccccc--cccccccccc-ccc-------------
Confidence 4778899988753 6899999999998765 45774432 3222221110 000
Q ss_pred ccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 169 ESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 169 ~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.......+|.|+- |+|.+ ..+..++++|++||++|....
T Consensus 52 -~~~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 52 -ELTGGRGVDVVID---CVGSG-------------------------DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -HHTTTSSEEEEEE---SSSSH-------------------------HHHHHHHHHEEEEEEEEEESS
T ss_pred -cccccccceEEEE---ecCcH-------------------------HHHHHHHHHhccCCEEEEEEc
Confidence 0011147999986 66644 256778999999999987533
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=87.86 E-value=0.72 Score=53.14 Aligned_cols=102 Identities=24% Similarity=0.232 Sum_probs=59.3
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEE---EeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA---NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvA---nD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
-.+||++||.|++++.|++. .-.++. +|..+.-.+.+ .+-|++.+.-+. -.+.+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----------~V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~-~s~rLP------ 176 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----------NVTTMSFAPNDEHEAQVQFA----LERGVPAMIGVL-GSQRLP------ 176 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----------CceEEEcccccCCchhhhhh----hhcCcchhhhhh-cccccc------
Confidence 47999999999999998764 122222 23333222222 223444322111 111222
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.....||.|=| |.-.. .|.+..+. +|...-++|+|||.+|+|.-
T Consensus 177 ---------------fp~~~fDmvHc----src~i---------~W~~~~g~--------~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 177 ---------------FPSNAFDMVHC----SRCLI---------PWHPNDGF--------LLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ---------------CCccchhhhhc----ccccc---------cchhcccc--------eeehhhhhhccCceEEecCC
Confidence 23367888864 44442 46555532 56777889999999999977
Q ss_pred CCC
Q 004787 237 SMN 239 (730)
Q Consensus 237 Sl~ 239 (730)
-++
T Consensus 221 pv~ 223 (506)
T PF03141_consen 221 PVY 223 (506)
T ss_pred ccc
Confidence 766
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=87.55 E-value=0.94 Score=45.45 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=30.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
-.+|+.|||-+||+|+ |+.+|..|+ -.-+++|+++.-+.+++
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~----------R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG----------RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT-----------EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC----------CeEEEEeCCHHHHHHhc
Confidence 3789999999999997 455555553 46899999999998765
No 272
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=87.51 E-value=1.3 Score=45.97 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=59.9
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.-.+....++..|-||+||-+- ||..+.+ .-.|...|+-. .|-.||..|..+
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~----la~~~~~--------~~~V~SfDLva---------------~n~~Vtacdia~ 115 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAK----LAKAVPN--------KHKVHSFDLVA---------------PNPRVTACDIAN 115 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-H----HHHH--S-----------EEEEESS----------------SSTTEEES-TTS
T ss_pred HHHHHHhcCCCEEEEECCCchHH----HHHhccc--------CceEEEeeccC---------------CCCCEEEecCcc
Confidence 33334444456799999999865 4455432 24699999732 222466677766
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCC-CCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC-SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC-SGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.|- ....+|.+++ | |=.|| .| ...|.+|.+.||+
T Consensus 116 vPL---------------------~~~svDv~Vf---cLSLMGT---------n~------------~~fi~EA~RvLK~ 150 (219)
T PF05148_consen 116 VPL---------------------EDESVDVAVF---CLSLMGT---------NW------------PDFIREANRVLKP 150 (219)
T ss_dssp -S-----------------------TT-EEEEEE---ES---SS----------H------------HHHHHHHHHHEEE
T ss_pred CcC---------------------CCCceeEEEE---EhhhhCC---------Cc------------HHHHHHHHheecc
Confidence 552 2367898876 3 22344 12 4579999999999
Q ss_pred CCEEEEE-cCCCCCCCcHHHHHHHHHHCC
Q 004787 228 GGRIVYS-TCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 228 GGrLVYS-TCSl~p~ENEaVV~~~L~~~~ 255 (730)
||.|... .+|= .+|-..-...+++.|
T Consensus 151 ~G~L~IAEV~SR--f~~~~~F~~~~~~~G 177 (219)
T PF05148_consen 151 GGILKIAEVKSR--FENVKQFIKALKKLG 177 (219)
T ss_dssp EEEEEEEEEGGG---S-HHHHHHHHHCTT
T ss_pred CcEEEEEEeccc--CcCHHHHHHHHHHCC
Confidence 9988765 3332 245554555566554
No 273
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=86.60 E-value=0.9 Score=43.23 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
..||.|++|+- .-++||++|.. .++....+++++||+++-.||+ ..|...|...
T Consensus 49 ~~~Da~ylDgF-----sP~~nPelWs~--------------e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-----SPAKNPELWSE--------------ELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGGSSH--------------HHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-----CCcCCcccCCH--------------HHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 68999999962 13689998764 5888889999999988755553 4689999998
Q ss_pred CCc
Q 004787 255 EGS 257 (730)
Q Consensus 255 ~~~ 257 (730)
|-.
T Consensus 103 GF~ 105 (124)
T PF05430_consen 103 GFE 105 (124)
T ss_dssp TEE
T ss_pred CCE
Confidence 733
No 274
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.00 E-value=3.5 Score=45.10 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=33.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||=.++ |+....++++.... +...|++.|.+..|...+. ++|..
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 35789999998854 44433333333221 1225999999999988773 46753
No 275
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=85.90 E-value=2.8 Score=43.35 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=71.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEecccccC-C
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-------TANLIVTNHEAQHF-P 150 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-------~~nv~vt~~Da~~f-p 150 (730)
.-.+.|++||=|+....|+.+ .|.-.|++.++.-+-+.-.+..+..++ ..|+.+....+..| |
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~---------fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPK---------FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP 131 (249)
T ss_pred cceEEeeccCccchhhhcccc---------CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence 346889999999988887665 467899999998877777777766554 45666666655543 2
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
++ +..+.-..++. +-.+|..|++-..... .+..++.+-.=+|+.||.
T Consensus 132 n~-------------------f~kgqLskmff---------~fpdpHfk~~khk~ri-----i~~~l~~eyay~l~~gg~ 178 (249)
T KOG3115|consen 132 NF-------------------FEKGQLSKMFF---------LFPDPHFKARKHKWRI-----ITSTLLSEYAYVLREGGI 178 (249)
T ss_pred ch-------------------hhhccccccee---------ecCChhHhhhhcccee-----echhHHHHHHhhhhcCce
Confidence 21 11122222222 1224444443222221 234567777778999998
Q ss_pred EEEEcC
Q 004787 231 IVYSTC 236 (730)
Q Consensus 231 LVYSTC 236 (730)
+.++|=
T Consensus 179 ~ytitD 184 (249)
T KOG3115|consen 179 LYTITD 184 (249)
T ss_pred EEEEee
Confidence 888763
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.46 E-value=8.9 Score=41.71 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=33.0
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
...+|++||=.+| |+....+++++... ....|++.|.+++|+.+++ .+|...
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 4567999998765 45444443333321 1247999999999987664 477643
No 277
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.34 E-value=2.6 Score=46.24 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
..+|+|+|||-|+...-+-++ +--.+.|+|+++..+...++|... ..+...|...+..-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----------gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~------ 61 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----------GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGE------ 61 (328)
T ss_pred CceEEeeccCCchHHHHHHhc----------CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChh------
Confidence 358999999999998665332 124799999999999999887542 23344444432210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~ 195 (730)
......+|.|+.-+||=+.-...++
T Consensus 62 ------------~~~~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 62 ------------ALRKSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred ------------hccccCCCEEEeCCCCcchhhcCcc
Confidence 0111179999999999887665444
No 278
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.98 E-value=4.2 Score=44.44 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=30.9
Q ss_pred CCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeC---CHHHHHHHHHHHHHcCCC
Q 004787 76 VQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDL---DVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 76 ~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~---d~~Rl~~L~~nlkRlg~~ 137 (730)
+++|++||=.++|+ |..++|+|..+ ...|++++. +++|..++ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~----------G~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR----------GFEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 56899999887643 33345555543 236888887 67887755 457764
No 279
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=84.78 E-value=0.0018 Score=69.61 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=40.5
Q ss_pred EEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcH
Q 004787 180 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE 244 (730)
Q Consensus 180 VL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENE 244 (730)
||++.+|++.+++|.|+..|..|........+.+|.+.+..+...+..++...|++|++.+.++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G 65 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNG 65 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTT
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCC
Confidence 46788999999999999988887655544444455444444444444455666778887665553
No 280
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=84.69 E-value=6.2 Score=43.05 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=32.3
Q ss_pred CCCCCCEEEeecCCcchH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsK-T~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.+++|++||=.+||+=|. ++|+|..+.+ ...|+++|.++.|+++++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g--------~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYP--------ESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcC--------CCcEEEEeCcHhHHHHHh
Confidence 468899999988765443 3455554321 247999999999988764
No 281
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.33 E-value=7.7 Score=42.13 Aligned_cols=51 Identities=12% Similarity=-0.071 Sum_probs=33.8
Q ss_pred cCCCCCCEEEeecCCcch-HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.++|+-+ .++|+|..+ ...|++.+.+.+|..++ +.+|...
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~----------G~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ----------GATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC----------CCeEEEEeCChHHHHHH----HHhCCce
Confidence 467899999988764322 234444442 23699999999987654 4577653
No 282
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.12 E-value=21 Score=37.51 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=89.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
+.+.+++|+||=-|.-...|... .+..+++|.|+++.-+..++.++++.+. ..+.+..+|+ ++.+..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~---------~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~- 82 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN---------NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLEL- 82 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc---------CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCc-
Confidence 44666999999998887777553 2467999999999999999999998875 4577777776 444321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...+|.|.. .|.|- .+-..||.++...|+.=-++|
T Consensus 83 ------------------~d~~d~ivI----AGMGG--------------------~lI~~ILee~~~~l~~~~rlI--- 117 (226)
T COG2384 83 ------------------EDEIDVIVI----AGMGG--------------------TLIREILEEGKEKLKGVERLI--- 117 (226)
T ss_pred ------------------cCCcCEEEE----eCCcH--------------------HHHHHHHHHhhhhhcCcceEE---
Confidence 135788876 35552 345789999999887545676
Q ss_pred CCCCCCCcHHHHHHHHHHCC
Q 004787 236 CSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~ 255 (730)
+.|.-++.-+.++|..++
T Consensus 118 --LQPn~~~~~LR~~L~~~~ 135 (226)
T COG2384 118 --LQPNIHTYELREWLSANS 135 (226)
T ss_pred --ECCCCCHHHHHHHHHhCC
Confidence 467789999999998865
No 283
>PRK13699 putative methylase; Provisional
Probab=84.00 E-value=2 Score=44.83 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=37.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
-.+|+.|||-++|+|+... .|..+ .-..+++|+++.-+..+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~-aa~~~----------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCV-AALQS----------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHH-HHHHc----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 4689999999999998544 34443 246889999999998888877654
No 284
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.91 E-value=2.5 Score=42.12 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=40.1
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
...||+|++|||- -+.+. +.+....+-.++|+++.|+.+| +.++|..+.+.|
T Consensus 84 ~~~~d~vv~DPPF-------l~~ec---------------~~k~a~ti~~L~k~~~kii~~T----g~~~~~~~~~ll-- 135 (162)
T PF10237_consen 84 KGKFDVVVIDPPF-------LSEEC---------------LTKTAETIRLLLKPGGKIILCT----GEEMEELIKKLL-- 135 (162)
T ss_pred CCCceEEEECCCC-------CCHHH---------------HHHHHHHHHHHhCccceEEEec----HHHHHHHHHHHh--
Confidence 3689999999994 11222 2334444445668899999865 567999999888
Q ss_pred CCCcEEEEecC
Q 004787 254 CEGSVELVDVS 264 (730)
Q Consensus 254 ~~~~velvd~s 264 (730)
.++..+..
T Consensus 136 ---~~~~~~f~ 143 (162)
T PF10237_consen 136 ---GLRMCDFQ 143 (162)
T ss_pred ---CeeEEeEE
Confidence 35555543
No 285
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.89 E-value=1.9 Score=46.10 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=48.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.||+.-.|++|+|||+|-||... .-+|+|+|--.=+..+ +....+.-...|+..|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr-----------~m~V~aVDng~ma~sL-------~dtg~v~h~r~DGfk~~P---- 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR-----------NMRVYAVDNGPMAQSL-------MDTGQVTHLREDGFKFRP---- 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc-----------ceEEEEeccchhhhhh-------hcccceeeeeccCccccc----
Confidence 468999999999999999999765 4689999974433322 223334444556655432
Q ss_pred CCCCCCCccccccccccccccccEEEecC
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDV 184 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~Dv 184 (730)
.....|=.+||.
T Consensus 267 -----------------~r~~idWmVCDm 278 (358)
T COG2933 267 -----------------TRSNIDWMVCDM 278 (358)
T ss_pred -----------------CCCCCceEEeeh
Confidence 135688899986
No 286
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.75 E-value=4.3 Score=44.71 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=33.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ |+....+++++... ....|++.|.++.|+.+++ .+|..
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~ 238 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAA------GASQVVAVDLNEDKLALAR----ELGAT 238 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHH----HcCCc
Confidence 45789999998865 44433333333221 1236999999999988664 46654
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=82.19 E-value=1.9 Score=46.39 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=34.6
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
.+||.|++|||.-...... + ....|. ...........+..+.++||+||.|+.. |+.
T Consensus 26 ~siDlIitDPPY~~~~~~~-~--~~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 26 ESVDLIFADPPYNIGKNFD-G--LIEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred CcccEEEECCCcccccccc-c--cccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 6799999999984311110 0 001121 1112223467889999999999998874 554
No 288
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=81.93 E-value=7.6 Score=41.65 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=36.4
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
.+|||++||||.-+..+.+.+.. -..++++|.++..+.+.+..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~--------~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPS--------LKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcC--------ceeeeeecCCHHHHHHHHHHHhcc
Confidence 38999999999866666666542 367999999999998877766543
No 289
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.65 E-value=3.2 Score=44.71 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=91.2
Q ss_pred ccccCcEEEccccccchhhccCCC---CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 54 ENEIGNITRQEAVSMVPPLFLDVQ---PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 54 ~~~~G~i~~Qd~~Smlp~llLd~~---pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
.+..|.++.--.+|.+. ++.-+ .|..|+=|+ --- .+.||-+|.+- .-+|..+|+|..-+....+-
T Consensus 127 ~yDQgfvTpEttv~Rv~--lm~~RGDL~gK~I~vvG--DDD-Ltsia~aLt~m-------pk~iaVvDIDERli~fi~k~ 194 (354)
T COG1568 127 QYDQGFVTPETTVSRVA--LMYSRGDLEGKEIFVVG--DDD-LTSIALALTGM-------PKRIAVVDIDERLIKFIEKV 194 (354)
T ss_pred hcccccccccceeeeee--eeccccCcCCCeEEEEc--Cch-hhHHHHHhcCC-------CceEEEEechHHHHHHHHHH
Confidence 44556665555555544 33221 356788776 222 33455555442 35899999999999999999
Q ss_pred HHHcCCCceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004787 131 TKRMCTANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (730)
Q Consensus 131 lkRlg~~nv~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~ 209 (730)
++.+|..|+.+..+|.++ +|. .-..+||.++-|||-+-.|.
T Consensus 195 aee~g~~~ie~~~~Dlr~plpe--------------------~~~~kFDvfiTDPpeTi~al------------------ 236 (354)
T COG1568 195 AEELGYNNIEAFVFDLRNPLPE--------------------DLKRKFDVFITDPPETIKAL------------------ 236 (354)
T ss_pred HHHhCccchhheeehhcccChH--------------------HHHhhCCeeecCchhhHHHH------------------
Confidence 999999999999898876 221 11378999999999433331
Q ss_pred hHHHHHHHHHHHHhhccCCCEEE--EEcCCCCCCCcHHHHHH-HHHHC
Q 004787 210 LHSLQVQIAMRGISLLKVGGRIV--YSTCSMNPVENEAVVAE-ILRKC 254 (730)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGGrLV--YSTCSl~p~ENEaVV~~-~L~~~ 254 (730)
+..|-|++..||--|.-- |-|-+-++..-=--++. ++...
T Consensus 237 -----k~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~ 279 (354)
T COG1568 237 -----KLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEM 279 (354)
T ss_pred -----HHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhc
Confidence 346888899998664332 33444444433344455 44443
No 290
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.06 E-value=5.2 Score=46.29 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=56.3
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
...+++|+|||-||.+.-+-.. + --.|.|+|++...+.+..+|.. +.+...+.+.|...+....+...
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a-G---------~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~ 154 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI-G---------GQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGV 154 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc-C---------CEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCcccccccc
Confidence 3569999999999998877322 1 2378999999999998887741 11223334455444321100000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
.. .+...........+|.++.-+||-+--..
T Consensus 155 ~~----~~~~~~~~~~~p~~DvL~gGpPCQ~FS~A 185 (467)
T PRK10458 155 SD----EEAAEHIRQHIPDHDVLLAGFPCQPFSLA 185 (467)
T ss_pred ch----hhhhhhhhccCCCCCEEEEcCCCCccchh
Confidence 00 00000000011358999999999886543
No 291
>PHA01634 hypothetical protein
Probab=81.04 E-value=6.8 Score=37.84 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=39.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
.+.+|+|++|+-|+-++..+- . +...|+|++.+++....++++++-+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l--~--------GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL--R--------GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhh--c--------CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 478999999999998777643 2 25799999999999999999887653
No 292
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=80.56 E-value=10 Score=40.27 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.++++++||..++|+ |.-++++|..+ ...|++.+.+..+...++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~----------G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM----------GAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc----------CCEEEEEcCCHHHHHHHH
Confidence 478899999964321 34444444443 246999999998887663
No 293
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=79.74 E-value=3.8 Score=42.79 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=35.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
..-.++|-|||.|...+-+ -+||.. .=..|+|-|+|.+.+.+++.|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVl-GLLh~~------~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVL-GLLHRR------RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHH-HHHTGG------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHH-HHhhhH------HHHhHhcccCCHHHHHHHHHhhh
Confidence 3458999999999987665 567753 13679999999999998888875
No 294
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=76.27 E-value=1.1 Score=46.35 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=29.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.+++||++||-|-.|.+++-.. -.|+|-+.|..+...|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-----------eevyATElS~tMr~rL 150 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-----------EEVYATELSWTMRDRL 150 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-----------HHHHHHHhhHHHHHHH
Confidence 4799999999999999886543 3588888876655543
No 295
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.10 E-value=15 Score=40.06 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.6
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=++||+ |.-++++|..+ ...|++.|.++.|+..+. .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~----------G~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM----------GAAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEEcCCHHHHHHHH----HhCCc
Confidence 4578899999998744 44445555543 246999999999987663 45653
No 296
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.62 E-value=15 Score=39.79 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=31.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+| |+....++++.... ....|++.+.+..|...+ +.+|..
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~----~~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVAL------GAKSVTAIDINSEKLALA----KSLGAM 207 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 35678999998854 44433333333221 123588999999998865 346653
No 297
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.83 E-value=13 Score=39.19 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+.+|++||=+++ |+....+++++... ....|++.|.+.+|..+++ .+|..
T Consensus 117 ~~~~g~~VlV~G~--G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~ 167 (280)
T TIGR03366 117 GDLKGRRVLVVGA--GMLGLTAAAAAAAA------GAARVVAADPSPDRRELAL----SFGAT 167 (280)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCCc
Confidence 4568999998865 44443333333221 1235889999999987654 46654
No 298
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=74.44 E-value=10 Score=42.08 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=61.7
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
...+|+++|-|..+-+++... | .|-+++.|..-+-....++. .| +.-+-+|... .
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---------p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq--~-------- 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---------P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQ--D-------- 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---------C--CCceeecCHHHHHhhhhhhc-CC---cceecccccc--c--------
Confidence 789999999999999987732 2 36666777666555544443 33 2222333221 1
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
-.+-|.|++ ..+...|+-++- .+||+|+++.|+|||.|+-.-|=+
T Consensus 234 --------------~P~~daI~m-------------kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 234 --------------TPKGDAIWM-------------KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred --------------CCCcCeEEE-------------EeecccCChHHH-------HHHHHHHHHhCCCCCEEEEEeccC
Confidence 022345554 112234544432 679999999999999999876533
No 299
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.77 E-value=12 Score=40.40 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=33.7
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+.+++|++||=.++ |+....+++++... +...|++.+.+..|...++ .+|..
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~------G~~~vi~~~~~~~~~~~~~----~~ga~ 210 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARAL------GAEDVIGVDPSPERLELAK----ALGAD 210 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HhCCC
Confidence 46788999998853 56555544444321 1224999999999987653 46654
No 300
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.67 E-value=12 Score=41.31 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=33.9
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+||+ |.-++|+|..++ ...|++.|.+..|+.++. ++|..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G---------~~~Vi~~~~~~~~~~~a~----~~Ga~ 232 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK---------ASRIIAIDINPAKFELAK----KLGAT 232 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH----HhCCC
Confidence 4578999999886532 223444554432 137999999999988763 46764
No 301
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=73.54 E-value=29 Score=40.80 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=37.0
Q ss_pred cCCCCCCEEEeecCCcchH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsK-T~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
++..|+++|+=++||+=|. ++++|..++ ..|+++|.++.|++.++ .+|..
T Consensus 160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~lG----------A~V~a~D~~~~rle~ae----slGA~ 210 (509)
T PRK09424 160 AGKVPPAKVLVIGAGVAGLAAIGAAGSLG----------AIVRAFDTRPEVAEQVE----SMGAE 210 (509)
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCe
Confidence 3467899999999998665 445555542 37999999999988554 46765
No 302
>PLN02740 Alcohol dehydrogenase-like
Probab=73.12 E-value=17 Score=40.36 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=35.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+| |+....+++++... +...|+++|.+..|+++++ .+|...
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~------G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARAR------GASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHC------CCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 46789999998864 55555444444321 1236999999999988774 467643
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=72.46 E-value=14 Score=39.72 Aligned_cols=42 Identities=10% Similarity=-0.126 Sum_probs=25.5
Q ss_pred CCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.++++||=++||+ |..++|+|..++ ...|++.|.+..|+..+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G---------~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG---------GSPPAVWETNPRRRDGA 185 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHhh
Confidence 3577888775432 334455555432 23577889988887654
No 304
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=70.35 E-value=15 Score=41.22 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=33.6
Q ss_pred cCCCCCCEEEeecC-C-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
..+++|++||=.++ | -|.-++|+|..++. ....|++.|.+..|+..+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~-------g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPI-------GPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhccc-------CCceEEEEcCCHHHHHHHHHh
Confidence 45788999887753 3 34445566655421 124799999999999887663
No 305
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=69.91 E-value=15 Score=40.26 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=36.0
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+|+ -|..++|+|..++ ..|++.+.+..+...++. .+|...
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G----------~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG----------CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 357899999887762 4556677776642 469999999888776542 367643
No 306
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.40 E-value=24 Score=37.81 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=33.4
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+|+ -|..++|+|..+ ...|++.+.+.++...+ +.+|..
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~----------G~~Vi~~~~s~~~~~~~----~~lGa~ 185 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK----------GCKVVGAAGSDEKVAYL----KKLGFD 185 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH----HHcCCC
Confidence 457899999977653 344455555543 24689999888887765 346764
No 307
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.94 E-value=21 Score=39.47 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=44.3
Q ss_pred CCCCCCEEEeecC-CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 75 DVQPDHFVLDMCA-APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 75 d~~pg~~VLDmCA-APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~-~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
++.||.+|-=.++ |-|+.+.|+|.+|+ -+|+++|.+. +|-+. +++||...++++..|...
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG----------~rV~vis~~~~kkeea----~~~LGAd~fv~~~~d~d~ 239 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG----------MRVTVISTSSKKKEEA----IKSLGADVFVDSTEDPDI 239 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC----------cEEEEEeCCchhHHHH----HHhcCcceeEEecCCHHH
Confidence 4678987766655 47999999999985 4899999987 55443 567898887777655444
No 308
>PLN02827 Alcohol dehydrogenase-like
Probab=66.82 E-value=25 Score=39.05 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=33.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||=.++ |+....++++.... ....|++.|.+..|..++ +.+|..
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a----~~lGa~ 240 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLR------GASQIIGVDINPEKAEKA----KTFGVT 240 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHH----HHcCCc
Confidence 45788999998854 55544444443321 123689999999888765 456764
No 309
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=63.64 E-value=48 Score=34.97 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
..|.+||.++=|-|-..+.+-+. +--.-+-++.++.-++.++...=+ .-.|+++..+-=++..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~----------~p~~H~IiE~hp~V~krmr~~gw~-ek~nViil~g~WeDvl------ 162 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA----------PPDEHWIIEAHPDVLKRMRDWGWR-EKENVIILEGRWEDVL------ 162 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc----------CCcceEEEecCHHHHHHHHhcccc-cccceEEEecchHhhh------
Confidence 56889999999998776665433 223445567788777766554322 1246666654222210
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.......||-|+-|.= + ....|+| ..-.++.+||||+|.+-| |
T Consensus 163 -------------~~L~d~~FDGI~yDTy----~--e~yEdl~----------------~~hqh~~rLLkP~gv~Sy--f 205 (271)
T KOG1709|consen 163 -------------NTLPDKHFDGIYYDTY----S--ELYEDLR----------------HFHQHVVRLLKPEGVFSY--F 205 (271)
T ss_pred -------------ccccccCcceeEeech----h--hHHHHHH----------------HHHHHHhhhcCCCceEEE--e
Confidence 0112356999999862 0 0112222 233488999999997766 5
Q ss_pred CCCCCCc
Q 004787 237 SMNPVEN 243 (730)
Q Consensus 237 Sl~p~EN 243 (730)
-..-..|
T Consensus 206 Ng~~~~~ 212 (271)
T KOG1709|consen 206 NGLGADN 212 (271)
T ss_pred cCcccch
Confidence 5544443
No 310
>PRK13699 putative methylase; Provisional
Probab=62.81 E-value=27 Score=36.47 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=40.3
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
..++|.|+.|||.- .|.-.+.-.. +. ...........+..+.++||+||.++ +-|+.+. -..+..++++
T Consensus 18 d~SVDLIiTDPPY~-i~~~~~~~~~---~~---~~~~~ew~~~~l~E~~RVLKpgg~l~-if~~~~~---~~~~~~al~~ 86 (227)
T PRK13699 18 DNAVDFILTDPPYL-VGFRDRQGRT---IA---GDKTDEWLQPACNEMYRVLKKDALMV-SFYGWNR---VDRFMAAWKN 86 (227)
T ss_pred ccccceEEeCCCcc-cccccCCCcc---cc---cccHHHHHHHHHHHHHHHcCCCCEEE-EEecccc---HHHHHHHHHH
Confidence 47899999999984 2211000000 00 11122334578899999999988665 4577643 2334455565
Q ss_pred CC
Q 004787 254 CE 255 (730)
Q Consensus 254 ~~ 255 (730)
.|
T Consensus 87 ~G 88 (227)
T PRK13699 87 AG 88 (227)
T ss_pred CC
Confidence 54
No 311
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=62.64 E-value=13 Score=37.08 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=40.8
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
+|.|+.|||.-..-.- .....+.. ..............+..+.++||+||.++.. |+-..... .++..+++..+
T Consensus 1 VdliitDPPY~~~~~~-~~~~~~~~--~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g- 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYFDYGD--NKNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFG- 74 (231)
T ss_dssp EEEEEE---TSSSCS------CSCH--CCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHT-
T ss_pred CCEEEECCCCCCCCCc-chhhhccC--CCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhh-
Confidence 4889999996543320 00000000 0112233445677899999999999987653 55543333 35566666655
Q ss_pred cEEEEe
Q 004787 257 SVELVD 262 (730)
Q Consensus 257 ~velvd 262 (730)
.+.+++
T Consensus 75 ~~~~~~ 80 (231)
T PF01555_consen 75 GFFLRN 80 (231)
T ss_dssp T-EEEE
T ss_pred hhheec
Confidence 455544
No 312
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=62.61 E-value=39 Score=37.12 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=30.0
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
..+++|++||=.++|+ |.-++++|..++ ...|++.|.+..|...+.
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G---------~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG---------CTTIIAVDIVDSRLELAK 228 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHH
Confidence 4578899999885422 333444444432 246999999999887654
No 313
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=61.22 E-value=8.2 Score=35.31 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=53.2
Q ss_pred CccEEEEceEeeEEEecCCCCCCcccceeeccChhhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcC
Q 004787 556 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 635 (730)
Q Consensus 556 ~~lkii~~GvK~F~rq~~~~~~~~~c~~Ri~~eGl~~l~p~i~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l 635 (730)
++|||+..|+++=+... =+|+.++.++..+.+.-.+++|.++.++.+..|..+.+..+. -
T Consensus 11 ~~l~v~r~Gl~lg~~~k--------~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~------------~ 70 (102)
T PF13636_consen 11 PGLKVLRAGLYLGEIKK--------NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP------------P 70 (102)
T ss_dssp TTSEECECSEEEEEEET--------TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-------------
T ss_pred CCCeEEecCcEeeeEeC--------CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC------------C
Confidence 57999999999988752 289999999999999988999999999999999876665432 1
Q ss_pred CCceEEEEEcCC
Q 004787 636 MMGCCVIVLSGE 647 (730)
Q Consensus 636 ~~G~~vl~~~~~ 647 (730)
..|=++|.+++.
T Consensus 71 ~~G~vlv~~~g~ 82 (102)
T PF13636_consen 71 DKGWVLVTYEGF 82 (102)
T ss_dssp -EEEEEEEECCC
T ss_pred CCcEEEEEECCE
Confidence 358788877753
No 314
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=60.89 E-value=4.9 Score=37.62 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=17.1
Q ss_pred HHHHHHHHhhccCCCEEEE
Q 004787 215 VQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVY 233 (730)
++++++..++|+|||++|.
T Consensus 24 ~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEE
Confidence 6789999999999999984
No 315
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=60.52 E-value=53 Score=36.03 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=+++ |+....++++.... +...|+++|.+..|...+. .+|..
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~------G~~~Vi~~~~~~~~~~~~~----~~ga~ 231 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIA------GASRIIGVDINEDKFEKAK----EFGAT 231 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 35789999998843 55544443333221 1227999999999988763 46654
No 316
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=59.56 E-value=37 Score=36.43 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=28.4
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
..+++|++||-.++|. |.-++++|..++ .+.|++++.+..+...++
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g---------~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG---------AARIIAVDSNPERLDLAK 209 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEeCCHHHHHHHH
Confidence 4567899999964321 333444444421 247888888888876554
No 317
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.24 E-value=63 Score=32.83 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=40.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+|| +.-|+|+...+++..|... .-.|++.+.+...+..+...++..+ .++.+...|..+
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKE-------GAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 34566 4445788889999887652 3479999999888877766665544 345555555543
No 318
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=59.19 E-value=19 Score=40.54 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=71.6
Q ss_pred cchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccc
Q 004787 68 MVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEA 146 (730)
Q Consensus 68 mlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da 146 (730)
.+..+....+|++.++|+.++-|+-+..++.. . ...++++|.+.-.+.+........++.+ ..+..+|.
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~---------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~ 169 (364)
T KOG1269|consen 100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-K---------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF 169 (364)
T ss_pred chHHHhhcCcccccccccCcCcCchhHHHHHh-c---------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh
Confidence 34455567789999999999999998888665 2 3568888888887777666655554433 22234444
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEE-ecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVL-CDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL-~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
.+.| +....||.|- +|+=|-. |+. ...+.+.++.+
T Consensus 170 ~~~~---------------------fedn~fd~v~~ld~~~~~-------~~~----------------~~~y~Ei~rv~ 205 (364)
T KOG1269|consen 170 GKMP---------------------FEDNTFDGVRFLEVVCHA-------PDL----------------EKVYAEIYRVL 205 (364)
T ss_pred hcCC---------------------CCccccCcEEEEeecccC-------CcH----------------HHHHHHHhccc
Confidence 3332 2336788775 3443321 111 23567778889
Q ss_pred cCCCEEE
Q 004787 226 KVGGRIV 232 (730)
Q Consensus 226 KpGGrLV 232 (730)
+|||..+
T Consensus 206 kpGG~~i 212 (364)
T KOG1269|consen 206 KPGGLFI 212 (364)
T ss_pred CCCceEE
Confidence 9999875
No 319
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.03 E-value=75 Score=33.69 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=34.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|.+||=.+ .|+....+++++... ...|++.+.+.++...++. +|..
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~-------G~~vi~~~~~~~~~~~~~~----~g~~ 201 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALT-------GPDVVLVGRHSEKLALARR----LGVE 201 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHHHH----cCCc
Confidence 4568899998873 466665555555431 2358999999888877654 5654
No 320
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=58.63 E-value=44 Score=35.94 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCCCC--CEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 75 DVQPD--HFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 75 d~~pg--~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.+++| ++||=.+| +-|..+.|+|..++ ...|++.+.+.+|...+.. .+|...
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G---------~~~Vi~~~~s~~~~~~~~~---~lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG---------CSRVVGICGSDEKCQLLKS---ELGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHH---hcCCcE
Confidence 46666 88987765 34445566665532 1269999999888876654 367644
No 321
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=57.85 E-value=72 Score=32.20 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=33.8
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC---cEEEEec
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG---SVELVDV 263 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~---~velvd~ 263 (730)
..+....+.|++|-.+|+ -+|+.|--.+.++..+|++.++ .|.+.-.
T Consensus 101 ~a~~~i~~~l~~~~lvV~-~STvppGtt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 101 SAIESIAPVLRPGDLVVI-ESTVPPGTTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp HHHHHHHHHHCSCEEEEE-SSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred HHHHHHHHHHhhcceEEE-ccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence 456666677888555555 6889999999999999998764 4566554
No 322
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=56.97 E-value=61 Score=35.60 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.8
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ |+....+++++... +...|++.|.+..|+..++ .+|..
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~------G~~~vi~~~~~~~~~~~~~----~lGa~ 233 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAA------GASRIIGIDINPDKFELAK----KFGAT 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999998854 55544444443321 1237999999999988663 46754
No 323
>PRK12939 short chain dehydrogenase; Provisional
Probab=55.91 E-value=73 Score=32.21 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=40.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+|| +..|.|+...+++..+... .-.|++.+.+...+..+...++..+ .++.+...|...
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEA-------GATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 56677 4455788888888887642 2468888888887776665554443 345666666554
No 324
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=55.70 E-value=40 Score=36.39 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=33.6
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+|+ -|..++|+|..+ ...|++.+.+..+...++. .+|...
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~----------G~~Vi~~~~~~~~~~~~~~---~lGa~~ 200 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK----------GCYVVGSAGSDEKVDLLKN---KLGFDD 200 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH---hcCCce
Confidence 467899999977652 334455555543 2468888888888776643 256643
No 325
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=54.76 E-value=48 Score=35.61 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=27.8
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.+.+++|.+||-.++|. |..+.++|..++ ...|++.+.+..+...+
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G---------~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG---------AKRVIAVDIDDEKLAVA 200 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHH
Confidence 34677899999984322 333444444432 22488888877776655
No 326
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.17 E-value=65 Score=34.88 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=32.0
Q ss_pred cCCCCCCEEEeecCCcchH---HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsK---T~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ |+. ++++|..++ ...|++.|.+.+|..+++ .+|..
T Consensus 162 ~~~~~g~~vlI~g~--g~iG~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~----~~g~~ 213 (351)
T cd08285 162 ANIKLGDTVAVFGI--GPVGLMAVAGARLRG---------AGRIIAVGSRPNRVELAK----EYGAT 213 (351)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHH----HcCCc
Confidence 35678999988843 444 344444432 246999999999887664 46653
No 327
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=54.10 E-value=51 Score=30.16 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=47.3
Q ss_pred cccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC-CC-CCCcHHHHHHHHHH
Q 004787 176 LFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MN-PVENEAVVAEILRK 253 (730)
Q Consensus 176 ~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS-l~-p~ENEaVV~~~L~~ 253 (730)
+||.|+-+||......+........ .-..+..-.+.+|+++| +|.+.|-|-+ +. ..+.-....+.|-.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~--------~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKK--------KKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhccc--------ccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 6999999999866554322111110 12334456788999999 8999887665 33 45555556666654
Q ss_pred CCCcEEEEec
Q 004787 254 CEGSVELVDV 263 (730)
Q Consensus 254 ~~~~velvd~ 263 (730)
...-..+++.
T Consensus 72 ~~~i~~i~~f 81 (106)
T PF07669_consen 72 NTNIKKIIDF 81 (106)
T ss_pred CCCeeEEEEC
Confidence 4333455554
No 328
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.44 E-value=1e+02 Score=32.84 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=28.8
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
...+++|.+||-.+ + |+....+++++... +-..|++.+.+.++...+
T Consensus 154 ~~~~~~g~~vlI~g-~-g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 154 LLGIKPGDSVLVFG-A-GPIGLLLAQLLKLN------GASRVTVAEPNEEKLELA 200 (334)
T ss_pred hcCCCCCCEEEEEC-C-CHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHH
Confidence 34568899999994 3 54433333333321 112488889898887765
No 329
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.80 E-value=75 Score=32.86 Aligned_cols=47 Identities=19% Similarity=0.031 Sum_probs=29.6
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
...+++|++||=.++|+ |.-+.++|..++ ...|++.+.+..|+..+.
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g---------~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAG---------AREVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCcEEEECCCHHHHHHHH
Confidence 34678899999885432 333444444432 124999999999877443
No 330
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=52.73 E-value=75 Score=33.69 Aligned_cols=50 Identities=20% Similarity=0.046 Sum_probs=32.9
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+| +-|..++|+|..+ ...|++.+.+.++...++ .+|..
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~----------G~~vi~~~~s~~~~~~l~----~~Ga~ 190 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK----------GCKVIGCAGSDDKVAWLK----ELGFD 190 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----HcCCC
Confidence 45789999986654 2344455555553 246899998888887664 36664
No 331
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=52.66 E-value=23 Score=39.30 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=36.9
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
++.+++|.+||..++|+ |..+.++|..++ .+.|+++|.+..+..+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g---------~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG---------AERVIAIDRVPERLEMARS 227 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHH
Confidence 45678999999997766 666777777643 2469999999999887665
No 332
>PRK06181 short chain dehydrogenase; Provisional
Probab=52.65 E-value=95 Score=31.89 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=39.1
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|| +.-|+|+...+++..+... ...|++.+.+......+.+.++..+. ++.+...|..+
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~-------g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARA-------GAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSD 61 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 455 3446778888888777542 35899999988777766666655543 45556666554
No 333
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=52.30 E-value=67 Score=36.08 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=31.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ |+....++++.... ....|++.|.+..|+.+++ ++|..
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~----~~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIAGA--GPVGLAAAASAQLL------GAAVVIVGDLNPARLAQAR----SFGCE 232 (393)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHH----HcCCe
Confidence 35788999987544 44443333333221 1235677899988888764 46763
No 334
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.18 E-value=67 Score=35.22 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=33.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ |+....+++++... +...|++.|.+.+|...+ +.+|..
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~------G~~~vi~~~~~~~~~~~~----~~~Ga~ 234 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIR------GASRIIGVDLNPSKFEQA----KKFGVT 234 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHH----HHcCCc
Confidence 45789999988754 55544444443321 123799999999988866 346754
No 335
>PRK06194 hypothetical protein; Provisional
Probab=51.38 E-value=1.8e+02 Score=30.24 Aligned_cols=61 Identities=5% Similarity=0.079 Sum_probs=39.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+|| +.-|.|+...++++.|... ...|+..|.+..++..+...+...+. .+.+...|..+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAAL-------GMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 45677 5556677888888887652 34788999988777666555544332 45556666654
No 336
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.01 E-value=1.2e+02 Score=31.51 Aligned_cols=62 Identities=8% Similarity=-0.031 Sum_probs=37.4
Q ss_pred CCCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|..||=.+|++| +....+++.+... ...|+.++.+.+....+.+..+.++ .+.+...|..+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~-------G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~ 71 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL-------GAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVRE 71 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc-------CCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCC
Confidence 3678999998874 8888888877642 3467777887654443444333333 22344455444
No 337
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=50.71 E-value=48 Score=35.48 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+.+.++|||++||-=-.++-.. +. .+...++|.|+|..-++.+.+-+..++..
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~---~~------~~~a~Y~a~DID~~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWM---PE------APGATYIAYDIDSQLVEFLNAFLAVLGVP 155 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTT---TS------STT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred cCCCCchhhhhhccCCceehhhc---cc------CCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 34557899999999766555432 22 23569999999999999999999999864
No 338
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.38 E-value=1.1e+02 Score=31.80 Aligned_cols=64 Identities=6% Similarity=0.023 Sum_probs=36.0
Q ss_pred CCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|..+|=.+|++ ++.-..++..+... ...|+..+.+.+....+......+....+.+...|..+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA-------GAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC
Confidence 367888888874 78888888888752 34677666543222223222233322344455555544
No 339
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=49.89 E-value=35 Score=36.86 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
.-.|-|++||-+- ||+.. .-.|+++|+. ..|-.|+..|..+.|-
T Consensus 181 ~~vIaD~GCGEak----iA~~~----------~~kV~SfDL~---------------a~~~~V~~cDm~~vPl------- 224 (325)
T KOG3045|consen 181 NIVIADFGCGEAK----IASSE----------RHKVHSFDLV---------------AVNERVIACDMRNVPL------- 224 (325)
T ss_pred ceEEEecccchhh----hhhcc----------ccceeeeeee---------------cCCCceeeccccCCcC-------
Confidence 4578899999764 33311 3468888862 2334556666666542
Q ss_pred CCCCccccccccccccccccEEEecCCCC-CCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCS-GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCS-GdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
+..+.|++++ |= =.|| ++ ...+..|.+.|++||.+-..-.+
T Consensus 225 --------------~d~svDvaV~---CLSLMgt-----------------n~----~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 225 --------------EDESVDVAVF---CLSLMGT-----------------NL----ADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred --------------ccCcccEEEe---eHhhhcc-----------------cH----HHHHHHHHHHhccCceEEEEehh
Confidence 2367888776 42 2343 11 35688999999999977544222
Q ss_pred CCCCCcHHHHHHHHHHCCC
Q 004787 238 MNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 238 l~p~ENEaVV~~~L~~~~~ 256 (730)
+...+-.-...+|...|-
T Consensus 267 -SRf~dv~~f~r~l~~lGF 284 (325)
T KOG3045|consen 267 -SRFSDVKGFVRALTKLGF 284 (325)
T ss_pred -hhcccHHHHHHHHHHcCC
Confidence 112232224445555553
No 340
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=49.54 E-value=1.2e+02 Score=34.49 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCEEEeecCCcchHHHHHHHHH----hcCCC--CCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEII----HQSTN--PGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L----~~~~~--~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
.-.|+|++||+|.-|+.++..+ ..... ....|.-.|+-||.-..-...|-.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~ 120 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQ 120 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHh
Confidence 5689999999998887764433 22110 011245678888885443333333
No 341
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=49.15 E-value=95 Score=34.43 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhc----C---CCCCCCCCeEEEEEeCCH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQ----S---TNPGALPNGMVIANDLDV 121 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~----~---~~~~~~p~G~VvAnD~d~ 121 (730)
--+|+|++|+.|.-|+.++..+-. . ......|.-.|+=||.=.
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~ 66 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPS 66 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TT
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC
Confidence 358999999999999887654421 0 000123456899999843
No 342
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.74 E-value=1.2e+02 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=29.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
...+++|.+||-.++ |+....+++++... +...|++.+.+..+...+..
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~------G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAF------GATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHHH
Confidence 446789999998643 44433333333221 11238888888888776633
No 343
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=48.72 E-value=34 Score=39.33 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=45.9
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQ 147 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~ 147 (730)
.|||+++|+|-.+..++... .-.|+|+++-..+...+++-....|. .+|.|++.-..
T Consensus 69 ~vLdigtGTGLLSmMAvrag----------aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG----------ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhc----------CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 69999999998877776653 24699999999999999999988885 56777765433
No 344
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=48.67 E-value=30 Score=39.10 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=42.2
Q ss_pred CcEEEcc-ccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 58 GNITRQE-AVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 58 G~i~~Qd-~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
+.+|-|- .-..+-..+|++.|+++||=+++|-.. ++.+ |.. ....|+|+|+++.-.++|.-.+.
T Consensus 14 ~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N-~L~y---L~~-------~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 14 GLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCN-ALDY---LLA-------GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred ceeeccccCCcHHHHHHhCCCCCCeEEEEccCCch-HHHH---Hhc-------CCceEEEEeCCHHHHHHHHHHHH
Confidence 4555551 112233457899999999999987544 4433 222 14799999999998888865543
No 345
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=47.73 E-value=94 Score=33.28 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.++.+||-..+|. |..+.++|..++ ...|++.+.+..+..++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G---------~~~v~~~~~s~~~~~~~ 206 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG---------AAEIVATDLADAPLAVA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHH
Confidence 3889999865432 334455555432 12688999888877744
No 346
>PRK05599 hypothetical protein; Provisional
Probab=47.61 E-value=1.2e+02 Score=31.27 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=40.9
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.||=.+ |.++....++..+.. ...|+..+.+..++..+.+.++..+...+.+...|...
T Consensus 2 ~vlItG-as~GIG~aia~~l~~--------g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILG-GTSDIAGEIATLLCH--------GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD 60 (246)
T ss_pred eEEEEe-CccHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC
Confidence 355444 456678888887763 35788889999999888887776665445666666655
No 347
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=46.42 E-value=25 Score=36.52 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
++.+++|.+||.|+.+..+... ...|++||++..-..+.+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-----------~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-----------GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC--------------SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-----------ccceeeeechHHHHHHHHHHHh
Confidence 6889999999999988776542 4789999999886655543333
No 348
>PRK08324 short chain dehydrogenase; Validated
Probab=46.02 E-value=87 Score=37.93 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+|..||=.+ |.|+....++..+... ...|+++|.+..++..+...+... ..+.+...|......+. .
T Consensus 421 ~gk~vLVTG-asggIG~~la~~L~~~-------Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~--~- 487 (681)
T PRK08324 421 AGKVALVTG-AAGGIGKATAKRLAAE-------GACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQ--A- 487 (681)
T ss_pred CCCEEEEec-CCCHHHHHHHHHHHHC-------cCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHH--H-
Confidence 466777555 4567777888777642 347999999998877665544322 34555555554321110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRIVY 233 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp---GGrLVY 233 (730)
...........+|.|+..+-.+..+.+.. .++.|...-. .+ ..-...++..++++++. ||++|+
T Consensus 488 --------~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~---~N-~~g~~~l~~~~~~~l~~~~~~g~iV~ 555 (681)
T PRK08324 488 --------AFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFD---VN-ATGHFLVAREAVRIMKAQGLGGSIVF 555 (681)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHH---HH-hHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 00000011246899987553333333221 1222322111 11 11224456667777665 688887
Q ss_pred Ec
Q 004787 234 ST 235 (730)
Q Consensus 234 ST 235 (730)
.+
T Consensus 556 vs 557 (681)
T PRK08324 556 IA 557 (681)
T ss_pred EC
Confidence 54
No 349
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=45.46 E-value=1.3e+02 Score=32.97 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=28.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++|++||=++ .|+....++++.... ...|++.+.+.++...+ ++++|..
T Consensus 178 ~~~g~~vlV~G--~G~vG~~av~~Ak~~-------G~~vi~~~~~~~~~~~~---~~~~Ga~ 227 (357)
T PLN02514 178 KQSGLRGGILG--LGGVGHMGVKIAKAM-------GHHVTVISSSDKKREEA---LEHLGAD 227 (357)
T ss_pred CCCCCeEEEEc--ccHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHH---HHhcCCc
Confidence 36899998774 355443333333221 23578888777665433 2357764
No 350
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=45.15 E-value=2.5e+02 Score=32.26 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 219 MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 219 ~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
....+.|++|..+ --..|+.|...+.++..++++.
T Consensus 104 ~~i~~~l~~g~lV-I~~STv~pgtt~~~~~~~l~~~ 138 (425)
T PRK15182 104 ETVGTVLNRGDIV-VYESTVYPGCTEEECVPILARM 138 (425)
T ss_pred HHHHHhcCCCCEE-EEecCCCCcchHHHHHHHHHhc
Confidence 3445667885554 4457899999999999998863
No 351
>PRK07326 short chain dehydrogenase; Provisional
Probab=44.91 E-value=1.3e+02 Score=30.30 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=39.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |.|+....++..+... .-.|++++.++.+...+...+... ..+.+...|...
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAE-------GYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 56677655 5788888888877542 247999999988877666655432 335555555443
No 352
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=32 Score=38.56 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhccCCCEEEEE
Q 004787 212 SLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.+|. .+++-+.++.|||.||.+
T Consensus 203 ~i~~-~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 203 PIQV-NIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hHHH-HHHHHHHhccCCCeEEEE
Confidence 3555 789999999999999986
No 353
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=44.61 E-value=1.7e+02 Score=29.76 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=43.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da 146 (730)
+.++..||=.+ |.|+....++..|... ...|++.+.+......+...++..+...+.+...|.
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARH-------GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHC-------CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 34577777766 4677788888777642 348999999988887777777666544444444444
No 354
>PRK08339 short chain dehydrogenase; Provisional
Probab=44.51 E-value=3e+02 Score=28.59 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=41.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|..+|=.+| .|+....+++.|... ...|+.++.+..++..+.+.++...-.++.+...|..+
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTAS-SKGIGFGVARVLARA-------GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeCC-CCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 556665554 466777788877652 35799999999888887777655432345566666655
No 355
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=43.09 E-value=2e+02 Score=29.56 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=37.3
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+||=.+|+ |+....++..+... ...|+..+.+..++..+...++..+ .+.+...|...
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKK-------GARVVISSRNEENLEKALKELKEYG--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 45655654 56677777777642 3578899999888877776665443 34455555443
No 356
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=43.04 E-value=1.2e+02 Score=33.46 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=27.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++|++||=.++ |+....++++.... ...|++.+.+..+...+ ++++|..
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~-------Ga~vi~~~~~~~~~~~~---~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAF-------GLKVTVISSSSNKEDEA---INRLGAD 230 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHC-------CCEEEEEeCCcchhhhH---HHhCCCc
Confidence 468999998655 44443333333221 23578887776554322 3456764
No 357
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=42.98 E-value=2e+02 Score=27.13 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcc
Q 004787 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDK 164 (730)
Q Consensus 87 AAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d--~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~ 164 (730)
.|.|+....++..+... ....|+....+ ..+...+.+.++..+ .++.+...|......+.
T Consensus 7 Ga~~giG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~----------- 68 (167)
T PF00106_consen 7 GASSGIGRALARALARR------GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIR----------- 68 (167)
T ss_dssp TTTSHHHHHHHHHHHHT------TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHH-----------
T ss_pred CCCCHHHHHHHHHHHhc------CceEEEEeeecccccccccccccccccc-ccccccccccccccccc-----------
Confidence 34566777788777652 24578888888 788888888888776 66777777765421110
Q ss_pred ccccccccccccccEEEecCCCCCCCccccC
Q 004787 165 GIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195 (730)
Q Consensus 165 ~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~ 195 (730)
............+|.+++.+.....+.+...
T Consensus 69 ~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 69 ALIEEVIKRFGPLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp HHHHHHHHHHSSESEEEEECSCTTSBSGGGS
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 0000111233679999986655555555443
No 358
>PRK08643 acetoin reductase; Validated
Probab=42.86 E-value=2.8e+02 Score=28.26 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=39.9
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|| +.-|.|+...++++.|... ...|+..+.+..++..+...+...+ ..+.+...|...
T Consensus 4 ~~l-ItGas~giG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 4 VAL-VTGAGQGIGFAIAKRLVED-------GFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred EEE-EECCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 444 4556777888888888652 3478999999888877777666554 245555556544
No 359
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=42.82 E-value=41 Score=36.64 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=59.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
..|..+||.+||-|- .++. .|.-.++++|++.. |..-.+|.|.. .+...|+.+.|.
T Consensus 44 ~~gsv~~d~gCGngk-------y~~~------~p~~~~ig~D~c~~----l~~~ak~~~~~--~~~~ad~l~~p~----- 99 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGK-------YLGV------NPLCLIIGCDLCTG----LLGGAKRSGGD--NVCRADALKLPF----- 99 (293)
T ss_pred CCcceeeecccCCcc-------cCcC------CCcceeeecchhhh----hccccccCCCc--eeehhhhhcCCC-----
Confidence 458899999999883 3322 25668999997544 33334444443 345566666542
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE-EEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR-IVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr-LVYS 234 (730)
....||.+|.=+ ....|+. ...-.++++..++.|+|||. +||+
T Consensus 100 ----------------~~~s~d~~lsia-------------vihhlsT------~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 100 ----------------REESFDAALSIA-------------VIHHLST------RERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred ----------------CCCccccchhhh-------------hhhhhhh------HHHHHHHHHHHHHHhcCCCceEEEE
Confidence 235678777411 1111111 12335678889999999996 5664
No 360
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=42.45 E-value=2.5e+02 Score=28.62 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=41.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+|| +..|.|+...+++..|... ...|++++.++.+...+.+.++..+. .+.+...|...
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 67 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARA-------GAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTN 67 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC-------CCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCC
Confidence 55677 5556678888888887652 34788999999888877777765543 34555566544
No 361
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=42.40 E-value=1.2e+02 Score=34.76 Aligned_cols=42 Identities=14% Similarity=-0.048 Sum_probs=29.3
Q ss_pred CCCCEEEeecCCcchH-HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 77 QPDHFVLDMCAAPGSK-TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsK-T~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
-+|++|+=+++||=|. +++++..+ ...|+++|.++.|+..+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~----------Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ----------GARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC----------CCEEEEEECChhhHHHHH
Confidence 4799999999988444 33343332 247899999999976553
No 362
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=42.26 E-value=2.3e+02 Score=28.99 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.++ .|+....++..|... ...|+..+.+..+...+...+++.+. .+.+...|...
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~~-------G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 71 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFATA-------GASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITS 71 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 677887775 466677788777652 34688888888888777777665543 34555566554
No 363
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=41.77 E-value=5.2e+02 Score=31.09 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=45.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEec
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--------ANLIVTNH 144 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~--------~nv~vt~~ 144 (730)
-++.+.|..||=.+| .|+...++++.|... ...|++++.+..++..+...+..++. .++.++..
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~-------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKL-------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVEC 145 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEe
Confidence 355667877776655 688888888887642 34799999999888776665543221 24566666
Q ss_pred cccc
Q 004787 145 EAQH 148 (730)
Q Consensus 145 Da~~ 148 (730)
|..+
T Consensus 146 DLtD 149 (576)
T PLN03209 146 DLEK 149 (576)
T ss_pred cCCC
Confidence 6654
No 364
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.62 E-value=2.1e+02 Score=29.46 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=34.8
Q ss_pred CCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|..||-.+|+. ++.-..+++.|... ...|+..+.+. +.. ..++.+....+.+...|...
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~-------G~~Vi~~~r~~-~~~---~~~~~~~~~~~~~~~~Dl~~ 66 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ-------GATVIYTYQND-RMK---KSLQKLVDEEDLLVECDVAS 66 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC-------CCEEEEecCch-HHH---HHHHhhccCceeEEeCCCCC
Confidence 67888888875 67778888887642 34688877763 332 22333322334455555543
No 365
>PRK12937 short chain dehydrogenase; Provisional
Probab=41.56 E-value=1.7e+02 Score=29.40 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+..||=.+ |.|+...++++.|... ...|+.... +..+...+.+.+...+. .+.+...|..+...+. .
T Consensus 5 ~~~vlItG-~~~~iG~~la~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~--~- 72 (245)
T PRK12937 5 NKVAIVTG-ASRGIGAAIARRLAAD-------GFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVT--R- 72 (245)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHH--H-
Confidence 44555444 4677888888888652 235555444 34555556565555543 4555556655422110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
............|.|+..+.=.+.+.+...+ +..|...-..++ .-...++..+++.++.+|++|+.+++
T Consensus 73 --------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~--~~~~~~~~~~n~-~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 73 --------LFDAAETAFGRIDVLVNNAGVMPLGTIADFD--LEDFDRTIATNL-RGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCC--HHHHHHHHhhhc-hHHHHHHHHHHHHhccCcEEEEEeec
Confidence 0000001124578888744211111111111 111211111111 12234566677777788999999875
Q ss_pred C
Q 004787 238 M 238 (730)
Q Consensus 238 l 238 (730)
.
T Consensus 142 ~ 142 (245)
T PRK12937 142 V 142 (245)
T ss_pred c
Confidence 4
No 366
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.29 E-value=2e+02 Score=29.01 Aligned_cols=61 Identities=5% Similarity=-0.057 Sum_probs=40.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |.|+...+++..|... ...|++.+.+..+...+...++..+ .++.+...|...
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKE-------GVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 45666666 4778888888877542 3589999999888776665555443 245666666554
No 367
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.27 E-value=2.2e+02 Score=29.99 Aligned_cols=133 Identities=9% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+..||=.+|+. ++....++..+... ...|+..+.+......+....+.++.. .+...|..+...+.-
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~-------G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~--- 72 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQ-------GAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKS--- 72 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHH---
Confidence 56777777764 57778888877652 347777787753223333333344432 334445544221110
Q ss_pred CCCCCccccccccccccccccEEEecCCCCC----CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSG----DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG----dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...........+|.++..+--.. .+.+. ..++.|.+- -..++.. ...+.+.++.+++.+|+||
T Consensus 73 --------~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~---~~vN~~g-~~~l~~~~~p~m~~~g~Iv 140 (274)
T PRK08415 73 --------LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIA---MEISVYS-LIELTRALLPLLNDGASVL 140 (274)
T ss_pred --------HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHH---hhhhhHH-HHHHHHHHHHHhccCCcEE
Confidence 00001112356898887553211 01111 122333321 1111211 2335666677777789988
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
+.+
T Consensus 141 ~is 143 (274)
T PRK08415 141 TLS 143 (274)
T ss_pred EEe
Confidence 764
No 368
>PRK06914 short chain dehydrogenase; Provisional
Probab=41.24 E-value=1.8e+02 Score=30.26 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=39.4
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
.||= +.|.|+....++..|... .-.|++.+.+...+..+.+.++..+. .++.+...|..+
T Consensus 5 ~~lI-tGasg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 5 IAIV-TGASSGFGLLTTLELAKK-------GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred EEEE-ECCCchHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 4444 446677778888777652 24788999988888777766655443 346666666655
No 369
>PRK09242 tropinone reductase; Provisional
Probab=41.16 E-value=2.3e+02 Score=29.04 Aligned_cols=62 Identities=6% Similarity=-0.078 Sum_probs=39.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~ 148 (730)
|..||=.+| .|+....++..+... .-.|++.+.+..++..+..+++... ...+.+...|...
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGL-------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 567776665 566777787777642 3478999999888877766665441 1245555556544
No 370
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=40.50 E-value=1.1e+02 Score=32.95 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
..++|.+||-.++|. |..++++|..++ ...|++.+.+..|..++.
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAG---------ASLVIASDPNPYRLELAK 205 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHHH
Confidence 346888888854321 334445554432 115777788888776554
No 371
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=40.39 E-value=24 Score=41.16 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHH
Q 004787 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 251 (730)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L 251 (730)
...||...=+.|+|||.++.- ++-+|+.++-
T Consensus 446 ~~~illEmDRILRP~G~~iiR-------D~~~vl~~v~ 476 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIR-------DTVDVLEKVK 476 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEe-------ccHHHHHHHH
Confidence 366888889999999999874 5555655544
No 372
>PLN02702 L-idonate 5-dehydrogenase
Probab=39.34 E-value=2.1e+02 Score=31.26 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=31.7
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+.+|.+||=.+ .|+....++++.... +...|++.|.+..|..++. .+|...
T Consensus 177 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~~ 229 (364)
T PLN02702 177 ANIGPETNVLVMG--AGPIGLVTMLAARAF------GAPRIVIVDVDDERLSVAK----QLGADE 229 (364)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HhCCCE
Confidence 4577899998884 354433333333221 1235889999988877543 466543
No 373
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=39.04 E-value=3e+02 Score=31.09 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=25.6
Q ss_pred HHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 219 MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 219 ~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
....+.+++|-.+|.+ .|+.|...+.+...++++.
T Consensus 104 ~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~ 138 (411)
T TIGR03026 104 ETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERA 138 (411)
T ss_pred HHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhh
Confidence 3344567887666664 4888999999988888763
No 374
>PRK08265 short chain dehydrogenase; Provisional
Probab=38.90 E-value=2.1e+02 Score=29.57 Aligned_cols=58 Identities=5% Similarity=0.002 Sum_probs=35.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+....++..|... ...|+..|.+...+..+... ++ ..+.+...|..+
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~ 63 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAA-------GARVAIVDIDADNGAAVAAS---LG-ERARFIATDITD 63 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH---hC-CeeEEEEecCCC
Confidence 45666555 4566777888777642 34789999988766554433 33 234555556554
No 375
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=38.63 E-value=2.5e+02 Score=29.77 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=28.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
..++++..||=. |.|+....++++.... ...|++.+.+..+...+
T Consensus 163 ~~~~~~~~vlV~--g~g~vg~~~~~la~~~-------g~~v~~~~~~~~~~~~~ 207 (329)
T cd08298 163 AGLKPGQRLGLY--GFGASAHLALQIARYQ-------GAEVFAFTRSGEHQELA 207 (329)
T ss_pred hCCCCCCEEEEE--CCcHHHHHHHHHHHHC-------CCeEEEEcCChHHHHHH
Confidence 456788888876 3455544444444331 35788888888777655
No 376
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=38.54 E-value=1.2e+02 Score=31.90 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=46.1
Q ss_pred chhhccCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecc
Q 004787 69 VPPLFLDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHE 145 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~D 145 (730)
|.+++..-+ -..+++.|++ +.+.|+.|+.+-+.. .|+++++-.+..........+..++..+ +.++.++
T Consensus 33 ISAlAAG~n-AkliVe~~s~g~~~~ttiaLaaAAr~T-------gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 33 ISALAAGWN-AKLIVEAWSSGGAISTTIALAAAARQT-------GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred HHHHhcccc-ceEEEEEecCCCchHhHHHHHHHHHhc-------CCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 344444433 3466777654 334677777776653 6999999999888777778788777654 4665565
Q ss_pred c
Q 004787 146 A 146 (730)
Q Consensus 146 a 146 (730)
+
T Consensus 105 ~ 105 (218)
T PF07279_consen 105 A 105 (218)
T ss_pred C
Confidence 4
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=38.19 E-value=2.6e+02 Score=28.39 Aligned_cols=61 Identities=7% Similarity=0.007 Sum_probs=41.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+....++..|... ...|++++.+.+++..+.+.++..+. ++.+...|..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFARE-------GAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 556776665 566777787777642 34799999999888777777766543 45566666654
No 378
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=38.10 E-value=1.6e+02 Score=31.60 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=29.1
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
...+++|.+||-.+++. |.-++++|..+ ...|++...+..+...+
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~----------g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR----------GARVIVVDIDDERLEFA 199 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc----------CCeEEEECCCHHHHHHH
Confidence 34578899999984321 33444555443 35688887788877766
No 379
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=38.01 E-value=1.8e+02 Score=31.47 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=30.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.++++|.+||=.+ .|+....++++.... +...|++.+.+..+...+.
T Consensus 168 ~~~~~g~~vlI~g--~g~vG~~a~q~a~~~------G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 168 SGFKPGDTALVLG--AGPIGLLTILALKAA------GASKIIVSEPSEARRELAE 214 (351)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH
Confidence 4577898888774 355544444444331 1237899999999887663
No 380
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=37.65 E-value=60 Score=30.64 Aligned_cols=40 Identities=30% Similarity=0.245 Sum_probs=26.1
Q ss_pred eecCCcc--hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 84 DMCAAPG--SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 84 DmCAAPG--sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
|++|.-| +.+..++.... .+.+.|+|+|.++..+..|..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~-------~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKC-------GPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHT-------S--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHc-------CCCCEEEEEECCHHHHHHHhHH
Confidence 8899999 66666543211 2468999999999999999988
No 381
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=37.38 E-value=2.6e+02 Score=30.36 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=32.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++|.+||=.+ .|+....+++++... +.+.|++.+.+..|...+ +.+|...
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~------G~~~v~~~~~~~~~~~~~----~~~g~~~ 225 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLA------GARRVIVIDGSPERLELA----REFGADA 225 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHH----HHcCCCe
Confidence 5888888874 366655555544431 123799999998887755 3567643
No 382
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=37.30 E-value=1.4e+02 Score=33.26 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=13.9
Q ss_pred HHHHHhhccCCCEEEEE
Q 004787 218 AMRGISLLKVGGRIVYS 234 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYS 234 (730)
+..++++|++||++|..
T Consensus 256 ~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 256 LLPLFSLLKVSGKLVAL 272 (375)
T ss_pred HHHHHHhhcCCCEEEEE
Confidence 56678899999999864
No 383
>PRK12829 short chain dehydrogenase; Provisional
Probab=37.23 E-value=1.3e+02 Score=30.76 Aligned_cols=61 Identities=11% Similarity=-0.004 Sum_probs=40.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
-++.+||=.+|. |+...+++..|... ...|++++.+..+...+.+...+. .+.+...|...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~-------g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEA-------GARVHVCDVSEAALAATAARLPGA---KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCC
Confidence 367788877764 77888888887652 346899999887776655443322 44555666554
No 384
>PRK07576 short chain dehydrogenase; Provisional
Probab=37.16 E-value=3.4e+02 Score=28.12 Aligned_cols=62 Identities=5% Similarity=0.074 Sum_probs=39.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
++.+||=.+| .|+...+++..+... ...|++.+.+...+..+...+...+. .+.+...|...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARA-------GANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCC
Confidence 4667777764 667778888777642 34799999988877666555554432 34455555543
No 385
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.75 E-value=62 Score=35.39 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=44.3
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccccchhhh
Q 004787 215 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 294 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~~~~~~~ 294 (730)
.+.|..|..+|+|||+|+.- |++..|+--| ..+++.+.... + ..-..|+...+.....|.+|+
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi--sfHSlEDriV-K~~f~~~~~~~---------~-----~~~~~~~~~~~k~i~ps~~Ei 278 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI--SFHSLEDRIV-KRFFRELSKGC---------C-----GNKPKLKLLTKKPIKPSEEEI 278 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHHHH-HHHHHHhcccc---------c-----ccCCceEEcCCCCcCCCHHHH
Confidence 46789999999999999864 6777787555 55566543110 0 001236665555667788888
Q ss_pred hhhhcc
Q 004787 295 RKFRRI 300 (730)
Q Consensus 295 ~~~~~~ 300 (730)
..+-|+
T Consensus 279 ~~NpRs 284 (296)
T PRK00050 279 AANPRA 284 (296)
T ss_pred HhCcch
Confidence 766553
No 386
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=36.59 E-value=3.4e+02 Score=27.39 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=38.6
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+||=.+ |.|+....++..|... ...|++.+.+..+...+...++..+ .++.+...|...
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~-------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAA-------GANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 344444 5677888888777542 3479999999888877777665544 245555555544
No 387
>PRK07102 short chain dehydrogenase; Provisional
Probab=36.53 E-value=3.7e+02 Score=27.21 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=40.1
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+||=.+ |+|+....++..+... ...|++.+.+..+...+...+...+..++.+...|...
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAA-------GARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 455444 5678888888887652 24799999998887666555543344466677676655
No 388
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=35.95 E-value=3.5e+02 Score=27.53 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=41.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|.+||=.+ |.|+....+++.+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA-------GAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 366777666 5678888888877642 34789999998888777776665442 34455555544
No 389
>KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis]
Probab=35.74 E-value=1.1e+02 Score=30.32 Aligned_cols=121 Identities=20% Similarity=0.361 Sum_probs=72.7
Q ss_pred hhhHHHHHhhhcCCCCCCCCCceEeecCCC----CcceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEEecCCCCC
Q 004787 502 ETIINSIKTFYGIDDSFQLSGQLVSRNGDT----NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 577 (730)
Q Consensus 502 ~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~----~~~k~iy~~s~~vk~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~ 577 (730)
..+++.+..|-|=+-+ +|+.|.... .++.++||+|+-+.+.- .+. .+=++++.|. .|.|-. |
T Consensus 10 k~vfekla~yIG~Nv~-----~lidr~D~~~cfrlhkdRVyyvsEr~~k~a-~~i---sr~~L~s~Gt-c~GKFT-K--- 75 (180)
T KOG3492|consen 10 KVVFEKLAKYIGDNVS-----HLIDRPDGTYCFRLHKDRVYYVSERIMKLA-ACI---SRKNLVSLGT-CFGKFT-K--- 75 (180)
T ss_pred HHHHHHHHHHHhhhhh-----eeecCCCCceeeEeeCceEEeehHHHHHHH-hhh---cccceeEEeE-EEeeee-c---
Confidence 4568889988886533 333333221 24689999999999954 444 3567788886 344432 1
Q ss_pred CcccceeeccChhhhhhhcccCcE-EecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEc
Q 004787 578 SAPCSFRISSEGLPVILPYITKQI-LYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 645 (730)
Q Consensus 578 ~~~c~~Ri~~eGl~~l~p~i~~r~-v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~ 645 (730)
.-.||+.--.|.+|.||-.-.+ |.-+.| ...|-- +..+..-++.--+++..+.-|+++.
T Consensus 76 --t~kfrlhitaL~~La~~Ak~KvWiKp~~E-m~flYG------NhvlKs~vgRitd~~p~~~GVvVys 135 (180)
T KOG3492|consen 76 --TGKFRLHITALDYLAPYAKYKVWIKPNAE-MQFLYG------NHVLKSGVGRITDGIPQHQGVVVYS 135 (180)
T ss_pred --cceEEEeeeehhhhhhhhheeEEeccCcc-cceeec------ccchhcccceecCCCCCcceEEEEe
Confidence 1489999999999999976443 444433 221111 1222223344444566677777776
No 390
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.05 E-value=2.8e+02 Score=27.80 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=39.4
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+....+++.+... .-.|++.+.+..++..+...+...+ ++.+...|..+
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKE-------GAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCC
Confidence 567777776 477788888877642 3479999999888876655554332 45555555443
No 391
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.00 E-value=2.9e+02 Score=28.94 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=34.5
Q ss_pred CCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..+|=.+|+. ++.-..++..|... ...|+.++.+......+....+.++. ......|...
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~-------Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d 68 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQ-------GAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVED 68 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhC-------CCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCC
Confidence 66788888876 36777788777652 34677777765443333333333442 1233445443
No 392
>PRK07063 short chain dehydrogenase; Provisional
Probab=34.99 E-value=2.8e+02 Score=28.45 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=41.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+...+++..|... ...|+..+.+..++..+...+...+ ..++.+...|..+
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~-------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFARE-------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 567776665 567778888877652 3478999999988887777765521 2245555666544
No 393
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=34.94 E-value=2.3e+02 Score=31.27 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=33.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=. |.|+....++++.... +...|++.+.+..|..++. .+|..
T Consensus 199 ~~~~~g~~VlV~--g~g~vG~~ai~lA~~~------G~~~vi~~~~~~~~~~~~~----~~g~~ 250 (384)
T cd08265 199 GGFRPGAYVVVY--GAGPIGLAAIALAKAA------GASKVIAFEISEERRNLAK----EMGAD 250 (384)
T ss_pred CCCCCCCEEEEE--CCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHH----HcCCC
Confidence 357889999877 3466655555554431 1226999999888765543 46654
No 394
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=34.83 E-value=70 Score=33.59 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHHHHhhccCCCE-----EEEE---cCCC-CCCCcHHHHHHHHHHCC
Q 004787 215 VQIAMRGISLLKVGGR-----IVYS---TCSM-NPVENEAVVAEILRKCE 255 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGr-----LVYS---TCSl-~p~ENEaVV~~~L~~~~ 255 (730)
-++|+++.++|+++|. |... .|-- +..=++....+++...|
T Consensus 124 G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LG 173 (219)
T PF11968_consen 124 GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLG 173 (219)
T ss_pred HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCC
Confidence 4689999999999999 4433 2321 12334566666666654
No 395
>PRK07832 short chain dehydrogenase; Provisional
Probab=34.68 E-value=1.9e+02 Score=30.06 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004787 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (730)
Q Consensus 87 AAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~ 147 (730)
-|.|+....+++.+... ...|+.++.+...+..+...+...+...+.+...|..
T Consensus 7 Gas~giG~~la~~la~~-------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 7 GAASGIGRATALRLAAQ-------GAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred CCCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 35677777888777642 3468888888887776666665554433333444443
No 396
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.67 E-value=2.8e+02 Score=28.75 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=22.6
Q ss_pred CCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH
Q 004787 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (730)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~ 121 (730)
|..+|=.+|+.| +....+++.+... ...|+..+.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~-------G~~v~~~~r~~ 44 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH-------GAELWFTYQSE 44 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc-------CCEEEEEeCch
Confidence 556777777664 5667777776542 23677777664
No 397
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=34.54 E-value=2.4e+02 Score=31.03 Aligned_cols=111 Identities=15% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+++|+.||=.+ .|+....+++..... +...|++.|.+..+..++. .+|. .+ + +.....+.. .+
T Consensus 173 ~~~~g~~vlI~g--~g~vg~~~~~~a~~~------G~~~vi~~~~~~~~~~~~~----~~g~-~~-v-~~~~~~~~~-~i 236 (375)
T cd08282 173 GVQPGDTVAVFG--AGPVGLMAAYSAILR------GASRVYVVDHVPERLDLAE----SIGA-IP-I-DFSDGDPVE-QI 236 (375)
T ss_pred CCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCC-eE-e-ccCcccHHH-HH
Confidence 467899998853 355444444443321 1126888999998887664 3554 11 1 111111000 00
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.......+|.|+- |+|....+++..+|.. ..+..++++|+++|+++.
T Consensus 237 ---------------~~~~~~~~d~v~d---~~g~~~~~~~~~~~~~--------------~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 237 ---------------LGLEPGGVDRAVD---CVGYEARDRGGEAQPN--------------LVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred ---------------HHhhCCCCCEEEE---CCCCcccccccccchH--------------HHHHHHHHHhhcCcEEEE
Confidence 0001135788864 7775554444332221 235677889999999863
No 398
>PRK10083 putative oxidoreductase; Provisional
Probab=34.38 E-value=2.5e+02 Score=29.97 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=32.8
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ |+....++++.... .+...|++.|.+..|..++. .+|..
T Consensus 156 ~~~~~g~~vlI~g~--g~vG~~~~~~a~~~-----~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 156 TGPTEQDVALIYGA--GPVGLTIVQVLKGV-----YNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 45788999988763 55544444433210 01346889999999887664 46653
No 399
>PRK06949 short chain dehydrogenase; Provisional
Probab=34.34 E-value=5.1e+02 Score=26.25 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+.+||=.+ |.|+...+++..+... .-.|++.+.+..++..+...+...+. ++.+...|...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~-------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQA-------GAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 356777666 5677788888887642 23799999999988877776654432 34555555543
No 400
>PRK05867 short chain dehydrogenase; Provisional
Probab=34.15 E-value=3.7e+02 Score=27.45 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=41.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|..||=.+| .|+...++++.|... ...|+..+.+..++..+...++..+ ..+.....|...
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEA-------GAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 667776665 456677888877652 3478899999988888877776554 334455555443
No 401
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=33.71 E-value=3.5e+02 Score=27.38 Aligned_cols=54 Identities=7% Similarity=0.047 Sum_probs=35.3
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 87 AAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|.|+....++..|... .-.|+.++.+..++..+...+...+. ++.+...|...
T Consensus 7 G~sg~iG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 60 (254)
T TIGR02415 7 GGAQGIGKGIAERLAKD-------GFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSD 60 (254)
T ss_pred CCCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 35677888888877642 34788899888887766666655442 35555555443
No 402
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=33.51 E-value=3.9e+02 Score=27.21 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |.|+...+++..|... ...|+..+.+..++..+.+.++..+. .+.+...|...
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~-------G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 69 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEY-------GAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTH 69 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCC
Confidence 45666555 5577888888888652 34788899998888777776665442 34444555544
No 403
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.19 E-value=3.3e+02 Score=27.39 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=37.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... .-.|++.+.+..++..+...+.. + ..+.+...|...
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAE-------GARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCC
Confidence 44566555 4567778888777642 23699999999887776665543 2 235555555443
No 404
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=31.99 E-value=2.7e+02 Score=30.44 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=32.7
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+ +|+....++++.... +.-.|++.+.+..|...+. .+|..
T Consensus 179 ~~~~~g~~vlI~g--~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~ 230 (365)
T cd05279 179 AKVTPGSTCAVFG--LGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAK----QLGAT 230 (365)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHH----HhCCC
Confidence 4678899998863 466554444443321 1225889998888887763 46653
No 405
>PRK07478 short chain dehydrogenase; Provisional
Probab=31.16 E-value=4.5e+02 Score=26.73 Aligned_cols=61 Identities=5% Similarity=0.048 Sum_probs=40.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |.|+....+++.|... ...|+..+.+...+..+...++..+. ++.+...|...
T Consensus 6 ~k~~lItG-as~giG~~ia~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 66 (254)
T PRK07478 6 GKVAIITG-ASSGIGRAAAKLFARE-------GAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRD 66 (254)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 45666444 5567777888777642 24788899998888887777766553 34555555544
No 406
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=31.06 E-value=2.4e+02 Score=30.54 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=59.5
Q ss_pred CEEEeecCCc--chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCcccC
Q 004787 80 HFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 80 ~~VLDmCAAP--GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n--v~vt~~Da~~fp~~~~~ 155 (730)
...||++||- -+-+=++|+... |..+|+-+|.|+--+...+..+.. .++ ..++..|...-..+ +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~--------P~aRVVYVD~DPvv~ah~ralL~~--~~~g~t~~v~aD~r~p~~i-L~ 138 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA--------PDARVVYVDNDPVVLAHARALLAD--NPRGRTAYVQADLRDPEAI-LA 138 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH---------TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHH-HC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC--------CCceEEEECCCchHHHHHHhhhcC--CCCccEEEEeCCCCCHHHH-hc
Confidence 5789999982 234667777764 579999999999887766555433 344 77888887763221 10
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
... . ...-.-...+=.+|+ |++-..+|. . --..|+.+-...|.||..|+.|-
T Consensus 139 ~p~-------~-~~~lD~~rPVavll~-------~vLh~v~D~------~-------dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 139 HPE-------V-RGLLDFDRPVAVLLV-------AVLHFVPDD------D-------DPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp SHH-------H-HCC--TTS--EEEEC-------T-GGGS-CG------C-------THHHHHHHHHCCS-TT-EEEEEE
T ss_pred CHH-------H-HhcCCCCCCeeeeee-------eeeccCCCc------c-------CHHHHHHHHHHhCCCCceEEEEe
Confidence 000 0 000000112223333 333322221 0 12468888899999999999996
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
.+-
T Consensus 191 ~t~ 193 (267)
T PF04672_consen 191 ATD 193 (267)
T ss_dssp EB-
T ss_pred cCC
Confidence 553
No 407
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=30.79 E-value=3.3e+02 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=28.5
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
+.+.++..||-.++ |+....+++++... ...|++.+.+..+...+
T Consensus 158 ~~~~~~~~vlI~g~--g~iG~~~~~~a~~~-------G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 158 AGPRPGERVAVLGI--GGLGHLAVQYARAM-------GFETVAITRSPDKRELA 202 (330)
T ss_pred hCCCCCCEEEEECC--CHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 35678899999844 44444444443321 24688888888887665
No 408
>PRK07831 short chain dehydrogenase; Provisional
Probab=30.78 E-value=5.5e+02 Score=26.28 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=41.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR-lg~~nv~vt~~Da~~ 148 (730)
..+.+||=.+++..+....++..+... ...|+..|.+..++......++. ++..++.+...|...
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEE-------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 346778777765225667777766542 24688899988888777666654 443456666666554
No 409
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=30.78 E-value=2.3e+02 Score=30.26 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=31.9
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++|+ |.-++++|..+. ...|++.+.+.++...+. .+|..
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~---------g~~v~~~~~~~~~~~~~~----~~g~~ 209 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF---------NAKVIAVDINDDKLALAK----EVGAD 209 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC---------CCeEEEEeCChHHHHHHH----HcCCc
Confidence 4568899988887421 223344444321 257999999999887763 35653
No 410
>PRK06701 short chain dehydrogenase; Provisional
Probab=30.64 E-value=3.3e+02 Score=28.88 Aligned_cols=135 Identities=9% Similarity=0.049 Sum_probs=64.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~-~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.+.+||=.+| .|+....++..+... ...|+.++.+. .....+...++..+ ..+.+...|..+...+. .
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~-------G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~--~ 113 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE-------GADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCK--D 113 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHH--H
Confidence 3667777765 566677777777542 34677777764 34444444444333 24555666655422110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccC-hh-hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PD-IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~-pd-~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...........+|.|+..+ |.+..... .+ .+..|...-..+ ...-..++..++..++++|+|||.
T Consensus 114 ---------~~~~i~~~~~~iD~lI~~A---g~~~~~~~~~~~~~~~~~~~~~~N-~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 114 ---------AVEETVRELGRLDILVNNA---AFQYPQQSLEDITAEQLDKTFKTN-IYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred ---------HHHHHHHHcCCCCEEEECC---cccCCCCCcccCCHHHHHHHHhhh-hHHHHHHHHHHHHHHhhCCeEEEE
Confidence 0000001123678888744 32221110 00 011221111111 122345666667777788999986
Q ss_pred cC
Q 004787 235 TC 236 (730)
Q Consensus 235 TC 236 (730)
+-
T Consensus 181 sS 182 (290)
T PRK06701 181 GS 182 (290)
T ss_pred ec
Confidence 53
No 411
>PRK06196 oxidoreductase; Provisional
Probab=30.41 E-value=3.7e+02 Score=28.78 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=36.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...+. .+.+...|...
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~-------G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d 82 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQA-------GAHVIVPARRPDVAREALAGID-----GVEVVMLDLAD 82 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCC
Confidence 55677555 5577888888877652 3478889998887765554443 24445555544
No 412
>PRK07454 short chain dehydrogenase; Provisional
Probab=30.37 E-value=3.4e+02 Score=27.33 Aligned_cols=61 Identities=5% Similarity=-0.153 Sum_probs=41.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+....++..|... ...|++.+.+......+...++..+ .++.+...|...
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKA-------GWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSN 66 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCC
Confidence 34566555 5788888888887652 2479999999888777766665544 345566666655
No 413
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.31 E-value=62 Score=32.77 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=40.2
Q ss_pred ccCcEEEccccccchhhccC-C--CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 56 EIGNITRQEAVSMVPPLFLD-V--QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd-~--~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
.+|++.+-...-.++.+.|. + -.|.+||.+++|=-+.+-.|+.. ..|...|.--|-+.+.+.-++.-..
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~--------~a~~~~v~ltdgne~svrnv~ki~~ 75 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIAC--------KAPDSSVWLTDGNEESVRNVEKIRN 75 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheee--------ecCCceEEEecCCHHHHHHHHHHHh
Confidence 35666665444445544442 2 23678888886643332222211 1245678888998888776666544
Q ss_pred Hc
Q 004787 133 RM 134 (730)
Q Consensus 133 Rl 134 (730)
++
T Consensus 76 ~n 77 (201)
T KOG3201|consen 76 SN 77 (201)
T ss_pred cc
Confidence 43
No 414
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.31 E-value=86 Score=33.88 Aligned_cols=93 Identities=25% Similarity=0.356 Sum_probs=52.8
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc-CCCEEEEEcCCCCCCCcH---------
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCSMNPVENE--------- 244 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK-pGGrLVYSTCSl~p~ENE--------- 244 (730)
...+.|++|=|-||.--. -.++|+.++.-+| .|-+++|||--|...|--
T Consensus 147 HePeLlILDEPFSGLDPV---------------------N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~k 205 (300)
T COG4152 147 HEPELLILDEPFSGLDPV---------------------NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKK 205 (300)
T ss_pred cCCCEEEecCCccCCChh---------------------hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecC
Confidence 357899999999986532 1234444444343 345666665444221110
Q ss_pred ------HHHHHHHHHCCCcEEEEecCccCCccccCCCcccceeccCCccc
Q 004787 245 ------AVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWL 288 (730)
Q Consensus 245 ------aVV~~~L~~~~~~velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~ 288 (730)
.-|..+-+.+|...-+++-...++.|...||+..|.-...|.|+
T Consensus 206 G~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~~~~~~G~~~ 255 (300)
T COG4152 206 GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGSWR 255 (300)
T ss_pred CceEEeccHHHHHHhcCCceEEEeccCchHHHhcCCCceeeeeccCCceE
Confidence 11233334455555566655556667788999988765555553
No 415
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=30.24 E-value=5.5e+02 Score=25.72 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=39.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+....++..|... .-.|++.+.+..+...+...+...+ .++.+...|..+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAAD-------GAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRD 66 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 45777555 4677778888777642 2478999998877776666555443 235555555543
No 416
>PRK05717 oxidoreductase; Validated
Probab=30.13 E-value=3e+02 Score=28.17 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=36.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.++ .|+...++++.|... ...|+..|.+..+...+... ++ ..+.+...|...
T Consensus 10 ~k~vlItG~-sg~IG~~~a~~l~~~-------g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~ 67 (255)
T PRK05717 10 GRVALVTGA-ARGIGLGIAAWLIAE-------GWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVAD 67 (255)
T ss_pred CCEEEEeCC-cchHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCC
Confidence 567775554 577888888888652 34788889887766554332 33 234555566554
No 417
>PRK06197 short chain dehydrogenase; Provisional
Probab=29.89 E-value=5.3e+02 Score=27.34 Aligned_cols=64 Identities=5% Similarity=0.080 Sum_probs=40.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEecccccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQHF 149 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~nv~vt~~Da~~f 149 (730)
.+.+|| +.-|.|+...++++.|... ...|+..+.+..+...+.+.+... +-..+.+...|....
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~-------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAK-------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCH
Confidence 355677 4455678888888887652 247888888888776665555432 223455666665553
No 418
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=29.82 E-value=3.5e+02 Score=29.72 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=32.5
Q ss_pred cCCCCCCEEEeecCCc--chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP--GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+|+. |+.++|||..++ +.+++.-.+...... ++.+|...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G----------~~~v~~~~s~~k~~~----~~~lGAd~ 190 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG----------ATVVAVVSSSEKLEL----LKELGADH 190 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC----------CcEEEEecCHHHHHH----HHhcCCCE
Confidence 3578899999887654 456777777643 256666666555543 45677654
No 419
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=29.71 E-value=2.4e+02 Score=30.29 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|.+||=.+ .|+....++++.... +...|++.+.+..|...+. .+|..
T Consensus 163 ~~~~g~~vlI~g--~g~~g~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (345)
T cd08286 163 KVKPGDTVAIVG--AGPVGLAALLTAQLY------SPSKIIMVDLDDNRLEVAK----KLGAT 213 (345)
T ss_pred CCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHH----HhCCC
Confidence 467888887743 355544444443321 1246888999998877654 35653
No 420
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=29.36 E-value=2.8e+02 Score=29.24 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=28.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
.+.+++.||=.++ +|+....++++.... ...|++.+.+..+...+..
T Consensus 142 ~~~~~~~vlI~g~-~g~ig~~~~~~a~~~-------G~~vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 142 KPKPGETVVVSAA-AGAVGSVVGQIAKLL-------GARVVGIAGSDEKCRWLVE 188 (329)
T ss_pred CCCCCCEEEEecC-cchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHh
Confidence 4577888886553 344444444443321 2478999988888776643
No 421
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=29.36 E-value=2.7e+02 Score=29.77 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=30.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
..+++|.+||=. + .|+....+++++... +-..|++.+.+.+|...+.
T Consensus 163 ~~~~~~~~vlI~-g-~g~vg~~~~~~a~~~------g~~~v~~~~~~~~~~~~~~ 209 (344)
T cd08284 163 AQVRPGDTVAVI-G-CGPVGLCAVLSAQVL------GAARVFAVDPVPERLERAA 209 (344)
T ss_pred cCCccCCEEEEE-C-CcHHHHHHHHHHHHc------CCceEEEEcCCHHHHHHHH
Confidence 345788888877 3 567666665655531 1136889888888876543
No 422
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.05 E-value=3.7e+02 Score=27.91 Aligned_cols=50 Identities=18% Similarity=0.022 Sum_probs=28.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+|+.||=.++ +|+....++++.... ...|++.+.+..+...++ .+|..
T Consensus 130 ~~~~~~vli~g~-~~~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~~----~~g~~ 179 (305)
T cd08270 130 PLLGRRVLVTGA-SGGVGRFAVQLAALA-------GAHVVAVVGSPARAEGLR----ELGAA 179 (305)
T ss_pred CCCCCEEEEECC-CcHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH----HcCCc
Confidence 345888886655 333333333333221 246888888888877663 35654
No 423
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=28.99 E-value=1.1e+02 Score=32.41 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=37.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
-.+|+.|||-.+|+|....+ |..++ -..+++|+++.-+..+...+.+.
T Consensus 220 s~~~diVlDpf~GsGtt~~a-a~~~~----------r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIA-AKNLG----------RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHH-HHHcC----------CceEEEecCHHHHHHHHHHHHhh
Confidence 46899999999999975444 44432 46788999999999888877654
No 424
>PRK06139 short chain dehydrogenase; Provisional
Probab=28.82 E-value=5e+02 Score=28.42 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=41.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |+|+....++..+... ...|+..+.+..++..+...++..+. .+.+...|..+
T Consensus 7 ~k~vlITG-As~GIG~aia~~la~~-------G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVVITG-ASSGIGQATAEAFARR-------GARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTD 67 (330)
T ss_pred CCEEEEcC-CCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCC
Confidence 45666444 5677778888877652 35788999999999888887776664 34444455443
No 425
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=28.39 E-value=2.5e+02 Score=29.72 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|++||=..+ +-|..+.+++..+ ...|++.+.+..+...+ +.+|..
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~----------G~~v~~~~~~~~~~~~~----~~~g~~ 187 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKAL----------GAKLIGTVGSAQKAQRA----KKAGAW 187 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH----HHCCCC
Confidence 4678888886532 2333344444443 24588888888887766 346653
No 426
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=28.38 E-value=2.1e+02 Score=30.79 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 77 QPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 77 ~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+|++||=.++|+ |..+.++|..++ ...|++.+.+..+..++. .+|..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~----~lg~~ 210 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG---------ARHVVITDVNEYRLELAR----KMGAT 210 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4788888754432 334455555432 125777788887776553 45653
No 427
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.73 E-value=5.6e+02 Score=26.05 Aligned_cols=60 Identities=3% Similarity=0.050 Sum_probs=38.5
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.++|=.++ .|+....++..+... ...|++.+.+..++..+...++..+ ..+.+...|...
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEE-------GANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 45665555 556677777777642 3479999999888877766665443 345555555543
No 428
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=27.60 E-value=2.9e+02 Score=29.79 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=30.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
..+++|++||= .|.|+....+++..... +...|++.|.+..+...+. ++|.
T Consensus 170 ~~~~~g~~vlI--~g~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~----~~g~ 220 (350)
T cd08256 170 ANIKFDDVVVL--AGAGPLGLGMIGAARLK------NPKKLIVLDLKDERLALAR----KFGA 220 (350)
T ss_pred cCCCCCCEEEE--ECCCHHHHHHHHHHHHc------CCcEEEEEcCCHHHHHHHH----HcCC
Confidence 45678888877 33455544433333221 1246889999888876543 4565
No 429
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.40 E-value=4.9e+02 Score=27.22 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=24.3
Q ss_pred CCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
|..+|=.+|+.| +....+++.+... ...|+.++.+
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~-------G~~vil~~r~ 41 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE-------GAELAFTYQN 41 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC-------CCEEEEEecc
Confidence 567888888763 7777788877642 2467767766
No 430
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=27.11 E-value=3.5e+02 Score=28.99 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=31.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
+.++++++||=.+ +|+....+++++... ...|++.+.+..|...+. .+|.
T Consensus 159 ~~~~~~~~vlV~g--~g~iG~~~~~~a~~~-------G~~vi~~~~~~~~~~~~~----~~g~ 208 (333)
T cd08296 159 SGAKPGDLVAVQG--IGGLGHLAVQYAAKM-------GFRTVAISRGSDKADLAR----KLGA 208 (333)
T ss_pred cCCCCCCEEEEEC--CcHHHHHHHHHHHHC-------CCeEEEEeCChHHHHHHH----HcCC
Confidence 3567888888876 355444444433321 236899999988877663 4565
No 431
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=27.10 E-value=4.2e+02 Score=27.75 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=27.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
..++++..||=.++ +|+....+++++... ...|++.+.+.++...+
T Consensus 138 ~~~~~~~~vlI~g~-~~~~g~~~~~la~~~-------g~~v~~~~~~~~~~~~~ 183 (324)
T cd08244 138 ATLTPGDVVLVTAA-AGGLGSLLVQLAKAA-------GATVVGAAGGPAKTALV 183 (324)
T ss_pred cCCCCCCEEEEEcC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHH
Confidence 35678888876654 344433333333321 24688999888887765
No 432
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.83 E-value=4.2e+02 Score=27.80 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=63.5
Q ss_pred CCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|..+|=.+|+ .++....+++.+... ...|+.+..+......+.+..+.++. ......|......+. .
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~-------G~~V~l~~r~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~--~- 77 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAA-------GAELAFTYQGDALKKRVEPLAAELGA--FVAGHCDVTDEASID--A- 77 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEcCchHHHHHHHHHHHhcCC--ceEEecCCCCHHHHH--H-
Confidence 5677777876 478888888888652 24666665543222333333333332 233445544321110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
............|.++..+--... +.+ ...++.|.. .-..++ .-...+++.++.+++.+|++|
T Consensus 78 --------~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~---~~~vN~-~~~~~l~~~~~~~~~~~g~Iv 145 (272)
T PRK08159 78 --------VFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTM---TMDISV-YSFTAVAQRAEKLMTDGGSIL 145 (272)
T ss_pred --------HHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHH---HHhHHH-HHHHHHHHHHHHhcCCCceEE
Confidence 000011123568988886532211 111 112233332 111111 123446666777777789888
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
..+
T Consensus 146 ~is 148 (272)
T PRK08159 146 TLT 148 (272)
T ss_pred EEe
Confidence 664
No 433
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=26.48 E-value=2.7e+02 Score=29.00 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=31.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~-VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
...+++|..||=. + +|+....++++.... ... |++...+.++..++ +.+|.
T Consensus 124 ~~~~~~~~~vlI~-g-~g~vg~~~~~la~~~-------g~~~v~~~~~~~~~~~~~----~~~g~ 175 (312)
T cd08269 124 RGWIRAGKTVAVI-G-AGFIGLLFLQLAAAA-------GARRVIAIDRRPARLALA----RELGA 175 (312)
T ss_pred hcCCCCCCEEEEE-C-CCHHHHHHHHHHHHc-------CCcEEEEECCCHHHHHHH----HHhCC
Confidence 3456788888887 3 466555555554431 234 88888887777633 44565
No 434
>PRK12742 oxidoreductase; Provisional
Probab=26.47 E-value=5.4e+02 Score=25.67 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=25.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLL 127 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L 127 (730)
+.+||=. .|.|+....+++.|... ...|+.... +..++..+
T Consensus 6 ~k~vlIt-GasggIG~~~a~~l~~~-------G~~v~~~~~~~~~~~~~l 47 (237)
T PRK12742 6 GKKVLVL-GGSRGIGAAIVRRFVTD-------GANVRFTYAGSKDAAERL 47 (237)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHHC-------CCEEEEecCCCHHHHHHH
Confidence 5677744 45778888888887652 235666544 44454433
No 435
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.19 E-value=3.8e+02 Score=27.82 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|+.||=.+| +|+....++++.... ...|++...+.++...+. .+|..
T Consensus 139 ~~~~g~~vlV~ga-~g~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~~----~~g~~ 189 (320)
T cd08243 139 GLQPGDTLLIRGG-TSSVGLAALKLAKAL-------GATVTATTRSPERAALLK----ELGAD 189 (320)
T ss_pred CCCCCCEEEEEcC-CChHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH----hcCCc
Confidence 4678888886554 444433333333321 245888888888766553 36654
No 436
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=26.10 E-value=1.3e+02 Score=32.74 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
.++|||.||=-.| -|+.-+.+.+++... ..++||.-...+..+.+++
T Consensus 143 ~vkpGhtVlvhaA-AGGVGlll~Ql~ra~-------~a~tI~~asTaeK~~~ake 189 (336)
T KOG1197|consen 143 NVKPGHTVLVHAA-AGGVGLLLCQLLRAV-------GAHTIATASTAEKHEIAKE 189 (336)
T ss_pred CCCCCCEEEEEec-cccHHHHHHHHHHhc-------CcEEEEEeccHHHHHHHHh
Confidence 6899999996544 455555555555431 3578888887777766554
No 437
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=25.92 E-value=4.8e+02 Score=24.64 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl 131 (730)
.+.+||=++| |+-+..++..|... +-..|+-...+.+|+..|.+.+
T Consensus 11 ~~~~vlviGa--Gg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIGA--GGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TTSEEEEESS--SHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHc
Confidence 4778998988 55555566666542 2356777889999998887766
No 438
>PRK07806 short chain dehydrogenase; Provisional
Probab=25.87 E-value=5.6e+02 Score=25.80 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=62.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~-~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||-.+ |.|+...+++..|... .-.|++.+.+. .+...+...++..+ .++.+...|..+...+. ..
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~-------G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~--~~ 74 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGA-------GAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVA--AL 74 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHC-------CCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHH--HH
Confidence 45677655 4567778888877642 23677777653 45555555454433 23555556655421110 00
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
..........+|.|+..+. .+... +..|......+ ..-...+++.+.+.++.+|++|+.+
T Consensus 75 ---------~~~~~~~~~~~d~vi~~ag---~~~~~-----~~~~~~~~~vn-~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 75 ---------MDTAREEFGGLDALVLNAS---GGMES-----GMDEDYAMRLN-RDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred ---------HHHHHHhCCCCcEEEECCC---CCCCC-----CCCcceeeEee-eHHHHHHHHHHHhhccCCceEEEEe
Confidence 0000011135788876542 11100 00111100111 1233567777887777778888763
No 439
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.80 E-value=2.6e+02 Score=28.88 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 78 PDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 78 pg~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
.+..||=.+|+ .++....+++.|... ...|+..+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~-------G~~v~l~~r~ 42 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ-------GAEVVLTGFG 42 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC-------CCEEEEecCc
Confidence 35688888885 678888888887652 3478887765
No 440
>PRK05876 short chain dehydrogenase; Provisional
Probab=25.74 E-value=7.2e+02 Score=25.99 Aligned_cols=61 Identities=7% Similarity=-0.004 Sum_probs=39.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|..||=.+| .|+...++++.|... .-.|+..|.+..++..+...++..+. .+.+...|...
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~-------G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARR-------GARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCC
Confidence 556775555 567788888887652 24688889988887766665554443 34445555544
No 441
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.64 E-value=1.7e+02 Score=26.19 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCe-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 87 AAPGSKTFQLLEIIHQSTNPGALPNG-MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 87 AAPGsKT~qLae~L~~~~~~~~~p~G-~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+|-|..+.++++.|.. .+ .|+.+|.++.++..+.. .+ +.+..+|+..
T Consensus 4 ~G~g~~~~~i~~~L~~--------~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~ 51 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--------GGIDVVVIDRDPERVEELRE----EG---VEVIYGDATD 51 (116)
T ss_dssp ES-SHHHHHHHHHHHH--------TTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTS
T ss_pred EcCCHHHHHHHHHHHh--------CCCEEEEEECCcHHHHHHHh----cc---cccccccchh
Confidence 4778899999999986 35 89999999999877654 33 5677788776
No 442
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=25.60 E-value=21 Score=41.73 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=14.7
Q ss_pred EEeecCCcchHHHHHHHH
Q 004787 82 VLDMCAAPGSKTFQLLEI 99 (730)
Q Consensus 82 VLDmCAAPGsKT~qLae~ 99 (730)
.-||||||||++-.++-.
T Consensus 271 FaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVLWR 288 (845)
T ss_pred HHhhhcCCCccchhhhhh
Confidence 458999999999887643
No 443
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=25.50 E-value=7.2e+02 Score=25.23 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=39.2
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~nv~vt~~Da~~ 148 (730)
..||=.++ .|+...+++..|... .-.|+.+|.+..+...+...++.. +...+.+...|..+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~-------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEE-------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 45666664 577788888877652 347889999888777666655432 22345566666554
No 444
>PRK06484 short chain dehydrogenase; Validated
Probab=25.40 E-value=4.6e+02 Score=30.13 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=31.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
.|..+|=. -|.|+....+++.|... ...|+..+.+..++..+...
T Consensus 268 ~~k~~lIt-Gas~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~ 312 (520)
T PRK06484 268 SPRVVAIT-GGARGIGRAVADRFAAA-------GDRLLIIDRDAEGAKKLAEA 312 (520)
T ss_pred CCCEEEEE-CCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH
Confidence 45666644 45677788888877652 34899999988887766543
No 445
>PRK06198 short chain dehydrogenase; Provisional
Probab=25.35 E-value=6.2e+02 Score=25.72 Aligned_cols=61 Identities=2% Similarity=0.046 Sum_probs=37.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~-VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=. .|.|+...++++.+... ... |++.+.+......+...++..+. .+.+...|...
T Consensus 6 ~k~vlIt-Ga~g~iG~~la~~l~~~-------G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 67 (260)
T PRK06198 6 GKVALVT-GGTQGLGAAIARAFAER-------GAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLSD 67 (260)
T ss_pred CcEEEEe-CCCchHHHHHHHHHHHC-------CCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCC
Confidence 5567744 45677888888887642 234 88999887766555544543332 34445555543
No 446
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=25.34 E-value=5.1e+02 Score=31.50 Aligned_cols=62 Identities=6% Similarity=0.119 Sum_probs=40.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR-lg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+....++..|... ...|++.|.+..++..+...+.. .+...+.....|..+
T Consensus 414 gkvvLVTG-asggIG~aiA~~La~~-------Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 414 RRVAFVTG-GAGGIGRETARRLAAE-------GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD 476 (676)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 55666444 5677788888877652 35899999998887776655542 333345555566544
No 447
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=24.85 E-value=3.9e+02 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=28.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
..+++|.+||-.+ + |+....+++++... +...|++.+.+..+...+
T Consensus 178 ~~~~~g~~vLI~g-~-g~vG~a~i~lak~~------G~~~Vi~~~~~~~~~~~~ 223 (363)
T cd08279 178 ARVRPGDTVAVIG-C-GGVGLNAIQGARIA------GASRIIAVDPVPEKLELA 223 (363)
T ss_pred cCCCCCCEEEEEC-C-CHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHH
Confidence 3567899999883 3 55443333333321 122488998888887765
No 448
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=24.75 E-value=3.7e+02 Score=28.62 Aligned_cols=47 Identities=15% Similarity=0.007 Sum_probs=27.5
Q ss_pred CCCEEEeecCCcch---HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 78 PDHFVLDMCAAPGS---KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 78 pg~~VLDmCAAPGs---KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++..||=.-.|+|+ .++|+|..+ ...|++.+.+..|...++. +|...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~----------G~~vi~~~~~~~~~~~~~~----~g~~~ 191 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD----------GIKVINIVRRKEQVDLLKK----IGAEY 191 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH----cCCcE
Confidence 44445433234444 445555543 2468999999988877643 66543
No 449
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=24.44 E-value=4.7e+02 Score=27.87 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=35.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|....+++..|... .-.|++...+......+.+.....+. .++.+...|...
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 67 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFR-------GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD 67 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHC-------CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC
Confidence 56677555 6788899999888652 23677776665544333222211121 345566666554
No 450
>PRK06500 short chain dehydrogenase; Provisional
Probab=23.79 E-value=4.9e+02 Score=26.15 Aligned_cols=42 Identities=7% Similarity=-0.058 Sum_probs=27.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
+.+||= ..|.|+...++++.|... .-.|++.+.+...+..+.
T Consensus 6 ~k~vlI-tGasg~iG~~la~~l~~~-------g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 6 GKTALI-TGGTSGIGLETARQFLAE-------GARVAITGRDPASLEAAR 47 (249)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHC-------CCEEEEecCCHHHHHHHH
Confidence 445554 445677788888877652 247888888876655443
No 451
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=23.56 E-value=1.8e+02 Score=33.47 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecc-------cccCCCcccCCCCCC
Q 004787 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHE-------AQHFPGCRANKNFSS 160 (730)
Q Consensus 88 APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~D-------a~~fp~~~~~~~~~~ 160 (730)
|-|..-+-+|.+.... .-.|+++|+++++...+.. |.. .+..-+ +..--.++...+
T Consensus 16 GLGYVGLPlA~~fA~~-------G~~ViG~DIn~~~Vd~ln~-----G~~--~i~e~~~~~~v~~~v~~g~lraTtd--- 78 (436)
T COG0677 16 GLGYVGLPLAAAFASA-------GFKVIGVDINQKKVDKLNR-----GES--YIEEPDLDEVVKEAVESGKLRATTD--- 78 (436)
T ss_pred ccccccHHHHHHHHHc-------CCceEeEeCCHHHHHHHhC-----Ccc--eeecCcHHHHHHHHHhcCCceEecC---
Confidence 5666667776666542 3579999999999987643 211 111110 000001110000
Q ss_pred CCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004787 161 ASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (730)
Q Consensus 161 ~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p 240 (730)
+ ..-..-|.+++=||---++ .+.||+ ..-.+-.+.....|++|-.+|+ --|..|
T Consensus 79 --------~--~~l~~~dv~iI~VPTPl~~--~~~pDl-------------s~v~~aa~sIa~~L~kG~LVIl-EST~~P 132 (436)
T COG0677 79 --------P--EELKECDVFIICVPTPLKK--YREPDL-------------SYVESAARSIAPVLKKGDLVIL-ESTTPP 132 (436)
T ss_pred --------h--hhcccCCEEEEEecCCcCC--CCCCCh-------------HHHHHHHHHHHHhcCCCCEEEE-ecCCCC
Confidence 0 0012457666655422222 255664 1113345556778999766666 467889
Q ss_pred CCcHHHHHHHHHH
Q 004787 241 VENEAVVAEILRK 253 (730)
Q Consensus 241 ~ENEaVV~~~L~~ 253 (730)
--.|.++..+|+.
T Consensus 133 GTTe~v~~plle~ 145 (436)
T COG0677 133 GTTEEVVKPLLEE 145 (436)
T ss_pred CcHHHHHHHHHhh
Confidence 9999999999987
No 452
>PRK05875 short chain dehydrogenase; Provisional
Probab=23.10 E-value=7.2e+02 Score=25.57 Aligned_cols=62 Identities=5% Similarity=-0.034 Sum_probs=40.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...++++.|... .-.|++.+.+..+...+...+...+ ..++.+...|..+
T Consensus 7 ~k~vlItG-asg~IG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTG-GGSGIGKGVAAGLVAA-------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 56777666 4577888888877642 2378999988877766655554432 2345566566544
No 453
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=23.08 E-value=2.5e+02 Score=30.32 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred CeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004787 111 NGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (730)
Q Consensus 111 ~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (730)
.-+++++++.++=...|+.++. +..++.|...|+..-....++. ..+=-.||+|||.--.+
T Consensus 110 qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP-----------------~erRglVLIDPPfE~~~ 170 (279)
T COG2961 110 QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPP-----------------KERRGLVLIDPPFELKD 170 (279)
T ss_pred hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCC-----------------CCcceEEEeCCCccccc
Confidence 5689999999999999998876 5678899988876532221111 12335799999943322
Q ss_pred ccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 191 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 191 tlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
-.. .+ .+-|..+++--. +|+. |=+.|+-+-.-+..++++..
T Consensus 171 eY~---------------rv----v~~l~~~~kRf~-~g~y----aiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 171 EYQ---------------RV----VEALAEAYKRFA-TGTY----AIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred HHH---------------HH----HHHHHHHHHhhc-CceE----EEEEeecchHHHHHHHHHHh
Confidence 110 11 222334443332 3533 45789999999999998754
No 454
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.05 E-value=6.6e+02 Score=25.68 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=40.4
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~ 148 (730)
|..+|=.+| .|+...+++..+... ...|++.+.+..++..+.+.+.... ...+.+...|..+
T Consensus 8 ~k~~lItGa-s~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 8 GRVAVVTGG-SSGIGLATVELLLEA-------GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 556776665 456667777777642 3579999999988887776665432 2245555556554
No 455
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=23.02 E-value=3.1e+02 Score=29.25 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=27.2
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.+.++.+||=.++| +....+++++... +...|++.+.+..+...+
T Consensus 164 ~~~~~~~vlI~g~~--~vg~~~~~~a~~~------g~~~v~~~~~~~~~~~~~ 208 (340)
T cd05284 164 YLDPGSTVVVIGVG--GLGHIAVQILRAL------TPATVIAVDRSEEALKLA 208 (340)
T ss_pred cCCCCCEEEEEcCc--HHHHHHHHHHHHh------CCCcEEEEeCCHHHHHHH
Confidence 35678888887633 3433333433321 114788888888887765
No 456
>PRK09186 flagellin modification protein A; Provisional
Probab=23.01 E-value=4.5e+02 Score=26.62 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |+|+...+++..|... ...|+..+.+..++..+...+... +...+.++..|..+
T Consensus 4 ~k~vlItG-as~giG~~~a~~l~~~-------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILITG-AGGLIGSALVKAILEA-------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 45566555 4677888888888652 347888898888877776665432 33334444556554
No 457
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.75 E-value=7.4e+02 Score=26.34 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=26.1
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT 131 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl 131 (730)
+|.=+++ |.....+|..+... .-.|+..|.+++++..+...+
T Consensus 6 kI~vIGa--G~mG~~iA~~la~~-------G~~V~l~d~~~~~~~~~~~~i 47 (292)
T PRK07530 6 KVGVIGA--GQMGNGIAHVCALA-------GYDVLLNDVSADRLEAGLATI 47 (292)
T ss_pred EEEEECC--cHHHHHHHHHHHHC-------CCeEEEEeCCHHHHHHHHHHH
Confidence 3444455 44445555555431 237999999999988765544
No 458
>PRK07060 short chain dehydrogenase; Provisional
Probab=22.63 E-value=6.9e+02 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.+.++| +..|.|+...+++..+... .-.|+.++.+.+++..+.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~-------g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQR-------GARVVAAARNAAALDRLA 50 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHH
Confidence 355677 4555677788888877642 236889998887765443
No 459
>PRK07024 short chain dehydrogenase; Provisional
Probab=22.50 E-value=5.2e+02 Score=26.40 Aligned_cols=58 Identities=7% Similarity=-0.031 Sum_probs=36.7
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+||= .-|.|+...++++.|... .-.|+..+.+..++..+...+...+ ++.+...|..+
T Consensus 4 ~vlI-tGas~gIG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVFI-TGASSGIGQALAREYARQ-------GATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRD 61 (257)
T ss_pred EEEE-EcCCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCC
Confidence 4444 445778888888888652 2478899998887766555443222 45555666554
No 460
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=22.47 E-value=3e+02 Score=28.91 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=16.9
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEII 100 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L 100 (730)
..+++|.+||=.++ +-|..++++|..+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~ 163 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAAR 163 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHC
Confidence 46788999887754 2344455555554
No 461
>PRK05866 short chain dehydrogenase; Provisional
Probab=22.46 E-value=4e+02 Score=28.31 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=40.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||= ..|.|+....+++.+... .-.|++.+.+..++..+...+...+. .+.+...|..+
T Consensus 40 ~k~vlI-tGasggIG~~la~~La~~-------G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRILL-TGASSGIGEAAAEQFARR-------GATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSD 100 (293)
T ss_pred CCEEEE-eCCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 355664 445677888888887652 34799999999888877776655443 24445555543
No 462
>PRK05650 short chain dehydrogenase; Provisional
Probab=22.41 E-value=8.5e+02 Score=25.04 Aligned_cols=59 Identities=5% Similarity=-0.058 Sum_probs=38.6
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+||= ..|.|+....++..|... .-.|++.+.+..++..+...++..+. ++.+...|..+
T Consensus 2 ~vlV-tGasggIG~~la~~l~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMI-TGAASGLGRAIALRWARE-------GWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRD 60 (270)
T ss_pred EEEE-ecCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 3453 345777788888877652 34788999998888777776665543 34555556544
No 463
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.30 E-value=8.5e+02 Score=24.91 Aligned_cols=63 Identities=2% Similarity=-0.059 Sum_probs=35.2
Q ss_pred CCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCC-----------HHHHHHHHHHHHHcCCCceEEEecc
Q 004787 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLD-----------VQRCNLLIHQTKRMCTANLIVTNHE 145 (730)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d-----------~~Rl~~L~~nlkRlg~~nv~vt~~D 145 (730)
.|.+||=.+|.. |+...+++..+... ...|+..+.. ......+.+.+++.+. .+.+...|
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~-------G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D 76 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEA-------GADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELD 76 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHC-------CCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcC
Confidence 366788888764 57777777777642 2356655421 2333344455555553 35555555
Q ss_pred ccc
Q 004787 146 AQH 148 (730)
Q Consensus 146 a~~ 148 (730)
...
T Consensus 77 ~~~ 79 (256)
T PRK12859 77 LTQ 79 (256)
T ss_pred CCC
Confidence 543
No 464
>PRK06125 short chain dehydrogenase; Provisional
Probab=22.16 E-value=6.8e+02 Score=25.53 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=39.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~ 147 (730)
+.+||=.+ |.|+....++..+... ...|++.+.+..++..+...+.......+.+...|..
T Consensus 7 ~k~vlItG-~~~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 67 (259)
T PRK06125 7 GKRVLITG-ASKGIGAAAAEAFAAE-------GCHLHLVARDADALEALAADLRAAHGVDVAVHALDLS 67 (259)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCC
Confidence 55666656 4566778888777642 3489999999888877776665443234445545543
No 465
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=22.12 E-value=5.8e+02 Score=27.38 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=27.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
+++.+||-.+ +|+....++++.... +...|++.+.+..|...+
T Consensus 174 ~~~~~vlI~g--~g~vg~~~~~~a~~~------G~~~v~~~~~~~~~~~~~ 216 (350)
T cd08240 174 VADEPVVIIG--AGGLGLMALALLKAL------GPANIIVVDIDEAKLEAA 216 (350)
T ss_pred CCCCEEEEEC--CcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHH
Confidence 4788898883 466555554444431 123688889888888766
No 466
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.08 E-value=4.7e+02 Score=27.92 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=30.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
..+++|..||=.+ .|+....++++.... +...|++.+.+..+..++. .+|.
T Consensus 164 ~~~~~g~~vlI~g--~g~vg~~~~~lak~~------G~~~v~~~~~~~~~~~~~~----~~ga 214 (345)
T cd08287 164 AGVRPGSTVVVVG--DGAVGLCAVLAAKRL------GAERIIAMSRHEDRQALAR----EFGA 214 (345)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHH----HcCC
Confidence 4567888887743 455544444443321 1235899998887765543 4665
No 467
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=21.85 E-value=4.9e+02 Score=27.93 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=25.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.++|.+||-. + .|+....++++.... +...|++.+.+..+..++.
T Consensus 159 ~~~g~~vlI~-~-~g~vg~~a~~la~~~------G~~~v~~~~~~~~~~~~~~ 203 (340)
T TIGR00692 159 PISGKSVLVT-G-AGPIGLMAIAVAKAS------GAYPVIVSDPNEYRLELAK 203 (340)
T ss_pred CCCCCEEEEE-C-CCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHH
Confidence 5688888884 3 354433333333221 1124788888888877553
No 468
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=21.76 E-value=5.6e+02 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=18.7
Q ss_pred CCCEEEeecCC-cchHHHHHHHHHhc
Q 004787 78 PDHFVLDMCAA-PGSKTFQLLEIIHQ 102 (730)
Q Consensus 78 pg~~VLDmCAA-PGsKT~qLae~L~~ 102 (730)
.|..||=.+|+ .++.-..+++.+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~ 30 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA 30 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH
Confidence 36678888875 57888888888764
No 469
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=21.67 E-value=6.3e+02 Score=25.86 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.+++|..||=.++ +|+....++++.... ...|++.+.+..+...+
T Consensus 133 ~~~~g~~vlI~g~-~g~~g~~~~~~a~~~-------g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 133 PVKPGDTVLVHAA-AGGVGLLLTQWAKAL-------GATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCCCCEEEEEcC-CchHHHHHHHHHHHc-------CCEEEEEcCCHHHHHHH
Confidence 4678888886654 344433333333221 24688888888887765
No 470
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.54 E-value=9.7e+02 Score=27.03 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHhhc---ccccCcEEEcccccc-chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC
Q 004787 44 LERFHKFLKL---ENEIGNITRQEAVSM-VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119 (730)
Q Consensus 44 l~~~~~~l~~---~~~~G~i~~Qd~~Sm-lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~ 119 (730)
+.....||.. .+..|.+.+-+.... .+.-...+.++.+||=.++ .|+....+++.|... ...|+++|.
T Consensus 171 ~~~~~~~l~s~~~a~~~g~~i~~~~~~~~~~~~~~~~~~g~~vlItGa-sggIG~~la~~l~~~-------Ga~vi~~~~ 242 (450)
T PRK08261 171 LESTLRFFLSPRSAYVSGQVVRVGAADAAPPADWDRPLAGKVALVTGA-ARGIGAAIAEVLARD-------GAHVVCLDV 242 (450)
T ss_pred HHHHHHHhcCCccCCccCcEEEecCCcccCCCCcccCCCCCEEEEecC-CCHHHHHHHHHHHHC-------CCEEEEEeC
Confidence 3444445544 233455544433322 2222222345777777665 566778888877642 357888887
Q ss_pred C
Q 004787 120 D 120 (730)
Q Consensus 120 d 120 (730)
.
T Consensus 243 ~ 243 (450)
T PRK08261 243 P 243 (450)
T ss_pred C
Confidence 4
No 471
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=21.52 E-value=7.8e+02 Score=26.30 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=38.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... ...|+..+.+..++..+...+... ..++.+...|...
T Consensus 6 ~k~vlVTG-as~gIG~~~a~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~ 66 (322)
T PRK07453 6 KGTVIITG-ASSGVGLYAAKALAKR-------GWHVIMACRNLKKAEAAAQELGIP-PDSYTIIHIDLGD 66 (322)
T ss_pred CCEEEEEc-CCChHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHhhcc-CCceEEEEecCCC
Confidence 45566555 5677888888877652 247888899888877665554321 2245555555544
No 472
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=21.52 E-value=1.8e+02 Score=29.58 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEecccccCCCcccCCCCCCCCccccc
Q 004787 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ-TKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIE 167 (730)
Q Consensus 89 PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n-lkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~ 167 (730)
+++.-..+++.+... ...|+.++.+.+.+....+. .+..+.. +...|...-..+. . ..
T Consensus 5 s~GiG~aia~~l~~~-------Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~~~~v~--~---------~~ 63 (241)
T PF13561_consen 5 SSGIGRAIARALAEE-------GANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSDEESVE--A---------LF 63 (241)
T ss_dssp TSHHHHHHHHHHHHT-------TEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTSHHHHH--H---------HH
T ss_pred CCChHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcchHHHH--H---------HH
Confidence 467777888887753 57899999999986443333 3445533 3555554311110 0 00
Q ss_pred ccccccc-ccccEEEecCCCCCCCccccC-hhh-hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 168 SESNMGQ-LLFDRVLCDVPCSGDGTLRKA-PDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 168 ~~~~~~~-~~FDrVL~DvPCSGdGtlrk~-pd~-~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....... +.+|.++..+.-+......+. .+. +..|...-. ....-...+++.++.+++.+|.+|+.+
T Consensus 64 ~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 64 DEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFD-INVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp HHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 0111123 678988775422111000000 111 122221111 111234567777778889999988754
No 473
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=21.50 E-value=8e+02 Score=24.86 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=40.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+.+||=.+| .|+....++..+... .-.|+.++.+...+..+...++..+. .+.+...|..+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGA-------GAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHc-------CCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 3667776664 566777777776542 34799999998877777666665543 35555555543
No 474
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=21.48 E-value=4.1e+02 Score=28.37 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCCCCCEEEeecCCc--chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 75 DVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 75 d~~pg~~VLDmCAAP--GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.++++++||=.++++ |.-++++|..+ .-.|++...+..+...+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~----------g~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM----------GLRVIAIDVGDEKLELA 206 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC----------CCeEEEEeCCHHHHHHH
Confidence 678899998877653 33344444443 23688888888887765
No 475
>PRK06940 short chain dehydrogenase; Provisional
Probab=21.47 E-value=5.8e+02 Score=26.67 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=36.6
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.||=.+ | |+...++++.|.. ...|+..|.+..++..+.+.++..+. .+.+...|...
T Consensus 4 ~~lItG-a-~gIG~~la~~l~~--------G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 60 (275)
T PRK06940 4 VVVVIG-A-GGIGQAIARRVGA--------GKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSS 60 (275)
T ss_pred EEEEEC-C-ChHHHHHHHHHhC--------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCC
Confidence 344334 3 6788889888852 35789999988877766666654432 34455556544
No 476
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=21.35 E-value=3.5e+02 Score=28.75 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 79 DHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 79 g~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
|++||=..| +-|.-+.|+|..++ ...|++...+..+...+ +.+|...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~---------G~~vi~~~~~~~~~~~l----~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT---------GLTVIATASRPESQEWV----LELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC---------CCEEEEEcCcHHHHHHH----HHcCCCE
Confidence 888887654 34444555555431 14688888777776655 3467643
No 477
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.28 E-value=8.4e+02 Score=24.47 Aligned_cols=61 Identities=2% Similarity=-0.067 Sum_probs=36.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvA-nD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..+... ...|+. .+.+......+...++..+. ++.+...|...
T Consensus 4 ~~~vlItG-a~g~iG~~~a~~l~~~-------g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (250)
T PRK08063 4 GKVALVTG-SSRGIGKAIALRLAEE-------GYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGD 65 (250)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 45666444 5688888888888752 224554 45666666666666655542 35555556544
No 478
>PRK07985 oxidoreductase; Provisional
Probab=21.20 E-value=6.2e+02 Score=26.83 Aligned_cols=62 Identities=6% Similarity=-0.076 Sum_probs=36.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d--~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+.+||-.+| .|+...++++.|... ...|+..+.+ ......+...+...+. .+.+...|...
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~-------G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 111 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYARE-------GADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSD 111 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHC-------CCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCC
Confidence 3567887775 567778888887652 3457776653 3344455544444443 34455556544
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=21.01 E-value=4.4e+02 Score=26.92 Aligned_cols=43 Identities=7% Similarity=0.055 Sum_probs=30.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.|.+||=.+| .|+...+++..+... ...|++++.+..++..+.
T Consensus 6 ~~~~vlItGa-sggIG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 6 AGRVAVITGG-GSGIGLATARRLAAE-------GATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHHH
Confidence 3678887776 467788888887642 347888898877665443
No 480
>PRK08628 short chain dehydrogenase; Provisional
Probab=20.77 E-value=7.4e+02 Score=25.12 Aligned_cols=60 Identities=3% Similarity=-0.020 Sum_probs=35.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+| .|+...+++..|... ...|+.++.+.... .+...++..+. ++.+...|...
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~-------G~~v~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~D~~~ 66 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEE-------GAIPVIFGRSAPDD-EFAEELRALQP-RAEFVQVDLTD 66 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHc-------CCcEEEEcCChhhH-HHHHHHHhcCC-ceEEEEccCCC
Confidence 446665554 577778888777642 24677778777666 33344444443 35555555544
No 481
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.62 E-value=8.7e+02 Score=24.36 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=63.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvA-nD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||=.+ |.|+...+++..|... ...|+. ...+..........++..+. ++.+...|......+. .
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~-------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~--~- 73 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKE-------GSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCE--T- 73 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHH--H-
Confidence 45777655 5677788888877642 234444 33444444444444444443 3444445544321110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccC-hhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~-pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...........+|.|+.-+.....+.+... .+.|..+-..+. .....++..+++.++.+|++|+.+.
T Consensus 74 --------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~----~~~~~~~~~~~~~~~~~~~iv~~sS 141 (252)
T PRK06077 74 --------LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDF----KSVIYCSQELAKEMREGGAIVNIAS 141 (252)
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhC----HHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 000000112467999885543333322211 112222111111 1234456666777777899998754
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
.
T Consensus 142 ~ 142 (252)
T PRK06077 142 V 142 (252)
T ss_pred h
Confidence 3
No 482
>PRK07041 short chain dehydrogenase; Provisional
Probab=20.62 E-value=6.4e+02 Score=25.07 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=34.1
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 87 AAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 87 AAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|+|+...+++..|... .-.|++++.+..++..+...++. + .++.+...|...
T Consensus 4 Gas~~iG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~ 56 (230)
T PRK07041 4 GGSSGIGLALARAFAAE-------GARVTIASRSRDRLAAAARALGG-G-APVRTAALDITD 56 (230)
T ss_pred cCCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCC
Confidence 46677888888877652 34789999988877666554431 2 335555555544
No 483
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.61 E-value=5.4e+02 Score=27.43 Aligned_cols=48 Identities=23% Similarity=0.148 Sum_probs=27.1
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
..+++|.+||=.++ +-|.-++++|..++ ..|++.+.+. +...+ +.+|.
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g----------~~vi~~~~~~-~~~~~----~~~g~ 222 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAKRRG----------AIVIAVAGAA-KEEAV----RALGA 222 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHhcC----------CEEEEEeCch-hhHHH----HhcCC
Confidence 35678999988776 23333444444432 3577776554 54433 34665
No 484
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=20.56 E-value=2.2e+02 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=36.8
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++||+.|-=.++|- |--+.|-|.+. ..++|+|+|+++.++.+++ .+|...
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~a---------gA~~IiAvD~~~~Kl~~A~----~fGAT~ 233 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAA---------GAGRIIAVDINPEKLELAK----KFGATH 233 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHc---------CCceEEEEeCCHHHHHHHH----hcCCce
Confidence 45789999888776653 33344444432 3689999999999998764 577653
No 485
>PRK06128 oxidoreductase; Provisional
Probab=20.51 E-value=6.5e+02 Score=26.64 Aligned_cols=132 Identities=9% Similarity=-0.036 Sum_probs=62.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d--~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
+.+||=.+| .|+....++..|... ...|+....+ ..+...+...++..+. .+.+...|......+. .
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~-------G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~--~ 123 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFARE-------GADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCR--Q 123 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHc-------CCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHH--H
Confidence 567776664 566777888877642 2356655543 2334444444444443 3445555554321110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCC-CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG-dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
............|.|+..+--.. .+.+. -..+.|...-..+ ..-...+++.++..++.||+||+.
T Consensus 124 ---------~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N----~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 124 ---------LVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTN----VYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred ---------HHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHH----hHHHHHHHHHHHHhcCcCCEEEEE
Confidence 00000011246798887553111 11111 1122232211111 112345677777888888999885
No 486
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.44 E-value=4.2e+02 Score=28.20 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 88 APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
|.|.....+|..+... .-.|+..|.++.++..+...+.
T Consensus 8 G~G~mG~~iA~~la~~-------G~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 8 GAGVMGRGIAYVFAVS-------GFQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred CccHHHHHHHHHHHhC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 4466666677666542 2369999999999988876543
No 487
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.16 E-value=7.2e+02 Score=25.40 Aligned_cols=60 Identities=2% Similarity=-0.070 Sum_probs=34.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|.+||-.+ |.|+....+++.|... ...|++++.+. ...+...++..+. ++.+...|...
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~-------G~~vv~~~~~~--~~~~~~~~~~~~~-~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAIITG-CNTGLGQGMAIGLAKA-------GADIVGVGVAE--APETQAQVEALGR-KFHFITADLIQ 66 (251)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEecCch--HHHHHHHHHHcCC-eEEEEEeCCCC
Confidence 366777655 4567778888877652 34677776543 2233334444442 35555566554
Done!