Query 004787
Match_columns 730
No_of_seqs 397 out of 2529
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fzv_A Putative methyltransfer 100.0 2.7E-52 9.3E-57 453.7 10.3 212 9-255 85-304 (359)
2 2frx_A Hypothetical protein YE 100.0 4.6E-48 1.6E-52 435.6 30.0 379 17-646 64-447 (479)
3 3m4x_A NOL1/NOP2/SUN family pr 100.0 7E-46 2.4E-50 414.9 26.3 371 18-646 62-432 (456)
4 2b9e_A NOL1/NOP2/SUN domain fa 100.0 7E-45 2.4E-49 388.5 20.4 181 56-263 80-262 (309)
5 1ixk_A Methyltransferase; open 100.0 3.9E-43 1.3E-47 375.1 19.7 246 17-381 70-315 (315)
6 3m6w_A RRNA methylase; rRNA me 100.0 4E-43 1.4E-47 393.3 19.4 204 17-264 54-257 (464)
7 2yxl_A PH0851 protein, 450AA l 100.0 2.6E-39 8.9E-44 361.4 19.8 204 17-262 212-415 (450)
8 3ajd_A Putative methyltransfer 100.0 5.5E-39 1.9E-43 335.7 19.1 179 56-264 61-239 (274)
9 1sqg_A SUN protein, FMU protei 100.0 1.8E-37 6.2E-42 344.3 18.8 200 17-260 199-398 (429)
10 4dmg_A Putative uncharacterize 99.7 5.7E-17 2E-21 178.4 11.7 182 17-263 173-356 (393)
11 3id6_C Fibrillarin-like rRNA/T 99.7 3.4E-16 1.2E-20 160.7 14.8 140 74-268 72-218 (232)
12 1wxx_A TT1595, hypothetical pr 99.6 5.2E-15 1.8E-19 161.5 12.8 164 55-263 190-355 (382)
13 3v97_A Ribosomal RNA large sub 99.5 1.7E-14 5.8E-19 169.5 12.9 181 16-262 498-680 (703)
14 3c0k_A UPF0064 protein YCCW; P 99.5 2.1E-14 7.1E-19 157.4 10.3 166 55-263 200-369 (396)
15 2as0_A Hypothetical protein PH 99.5 4E-14 1.4E-18 155.0 11.5 165 56-262 197-364 (396)
16 2igt_A SAM dependent methyltra 99.4 1.4E-13 4.9E-18 148.0 9.9 163 55-259 129-299 (332)
17 2b78_A Hypothetical protein SM 99.4 4.5E-13 1.5E-17 146.7 10.5 160 56-257 192-355 (385)
18 3lpm_A Putative methyltransfer 99.4 1.8E-12 6.3E-17 133.2 14.0 153 67-255 37-192 (259)
19 2dul_A N(2),N(2)-dimethylguano 99.4 1.6E-13 5.3E-18 150.3 4.0 122 78-255 47-183 (378)
20 3e05_A Precorrin-6Y C5,15-meth 99.4 5.3E-12 1.8E-16 124.4 14.7 135 71-263 33-167 (204)
21 2frn_A Hypothetical protein PH 99.4 3.2E-12 1.1E-16 133.6 13.5 129 76-262 123-255 (278)
22 3k6r_A Putative transferase PH 99.3 4.9E-12 1.7E-16 133.1 13.7 130 76-263 123-256 (278)
23 3njr_A Precorrin-6Y methylase; 99.3 5.1E-12 1.7E-16 125.9 12.9 131 71-263 48-179 (204)
24 3tma_A Methyltransferase; thum 99.3 2.9E-12 1E-16 138.0 11.1 133 71-252 196-328 (354)
25 1i1n_A Protein-L-isoaspartate 99.3 3.4E-12 1.2E-16 127.6 10.7 114 75-245 74-192 (226)
26 3evz_A Methyltransferase; NYSG 99.3 1.8E-11 6E-16 122.5 15.8 152 75-262 52-204 (230)
27 2b3t_A Protein methyltransfera 99.3 9.9E-12 3.4E-16 128.9 14.2 143 77-255 108-254 (276)
28 3axs_A Probable N(2),N(2)-dime 99.3 8.1E-13 2.8E-17 145.3 6.0 125 77-255 51-177 (392)
29 1yb2_A Hypothetical protein TA 99.3 8.9E-12 3E-16 129.4 11.9 144 59-264 91-235 (275)
30 3mti_A RRNA methylase; SAM-dep 99.3 2.5E-11 8.6E-16 117.3 13.8 135 75-254 19-156 (185)
31 3eey_A Putative rRNA methylase 99.3 3.3E-11 1.1E-15 117.6 13.5 137 74-253 18-159 (197)
32 4df3_A Fibrillarin-like rRNA/T 99.3 1.5E-11 5.2E-16 126.2 11.2 110 74-235 73-182 (233)
33 3hm2_A Precorrin-6Y C5,15-meth 99.3 9.9E-12 3.4E-16 118.6 9.2 132 73-264 20-153 (178)
34 2qm3_A Predicted methyltransfe 99.2 6.7E-11 2.3E-15 128.6 14.9 143 58-255 151-300 (373)
35 2gpy_A O-methyltransferase; st 99.2 1.4E-11 4.9E-16 123.9 8.8 142 42-238 21-163 (233)
36 3dou_A Ribosomal RNA large sub 99.2 1E-11 3.5E-16 122.9 6.5 130 76-254 23-155 (191)
37 3u81_A Catechol O-methyltransf 99.2 3.5E-11 1.2E-15 120.4 9.9 152 61-263 41-194 (221)
38 2f8l_A Hypothetical protein LM 99.2 6.7E-11 2.3E-15 127.0 12.5 167 57-254 105-276 (344)
39 1nt2_A Fibrillarin-like PRE-rR 99.2 9.6E-11 3.3E-15 117.5 12.2 135 74-265 53-194 (210)
40 3mb5_A SAM-dependent methyltra 99.2 7.7E-11 2.6E-15 119.9 11.5 126 70-255 85-211 (255)
41 2pwy_A TRNA (adenine-N(1)-)-me 99.2 3.7E-10 1.3E-14 114.4 16.1 112 71-238 89-201 (258)
42 3tfw_A Putative O-methyltransf 99.2 5.5E-11 1.9E-15 121.8 10.1 125 63-239 48-174 (248)
43 1o54_A SAM-dependent O-methylt 99.2 1.8E-10 6.1E-15 119.4 13.6 132 71-264 105-237 (277)
44 4dzr_A Protein-(glutamine-N5) 99.2 3.1E-11 1.1E-15 118.1 7.1 146 77-252 29-178 (215)
45 3a27_A TYW2, uncharacterized p 99.2 8.5E-11 2.9E-15 122.5 10.5 108 74-239 115-222 (272)
46 1nv8_A HEMK protein; class I a 99.1 1.1E-10 3.6E-15 122.7 11.0 136 77-252 122-262 (284)
47 3duw_A OMT, O-methyltransferas 99.1 1.1E-10 3.8E-15 116.3 10.2 129 62-239 42-171 (223)
48 3p9n_A Possible methyltransfer 99.1 2.7E-10 9.3E-15 110.9 12.6 112 77-238 43-156 (189)
49 2yx1_A Hypothetical protein MJ 99.1 1.8E-10 6.3E-15 123.6 11.8 112 77-254 194-306 (336)
50 3gdh_A Trimethylguanosine synt 99.1 9.6E-11 3.3E-15 118.2 8.9 94 66-192 66-160 (241)
51 1wy7_A Hypothetical protein PH 99.1 3.9E-10 1.3E-14 110.9 12.3 127 75-261 46-172 (207)
52 2ift_A Putative methylase HI07 99.1 1.9E-10 6.5E-15 114.0 9.6 110 78-239 53-167 (201)
53 2ozv_A Hypothetical protein AT 99.1 2.9E-10 1E-14 117.4 11.3 142 67-235 25-170 (260)
54 3bt7_A TRNA (uracil-5-)-methyl 99.1 1.1E-10 3.7E-15 126.9 8.3 115 79-238 214-329 (369)
55 3grz_A L11 mtase, ribosomal pr 99.1 6.5E-10 2.2E-14 109.3 12.9 125 76-263 58-182 (205)
56 3g89_A Ribosomal RNA small sub 99.1 3.2E-10 1.1E-14 116.8 10.4 128 75-256 77-204 (249)
57 3dh0_A SAM dependent methyltra 99.1 1.3E-09 4.3E-14 107.8 14.4 138 73-263 32-178 (219)
58 3dr5_A Putative O-methyltransf 99.1 1.9E-10 6.5E-15 116.4 8.5 112 75-238 53-166 (221)
59 1xxl_A YCGJ protein; structura 99.1 7.9E-10 2.7E-14 111.8 12.8 123 62-238 5-127 (239)
60 3fpf_A Mtnas, putative unchara 99.1 5.9E-10 2E-14 118.3 12.1 105 73-234 117-221 (298)
61 1l3i_A Precorrin-6Y methyltran 99.1 4.5E-10 1.5E-14 107.6 10.2 130 73-263 28-159 (192)
62 3c3y_A Pfomt, O-methyltransfer 99.1 4.1E-10 1.4E-14 114.7 10.4 150 41-239 34-185 (237)
63 1dus_A MJ0882; hypothetical pr 99.1 1.2E-09 4.1E-14 104.8 13.0 133 73-262 47-181 (194)
64 1yzh_A TRNA (guanine-N(7)-)-me 99.1 1.3E-09 4.5E-14 108.3 13.7 140 77-263 40-179 (214)
65 3vc1_A Geranyl diphosphate 2-C 99.0 1.7E-09 5.7E-14 114.0 15.0 114 73-240 111-226 (312)
66 3lbf_A Protein-L-isoaspartate 99.0 1E-09 3.5E-14 108.1 12.3 107 71-237 70-176 (210)
67 1inl_A Spermidine synthase; be 99.0 2E-10 6.9E-15 121.3 7.4 137 78-261 90-232 (296)
68 2fca_A TRNA (guanine-N(7)-)-me 99.0 9.8E-10 3.4E-14 109.9 11.7 118 77-236 37-154 (213)
69 3ntv_A MW1564 protein; rossman 99.0 3.7E-10 1.3E-14 114.2 8.7 122 62-236 55-177 (232)
70 1xdz_A Methyltransferase GIDB; 99.0 7E-10 2.4E-14 112.5 10.8 127 75-255 67-193 (240)
71 3tr6_A O-methyltransferase; ce 99.0 1.9E-10 6.6E-15 114.6 6.2 131 60-238 46-177 (225)
72 2fpo_A Methylase YHHF; structu 99.0 5.3E-10 1.8E-14 110.8 9.2 109 78-239 54-164 (202)
73 3kr9_A SAM-dependent methyltra 99.0 6E-09 2.1E-13 106.4 16.8 125 76-262 13-139 (225)
74 2plw_A Ribosomal RNA methyltra 99.0 1.1E-09 3.8E-14 106.9 10.9 146 76-253 20-169 (201)
75 1i9g_A Hypothetical protein RV 99.0 1.5E-09 5E-14 111.9 12.2 112 71-238 92-206 (280)
76 3c3p_A Methyltransferase; NP_9 99.0 3.3E-10 1.1E-14 112.1 6.9 121 63-238 41-163 (210)
77 3f4k_A Putative methyltransfer 99.0 3.8E-09 1.3E-13 106.9 14.2 113 74-240 42-155 (257)
78 2yxd_A Probable cobalt-precorr 99.0 2.5E-09 8.4E-14 101.8 11.8 127 73-263 30-156 (183)
79 2b25_A Hypothetical protein; s 99.0 2.9E-09 9.9E-14 113.5 13.6 110 72-235 99-219 (336)
80 3r3h_A O-methyltransferase, SA 99.0 1.2E-10 4.1E-15 119.3 2.5 149 41-238 24-173 (242)
81 1g8a_A Fibrillarin-like PRE-rR 99.0 2.8E-09 9.5E-14 106.6 12.3 110 74-235 69-178 (227)
82 3dxy_A TRNA (guanine-N(7)-)-me 99.0 1.7E-09 5.8E-14 109.1 10.6 120 77-237 33-152 (218)
83 1dl5_A Protein-L-isoaspartate 99.0 2.4E-09 8.3E-14 113.5 12.1 108 71-235 68-175 (317)
84 2vdv_E TRNA (guanine-N(7)-)-me 99.0 2.9E-09 1E-13 108.4 12.1 140 76-261 47-195 (246)
85 4gek_A TRNA (CMO5U34)-methyltr 99.0 3.1E-09 1.1E-13 110.3 12.4 112 76-237 68-180 (261)
86 3lec_A NADB-rossmann superfami 98.9 1.5E-08 5.2E-13 103.8 16.9 126 76-262 19-145 (230)
87 1nkv_A Hypothetical protein YJ 98.9 5.5E-09 1.9E-13 105.7 13.5 112 73-238 31-143 (256)
88 2ipx_A RRNA 2'-O-methyltransfe 98.9 4.2E-09 1.4E-13 106.0 12.4 110 73-234 72-181 (233)
89 3kkz_A Uncharacterized protein 98.9 3.6E-09 1.2E-13 108.4 12.1 114 75-242 43-157 (267)
90 2okc_A Type I restriction enzy 98.9 1.9E-09 6.4E-14 120.0 10.6 168 56-253 149-328 (445)
91 2h1r_A Dimethyladenosine trans 98.9 6.6E-10 2.2E-14 117.5 6.4 137 60-238 24-162 (299)
92 1o9g_A RRNA methyltransferase; 98.9 2.8E-09 9.6E-14 108.6 10.8 126 77-238 50-217 (250)
93 1sui_A Caffeoyl-COA O-methyltr 98.9 1.7E-09 5.8E-14 111.1 9.2 147 41-236 43-191 (247)
94 3tm4_A TRNA (guanine N2-)-meth 98.9 3.8E-09 1.3E-13 114.9 12.3 128 76-255 215-343 (373)
95 2nyu_A Putative ribosomal RNA 98.9 2.9E-09 9.9E-14 103.4 10.1 140 76-253 20-160 (196)
96 2esr_A Methyltransferase; stru 98.9 2.2E-09 7.4E-14 102.9 9.0 111 76-239 29-142 (177)
97 2bm8_A Cephalosporin hydroxyla 98.9 7.1E-10 2.4E-14 113.1 5.7 137 74-262 77-215 (236)
98 2pbf_A Protein-L-isoaspartate 98.9 3.1E-09 1.1E-13 106.0 10.2 112 75-235 77-193 (227)
99 3jwh_A HEN1; methyltransferase 98.9 6.2E-09 2.1E-13 103.1 12.1 144 75-268 26-196 (217)
100 4dcm_A Ribosomal RNA large sub 98.9 7.4E-09 2.5E-13 113.1 13.3 125 69-241 213-340 (375)
101 1uwv_A 23S rRNA (uracil-5-)-me 98.9 9.6E-09 3.3E-13 114.0 14.4 88 74-189 282-369 (433)
102 1ej0_A FTSJ; methyltransferase 98.9 3.1E-09 1.1E-13 99.7 8.9 132 76-253 20-151 (180)
103 2fhp_A Methylase, putative; al 98.9 3.7E-09 1.3E-13 101.5 9.5 116 77-240 43-159 (187)
104 2ih2_A Modification methylase 98.9 1.8E-09 6E-14 117.9 8.1 165 58-263 19-192 (421)
105 3ujc_A Phosphoethanolamine N-m 98.9 1E-08 3.4E-13 103.8 13.0 113 73-238 50-162 (266)
106 3gnl_A Uncharacterized protein 98.9 2.7E-08 9.3E-13 102.7 16.1 126 76-262 19-145 (244)
107 3hem_A Cyclopropane-fatty-acyl 98.9 1.7E-08 6E-13 105.4 14.3 121 72-239 66-187 (302)
108 1vl5_A Unknown conserved prote 98.9 6.3E-09 2.1E-13 106.0 10.4 111 72-236 31-141 (260)
109 1ws6_A Methyltransferase; stru 98.9 4.8E-09 1.7E-13 99.0 8.7 115 77-242 40-154 (171)
110 3dtn_A Putative methyltransfer 98.9 2.1E-08 7.2E-13 100.2 13.8 111 76-239 42-152 (234)
111 2yvl_A TRMI protein, hypotheti 98.9 2.5E-08 8.6E-13 100.3 14.4 109 71-238 84-193 (248)
112 2yxe_A Protein-L-isoaspartate 98.9 1.3E-08 4.4E-13 100.6 12.0 109 72-237 71-179 (215)
113 2p41_A Type II methyltransfera 98.8 1.4E-09 4.8E-14 115.6 5.1 112 76-242 80-196 (305)
114 2nxc_A L11 mtase, ribosomal pr 98.8 1.3E-08 4.5E-13 104.6 12.2 124 76-263 118-241 (254)
115 1fbn_A MJ fibrillarin homologu 98.8 2E-08 6.7E-13 101.1 13.2 108 74-234 70-177 (230)
116 3bus_A REBM, methyltransferase 98.8 3.7E-08 1.3E-12 100.7 15.5 113 73-238 56-169 (273)
117 3dmg_A Probable ribosomal RNA 98.8 1.3E-08 4.6E-13 111.3 12.8 114 77-240 232-345 (381)
118 1r18_A Protein-L-isoaspartate( 98.8 8.5E-09 2.9E-13 103.3 10.3 110 75-236 81-195 (227)
119 2h00_A Methyltransferase 10 do 98.8 5E-08 1.7E-12 99.2 16.0 157 78-262 65-237 (254)
120 1kpg_A CFA synthase;, cyclopro 98.8 2.6E-08 8.8E-13 102.9 14.0 112 73-238 59-171 (287)
121 3jwg_A HEN1, methyltransferase 98.8 1.9E-08 6.5E-13 99.6 12.5 144 75-268 26-196 (219)
122 2kw5_A SLR1183 protein; struct 98.8 4.7E-08 1.6E-12 95.4 15.1 107 76-238 28-134 (202)
123 3dlc_A Putative S-adenosyl-L-m 98.8 2.2E-08 7.6E-13 97.9 11.9 111 74-238 40-151 (219)
124 2o57_A Putative sarcosine dime 98.8 5.5E-08 1.9E-12 101.0 15.4 110 75-237 79-189 (297)
125 2hnk_A SAM-dependent O-methylt 98.8 6.2E-09 2.1E-13 105.3 8.0 130 69-238 51-184 (239)
126 3sm3_A SAM-dependent methyltra 98.8 4.4E-08 1.5E-12 97.1 13.9 113 76-239 28-145 (235)
127 3ofk_A Nodulation protein S; N 98.8 2.2E-08 7.5E-13 98.8 11.5 137 73-263 46-188 (216)
128 3orh_A Guanidinoacetate N-meth 98.8 6.4E-09 2.2E-13 105.8 7.9 113 76-235 58-170 (236)
129 3cbg_A O-methyltransferase; cy 98.8 6.5E-09 2.2E-13 105.2 7.8 117 72-239 66-186 (232)
130 2jjq_A Uncharacterized RNA met 98.8 7.9E-08 2.7E-12 106.7 17.1 79 76-189 288-366 (425)
131 2ar0_A M.ecoki, type I restric 98.8 4.6E-09 1.6E-13 120.0 7.3 170 56-253 147-332 (541)
132 2avd_A Catechol-O-methyltransf 98.8 4.6E-09 1.6E-13 104.8 6.5 119 71-238 62-182 (229)
133 3g5l_A Putative S-adenosylmeth 98.8 5.2E-08 1.8E-12 98.6 14.4 108 74-237 40-147 (253)
134 1vbf_A 231AA long hypothetical 98.8 1.8E-08 6.2E-13 100.6 10.7 105 72-238 64-168 (231)
135 2xvm_A Tellurite resistance pr 98.8 2.7E-08 9.2E-13 96.2 11.6 109 73-234 27-135 (199)
136 3lcc_A Putative methyl chlorid 98.8 2.5E-08 8.7E-13 99.9 11.7 130 79-263 67-204 (235)
137 1jg1_A PIMT;, protein-L-isoasp 98.8 1.4E-08 4.9E-13 102.3 9.7 108 71-237 84-191 (235)
138 1zq9_A Probable dimethyladenos 98.8 1.6E-09 5.3E-14 113.8 2.7 126 71-238 21-149 (285)
139 1zx0_A Guanidinoacetate N-meth 98.8 6.6E-09 2.3E-13 104.8 7.1 115 76-237 58-172 (236)
140 1jsx_A Glucose-inhibited divis 98.8 3.2E-08 1.1E-12 96.9 11.5 103 78-237 65-167 (207)
141 3ckk_A TRNA (guanine-N(7)-)-me 98.8 1.6E-08 5.6E-13 103.1 9.6 119 77-237 45-170 (235)
142 3mgg_A Methyltransferase; NYSG 98.8 3.3E-08 1.1E-12 101.3 11.9 110 74-235 33-142 (276)
143 3ou2_A SAM-dependent methyltra 98.8 1.1E-07 3.8E-12 93.2 15.0 109 73-238 41-149 (218)
144 3lkd_A Type I restriction-modi 98.8 2.9E-08 9.9E-13 113.4 12.4 193 43-263 176-388 (542)
145 1pjz_A Thiopurine S-methyltran 98.8 2.4E-08 8.2E-13 99.0 10.2 115 74-239 18-144 (203)
146 2fk8_A Methoxy mycolic acid sy 98.7 6.1E-08 2.1E-12 101.9 13.6 114 73-240 85-199 (318)
147 1xtp_A LMAJ004091AAA; SGPP, st 98.7 9.7E-08 3.3E-12 96.2 14.4 129 74-255 89-229 (254)
148 3ocj_A Putative exported prote 98.7 4.3E-08 1.5E-12 102.8 12.1 115 74-237 114-229 (305)
149 2xyq_A Putative 2'-O-methyl tr 98.7 1.5E-08 5E-13 107.2 8.0 123 73-254 58-187 (290)
150 2pjd_A Ribosomal RNA small sub 98.7 2.6E-08 9E-13 106.8 10.1 119 72-240 190-308 (343)
151 3mq2_A 16S rRNA methyltransfer 98.7 6.5E-08 2.2E-12 95.9 12.2 115 73-235 22-140 (218)
152 3e23_A Uncharacterized protein 98.7 7.5E-08 2.6E-12 94.8 12.5 123 74-255 39-172 (211)
153 2ex4_A Adrenal gland protein A 98.7 6.7E-08 2.3E-12 97.4 12.3 130 76-256 77-217 (241)
154 1ri5_A MRNA capping enzyme; me 98.7 7.4E-08 2.5E-12 99.2 12.6 115 76-238 62-177 (298)
155 3gu3_A Methyltransferase; alph 98.7 1.6E-08 5.4E-13 105.0 7.5 112 73-237 17-128 (284)
156 1ve3_A Hypothetical protein PH 98.7 9.8E-08 3.3E-12 94.4 12.5 109 77-238 37-145 (227)
157 1ne2_A Hypothetical protein TA 98.7 5.3E-08 1.8E-12 95.3 10.4 121 75-262 48-168 (200)
158 3l8d_A Methyltransferase; stru 98.7 1.4E-07 4.7E-12 94.4 13.2 106 76-238 51-156 (242)
159 3q87_B N6 adenine specific DNA 98.7 2.6E-08 9E-13 95.9 7.6 120 77-256 22-141 (170)
160 3hnr_A Probable methyltransfer 98.7 6.4E-08 2.2E-12 95.6 10.5 108 75-239 42-149 (220)
161 3h2b_A SAM-dependent methyltra 98.7 1.4E-07 4.6E-12 92.2 12.7 126 79-263 42-179 (203)
162 2p35_A Trans-aconitate 2-methy 98.7 6.6E-08 2.2E-12 97.7 10.7 106 74-237 29-134 (259)
163 3g5t_A Trans-aconitate 3-methy 98.7 7.5E-08 2.6E-12 100.4 11.4 115 77-237 35-151 (299)
164 3m70_A Tellurite resistance pr 98.7 7.2E-08 2.5E-12 99.6 11.1 107 74-234 116-222 (286)
165 2pxx_A Uncharacterized protein 98.7 4.2E-08 1.5E-12 95.8 8.8 122 77-238 41-162 (215)
166 3cgg_A SAM-dependent methyltra 98.7 2.8E-07 9.5E-12 88.2 14.3 128 76-262 44-171 (195)
167 2p8j_A S-adenosylmethionine-de 98.7 4.7E-08 1.6E-12 95.6 9.0 111 76-238 21-131 (209)
168 3khk_A Type I restriction-modi 98.7 7.5E-08 2.6E-12 110.1 11.8 191 44-255 205-418 (544)
169 4fsd_A Arsenic methyltransfera 98.6 7.5E-08 2.6E-12 104.8 11.1 120 74-238 79-206 (383)
170 4htf_A S-adenosylmethionine-de 98.6 8.6E-08 3E-12 99.0 10.8 107 78-237 68-175 (285)
171 2yqz_A Hypothetical protein TT 98.6 6.7E-08 2.3E-12 97.7 9.7 106 74-234 35-140 (263)
172 1wzn_A SAM-dependent methyltra 98.6 2E-07 6.7E-12 94.1 13.0 107 76-235 39-145 (252)
173 3g07_A 7SK snRNA methylphospha 98.6 9.8E-08 3.3E-12 99.9 11.0 50 77-135 45-94 (292)
174 3p2e_A 16S rRNA methylase; met 98.6 2.4E-08 8.1E-13 101.2 5.7 114 76-235 22-139 (225)
175 3i9f_A Putative type 11 methyl 98.6 1.1E-07 3.9E-12 90.1 9.6 124 74-263 13-145 (170)
176 1m6y_A S-adenosyl-methyltransf 98.6 3.7E-08 1.3E-12 104.7 6.8 90 73-188 21-110 (301)
177 3adn_A Spermidine synthase; am 98.6 7.1E-08 2.4E-12 102.0 8.6 113 78-237 83-200 (294)
178 3uwp_A Histone-lysine N-methyl 98.6 1.1E-07 3.7E-12 105.0 10.2 111 73-234 168-287 (438)
179 1mjf_A Spermidine synthase; sp 98.6 6.7E-08 2.3E-12 101.1 7.9 112 77-238 74-196 (281)
180 2y1w_A Histone-arginine methyl 98.6 1.6E-07 5.5E-12 101.1 10.2 125 74-251 46-173 (348)
181 3d2l_A SAM-dependent methyltra 98.6 2.6E-07 9E-12 92.2 11.1 109 76-237 31-139 (243)
182 2fyt_A Protein arginine N-meth 98.6 1.6E-07 5.4E-12 101.0 10.1 122 74-246 60-184 (340)
183 3ccf_A Cyclopropane-fatty-acyl 98.6 1.4E-07 4.8E-12 97.2 9.3 107 72-238 51-157 (279)
184 3g2m_A PCZA361.24; SAM-depende 98.5 1E-07 3.5E-12 99.4 8.2 108 79-238 83-193 (299)
185 2p7i_A Hypothetical protein; p 98.5 2.6E-07 9E-12 91.9 10.7 102 77-237 41-143 (250)
186 3thr_A Glycine N-methyltransfe 98.5 1.2E-07 4.1E-12 98.0 8.3 122 74-238 53-178 (293)
187 3q7e_A Protein arginine N-meth 98.5 1.3E-07 4.6E-12 101.8 9.0 112 76-238 64-176 (349)
188 1u2z_A Histone-lysine N-methyl 98.5 3.3E-07 1.1E-11 102.0 12.3 113 73-234 237-358 (433)
189 2vdw_A Vaccinia virus capping 98.5 2.6E-07 8.9E-12 97.8 11.0 118 77-237 47-171 (302)
190 3m33_A Uncharacterized protein 98.5 1.3E-07 4.3E-12 94.8 8.1 111 76-255 46-158 (226)
191 3bkw_A MLL3908 protein, S-aden 98.5 1.5E-07 5.1E-12 94.0 8.5 108 73-236 38-145 (243)
192 2i7c_A Spermidine synthase; tr 98.5 1.6E-07 5.5E-12 98.3 8.9 115 77-238 77-195 (283)
193 2oxt_A Nucleoside-2'-O-methylt 98.5 6E-08 2.1E-12 101.1 5.6 106 76-237 72-187 (265)
194 3e8s_A Putative SAM dependent 98.5 2E-07 6.9E-12 91.6 9.0 106 75-237 49-154 (227)
195 3dli_A Methyltransferase; PSI- 98.5 8.3E-07 2.8E-11 89.3 13.7 129 75-263 38-181 (240)
196 1y8c_A S-adenosylmethionine-de 98.5 3.2E-07 1.1E-11 91.4 10.5 108 78-237 37-144 (246)
197 3iv6_A Putative Zn-dependent a 98.5 3.6E-07 1.2E-11 95.2 11.0 110 73-236 40-149 (261)
198 3bxo_A N,N-dimethyltransferase 98.5 4.9E-07 1.7E-11 90.0 11.3 106 77-238 39-144 (239)
199 2o07_A Spermidine synthase; st 98.5 2.3E-07 7.7E-12 98.5 9.2 114 77-237 94-211 (304)
200 2gb4_A Thiopurine S-methyltran 98.5 2.4E-07 8.2E-12 95.6 9.1 113 75-238 65-194 (252)
201 3r0q_C Probable protein argini 98.5 2E-07 6.9E-12 101.5 8.8 121 74-246 59-182 (376)
202 3bkx_A SAM-dependent methyltra 98.5 6.1E-07 2.1E-11 91.7 11.9 119 73-239 38-163 (275)
203 2wa2_A Non-structural protein 98.5 1E-07 3.4E-12 100.0 5.6 106 76-237 80-195 (276)
204 3ggd_A SAM-dependent methyltra 98.5 4.4E-07 1.5E-11 91.3 10.0 127 74-253 52-178 (245)
205 1g6q_1 HnRNP arginine N-methyl 98.5 3E-07 1E-11 98.2 9.1 127 76-253 36-165 (328)
206 1iy9_A Spermidine synthase; ro 98.5 6.4E-07 2.2E-11 93.5 11.4 113 78-237 75-191 (275)
207 2pt6_A Spermidine synthase; tr 98.5 1.8E-07 6.1E-12 100.0 7.3 114 77-237 115-232 (321)
208 1xj5_A Spermidine synthase 1; 98.5 2.4E-07 8.3E-12 99.7 8.2 117 76-238 118-238 (334)
209 2qfm_A Spermine synthase; sper 98.4 3.7E-07 1.3E-11 99.2 9.6 144 78-260 188-339 (364)
210 1qzz_A RDMB, aclacinomycin-10- 98.4 3.1E-06 1E-10 90.9 16.7 110 74-236 178-288 (374)
211 3fzg_A 16S rRNA methylase; met 98.4 2E-07 6.8E-12 93.1 6.7 107 77-238 48-156 (200)
212 2aot_A HMT, histamine N-methyl 98.4 4.3E-07 1.5E-11 94.6 9.5 120 76-237 50-174 (292)
213 3bzb_A Uncharacterized protein 98.4 1.7E-06 5.7E-11 90.2 13.8 116 76-239 77-209 (281)
214 3bwc_A Spermidine synthase; SA 98.4 3.1E-07 1.1E-11 97.2 8.2 133 77-255 94-231 (304)
215 3bgv_A MRNA CAP guanine-N7 met 98.4 1E-06 3.5E-11 92.6 11.9 119 77-238 33-158 (313)
216 2a14_A Indolethylamine N-methy 98.4 4.4E-07 1.5E-11 93.3 8.8 117 75-236 52-198 (263)
217 1uir_A Polyamine aminopropyltr 98.4 4.6E-07 1.6E-11 96.4 8.9 140 77-260 76-222 (314)
218 2r3s_A Uncharacterized protein 98.4 3.2E-06 1.1E-10 89.1 15.4 111 77-239 164-275 (335)
219 2i62_A Nicotinamide N-methyltr 98.4 5.9E-07 2E-11 90.8 9.2 135 76-255 54-230 (265)
220 3gjy_A Spermidine synthase; AP 98.4 4.4E-07 1.5E-11 97.1 8.5 137 80-262 91-227 (317)
221 4hg2_A Methyltransferase type 98.4 2.7E-07 9.1E-12 95.7 6.6 103 78-241 39-141 (257)
222 3ege_A Putative methyltransfer 98.4 2.7E-07 9.4E-12 94.4 6.6 103 74-237 30-132 (261)
223 3b3j_A Histone-arginine methyl 98.4 4.5E-07 1.6E-11 102.1 9.0 121 75-248 155-278 (480)
224 3pfg_A N-methyltransferase; N, 98.4 7.5E-07 2.6E-11 90.7 9.7 104 77-236 49-152 (263)
225 3ufb_A Type I restriction-modi 98.4 1.8E-06 6.1E-11 98.4 13.4 187 44-253 178-382 (530)
226 2b2c_A Spermidine synthase; be 98.4 5.2E-07 1.8E-11 96.2 7.8 115 77-238 107-225 (314)
227 3i53_A O-methyltransferase; CO 98.4 7.3E-06 2.5E-10 86.8 16.7 112 75-239 166-278 (332)
228 3ll7_A Putative methyltransfer 98.4 4.1E-07 1.4E-11 100.5 7.2 83 77-189 92-176 (410)
229 3s1s_A Restriction endonucleas 98.3 6.5E-07 2.2E-11 105.5 8.7 192 46-263 282-496 (878)
230 2gs9_A Hypothetical protein TT 98.3 1.2E-06 4.2E-11 85.9 9.4 100 78-238 36-135 (211)
231 3dp7_A SAM-dependent methyltra 98.3 6.4E-06 2.2E-10 88.8 15.4 114 77-240 178-292 (363)
232 1tw3_A COMT, carminomycin 4-O- 98.3 9.4E-06 3.2E-10 86.7 16.6 111 74-237 179-290 (360)
233 1x19_A CRTF-related protein; m 98.3 6.8E-06 2.3E-10 88.1 14.6 112 74-238 186-298 (359)
234 2avn_A Ubiquinone/menaquinone 98.3 2.3E-06 7.8E-11 87.3 9.9 102 78-238 54-155 (260)
235 1p91_A Ribosomal RNA large sub 98.2 1.1E-06 3.9E-11 89.7 7.2 98 77-238 84-181 (269)
236 3ldu_A Putative methylase; str 98.2 7.1E-06 2.4E-10 89.8 13.8 91 73-186 190-311 (385)
237 2g72_A Phenylethanolamine N-me 98.2 2.9E-06 9.8E-11 88.0 9.8 141 77-263 70-253 (289)
238 3ldg_A Putative uncharacterize 98.2 8.8E-06 3E-10 89.2 14.1 91 73-186 189-310 (384)
239 3k0b_A Predicted N6-adenine-sp 98.2 4.9E-06 1.7E-10 91.4 11.9 92 72-186 195-317 (393)
240 3gwz_A MMCR; methyltransferase 98.2 2.5E-05 8.7E-10 84.3 16.9 114 74-240 198-312 (369)
241 3htx_A HEN1; HEN1, small RNA m 98.2 4.6E-06 1.6E-10 98.6 11.8 114 75-238 718-837 (950)
242 4hc4_A Protein arginine N-meth 98.2 2.9E-06 1E-10 92.8 9.4 118 77-246 82-202 (376)
243 2cmg_A Spermidine synthase; tr 98.2 2.8E-06 9.5E-11 88.3 8.6 111 78-252 72-186 (262)
244 2ip2_A Probable phenazine-spec 98.2 1.2E-05 4.1E-10 85.0 13.7 111 75-239 165-276 (334)
245 2oyr_A UPF0341 protein YHIQ; a 98.2 2.8E-06 9.7E-11 88.3 8.1 125 72-258 80-215 (258)
246 2qy6_A UPF0209 protein YFCK; s 98.2 9.2E-06 3.1E-10 84.3 11.9 138 76-261 58-230 (257)
247 1yub_A Ermam, rRNA methyltrans 98.2 1.1E-07 3.7E-12 97.1 -2.9 88 69-190 20-107 (245)
248 3cc8_A Putative methyltransfer 98.1 4E-06 1.4E-10 82.4 8.3 102 77-237 31-132 (230)
249 3gru_A Dimethyladenosine trans 98.1 4.7E-06 1.6E-10 88.2 9.3 82 71-186 43-124 (295)
250 3mcz_A O-methyltransferase; ad 98.1 7.7E-06 2.6E-10 87.1 10.9 117 74-240 174-292 (352)
251 3hp7_A Hemolysin, putative; st 98.1 5.1E-06 1.7E-10 87.9 8.5 99 78-234 85-184 (291)
252 2zfu_A Nucleomethylin, cerebra 98.1 4.1E-06 1.4E-10 82.5 7.1 114 73-262 62-175 (215)
253 2r6z_A UPF0341 protein in RSP 98.1 1.2E-06 4.1E-11 90.9 2.8 84 73-186 78-171 (258)
254 3evf_A RNA-directed RNA polyme 98.1 2.6E-06 8.7E-11 89.1 5.1 112 76-235 72-184 (277)
255 1vlm_A SAM-dependent methyltra 98.0 9.9E-06 3.4E-10 80.3 9.0 96 78-238 47-142 (219)
256 3v97_A Ribosomal RNA large sub 98.0 2.7E-05 9.2E-10 91.6 14.1 128 73-235 185-347 (703)
257 2qe6_A Uncharacterized protein 98.0 5E-05 1.7E-09 79.0 14.5 120 78-238 77-199 (274)
258 2px2_A Genome polyprotein [con 98.0 1E-06 3.5E-11 91.2 1.6 38 76-118 71-108 (269)
259 3sso_A Methyltransferase; macr 98.0 6.1E-06 2.1E-10 90.9 7.6 104 78-236 216-325 (419)
260 3eld_A Methyltransferase; flav 98.0 3.4E-06 1.2E-10 88.9 4.5 110 77-234 80-190 (300)
261 4e2x_A TCAB9; kijanose, tetron 98.0 9.3E-06 3.2E-10 88.7 7.6 106 73-236 102-209 (416)
262 3opn_A Putative hemolysin; str 97.9 3.1E-06 1.1E-10 86.2 2.9 100 78-235 37-137 (232)
263 3gcz_A Polyprotein; flavivirus 97.9 3.6E-06 1.2E-10 88.2 3.3 111 76-234 88-200 (282)
264 4auk_A Ribosomal RNA large sub 97.9 1.4E-05 4.8E-10 87.0 7.9 76 76-190 209-284 (375)
265 3tqs_A Ribosomal RNA small sub 97.9 1.4E-05 4.7E-10 82.8 7.2 67 71-150 22-88 (255)
266 1af7_A Chemotaxis receptor met 97.9 3.6E-05 1.2E-09 80.6 10.4 112 78-234 105-251 (274)
267 3cvo_A Methyltransferase-like 97.9 8.8E-05 3E-09 74.5 11.9 131 77-252 29-169 (202)
268 3lst_A CALO1 methyltransferase 97.8 7.6E-05 2.6E-09 79.7 12.0 110 74-239 180-290 (348)
269 1qam_A ERMC' methyltransferase 97.8 3.1E-05 1.1E-09 79.1 7.9 66 72-150 24-89 (244)
270 3fut_A Dimethyladenosine trans 97.7 3.5E-05 1.2E-09 80.6 6.9 83 70-187 39-121 (271)
271 4a6d_A Hydroxyindole O-methylt 97.7 0.00014 5E-09 78.1 11.7 114 74-240 175-288 (353)
272 1wg8_A Predicted S-adenosylmet 97.7 2.6E-05 9E-10 81.9 5.4 85 73-188 17-101 (285)
273 3frh_A 16S rRNA methylase; met 97.7 0.00028 9.7E-09 72.8 12.5 106 77-238 104-210 (253)
274 3tka_A Ribosomal RNA small sub 97.6 4.9E-05 1.7E-09 81.7 5.2 89 73-188 52-140 (347)
275 3lcv_B Sisomicin-gentamicin re 97.5 0.00011 3.8E-09 76.6 7.2 109 77-238 131-240 (281)
276 3giw_A Protein of unknown func 97.5 0.00019 6.6E-09 75.3 8.4 118 79-238 79-203 (277)
277 3ftd_A Dimethyladenosine trans 97.5 0.00011 3.7E-09 75.7 6.4 65 72-150 25-89 (249)
278 3reo_A (ISO)eugenol O-methyltr 97.5 0.00027 9.3E-09 76.3 9.8 104 76-239 201-304 (368)
279 3uzu_A Ribosomal RNA small sub 97.4 0.0002 6.9E-09 75.1 7.9 69 71-150 35-103 (279)
280 3r24_A NSP16, 2'-O-methyl tran 97.4 0.00021 7E-09 75.3 7.5 104 75-234 106-216 (344)
281 1fp1_D Isoliquiritigenin 2'-O- 97.4 0.00025 8.4E-09 76.5 8.5 103 76-238 207-309 (372)
282 3p9c_A Caffeic acid O-methyltr 97.4 0.00035 1.2E-08 75.4 9.3 104 76-239 199-302 (364)
283 1fp2_A Isoflavone O-methyltran 97.3 0.00037 1.3E-08 74.5 8.6 105 75-239 185-292 (352)
284 3o4f_A Spermidine synthase; am 97.2 0.001 3.4E-08 70.4 9.5 117 70-234 76-197 (294)
285 2ld4_A Anamorsin; methyltransf 97.1 0.00025 8.6E-09 67.5 4.2 116 73-256 7-128 (176)
286 1qyr_A KSGA, high level kasuga 97.1 0.00016 5.6E-09 74.6 2.9 66 72-150 15-80 (252)
287 3p8z_A Mtase, non-structural p 97.0 0.0016 5.5E-08 66.7 9.1 37 75-120 75-111 (267)
288 1zg3_A Isoflavanone 4'-O-methy 97.0 0.0013 4.5E-08 70.3 8.9 103 76-238 191-296 (358)
289 4azs_A Methyltransferase WBDD; 97.0 0.00073 2.5E-08 77.3 7.3 75 78-182 66-140 (569)
290 3c6k_A Spermine synthase; sper 97.0 0.0014 4.9E-08 71.5 8.8 152 78-269 205-365 (381)
291 2wk1_A NOVP; transferase, O-me 96.9 0.0033 1.1E-07 66.1 10.1 136 79-263 107-271 (282)
292 3lkz_A Non-structural protein 96.7 0.0037 1.3E-07 65.9 9.1 37 76-121 92-128 (321)
293 4gqb_A Protein arginine N-meth 96.7 0.0033 1.1E-07 73.0 9.2 124 79-250 358-484 (637)
294 1g55_A DNA cytosine methyltran 96.6 0.0018 6.2E-08 69.6 5.9 83 80-193 3-85 (343)
295 3g7u_A Cytosine-specific methy 96.6 0.0054 1.9E-07 66.9 9.3 87 80-194 3-89 (376)
296 2c7p_A Modification methylase 96.6 0.0047 1.6E-07 66.1 8.6 79 79-194 11-89 (327)
297 2oo3_A Protein involved in cat 96.5 0.00051 1.8E-08 72.2 0.9 121 79-253 92-212 (283)
298 3ua3_A Protein arginine N-meth 96.5 0.0033 1.1E-07 73.5 7.3 136 79-251 410-552 (745)
299 3vyw_A MNMC2; tRNA wobble urid 96.4 0.015 5E-07 61.9 10.9 133 78-259 96-243 (308)
300 2zig_A TTHA0409, putative modi 95.5 0.023 8E-07 59.4 7.8 48 77-135 234-281 (297)
301 3two_A Mannitol dehydrogenase; 94.8 0.067 2.3E-06 56.7 8.9 91 75-234 173-264 (348)
302 4h0n_A DNMT2; SAH binding, tra 94.8 0.031 1E-06 59.9 6.0 82 80-192 4-85 (333)
303 2qrv_A DNA (cytosine-5)-methyl 94.7 0.039 1.3E-06 58.2 6.6 85 77-192 14-99 (295)
304 3s2e_A Zinc-containing alcohol 94.6 0.07 2.4E-06 56.3 8.4 100 74-234 162-262 (340)
305 1f8f_A Benzyl alcohol dehydrog 94.6 0.074 2.5E-06 56.9 8.6 51 74-137 186-237 (371)
306 4ej6_A Putative zinc-binding d 94.5 0.072 2.5E-06 57.2 8.2 105 74-234 178-283 (370)
307 2py6_A Methyltransferase FKBM; 94.5 0.089 3.1E-06 57.7 9.1 67 73-146 221-291 (409)
308 1pl8_A Human sorbitol dehydrog 94.4 0.089 3E-06 56.0 8.7 52 74-138 167-219 (356)
309 3ubt_Y Modification methylase 94.3 0.069 2.4E-06 56.1 7.4 77 80-192 1-77 (331)
310 3b5i_A S-adenosyl-L-methionine 94.3 0.15 5.1E-06 55.6 10.1 53 79-131 53-111 (374)
311 1g60_A Adenine-specific methyl 94.2 0.049 1.7E-06 55.8 5.9 49 76-135 210-258 (260)
312 2efj_A 3,7-dimethylxanthine me 94.2 0.31 1.1E-05 53.2 12.4 42 79-120 53-102 (384)
313 3jv7_A ADH-A; dehydrogenase, n 94.1 0.094 3.2E-06 55.4 7.9 101 75-234 168-269 (345)
314 3fpc_A NADP-dependent alcohol 94.1 0.063 2.1E-06 57.0 6.6 103 74-234 162-265 (352)
315 2dph_A Formaldehyde dismutase; 94.1 0.18 6.1E-06 54.5 10.2 50 74-136 181-231 (398)
316 3qv2_A 5-cytosine DNA methyltr 94.0 0.042 1.4E-06 58.8 5.0 79 79-189 10-89 (327)
317 3uko_A Alcohol dehydrogenase c 93.8 0.077 2.6E-06 57.0 6.6 52 74-138 189-241 (378)
318 1i4w_A Mitochondrial replicati 93.7 0.087 3E-06 57.0 6.9 60 78-149 58-117 (353)
319 4a2c_A Galactitol-1-phosphate 93.6 0.23 7.8E-06 52.3 9.9 52 74-138 156-208 (346)
320 1e3j_A NADP(H)-dependent ketos 93.5 0.19 6.3E-06 53.4 9.0 50 74-137 164-214 (352)
321 1kol_A Formaldehyde dehydrogen 93.4 0.092 3.1E-06 56.7 6.5 51 74-137 181-232 (398)
322 1p0f_A NADP-dependent alcohol 93.3 0.15 5.2E-06 54.5 8.0 52 74-138 187-239 (373)
323 3uog_A Alcohol dehydrogenase; 93.3 0.14 4.7E-06 54.7 7.6 51 74-138 185-236 (363)
324 2jhf_A Alcohol dehydrogenase E 93.2 0.15 5.2E-06 54.5 7.7 51 74-137 187-238 (374)
325 3pvc_A TRNA 5-methylaminomethy 93.2 0.23 7.9E-06 57.8 9.8 141 77-260 57-229 (689)
326 1cdo_A Alcohol dehydrogenase; 93.1 0.15 5.1E-06 54.6 7.5 51 74-137 188-239 (374)
327 1uuf_A YAHK, zinc-type alcohol 93.1 0.14 4.8E-06 55.0 7.2 49 75-137 191-240 (369)
328 2fzw_A Alcohol dehydrogenase c 93.1 0.17 5.8E-06 54.0 7.9 52 74-138 186-238 (373)
329 1e3i_A Alcohol dehydrogenase, 93.0 0.16 5.4E-06 54.4 7.5 51 74-137 191-242 (376)
330 4dvj_A Putative zinc-dependent 92.2 0.18 6.3E-06 53.9 6.7 97 78-234 171-269 (363)
331 3m6i_A L-arabinitol 4-dehydrog 92.2 0.14 4.7E-06 54.5 5.6 48 73-129 174-222 (363)
332 4eez_A Alcohol dehydrogenase 1 91.8 0.35 1.2E-05 50.9 8.1 52 74-138 159-211 (348)
333 2k4m_A TR8_protein, UPF0146 pr 91.5 0.15 5.2E-06 48.6 4.5 39 77-125 34-73 (153)
334 1vj0_A Alcohol dehydrogenase, 91.5 0.35 1.2E-05 52.0 7.8 52 74-138 190-243 (380)
335 1piw_A Hypothetical zinc-type 91.4 0.16 5.3E-06 54.2 5.0 51 74-138 175-226 (360)
336 2h6e_A ADH-4, D-arabinose 1-de 91.1 0.24 8.4E-06 52.3 6.0 51 75-138 168-219 (344)
337 3ip1_A Alcohol dehydrogenase, 90.9 0.67 2.3E-05 50.1 9.5 50 75-137 210-260 (404)
338 3goh_A Alcohol dehydrogenase, 90.9 0.23 7.8E-06 51.7 5.5 50 74-138 138-188 (315)
339 3me5_A Cytosine-specific methy 90.5 0.26 8.9E-06 55.4 5.8 99 78-192 87-185 (482)
340 3ps9_A TRNA 5-methylaminomethy 89.2 1.1 3.8E-05 51.8 10.0 140 77-259 65-236 (676)
341 3gms_A Putative NADPH:quinone 88.8 0.5 1.7E-05 49.8 6.2 50 74-137 140-191 (340)
342 3fbg_A Putative arginate lyase 87.9 0.42 1.4E-05 50.6 4.9 46 78-137 150-197 (346)
343 1rjw_A ADH-HT, alcohol dehydro 87.9 1.1 3.6E-05 47.3 8.0 49 75-137 161-210 (339)
344 2eih_A Alcohol dehydrogenase; 87.3 1 3.4E-05 47.5 7.4 50 74-137 162-213 (343)
345 2cf5_A Atccad5, CAD, cinnamyl 87.1 0.66 2.2E-05 49.3 5.8 51 75-138 176-228 (357)
346 1pqw_A Polyketide synthase; ro 87.0 1 3.5E-05 43.2 6.7 45 74-128 34-80 (198)
347 2d8a_A PH0655, probable L-thre 86.7 0.91 3.1E-05 47.9 6.6 50 74-137 164-214 (348)
348 4dup_A Quinone oxidoreductase; 86.6 1.6 5.6E-05 46.1 8.6 50 74-137 163-214 (353)
349 3qwb_A Probable quinone oxidor 86.5 1 3.4E-05 47.2 6.8 50 74-137 144-195 (334)
350 3jyn_A Quinone oxidoreductase; 86.3 1.1 3.9E-05 46.6 7.1 50 74-137 136-187 (325)
351 2b5w_A Glucose dehydrogenase; 86.0 0.68 2.3E-05 49.1 5.2 51 74-137 162-224 (357)
352 4eye_A Probable oxidoreductase 85.9 0.99 3.4E-05 47.6 6.4 50 74-137 155-206 (342)
353 3swr_A DNA (cytosine-5)-methyl 85.8 1.5 5.2E-05 53.4 8.7 96 79-193 540-635 (1002)
354 1eg2_A Modification methylase 85.5 0.85 2.9E-05 48.3 5.6 49 76-135 240-291 (319)
355 1m6e_X S-adenosyl-L-methionnin 85.2 0.72 2.5E-05 49.9 5.0 138 79-238 52-212 (359)
356 2zig_A TTHA0409, putative modi 84.8 0.43 1.5E-05 49.7 2.9 60 175-236 39-98 (297)
357 4ft4_B DNA (cytosine-5)-methyl 84.5 2 6.8E-05 50.7 8.7 49 78-130 211-259 (784)
358 4b7c_A Probable oxidoreductase 84.5 1.6 5.6E-05 45.5 7.3 51 74-137 145-197 (336)
359 2j3h_A NADP-dependent oxidored 84.2 1.4 4.9E-05 46.1 6.7 51 74-137 151-203 (345)
360 1v3u_A Leukotriene B4 12- hydr 84.1 2.2 7.5E-05 44.5 8.0 50 74-137 141-192 (333)
361 1jvb_A NAD(H)-dependent alcoho 84.0 1.5 5E-05 46.3 6.6 51 74-137 166-218 (347)
362 2c0c_A Zinc binding alcohol de 83.8 2.1 7.3E-05 45.4 7.9 50 74-137 159-210 (362)
363 1xa0_A Putative NADPH dependen 83.8 1.3 4.5E-05 46.1 6.1 51 74-138 144-197 (328)
364 1boo_A Protein (N-4 cytosine-s 83.3 0.77 2.6E-05 48.5 4.1 50 76-136 250-299 (323)
365 2dq4_A L-threonine 3-dehydroge 82.3 1 3.4E-05 47.5 4.5 46 73-128 160-206 (343)
366 4fs3_A Enoyl-[acyl-carrier-pro 82.2 4 0.00014 41.1 8.8 138 78-234 5-145 (256)
367 1yqd_A Sinapyl alcohol dehydro 82.1 1.6 5.6E-05 46.4 6.2 50 75-137 183-234 (366)
368 2cdc_A Glucose dehydrogenase g 81.9 2.4 8.2E-05 45.0 7.3 51 73-137 166-229 (366)
369 3krt_A Crotonyl COA reductase; 81.7 2.1 7.1E-05 47.1 6.9 51 74-138 224-276 (456)
370 3k31_A Enoyl-(acyl-carrier-pro 81.5 5.1 0.00017 41.2 9.5 147 62-235 16-168 (296)
371 1qor_A Quinone oxidoreductase; 81.4 2.4 8.3E-05 44.0 7.0 47 73-129 135-183 (327)
372 3nx4_A Putative oxidoreductase 81.4 1.6 5.6E-05 45.2 5.7 50 75-138 142-194 (324)
373 3oig_A Enoyl-[acyl-carrier-pro 81.4 5.8 0.0002 39.6 9.7 135 79-235 7-147 (266)
374 2j8z_A Quinone oxidoreductase; 81.0 2.5 8.5E-05 44.7 7.1 50 74-137 158-209 (354)
375 2hcy_A Alcohol dehydrogenase 1 80.9 1.4 4.8E-05 46.4 5.0 49 75-137 166-216 (347)
376 1boo_A Protein (N-4 cytosine-s 80.8 1.4 4.7E-05 46.6 4.9 55 175-237 32-86 (323)
377 1wly_A CAAR, 2-haloacrylate re 80.0 3.8 0.00013 42.7 8.0 46 74-129 141-188 (333)
378 3av4_A DNA (cytosine-5)-methyl 79.8 3 0.0001 52.3 8.1 96 78-192 850-945 (1330)
379 1tt7_A YHFP; alcohol dehydroge 78.5 2.1 7.3E-05 44.5 5.4 50 75-138 146-198 (330)
380 1iz0_A Quinone oxidoreductase; 78.3 1.3 4.6E-05 45.5 3.8 48 76-137 123-172 (302)
381 2p38_A Protein involved in rib 78.0 7.1 0.00024 37.6 8.5 135 503-673 17-157 (166)
382 4dkj_A Cytosine-specific methy 77.9 2.1 7.3E-05 46.9 5.4 45 80-132 11-59 (403)
383 4a0s_A Octenoyl-COA reductase/ 77.9 7.5 0.00026 42.3 9.8 51 74-138 216-268 (447)
384 1wma_A Carbonyl reductase [NAD 76.0 10 0.00034 37.4 9.4 134 79-236 4-139 (276)
385 1yb5_A Quinone oxidoreductase; 75.7 4.4 0.00015 42.9 7.0 50 74-137 166-217 (351)
386 1g60_A Adenine-specific methyl 74.5 2.2 7.4E-05 43.4 4.1 56 175-238 22-77 (260)
387 3gaz_A Alcohol dehydrogenase s 74.4 3.4 0.00012 43.5 5.7 49 74-137 146-196 (343)
388 1xu9_A Corticosteroid 11-beta- 73.5 20 0.00068 36.2 11.1 62 79-148 28-89 (286)
389 3tqh_A Quinone oxidoreductase; 72.9 6.9 0.00024 40.6 7.5 50 74-138 148-199 (321)
390 3o26_A Salutaridine reductase; 72.7 46 0.0016 33.3 13.6 62 79-148 12-73 (311)
391 3gqv_A Enoyl reductase; medium 72.7 7.8 0.00027 41.2 8.1 47 77-138 163-211 (371)
392 3tos_A CALS11; methyltransfera 72.4 5.6 0.00019 41.0 6.5 141 78-262 70-245 (257)
393 1zsy_A Mitochondrial 2-enoyl t 70.9 11 0.00036 39.8 8.5 55 74-138 163-219 (357)
394 1gu7_A Enoyl-[acyl-carrier-pro 70.5 9 0.00031 40.3 7.9 55 74-138 162-219 (364)
395 2vn8_A Reticulon-4-interacting 70.0 8.8 0.0003 40.7 7.7 47 76-137 181-229 (375)
396 1ja9_A 4HNR, 1,3,6,8-tetrahydr 69.4 16 0.00053 36.3 9.0 133 79-235 21-155 (274)
397 3grk_A Enoyl-(acyl-carrier-pro 69.1 23 0.00078 36.2 10.4 149 61-235 15-169 (293)
398 2zb4_A Prostaglandin reductase 68.7 7.1 0.00024 41.0 6.6 54 74-137 154-209 (357)
399 4a27_A Synaptic vesicle membra 68.3 2.5 8.4E-05 44.6 2.9 44 74-127 138-183 (349)
400 1eg2_A Modification methylase 67.7 5.2 0.00018 42.3 5.2 53 175-239 57-109 (319)
401 3pxx_A Carveol dehydrogenase; 67.4 26 0.00088 35.1 10.3 132 79-235 10-153 (287)
402 3o38_A Short chain dehydrogena 66.7 20 0.00069 35.6 9.2 135 78-235 21-160 (266)
403 3pi7_A NADH oxidoreductase; gr 65.6 6.5 0.00022 41.2 5.5 46 77-137 162-211 (349)
404 1sqw_A Saccharomyces cerevisia 65.5 2.5 8.4E-05 41.8 2.0 121 503-646 11-136 (188)
405 3tjr_A Short chain dehydrogena 64.8 25 0.00087 35.9 9.8 62 78-148 30-91 (301)
406 3nyw_A Putative oxidoreductase 61.8 21 0.00071 35.5 8.2 134 79-235 7-144 (250)
407 3ek2_A Enoyl-(acyl-carrier-pro 61.0 19 0.00065 35.6 7.7 135 77-235 12-153 (271)
408 1mxh_A Pteridine reductase 2; 59.6 1.2E+02 0.0043 29.8 13.6 61 79-148 11-73 (276)
409 3pk0_A Short-chain dehydrogena 59.3 35 0.0012 34.0 9.4 62 79-148 10-71 (262)
410 3nzo_A UDP-N-acetylglucosamine 58.9 49 0.0017 35.3 11.1 63 79-148 35-100 (399)
411 4eso_A Putative oxidoreductase 58.3 22 0.00077 35.3 7.7 131 78-235 7-138 (255)
412 2hwk_A Helicase NSP2; rossman 57.5 5.5 0.00019 41.9 3.0 67 175-252 205-271 (320)
413 4dry_A 3-oxoacyl-[acyl-carrier 56.6 47 0.0016 33.6 10.0 62 79-148 33-94 (281)
414 4da9_A Short-chain dehydrogena 56.5 64 0.0022 32.5 10.9 62 78-148 28-90 (280)
415 3rih_A Short chain dehydrogena 56.4 17 0.00058 37.3 6.6 62 79-148 41-102 (293)
416 3f1l_A Uncharacterized oxidore 55.9 44 0.0015 32.9 9.5 60 79-146 12-71 (252)
417 3gaf_A 7-alpha-hydroxysteroid 55.7 55 0.0019 32.4 10.1 133 79-235 12-146 (256)
418 1fmc_A 7 alpha-hydroxysteroid 55.5 53 0.0018 31.9 9.8 61 79-148 11-71 (255)
419 3trk_A Nonstructural polyprote 54.7 7.6 0.00026 40.4 3.4 38 216-253 240-277 (324)
420 3lf2_A Short chain oxidoreduct 54.4 51 0.0017 32.8 9.6 133 79-234 8-144 (265)
421 3ojo_A CAP5O; rossmann fold, c 53.5 1.2E+02 0.0041 33.2 13.1 45 218-263 112-160 (431)
422 3is3_A 17BETA-hydroxysteroid d 53.1 71 0.0024 31.8 10.5 134 79-236 18-153 (270)
423 3ioy_A Short-chain dehydrogena 51.8 91 0.0031 32.1 11.4 62 79-148 8-70 (319)
424 3i1j_A Oxidoreductase, short c 51.4 65 0.0022 31.3 9.7 61 78-146 13-73 (247)
425 1xhl_A Short-chain dehydrogena 51.2 63 0.0021 32.9 9.9 62 79-148 26-89 (297)
426 4egf_A L-xylulose reductase; s 50.9 90 0.0031 31.0 10.8 61 79-148 20-81 (266)
427 1xg5_A ARPG836; short chain de 50.3 97 0.0033 30.8 11.0 62 79-148 32-94 (279)
428 2p91_A Enoyl-[acyl-carrier-pro 50.0 54 0.0019 32.9 9.1 38 78-122 20-58 (285)
429 3ijr_A Oxidoreductase, short c 49.9 64 0.0022 32.7 9.7 134 78-235 46-182 (291)
430 3rkr_A Short chain oxidoreduct 49.3 86 0.0029 31.0 10.4 62 78-148 28-89 (262)
431 3sx2_A Putative 3-ketoacyl-(ac 47.5 53 0.0018 32.8 8.5 62 78-148 12-85 (278)
432 3r1i_A Short-chain type dehydr 47.2 52 0.0018 33.2 8.4 76 63-148 17-92 (276)
433 3lyl_A 3-oxoacyl-(acyl-carrier 46.9 1.3E+02 0.0045 29.1 11.1 61 79-148 5-65 (247)
434 3t4x_A Oxidoreductase, short c 46.2 1.2E+02 0.0042 30.0 11.0 62 79-148 10-72 (267)
435 1h2b_A Alcohol dehydrogenase; 45.9 28 0.00096 36.6 6.4 52 74-138 182-234 (359)
436 1xkq_A Short-chain reductase f 45.1 66 0.0023 32.2 8.8 62 79-148 6-69 (280)
437 2pd4_A Enoyl-[acyl-carrier-pro 44.8 43 0.0015 33.4 7.4 133 79-235 6-144 (275)
438 3ppi_A 3-hydroxyacyl-COA dehyd 44.7 1.5E+02 0.0052 29.3 11.5 76 58-148 10-87 (281)
439 3g79_A NDP-N-acetyl-D-galactos 44.3 1.1E+02 0.0039 34.0 11.2 45 218-263 130-179 (478)
440 1geg_A Acetoin reductase; SDR 43.5 83 0.0028 30.9 9.1 60 80-148 3-62 (256)
441 2wyu_A Enoyl-[acyl carrier pro 43.4 45 0.0015 33.0 7.2 133 79-235 8-146 (261)
442 3v2g_A 3-oxoacyl-[acyl-carrier 43.4 1.1E+02 0.0037 30.6 10.1 135 78-236 30-166 (271)
443 3r3s_A Oxidoreductase; structu 43.2 79 0.0027 32.0 9.1 133 79-235 49-185 (294)
444 3l77_A Short-chain alcohol deh 43.1 97 0.0033 29.8 9.4 61 80-148 3-63 (235)
445 3h7a_A Short chain dehydrogena 43.1 92 0.0032 30.7 9.4 61 79-148 7-67 (252)
446 4gua_A Non-structural polyprot 43.1 24 0.00081 40.3 5.3 39 216-254 250-288 (670)
447 3gg2_A Sugar dehydrogenase, UD 42.8 1.4E+02 0.0048 32.7 11.6 35 88-129 9-43 (450)
448 3f9i_A 3-oxoacyl-[acyl-carrier 41.0 1.4E+02 0.0046 29.0 10.2 60 77-148 12-71 (249)
449 1h5q_A NADP-dependent mannitol 41.0 1E+02 0.0035 30.0 9.3 61 79-148 14-75 (265)
450 1edo_A Beta-keto acyl carrier 40.9 1.2E+02 0.0041 29.1 9.7 59 81-148 3-62 (244)
451 2ae2_A Protein (tropinone redu 40.6 2.3E+02 0.0078 27.7 11.9 61 79-148 9-69 (260)
452 1w6u_A 2,4-dienoyl-COA reducta 40.6 87 0.003 31.3 8.9 62 79-148 26-87 (302)
453 1qsg_A Enoyl-[acyl-carrier-pro 40.2 51 0.0017 32.7 7.0 36 79-121 9-45 (265)
454 3rku_A Oxidoreductase YMR226C; 40.1 1.8E+02 0.0061 29.4 11.2 65 79-148 33-98 (287)
455 3qiv_A Short-chain dehydrogena 39.9 1.2E+02 0.004 29.6 9.5 61 79-148 9-69 (253)
456 3ucx_A Short chain dehydrogena 39.6 91 0.0031 30.9 8.8 62 78-148 10-71 (264)
457 3svt_A Short-chain type dehydr 39.5 1.5E+02 0.005 29.5 10.4 62 79-148 11-74 (281)
458 4dcm_A Ribosomal RNA large sub 38.9 93 0.0032 33.2 9.2 95 78-234 38-135 (375)
459 4a7p_A UDP-glucose dehydrogena 38.6 1.1E+02 0.0037 33.7 9.8 119 85-253 12-146 (446)
460 3pgx_A Carveol dehydrogenase; 38.6 83 0.0028 31.4 8.3 62 78-148 14-88 (280)
461 3t7c_A Carveol dehydrogenase; 38.5 1.6E+02 0.0053 29.8 10.5 61 79-148 28-100 (299)
462 1y1p_A ARII, aldehyde reductas 38.4 3.1E+02 0.011 27.3 15.0 63 78-148 10-73 (342)
463 3v2h_A D-beta-hydroxybutyrate 38.4 1.3E+02 0.0045 30.1 9.9 62 79-148 25-87 (281)
464 1yb1_A 17-beta-hydroxysteroid 38.1 2E+02 0.0068 28.4 11.1 61 79-148 31-91 (272)
465 1g0o_A Trihydroxynaphthalene r 38.0 1.4E+02 0.0048 29.7 10.0 133 79-235 29-163 (283)
466 1vl8_A Gluconate 5-dehydrogena 38.0 1.2E+02 0.004 30.2 9.3 61 79-148 21-82 (267)
467 4fc7_A Peroxisomal 2,4-dienoyl 38.0 95 0.0032 31.0 8.7 62 79-148 27-88 (277)
468 3tfo_A Putative 3-oxoacyl-(acy 37.5 1.6E+02 0.0053 29.5 10.2 61 79-148 4-64 (264)
469 2uvd_A 3-oxoacyl-(acyl-carrier 37.3 1.9E+02 0.0064 28.1 10.6 61 79-148 4-65 (246)
470 4e6p_A Probable sorbitol dehyd 37.1 1.1E+02 0.0036 30.2 8.8 58 79-148 8-65 (259)
471 2bgk_A Rhizome secoisolaricire 37.0 95 0.0033 30.5 8.4 59 79-148 16-75 (278)
472 2vhw_A Alanine dehydrogenase; 36.8 54 0.0019 35.0 6.9 43 78-129 167-209 (377)
473 3sju_A Keto reductase; short-c 36.7 94 0.0032 31.1 8.4 61 79-148 24-84 (279)
474 1e7w_A Pteridine reductase; di 36.5 1.9E+02 0.0064 29.1 10.7 61 79-148 9-71 (291)
475 3uve_A Carveol dehydrogenase ( 36.3 1.2E+02 0.0039 30.4 9.0 61 79-148 11-87 (286)
476 3tsc_A Putative oxidoreductase 36.2 1.2E+02 0.0039 30.3 8.9 61 79-148 11-84 (277)
477 4imr_A 3-oxoacyl-(acyl-carrier 36.1 1.3E+02 0.0043 30.2 9.2 61 79-148 33-93 (275)
478 1gee_A Glucose 1-dehydrogenase 36.0 1.6E+02 0.0053 28.7 9.7 61 79-148 7-68 (261)
479 3fwz_A Inner membrane protein 35.9 1.3E+02 0.0044 26.8 8.4 53 80-148 8-60 (140)
480 3osu_A 3-oxoacyl-[acyl-carrier 35.4 1.5E+02 0.0053 28.8 9.6 133 79-235 4-140 (246)
481 1xq1_A Putative tropinone redu 35.0 1.9E+02 0.0065 28.2 10.2 61 79-148 14-74 (266)
482 2h7i_A Enoyl-[acyl-carrier-pro 34.7 43 0.0015 33.4 5.4 39 78-123 6-45 (269)
483 2vz8_A Fatty acid synthase; tr 34.7 26 0.0009 46.9 4.7 46 75-130 1664-1711(2512)
484 4dqx_A Probable oxidoreductase 34.6 1.4E+02 0.0047 29.9 9.3 130 79-235 27-159 (277)
485 1yxm_A Pecra, peroxisomal tran 34.5 1.8E+02 0.006 29.1 10.1 62 79-148 18-83 (303)
486 3dmg_A Probable ribosomal RNA 34.3 44 0.0015 35.9 5.7 52 175-253 100-151 (381)
487 3u5t_A 3-oxoacyl-[acyl-carrier 34.0 85 0.0029 31.4 7.5 134 79-236 27-162 (267)
488 3edm_A Short chain dehydrogena 33.9 81 0.0028 31.2 7.3 134 79-236 8-144 (259)
489 3v8b_A Putative dehydrogenase, 33.9 1.1E+02 0.0038 30.8 8.4 62 78-148 27-88 (283)
490 3oid_A Enoyl-[acyl-carrier-pro 33.9 1.3E+02 0.0044 29.8 8.8 61 79-148 4-65 (258)
491 3cxt_A Dehydrogenase with diff 33.8 1.9E+02 0.0065 29.2 10.3 61 79-148 34-94 (291)
492 4ibo_A Gluconate dehydrogenase 33.7 1.9E+02 0.0064 28.8 10.1 61 79-148 26-86 (271)
493 3slk_A Polyketide synthase ext 33.3 16 0.00054 43.4 2.1 39 74-122 341-381 (795)
494 1zem_A Xylitol dehydrogenase; 33.2 2.2E+02 0.0076 27.9 10.4 61 79-148 7-67 (262)
495 1spx_A Short-chain reductase f 33.0 88 0.003 31.0 7.4 62 79-148 6-69 (278)
496 3gvc_A Oxidoreductase, probabl 32.9 1.3E+02 0.0045 30.1 8.8 58 79-148 29-86 (277)
497 2ehd_A Oxidoreductase, oxidore 32.7 1.6E+02 0.0054 28.1 9.0 57 79-148 5-61 (234)
498 2qhx_A Pteridine reductase 1; 32.7 1.8E+02 0.0063 29.9 10.1 61 79-148 46-108 (328)
499 2x9g_A PTR1, pteridine reducta 32.3 1.2E+02 0.004 30.4 8.3 61 79-148 23-85 (288)
500 3ai3_A NADPH-sorbose reductase 32.0 2.4E+02 0.0081 27.6 10.4 61 79-148 7-68 (263)
No 1
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=100.00 E-value=2.7e-52 Score=453.75 Aligned_cols=212 Identities=29% Similarity=0.398 Sum_probs=181.5
Q ss_pred ecccccCCCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCC
Q 004787 9 IEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAA 88 (730)
Q Consensus 9 ~eg~~~~~~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAA 88 (730)
.+|..+..|.+.+|++....|...+.+..+.+.+.+ ......++.+++||++||+|+++|+++||++|||||||
T Consensus 85 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~~p~~------~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAa 158 (359)
T 4fzv_A 85 SEGGQSAAPSPASWACSPNLRCFTFDRGDISRFPPA------RPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 158 (359)
T ss_dssp C-----CCSSCHHHHSCSSCCEEECCTTCCCCCCCC------CBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCT
T ss_pred cccccccCCCcccccCCccceEEecCCCChhcCCCc------ccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCC
Confidence 456677788899998876566666666666554443 34567789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEecccccCCCcccCCCCCCCC
Q 004787 89 PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT------ANLIVTNHEAQHFPGCRANKNFSSAS 162 (730)
Q Consensus 89 PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~------~nv~vt~~Da~~fp~~~~~~~~~~~~ 162 (730)
|||||+|||+++. .|.|+|+|++.+|+..|++|++|++. .++.+++.|+..++..
T Consensus 159 PGGKT~~la~~~~---------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~---------- 219 (359)
T 4fzv_A 159 PGGKTLALLQTGC---------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL---------- 219 (359)
T ss_dssp TCHHHHHHHHTTC---------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH----------
T ss_pred ccHHHHHHHHhcC---------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh----------
Confidence 9999999998653 48999999999999999999999875 4789999998875421
Q ss_pred ccccccccccccccccEEEecCCCCCC--CccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCC
Q 004787 163 DKGIESESNMGQLLFDRVLCDVPCSGD--GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 240 (730)
Q Consensus 163 ~~~~~~~~~~~~~~FDrVL~DvPCSGd--Gtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p 240 (730)
....||+||+||||||+ |++|++|++|++|++.....|+.+|.+||.+|+++|||||+|||||||++|
T Consensus 220 ----------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 220 ----------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp ----------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred ----------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 23679999999999998 788999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHCC
Q 004787 241 VENEAVVAEILRKCE 255 (730)
Q Consensus 241 ~ENEaVV~~~L~~~~ 255 (730)
+|||+||+.+|+++.
T Consensus 290 ~ENE~vV~~~L~~~~ 304 (359)
T 4fzv_A 290 LQNEYVVQGAIELLA 304 (359)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHhCC
Confidence 999999999999865
No 2
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=100.00 E-value=4.6e-48 Score=435.56 Aligned_cols=379 Identities=23% Similarity=0.373 Sum_probs=287.7
Q ss_pred CccccCCCCCcccccccc-hhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCC--CCCEEEeecCCcchHH
Q 004787 17 IRPLPWYPNNLAWHSNFS-RMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQ--PDHFVLDMCAAPGSKT 93 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~-r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~--pg~~VLDmCAAPGsKT 93 (730)
.+++||+|+++.+..... ...+.+.+ .| ..|.+++||++||+++.+|+++ +|++|||||||||+||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt 132 (479)
T 2frx_A 64 LTPIPWCEEGFWIERDNEDALPLGSTA------EH-----LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKT 132 (479)
T ss_dssp CCEETTEEEEEC---------CGGGSH------HH-----HTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHH
T ss_pred eeecCCCCceEEEecCcccccCcccCh------HH-----hCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHH
Confidence 568899998764321100 00122222 22 4599999999999999999998 9999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccc
Q 004787 94 FQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173 (730)
Q Consensus 94 ~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~ 173 (730)
++||+++++ .|.|+|+|+++.|+..+++|++++|+.++.+++.|+..++.. .
T Consensus 133 ~~lA~~~~~--------~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--------------------~ 184 (479)
T 2frx_A 133 TQISARMNN--------EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA--------------------V 184 (479)
T ss_dssp HHHHHHTTT--------CSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--------------------S
T ss_pred HHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--------------------c
Confidence 999998753 589999999999999999999999999999999998775320 1
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
...||+||+||||||.|+++++|+++..|++.....++.+|.+||.+|+++|||||+|||||||++++|||+||+++|++
T Consensus 185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~ 264 (479)
T 2frx_A 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264 (479)
T ss_dssp TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHH
T ss_pred cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCcc
Q 004787 254 CEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 333 (730)
Q Consensus 254 ~~~~velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (730)
+++.++++++...+| |...|
T Consensus 265 ~~~~~~~~~~~~~~~------~~~~~------------------------------------------------------ 284 (479)
T 2frx_A 265 YPDAVEFLPLGDLFP------GANKA------------------------------------------------------ 284 (479)
T ss_dssp STTTEEECCCTTSST------TGGGG------------------------------------------------------
T ss_pred CCCceeccccccccc------ccccc------------------------------------------------------
Confidence 886666655432111 10000
Q ss_pred ccchhhcccccCCchhhhhccccCCceEEEcccCCCCCceEEEEEEEcCCCCccccccCCcccccCCCCCCCCccccCCc
Q 004787 334 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQD 413 (730)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (730)
+..+.|+|++||.++|+|||||+|+|.++.+.... .
T Consensus 285 ---------------------~~~~g~~r~~P~~~~~dGfF~A~l~k~~~~~~~~~---~-------------------- 320 (479)
T 2frx_A 285 ---------------------LTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPA---P-------------------- 320 (479)
T ss_dssp ---------------------BCTTSCEEECTTTTTSCCEEEEEEEECSCCCCCCC---C--------------------
T ss_pred ---------------------cccCCeEEECCCCCCcCccEEEEEEEcCCCCCccc---c--------------------
Confidence 11247899999999999999999999764322000 0
Q ss_pred ccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccC
Q 004787 414 TEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGI 493 (730)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 493 (730)
+.+.+ .
T Consensus 321 -----------------------------------------------------------------~~~~~---------~ 326 (479)
T 2frx_A 321 -----------------------------------------------------------------KYKVG---------N 326 (479)
T ss_dssp -----------------------------------------------------------------CCCCC---------C
T ss_pred -----------------------------------------------------------------ccccc---------c
Confidence 00000 0
Q ss_pred CCcccCC--ChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEEe
Q 004787 494 DPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ 571 (730)
Q Consensus 494 dP~~f~~--d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~~s~~vk~il~~n~~~g~~lkii~~GvK~F~rq 571 (730)
.||..+. +.+.|+.+.++|+++.. .+..++.|. +.||++......++ .+|||++.|+++.+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~p~~~~~~~-------~~lr~~r~G~~lg~~k 391 (479)
T 2frx_A 327 FPFSPVKDREAGQIRQAATGVGLNWD--ENLRLWQRD------KELWLFPVGIEALI-------GKVRFSRLGIKLAETH 391 (479)
T ss_dssp CSCEECCHHHHHHHHHHHHTTTBCCC--TTEEEEESS------SEEEEEEHHHHTTB-------TTBCCSEESEEEEEEE
T ss_pred CCccccchhhHHHHHHHHHHcCCCCC--CCceEEEEC------CEEEEeccccchhc-------cCcEEEecceEEEEEe
Confidence 1222221 23446777888988633 234677663 67999988765532 4699999999999876
Q ss_pred cCCCCCCcccceeeccChhhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEcC
Q 004787 572 TSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSG 646 (730)
Q Consensus 572 ~~~~~~~~~c~~Ri~~eGl~~l~p~i~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~~ 646 (730)
. =+||.++...-.+.+.-.++++.++.++....|..+.+....- ..-|-++|.+++
T Consensus 392 k--------~rf~Ps~~la~~l~~~~~~~~~~l~~~~~~~yL~Ge~i~~~~~-----------~~~G~vlv~~~g 447 (479)
T 2frx_A 392 N--------KGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDVYPQAA-----------PVADDVLVTFQH 447 (479)
T ss_dssp T--------TEEEECHHHHHHHBCSSSSSEEECCHHHHHHHHTTCCCCCSSC-----------CSCSEEEEEETT
T ss_pred c--------CCceEcHHHHHhcchhhcCcEEECCHHHHHHHhcCCCCcCCCC-----------CCCCEEEEEECC
Confidence 2 2899999999888777778899999999999998777654311 135877777764
No 3
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=100.00 E-value=7e-46 Score=414.92 Aligned_cols=371 Identities=23% Similarity=0.376 Sum_probs=276.1
Q ss_pred ccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHH
Q 004787 18 RPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLL 97 (730)
Q Consensus 18 ~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLa 97 (730)
.++||.|+++. . . .+.+.+ .| ..|.+++||.+||+++.+|++++|++|||||||||+||++||
T Consensus 62 ~~~~~~~~~~~-~---~--~~~~~~---~~--------~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA 124 (456)
T 3m4x_A 62 QPAPYSNEGFL-G---T--VNGKSF---LH--------QAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLA 124 (456)
T ss_dssp CBCTTCTTEEE-S---C--CCTTSH---HH--------HTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHH
T ss_pred CCCCCCcceEE-c---C--CCCCCh---HH--------hCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHH
Confidence 48999999763 1 1 122222 22 359999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccc
Q 004787 98 EIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 177 (730)
Q Consensus 98 e~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~F 177 (730)
+.+.+ .|.|+|+|+++.|+..+++|++|+|..|+.+++.|+..++.. ....|
T Consensus 125 ~~~~~--------~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~--------------------~~~~F 176 (456)
T 3m4x_A 125 AQMKG--------KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH--------------------FSGFF 176 (456)
T ss_dssp HHHTT--------CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH--------------------HTTCE
T ss_pred HHcCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh--------------------ccccC
Confidence 98864 589999999999999999999999999999999998765320 12679
Q ss_pred cEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCc
Q 004787 178 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 257 (730)
Q Consensus 178 DrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~ 257 (730)
|+||+||||||.|++|++|+++..|++.....+..+|.+||.+|+++|||||+|||||||++|+|||+||..+|++++
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~-- 254 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP-- 254 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS--
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred EEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCccccch
Q 004787 258 VELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQ 337 (730)
Q Consensus 258 velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (730)
++++++.. .+++ .+|+..|...
T Consensus 255 ~~l~~~~~-~~~~--~~~~~~~~~~------------------------------------------------------- 276 (456)
T 3m4x_A 255 VTIEEIPL-TQSV--SSGRSEWGSV------------------------------------------------------- 276 (456)
T ss_dssp EEEECCCC-SSCC--EECCGGGSSS-------------------------------------------------------
T ss_pred CEEEeccc-cccc--cccccccccc-------------------------------------------------------
Confidence 89988742 1211 2233333100
Q ss_pred hhcccccCCchhhhhccccCCceEEEcccCCCCCceEEEEEEEcCCCCccccccCCcccccCCCCCCCCccccCCccccc
Q 004787 338 VEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEV 417 (730)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (730)
-.++.|+|++||.++|+|||||+|+|.+..+.. +..
T Consensus 277 -----------------~~~~~~~r~~P~~~~~dGFF~A~l~k~~~~~~~------~~~--------------------- 312 (456)
T 3m4x_A 277 -----------------AGLEKTIRIWPHKDQGEGHFVAKLTFHGQNQMH------KEK--------------------- 312 (456)
T ss_dssp -----------------TTGGGSEEECTTTSSSSCEEEEEEEECSCCCCC------C-----------------------
T ss_pred -----------------cccCCeEEECCCCCCCcCeEEEEEEECCCCccc------ccc---------------------
Confidence 014579999999999999999999997652100 000
Q ss_pred ccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccCCCcc
Q 004787 418 NGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVI 497 (730)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~dP~~ 497 (730)
......+.+ ..+
T Consensus 313 ---------------------------------------------------------~~~~~~~~~---------~~~-- 324 (456)
T 3m4x_A 313 ---------------------------------------------------------KTRKKSKVQ---------MTK-- 324 (456)
T ss_dssp ----------------------------------------------------------------CS---------CCH--
T ss_pred ---------------------------------------------------------ccccccccc---------CcH--
Confidence 000000000 000
Q ss_pred cCCChhhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEEecCCCCC
Q 004787 498 FFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 577 (730)
Q Consensus 498 f~~d~~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~~s~~vk~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~ 577 (730)
...+.|+....-|++. + ...++.|+ ..||++-....+ -.+|||+..|+++=+-..
T Consensus 325 --~~~~~~~~~~~~~~~~---~-~~~~~~~~------~~~~~~p~~~~~--------~~~l~~~r~G~~lg~~kk----- 379 (456)
T 3m4x_A 325 --EQEKLWTEFSNDFHYE---A-TGRLLVFN------DHLWEVPELAPS--------LDGLKVVRTGLHLGDFKK----- 379 (456)
T ss_dssp --HHHHHHHHHHHHTTCC---C-CSEEEEET------TEEEEECTTCCC--------CTTCCEEEESEEEEEEET-----
T ss_pred --HHHHHHHHHHHHhccC---C-CCceEEEC------CEEEEeccCccc--------ccCCeEEEcCceeeEEeC-----
Confidence 0112344444444442 2 23565553 689988765321 157999999999977542
Q ss_pred CcccceeeccChhhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEcC
Q 004787 578 SAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSG 646 (730)
Q Consensus 578 ~~~c~~Ri~~eGl~~l~p~i~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~~ 646 (730)
=+|+.++...-.+.+--.++.+.++.++....|....+.... ..|-++|.+.+
T Consensus 380 ---~~f~p~~~la~~l~~~~~~~~~~l~~~~~~~yl~ge~i~~~~-------------~~g~~lv~~~g 432 (456)
T 3m4x_A 380 ---NRFEPSYALALATKKIENIPCLPITQKEWQSYTAGETFQRDG-------------NQGWVLLVLDK 432 (456)
T ss_dssp ---TEEEECHHHHHTCCCGGGSCEEEECHHHHHHHHHTCCEECSC-------------CCEEEEEEETT
T ss_pred ---CceeECHHHHHhcCccccCcEEEcCHHHHHHHhCCCCcccCC-------------CCCEEEEEECC
Confidence 278888887777666555678999999999999876654321 14777777764
No 4
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=100.00 E-value=7e-45 Score=388.54 Aligned_cols=181 Identities=26% Similarity=0.369 Sum_probs=149.4
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
+.|.+++||.+||+++.+|++++|++|||||||||+||++||+++++ .|.|+|+|+++.|+..+++|++|+|
T Consensus 80 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~--------~g~V~a~D~~~~~l~~~~~n~~r~g 151 (309)
T 2b9e_A 80 RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN--------QGKIFAFDLDAKRLASMATLLARAG 151 (309)
T ss_dssp HTTSEEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTT--------CSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 35999999999999999999999999999999999999999998864 5899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh--hcccccccchHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR--KWNVGLGNGLHSL 213 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~--~w~~~~~~~L~~l 213 (730)
..|+.+++.|+..++.. ......||+||+||||||.|+++++|++++ .|++.+...++.+
T Consensus 152 ~~~v~~~~~D~~~~~~~------------------~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~ 213 (309)
T 2b9e_A 152 VSCCELAEEDFLAVSPS------------------DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGF 213 (309)
T ss_dssp CCSEEEEECCGGGSCTT------------------CGGGTTEEEEEECCCCCC------------------CCHHHHHHH
T ss_pred CCeEEEEeCChHhcCcc------------------ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHH
Confidence 99999999998775421 001246999999999999999999999733 4678888999999
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 214 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
|.+||.+|+++|+ ||+|||||||++++|||+||.++|++++++++++++
T Consensus 214 Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~~ 262 (309)
T 2b9e_A 214 QQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPA 262 (309)
T ss_dssp HHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECCC
T ss_pred HHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCCCcEEEecc
Confidence 9999999999997 999999999999999999999999998766888764
No 5
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=100.00 E-value=3.9e-43 Score=375.06 Aligned_cols=246 Identities=32% Similarity=0.514 Sum_probs=197.2
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
.++++|+|+++.+ ......+ .....| ..|.++.||.+||+++.+|++++|++|||+|||||+||++|
T Consensus 70 ~~~~~~~~~~~~~--~~~~~~~------~~~~~~-----~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~l 136 (315)
T 1ixk_A 70 FKRVPWAKEGFCL--TREPFSI------TSTPEF-----LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYL 136 (315)
T ss_dssp EEEETTEEEEEEE--EECSSCG------GGSHHH-----HTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHH
T ss_pred eeECCCCCceEEE--eCCCCCc------ccChhH-----hcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHH
Confidence 3578999986532 1111112 222333 34999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
++.+++ .|.|+|+|+++.|+..++++++++|..++.+++.|+..++.. ...
T Consensus 137 a~~~~~--------~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~---------------------~~~ 187 (315)
T 1ixk_A 137 AQLMRN--------DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL---------------------NVE 187 (315)
T ss_dssp HHHTTT--------CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG---------------------CCC
T ss_pred HHHhCC--------CCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc---------------------ccc
Confidence 998753 589999999999999999999999998999999998775421 257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
||+||+|+||||.|+++++|++++.|++.....++.+|.++|.+++++|||||+|||||||++++|||+||.++|++++
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~- 266 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD- 266 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS-
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCC-
Confidence 9999999999999999999999989999999999999999999999999999999999999999999999999999874
Q ss_pred cEEEEecCccCCccccCCCcccceeccCCccccchhhhhhhhcccccCCCCCCCCCCCCcCCCCCCCCCccccCCccccc
Q 004787 257 SVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQ 336 (730)
Q Consensus 257 ~velvd~s~~lP~L~~~~Gl~~W~v~~~~~~~~~~~~~~~~~~~~~~~smfp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (730)
++++++.. ..+|+..|.... |.
T Consensus 267 -~~~~~~~~------~~~~~~~~~~~~-----------------------~~---------------------------- 288 (315)
T 1ixk_A 267 -VELLPLKY------GEPALTNPFGIE-----------------------LS---------------------------- 288 (315)
T ss_dssp -EEEECCCS------SEECCSSGGGCC-----------------------CC----------------------------
T ss_pred -CEEecCCc------cccCcccccccc-----------------------cc----------------------------
Confidence 88887631 234555553110 00
Q ss_pred hhhcccccCCchhhhhccccCCceEEEcccCCCCCceEEEEEEEc
Q 004787 337 QVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 381 (730)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~rc~Ri~Ph~q~TgGFFvAvl~K~ 381 (730)
. .+++|+|++||.++|+|||||+|+|+
T Consensus 289 -------------~-----~~~~~~r~~P~~~~~dGfF~A~l~k~ 315 (315)
T 1ixk_A 289 -------------E-----EIKNARRLYPDVHETSGFFIAKIRKL 315 (315)
T ss_dssp -------------G-----GGGGSEEECTTTSSSCSEEEEEEEEC
T ss_pred -------------c-----ccCCEEEECCCCCCcccEEEEEEEEC
Confidence 0 14689999999999999999999984
No 6
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=100.00 E-value=4e-43 Score=393.27 Aligned_cols=204 Identities=32% Similarity=0.526 Sum_probs=177.6
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
.+++||.|+++.+.- ...+.+.+ .| ..|.++.||.+||+++.+|++++|++|||||||||+||++|
T Consensus 54 ~~~~~~~~~g~~l~~---~~~~~~~~---~~--------~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~L 119 (464)
T 3m6w_A 54 LRPIPWCQEGFYYPE---EARPGPHP---FF--------YAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHL 119 (464)
T ss_dssp CEEETTEEEEEECCT---TCCCSSSH---HH--------HTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHH
T ss_pred ceecCCCCceEEECC---CCCcccCh---HH--------hCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHH
Confidence 578999999764421 11122222 22 35999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
|+++.+ .|.|+|+|+++.|+..+++|++++|.. +.+++.|+..++.. ....
T Consensus 120 A~~~~~--------~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~--------------------~~~~ 170 (464)
T 3m6w_A 120 AARMGG--------KGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA--------------------FGTY 170 (464)
T ss_dssp HHHTTT--------CSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH--------------------HCSC
T ss_pred HHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh--------------------cccc
Confidence 998764 589999999999999999999999998 89999988765320 1267
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
||+||+||||||.|+++++|++...|++.....+..+|.+||..|+++|||||+|||||||++++|||+||..+|++++
T Consensus 171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~- 249 (464)
T 3m6w_A 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHP- 249 (464)
T ss_dssp EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT-
T ss_pred CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCC-
Confidence 9999999999999999999999889999999999999999999999999999999999999999999999999999985
Q ss_pred cEEEEecC
Q 004787 257 SVELVDVS 264 (730)
Q Consensus 257 ~velvd~s 264 (730)
.++++++.
T Consensus 250 ~~~l~~~~ 257 (464)
T 3m6w_A 250 EFRLEDAR 257 (464)
T ss_dssp TEEEECCC
T ss_pred CcEEEecc
Confidence 58888764
No 7
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-39 Score=361.41 Aligned_cols=204 Identities=30% Similarity=0.441 Sum_probs=175.7
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
..+.+|+|+++.+. .+..+...+.| ..|.++.||.+||+++.+|++++|++|||+|||||+||++|
T Consensus 212 ~~~~~~~~~~~~~~---~~~~~~~~~~~-----------~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~l 277 (450)
T 2yxl_A 212 VVRSERVPTILKIK---GPYNFDTSSAF-----------NEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHL 277 (450)
T ss_dssp EEECSSCTTEEEEE---SCCCTTSCHHH-----------HTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHH
T ss_pred ceecCccCceEEeC---CCCCcccCchh-----------hCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHH
Confidence 35789999976553 12233333322 34999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
++.+.+ .|.|+|+|+++.|+..++++++++|..++.+.+.|+..++.. .....
T Consensus 278 a~~~~~--------~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-------------------~~~~~ 330 (450)
T 2yxl_A 278 AELMKN--------KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-------------------IGEEV 330 (450)
T ss_dssp HHHTTT--------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-------------------SCSSC
T ss_pred HHHcCC--------CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-------------------hccCC
Confidence 998753 489999999999999999999999999999999998775421 11257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
||+||+|+||||.|+++++|++++.|++.+...++.+|.++|.++.++|||||+|||||||++++|||++|..+|++++
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~- 409 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHP- 409 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCS-
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC-
Confidence 9999999999999999999999888999999999999999999999999999999999999999999999999999875
Q ss_pred cEEEEe
Q 004787 257 SVELVD 262 (730)
Q Consensus 257 ~velvd 262 (730)
.+++++
T Consensus 410 ~~~~~~ 415 (450)
T 2yxl_A 410 EFKLVP 415 (450)
T ss_dssp SCEECC
T ss_pred CCEEee
Confidence 366554
No 8
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=100.00 E-value=5.5e-39 Score=335.73 Aligned_cols=179 Identities=35% Similarity=0.540 Sum_probs=148.9
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
..|.++.|+.+|++++.+|++++|++|||+|||||++|.+|++.+.+ .+.|+|+|+++.|+..++++++++|
T Consensus 61 ~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~--------~~~v~avD~~~~~l~~~~~~~~~~g 132 (274)
T 3ajd_A 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKN--------KGTIVAVEISKTRTKALKSNINRMG 132 (274)
T ss_dssp HTTSEEECCSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTT--------CSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hCCeEEEeCHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCC--------CCEEEEECCCHHHHHHHHHHHHHhC
Confidence 35999999999999999999999999999999999999999998753 4899999999999999999999999
Q ss_pred CCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 136 ~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
..++.+.+.|+..++.. .......||+||+|+||||.|+++++| .|+......+...|.
T Consensus 133 ~~~v~~~~~D~~~~~~~-----------------~~~~~~~fD~Vl~d~Pcs~~g~~~~~p----~~~~~~~~~~~~~~~ 191 (274)
T 3ajd_A 133 VLNTIIINADMRKYKDY-----------------LLKNEIFFDKILLDAPCSGNIIKDKNR----NVSEEDIKYCSLRQK 191 (274)
T ss_dssp CCSEEEEESCHHHHHHH-----------------HHHTTCCEEEEEEEECCC----------------HHHHTGGGTCHH
T ss_pred CCcEEEEeCChHhcchh-----------------hhhccccCCEEEEcCCCCCCcccccCC----CCCHHHHHHHHHHHH
Confidence 98999999998764310 000125799999999999999999987 577788888889999
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecC
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s 264 (730)
++|.+++++|||||+|||||||++++|||++|.++|+++. .++++++.
T Consensus 192 ~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~-~~~~~~~~ 239 (274)
T 3ajd_A 192 ELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRN-DVELIIIK 239 (274)
T ss_dssp HHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCS-SEEEECCC
T ss_pred HHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCC-CcEEecCc
Confidence 9999999999999999999999999999999999999875 68888764
No 9
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=100.00 E-value=1.8e-37 Score=344.25 Aligned_cols=200 Identities=32% Similarity=0.417 Sum_probs=169.7
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
..+.+|+|+++.+.- ...+...+. ...|.++.||.+|++++.+|++++|++|||+|||||+||.++
T Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~~-----------~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~l 264 (429)
T 1sqg_A 199 GFPHADYPDAVRLET---PAPVHALPG-----------FEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHI 264 (429)
T ss_dssp EECCTTCTTEEEESS---CCCGGGSTT-----------GGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHH
T ss_pred eeecCCCCCEEEECC---CCCcccChH-----------HhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHH
Confidence 356789999765431 112333222 245999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
++.+. .|.|+|+|+++.|+..++++++++|.. +.+...|+..++. ......
T Consensus 265 a~~~~---------~~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~-------------------~~~~~~ 315 (429)
T 1sqg_A 265 LEVAP---------EAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQ-------------------WCGEQQ 315 (429)
T ss_dssp HHHCT---------TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHH-------------------HHTTCC
T ss_pred HHHcC---------CCEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchh-------------------hcccCC
Confidence 99853 489999999999999999999999974 6778888776431 011257
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~ 256 (730)
||+||+|+||||.|+++++|++.+.|++.+...++.+|.++|.+++++|||||+|||||||++++|||.+|..+|++++
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~- 394 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA- 394 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT-
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC-
Confidence 9999999999999999999999888999999999999999999999999999999999999999999999999999875
Q ss_pred cEEE
Q 004787 257 SVEL 260 (730)
Q Consensus 257 ~vel 260 (730)
.+++
T Consensus 395 ~~~~ 398 (429)
T 1sqg_A 395 DAEL 398 (429)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 3444
No 10
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.69 E-value=5.7e-17 Score=178.37 Aligned_cols=182 Identities=16% Similarity=0.128 Sum_probs=139.0
Q ss_pred CccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHH
Q 004787 17 IRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQL 96 (730)
Q Consensus 17 ~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qL 96 (730)
+.++....+++.|.++... .+++|.+..|..+..+...++ ++|.+|||+|||+|++|+++
T Consensus 173 ~~~~~v~E~g~~f~vd~~~------------------~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~ 232 (393)
T 4dmg_A 173 PEVLEVEEDGLRFPIPLAL------------------AQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRA 232 (393)
T ss_dssp CSEEEEEETTEEEEEETTT------------------CCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHH
T ss_pred CCcEEEEECCEEEEEechh------------------ccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHH
Confidence 4455556677766665432 457899999998877665543 57999999999999999999
Q ss_pred HHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCcccccccccccccc
Q 004787 97 LEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL 176 (730)
Q Consensus 97 ae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (730)
|.. + .. |+|+|+|+.++..+++|+++++..+ .+.+.|+..+... . ...
T Consensus 233 a~~--g--------a~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~-------------------~-~~~ 280 (393)
T 4dmg_A 233 ARK--G--------AY-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRG-------------------L-EGP 280 (393)
T ss_dssp HHT--T--------CE-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHT-------------------C-CCC
T ss_pred HHc--C--------Ce-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHH-------------------h-cCC
Confidence 874 1 24 9999999999999999999998864 4557777653210 0 133
Q ss_pred ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcH--HHHHHHHHHC
Q 004787 177 FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKC 254 (730)
Q Consensus 177 FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENE--aVV~~~L~~~ 254 (730)
||+|++||||-..+ ..........+.+++..++++|+|||+|+|+|||.++.+++ .+|..++.+.
T Consensus 281 fD~Ii~dpP~f~~~-------------~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~ 347 (393)
T 4dmg_A 281 FHHVLLDPPTLVKR-------------PEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADL 347 (393)
T ss_dssp EEEEEECCCCCCSS-------------GGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCcCCCC-------------HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999984322 11233456678899999999999999999999999999888 7888888887
Q ss_pred CCcEEEEec
Q 004787 255 EGSVELVDV 263 (730)
Q Consensus 255 ~~~velvd~ 263 (730)
+..++++..
T Consensus 348 g~~~~i~~~ 356 (393)
T 4dmg_A 348 GRRLRVHRV 356 (393)
T ss_dssp TCCEEEEEE
T ss_pred CCeEEEEEE
Confidence 777777653
No 11
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.67 E-value=3.4e-16 Score=160.74 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=106.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.++||++|||+|||||++|.++++.++. +|.|+|+|+++.++..|.+.+++. .|+.+..+|+......
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~--------~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~- 140 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIEL--------NGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSY- 140 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTT--------TSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGT-
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCC--------CCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhh-
Confidence 45899999999999999999999998863 699999999999987777666553 6888899998753210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~-lLKpGGrLV 232 (730)
......||+|++|++- ..|.++|...++ +|||||+||
T Consensus 141 -----------------~~~~~~~D~I~~d~a~-------------------------~~~~~il~~~~~~~LkpGG~lv 178 (232)
T 3id6_C 141 -----------------KSVVENVDVLYVDIAQ-------------------------PDQTDIAIYNAKFFLKVNGDML 178 (232)
T ss_dssp -----------------TTTCCCEEEEEECCCC-------------------------TTHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------hccccceEEEEecCCC-------------------------hhHHHHHHHHHHHhCCCCeEEE
Confidence 0112579999999761 124556655444 999999999
Q ss_pred EE---cC---CCCCCCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004787 233 YS---TC---SMNPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (730)
Q Consensus 233 YS---TC---Sl~p~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (730)
++ +| +++|.||.+.+..+|++++ |++++.....|
T Consensus 179 isik~~~~d~t~~~~e~~~~~~~~L~~~g--f~~~~~~~l~p 218 (232)
T 3id6_C 179 LVIKARSIDVTKDPKEIYKTEVEKLENSN--FETIQIINLDP 218 (232)
T ss_dssp EEEC-------CCSSSSTTHHHHHHHHTT--EEEEEEEECTT
T ss_pred EEEccCCcccCCCHHHHHHHHHHHHHHCC--CEEEEEeccCC
Confidence 77 89 9999999999999999875 88887654444
No 12
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.58 E-value=5.2e-15 Score=161.53 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=128.1
Q ss_pred cccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
+.+|.+..|.....+.. +. ++.+|||+|||+|+++..++.. .+.|+|+|+++..+..+++|++.+
T Consensus 190 ~~~g~f~~~~~~~~~~~---~~-~~~~VLDlg~G~G~~~~~la~~-----------~~~v~~vD~s~~~~~~a~~n~~~n 254 (382)
T 1wxx_A 190 QKTGAYLDQRENRLYME---RF-RGERALDVFSYAGGFALHLALG-----------FREVVAVDSSAEALRRAEENARLN 254 (382)
T ss_dssp SCCCCCGGGHHHHHHGG---GC-CEEEEEEETCTTTHHHHHHHHH-----------EEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccCccccchHHHHHHHH---hc-CCCeEEEeeeccCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHc
Confidence 45677777766554433 33 7899999999999999999886 268999999999999999999999
Q ss_pred CCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004787 135 CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (730)
Q Consensus 135 g~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ 214 (730)
+..++.+...|+..+... .......||.|++|||+.+... .........+
T Consensus 255 ~~~~~~~~~~d~~~~~~~-----------------~~~~~~~fD~Ii~dpP~~~~~~-------------~~~~~~~~~~ 304 (382)
T 1wxx_A 255 GLGNVRVLEANAFDLLRR-----------------LEKEGERFDLVVLDPPAFAKGK-------------KDVERAYRAY 304 (382)
T ss_dssp TCTTEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCCCSCCST-------------TSHHHHHHHH
T ss_pred CCCCceEEECCHHHHHHH-----------------HHhcCCCeeEEEECCCCCCCCh-------------hHHHHHHHHH
Confidence 998888999988764210 0001357999999999765431 1223445678
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCCCCc--HHHHHHHHHHCCCcEEEEec
Q 004787 215 VQIAMRGISLLKVGGRIVYSTCSMNPVEN--EAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVYSTCSl~p~EN--EaVV~~~L~~~~~~velvd~ 263 (730)
.+++..++++|+|||+|+|+|||.+..++ +.++..++.+.+..++++..
T Consensus 305 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~ 355 (382)
T 1wxx_A 305 KEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEK 355 (382)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 89999999999999999999999888876 67888888887777888764
No 13
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.54 E-value=1.7e-14 Score=169.49 Aligned_cols=181 Identities=12% Similarity=0.024 Sum_probs=131.5
Q ss_pred CCccccCCCCCcccccccchhhhcchhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHH
Q 004787 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQ 95 (730)
Q Consensus 16 ~~~~~pw~p~~l~~~~~~~r~~lrk~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~q 95 (730)
.+.++++.++++.|.++... .+++|.+..|.....+...+ .+|.+|||+|||+|+.+++
T Consensus 498 ~~~~~~v~E~g~~~~v~~~~------------------~~~tG~f~d~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~ 556 (703)
T 3v97_A 498 KGEFLEVTEYNAHLWVNLTD------------------YLDTGLFLDHRIARRMLGQM---SKGKDFLNLFSYTGSATVH 556 (703)
T ss_dssp CSCCEEEEETTEEEEECSSS------------------SSSCSCCGGGHHHHHHHHHH---CTTCEEEEESCTTCHHHHH
T ss_pred CCceEEEEECCEEEEEeccc------------------cccCCCcccHHHHHHHHHHh---cCCCcEEEeeechhHHHHH
Confidence 35556667777777665432 34678888888776655443 3689999999999999999
Q ss_pred HHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccc
Q 004787 96 LLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 173 (730)
Q Consensus 96 Lae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~ 173 (730)
++.. + ...|+|+|+|+.++..+++|+++++.. ++.+.++|+..+.. ..
T Consensus 557 aa~~--g--------a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~--------------------~~ 606 (703)
T 3v97_A 557 AGLG--G--------ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLR--------------------EA 606 (703)
T ss_dssp HHHT--T--------CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH--------------------HC
T ss_pred HHHC--C--------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH--------------------hc
Confidence 8762 1 468999999999999999999999976 79999999876321 11
Q ss_pred cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 174 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 174 ~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
...||+|++||||.+.+.- ..........+.+|+..++++|+|||+|++|+|+-....++ ..|.+
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~-----------~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~----~~l~~ 671 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKR-----------MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDL----DGLAK 671 (703)
T ss_dssp CCCEEEEEECCCSBC------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCH----HHHHH
T ss_pred CCCccEEEECCccccCCcc-----------chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCH----HHHHH
Confidence 2679999999999664421 01123445678899999999999999999999996666664 44555
Q ss_pred CCCcEEEEe
Q 004787 254 CEGSVELVD 262 (730)
Q Consensus 254 ~~~~velvd 262 (730)
.+-.++.+.
T Consensus 672 ~g~~~~~i~ 680 (703)
T 3v97_A 672 LGLKAQEIT 680 (703)
T ss_dssp TTEEEEECT
T ss_pred cCCceeeee
Confidence 553333433
No 14
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.51 E-value=2.1e-14 Score=157.41 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=126.4
Q ss_pred cccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc
Q 004787 55 NEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM 134 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl 134 (730)
+++|.+..|..+..+...+ .++.+|||+|||+|+++.+++.. +.+.|+|+|+++..+..+++|++++
T Consensus 200 ~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~----------g~~~V~~vD~s~~al~~a~~n~~~n 266 (396)
T 3c0k_A 200 HKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG----------GCSQVVSVDTSQEALDIARQNVELN 266 (396)
T ss_dssp STTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 4557777776665444333 57899999999999999999864 1368999999999999999999999
Q ss_pred CC-C-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHH
Q 004787 135 CT-A-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS 212 (730)
Q Consensus 135 g~-~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~ 212 (730)
+. . ++.+...|+..+... .......||.|++|||+.+... ........
T Consensus 267 gl~~~~v~~~~~D~~~~~~~-----------------~~~~~~~fD~Ii~dpP~~~~~~-------------~~~~~~~~ 316 (396)
T 3c0k_A 267 KLDLSKAEFVRDDVFKLLRT-----------------YRDRGEKFDVIVMDPPKFVENK-------------SQLMGACR 316 (396)
T ss_dssp TCCGGGEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCSSTTTCS-------------SSSSCCCT
T ss_pred CCCccceEEEECCHHHHHHH-----------------HHhcCCCCCEEEECCCCCCCCh-------------hHHHHHHH
Confidence 98 6 899999988764210 0001257999999999765331 11122334
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcCCCCCC--CcHHHHHHHHHHCCCcEEEEec
Q 004787 213 LQVQIAMRGISLLKVGGRIVYSTCSMNPV--ENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 213 lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~--ENEaVV~~~L~~~~~~velvd~ 263 (730)
.+.+++..++++|+|||+|++|+|+.+.. +++.+|..++.+.+..++++..
T Consensus 317 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~ 369 (396)
T 3c0k_A 317 GYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 56789999999999999999999998776 6688898888877767777753
No 15
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.50 E-value=4e-14 Score=155.02 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=122.8
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
++|.+..|.....+...++ +++.+|||+|||+|+++..++.. +.+.|+|+|+++..+..+++|+++++
T Consensus 197 ~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~----------g~~~v~~vD~s~~~l~~a~~n~~~n~ 264 (396)
T 2as0_A 197 KTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA----------GADEVIGIDKSPRAIETAKENAKLNG 264 (396)
T ss_dssp SSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred ccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 3466655555544433332 58999999999999999999864 13689999999999999999999999
Q ss_pred CC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHH
Q 004787 136 TA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQ 214 (730)
Q Consensus 136 ~~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ 214 (730)
.. ++.+...|+..+... .......||.|++|||+.+... .........+
T Consensus 265 ~~~~v~~~~~d~~~~~~~-----------------~~~~~~~fD~Vi~dpP~~~~~~-------------~~~~~~~~~~ 314 (396)
T 2as0_A 265 VEDRMKFIVGSAFEEMEK-----------------LQKKGEKFDIVVLDPPAFVQHE-------------KDLKAGLRAY 314 (396)
T ss_dssp CGGGEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCCCSCSSG-------------GGHHHHHHHH
T ss_pred CCccceEEECCHHHHHHH-----------------HHhhCCCCCEEEECCCCCCCCH-------------HHHHHHHHHH
Confidence 87 899999988764210 0001257999999999755321 1122334567
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCCCCCCc--HHHHHHHHHHCCCcEEEEe
Q 004787 215 VQIAMRGISLLKVGGRIVYSTCSMNPVEN--EAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVYSTCSl~p~EN--EaVV~~~L~~~~~~velvd 262 (730)
.+++..++++|+|||+|+|+||+.+..++ +.++..++...+..++++.
T Consensus 315 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 315 FNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp HHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 88999999999999999999999776654 6777777777766677765
No 16
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.44 E-value=1.4e-13 Score=148.01 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=113.8
Q ss_pred cccCcEEEccccccchhhccC-CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Q 004787 55 NEIGNITRQEAVSMVPPLFLD-VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133 (730)
Q Consensus 55 ~~~G~i~~Qd~~Smlp~llLd-~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR 133 (730)
.++|.+..|.........++. ..++.+|||+|||+|+.+..++.. ...|+|+|+|+..+..+++|++.
T Consensus 129 ~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~-----------ga~V~~VD~s~~al~~a~~n~~~ 197 (332)
T 2igt_A 129 RHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA-----------GAEVTHVDASKKAIGWAKENQVL 197 (332)
T ss_dssp SCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT-----------TCEEEEECSCHHHHHHHHHHHHH
T ss_pred ccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHH
Confidence 345777777765544443343 457889999999999999998763 23899999999999999999999
Q ss_pred cCCCc--eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchH
Q 004787 134 MCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLH 211 (730)
Q Consensus 134 lg~~n--v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~ 211 (730)
++..+ +.+.+.|+..+... .......||.|++||||.+.+.- .......
T Consensus 198 ~gl~~~~v~~i~~D~~~~l~~-----------------~~~~~~~fD~Ii~dPP~~~~~~~------------~~~~~~~ 248 (332)
T 2igt_A 198 AGLEQAPIRWICEDAMKFIQR-----------------EERRGSTYDIILTDPPKFGRGTH------------GEVWQLF 248 (332)
T ss_dssp HTCTTSCEEEECSCHHHHHHH-----------------HHHHTCCBSEEEECCCSEEECTT------------CCEEEHH
T ss_pred cCCCccceEEEECcHHHHHHH-----------------HHhcCCCceEEEECCccccCCch------------HHHHHHH
Confidence 98864 88998888764210 00012579999999998775521 0112234
Q ss_pred HHHHHHHHHHHhhccCCCE-EEEEcCCCCCCCcHHHHHHHHH----HCCCcEE
Q 004787 212 SLQVQIAMRGISLLKVGGR-IVYSTCSMNPVENEAVVAEILR----KCEGSVE 259 (730)
Q Consensus 212 ~lQ~~IL~rAl~lLKpGGr-LVYSTCSl~p~ENEaVV~~~L~----~~~~~ve 259 (730)
..+.+++..++++|+|||. ++.++|+... ++.....+++ +.+..++
T Consensus 249 ~~~~~ll~~~~~~LkpgG~lli~~~~~~~~--~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 249 DHLPLMLDICREILSPKALGLVLTAYSIRA--SFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHHHHHHHTBCTTCCEEEEEECCTTS--CHHHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHHHhcCcCcEEEEEECCCCCC--CHHHHHHHHHHHHHHcCCeEE
Confidence 5567899999999999999 5566777543 3344444444 5554444
No 17
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.40 E-value=4.5e-13 Score=146.71 Aligned_cols=160 Identities=13% Similarity=0.047 Sum_probs=114.3
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
++|.+..|.....+...++ .+|.+|||+|||+|+.+..+|.. + ...|+|+|+++..+..+++|++.++
T Consensus 192 ~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~-g---------a~~V~~vD~s~~al~~A~~N~~~n~ 259 (385)
T 2b78_A 192 MTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG-G---------AMATTSVDLAKRSRALSLAHFEANH 259 (385)
T ss_dssp CCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT-T---------BSEEEEEESCTTHHHHHHHHHHHTT
T ss_pred cCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC-C---------CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 3455544544433333332 67899999999999999998763 1 3589999999999999999999999
Q ss_pred CC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHH
Q 004787 136 TA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSL 213 (730)
Q Consensus 136 ~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~l 213 (730)
.. ++.+...|+..+... .......||.|++|||+.+.+. .........
T Consensus 260 ~~~~~v~~~~~D~~~~l~~-----------------~~~~~~~fD~Ii~DPP~~~~~~-------------~~~~~~~~~ 309 (385)
T 2b78_A 260 LDMANHQLVVMDVFDYFKY-----------------ARRHHLTYDIIIIDPPSFARNK-------------KEVFSVSKD 309 (385)
T ss_dssp CCCTTEEEEESCHHHHHHH-----------------HHHTTCCEEEEEECCCCC------------------CCCCHHHH
T ss_pred CCccceEEEECCHHHHHHH-----------------HHHhCCCccEEEECCCCCCCCh-------------hhHHHHHHH
Confidence 86 899999988763210 0011247999999999865320 112234456
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCCCC--CCcHHHHHHHHHHCCCc
Q 004787 214 QVQIAMRGISLLKVGGRIVYSTCSMNP--VENEAVVAEILRKCEGS 257 (730)
Q Consensus 214 Q~~IL~rAl~lLKpGGrLVYSTCSl~p--~ENEaVV~~~L~~~~~~ 257 (730)
+.+++..++++|+|||+|++|+|+-.. .+...++..++.+.+..
T Consensus 310 ~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 310 YHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 678999999999999999999999765 34456777777666543
No 18
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.40 E-value=1.8e-12 Score=133.22 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=105.2
Q ss_pred ccchhhccCCC-CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEec
Q 004787 67 SMVPPLFLDVQ-PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNH 144 (730)
Q Consensus 67 Smlp~llLd~~-pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~ 144 (730)
+++...++.+. ++.+|||+|||+|..+..+++.. .+.|+|+|+++..+..+++++++++.. ++.+.+.
T Consensus 37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~----------~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~ 106 (259)
T 3lpm_A 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT----------KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY 106 (259)
T ss_dssp HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC----------CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc----------CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC
Confidence 55666677888 99999999999999999887651 249999999999999999999999876 5999999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCC-CccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD-GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd-Gtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (730)
|+..++.. .....||.|++||||... +.-..+++..+.. ...........++..+.+
T Consensus 107 D~~~~~~~-------------------~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~l~~~~~ 164 (259)
T 3lpm_A 107 DLKKITDL-------------------IPKERADIVTCNPPYFATPDTSLKNTNEHFRI---ARHEVMCTLEDTIRVAAS 164 (259)
T ss_dssp CGGGGGGT-------------------SCTTCEEEEEECCCC--------------------------HHHHHHHHHHHH
T ss_pred cHHHhhhh-------------------hccCCccEEEECCCCCCCccccCCCCchHHHh---hhccccCCHHHHHHHHHH
Confidence 98775421 113689999999999776 3223333321111 011112234578999999
Q ss_pred hccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 224 LLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 224 lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
+|||||++++.. +.+...-+..++++++
T Consensus 165 ~LkpgG~l~~~~----~~~~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 165 LLKQGGKANFVH----RPERLLDIIDIMRKYR 192 (259)
T ss_dssp HEEEEEEEEEEE----CTTTHHHHHHHHHHTT
T ss_pred HccCCcEEEEEE----cHHHHHHHHHHHHHCC
Confidence 999999999942 3455556677777765
No 19
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.37 E-value=1.6e-13 Score=150.34 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=95.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc---------------CCCceEEE
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM---------------CTANLIVT 142 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl---------------g~~nv~vt 142 (730)
++.+|||+|||+|.+++.+|..++ ...|+|+|+++.++.++++|++++ +..++.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~---------~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~ 117 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP---------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVIN 117 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS---------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEE
T ss_pred CCCEEEECCCchhHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEE
Confidence 688999999999999999998753 357999999999999999999999 87778899
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
+.|+..+... ....||+|++||||+. ..+|..|+
T Consensus 118 ~~Da~~~~~~--------------------~~~~fD~I~lDP~~~~--------------------------~~~l~~a~ 151 (378)
T 2dul_A 118 HDDANRLMAE--------------------RHRYFHFIDLDPFGSP--------------------------MEFLDTAL 151 (378)
T ss_dssp ESCHHHHHHH--------------------STTCEEEEEECCSSCC--------------------------HHHHHHHH
T ss_pred cCcHHHHHHh--------------------ccCCCCEEEeCCCCCH--------------------------HHHHHHHH
Confidence 9988764210 0247999999999763 25788899
Q ss_pred hhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
++||+|| ++|.||+-....+.......+++++
T Consensus 152 ~~lk~gG-~l~vt~td~~~l~~~~~~~~~~~yg 183 (378)
T 2dul_A 152 RSAKRRG-ILGVTATDGAPLCGAHPRACLRKYL 183 (378)
T ss_dssp HHEEEEE-EEEEEECCHHHHTTSSHHHHHHHHS
T ss_pred HhcCCCC-EEEEEeecchhhccccHHHHHHHcc
Confidence 9999999 7889997544322223445566654
No 20
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.37 E-value=5.3e-12 Score=124.36 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=108.6
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
...+++.++.+|||+|||+|..+..++... +.+.|+|+|+++.++..+++++++.+..++.+...|+....
T Consensus 33 l~~l~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 33 LSKLRLQDDLVMWDIGAGSASVSIEASNLM---------PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL 103 (204)
T ss_dssp HHHTTCCTTCEEEEETCTTCHHHHHHHHHC---------TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred HHHcCCCCCCEEEEECCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence 345678899999999999999999998873 35899999999999999999999999888999988875432
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||.|+++.+.. ....++..+.++|||||+
T Consensus 104 ~---------------------~~~~~D~i~~~~~~~-------------------------~~~~~l~~~~~~LkpgG~ 137 (204)
T 3e05_A 104 D---------------------DLPDPDRVFIGGSGG-------------------------MLEEIIDAVDRRLKSEGV 137 (204)
T ss_dssp T---------------------TSCCCSEEEESCCTT-------------------------CHHHHHHHHHHHCCTTCE
T ss_pred h---------------------cCCCCCEEEECCCCc-------------------------CHHHHHHHHHHhcCCCeE
Confidence 1 014699999976531 123688999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+++++++. ++...+...|++.+-.++++.+
T Consensus 138 l~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 167 (204)
T 3e05_A 138 IVLNAVTL---DTLTKAVEFLEDHGYMVEVACV 167 (204)
T ss_dssp EEEEECBH---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEeccc---ccHHHHHHHHHHCCCceeEEEE
Confidence 99998877 6778888889988755555543
No 21
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.36 E-value=3.2e-12 Score=133.59 Aligned_cols=129 Identities=22% Similarity=0.299 Sum_probs=105.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+++|.+|||+|||+|..+..++... ...|+|+|+++..+..+++|++.++..+ +.+.++|+..++.
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~----------~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--- 189 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG----------KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT----------CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---
Confidence 4689999999999999999998762 1279999999999999999999999876 8899999887542
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...||+|++|+|++. ..++..++++|||||+++++
T Consensus 190 -------------------~~~fD~Vi~~~p~~~--------------------------~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 190 -------------------ENIADRILMGYVVRT--------------------------HEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp -------------------CSCEEEEEECCCSSG--------------------------GGGHHHHHHHEEEEEEEEEE
T ss_pred -------------------cCCccEEEECCchhH--------------------------HHHHHHHHHHCCCCeEEEEE
Confidence 267999999999432 23567889999999999999
Q ss_pred cCCC---CCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 235 TCSM---NPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 235 TCSl---~p~ENEaVV~~~L~~~~~~velvd 262 (730)
+|+- ...+....+..++++.+..++.+.
T Consensus 225 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~ 255 (278)
T 2frn_A 225 NTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred EeeccccccccHHHHHHHHHHHcCCeeEEee
Confidence 9984 345566777888888887666644
No 22
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.35 E-value=4.9e-12 Score=133.12 Aligned_cols=130 Identities=23% Similarity=0.328 Sum_probs=102.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+++|++|||||||.|++++.+|.. +...|+|+|+|+..+..|++|++++++.+ +.+.+.|+..|+.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~----------g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--- 189 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY----------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH----------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh----------cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---
Confidence 578999999999999999998865 14689999999999999999999999865 8899999988653
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...||+|++|+|++.. ..|..|+++||+||.|.|.
T Consensus 190 -------------------~~~~D~Vi~~~p~~~~--------------------------~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 190 -------------------ENIADRILMGYVVRTH--------------------------EFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp -------------------CSCEEEEEECCCSSGG--------------------------GGHHHHHHHEEEEEEEEEE
T ss_pred -------------------ccCCCEEEECCCCcHH--------------------------HHHHHHHHHcCCCCEEEEE
Confidence 2579999999996542 1356688999999998653
Q ss_pred -cC--CCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 235 -TC--SMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 235 -TC--Sl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
.+ ...+.+-...+..+.+..+..++.+.+
T Consensus 225 ~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~ 256 (278)
T 3k6r_A 225 NTVPEKLMPREPFETFKRITKEYGYDVEKLNE 256 (278)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred eeecccccchhHHHHHHHHHHHcCCcEEEEEE
Confidence 33 233445567788888888777766654
No 23
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.34 E-value=5.1e-12 Score=125.91 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=105.3
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~f 149 (730)
...+++.++++|||+|||+|..+..++.. .+.|+|+|+++.++..+++++++++.. ++.+...|+...
T Consensus 48 l~~l~~~~~~~vLDlGcG~G~~~~~la~~-----------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 48 LAALAPRRGELLWDIGGGSGSVSVEWCLA-----------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHCCCTTCEEEEETCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHhcCCCCCCEEEEecCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 34567889999999999999999999876 368999999999999999999999988 899999987762
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
.. ....||.|+++.. + .+. ++..+.++|||||
T Consensus 117 ~~---------------------~~~~~D~v~~~~~------~--------------------~~~-~l~~~~~~LkpgG 148 (204)
T 3njr_A 117 LA---------------------DLPLPEAVFIGGG------G--------------------SQA-LYDRLWEWLAPGT 148 (204)
T ss_dssp GT---------------------TSCCCSEEEECSC------C--------------------CHH-HHHHHHHHSCTTC
T ss_pred cc---------------------cCCCCCEEEECCc------c--------------------cHH-HHHHHHHhcCCCc
Confidence 11 0146999998541 0 023 7888999999999
Q ss_pred EEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 230 rLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+||+++|+. ++...+.++|++.+..+.-+.+
T Consensus 149 ~lv~~~~~~---~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 149 RIVANAVTL---ESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp EEEEEECSH---HHHHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEEecCc---ccHHHHHHHHHhCCCcEEEEEe
Confidence 999999987 8888889999988744444433
No 24
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.33 E-value=2.9e-12 Score=137.99 Aligned_cols=133 Identities=25% Similarity=0.323 Sum_probs=107.0
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
..+++++++..|||+|||+|..+..++.+.+ +.+.|+|+|+|+..+..++.|+++.|..++.+.+.|+..++
T Consensus 196 ~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~--------~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~ 267 (354)
T 3tma_A 196 LRLADARPGMRVLDPFTGSGTIALEAASTLG--------PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP 267 (354)
T ss_dssp HHHTTCCTTCCEEESSCTTSHHHHHHHHHHC--------TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG
T ss_pred HHHhCCCCCCEEEeCCCCcCHHHHHHHHhhC--------CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc
Confidence 3456788999999999999999999988752 24789999999999999999999999888999999988764
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
.. ...||.|++||||.- .......+..++..++..+.++|||||+
T Consensus 268 ~~---------------------~~~~D~Ii~npPyg~--------------r~~~~~~~~~~~~~~~~~~~~~LkpgG~ 312 (354)
T 3tma_A 268 RF---------------------FPEVDRILANPPHGL--------------RLGRKEGLFHLYWDFLRGALALLPPGGR 312 (354)
T ss_dssp GT---------------------CCCCSEEEECCCSCC------------------CHHHHHHHHHHHHHHHHTSCTTCE
T ss_pred cc---------------------cCCCCEEEECCCCcC--------------ccCCcccHHHHHHHHHHHHHHhcCCCcE
Confidence 21 145899999999731 1122245567889999999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHH
Q 004787 231 IVYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~ 252 (730)
+++.|| |+..+..+++
T Consensus 313 l~i~t~------~~~~~~~~~~ 328 (354)
T 3tma_A 313 VALLTL------RPALLKRALP 328 (354)
T ss_dssp EEEEES------CHHHHHHHCC
T ss_pred EEEEeC------CHHHHHHHhh
Confidence 999998 4666666665
No 25
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.33 E-value=3.4e-12 Score=127.56 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHF 149 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-----~~nv~vt~~Da~~f 149 (730)
.++++++|||+|||+|.++.++++.++. .+.|+++|+++.++..+++++++.+ ..++.+...|+...
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGC--------TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCT--------TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 4789999999999999999999988642 5799999999999999999998865 46788888887642
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+. ....||+|+++.+|.. ++..+.++|||||
T Consensus 146 ~~---------------------~~~~fD~i~~~~~~~~----------------------------~~~~~~~~LkpgG 176 (226)
T 1i1n_A 146 YA---------------------EEAPYDAIHVGAAAPV----------------------------VPQALIDQLKPGG 176 (226)
T ss_dssp CG---------------------GGCCEEEEEECSBBSS----------------------------CCHHHHHTEEEEE
T ss_pred cc---------------------cCCCcCEEEECCchHH----------------------------HHHHHHHhcCCCc
Confidence 11 1257999999988611 2346678999999
Q ss_pred EEEEEcCCCCCCCcHH
Q 004787 230 RIVYSTCSMNPVENEA 245 (730)
Q Consensus 230 rLVYSTCSl~p~ENEa 245 (730)
+||+++|+..+.++..
T Consensus 177 ~lv~~~~~~~~~~~~~ 192 (226)
T 1i1n_A 177 RLILPVGPAGGNQMLE 192 (226)
T ss_dssp EEEEEESCTTSCEEEE
T ss_pred EEEEEEecCCCceEEE
Confidence 9999999987766643
No 26
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.33 E-value=1.8e-11 Score=122.51 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=105.4
Q ss_pred CCCCCCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
.++++.+|||+||| +|..+..++... .+.|+|+|+++..+..++.++++++. ++.+...|+..+..+
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~- 119 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF----------NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGV- 119 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH----------CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTT-
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc----------CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhc-
Confidence 35789999999999 999999998874 26899999999999999999999988 888888887543321
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++|+|+...+.-...... ..|.... .++ ....+++..+.++|||||++++
T Consensus 120 -------------------~~~~fD~I~~npp~~~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 120 -------------------VEGTFDVIFSAPPYYDKPLGRVLTER-EAIGGGK-YGE-EFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp -------------------CCSCEEEEEECCCCC----------------CCS-SSC-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred -------------------ccCceeEEEECCCCcCCccccccChh-hhhccCc-cch-HHHHHHHHHHHHHhCCCeEEEE
Confidence 12679999999998776642221111 1111111 112 3336799999999999999998
Q ss_pred EcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 234 STCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.+++-. +...-+.+.+++.+-.++.+.
T Consensus 178 ~~~~~~--~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 178 YLPDKE--KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp EEESCH--HHHHHHHHHHHHTTCEEEEEE
T ss_pred EecccH--hHHHHHHHHHHHcCCceEEEE
Confidence 754421 445566777888775555544
No 27
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.32 E-value=9.9e-12 Score=128.93 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=106.4
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++..+ +...|+|+|+++.++..+++|+++++..++.+...|+....
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~---------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~------ 172 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASER---------PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL------ 172 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC---------TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG------
T ss_pred cCCCEEEEecCCccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc------
Confidence 578899999999999999998764 35799999999999999999999999888888888765421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccc----cchHHHHHHHHHHHHhhccCCCEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~----~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++++||.+.+...-.++++. +.|... ......+.+++..+.++|+|||+++
T Consensus 173 ----------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~-~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~ 235 (276)
T 2b3t_A 173 ----------------AGQQFAMIVSNPPYIDEQDPHLQQGDVR-FEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 235 (276)
T ss_dssp ----------------TTCCEEEEEECCCCBCTTCHHHHSSGGG-SSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----------------ccCCccEEEECCCCCCccccccChhhhh-cCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 1257999999999998754111112221 122111 1122456789999999999999999
Q ss_pred EEcCCCCCCCcHHHHHHHHHHCC
Q 004787 233 YSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
+.++. .+..-+.++|++.|
T Consensus 236 ~~~~~----~~~~~~~~~l~~~G 254 (276)
T 2b3t_A 236 LEHGW----QQGEAVRQAFILAG 254 (276)
T ss_dssp EECCS----SCHHHHHHHHHHTT
T ss_pred EEECc----hHHHHHHHHHHHCC
Confidence 98554 34556777888765
No 28
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.32 E-value=8.1e-13 Score=145.30 Aligned_cols=125 Identities=18% Similarity=0.086 Sum_probs=96.5
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCccc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n--v~vt~~Da~~fp~~~~ 154 (730)
++|.+|||+|||+|++++.+|..+.+ .+.|+|+|+++.+++++++|++++++.+ +.+.+.|+..+...
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~g--------a~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~-- 120 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSC--------VEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK-- 120 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSC--------EEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--
Confidence 67999999999999999999886432 3799999999999999999999999876 99999998764210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.....||+|++||+|+. ..++..|+++|++|| ++|+
T Consensus 121 -----------------~~~~~fD~V~lDP~g~~--------------------------~~~l~~a~~~Lk~gG-ll~~ 156 (392)
T 3axs_A 121 -----------------EWGFGFDYVDLDPFGTP--------------------------VPFIESVALSMKRGG-ILSL 156 (392)
T ss_dssp -----------------CCSSCEEEEEECCSSCC--------------------------HHHHHHHHHHEEEEE-EEEE
T ss_pred -----------------hhCCCCcEEEECCCcCH--------------------------HHHHHHHHHHhCCCC-EEEE
Confidence 00246999999997431 247888999999988 8899
Q ss_pred cCCCCCCCcHHHHHHHHHHCC
Q 004787 235 TCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~ 255 (730)
||+-........+...+++++
T Consensus 157 t~t~~~~l~g~~~~~~~rkYg 177 (392)
T 3axs_A 157 TATDTAPLSGTYPKTCMRRYM 177 (392)
T ss_dssp EECCHHHHTTSSHHHHHHHHS
T ss_pred EecchhhhccccHHHHHHHhC
Confidence 997643222223455667776
No 29
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.30 E-value=8.9e-12 Score=129.36 Aligned_cols=144 Identities=13% Similarity=0.191 Sum_probs=100.9
Q ss_pred cEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCC
Q 004787 59 NITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTA 137 (730)
Q Consensus 59 ~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~ 137 (730)
....++....+....+++.++.+|||+|||+|..+.++++.+. +.+.|+++|+++.++..+++++++. |..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~g~~ 162 (275)
T 1yb2_A 91 TQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALN--------GKGTLTVVERDEDNLKKAMDNLSEFYDIG 162 (275)
T ss_dssp ---------------CCCCTTCEEEEECCTTSHHHHHHHHHHT--------TSSEEEEECSCHHHHHHHHHHHHTTSCCT
T ss_pred ccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 3344554445556677899999999999999999999998764 2579999999999999999999988 888
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004787 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (730)
Q Consensus 138 nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I 217 (730)
++.+...|+.... ....||+|++|+| ++ .++
T Consensus 163 ~v~~~~~d~~~~~----------------------~~~~fD~Vi~~~~---------~~------------------~~~ 193 (275)
T 1yb2_A 163 NVRTSRSDIADFI----------------------SDQMYDAVIADIP---------DP------------------WNH 193 (275)
T ss_dssp TEEEECSCTTTCC----------------------CSCCEEEEEECCS---------CG------------------GGS
T ss_pred cEEEEECchhccC----------------------cCCCccEEEEcCc---------CH------------------HHH
Confidence 8988888876511 1257999999876 11 146
Q ss_pred HHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecC
Q 004787 218 AMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s 264 (730)
|..+.++|||||+|++++|+.. ...-+...|++.+ +..+.+.
T Consensus 194 l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~~l~~~G--f~~~~~~ 235 (275)
T 1yb2_A 194 VQKIASMMKPGSVATFYLPNFD---QSEKTVLSLSASG--MHHLETV 235 (275)
T ss_dssp HHHHHHTEEEEEEEEEEESSHH---HHHHHHHHSGGGT--EEEEEEE
T ss_pred HHHHHHHcCCCCEEEEEeCCHH---HHHHHHHHHHHCC--CeEEEEE
Confidence 8888999999999999998762 3333445555543 5555543
No 30
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.29 E-value=2.5e-11 Score=117.31 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=93.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+++|++|||+|||+|..|..++.. .+.|+|+|+++..+..+++++++.+..++.+...++..++..
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-----------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~-- 85 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-----------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY-- 85 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-----------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT--
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh--
Confidence 3578999999999999999998765 379999999999999999999999988888888666553211
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|+++.+.-..+ ..........+..+|..+.++|||||+++.+
T Consensus 86 ------------------~~~~fD~v~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 86 ------------------VREPIRAAIFNLGYLPSA-------------DKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp ------------------CCSCEEEEEEEEC------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------ccCCcCEEEEeCCCCCCc-------------chhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 125799999985421111 0111223345677899999999999999988
Q ss_pred cCCCCCC---CcHHHHHHHHHHC
Q 004787 235 TCSMNPV---ENEAVVAEILRKC 254 (730)
Q Consensus 235 TCSl~p~---ENEaVV~~~L~~~ 254 (730)
.++-++. |.+. +..++...
T Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~l 156 (185)
T 3mti_A 135 IYYGHDGGDMEKDA-VLEYVIGL 156 (185)
T ss_dssp EC------CHHHHH-HHHHHHHS
T ss_pred EeCCCCCCHHHHHH-HHHHHHhC
Confidence 7775543 3333 44555544
No 31
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.27 E-value=3.3e-11 Score=117.65 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=101.7
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~ 152 (730)
+.++++.+|||+|||+|..+..++..++ +.+.|+|+|+++.++..++.++++.+. .++.+...|+..++..
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 89 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLVG--------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY 89 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHHC--------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh
Confidence 3568899999999999999999998864 257999999999999999999999987 6899999998765421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCC--CCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS--GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS--GdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
....||.|++|+|.- +++.+ ........+++..+.++|||||+
T Consensus 90 --------------------~~~~fD~v~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~Lk~gG~ 134 (197)
T 3eey_A 90 --------------------IDCPVKAVMFNLGYLPSGDHSI---------------STRPETTIQALSKAMELLVTGGI 134 (197)
T ss_dssp --------------------CCSCEEEEEEEESBCTTSCTTC---------------BCCHHHHHHHHHHHHHHEEEEEE
T ss_pred --------------------ccCCceEEEEcCCcccCccccc---------------ccCcccHHHHHHHHHHhCcCCCE
Confidence 126799999998741 11111 11122445689999999999999
Q ss_pred EEEEcCCCCCCC--cHHHHHHHHHH
Q 004787 231 IVYSTCSMNPVE--NEAVVAEILRK 253 (730)
Q Consensus 231 LVYSTCSl~p~E--NEaVV~~~L~~ 253 (730)
+++++++-.+.. ....+..+++.
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T 3eey_A 135 ITVVIYYGGDTGFEEKEKVLEFLKG 159 (197)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTT
T ss_pred EEEEEccCCCCcHHHHHHHHHHHHh
Confidence 998876543332 23344455543
No 32
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.26 E-value=1.5e-11 Score=126.25 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=87.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
|+++||++|||++||+|..|.+||++++ |+|.|+|+|+++.++..|++++++. .|+..+..|+......
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG--------~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~- 141 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIG--------PRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKY- 141 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHC--------TTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGG-
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCcccc-
Confidence 6789999999999999999999999986 4799999999999999998876554 5788787777652211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
......||.|++|.+... ....++.++.++|||||+++.
T Consensus 142 -----------------~~~~~~vDvVf~d~~~~~------------------------~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 142 -----------------RHLVEGVDGLYADVAQPE------------------------QAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp -----------------TTTCCCEEEEEECCCCTT------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------------ccccceEEEEEEeccCCh------------------------hHHHHHHHHHHhccCCCEEEE
Confidence 122367999999987321 123578899999999999998
Q ss_pred Ec
Q 004787 234 ST 235 (730)
Q Consensus 234 ST 235 (730)
+.
T Consensus 181 ~i 182 (233)
T 4df3_A 181 AI 182 (233)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 33
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.26 E-value=9.9e-12 Score=118.63 Aligned_cols=132 Identities=16% Similarity=0.248 Sum_probs=102.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeccccc-CC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH-FP 150 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~-fp 150 (730)
.+++.++.+|||+|||+|..+.+++..+ +.+.|+++|+++.++..+++++++++.. ++ +...|+.. ++
T Consensus 20 ~~~~~~~~~vldiG~G~G~~~~~l~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~ 89 (178)
T 3hm2_A 20 ALAPKPHETLWDIGGGSGSIAIEWLRST---------PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD 89 (178)
T ss_dssp HHCCCTTEEEEEESTTTTHHHHHHHTTS---------SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG
T ss_pred HhcccCCCeEEEeCCCCCHHHHHHHHHC---------CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh
Confidence 4577899999999999999999987763 3589999999999999999999998887 77 77676533 11
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
.....||.|+++.+... ..++..+.++|||||+
T Consensus 90 ---------------------~~~~~~D~i~~~~~~~~--------------------------~~~l~~~~~~L~~gG~ 122 (178)
T 3hm2_A 90 ---------------------DVPDNPDVIFIGGGLTA--------------------------PGVFAAAWKRLPVGGR 122 (178)
T ss_dssp ---------------------GCCSCCSEEEECC-TTC--------------------------TTHHHHHHHTCCTTCE
T ss_pred ---------------------ccCCCCCEEEECCcccH--------------------------HHHHHHHHHhcCCCCE
Confidence 11157999998543100 3478889999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecC
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s 264 (730)
+++++++. ++...+..++++++..+.-+.++
T Consensus 123 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 123 LVANAVTV---ESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp EEEEECSH---HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred EEEEeecc---ccHHHHHHHHHHcCCeeEEEEee
Confidence 99999887 77788888998887655554443
No 34
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.23 E-value=6.7e-11 Score=128.64 Aligned_cols=143 Identities=12% Similarity=0.125 Sum_probs=105.6
Q ss_pred CcEEEccccccchhhc-cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 58 GNITRQEAVSMVPPLF-LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 58 G~i~~Qd~~Smlp~ll-Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
+....|+.++.+.... ....+|.+|||+| |+|..+..++.. + +.+.|+++|+|+..+..++++++++|.
T Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~--------~~~~v~~vDi~~~~l~~a~~~~~~~g~ 220 (373)
T 2qm3_A 151 AYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-G--------LPKRIAVLDIDERLTKFIEKAANEIGY 220 (373)
T ss_dssp CCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-T--------CCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred eecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-C--------CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3444455554444332 2334789999999 999999888764 1 247999999999999999999999998
Q ss_pred CceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH
Q 004787 137 ANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 137 ~nv~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
.++.+...|+.. +|.. ....||.|++|+||+..| ..
T Consensus 221 ~~v~~~~~D~~~~l~~~--------------------~~~~fD~Vi~~~p~~~~~-----------------------~~ 257 (373)
T 2qm3_A 221 EDIEIFTFDLRKPLPDY--------------------ALHKFDTFITDPPETLEA-----------------------IR 257 (373)
T ss_dssp CCEEEECCCTTSCCCTT--------------------TSSCBSEEEECCCSSHHH-----------------------HH
T ss_pred CCEEEEEChhhhhchhh--------------------ccCCccEEEECCCCchHH-----------------------HH
Confidence 789999998876 3310 024799999999975310 16
Q ss_pred HHHHHHHhhccCCCE-EEEEcCCCCCCCcH---HHHHHHHH-HCC
Q 004787 216 QIAMRGISLLKVGGR-IVYSTCSMNPVENE---AVVAEILR-KCE 255 (730)
Q Consensus 216 ~IL~rAl~lLKpGGr-LVYSTCSl~p~ENE---aVV~~~L~-~~~ 255 (730)
.+|.++.++|||||+ ++|++|+ ..++. ..+..++. +.+
T Consensus 258 ~~l~~~~~~LkpgG~~~~~~~~~--~~~~~~~~~~~~~~l~~~~g 300 (373)
T 2qm3_A 258 AFVGRGIATLKGPRCAGYFGITR--RESSLDKWREIQKLLLNEFN 300 (373)
T ss_dssp HHHHHHHHTBCSTTCEEEEEECT--TTCCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcccCCeEEEEEEec--CcCCHHHHHHHHHHHHHhcC
Confidence 789999999999995 5898887 23444 56677777 665
No 35
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.23 E-value=1.4e-11 Score=123.94 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=109.3
Q ss_pred hhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH
Q 004787 42 QTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (730)
Q Consensus 42 ~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~ 121 (730)
+.+..+..|. ...|....|.....+...++.+.++.+|||+|||+|..+..+++.+ |.+.|+++|+++
T Consensus 21 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~---------~~~~v~~vD~~~ 88 (233)
T 2gpy_A 21 QYIEQMEREA---HEQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL---------PEATIVSIERDE 88 (233)
T ss_dssp HHHHHHHHHH---HHTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC---------TTCEEEEECCCH
T ss_pred HHHHHHHHHH---HHcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC---------CCCEEEEEECCH
Confidence 3455555542 2346666777777777777788899999999999999999999875 247999999999
Q ss_pred HHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh
Q 004787 122 QRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR 200 (730)
Q Consensus 122 ~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~ 200 (730)
.++..++.++++.+.. ++.+...|+..+... ......||.|++|++|+
T Consensus 89 ~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------------~~~~~~fD~I~~~~~~~------------- 137 (233)
T 2gpy_A 89 RRYEEAHKHVKALGLESRIELLFGDALQLGEK------------------LELYPLFDVLFIDAAKG------------- 137 (233)
T ss_dssp HHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH------------------HTTSCCEEEEEEEGGGS-------------
T ss_pred HHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh------------------cccCCCccEEEECCCHH-------------
Confidence 9999999999999875 588888887653110 00025799999988753
Q ss_pred hcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 201 KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 201 ~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
.+..++..+.++|+|||+||++++.+
T Consensus 138 ------------~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 138 ------------QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp ------------CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ------------HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 12467889999999999999997755
No 36
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.21 E-value=1e-11 Score=122.92 Aligned_cols=130 Identities=16% Similarity=0.138 Sum_probs=90.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+++|.+|||+|||||++|..+++. .+.|+|+|+++.. ..+++.+...|+...+....
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-----------~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~- 79 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-----------ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDD- 79 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-----------CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHH-
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-----------CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHH-
Confidence 468999999999999999998765 3799999998742 24578888888766331100
Q ss_pred CCCCCCCccccccccccc---cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 156 KNFSSASDKGIESESNMG---QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~---~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
. ..... ...||+|++|+++...|... .+ ......++..+|..|.++|||||++|
T Consensus 80 -----------~-~~~~~~~~~~~~D~Vlsd~~~~~~g~~~--~d---------~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 80 -----------I-DRALREEGIEKVDDVVSDAMAKVSGIPS--RD---------HAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp -----------H-HHHHHHHTCSSEEEEEECCCCCCCSCHH--HH---------HHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------H-HHHhhcccCCcceEEecCCCcCCCCCcc--cC---------HHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 0 00000 03799999999887777421 11 12234567889999999999999999
Q ss_pred EEcCCCCCCCcHHHHHHHHHHC
Q 004787 233 YSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~ 254 (730)
..+ ...++...+...|+..
T Consensus 137 ~k~---~~~~~~~~~~~~l~~~ 155 (191)
T 3dou_A 137 LKQ---FQGDMTNDFIAIWRKN 155 (191)
T ss_dssp EEE---ECSTHHHHHHHHHGGG
T ss_pred EEE---cCCCCHHHHHHHHHHh
Confidence 543 4446666666777653
No 37
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.20 E-value=3.5e-11 Score=120.42 Aligned_cols=152 Identities=12% Similarity=0.136 Sum_probs=107.6
Q ss_pred EEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 004787 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NL 139 (730)
Q Consensus 61 ~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv 139 (730)
..+.....+...++...++.+|||+|||+|..|..+++.+. +.+.|+++|+++..+..+++++++.+.. ++
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v 112 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQ--------PGARLLTMEINPDCAAITQQMLNFAGLQDKV 112 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGE
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCC--------CCCEEEEEeCChHHHHHHHHHHHHcCCCCce
Confidence 34555555555666677889999999999999999988653 2589999999999999999999999976 59
Q ss_pred EEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH
Q 004787 140 IVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA 218 (730)
Q Consensus 140 ~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL 218 (730)
.+..+|+..+ +.+. .......||.|++|.++.. .....+++
T Consensus 113 ~~~~~d~~~~l~~~~----------------~~~~~~~fD~V~~d~~~~~----------------------~~~~~~~~ 154 (221)
T 3u81_A 113 TILNGASQDLIPQLK----------------KKYDVDTLDMVFLDHWKDR----------------------YLPDTLLL 154 (221)
T ss_dssp EEEESCHHHHGGGTT----------------TTSCCCCCSEEEECSCGGG----------------------HHHHHHHH
T ss_pred EEEECCHHHHHHHHH----------------HhcCCCceEEEEEcCCccc----------------------chHHHHHH
Confidence 9999988653 2110 0011257999999875211 11123456
Q ss_pred HHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 219 MRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 219 ~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
..+ ++|||||+||+..|.+. +.....+.++.++ .++...+
T Consensus 155 ~~~-~~LkpgG~lv~~~~~~~---~~~~~~~~l~~~~-~~~~~~~ 194 (221)
T 3u81_A 155 EKC-GLLRKGTVLLADNVIVP---GTPDFLAYVRGSS-SFECTHY 194 (221)
T ss_dssp HHT-TCCCTTCEEEESCCCCC---CCHHHHHHHHHCT-TEEEEEE
T ss_pred Hhc-cccCCCeEEEEeCCCCc---chHHHHHHHhhCC-CceEEEc
Confidence 665 99999999999999863 3344456666654 4554443
No 38
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.19 E-value=6.7e-11 Score=126.97 Aligned_cols=167 Identities=12% Similarity=0.141 Sum_probs=115.7
Q ss_pred cCcEEEccccccchhhcc----CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH
Q 004787 57 IGNITRQEAVSMVPPLFL----DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 57 ~G~i~~Qd~~Smlp~llL----d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk 132 (730)
.|.++-.+....+...++ ++.++.+|||.|||+|+.+..+++.+.... .....|+|+|+++..+..++.++.
T Consensus 105 ~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~----~~~~~v~GiDi~~~~~~~a~~n~~ 180 (344)
T 2f8l_A 105 VNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKG----DVDVHASGVDVDDLLISLALVGAD 180 (344)
T ss_dssp GGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTS----SCEEEEEEEESCHHHHHHHHHHHH
T ss_pred cCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhc----CCCceEEEEECCHHHHHHHHHHHH
Confidence 455554444333322232 566789999999999999999998875310 012789999999999999999998
Q ss_pred HcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHH
Q 004787 133 RMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHS 212 (730)
Q Consensus 133 Rlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~ 212 (730)
..|. ++.+.+.|+.... ....||.|+++||+ |.+. ..+.+..|.+....+...
T Consensus 181 ~~g~-~~~i~~~D~l~~~----------------------~~~~fD~Ii~NPPf---g~~~-~~~~~~~~~~~~~~g~~~ 233 (344)
T 2f8l_A 181 LQRQ-KMTLLHQDGLANL----------------------LVDPVDVVISDLPV---GYYP-DDENAKTFELCREEGHSF 233 (344)
T ss_dssp HHTC-CCEEEESCTTSCC----------------------CCCCEEEEEEECCC---SEES-CHHHHTTSTTCCSSSCEE
T ss_pred hCCC-CceEEECCCCCcc----------------------ccCCccEEEECCCC---CCcC-chhhhhhccccCCCCcch
Confidence 8887 5677777764411 12579999999997 3332 344455565543344555
Q ss_pred HHHHHHHHHHhhccCCCEEEEEcC-CCCCCCcHHHHHHHHHHC
Q 004787 213 LQVQIAMRGISLLKVGGRIVYSTC-SMNPVENEAVVAEILRKC 254 (730)
Q Consensus 213 lQ~~IL~rAl~lLKpGGrLVYSTC-Sl~p~ENEaVV~~~L~~~ 254 (730)
.+..++.+++++|+|||++++.++ ++.....+.-+...|.+.
T Consensus 234 ~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 234 AHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN 276 (344)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhC
Confidence 777899999999999999998863 333334455666666554
No 39
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.18 E-value=9.6e-11 Score=117.51 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=93.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+++|++|||+|||+|..|.++++.++ .|.|+|+|+++.++..+.+.+++. .|+.+...|+......
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~---------~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~- 120 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVD---------EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY- 120 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTT---------TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcC---------CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhh-
Confidence 4578999999999999999999998753 479999999999988777776654 4677777776552100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHH-HHHHHHHhhccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQV-QIAMRGISLLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~-~IL~rAl~lLKpGGrLV 232 (730)
... ...||.|++|++ .+ .|. .++.++.++|||||+++
T Consensus 121 ----------------~~~-~~~fD~V~~~~~---------~~----------------~~~~~~l~~~~r~LkpgG~l~ 158 (210)
T 1nt2_A 121 ----------------SGI-VEKVDLIYQDIA---------QK----------------NQIEILKANAEFFLKEKGEVV 158 (210)
T ss_dssp ----------------TTT-CCCEEEEEECCC---------ST----------------THHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------ccc-ccceeEEEEecc---------Ch----------------hHHHHHHHHHHHHhCCCCEEE
Confidence 001 157999999742 01 122 34888999999999999
Q ss_pred EEc---CCCCCCCcHHHHHHH---HHHCCCcEEEEecCc
Q 004787 233 YST---CSMNPVENEAVVAEI---LRKCEGSVELVDVSN 265 (730)
Q Consensus 233 YST---CSl~p~ENEaVV~~~---L~~~~~~velvd~s~ 265 (730)
++. |.-.....+.+.... |++. ++++....
T Consensus 159 i~~~~~~~~~~~~~~~~~~~~~~~l~~~---f~~~~~~~ 194 (210)
T 1nt2_A 159 IMVKARSIDSTAEPEEVFKSVLKEMEGD---FKIVKHGS 194 (210)
T ss_dssp EEEEHHHHCTTSCHHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred EEEecCCccccCCHHHHHHHHHHHHHhh---cEEeeeec
Confidence 984 322233455554222 5543 66666543
No 40
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.18 E-value=7.7e-11 Score=119.85 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccccc
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQH 148 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~ 148 (730)
....+++.++.+|||+|||+|..+..++..++ |.+.|+++|+++.++..++.+++..+..+ +.+...|+..
T Consensus 85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVG--------PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred HHHhhCCCCCCEEEEecCCchHHHHHHHHHhC--------CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 34467889999999999999999999999875 35899999999999999999999999877 8888888764
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
.. ....||.|++|+|+. ..++.++.++|+||
T Consensus 157 ~~----------------------~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~g 187 (255)
T 3mb5_A 157 GI----------------------EEENVDHVILDLPQP---------------------------ERVVEHAAKALKPG 187 (255)
T ss_dssp CC----------------------CCCSEEEEEECSSCG---------------------------GGGHHHHHHHEEEE
T ss_pred cc----------------------CCCCcCEEEECCCCH---------------------------HHHHHHHHHHcCCC
Confidence 21 125699999998721 13578889999999
Q ss_pred CEEEEEcCCCCCCCcHHHHHHHHHHCC
Q 004787 229 GRIVYSTCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 229 GrLVYSTCSl~p~ENEaVV~~~L~~~~ 255 (730)
|+++..+-+. +...-+...|++++
T Consensus 188 G~l~~~~~~~---~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 188 GFFVAYTPCS---NQVMRLHEKLREFK 211 (255)
T ss_dssp EEEEEEESSH---HHHHHHHHHHHHTG
T ss_pred CEEEEEECCH---HHHHHHHHHHHHcC
Confidence 9998654333 34455667777765
No 41
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.17 E-value=3.7e-10 Score=114.44 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=91.4
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~nv~vt~~Da~~f 149 (730)
...+++.++.+|||+|||+|..+..++..++ |.+.|+++|+++.++..+++++++. |..++.+...|+..+
T Consensus 89 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 89 VTLLDLAPGMRVLEAGTGSGGLTLFLARAVG--------EKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA 160 (258)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred HHHcCCCCCCEEEEECCCcCHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 3456789999999999999999999998864 2579999999999999999999888 877888888887664
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+. ....||.|++|+|. . ..+|.++.++|+|||
T Consensus 161 ~~---------------------~~~~~D~v~~~~~~-----------~----------------~~~l~~~~~~L~~gG 192 (258)
T 2pwy_A 161 EL---------------------EEAAYDGVALDLME-----------P----------------WKVLEKAALALKPDR 192 (258)
T ss_dssp CC---------------------CTTCEEEEEEESSC-----------G----------------GGGHHHHHHHEEEEE
T ss_pred CC---------------------CCCCcCEEEECCcC-----------H----------------HHHHHHHHHhCCCCC
Confidence 21 12579999998762 1 136788899999999
Q ss_pred EEEEEcCCC
Q 004787 230 RIVYSTCSM 238 (730)
Q Consensus 230 rLVYSTCSl 238 (730)
+++.++.+.
T Consensus 193 ~l~~~~~~~ 201 (258)
T 2pwy_A 193 FLVAYLPNI 201 (258)
T ss_dssp EEEEEESCH
T ss_pred EEEEEeCCH
Confidence 999887654
No 42
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=5.5e-11 Score=121.79 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=96.9
Q ss_pred ccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Q 004787 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIV 141 (730)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~v 141 (730)
+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|+++.++..++.++++.+.. ++.+
T Consensus 48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~ 119 (248)
T 3tfw_A 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPA--------DGQLLTLEADAHHAQVARENLQLAGVDQRVTL 119 (248)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 3444445555556778999999999999999999887531 589999999999999999999999986 7999
Q ss_pred EecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 142 TNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 142 t~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
..+|+..+ +.+ .....||.|++|+++.. ....+..
T Consensus 120 ~~~d~~~~l~~~-------------------~~~~~fD~V~~d~~~~~-------------------------~~~~l~~ 155 (248)
T 3tfw_A 120 REGPALQSLESL-------------------GECPAFDLIFIDADKPN-------------------------NPHYLRW 155 (248)
T ss_dssp EESCHHHHHHTC-------------------CSCCCCSEEEECSCGGG-------------------------HHHHHHH
T ss_pred EEcCHHHHHHhc-------------------CCCCCeEEEEECCchHH-------------------------HHHHHHH
Confidence 99988663 211 11247999999875211 1346888
Q ss_pred HHhhccCCCEEEEEcCCCC
Q 004787 221 GISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 221 Al~lLKpGGrLVYSTCSl~ 239 (730)
+.++|||||+||+..+.+.
T Consensus 156 ~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 156 ALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp HHHTCCTTCEEEEECCSGG
T ss_pred HHHhcCCCeEEEEeCCCcC
Confidence 8999999999999888764
No 43
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.16 E-value=1.8e-10 Score=119.36 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=101.4
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~f 149 (730)
...+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.++..+++++++.+. .++.+...|+..+
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVG--------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTT--------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 3456889999999999999999999998764 358999999999999999999999887 6788888877653
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+ ....||.|++|+|+. ..+|..+.++|+|||
T Consensus 177 --~--------------------~~~~~D~V~~~~~~~---------------------------~~~l~~~~~~L~pgG 207 (277)
T 1o54_A 177 --F--------------------DEKDVDALFLDVPDP---------------------------WNYIDKCWEALKGGG 207 (277)
T ss_dssp --C--------------------SCCSEEEEEECCSCG---------------------------GGTHHHHHHHEEEEE
T ss_pred --c--------------------cCCccCEEEECCcCH---------------------------HHHHHHHHHHcCCCC
Confidence 1 114699999998731 135778889999999
Q ss_pred EEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEecC
Q 004787 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 264 (730)
Q Consensus 230 rLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~s 264 (730)
+|++.+++. +.-.-+...|++.+ +..+.+.
T Consensus 208 ~l~~~~~~~---~~~~~~~~~l~~~g--f~~~~~~ 237 (277)
T 1o54_A 208 RFATVCPTT---NQVQETLKKLQELP--FIRIEVW 237 (277)
T ss_dssp EEEEEESSH---HHHHHHHHHHHHSS--EEEEEEE
T ss_pred EEEEEeCCH---HHHHHHHHHHHHCC--CceeEEE
Confidence 999988765 23334455566643 5555543
No 44
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.16 E-value=3.1e-11 Score=118.05 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=78.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++... +.+.|+|+|+++..+..++.++...+. ++.+...|+.....
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~----- 93 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC---------PGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLI----- 93 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC---------TTEEEEEEECC--------------------CCHHHHHHHHH-----
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhh-----
Confidence 678999999999999999998873 357999999999999999999888776 67777776654100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccccc----ccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~----~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
........||.|++|+|+...+.+...+.....+.+.. ...-.....+++..+.++|||||+++
T Consensus 94 ------------~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 161 (215)
T 4dzr_A 94 ------------ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGV 161 (215)
T ss_dssp ------------HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEE
T ss_pred ------------hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEE
Confidence 00001268999999999988776544332222111111 11112334678999999999999955
Q ss_pred EEcCCCCCCCcHHHHHHHHH
Q 004787 233 YSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~ 252 (730)
+.++.. ....-+..+++
T Consensus 162 ~~~~~~---~~~~~~~~~l~ 178 (215)
T 4dzr_A 162 FLEVGH---NQADEVARLFA 178 (215)
T ss_dssp EEECTT---SCHHHHHHHTG
T ss_pred EEEECC---ccHHHHHHHHH
Confidence 555553 45556677776
No 45
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=8.5e-11 Score=122.47 Aligned_cols=108 Identities=20% Similarity=0.165 Sum_probs=88.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
..+.++++|||+|||+|..+..+|.... .+.|+|+|+++..+..+++|+++++..++.+.+.|+..++.
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~---------~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-- 183 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK---------PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-- 183 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC---------CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC--
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc--
Confidence 3467899999999999999999988732 46999999999999999999999999899999999877521
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||+|++|+|. +. .+++..++++|+|||++++
T Consensus 184 --------------------~~~~D~Vi~d~p~---~~-----------------------~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 184 --------------------KDVADRVIMGYVH---KT-----------------------HKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp --------------------TTCEEEEEECCCS---SG-----------------------GGGHHHHHHHEEEEEEEEE
T ss_pred --------------------cCCceEEEECCcc---cH-----------------------HHHHHHHHHHcCCCCEEEE
Confidence 2579999999984 10 2357788899999998775
Q ss_pred EcCCCC
Q 004787 234 STCSMN 239 (730)
Q Consensus 234 STCSl~ 239 (730)
| |...
T Consensus 218 s-~~~~ 222 (272)
T 3a27_A 218 H-ETVA 222 (272)
T ss_dssp E-EEEE
T ss_pred E-EcCc
Confidence 4 5544
No 46
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.14 E-value=1.1e-10 Score=122.75 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=97.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||+|||+|..+..++.. . ...|+|+|+|+..+..+++|+++++..+ +.+...|+....
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~---------~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----- 186 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-S---------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----- 186 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-S---------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-----
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-C---------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-----
Confidence 46789999999999999999876 3 4799999999999999999999999875 888888875511
Q ss_pred CCCCCCCccccccccccccccc---cEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH-hhccCCCEE
Q 004787 156 KNFSSASDKGIESESNMGQLLF---DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI-SLLKVGGRI 231 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~F---DrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl-~lLKpGGrL 231 (730)
...| |.|++||||.+.+. ...+++. |.+.....-..-...++++.+ +.|+|||+|
T Consensus 187 ------------------~~~f~~~D~IvsnPPyi~~~~-~l~~~v~--~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l 245 (284)
T 1nv8_A 187 ------------------KEKFASIEMILSNPPYVKSSA-HLPKDVL--FEPPEALFGGEDGLDFYREFFGRYDTSGKIV 245 (284)
T ss_dssp ------------------GGGTTTCCEEEECCCCBCGGG-SCTTSCC--CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ------------------ccccCCCCEEEEcCCCCCccc-ccChhhc--cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEE
Confidence 1357 99999999998875 3333332 222211100001125788888 999999999
Q ss_pred EEEcCCCCCCCcHHHHHHHHH
Q 004787 232 VYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~ 252 (730)
++. +...+.++|. ++++
T Consensus 246 ~~e---~~~~q~~~v~-~~~~ 262 (284)
T 1nv8_A 246 LME---IGEDQVEELK-KIVS 262 (284)
T ss_dssp EEE---CCTTCHHHHT-TTST
T ss_pred EEE---ECchHHHHHH-HHHH
Confidence 963 4455666554 4443
No 47
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.14 E-value=1.1e-10 Score=116.30 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=96.6
Q ss_pred EccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eE
Q 004787 62 RQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LI 140 (730)
Q Consensus 62 ~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~ 140 (730)
.+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|+++.++..+++++++.+..+ +.
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 113 (223)
T 3duw_A 42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSS--------GGRVVTLEASEKHADIARSNIERANLNDRVE 113 (223)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCS--------SCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEE
Confidence 34444555555566778999999999999999999887531 5899999999999999999999999865 88
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
+..+|+..+... + .......||.|++|++++ ....++..
T Consensus 114 ~~~~d~~~~~~~-~---------------~~~~~~~fD~v~~d~~~~-------------------------~~~~~l~~ 152 (223)
T 3duw_A 114 VRTGLALDSLQQ-I---------------ENEKYEPFDFIFIDADKQ-------------------------NNPAYFEW 152 (223)
T ss_dssp EEESCHHHHHHH-H---------------HHTTCCCCSEEEECSCGG-------------------------GHHHHHHH
T ss_pred EEEcCHHHHHHH-H---------------HhcCCCCcCEEEEcCCcH-------------------------HHHHHHHH
Confidence 998887653110 0 000014699999998732 11357888
Q ss_pred HHhhccCCCEEEEEcCCCC
Q 004787 221 GISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 221 Al~lLKpGGrLVYSTCSl~ 239 (730)
+.++|+|||+||+..+.+.
T Consensus 153 ~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 153 ALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp HHHTCCTTCEEEEESCSGG
T ss_pred HHHhcCCCcEEEEeCCCcC
Confidence 9999999999998766553
No 48
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.13 E-value=2.7e-10 Score=110.90 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=88.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. +.+.|+|+|+|+..+..+++++++++..++.+.+.|+..++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----- 107 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR----------GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA----- 107 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT----------TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHH-----
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC----------CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHh-----
Confidence 47889999999999999887653 246899999999999999999999998889999999876431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh--hccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS--LLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~--lLKpGGrLVYS 234 (730)
......||.|++|+|.... .....+++....+ +|+|||+++..
T Consensus 108 --------------~~~~~~fD~i~~~~p~~~~---------------------~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 108 --------------AGTTSPVDLVLADPPYNVD---------------------SADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp --------------HCCSSCCSEEEECCCTTSC---------------------HHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred --------------hccCCCccEEEECCCCCcc---------------------hhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 0112679999999984321 1223456777777 99999999998
Q ss_pred cCCC
Q 004787 235 TCSM 238 (730)
Q Consensus 235 TCSl 238 (730)
+.+-
T Consensus 153 ~~~~ 156 (189)
T 3p9n_A 153 RATT 156 (189)
T ss_dssp EETT
T ss_pred ecCC
Confidence 7664
No 49
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.12 E-value=1.8e-10 Score=123.64 Aligned_cols=112 Identities=18% Similarity=0.269 Sum_probs=91.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
.+|.+|||+|||+|+.+.. +. + .+.|+|+|+++..+..+++|++.++. .++.+.+.|+..+.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~---------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----- 256 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--N---------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----- 256 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--T---------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----
T ss_pred CCCCEEEEccCccCHHHHh-cc--C---------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----
Confidence 5899999999999999988 65 2 47899999999999999999999997 57999999887642
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
..||+|++|+|..+. .++..++++|++||+|+|++
T Consensus 257 -------------------~~fD~Vi~dpP~~~~--------------------------~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 257 -------------------VKGNRVIMNLPKFAH--------------------------KFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp -------------------CCEEEEEECCTTTGG--------------------------GGHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCcEEEECCcHhHH--------------------------HHHHHHHHHcCCCCEEEEEE
Confidence 469999999995431 46788899999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHC
Q 004787 236 CSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~ 254 (730)
|+-. .+... +.|++.
T Consensus 292 ~~~~---~~~~~-~~l~~~ 306 (336)
T 2yx1_A 292 IGKD---FDKAI-KLFEKK 306 (336)
T ss_dssp EESS---SHHHH-HHHHHH
T ss_pred eecC---chHHH-HHHHHh
Confidence 9987 34443 344443
No 50
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.12 E-value=9.6e-11 Score=118.15 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=77.1
Q ss_pred cccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEec
Q 004787 66 VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNH 144 (730)
Q Consensus 66 ~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~ 144 (730)
+..+...+....++.+|||+|||+|..+..++.. .+.|+|+|+++.++..+++++++++. .++.+...
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT-----------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG 134 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC
Confidence 3444444555568999999999999999999874 37899999999999999999999998 58999999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
|+..++ ....||.|++|+||.+.+..
T Consensus 135 d~~~~~----------------------~~~~~D~v~~~~~~~~~~~~ 160 (241)
T 3gdh_A 135 DFLLLA----------------------SFLKADVVFLSPPWGGPDYA 160 (241)
T ss_dssp CHHHHG----------------------GGCCCSEEEECCCCSSGGGG
T ss_pred ChHHhc----------------------ccCCCCEEEECCCcCCcchh
Confidence 887643 12579999999999886653
No 51
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.11 E-value=3.9e-10 Score=110.90 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=95.7
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+.++.+|||+|||+|..+..++.. + .+.|+|+|+++..+..+++++++.+. ++.+...|+..++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~-~---------~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---- 110 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL-G---------AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---- 110 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT-T---------CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC----
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc-C---------CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC----
Confidence 4567899999999999999988764 1 35899999999999999999988877 7888888876642
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
..||.|++|+|+.... + .....+|.++.+++ || +|+
T Consensus 111 --------------------~~~D~v~~~~p~~~~~---~-----------------~~~~~~l~~~~~~l--~~--~~~ 146 (207)
T 1wy7_A 111 --------------------SRVDIVIMNPPFGSQR---K-----------------HADRPFLLKAFEIS--DV--VYS 146 (207)
T ss_dssp --------------------CCCSEEEECCCCSSSS---T-----------------TTTHHHHHHHHHHC--SE--EEE
T ss_pred --------------------CCCCEEEEcCCCcccc---C-----------------CchHHHHHHHHHhc--Cc--EEE
Confidence 3699999999964321 0 11235677888887 43 777
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 235 TCSMNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~~velv 261 (730)
+| +.+.++.+.+..+|.+.|..++.+
T Consensus 147 ~~-~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 147 IH-LAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp EE-ECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EE-eCCcCCHHHHHHHHHHCCCeEEEE
Confidence 78 334577788888888876444443
No 52
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.09 E-value=1.9e-10 Score=113.99 Aligned_cols=110 Identities=23% Similarity=0.108 Sum_probs=84.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEecccccCCCcccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~--~nv~vt~~Da~~fp~~~~~ 155 (730)
++.+|||+|||+|..+..++.. ..+.|+|+|+|+..+..++.+++..+. .++.+...|+..++..
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 119 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR----------QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ--- 119 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----------TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS---
T ss_pred CCCeEEEcCCccCHHHHHHHHc----------cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh---
Confidence 6789999999999999887653 136899999999999999999999998 6899999988764210
Q ss_pred CCCCCCCcccccccccccccc-ccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH--HhhccCCCEEE
Q 004787 156 KNFSSASDKGIESESNMGQLL-FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG--ISLLKVGGRIV 232 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~-FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA--l~lLKpGGrLV 232 (730)
..... ||.|++|+|+. .+. ...++... .++|+|||+|+
T Consensus 120 ----------------~~~~~~fD~I~~~~~~~-~~~----------------------~~~~l~~~~~~~~LkpgG~l~ 160 (201)
T 2ift_A 120 ----------------PQNQPHFDVVFLDPPFH-FNL----------------------AEQAISLLCENNWLKPNALIY 160 (201)
T ss_dssp ----------------CCSSCCEEEEEECCCSS-SCH----------------------HHHHHHHHHHTTCEEEEEEEE
T ss_pred ----------------hccCCCCCEEEECCCCC-Ccc----------------------HHHHHHHHHhcCccCCCcEEE
Confidence 01257 99999999942 111 12334444 56899999999
Q ss_pred EEcCCCC
Q 004787 233 YSTCSMN 239 (730)
Q Consensus 233 YSTCSl~ 239 (730)
+++|+..
T Consensus 161 i~~~~~~ 167 (201)
T 2ift_A 161 VETEKDK 167 (201)
T ss_dssp EEEESSS
T ss_pred EEECCCC
Confidence 9999874
No 53
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.09 E-value=2.9e-10 Score=117.44 Aligned_cols=142 Identities=13% Similarity=0.166 Sum_probs=93.9
Q ss_pred ccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH---cCCC-ceEEE
Q 004787 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR---MCTA-NLIVT 142 (730)
Q Consensus 67 Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR---lg~~-nv~vt 142 (730)
+++...++.+.++.+|||+|||+|..+..++... +...|+|+|+++..+.+++++++. .+.. ++.+.
T Consensus 25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~---------~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~ 95 (260)
T 2ozv_A 25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARL---------EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95 (260)
T ss_dssp HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHC---------TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEE
T ss_pred HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEE
Confidence 4455556677889999999999999999998873 357999999999999999999988 7765 58899
Q ss_pred ecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 143 NHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 143 ~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
+.|+..+..-.. ........||.|++|||+...+ -.++++..+.... .........++..+.
T Consensus 96 ~~D~~~~~~~~~--------------~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~---~~~~~~~~~~l~~~~ 157 (260)
T 2ozv_A 96 EADVTLRAKARV--------------EAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEAH---AMTEGLFEDWIRTAS 157 (260)
T ss_dssp ECCTTCCHHHHH--------------HTTCCTTCEEEEEECCCC-------------------------CCHHHHHHHHH
T ss_pred eCCHHHHhhhhh--------------hhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHHh---hcCcCCHHHHHHHHH
Confidence 998876521000 0001236799999999988764 2334443221000 000112467899999
Q ss_pred hhccCCCEEEEEc
Q 004787 223 SLLKVGGRIVYST 235 (730)
Q Consensus 223 ~lLKpGGrLVYST 235 (730)
++|||||+++...
T Consensus 158 ~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 158 AIMVSGGQLSLIS 170 (260)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HHcCCCCEEEEEE
Confidence 9999999998853
No 54
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=99.09 E-value=1.1e-10 Score=126.93 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=82.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC-C
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK-N 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~-~ 157 (730)
+.+|||+|||+|..|+.+|.. .+.|+|+|+++..+..+++|++.++..++.+...|+..+....... .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-----------~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~ 282 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-----------FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 282 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-----------SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCC
T ss_pred CCEEEEccCCCCHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccc
Confidence 678999999999999988752 3689999999999999999999999989999999887642100000 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
... ..........||.|++|||+.|.. ..++++|++||+|||.+|+
T Consensus 283 ~~~------l~~~~~~~~~fD~Vv~dPPr~g~~----------------------------~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 283 FNR------LQGIDLKSYQCETIFVDPPRSGLD----------------------------SETEKMVQAYPRILYISCN 328 (369)
T ss_dssp CTT------GGGSCGGGCCEEEEEECCCTTCCC----------------------------HHHHHHHTTSSEEEEEESC
T ss_pred ccc------ccccccccCCCCEEEECcCccccH----------------------------HHHHHHHhCCCEEEEEECC
Confidence 000 000000113799999999976421 2345667799999999996
Q ss_pred C
Q 004787 238 M 238 (730)
Q Consensus 238 l 238 (730)
-
T Consensus 329 p 329 (369)
T 3bt7_A 329 P 329 (369)
T ss_dssp H
T ss_pred H
Confidence 3
No 55
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.08 E-value=6.5e-10 Score=109.28 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=98.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..++.. +.+.|+|+|+++..+..++.++...+..++.+...|+..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 122 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL----------GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----- 122 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----
Confidence 467899999999999999887753 24699999999999999999999999887888888875532
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...||.|+++.+. ....+++..+.++|+|||++++++
T Consensus 123 ------------------~~~fD~i~~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 123 ------------------DGKFDLIVANILA-------------------------EILLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp ------------------CSCEEEEEEESCH-------------------------HHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred ------------------CCCceEEEECCcH-------------------------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1579999997651 112567888999999999999976
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
... +....+...+++.| ++++.+
T Consensus 160 ~~~---~~~~~~~~~~~~~G--f~~~~~ 182 (205)
T 3grz_A 160 IDY---LQLPKIEQALAENS--FQIDLK 182 (205)
T ss_dssp EEG---GGHHHHHHHHHHTT--EEEEEE
T ss_pred cCc---ccHHHHHHHHHHcC--CceEEe
Confidence 554 35666777888775 555553
No 56
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.07 E-value=3.2e-10 Score=116.85 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=97.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+.++.+|||+|||+|..+..++... |.+.|+|+|++.+++..+++++++++..|+.+.+.|+..++..
T Consensus 77 ~~~~~~~vLDiG~G~G~~~i~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~-- 145 (249)
T 3g89_A 77 LWQGPLRVLDLGTGAGFPGLPLKIVR---------PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE-- 145 (249)
T ss_dssp CCCSSCEEEEETCTTTTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS--
T ss_pred ccCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc--
Confidence 34678999999999999999998763 3589999999999999999999999998999999998775421
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
......||.|++..- ..+ ..++..+.++|||||++++.
T Consensus 146 ----------------~~~~~~fD~I~s~a~----------------------~~~----~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 146 ----------------AGHREAYARAVARAV----------------------APL----CVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp ----------------TTTTTCEEEEEEESS----------------------CCH----HHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------cccCCCceEEEECCc----------------------CCH----HHHHHHHHHHcCCCeEEEEE
Confidence 001257999998421 011 35788899999999999988
Q ss_pred cCCCCCCCcHHHHHHHHHHCCC
Q 004787 235 TCSMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~ 256 (730)
.+.....| -.-+..+++..|.
T Consensus 184 ~g~~~~~e-~~~~~~~l~~~G~ 204 (249)
T 3g89_A 184 KGPRVEEE-LAPLPPALERLGG 204 (249)
T ss_dssp ECSCCHHH-HTTHHHHHHHHTE
T ss_pred eCCCcHHH-HHHHHHHHHHcCC
Confidence 77643322 2334566676664
No 57
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.07 E-value=1.3e-09 Score=107.79 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=105.7
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++.+|||+|||+|..+..++...+ +.+.|+++|+++..+..+++++...+.+++.+...|+..++.
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~- 102 (219)
T 3dh0_A 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVG--------EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL- 102 (219)
T ss_dssp HHTCCTTCEEEESSCTTCTTHHHHHHHHT--------TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS-
T ss_pred HhCCCCCCEEEEEecCCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC-
Confidence 34678899999999999999999998753 257999999999999999999999998889999998876541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++... +..-+ -...+|..+.++|||||+++
T Consensus 103 --------------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~LkpgG~l~ 140 (219)
T 3dh0_A 103 --------------------PDNTVDFIFMAFT------FHELS----------------EPLKFLEELKRVAKPFAYLA 140 (219)
T ss_dssp --------------------CSSCEEEEEEESC------GGGCS----------------SHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCeeEEEeehh------hhhcC----------------CHHHHHHHHHHHhCCCeEEE
Confidence 1267999998421 11111 12568999999999999999
Q ss_pred EEcCCCCCC---------CcHHHHHHHHHHCCCcEEEEec
Q 004787 233 YSTCSMNPV---------ENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 233 YSTCSl~p~---------ENEaVV~~~L~~~~~~velvd~ 263 (730)
.+++..... -+..-+..+|++.| ++++.+
T Consensus 141 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~ 178 (219)
T 3dh0_A 141 IIDWKKEERDKGPPPEEVYSEWEVGLILEDAG--IRVGRV 178 (219)
T ss_dssp EEEECSSCCSSSCCGGGSCCHHHHHHHHHHTT--CEEEEE
T ss_pred EEEecccccccCCchhcccCHHHHHHHHHHCC--CEEEEE
Confidence 987665432 23577788888876 555543
No 58
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.07 E-value=1.9e-10 Score=116.36 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=88.9
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEecccccCCCc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGC 152 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~fp~~ 152 (730)
.++++.+|||+|||+|..|..+++.+. +.+.|+++|+++.++..+++++++.|.. ++.+..+|+..+..
T Consensus 53 ~~~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~- 123 (221)
T 3dr5_A 53 NGNGSTGAIAITPAAGLVGLYILNGLA--------DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS- 123 (221)
T ss_dssp CCTTCCEEEEESTTHHHHHHHHHHHSC--------TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG-
T ss_pred CCCCCCCEEEEcCCchHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH-
Confidence 334556999999999999999999864 2589999999999999999999999876 79999998876421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
......||.|++|++.. .....+..++++|||||+||
T Consensus 124 ------------------~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~LkpGG~lv 160 (221)
T 3dr5_A 124 ------------------RLANDSYQLVFGQVSPM-------------------------DLKALVDAAWPLLRRGGALV 160 (221)
T ss_dssp ------------------GSCTTCEEEEEECCCTT-------------------------THHHHHHHHHHHEEEEEEEE
T ss_pred ------------------HhcCCCcCeEEEcCcHH-------------------------HHHHHHHHHHHHcCCCcEEE
Confidence 01126799999987411 01346888899999999999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
+..+.+
T Consensus 161 ~dn~~~ 166 (221)
T 3dr5_A 161 LADALL 166 (221)
T ss_dssp ETTTTG
T ss_pred EeCCCC
Confidence 987765
No 59
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.06 E-value=7.9e-10 Score=111.76 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=96.8
Q ss_pred EccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE
Q 004787 62 RQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV 141 (730)
Q Consensus 62 ~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~v 141 (730)
.|.++++..+..+++.++.+|||+|||+|..+..+++. .+.|+++|+++..+..++++++..+.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 73 (239)
T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-----------VQECIGVDATKEMVEVASSFAQEKGVENVRF 73 (239)
T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHHHHHHTCCSEEE
T ss_pred ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHHHcCCCCeEE
Confidence 36677777888899999999999999999999888654 2589999999999999999999888888999
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004787 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (730)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (730)
...|+..+|. ....||.|++.-. +. .|. -...+|.++
T Consensus 74 ~~~d~~~~~~---------------------~~~~fD~v~~~~~------l~-------~~~---------~~~~~l~~~ 110 (239)
T 1xxl_A 74 QQGTAESLPF---------------------PDDSFDIITCRYA------AH-------HFS---------DVRKAVREV 110 (239)
T ss_dssp EECBTTBCCS---------------------CTTCEEEEEEESC------GG-------GCS---------CHHHHHHHH
T ss_pred EecccccCCC---------------------CCCcEEEEEECCc------hh-------hcc---------CHHHHHHHH
Confidence 9888876541 1267999998421 11 111 024678999
Q ss_pred HhhccCCCEEEEEcCCC
Q 004787 222 ISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 222 l~lLKpGGrLVYSTCSl 238 (730)
.++|||||+++.++...
T Consensus 111 ~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 111 ARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp HHHEEEEEEEEEEEECB
T ss_pred HHHcCCCcEEEEEEcCC
Confidence 99999999999876543
No 60
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.06 E-value=5.9e-10 Score=118.26 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=86.2
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
++++++|++|||+|||||+.|+.++... +.+.|+|+|+|+.++..+++++++.|..++.+..+|+..+|
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~---------~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-- 185 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHV---------YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-- 185 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHT---------TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHc---------cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--
Confidence 5788999999999999999887665443 25799999999999999999999998888999999987643
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||+|+++.- . + -..+++..+.++|||||+||
T Consensus 186 ---------------------d~~FDvV~~~a~------~---~----------------d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 186 ---------------------GLEFDVLMVAAL------A---E----------------PKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp ---------------------GCCCSEEEECTT------C---S----------------CHHHHHHHHHHHCCTTCEEE
T ss_pred ---------------------CCCcCEEEECCC------c---c----------------CHHHHHHHHHHHcCCCcEEE
Confidence 267999998432 0 1 12468889999999999999
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
..
T Consensus 220 v~ 221 (298)
T 3fpf_A 220 YR 221 (298)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 61
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.06 E-value=4.5e-10 Score=107.58 Aligned_cols=130 Identities=18% Similarity=0.141 Sum_probs=100.3
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc-CC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH-FP 150 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~-fp 150 (730)
.+++.++.+|||+|||+|..+..++.. .+.|+++|+++.++..++++++..+. .++.+...|+.. ++
T Consensus 28 ~~~~~~~~~vldiG~G~G~~~~~l~~~-----------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 96 (192)
T 1l3i_A 28 LAEPGKNDVAVDVGCGTGGVTLELAGR-----------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC 96 (192)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHTT-----------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHh-----------cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc
Confidence 456788999999999999999888764 26899999999999999999999887 678888877654 11
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ...||.|+++.+.. . ...++..+.++|+|||+
T Consensus 97 ~----------------------~~~~D~v~~~~~~~---------------------~----~~~~l~~~~~~l~~gG~ 129 (192)
T 1l3i_A 97 K----------------------IPDIDIAVVGGSGG---------------------E----LQEILRIIKDKLKPGGR 129 (192)
T ss_dssp T----------------------SCCEEEEEESCCTT---------------------C----HHHHHHHHHHTEEEEEE
T ss_pred c----------------------CCCCCEEEECCchH---------------------H----HHHHHHHHHHhcCCCcE
Confidence 0 14799999875420 0 14678899999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+++++|+. ++..-+..+|++.+-.++.+++
T Consensus 130 l~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 159 (192)
T 1l3i_A 130 IIVTAILL---ETKFEAMECLRDLGFDVNITEL 159 (192)
T ss_dssp EEEEECBH---HHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEecCc---chHHHHHHHHHHCCCceEEEEE
Confidence 99998875 4555667778877655555543
No 62
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.06 E-value=4.1e-10 Score=114.66 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=104.4
Q ss_pred hhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 41 NQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 41 ~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
.+.+..+.++-. +...+.+..+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|++
T Consensus 34 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~--------~~~v~~iD~~ 104 (237)
T 3c3y_A 34 AGFLKELREANE-SHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPD--------DGKITAIDFD 104 (237)
T ss_dssp CHHHHHHHHHHT-TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCT--------TCEEEEEESC
T ss_pred CHHHHHHHHHHH-hcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCC--------CCEEEEEECC
Confidence 344555555421 1112233334444444444555667889999999999999999998642 5899999999
Q ss_pred HHHHHHHHHHHHHcCCC-ceEEEecccccCC-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004787 121 VQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (730)
Q Consensus 121 ~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~ 198 (730)
+.++..+++++++.|.. ++.+..+|+..+. .+. ........||.|++|+++.
T Consensus 105 ~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~---------------~~~~~~~~fD~I~~d~~~~----------- 158 (237)
T 3c3y_A 105 REAYEIGLPFIRKAGVEHKINFIESDAMLALDNLL---------------QGQESEGSYDFGFVDADKP----------- 158 (237)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH---------------HSTTCTTCEEEEEECSCGG-----------
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH---------------hccCCCCCcCEEEECCchH-----------
Confidence 99999999999999885 5888888876531 110 0000125799999987531
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004787 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 199 ~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~ 239 (730)
.+..++..+.++|+|||+||+.+|-+.
T Consensus 159 --------------~~~~~l~~~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 159 --------------NYIKYHERLMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp --------------GHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred --------------HHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence 124578889999999999999988654
No 63
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.05 E-value=1.2e-09 Score=104.76 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=99.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFP 150 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n--v~vt~~Da~~fp 150 (730)
.+.+.++.+|||+|||+|..+..++.. .+.|+++|+++..+..+++++...+..+ +.+...|+..+.
T Consensus 47 ~~~~~~~~~vLdiG~G~G~~~~~~~~~-----------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 47 NVVVDKDDDILDLGCGYGVIGIALADE-----------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp HCCCCTTCEEEEETCTTSHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred HcccCCCCeEEEeCCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 345678999999999999999888765 2689999999999999999999988887 888888876521
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
....||.|++++|... .......++..+.++|+|||+
T Consensus 116 ----------------------~~~~~D~v~~~~~~~~---------------------~~~~~~~~l~~~~~~L~~gG~ 152 (194)
T 1dus_A 116 ----------------------KDRKYNKIITNPPIRA---------------------GKEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp ----------------------TTSCEEEEEECCCSTT---------------------CHHHHHHHHHHHHHHEEEEEE
T ss_pred ----------------------ccCCceEEEECCCccc---------------------chhHHHHHHHHHHHHcCCCCE
Confidence 1257999999887321 012345688999999999999
Q ss_pred EEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 231 IVYSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 231 LVYSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
++.++++. ++..-+...|++.-..++++.
T Consensus 153 l~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 181 (194)
T 1dus_A 153 IWVVIQTK---QGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp EEEEEEST---HHHHHHHHHHHHHHSCCEEEE
T ss_pred EEEEECCC---CChHHHHHHHHHHhcceEEEe
Confidence 99988775 333334555555433455443
No 64
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.05 E-value=1.3e-09 Score=108.27 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=98.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++... |.+.|+|+|+++..+..++.++++.+..++.+...|+..++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---- 106 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN---------PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY---- 106 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC---------CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----
Confidence 468899999999999999998873 3579999999999999999999999988999999998775421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.....||.|+++.|.. |.+-. ..... ..+..+|..+.++|+|||+|+.+|-
T Consensus 107 ---------------~~~~~~D~i~~~~~~~-----------~~~~~-~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 107 ---------------FEDGEIDRLYLNFSDP-----------WPKKR-HEKRR--LTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp ---------------SCTTCCSEEEEESCCC-----------CCSGG-GGGGS--TTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred ---------------cCCCCCCEEEEECCCC-----------ccccc-hhhhc--cCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 1125799999987621 11100 00000 1256789999999999999998763
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 237 SMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
.. .--.-+.+.+++++ ++++.+
T Consensus 158 ~~---~~~~~~~~~~~~~g--~~~~~~ 179 (214)
T 1yzh_A 158 NR---GLFEYSLVSFSQYG--MKLNGV 179 (214)
T ss_dssp CH---HHHHHHHHHHHHHT--CEEEEE
T ss_pred CH---HHHHHHHHHHHHCC--Ceeeec
Confidence 21 11123344555554 444443
No 65
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.05 E-value=1.7e-09 Score=113.96 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=90.5
Q ss_pred ccC-CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004787 73 FLD-VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (730)
Q Consensus 73 lLd-~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp 150 (730)
.+. +.++.+|||+|||+|..+..+++.. ...|+++|+++.++..+++++++.+.. ++.+...|+..+|
T Consensus 111 ~l~~~~~~~~vLDiGcG~G~~~~~la~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 111 HLGQAGPDDTLVDAGCGRGGSMVMAHRRF----------GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180 (312)
T ss_dssp TSCCCCTTCEEEEESCTTSHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HhccCCCCCEEEEecCCCCHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC
Confidence 344 7899999999999999999998874 258999999999999999999999875 7999999887654
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||.|++.- ++. .+ . +..+|..+.++|||||+
T Consensus 181 ~---------------------~~~~fD~V~~~~------~l~-------~~---------~-~~~~l~~~~~~LkpgG~ 216 (312)
T 3vc1_A 181 F---------------------DKGAVTASWNNE------STM-------YV---------D-LHDLFSEHSRFLKVGGR 216 (312)
T ss_dssp C---------------------CTTCEEEEEEES------CGG-------GS---------C-HHHHHHHHHHHEEEEEE
T ss_pred C---------------------CCCCEeEEEECC------chh-------hC---------C-HHHHHHHHHHHcCCCcE
Confidence 1 126799999721 111 11 0 56789999999999999
Q ss_pred EEEEcCCCCC
Q 004787 231 IVYSTCSMNP 240 (730)
Q Consensus 231 LVYSTCSl~p 240 (730)
|++++.....
T Consensus 217 l~~~~~~~~~ 226 (312)
T 3vc1_A 217 YVTITGCWNP 226 (312)
T ss_dssp EEEEEEEECT
T ss_pred EEEEEccccc
Confidence 9998865443
No 66
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.04 E-value=1e-09 Score=108.14 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=86.1
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
...+++.++.+|||+|||+|..+.+++.. .+.|+++|+++.++..+++++++++..++.+...|+...+
T Consensus 70 ~~~l~~~~~~~vLdiG~G~G~~~~~la~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 70 TELLELTPQSRVLEIGTGSGYQTAILAHL-----------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHhcCCCCCCEEEEEcCCCCHHHHHHHHh-----------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 44567899999999999999999999886 3689999999999999999999999889999998876632
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||.|+++..+. ..++ .+.++|||||+
T Consensus 139 ~---------------------~~~~~D~i~~~~~~~------~~~~----------------------~~~~~L~pgG~ 169 (210)
T 3lbf_A 139 Q---------------------ARAPFDAIIVTAAPP------EIPT----------------------ALMTQLDEGGI 169 (210)
T ss_dssp G---------------------GGCCEEEEEESSBCS------SCCT----------------------HHHHTEEEEEE
T ss_pred c---------------------cCCCccEEEEccchh------hhhH----------------------HHHHhcccCcE
Confidence 1 126799999975421 1111 35779999999
Q ss_pred EEEEcCC
Q 004787 231 IVYSTCS 237 (730)
Q Consensus 231 LVYSTCS 237 (730)
||.+...
T Consensus 170 lv~~~~~ 176 (210)
T 3lbf_A 170 LVLPVGE 176 (210)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9998665
No 67
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.04 E-value=2e-10 Score=121.31 Aligned_cols=137 Identities=12% Similarity=-0.015 Sum_probs=95.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCcc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~fp~~~ 153 (730)
.+.+|||+|||+|+.+..+++.. +.+.|+++|+|+..+..+++++.++ +.+++.+...|+..+..
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-- 158 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD---------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-- 158 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST---------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG--
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh--
Confidence 45799999999999999887642 2479999999999999999988652 24678999998876421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....||.|++|+|+.+.|.. .. -.+.+++..+.++|+|||+||+
T Consensus 159 ------------------~~~~~fD~Ii~d~~~~~~~~~---------------~~--l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 159 ------------------KFKNEFDVIIIDSTDPTAGQG---------------GH--LFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp ------------------GCSSCEEEEEEEC---------------------------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred ------------------hCCCCceEEEEcCCCcccCch---------------hh--hhHHHHHHHHHHhcCCCcEEEE
Confidence 012579999999986422210 00 1235788899999999999999
Q ss_pred EcCC--CCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 234 STCS--MNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 234 STCS--l~p~ENEaVV~~~L~~~~~~velv 261 (730)
.+|+ +++.+...+++.+.+... .+.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~F~-~v~~~ 232 (296)
T 1inl_A 204 ETEDPFYDIGWFKLAYRRISKVFP-ITRVY 232 (296)
T ss_dssp ECCCTTTTHHHHHHHHHHHHHHCS-EEEEE
T ss_pred EccCcccCHHHHHHHHHHHHHHCC-ceEEE
Confidence 9998 455666666666555432 44443
No 68
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.03 E-value=9.8e-10 Score=109.95 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=89.3
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..||... |...|+|+|+++.++..+++++++.+..|+.+...|+..++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~---- 103 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN---------PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV---- 103 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH----
T ss_pred CCCceEEEEecCCCHHHHHHHHHC---------CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----
Confidence 467899999999999999998873 3579999999999999999999999999999999998764321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.....||.|++..|+- |.+.. .....+ .+..+|..+.++|||||+|+++|-
T Consensus 104 ---------------~~~~~~d~v~~~~~~p-----------~~~~~-~~~~rl--~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 104 ---------------FEPGEVKRVYLNFSDP-----------WPKKR-HEKRRL--TYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp ---------------CCTTSCCEEEEESCCC-----------CCSGG-GGGGST--TSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ---------------cCcCCcCEEEEECCCC-----------CcCcc-cccccc--CcHHHHHHHHHHcCCCCEEEEEeC
Confidence 1125699999865521 11100 000111 256789999999999999999873
No 69
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.03 E-value=3.7e-10 Score=114.22 Aligned_cols=122 Identities=11% Similarity=0.066 Sum_probs=93.7
Q ss_pred EccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Q 004787 62 RQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLI 140 (730)
Q Consensus 62 ~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~ 140 (730)
.|.....+...++...++.+|||+|||+|..|..++..+ +.+.|+++|+++.++..+++++++.+.. ++.
T Consensus 55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 125 (232)
T 3ntv_A 55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS---------DDIHVTTIERNETMIQYAKQNLATYHFENQVR 125 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC---------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEE
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE
Confidence 344444444555666788999999999999999998742 3589999999999999999999999975 799
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
+...|+..+..- .....||.|++|.++.. +..++..
T Consensus 126 ~~~~d~~~~~~~-------------------~~~~~fD~V~~~~~~~~-------------------------~~~~l~~ 161 (232)
T 3ntv_A 126 IIEGNALEQFEN-------------------VNDKVYDMIFIDAAKAQ-------------------------SKKFFEI 161 (232)
T ss_dssp EEESCGGGCHHH-------------------HTTSCEEEEEEETTSSS-------------------------HHHHHHH
T ss_pred EEECCHHHHHHh-------------------hccCCccEEEEcCcHHH-------------------------HHHHHHH
Confidence 999988663110 00267999999865322 2457888
Q ss_pred HHhhccCCCEEEEEcC
Q 004787 221 GISLLKVGGRIVYSTC 236 (730)
Q Consensus 221 Al~lLKpGGrLVYSTC 236 (730)
+.++|||||+||+..+
T Consensus 162 ~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 162 YTPLLKHQGLVITDNV 177 (232)
T ss_dssp HGGGEEEEEEEEEECT
T ss_pred HHHhcCCCeEEEEeeC
Confidence 9999999999998544
No 70
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.03 E-value=7e-10 Score=112.49 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=95.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
++.++.+|||+|||+|..+..++... +.+.|+|+|+++.++..+++++++++..++.+.+.|+..++..
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 135 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICF---------PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-- 135 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc--
Confidence 45678999999999999999998752 3579999999999999999999999988899999988765420
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
......||.|+++.. .. ...++..+.++|||||++++.
T Consensus 136 ----------------~~~~~~fD~V~~~~~----------------------~~----~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 136 ----------------KDVRESYDIVTARAV----------------------AR----LSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp ----------------TTTTTCEEEEEEECC----------------------SC----HHHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------ccccCCccEEEEecc----------------------CC----HHHHHHHHHHhcCCCCEEEEE
Confidence 001257999998541 00 246788999999999999998
Q ss_pred cCCCCCCCcHHHHHHHHHHCC
Q 004787 235 TCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~ 255 (730)
.+.....|-+ -+...++..+
T Consensus 174 ~g~~~~~~~~-~~~~~l~~~g 193 (240)
T 1xdz_A 174 KAASAEEELN-AGKKAITTLG 193 (240)
T ss_dssp ECC-CHHHHH-HHHHHHHHTT
T ss_pred eCCCchHHHH-HHHHHHHHcC
Confidence 7765433322 2345566665
No 71
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.02 E-value=1.9e-10 Score=114.55 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=95.4
Q ss_pred EEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-
Q 004787 60 ITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN- 138 (730)
Q Consensus 60 i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n- 138 (730)
+..+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|+++.++..+++++++.+..+
T Consensus 46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 117 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPK--------DGTLITCDVDEKSTALAKEYWEKAGLSDK 117 (225)
T ss_dssp GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCT--------TCEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCC--------CCEEEEEeCCHHHHHHHHHHHHHCCCCCc
Confidence 3344444444445556678899999999999999999886532 5899999999999999999999999865
Q ss_pred eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHH
Q 004787 139 LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIA 218 (730)
Q Consensus 139 v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL 218 (730)
+.+...|+..+... + ........||.|++|++. ..+..++
T Consensus 118 v~~~~~d~~~~~~~-~--------------~~~~~~~~fD~v~~~~~~-------------------------~~~~~~l 157 (225)
T 3tr6_A 118 IGLRLSPAKDTLAE-L--------------IHAGQAWQYDLIYIDADK-------------------------ANTDLYY 157 (225)
T ss_dssp EEEEESCHHHHHHH-H--------------HTTTCTTCEEEEEECSCG-------------------------GGHHHHH
T ss_pred eEEEeCCHHHHHHH-h--------------hhccCCCCccEEEECCCH-------------------------HHHHHHH
Confidence 88888887542110 0 000011579999998861 1124578
Q ss_pred HHHHhhccCCCEEEEEcCCC
Q 004787 219 MRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 219 ~rAl~lLKpGGrLVYSTCSl 238 (730)
..+.++|||||+||...+.+
T Consensus 158 ~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 158 EESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp HHHHHHEEEEEEEEEECSSG
T ss_pred HHHHHhcCCCcEEEEeCCCc
Confidence 88999999999999876553
No 72
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.02 E-value=5.3e-10 Score=110.85 Aligned_cols=109 Identities=19% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..++.. ....|+|+|+++..+..++++++..+..++.+.+.|+..+..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~----------~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~------ 117 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR----------YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA------ 117 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----------TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS------
T ss_pred CCCeEEEeCCCcCHHHHHHHhc----------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh------
Confidence 6789999999999999887654 125899999999999999999999988889999988766321
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH--HhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG--ISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA--l~lLKpGGrLVYST 235 (730)
.....||.|++|+|.. .+. ...++... .++|+|||+|++++
T Consensus 118 --------------~~~~~fD~V~~~~p~~-~~~----------------------~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 118 --------------QKGTPHNIVFVDPPFR-RGL----------------------LEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp --------------SCCCCEEEEEECCSSS-TTT----------------------HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --------------hcCCCCCEEEECCCCC-CCc----------------------HHHHHHHHHhcCccCCCcEEEEEE
Confidence 0125799999999932 110 01223333 44699999999998
Q ss_pred CCCC
Q 004787 236 CSMN 239 (730)
Q Consensus 236 CSl~ 239 (730)
|+..
T Consensus 161 ~~~~ 164 (202)
T 2fpo_A 161 EVEN 164 (202)
T ss_dssp EGGG
T ss_pred CCCc
Confidence 8754
No 73
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.01 E-value=6e-09 Score=106.43 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=98.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccccc-CCCcc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQH-FPGCR 153 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~-fp~~~ 153 (730)
+.+|++|||+|||+|..++.++..- +.+.|+|+|+++..+..+++|++++|+.+ +.+...|+.. ++.
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-- 81 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERG---------QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-- 81 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--
Confidence 4689999999999999999987751 36899999999999999999999999864 8888888743 110
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++ .|.| ..+-.+||..+...|++||++|.
T Consensus 82 --------------------~~~~D~Ivi----aG~G--------------------g~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 82 --------------------TDQVSVITI----AGMG--------------------GRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp --------------------GGCCCEEEE----EEEC--------------------HHHHHHHHHHTGGGCTTCCEEEE
T ss_pred --------------------CcCCCEEEE----cCCC--------------------hHHHHHHHHHHHHHhCCCCEEEE
Confidence 126999886 2322 13346799999999999999999
Q ss_pred EcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 234 STCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
+.. .....|..+|.++| |++++
T Consensus 118 q~~-----~~~~~vr~~L~~~G--f~i~~ 139 (225)
T 3kr9_A 118 QPN-----NREDDLRIWLQDHG--FQIVA 139 (225)
T ss_dssp EES-----SCHHHHHHHHHHTT--EEEEE
T ss_pred ECC-----CCHHHHHHHHHHCC--CEEEE
Confidence 654 47888899999876 55554
No 74
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.01 E-value=1.1e-09 Score=106.93 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
++++.+|||+|||||+.|..+++.++. +.+.|+|+|+++.. ..+++.+...|+...+...+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~-------~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~ 81 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKN-------YKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIK 81 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTT-------SCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCC-------CCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhc
Confidence 467899999999999999999987531 14899999999831 235677888887664410000
Q ss_pred C--CCCCCCccccccc--cccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 156 K--NFSSASDKGIESE--SNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 156 ~--~~~~~~~~~~~~~--~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
. ............. .......||.|++|.++...|.- ..+ ......++..+|..+.++|||||++
T Consensus 82 ~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~--~~d---------~~~~~~~~~~~l~~~~~~LkpgG~l 150 (201)
T 2plw_A 82 NINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK--IDD---------HLNSCELTLSITHFMEQYINIGGTY 150 (201)
T ss_dssp ----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH--HHH---------HHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc--ccC---------HHHHHHHHHHHHHHHHHHccCCCEE
Confidence 0 0000000000000 00123589999999865444420 011 1122345678999999999999999
Q ss_pred EEEcCCCCCCCcHHHHHHHHHH
Q 004787 232 VYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 232 VYSTCSl~p~ENEaVV~~~L~~ 253 (730)
+.++.. .++...+...|+.
T Consensus 151 v~~~~~---~~~~~~l~~~l~~ 169 (201)
T 2plw_A 151 IVKMYL---GSQTNNLKTYLKG 169 (201)
T ss_dssp EEEEEC---STTHHHHHHHHHT
T ss_pred EEEEeC---CCCHHHHHHHHHH
Confidence 986543 2555556666665
No 75
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.00 E-value=1.5e-09 Score=111.90 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=91.7
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-C--CCceEEEecccc
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-C--TANLIVTNHEAQ 147 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g--~~nv~vt~~Da~ 147 (730)
...+++.++.+|||+|||+|..+..++..++ +.+.|+++|+++.++..++.+++.. + ..++.+...|+.
T Consensus 92 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVG--------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHcCCCCCCEEEEEcccccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 3456889999999999999999999998764 3589999999999999999999887 6 678899888876
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
..+. ....||.|++|+| +.| .+|.++.++|+|
T Consensus 164 ~~~~---------------------~~~~~D~v~~~~~-----------~~~----------------~~l~~~~~~L~p 195 (280)
T 1i9g_A 164 DSEL---------------------PDGSVDRAVLDML-----------APW----------------EVLDAVSRLLVA 195 (280)
T ss_dssp GCCC---------------------CTTCEEEEEEESS-----------CGG----------------GGHHHHHHHEEE
T ss_pred hcCC---------------------CCCceeEEEECCc-----------CHH----------------HHHHHHHHhCCC
Confidence 6421 1257999999876 111 358888999999
Q ss_pred CCEEEEEcCCC
Q 004787 228 GGRIVYSTCSM 238 (730)
Q Consensus 228 GGrLVYSTCSl 238 (730)
||+++.++++.
T Consensus 196 gG~l~~~~~~~ 206 (280)
T 1i9g_A 196 GGVLMVYVATV 206 (280)
T ss_dssp EEEEEEEESSH
T ss_pred CCEEEEEeCCH
Confidence 99999988765
No 76
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.00 E-value=3.3e-10 Score=112.11 Aligned_cols=121 Identities=10% Similarity=0.042 Sum_probs=91.4
Q ss_pred ccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Q 004787 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIV 141 (730)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~v 141 (730)
+.....+...++...++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+.. ++.+
T Consensus 41 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 112 (210)
T 3c3p_A 41 DRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISI--------SSRVVMIDPDRDNVEHARRMLHDNGLIDRVEL 112 (210)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCT--------TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEE
T ss_pred CHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHCCCCceEEE
Confidence 3333334334445557789999999999999999876531 589999999999999999999988875 5888
Q ss_pred EecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 142 TNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 142 t~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
...|+..+ +. ... ||.|++|.++. .+..++..
T Consensus 113 ~~~d~~~~~~~---------------------~~~-fD~v~~~~~~~-------------------------~~~~~l~~ 145 (210)
T 3c3p_A 113 QVGDPLGIAAG---------------------QRD-IDILFMDCDVF-------------------------NGADVLER 145 (210)
T ss_dssp EESCHHHHHTT---------------------CCS-EEEEEEETTTS-------------------------CHHHHHHH
T ss_pred EEecHHHHhcc---------------------CCC-CCEEEEcCChh-------------------------hhHHHHHH
Confidence 88887653 21 125 99999985421 12457888
Q ss_pred HHhhccCCCEEEEEcCCC
Q 004787 221 GISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 221 Al~lLKpGGrLVYSTCSl 238 (730)
+.++|||||+||+..+.+
T Consensus 146 ~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 146 MNRCLAKNALLIAVNALR 163 (210)
T ss_dssp HGGGEEEEEEEEEESSSS
T ss_pred HHHhcCCCeEEEEECccc
Confidence 999999999999987655
No 77
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.99 E-value=3.8e-09 Score=106.93 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=89.8
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~ 152 (730)
..+.++.+|||+|||+|..+..+++.. .+.|+|+|+++..+..++.+++..+..+ +.+...|+..+|.
T Consensus 42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~- 110 (257)
T 3f4k_A 42 NELTDDAKIADIGCGTGGQTLFLADYV----------KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF- 110 (257)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHC----------CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS-
T ss_pred hcCCCCCeEEEeCCCCCHHHHHHHHhC----------CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC-
Confidence 367889999999999999999998873 2499999999999999999999998765 8899998876542
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++... +... + ...+|..+.++|||||+++
T Consensus 111 --------------------~~~~fD~v~~~~~------l~~~-~----------------~~~~l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 111 --------------------QNEELDLIWSEGA------IYNI-G----------------FERGMNEWSKYLKKGGFIA 147 (257)
T ss_dssp --------------------CTTCEEEEEEESC------SCCC-C----------------HHHHHHHHHTTEEEEEEEE
T ss_pred --------------------CCCCEEEEEecCh------Hhhc-C----------------HHHHHHHHHHHcCCCcEEE
Confidence 1267999998532 1110 0 1458899999999999999
Q ss_pred EEcCCCCC
Q 004787 233 YSTCSMNP 240 (730)
Q Consensus 233 YSTCSl~p 240 (730)
.+++++..
T Consensus 148 ~~~~~~~~ 155 (257)
T 3f4k_A 148 VSEASWFT 155 (257)
T ss_dssp EEEEEESS
T ss_pred EEEeeccC
Confidence 99876443
No 78
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.98 E-value=2.5e-09 Score=101.79 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=98.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+++.++.+|||+|||+|..+..++. . ...|+|+|+++..+..+++++++.+..++.+...|+.. +
T Consensus 30 ~~~~~~~~~vLdiG~G~G~~~~~l~~--~---------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-- 95 (183)
T 2yxd_A 30 KLNLNKDDVVVDVGCGSGGMTVEIAK--R---------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V-- 95 (183)
T ss_dssp HHCCCTTCEEEEESCCCSHHHHHHHT--T---------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H--
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHh--c---------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c--
Confidence 34667899999999999999998876 2 47999999999999999999999998888888887654 1
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|+++.+ . + ...++..+.++ |||+++
T Consensus 96 -------------------~~~~~~D~i~~~~~----~----~------------------~~~~l~~~~~~--~gG~l~ 128 (183)
T 2yxd_A 96 -------------------LDKLEFNKAFIGGT----K----N------------------IEKIIEILDKK--KINHIV 128 (183)
T ss_dssp -------------------GGGCCCSEEEECSC----S----C------------------HHHHHHHHHHT--TCCEEE
T ss_pred -------------------ccCCCCcEEEECCc----c----c------------------HHHHHHHHhhC--CCCEEE
Confidence 11157999999766 0 1 12456666666 999999
Q ss_pred EEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 233 YSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+++|+. ++-.-+...|++++..++.+..
T Consensus 129 ~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 156 (183)
T 2yxd_A 129 ANTIVL---ENAAKIINEFESRGYNVDAVNV 156 (183)
T ss_dssp EEESCH---HHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeccc---ccHHHHHHHHHHcCCeEEEEEe
Confidence 999876 4445577788888766666653
No 79
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.98 E-value=2.9e-09 Score=113.52 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=84.4
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----------CCceE
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----------TANLI 140 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-----------~~nv~ 140 (730)
..+++.+|.+|||+|||+|..+..++..++ +.+.|+|+|+++.++..+++++.+++ ..++.
T Consensus 99 ~~l~~~~g~~VLDiG~G~G~~~~~la~~~g--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 99 SMMDINPGDTVLEAGSGSGGMSLFLSKAVG--------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp HHHTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 456889999999999999999999998764 25899999999999999999998753 35788
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
+...|+..+.. ......||+|++|+|.. | .++..
T Consensus 171 ~~~~d~~~~~~-------------------~~~~~~fD~V~~~~~~~--------------~-------------~~l~~ 204 (336)
T 2b25_A 171 FIHKDISGATE-------------------DIKSLTFDAVALDMLNP--------------H-------------VTLPV 204 (336)
T ss_dssp EEESCTTCCC--------------------------EEEEEECSSST--------------T-------------TTHHH
T ss_pred EEECChHHccc-------------------ccCCCCeeEEEECCCCH--------------H-------------HHHHH
Confidence 88888766421 01124699999987621 1 15778
Q ss_pred HHhhccCCCEEEEEc
Q 004787 221 GISLLKVGGRIVYST 235 (730)
Q Consensus 221 Al~lLKpGGrLVYST 235 (730)
+.++|+|||+|+..+
T Consensus 205 ~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 205 FYPHLKHGGVCAVYV 219 (336)
T ss_dssp HGGGEEEEEEEEEEE
T ss_pred HHHhcCCCcEEEEEe
Confidence 899999999998543
No 80
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.97 E-value=1.2e-10 Score=119.34 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=105.5
Q ss_pred hhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 41 NQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 41 ~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
.+.+..+.++-. ....|.+..+.....+...++...++.+|||+|||+|..|..||+.+.. .|.|+++|++
T Consensus 24 ~~~l~~~~~~~~-~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~--------~~~v~~iD~~ 94 (242)
T 3r3h_A 24 HPALAALRKETS-TMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPD--------DGQVITCDIN 94 (242)
T ss_dssp CHHHHHHHHTTS-SSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCT--------TCEEEEEECC
T ss_pred CHHHHHHHHHHH-hCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCC--------CCEEEEEECC
Confidence 344555555422 2223444455555556666666677889999999999999999987632 5899999999
Q ss_pred HHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhh
Q 004787 121 VQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIW 199 (730)
Q Consensus 121 ~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~ 199 (730)
+.++..+++++++.+.. ++.+..+|+..+..... .......||.|++|+++.
T Consensus 95 ~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~---------------~~~~~~~fD~V~~d~~~~------------ 147 (242)
T 3r3h_A 95 EGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLL---------------NEGGEHQFDFIFIDADKT------------ 147 (242)
T ss_dssp CSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHH---------------HHHCSSCEEEEEEESCGG------------
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHh---------------hccCCCCEeEEEEcCChH------------
Confidence 99999999999999975 79999998865321000 000126799999987510
Q ss_pred hhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 200 RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 200 ~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
.....+..++++|||||+||+..+.+
T Consensus 148 -------------~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 148 -------------NYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp -------------GHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred -------------HhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 01346888899999999999875543
No 81
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.97 E-value=2.8e-09 Score=106.58 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=84.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++++|||+|||+|..+..+++.++. .+.|+|+|+++.++..+++++++. .++.+...|+......
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~--------~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~- 137 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGW--------EGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEY- 137 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCT--------TSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGG-
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCC--------CeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchh-
Confidence 34788999999999999999999988642 479999999999999998888765 6788888887652210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
......||.|++|+| .++ ....++..+.++|||||++++
T Consensus 138 -----------------~~~~~~~D~v~~~~~---------~~~---------------~~~~~l~~~~~~LkpgG~l~~ 176 (227)
T 1g8a_A 138 -----------------RALVPKVDVIFEDVA---------QPT---------------QAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp -----------------TTTCCCEEEEEECCC---------STT---------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------------hcccCCceEEEECCC---------CHh---------------HHHHHHHHHHHhcCCCCEEEE
Confidence 001247999999887 111 112348889999999999998
Q ss_pred Ec
Q 004787 234 ST 235 (730)
Q Consensus 234 ST 235 (730)
+.
T Consensus 177 ~~ 178 (227)
T 1g8a_A 177 AV 178 (227)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 82
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.97 E-value=1.7e-09 Score=109.12 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..+|... |...|+|+|+++.++..++.++++.+..|+.+..+|+..+..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~---------p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~----- 98 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR---------PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH----- 98 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH-----
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC---------CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH-----
Confidence 468899999999999999998863 457899999999999999999999999999999999876311
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.......||.|++..|.. |.+ ..-..-.-.|..++..+.++|||||+++.+|-
T Consensus 99 -------------~~~~~~~~d~v~~~~~~p-----------~~~---~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 99 -------------KMIPDNSLRMVQLFFPDP-----------WHK---ARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp -------------HHSCTTCEEEEEEESCCC-----------CCS---GGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -------------HHcCCCChheEEEeCCCC-----------ccc---hhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 001236899999874421 111 00000001235689999999999999999874
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
.
T Consensus 152 ~ 152 (218)
T 3dxy_A 152 W 152 (218)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.96 E-value=2.4e-09 Score=113.55 Aligned_cols=108 Identities=15% Similarity=0.239 Sum_probs=86.7
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
...++++++++|||+|||+|..+..+++.... .+.|+++|+++.++..+++++++.+..++.+...|+...+
T Consensus 68 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE--------KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (317)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT--------TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHhcCCCCcCEEEEecCCchHHHHHHHHhcCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence 34567899999999999999999999987431 4789999999999999999999999888888888876632
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||+|+++.++...+ ..+.++|||||+
T Consensus 140 ~---------------------~~~~fD~Iv~~~~~~~~~----------------------------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 140 P---------------------EFSPYDVIFVTVGVDEVP----------------------------ETWFTQLKEGGR 170 (317)
T ss_dssp G---------------------GGCCEEEEEECSBBSCCC----------------------------HHHHHHEEEEEE
T ss_pred c---------------------cCCCeEEEEEcCCHHHHH----------------------------HHHHHhcCCCcE
Confidence 1 125799999987753221 234678999999
Q ss_pred EEEEc
Q 004787 231 IVYST 235 (730)
Q Consensus 231 LVYST 235 (730)
|+.+.
T Consensus 171 lvi~~ 175 (317)
T 1dl5_A 171 VIVPI 175 (317)
T ss_dssp EEEEB
T ss_pred EEEEE
Confidence 99984
No 84
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.96 E-value=2.9e-09 Score=108.41 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=96.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--------CCCceEEEecccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--------CTANLIVTNHEAQ 147 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl--------g~~nv~vt~~Da~ 147 (730)
+.++.+|||+|||+|..+..++... +.+.|+|+|+++.++..++.+++.+ +..|+.+...|+.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~ 117 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF---------PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAM 117 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS---------TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC---------CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHH
Confidence 3578899999999999999998873 3578999999999999999998877 7789999999987
Q ss_pred cC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004787 148 HF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (730)
Q Consensus 148 ~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (730)
.+ +. ......||.|++..|.. |.+... ....+ .+..++..+.++|+
T Consensus 118 ~~l~~-------------------~~~~~~~d~v~~~~p~p-----------~~k~~~-~~~r~--~~~~~l~~~~~~Lk 164 (246)
T 2vdv_E 118 KFLPN-------------------FFEKGQLSKMFFCFPDP-----------HFKQRK-HKARI--ITNTLLSEYAYVLK 164 (246)
T ss_dssp SCGGG-------------------TSCTTCEEEEEEESCCC-----------C-------CSSC--CCHHHHHHHHHHEE
T ss_pred HHHHH-------------------hccccccCEEEEECCCc-----------ccccch-hHHhh--ccHHHHHHHHHHcC
Confidence 63 21 01236789998765521 111000 00011 24678999999999
Q ss_pred CCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 227 VGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 227 pGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velv 261 (730)
|||+|+++|-. .+-...+...+..++. ++.+
T Consensus 165 pgG~l~~~td~---~~~~~~~~~~~~~~~~-~~~~ 195 (246)
T 2vdv_E 165 EGGVVYTITDV---KDLHEWMVKHLEEHPL-FERL 195 (246)
T ss_dssp EEEEEEEEESC---HHHHHHHHHHHHHSTT-EEEC
T ss_pred CCCEEEEEecc---HHHHHHHHHHHHhCcC-eEec
Confidence 99999986532 2223444555555543 4443
No 85
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.95 E-value=3.1e-09 Score=110.27 Aligned_cols=112 Identities=21% Similarity=0.121 Sum_probs=86.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~ 154 (730)
++||.+|||+|||+|..|..|++.+.. +...|+|+|+++..+..++++++..+. .++.+.+.|+..+|.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~-------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCS-------SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC---
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCC-------CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc---
Confidence 578999999999999999999887543 345899999999999999999988775 468899998877542
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
..||.|++- .++..-+ ......+|.+..+.|||||++|.+
T Consensus 138 --------------------~~~d~v~~~------~~l~~~~--------------~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 138 --------------------ENASMVVLN------FTLQFLE--------------PSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp --------------------CSEEEEEEE------SCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------------cccccceee------eeeeecC--------------chhHhHHHHHHHHHcCCCcEEEEE
Confidence 458999872 1221111 012246899999999999999987
Q ss_pred cCC
Q 004787 235 TCS 237 (730)
Q Consensus 235 TCS 237 (730)
.-.
T Consensus 178 e~~ 180 (261)
T 4gek_A 178 EKF 180 (261)
T ss_dssp EEB
T ss_pred ecc
Confidence 543
No 86
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.95 E-value=1.5e-08 Score=103.78 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=99.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+.+|++|||+|||+|..++.++.. + +.+.|+|+|+++..+..+++|++++|..+ +.+..+|+.....
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~-~--------~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~--- 86 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM-G--------YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE--- 86 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT-T--------CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---
T ss_pred CCCCCEEEEECCchHHHHHHHHHh-C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc---
Confidence 568999999999999999998775 1 35799999999999999999999999864 8999888765221
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++ .|.| ..+-.+||..+...|+++|++|.|
T Consensus 87 ------------------~~~~~D~Ivi----aGmG--------------------g~lI~~IL~~~~~~l~~~~~lIlq 124 (230)
T 3lec_A 87 ------------------EADNIDTITI----CGMG--------------------GRLIADILNNDIDKLQHVKTLVLQ 124 (230)
T ss_dssp ------------------GGGCCCEEEE----EEEC--------------------HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred ------------------cccccCEEEE----eCCc--------------------hHHHHHHHHHHHHHhCcCCEEEEE
Confidence 1136999875 2322 134567999999999999999987
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.- .++..|.++|.++| |++++
T Consensus 125 p~-----~~~~~lr~~L~~~G--f~i~~ 145 (230)
T 3lec_A 125 PN-----NREDDLRKWLAAND--FEIVA 145 (230)
T ss_dssp ES-----SCHHHHHHHHHHTT--EEEEE
T ss_pred CC-----CChHHHHHHHHHCC--CEEEE
Confidence 62 46888999999876 55554
No 87
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.94 E-value=5.5e-09 Score=105.68 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=87.8
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~ 151 (730)
.+.+.++.+|||++||+|..+..++..+ ...|+++|+++..+..++++++..+.. ++.+...|+..++.
T Consensus 31 ~~~~~~~~~VLDiGcG~G~~~~~la~~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 100 (256)
T 1nkv_A 31 VLRMKPGTRILDLGSGSGEMLCTWARDH----------GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 100 (256)
T ss_dssp HTCCCTTCEEEEETCTTCHHHHHHHHHT----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHhc----------CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence 3567899999999999999999998874 258999999999999999999988874 78898888876431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
...||.|++- +.+...++ ..++|..+.++|||||+|
T Consensus 101 ----------------------~~~fD~V~~~------~~~~~~~~----------------~~~~l~~~~r~LkpgG~l 136 (256)
T 1nkv_A 101 ----------------------NEKCDVAACV------GATWIAGG----------------FAGAEELLAQSLKPGGIM 136 (256)
T ss_dssp ----------------------SSCEEEEEEE------SCGGGTSS----------------SHHHHHHHTTSEEEEEEE
T ss_pred ----------------------CCCCCEEEEC------CChHhcCC----------------HHHHHHHHHHHcCCCeEE
Confidence 2679999972 11111111 256789999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
+.++...
T Consensus 137 ~~~~~~~ 143 (256)
T 1nkv_A 137 LIGEPYW 143 (256)
T ss_dssp EEEEEEE
T ss_pred EEecCcc
Confidence 9986543
No 88
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.94 E-value=4.2e-09 Score=105.98 Aligned_cols=110 Identities=27% Similarity=0.421 Sum_probs=84.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.++++++.+|||++||+|..+..+++.++ +.+.|+|+|+++..+..+.+++++. .++.+...|+.....+
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g--------~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~ 141 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVG--------PDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKY 141 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGG
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhh
Confidence 34678999999999999999999998863 2579999999999888888888765 6788888887653211
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
......||.|++|+| .++ ....++.++.++|||||+++
T Consensus 142 ------------------~~~~~~~D~V~~~~~---------~~~---------------~~~~~~~~~~~~LkpgG~l~ 179 (233)
T 2ipx_A 142 ------------------RMLIAMVDVIFADVA---------QPD---------------QTRIVALNAHTFLRNGGHFV 179 (233)
T ss_dssp ------------------GGGCCCEEEEEECCC---------CTT---------------HHHHHHHHHHHHEEEEEEEE
T ss_pred ------------------cccCCcEEEEEEcCC---------Ccc---------------HHHHHHHHHHHHcCCCeEEE
Confidence 011257999999887 111 11345777999999999999
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
.+
T Consensus 180 i~ 181 (233)
T 2ipx_A 180 IS 181 (233)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 89
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.94 E-value=3.6e-09 Score=108.36 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=90.1
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~ 153 (730)
.+.++.+|||+|||+|..+..+++. +.+.|+++|+++..+..++.+++..+.. ++.+...|+..+|.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 110 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGH----------VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF-- 110 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTT----------CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--
Confidence 4678999999999999999998765 2469999999999999999999998875 59999998876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++...... + -...+|..+.++|||||+++.
T Consensus 111 -------------------~~~~fD~i~~~~~~~~-------------~----------~~~~~l~~~~~~LkpgG~l~~ 148 (267)
T 3kkz_A 111 -------------------RNEELDLIWSEGAIYN-------------I----------GFERGLNEWRKYLKKGGYLAV 148 (267)
T ss_dssp -------------------CTTCEEEEEESSCGGG-------------T----------CHHHHHHHHGGGEEEEEEEEE
T ss_pred -------------------CCCCEEEEEEcCCcee-------------c----------CHHHHHHHHHHHcCCCCEEEE
Confidence 1267999998433110 0 014578999999999999999
Q ss_pred EcCCCCCCC
Q 004787 234 STCSMNPVE 242 (730)
Q Consensus 234 STCSl~p~E 242 (730)
+++++....
T Consensus 149 ~~~~~~~~~ 157 (267)
T 3kkz_A 149 SECSWFTDE 157 (267)
T ss_dssp EEEEESSSC
T ss_pred EEeeecCCC
Confidence 988755443
No 90
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.94 E-value=1.9e-09 Score=120.02 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=113.2
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCC----CCCCeEEEEEeCCHHHHHHHHHHH
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG----ALPNGMVIANDLDVQRCNLLIHQT 131 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~----~~p~G~VvAnD~d~~Rl~~L~~nl 131 (730)
..|.++--...+.+.+.++++.++.+|||.|||+|+.+.++++.+....... ..+...|+|+|+++..+.+++.|+
T Consensus 149 ~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl 228 (445)
T 2okc_A 149 GAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 228 (445)
T ss_dssp CCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence 4566655444555556677889999999999999999999998874210000 001256999999999999999999
Q ss_pred HHcCCC--ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccC---hhhhhhccccc
Q 004787 132 KRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA---PDIWRKWNVGL 206 (730)
Q Consensus 132 kRlg~~--nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~---pd~~~~w~~~~ 206 (730)
...|.. ++.+.++|+...+. ...||.|+++||.++....... .+.+ + +
T Consensus 229 ~l~g~~~~~~~i~~gD~l~~~~----------------------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~--~-~-- 281 (445)
T 2okc_A 229 YLHGIGTDRSPIVCEDSLEKEP----------------------STLVDVILANPPFGTRPAGSVDINRPDFY--V-E-- 281 (445)
T ss_dssp HHTTCCSSCCSEEECCTTTSCC----------------------SSCEEEEEECCCSSCCCTTCCCCCCTTSS--S-C--
T ss_pred HHhCCCcCCCCEeeCCCCCCcc----------------------cCCcCEEEECCCCCCcccccchhhHhhcC--C-C--
Confidence 887764 56667777654321 1379999999999986643221 0111 1 1
Q ss_pred ccchHHHHHHHHHHHHhhccCCCEEEEEcCC--CCCCCcHHHHHH-HHHH
Q 004787 207 GNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAE-ILRK 253 (730)
Q Consensus 207 ~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS--l~p~ENEaVV~~-~L~~ 253 (730)
-...+...+.+++++||+||++++.++. +.....+..+.+ +++.
T Consensus 282 ---~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~ 328 (445)
T 2okc_A 282 ---TKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD 328 (445)
T ss_dssp ---CSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred ---CcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhc
Confidence 1224677899999999999999998864 333333444554 4544
No 91
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.93 E-value=6.6e-10 Score=117.55 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=92.0
Q ss_pred EEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce
Q 004787 60 ITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL 139 (730)
Q Consensus 60 i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv 139 (730)
+..+.......+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++++.+.+++
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-----------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v 92 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-----------AKKVITIDIDSRMISEVKKRCLYEGYNNL 92 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-----------SSEEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 3334333334445677889999999999999999988764 36899999999999999999988888888
Q ss_pred EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcc--cccccchHHHHHHH
Q 004787 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN--VGLGNGLHSLQVQI 217 (730)
Q Consensus 140 ~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~--~~~~~~L~~lQ~~I 217 (730)
.+...|+..++. ..||.|++|+|+.... |.+++... ......+.-.|.
T Consensus 93 ~~~~~D~~~~~~-----------------------~~~D~Vv~n~py~~~~-----~~~~~ll~~~~~~~~~~l~~Q~-- 142 (299)
T 2h1r_A 93 EVYEGDAIKTVF-----------------------PKFDVCTANIPYKISS-----PLIFKLISHRPLFKCAVLMFQK-- 142 (299)
T ss_dssp EC----CCSSCC-----------------------CCCSEEEEECCGGGHH-----HHHHHHHHCSSCCSEEEEEEEH--
T ss_pred EEEECchhhCCc-----------------------ccCCEEEEcCCccccc-----HHHHHHHhcCCccceeeehHHH--
Confidence 888888876431 3699999999976432 11111100 000001111232
Q ss_pred HHHHHhhccCCCEEEEEcCCC
Q 004787 218 AMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSl 238 (730)
..|.++++++|...|+|||.
T Consensus 143 -e~a~rlla~~G~~~y~~ls~ 162 (299)
T 2h1r_A 143 -EFAERMLANVGDSNYSRLTI 162 (299)
T ss_dssp -HHHHHHTCCTTSTTCCHHHH
T ss_pred -HHHHHHhcCCCCcchhHHHH
Confidence 44677899999999998875
No 92
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.93 E-value=2.8e-09 Score=108.56 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=87.5
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc---CCCc---------------
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM---CTAN--------------- 138 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl---g~~n--------------- 138 (730)
.++.+|||+|||+|..+..++..+.. +...|+|+|+|+..+..++.++.+. +..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~-------~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRR-------SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 122 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGG-------GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhcc-------CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence 46789999999999999999887421 2478999999999999999888765 4322
Q ss_pred -----------eE-------------EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc
Q 004787 139 -----------LI-------------VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 139 -----------v~-------------vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
+. +..+|........ .......||.|+|++|+.....+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~----------------~~~~~~~fD~Iv~npp~~~~~~~~~ 186 (250)
T 1o9g_A 123 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALS----------------AVLAGSAPDVVLTDLPYGERTHWEG 186 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH----------------HHHTTCCCSEEEEECCGGGSSSSSS
T ss_pred cchhhhhhhhhhhhhccccccccccceeecccccccccc----------------cccCCCCceEEEeCCCeeccccccc
Confidence 34 6666654311000 0001247999999999654332111
Q ss_pred ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 195 ~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
......+..++.++.++|+|||+|+++.++.
T Consensus 187 -------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 217 (250)
T 1o9g_A 187 -------------QVPGQPVAGLLRSLASALPAHAVIAVTDRSR 217 (250)
T ss_dssp -------------CCCHHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred -------------cccccHHHHHHHHHHHhcCCCcEEEEeCcch
Confidence 1223566789999999999999999976664
No 93
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.93 E-value=1.7e-09 Score=111.09 Aligned_cols=147 Identities=14% Similarity=0.190 Sum_probs=102.4
Q ss_pred hhhHHHHHHHhhcccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 41 NQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 41 ~~~l~~~~~~l~~~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
.+.+..+.++-. +...+....+.....+...++...++.+|||+|||+|..|..+++.+.. .+.|+++|++
T Consensus 43 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~--------~~~v~~iD~s 113 (247)
T 1sui_A 43 HEAMKELREVTA-KHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPE--------DGKILAMDIN 113 (247)
T ss_dssp TTHHHHHHHHHH-TSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCT--------TCEEEEEESC
T ss_pred CHHHHHHHHHHH-hcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCC--------CCEEEEEECC
Confidence 345566665532 1222334444444444445556667889999999999999999998642 5899999999
Q ss_pred HHHHHHHHHHHHHcCC-CceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhh
Q 004787 121 VQRCNLLIHQTKRMCT-ANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDI 198 (730)
Q Consensus 121 ~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~ 198 (730)
+.++..+++++++.+. .++.+..+|+..+ +.+. ........||.|++|+++.
T Consensus 114 ~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~---------------~~~~~~~~fD~V~~d~~~~----------- 167 (247)
T 1sui_A 114 KENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI---------------KDEKNHGSYDFIFVDADKD----------- 167 (247)
T ss_dssp CHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH---------------HSGGGTTCBSEEEECSCST-----------
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHH---------------hccCCCCCEEEEEEcCchH-----------
Confidence 9999999999999987 4688888887653 1110 0000125799999987521
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 199 WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 199 ~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....++..++++|||||+||+..+
T Consensus 168 --------------~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 168 --------------NYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp --------------THHHHHHHHHHHBCTTCCEEEECT
T ss_pred --------------HHHHHHHHHHHhCCCCeEEEEecC
Confidence 124568888999999999998754
No 94
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.92 E-value=3.8e-09 Score=114.93 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=99.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~ 154 (730)
+.++.+|||+|||+|..+..++.+. +.+.|+|+|+|+..+..++.|+++.|. .++.+...|+..++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~---------~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--- 282 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRR---------YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--- 282 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTT---------CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG---
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc---
Confidence 6789999999999999999987752 235899999999999999999999998 578999999887542
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++|||..- ..+....+..++.+++..+.++| ||+++|.
T Consensus 283 ------------------~~~~fD~Ii~npPyg~--------------r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i 328 (373)
T 3tm4_A 283 ------------------YVDSVDFAISNLPYGL--------------KIGKKSMIPDLYMKFFNELAKVL--EKRGVFI 328 (373)
T ss_dssp ------------------TCSCEEEEEEECCCC--------------------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred ------------------ccCCcCEEEECCCCCc--------------ccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 1257999999999521 01122346677888999999988 7999999
Q ss_pred cCCCCCCCcHHHHHHHHHHCC
Q 004787 235 TCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~ 255 (730)
||+ ...+...+.+.|
T Consensus 329 ~~~------~~~~~~~~~~~G 343 (373)
T 3tm4_A 329 TTE------KKAIEEAIAENG 343 (373)
T ss_dssp ESC------HHHHHHHHHHTT
T ss_pred ECC------HHHHHHHHHHcC
Confidence 883 455566777665
No 95
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.92 E-value=2.9e-09 Score=103.39 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=85.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-ecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT-NHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt-~~Da~~fp~~~~ 154 (730)
++++.+|||+|||||..+..+++.++........+.+.|+|+|+++.+ ...++.+. ..|....+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~- 87 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQ- 87 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHH-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHH-
Confidence 468999999999999999999988642100011123899999999842 23456666 55544321000
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
..........||.|++|.++...|... .+ ......++..++..+.++|||||++|.+
T Consensus 88 ------------~~~~~~~~~~fD~V~~~~~~~~~~~~~--~~---------~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 88 ------------RILEVLPGRRADVILSDMAPNATGFRD--LD---------HDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp ------------HHHHHSGGGCEEEEEECCCCCCCSCHH--HH---------HHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------HHHHhcCCCCCcEEEeCCCCCCCCCcc--cC---------HHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 000001125799999998655544310 01 0122345578999999999999999998
Q ss_pred cCCCCCCCcHHHHHHHHHH
Q 004787 235 TCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~ 253 (730)
++.- ++...+...++.
T Consensus 145 ~~~~---~~~~~~~~~l~~ 160 (196)
T 2nyu_A 145 TWAG---SQSRRLQRRLTE 160 (196)
T ss_dssp ECCS---GGGHHHHHHHHH
T ss_pred ecCC---ccHHHHHHHHHH
Confidence 7644 333344455554
No 96
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.92 E-value=2.2e-09 Score=102.94 Aligned_cols=111 Identities=15% Similarity=0.054 Sum_probs=83.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~ 154 (730)
..++.+|||+|||+|..+..++.. +.+.|+|+|+++..+..++.+++..+.. ++.+...|+..+..
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--- 95 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR----------GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID--- 95 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT----------TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH---
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH---
Confidence 457889999999999999988764 2469999999999999999999988874 68888888765311
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH--HhhccCCCEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG--ISLLKVGGRIV 232 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA--l~lLKpGGrLV 232 (730)
.....||.|++|+|+.. + . ...++... .++|+|||+++
T Consensus 96 -----------------~~~~~fD~i~~~~~~~~-~-------~---------------~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 96 -----------------CLTGRFDLVFLDPPYAK-E-------T---------------IVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp -----------------HBCSCEEEEEECCSSHH-H-------H---------------HHHHHHHHHHTTCEEEEEEEE
T ss_pred -----------------hhcCCCCEEEECCCCCc-c-------h---------------HHHHHHHHHhCCCcCCCcEEE
Confidence 01246999999988421 0 0 11223333 48999999999
Q ss_pred EEcCCCC
Q 004787 233 YSTCSMN 239 (730)
Q Consensus 233 YSTCSl~ 239 (730)
.++++-.
T Consensus 136 ~~~~~~~ 142 (177)
T 2esr_A 136 CETDKTV 142 (177)
T ss_dssp EEEETTC
T ss_pred EEECCcc
Confidence 9988763
No 97
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.92 E-value=7.1e-10 Score=113.13 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=97.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+...++.+|||+|||+|..|..|++.+..- .+.+.|+|+|+++.++..++ .+ ..++.+..+|+..+..+.
T Consensus 77 l~~~~~~~VLDiG~GtG~~t~~la~~~~~~-----~~~~~V~gvD~s~~~l~~a~----~~-~~~v~~~~gD~~~~~~l~ 146 (236)
T 2bm8_A 77 LWELRPRTIVELGVYNGGSLAWFRDLTKIM-----GIDCQVIGIDRDLSRCQIPA----SD-MENITLHQGDCSDLTTFE 146 (236)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHHHHHHT-----TCCCEEEEEESCCTTCCCCG----GG-CTTEEEEECCSSCSGGGG
T ss_pred HHhcCCCEEEEEeCCCCHHHHHHHHhhhhc-----CCCCEEEEEeCChHHHHHHh----cc-CCceEEEECcchhHHHHH
Confidence 444567899999999999999999874210 13589999999999877664 22 267889999887641100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh-hccCCCEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS-LLKVGGRIV 232 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~-lLKpGGrLV 232 (730)
......||.|++|..- . ....+|..+.+ +|||||+||
T Consensus 147 -----------------~~~~~~fD~I~~d~~~---------~----------------~~~~~l~~~~r~~LkpGG~lv 184 (236)
T 2bm8_A 147 -----------------HLREMAHPLIFIDNAH---------A----------------NTFNIMKWAVDHLLEEGDYFI 184 (236)
T ss_dssp -----------------GGSSSCSSEEEEESSC---------S----------------SHHHHHHHHHHHTCCTTCEEE
T ss_pred -----------------hhccCCCCEEEECCch---------H----------------hHHHHHHHHHHhhCCCCCEEE
Confidence 0011369999997640 0 11357888886 999999999
Q ss_pred EEc-CCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 233 YST-CSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 233 YST-CSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
++. |.+.+..+...+..+++.++..++++.
T Consensus 185 ~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~ 215 (236)
T 2bm8_A 185 IEDMIPYWYRYAPQLFSEYLGAFRDVLSMDM 215 (236)
T ss_dssp ECSCHHHHHHHCHHHHHHHHHTTTTTEEEET
T ss_pred EEeCcccccccCHHHHHHHHHhCcccEEEcc
Confidence 974 344455677789999998876787754
No 98
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.91 E-value=3.1e-09 Score=106.02 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHF 149 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-----~~nv~vt~~Da~~f 149 (730)
.++++.+|||+|||+|..+..+++.++.. ..+.+.|+++|+++.++..+++++++.+ ..++.+...|+...
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVL----ENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTT----TCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhccc----CCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 57899999999999999999999875310 0135799999999999999999999887 57888888887652
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+.- .......||+|+++.++.. ++..+.++|||||
T Consensus 153 ~~~-----------------~~~~~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG 187 (227)
T 2pbf_A 153 NEE-----------------EKKELGLFDAIHVGASASE----------------------------LPEILVDLLAENG 187 (227)
T ss_dssp CHH-----------------HHHHHCCEEEEEECSBBSS----------------------------CCHHHHHHEEEEE
T ss_pred ccc-----------------cCccCCCcCEEEECCchHH----------------------------HHHHHHHhcCCCc
Confidence 100 0011257999999876531 2355678999999
Q ss_pred EEEEEc
Q 004787 230 RIVYST 235 (730)
Q Consensus 230 rLVYST 235 (730)
+||.++
T Consensus 188 ~lv~~~ 193 (227)
T 2pbf_A 188 KLIIPI 193 (227)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999864
No 99
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.91 E-value=6.2e-09 Score=103.14 Aligned_cols=144 Identities=10% Similarity=-0.003 Sum_probs=99.0
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEecccccC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-----NLIVTNHEAQHF 149 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-----nv~vt~~Da~~f 149 (730)
...++.+|||+|||+|..+..+++.. +...|+++|+++..+..++.+++..+.. ++.+...|+...
T Consensus 26 ~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 26 KQSNARRVIDLGCGQGNLLKILLKDS---------FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHTTCCEEEEETCTTCHHHHHHHHCT---------TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHhhC---------CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 34678899999999999999987742 2469999999999999999998777665 688888886442
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+ .....||.|++.- ++..-+ .....++|..+.++|||||
T Consensus 97 ~---------------------~~~~~fD~v~~~~------~l~~~~--------------~~~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 97 D---------------------KRFHGYDAATVIE------VIEHLD--------------LSRLGAFERVLFEFAQPKI 135 (217)
T ss_dssp C---------------------GGGCSCSEEEEES------CGGGCC--------------HHHHHHHHHHHHTTTCCSE
T ss_pred c---------------------ccCCCcCEEeeHH------HHHcCC--------------HHHHHHHHHHHHHHcCCCE
Confidence 2 1126799999732 121111 1123578999999999999
Q ss_pred EEEEEcCCC----------------------CCCCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004787 230 RIVYSTCSM----------------------NPVENEAVVAEILRKCEGSVELVDVSNEVP 268 (730)
Q Consensus 230 rLVYSTCSl----------------------~p~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (730)
.++.+.+.- ++.|=..-+..+++++|-.++...+...-|
T Consensus 136 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~~~ 196 (217)
T 3jwh_A 136 VIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEADP 196 (217)
T ss_dssp EEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCCCS
T ss_pred EEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCccC
Confidence 888776641 112222333377788876666665554433
No 100
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.90 E-value=7.4e-09 Score=113.08 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=92.4
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEecc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA---NLIVTNHE 145 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~---nv~vt~~D 145 (730)
+....+...++.+|||+|||+|..+..++... |...|+++|+++.++..++.+++.++.. ++.+...|
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~---------p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D 283 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN 283 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECS
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHC---------CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEech
Confidence 33445666778999999999999999998863 3579999999999999999999998865 46677777
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
+... .....||.|++|+|......+. . ....+++..+.++|
T Consensus 284 ~~~~----------------------~~~~~fD~Ii~nppfh~~~~~~-----------~------~~~~~~l~~~~~~L 324 (375)
T 4dcm_A 284 ALSG----------------------VEPFRFNAVLCNPPFHQQHALT-----------D------NVAWEMFHHARRCL 324 (375)
T ss_dssp TTTT----------------------CCTTCEEEEEECCCC------------------C------CHHHHHHHHHHHHE
T ss_pred hhcc----------------------CCCCCeeEEEECCCcccCcccC-----------H------HHHHHHHHHHHHhC
Confidence 6541 1125799999999954311110 0 12236899999999
Q ss_pred cCCCEEEEEcCCCCCC
Q 004787 226 KVGGRIVYSTCSMNPV 241 (730)
Q Consensus 226 KpGGrLVYSTCSl~p~ 241 (730)
||||+++.++-+..+.
T Consensus 325 kpgG~l~iv~n~~~~~ 340 (375)
T 4dcm_A 325 KINGELYIVANRHLDY 340 (375)
T ss_dssp EEEEEEEEEEETTSCH
T ss_pred CCCcEEEEEEECCcCH
Confidence 9999999987665443
No 101
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.90 E-value=9.6e-09 Score=114.03 Aligned_cols=88 Identities=22% Similarity=0.180 Sum_probs=72.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+++.++.+|||+|||+|..+..|+.. .+.|+|+|+++..+..+++|+++++..++.+...|+..+..-
T Consensus 282 l~~~~~~~VLDlgcG~G~~~~~la~~-----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~- 349 (433)
T 1uwv_A 282 LDVQPEDRVLDLFCGMGNFTLPLATQ-----------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK- 349 (433)
T ss_dssp HTCCTTCEEEEESCTTTTTHHHHHTT-----------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-
T ss_pred hcCCCCCEEEECCCCCCHHHHHHHhh-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-
Confidence 46678899999999999999998764 368999999999999999999999988999999998763210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
.......||.|++|||++|.
T Consensus 350 ----------------~~~~~~~fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 350 ----------------QPWAKNGFDKVLLDPARAGA 369 (433)
T ss_dssp ----------------SGGGTTCCSEEEECCCTTCC
T ss_pred ----------------hhhhcCCCCEEEECCCCccH
Confidence 00112579999999997664
No 102
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.90 E-value=3.1e-09 Score=99.75 Aligned_cols=132 Identities=20% Similarity=0.101 Sum_probs=90.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..+++.++. .+.|+++|+++ .+. ..++.+...|+..++....
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~--------~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~- 79 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGG--------KGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKA- 79 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCT--------TCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHH-
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCC--------CCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhh-
Confidence 578899999999999999999987632 47999999998 432 2567777777665321000
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.+.......||.|++|+|+...+... . .......++..++..+.++|+|||+++.++
T Consensus 80 ------------~~~~~~~~~~D~i~~~~~~~~~~~~~--~---------~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 80 ------------LLERVGDSKVQVVMSDMAPNMSGTPA--V---------DIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp ------------HHHHHTTCCEEEEEECCCCCCCSCHH--H---------HHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------hhccCCCCceeEEEECCCccccCCCc--c---------chHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 00001235799999999987766410 0 011234456789999999999999999876
Q ss_pred CCCCCCCcHHHHHHHHHH
Q 004787 236 CSMNPVENEAVVAEILRK 253 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~ 253 (730)
... ++...+...++.
T Consensus 137 ~~~---~~~~~~~~~~~~ 151 (180)
T 1ej0_A 137 FQG---EGFDEYLREIRS 151 (180)
T ss_dssp ESS---TTHHHHHHHHHH
T ss_pred ecC---CcHHHHHHHHHH
Confidence 543 555566666665
No 103
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.89 E-value=3.7e-09 Score=101.45 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=83.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||+|||+|..+..++.. +...|+|+|+++..+..++.+++..+. .++.+...|+..+...
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--- 109 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR----------GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ--- 109 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH---
T ss_pred cCCCCEEEeCCccCHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH---
Confidence 57889999999999999987762 246899999999999999999999886 4788888887653110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.......||.|++|+|.. .+. .... .+.+ .+.++|+|||++++++
T Consensus 110 --------------~~~~~~~fD~i~~~~~~~-~~~------------------~~~~-~~~l-~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 110 --------------FYEEKLQFDLVLLDPPYA-KQE------------------IVSQ-LEKM-LERQLLTNEAVIVCET 154 (187)
T ss_dssp --------------HHHTTCCEEEEEECCCGG-GCC------------------HHHH-HHHH-HHTTCEEEEEEEEEEE
T ss_pred --------------HHhcCCCCCEEEECCCCC-chh------------------HHHH-HHHH-HHhcccCCCCEEEEEe
Confidence 001136799999998832 110 0011 1112 2478999999999998
Q ss_pred CCCCC
Q 004787 236 CSMNP 240 (730)
Q Consensus 236 CSl~p 240 (730)
|+-..
T Consensus 155 ~~~~~ 159 (187)
T 2fhp_A 155 DKTVK 159 (187)
T ss_dssp ETTCC
T ss_pred CCccc
Confidence 88643
No 104
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.89 E-value=1.8e-09 Score=117.94 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=104.9
Q ss_pred CcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 58 GNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 58 G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
|.++-.+......+.+++..++.+|||+|||+|+.+..+++.+.. ...|+|+|+++..+..+ .
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~--------~~~i~gvDi~~~~~~~a---------~ 81 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGT--------AYRFVGVEIDPKALDLP---------P 81 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCS--------CSEEEEEESCTTTCCCC---------T
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCC--------CCeEEEEECCHHHHHhC---------C
Confidence 444433333333334445556779999999999999999887532 46899999999987655 4
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc-----Chhhhhhccc--ccccch
Q 004787 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-----APDIWRKWNV--GLGNGL 210 (730)
Q Consensus 138 nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-----~pd~~~~w~~--~~~~~L 210 (730)
++.+.+.|...++. ...||.|+++||+...+...+ ..+....+.. ....+.
T Consensus 82 ~~~~~~~D~~~~~~----------------------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (421)
T 2ih2_A 82 WAEGILADFLLWEP----------------------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGK 139 (421)
T ss_dssp TEEEEESCGGGCCC----------------------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTT
T ss_pred CCcEEeCChhhcCc----------------------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCC
Confidence 67788887765321 157999999999988765321 1121111110 111122
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEcCC--CCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 211 HSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 211 ~~lQ~~IL~rAl~lLKpGGrLVYSTCS--l~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
..++..++.+++++|++||++++.+++ ++....+.+ .+.|.+.+. ..++.+
T Consensus 140 ~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~l-r~~l~~~~~-~~i~~l 192 (421)
T 2ih2_A 140 YNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALL-REFLAREGK-TSVYYL 192 (421)
T ss_dssp CCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHH-HHHHHHHSE-EEEEEE
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHH-HHHHHhcCC-eEEEEC
Confidence 456778999999999999999998876 333334454 454444432 455543
No 105
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.89 E-value=1e-08 Score=103.79 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=85.7
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+.+.++.+|||+|||+|..+..++... ...|+++|+++..+..++.++... .++.+...|+..+|.
T Consensus 50 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~- 116 (266)
T 3ujc_A 50 DIELNENSKVLDIGSGLGGGCMYINEKY----------GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF- 116 (266)
T ss_dssp TCCCCTTCEEEEETCTTSHHHHHHHHHH----------CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC-
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC-
Confidence 4567899999999999999999998875 258999999999999887765443 678888888876532
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++.. ++.+-+ ......+|..+.++|||||+++
T Consensus 117 --------------------~~~~fD~v~~~~------~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~ 156 (266)
T 3ujc_A 117 --------------------PENNFDLIYSRD------AILALS--------------LENKNKLFQKCYKWLKPTGTLL 156 (266)
T ss_dssp --------------------CTTCEEEEEEES------CGGGSC--------------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCcEEEEeHHH------HHHhcC--------------hHHHHHHHHHHHHHcCCCCEEE
Confidence 126799999732 111110 1234578999999999999999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
.++.+.
T Consensus 157 ~~~~~~ 162 (266)
T 3ujc_A 157 ITDYCA 162 (266)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 987543
No 106
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.88 E-value=2.7e-08 Score=102.74 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=98.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+.+|++|||+|||+|..++.|+..- +.+.|+|+|+++..+..++.|++++|+.+ +.+...|+.....
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~--- 86 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQ---------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE--- 86 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---
T ss_pred CCCCCEEEEECCccHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC---
Confidence 5689999999999999999987751 35799999999999999999999999865 8888888765211
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++ .|.| ..+-.+||..+...|+++|++|.+
T Consensus 87 ------------------~~~~~D~Ivi----agmG--------------------g~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 87 ------------------KKDAIDTIVI----AGMG--------------------GTLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp ------------------GGGCCCEEEE----EEEC--------------------HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred ------------------ccccccEEEE----eCCc--------------------hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1135999886 2333 134567999999999999999987
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
. ......|.+.|.+.| |.+++
T Consensus 125 ~-----~~~~~~lr~~L~~~G--f~i~~ 145 (244)
T 3gnl_A 125 P-----NIAAWQLREWSEQNN--WLITS 145 (244)
T ss_dssp E-----SSCHHHHHHHHHHHT--EEEEE
T ss_pred c-----CCChHHHHHHHHHCC--CEEEE
Confidence 5 247888899998876 55443
No 107
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.87 E-value=1.7e-08 Score=105.39 Aligned_cols=121 Identities=16% Similarity=0.061 Sum_probs=91.9
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp 150 (730)
..++++++.+|||+|||+|..+..+++..+ ..|+++|+++..+..++.+++..+.. ++.+...|+..+
T Consensus 66 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 134 (302)
T 3hem_A 66 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYD----------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134 (302)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-
T ss_pred HHcCCCCcCEEEEeeccCcHHHHHHHHhCC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-
Confidence 345778999999999999999999988752 58999999999999999999998876 788888887653
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
...||+|++. +++.+-|+.+ ... -......++..+.++|||||+
T Consensus 135 -----------------------~~~fD~v~~~------~~~~~~~d~~------~~~-~~~~~~~~l~~~~~~LkpgG~ 178 (302)
T 3hem_A 135 -----------------------DEPVDRIVSL------GAFEHFADGA------GDA-GFERYDTFFKKFYNLTPDDGR 178 (302)
T ss_dssp -----------------------CCCCSEEEEE------SCGGGTTCCS------SCC-CTTHHHHHHHHHHHSSCTTCE
T ss_pred -----------------------CCCccEEEEc------chHHhcCccc------ccc-chhHHHHHHHHHHHhcCCCcE
Confidence 1679999974 2232222211 000 012335789999999999999
Q ss_pred EEEEcCCCC
Q 004787 231 IVYSTCSMN 239 (730)
Q Consensus 231 LVYSTCSl~ 239 (730)
++.++.+..
T Consensus 179 l~i~~~~~~ 187 (302)
T 3hem_A 179 MLLHTITIP 187 (302)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 999887654
No 108
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.86 E-value=6.3e-09 Score=105.99 Aligned_cols=111 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
..+.+.++.+|||+|||+|..+..+++. .+.|+++|+++.++..++++++..+.+++.+...|+..+|.
T Consensus 31 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~ 99 (260)
T 1vl5_A 31 QIAALKGNEEVLDVATGGGHVANAFAPF-----------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 99 (260)
T ss_dssp HHHTCCSCCEEEEETCTTCHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred HHhCCCCCCEEEEEeCCCCHHHHHHHHh-----------CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence 3456789999999999999998888664 25899999999999999999998888889999988877541
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
....||.|++... +..-++ ...+|.++.++|||||+|
T Consensus 100 ---------------------~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r~LkpgG~l 136 (260)
T 1vl5_A 100 ---------------------TDERFHIVTCRIA------AHHFPN----------------PASFVSEAYRVLKKGGQL 136 (260)
T ss_dssp ---------------------CTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEE
T ss_pred ---------------------CCCCEEEEEEhhh------hHhcCC----------------HHHHHHHHHHHcCCCCEE
Confidence 1267999997321 111111 136789999999999999
Q ss_pred EEEcC
Q 004787 232 VYSTC 236 (730)
Q Consensus 232 VYSTC 236 (730)
+.++.
T Consensus 137 ~~~~~ 141 (260)
T 1vl5_A 137 LLVDN 141 (260)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98744
No 109
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.86 E-value=4.8e-09 Score=99.03 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=82.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. + ..|+|+|+++..+..++++++..+. ++.+.+.|+..+...
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~-~----------~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---- 103 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASE-G----------WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPE---- 103 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT-T----------CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHH----
T ss_pred cCCCeEEEeCCCcCHHHHHHHHC-C----------CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHh----
Confidence 36889999999999999988764 1 2399999999999999999998887 788888887652110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.......||.|++|+|.. +.. + .....+ .+ .++|+|||+++.+++
T Consensus 104 -------------~~~~~~~~D~i~~~~~~~--~~~---~---------------~~~~~~-~~-~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 104 -------------AKAQGERFTVAFMAPPYA--MDL---A---------------ALFGEL-LA-SGLVEAGGLYVLQHP 148 (171)
T ss_dssp -------------HHHTTCCEEEEEECCCTT--SCT---T---------------HHHHHH-HH-HTCEEEEEEEEEEEE
T ss_pred -------------hhccCCceEEEEECCCCc--hhH---H---------------HHHHHH-Hh-hcccCCCcEEEEEeC
Confidence 000123799999999865 210 1 111112 22 589999999999888
Q ss_pred CCCCCC
Q 004787 237 SMNPVE 242 (730)
Q Consensus 237 Sl~p~E 242 (730)
+.....
T Consensus 149 ~~~~~~ 154 (171)
T 1ws6_A 149 KDLYLP 154 (171)
T ss_dssp TTSCCT
T ss_pred CccCCc
Confidence 765443
No 110
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.85 E-value=2.1e-08 Score=100.16 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||+|||+|..+..+++.. |...|+++|+++..+..++.++...+ ++.+...|+..++.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~---- 106 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKY---------PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDF---- 106 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCC----
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCC----
Confidence 5678999999999999999998874 35799999999999999888765544 78888888876542
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
. ..||.|++... +..-++ .....+|.++.++|||||+++.++
T Consensus 107 -----------------~-~~fD~v~~~~~------l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 107 -----------------E-EKYDMVVSALS------IHHLED--------------EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp -----------------C-SCEEEEEEESC------GGGSCH--------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------C-CCceEEEEeCc------cccCCH--------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1 57999998432 211111 122468999999999999999987
Q ss_pred CCCC
Q 004787 236 CSMN 239 (730)
Q Consensus 236 CSl~ 239 (730)
....
T Consensus 149 ~~~~ 152 (234)
T 3dtn_A 149 LVHG 152 (234)
T ss_dssp ECBC
T ss_pred ecCC
Confidence 6653
No 111
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.85 E-value=2.5e-08 Score=100.31 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=86.9
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~f 149 (730)
...+++.++++|||+|||+|..+.+++.. .+.|+++|+++.++..++++++..+. .++.+...|+...
T Consensus 84 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 152 (248)
T 2yvl_A 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEV-----------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA 152 (248)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS
T ss_pred HHhcCCCCCCEEEEeCCCccHHHHHHHHh-----------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc
Confidence 34567889999999999999999999886 26899999999999999999998887 6788888776552
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
. .....||.|++|+| ++ ..++..+.++|+|||
T Consensus 153 ~---------------------~~~~~~D~v~~~~~---------~~------------------~~~l~~~~~~L~~gG 184 (248)
T 2yvl_A 153 E---------------------VPEGIFHAAFVDVR---------EP------------------WHYLEKVHKSLMEGA 184 (248)
T ss_dssp C---------------------CCTTCBSEEEECSS---------CG------------------GGGHHHHHHHBCTTC
T ss_pred c---------------------cCCCcccEEEECCc---------CH------------------HHHHHHHHHHcCCCC
Confidence 1 01257999999876 11 124677889999999
Q ss_pred EEEEEcCCC
Q 004787 230 RIVYSTCSM 238 (730)
Q Consensus 230 rLVYSTCSl 238 (730)
+++..+.+.
T Consensus 185 ~l~~~~~~~ 193 (248)
T 2yvl_A 185 PVGFLLPTA 193 (248)
T ss_dssp EEEEEESSH
T ss_pred EEEEEeCCH
Confidence 999987554
No 112
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=1.3e-08 Score=100.56 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=84.7
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
..+.+.++.+|||+|||+|..+..++...+ +.+.|+++|+++.++..+++++...+..++.+...|+....
T Consensus 71 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 141 (215)
T 2yxe_A 71 ELLDLKPGMKVLEIGTGCGYHAAVTAEIVG--------EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY- 141 (215)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC-
T ss_pred HhhCCCCCCEEEEECCCccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 345778999999999999999999998763 24799999999999999999999998888888888764311
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|+++.++.. . ...+.++|||||+|
T Consensus 142 --------------------~~~~~fD~v~~~~~~~~------~----------------------~~~~~~~L~pgG~l 173 (215)
T 2yxe_A 142 --------------------EPLAPYDRIYTTAAGPK------I----------------------PEPLIRQLKDGGKL 173 (215)
T ss_dssp --------------------GGGCCEEEEEESSBBSS------C----------------------CHHHHHTEEEEEEE
T ss_pred --------------------CCCCCeeEEEECCchHH------H----------------------HHHHHHHcCCCcEE
Confidence 01257999999654211 0 12567899999999
Q ss_pred EEEcCC
Q 004787 232 VYSTCS 237 (730)
Q Consensus 232 VYSTCS 237 (730)
+.++.+
T Consensus 174 v~~~~~ 179 (215)
T 2yxe_A 174 LMPVGR 179 (215)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 988643
No 113
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.84 E-value=1.4e-09 Score=115.63 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC----CHHHHHHHHHHHHHcCCCceEEEec-ccccCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL----DVQRCNLLIHQTKRMCTANLIVTNH-EAQHFP 150 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~----d~~Rl~~L~~nlkRlg~~nv~vt~~-Da~~fp 150 (730)
++||.+|||+|||||++|..+++. |.|+|+|+ +..++..+ ..++++.+++.+... |+..++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~------------~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~ 145 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL------------KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP 145 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS------------TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc------------CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC
Confidence 578999999999999999988764 46999998 44332111 012233356777766 655432
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
...||.|+||.+|+ .|.. ..+ +..+..+|..+.++|||||+
T Consensus 146 -----------------------~~~fD~V~sd~~~~-~g~~--~~d-------------~~~~l~~L~~~~~~LkpGG~ 186 (305)
T 2p41_A 146 -----------------------PERCDTLLCDIGES-SPNP--TVE-------------AGRTLRVLNLVENWLSNNTQ 186 (305)
T ss_dssp -----------------------CCCCSEEEECCCCC-CSSH--HHH-------------HHHHHHHHHHHHHHCCTTCE
T ss_pred -----------------------cCCCCEEEECCccc-cCcc--hhh-------------HHHHHHHHHHHHHHhCCCCE
Confidence 15799999999987 5531 000 11122578888899999998
Q ss_pred EEEEcCCCCCCC
Q 004787 231 IVYSTCSMNPVE 242 (730)
Q Consensus 231 LVYSTCSl~p~E 242 (730)
+|.. .+.+.+
T Consensus 187 ~v~k--v~~~~~ 196 (305)
T 2p41_A 187 FCVK--VLNPYM 196 (305)
T ss_dssp EEEE--ESCCCS
T ss_pred EEEE--eCCCCC
Confidence 8864 344433
No 114
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.84 E-value=1.3e-08 Score=104.65 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=94.5
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..++.. ...|+|+|+|+..+..+++++++.+.. +.+...|+...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-----------g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~------ 179 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-----------GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA------ 179 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH------
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-----------CCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc------
Confidence 478999999999999998887653 128999999999999999999998876 77776665431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.....||.|+++.+. .....++..+.++|+|||+++.|.
T Consensus 180 ----------------~~~~~fD~Vv~n~~~-------------------------~~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 180 ----------------LPFGPFDLLVANLYA-------------------------ELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ----------------GGGCCEEEEEEECCH-------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----------------CcCCCCCEEEECCcH-------------------------HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 112579999996541 112568899999999999999986
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 236 CSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
... +...-+.+++++.| ++++.+
T Consensus 219 ~~~---~~~~~v~~~l~~~G--f~~~~~ 241 (254)
T 2nxc_A 219 ILK---DRAPLVREAMAGAG--FRPLEE 241 (254)
T ss_dssp EEG---GGHHHHHHHHHHTT--CEEEEE
T ss_pred ecc---CCHHHHHHHHHHCC--CEEEEE
Confidence 544 45677788888876 555543
No 115
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.84 E-value=2e-08 Score=101.13 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+++.++.+|||+|||+|..+.+++...+ .+.|+|+|+++.++..++++++.. .++.+...|+......
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~- 137 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIAD---------KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEY- 137 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTT---------TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGG-
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcC---------CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccc-
Confidence 4567899999999999999999998753 479999999999999999887655 6788888887651100
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.... ..||.|++|++- ++ ....+|..+.++|||||+++.
T Consensus 138 ----------------~~~~-~~~D~v~~~~~~---------~~---------------~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 138 ----------------ANIV-EKVDVIYEDVAQ---------PN---------------QAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp ----------------TTTS-CCEEEEEECCCS---------TT---------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------cccC-ccEEEEEEecCC---------hh---------------HHHHHHHHHHHhCCCCcEEEE
Confidence 0011 579999987651 11 113468889999999999998
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
+
T Consensus 177 ~ 177 (230)
T 1fbn_A 177 A 177 (230)
T ss_dssp E
T ss_pred E
Confidence 6
No 116
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.84 E-value=3.7e-08 Score=100.66 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=87.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~ 151 (730)
.+.+.++.+|||+|||+|..+..+++.. ...|+++|+++..+..++++++..+.. ++.+...|+..+|.
T Consensus 56 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 56 LLDVRSGDRVLDVGCGIGKPAVRLATAR----------DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HSCCCTTCEEEEESCTTSHHHHHHHHHS----------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 4567889999999999999999998763 368999999999999999999888864 68888888776541
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
....||.|++.- ++.+.++ ...+|.++.++|||||++
T Consensus 126 ---------------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l 162 (273)
T 3bus_A 126 ---------------------EDASFDAVWALE------SLHHMPD----------------RGRALREMARVLRPGGTV 162 (273)
T ss_dssp ---------------------CTTCEEEEEEES------CTTTSSC----------------HHHHHHHHHTTEEEEEEE
T ss_pred ---------------------CCCCccEEEEec------hhhhCCC----------------HHHHHHHHHHHcCCCeEE
Confidence 126799999722 1211111 146889999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
+.++...
T Consensus 163 ~i~~~~~ 169 (273)
T 3bus_A 163 AIADFVL 169 (273)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 9987653
No 117
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.84 E-value=1.3e-08 Score=111.34 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=91.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. ...|+++|+|+..+..++++++.++.. +.+...|+..++.
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-----------g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~----- 294 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-----------GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALT----- 294 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-----------TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSC-----
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccc-----
Confidence 47889999999999999998875 258999999999999999999988865 6778888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++|+|+...+.. ......+++..+.++|||||+++.+++
T Consensus 295 ----------------~~~~fD~Ii~npp~~~~~~~-----------------~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 295 ----------------EEARFDIIVTNPPFHVGGAV-----------------ILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp ----------------TTCCEEEEEECCCCCTTCSS-----------------CCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----------------cCCCeEEEEECCchhhcccc-----------------cHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 12679999999997543321 123446789999999999999999988
Q ss_pred CCCC
Q 004787 237 SMNP 240 (730)
Q Consensus 237 Sl~p 240 (730)
...+
T Consensus 342 ~~l~ 345 (381)
T 3dmg_A 342 PFLK 345 (381)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7754
No 118
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.84 E-value=8.5e-09 Score=103.34 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEecccccC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHF 149 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-----~~nv~vt~~Da~~f 149 (730)
.++++++|||+|||+|..+..+++.++.. +..+.+.|+++|+++..+..+++++.+.+ ..++.+...|+...
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 157 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAK---GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG 157 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHS---CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccc---cCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC
Confidence 57899999999999999999999876520 00123699999999999999999998876 57888888887651
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
. .....||+|+++.++.. ++..+.++|||||
T Consensus 158 ~---------------------~~~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG 188 (227)
T 1r18_A 158 Y---------------------PPNAPYNAIHVGAAAPD----------------------------TPTELINQLASGG 188 (227)
T ss_dssp C---------------------GGGCSEEEEEECSCBSS----------------------------CCHHHHHTEEEEE
T ss_pred C---------------------CcCCCccEEEECCchHH----------------------------HHHHHHHHhcCCC
Confidence 0 01257999999876421 1245678999999
Q ss_pred EEEEEcC
Q 004787 230 RIVYSTC 236 (730)
Q Consensus 230 rLVYSTC 236 (730)
+||.++-
T Consensus 189 ~lvi~~~ 195 (227)
T 1r18_A 189 RLIVPVG 195 (227)
T ss_dssp EEEEEES
T ss_pred EEEEEEe
Confidence 9998754
No 119
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.83 E-value=5e-08 Score=99.22 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=98.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeccccc-CCCcccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQH-FPGCRAN 155 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~-fp~~~~~ 155 (730)
++.+|||+|||+|..+..++.... .+.|+|+|+++..+..+++++++.+..+ +.+.+.|+.. +... +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~- 133 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN---------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-L- 133 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH---------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT-S-
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhh-h-
Confidence 678999999999999999988753 3789999999999999999999998765 8898888765 2110 0
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCC-cccc--Chhh--h---hhccccc-----ccchHHHHHHHHHHHH
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG-TLRK--APDI--W---RKWNVGL-----GNGLHSLQVQIAMRGI 222 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG-tlrk--~pd~--~---~~w~~~~-----~~~L~~lQ~~IL~rAl 222 (730)
.......||.|++|||+...+ .+.. .++. + ..+-... ..+-..+...++..+.
T Consensus 134 --------------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~ 199 (254)
T 2h00_A 134 --------------KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL 199 (254)
T ss_dssp --------------TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH
T ss_pred --------------hcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH
Confidence 000014799999999998765 1110 0100 0 0000000 0012234456777788
Q ss_pred hhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC-cEEEEe
Q 004787 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG-SVELVD 262 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~-~velvd 262 (730)
.+++++|.++. .+....+...+.+.|++.|- .++..+
T Consensus 200 ~~l~~~g~~~~---~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 200 QLKKRLRWYSC---MLGKKCSLAPLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp HHGGGBSCEEE---EESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred hcccceEEEEE---CCCChhHHHHHHHHHHHcCCCceEEEE
Confidence 89999886653 33444565566778888763 344444
No 120
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.83 E-value=2.6e-08 Score=102.90 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=85.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~ 151 (730)
.+++.++.+|||+|||+|..+..+++..+ ..|+++|+++..+..+++++++.+. .++.+...|+..+|
T Consensus 59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 127 (287)
T 1kpg_A 59 KLGLQPGMTLLDVGCGWGATMMRAVEKYD----------VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 127 (287)
T ss_dssp TTTCCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HcCCCCcCEEEEECCcccHHHHHHHHHcC----------CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 35678899999999999999999986642 4899999999999999999888775 47888888775532
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
..||.|++. +++.+-++ .....+|.++.++|||||++
T Consensus 128 -----------------------~~fD~v~~~------~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l 164 (287)
T 1kpg_A 128 -----------------------EPVDRIVSI------GAFEHFGH--------------ERYDAFFSLAHRLLPADGVM 164 (287)
T ss_dssp -----------------------CCCSEEEEE------SCGGGTCT--------------TTHHHHHHHHHHHSCTTCEE
T ss_pred -----------------------CCeeEEEEe------CchhhcCh--------------HHHHHHHHHHHHhcCCCCEE
Confidence 569999973 12211110 11356789999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
+.++...
T Consensus 165 ~~~~~~~ 171 (287)
T 1kpg_A 165 LLHTITG 171 (287)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 9987654
No 121
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.83 E-value=1.9e-08 Score=99.62 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=97.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEecccccC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-----NLIVTNHEAQHF 149 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-----nv~vt~~Da~~f 149 (730)
...++.+|||+|||+|..+..+++.. +...|+++|+++..+..++.++...+.. ++.+...|+...
T Consensus 26 ~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 26 KSVNAKKVIDLGCGEGNLLSLLLKDK---------SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHTTCCEEEEETCTTCHHHHHHHTST---------TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred hhcCCCEEEEecCCCCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 34578899999999999998887642 2469999999999999999988766654 688888887443
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+ .....||.|++.- ++..-++ ....++|..+.++|||||
T Consensus 97 ~---------------------~~~~~fD~V~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 97 D---------------------KRFSGYDAATVIE------VIEHLDE--------------NRLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp C---------------------GGGTTCSEEEEES------CGGGCCH--------------HHHHHHHHHHHTTTCCSE
T ss_pred c---------------------cccCCCCEEEEHH------HHHhCCH--------------HHHHHHHHHHHHhhCCCE
Confidence 2 1126799999721 2211111 123568999999999999
Q ss_pred EEEEEcCCCC----------------------CCCcHHHHHHHHHHCCCcEEEEecCccCC
Q 004787 230 RIVYSTCSMN----------------------PVENEAVVAEILRKCEGSVELVDVSNEVP 268 (730)
Q Consensus 230 rLVYSTCSl~----------------------p~ENEaVV~~~L~~~~~~velvd~s~~lP 268 (730)
.++.+.++-. +.|=..-+..+++++|-.+++..+....|
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~ 196 (219)
T 3jwg_A 136 VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD 196 (219)
T ss_dssp EEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCT
T ss_pred EEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccc
Confidence 7776655421 11112223367777776666666555444
No 122
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.83 E-value=4.7e-08 Score=95.38 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=81.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++ +|||++||+|..+..++.. ...|+++|+++..+..++.++...+. ++.+...|+..++.
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---- 90 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-----------GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI---- 90 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-----------TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC----
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-----------CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC----
Confidence 4677 9999999999998887654 25899999999999999999888776 67888887766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++.. ..+ . ......+|..+.++|||||+++.++
T Consensus 91 -----------------~~~~fD~v~~~~-----~~~--~---------------~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 91 -----------------VADAWEGIVSIF-----CHL--P---------------SSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp -----------------CTTTCSEEEEEC-----CCC--C---------------HHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred -----------------CcCCccEEEEEh-----hcC--C---------------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 125799999721 111 0 1234678999999999999999987
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
.+.
T Consensus 132 ~~~ 134 (202)
T 2kw5_A 132 FAP 134 (202)
T ss_dssp ECT
T ss_pred ecc
Confidence 654
No 123
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.81 E-value=2.2e-08 Score=97.91 Aligned_cols=111 Identities=11% Similarity=0.100 Sum_probs=86.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~ 152 (730)
+.+.++ +|||+|||+|..+..+++. . ...|+++|+++..+..++.+++..+.. ++.+...|+..++.
T Consensus 40 ~~~~~~-~vLdiG~G~G~~~~~l~~~-~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~- 107 (219)
T 3dlc_A 40 FGITAG-TCIDIGSGPGALSIALAKQ-S---------DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI- 107 (219)
T ss_dssp HCCCEE-EEEEETCTTSHHHHHHHHH-S---------EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS-
T ss_pred cCCCCC-EEEEECCCCCHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC-
Confidence 455666 9999999999999999886 2 479999999999999999999998864 78889888876541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++... +..- .....+|.++.++|||||+++
T Consensus 108 --------------------~~~~~D~v~~~~~------l~~~----------------~~~~~~l~~~~~~L~pgG~l~ 145 (219)
T 3dlc_A 108 --------------------EDNYADLIVSRGS------VFFW----------------EDVATAFREIYRILKSGGKTY 145 (219)
T ss_dssp --------------------CTTCEEEEEEESC------GGGC----------------SCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CcccccEEEECch------Hhhc----------------cCHHHHHHHHHHhCCCCCEEE
Confidence 1267999998432 1111 112458899999999999999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
.++...
T Consensus 146 ~~~~~~ 151 (219)
T 3dlc_A 146 IGGGFG 151 (219)
T ss_dssp EEECCS
T ss_pred EEeccC
Confidence 986443
No 124
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.80 E-value=5.5e-08 Score=100.95 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=86.9
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~ 153 (730)
.+.++.+|||++||+|..+..+++..+ ..|+++|+++..+..++++++..+. .++.+...|+..+|.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 146 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG----------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC-- 146 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC----------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--
Confidence 678899999999999999999988752 4899999999999999999988887 468888888876542
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++.- ++.+-++ ...+|.++.++|||||+|+.
T Consensus 147 -------------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~ 185 (297)
T 2o57_A 147 -------------------EDNSYDFIWSQD------AFLHSPD----------------KLKVFQECARVLKPRGVMAI 185 (297)
T ss_dssp -------------------CTTCEEEEEEES------CGGGCSC----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCEeEEEecc------hhhhcCC----------------HHHHHHHHHHHcCCCeEEEE
Confidence 126799999731 1211111 25688999999999999999
Q ss_pred EcCC
Q 004787 234 STCS 237 (730)
Q Consensus 234 STCS 237 (730)
++..
T Consensus 186 ~~~~ 189 (297)
T 2o57_A 186 TDPM 189 (297)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8754
No 125
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.80 E-value=6.2e-09 Score=105.27 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=91.1
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQ 147 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~ 147 (730)
+...++.+.++.+|||+|||+|..+..++..+.. .+.|+++|+++.++..++.++++.+..+ +.+...|+.
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPE--------DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCT--------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 3344556678999999999999999999987532 4799999999999999999999988865 888888875
Q ss_pred cC-CCcccCCCCCCCCcccccccccccc--ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004787 148 HF-PGCRANKNFSSASDKGIESESNMGQ--LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (730)
Q Consensus 148 ~f-p~~~~~~~~~~~~~~~~~~~~~~~~--~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (730)
.+ +.+...... .... ..+.. ..||.|++|.. . + ....++..+.++
T Consensus 123 ~~~~~~~~~~~~------~~~~-~~f~~~~~~fD~I~~~~~------~---~----------------~~~~~l~~~~~~ 170 (239)
T 2hnk_A 123 ETLQVLIDSKSA------PSWA-SDFAFGPSSIDLFFLDAD------K---E----------------NYPNYYPLILKL 170 (239)
T ss_dssp HHHHHHHHCSSC------CGGG-TTTCCSTTCEEEEEECSC------G---G----------------GHHHHHHHHHHH
T ss_pred HHHHHHHhhccc------cccc-ccccCCCCCcCEEEEeCC------H---H----------------HHHHHHHHHHHH
Confidence 42 111000000 0000 01111 57999999742 0 0 012568889999
Q ss_pred ccCCCEEEEEcCCC
Q 004787 225 LKVGGRIVYSTCSM 238 (730)
Q Consensus 225 LKpGGrLVYSTCSl 238 (730)
|+|||+||..++.+
T Consensus 171 L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 171 LKPGGLLIADNVLW 184 (239)
T ss_dssp EEEEEEEEEECSSG
T ss_pred cCCCeEEEEEcccc
Confidence 99999999987655
No 126
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.80 E-value=4.4e-08 Score=97.06 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=84.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEecccccCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-----NLIVTNHEAQHFP 150 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-----nv~vt~~Da~~fp 150 (730)
+.++.+|||+|||+|..+..++.. ...|+++|+++..+..++.++...+.. ++.+...|+..++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-----------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS 96 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-----------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC
Confidence 468999999999999999988775 258999999999999999887766652 5677777776643
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
. ....||.|++.. ++...++ .....++|..+.++|||||+
T Consensus 97 ~---------------------~~~~~D~v~~~~------~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~ 136 (235)
T 3sm3_A 97 F---------------------HDSSFDFAVMQA------FLTSVPD-------------PKERSRIIKEVFRVLKPGAY 136 (235)
T ss_dssp S---------------------CTTCEEEEEEES------CGGGCCC-------------HHHHHHHHHHHHHHEEEEEE
T ss_pred C---------------------CCCceeEEEEcc------hhhcCCC-------------HHHHHHHHHHHHHHcCCCeE
Confidence 1 126799999842 2221111 11224689999999999999
Q ss_pred EEEEcCCCC
Q 004787 231 IVYSTCSMN 239 (730)
Q Consensus 231 LVYSTCSl~ 239 (730)
|+.++....
T Consensus 137 l~~~~~~~~ 145 (235)
T 3sm3_A 137 LYLVEFGQN 145 (235)
T ss_dssp EEEEEEBCC
T ss_pred EEEEECCcc
Confidence 999876553
No 127
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.80 E-value=2.2e-08 Score=98.79 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=97.3
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
++...++.+|||+|||+|..+..+++. ...|+|+|+++..+..+++++... .++.+...|+..++.
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~- 111 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPH-----------CKRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST- 111 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGG-----------EEEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC-
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC-
Confidence 456678899999999999999888654 368999999999999998877654 378888888876541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++. +++.+.++ .....++|.++.++|||||+++
T Consensus 112 ---------------------~~~fD~v~~~------~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~ 151 (216)
T 3ofk_A 112 ---------------------AELFDLIVVA------EVLYYLED-------------MTQMRTAIDNMVKMLAPGGHLV 151 (216)
T ss_dssp ---------------------SCCEEEEEEE------SCGGGSSS-------------HHHHHHHHHHHHHTEEEEEEEE
T ss_pred ---------------------CCCccEEEEc------cHHHhCCC-------------HHHHHHHHHHHHHHcCCCCEEE
Confidence 2679999983 22221111 0122468999999999999999
Q ss_pred EEcC------CCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 233 YSTC------SMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 233 YSTC------Sl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
++|. ++....+...+..++...-..++.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 188 (216)
T 3ofk_A 152 FGSARDATCRRWGHVAGAETVITILTEALTEVERVQC 188 (216)
T ss_dssp EEEECHHHHHHTTCSCCHHHHHHHHHHHSEEEEEEEE
T ss_pred EEecCCCcchhhhhhhhHHHHHHHHHhhccceEEEec
Confidence 9862 334456666666777654334444443
No 128
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.80 E-value=6.4e-09 Score=105.75 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=82.7
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..+|.+|||+|||.|..+..|++. ....|+++|+++..+..++++.++.+ .++.+...|+..+..
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~----------~~~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~---- 122 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEA----------PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---- 122 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTS----------CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----
T ss_pred ccCCCeEEEECCCccHHHHHHHHh----------CCcEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcc----
Confidence 368999999999999988887653 12579999999999999998877655 457777888765321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
......||.|+.|+..+.... .-......++.++.++|||||+++|.+
T Consensus 123 ---------------~~~~~~FD~i~~D~~~~~~~~-----------------~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 123 ---------------TLPDGHFDGILYDTYPLSEET-----------------WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ---------------GSCTTCEEEEEECCCCCBGGG-----------------TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---------------cccccCCceEEEeeeecccch-----------------hhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 122367999999975333221 111234568889999999999999853
No 129
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.79 E-value=6.5e-09 Score=105.18 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=89.5
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccC-
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF- 149 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~f- 149 (730)
.++...++.+|||+|||+|..|..++..+.. .+.|+++|+++.++..+++++++.+.. ++.+...|+..+
T Consensus 66 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l 137 (232)
T 3cbg_A 66 LLISLTGAKQVLEIGVFRGYSALAMALQLPP--------DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL 137 (232)
T ss_dssp HHHHHHTCCEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHhcCCCEEEEecCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3445567889999999999999999886532 579999999999999999999998875 588888876542
Q ss_pred CCcccCCCCCCCCcccccccccccc--ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQ--LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~--~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
+.+ .... ..||.|++|.++ + ....++..++++|+|
T Consensus 138 ~~l------------------~~~~~~~~fD~V~~d~~~---------~----------------~~~~~l~~~~~~Lkp 174 (232)
T 3cbg_A 138 EQL------------------TQGKPLPEFDLIFIDADK---------R----------------NYPRYYEIGLNLLRR 174 (232)
T ss_dssp HHH------------------HTSSSCCCEEEEEECSCG---------G----------------GHHHHHHHHHHTEEE
T ss_pred HHH------------------HhcCCCCCcCEEEECCCH---------H----------------HHHHHHHHHHHHcCC
Confidence 110 0011 579999998751 0 113478888999999
Q ss_pred CCEEEEEcCCCC
Q 004787 228 GGRIVYSTCSMN 239 (730)
Q Consensus 228 GGrLVYSTCSl~ 239 (730)
||+||+..+.+.
T Consensus 175 gG~lv~~~~~~~ 186 (232)
T 3cbg_A 175 GGLMVIDNVLWH 186 (232)
T ss_dssp EEEEEEECTTGG
T ss_pred CeEEEEeCCCcC
Confidence 999999888764
No 130
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.79 E-value=7.9e-08 Score=106.71 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=67.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..||.. ...|+|+|+++..+..+++|++.++.. +.+...|+..++.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-----------~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~---- 351 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-----------GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV---- 351 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC----
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc----
Confidence 578999999999999999998764 358999999999999999999998887 8888888876421
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
..||.|++|||.+|.
T Consensus 352 -------------------~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 352 -------------------KGFDTVIVDPPRAGL 366 (425)
T ss_dssp -------------------TTCSEEEECCCTTCS
T ss_pred -------------------cCCCEEEEcCCccch
Confidence 269999999997553
No 131
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.79 E-value=4.6e-09 Score=120.02 Aligned_cols=170 Identities=13% Similarity=0.012 Sum_probs=110.0
Q ss_pred ccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCC-CCC--------CCeEEEEEeCCHHHHHH
Q 004787 56 EIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNP-GAL--------PNGMVIANDLDVQRCNL 126 (730)
Q Consensus 56 ~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~-~~~--------p~G~VvAnD~d~~Rl~~ 126 (730)
..|.++--...+.+.+.++++.++.+|||.|||+|+..+++++.+...... ... ....|+|+|+++..+.+
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l 226 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 226 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence 356666555555566677888999999999999999999999887532100 000 01369999999999999
Q ss_pred HHHHHHHcCCCc-----eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhh
Q 004787 127 LIHQTKRMCTAN-----LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRK 201 (730)
Q Consensus 127 L~~nlkRlg~~n-----v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~ 201 (730)
++.|+...|..+ ..+.++|+...+ ......||.|+++||+++........ .
T Consensus 227 A~~nl~l~gi~~~~~~~~~I~~gDtL~~~--------------------~~~~~~fD~Vv~NPPf~~~~~~~~~~----~ 282 (541)
T 2ar0_A 227 ALMNCLLHDIEGNLDHGGAIRLGNTLGSD--------------------GENLPKAHIVATNPPFGSAAGTNITR----T 282 (541)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHH--------------------HHTSCCEEEEEECCCCTTCSSCCCCS----C
T ss_pred HHHHHHHhCCCccccccCCeEeCCCcccc--------------------cccccCCeEEEECCCcccccchhhHh----h
Confidence 999988777654 556666654311 01125799999999999865432100 1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC--CCCCCcHHHHHHHHHH
Q 004787 202 WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRK 253 (730)
Q Consensus 202 w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS--l~p~ENEaVV~~~L~~ 253 (730)
+.. .-...+...+.+++++||+||++++.+.. +.....+..+.+.|.+
T Consensus 283 ~~~----~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~ 332 (541)
T 2ar0_A 283 FVH----PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 332 (541)
T ss_dssp CSS----CCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred cCC----CCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence 111 11223457899999999999999987542 2222234445444433
No 132
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.79 E-value=4.6e-09 Score=104.79 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=89.5
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~f 149 (730)
..++...++.+|||+|||+|..+..+++.+.. .+.|+++|+++.++..+++++++.+. .++.+...|+..+
T Consensus 62 ~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~--------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 133 (229)
T 2avd_A 62 ANLARLIQAKKALDLGTFTGYSALALALALPA--------DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 133 (229)
T ss_dssp HHHHHHTTCCEEEEECCTTSHHHHHHHTTSCT--------TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHhcCCCEEEEEcCCccHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH
Confidence 34455678899999999999999999876532 57999999999999999999999887 5788888887542
Q ss_pred C-CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 150 P-GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 150 p-~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
. .+. .......||.|++|++. ..+..++..+.++|+||
T Consensus 134 ~~~~~----------------~~~~~~~~D~v~~d~~~-------------------------~~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 134 LDELL----------------AAGEAGTFDVAVVDADK-------------------------ENCSAYYERCLQLLRPG 172 (229)
T ss_dssp HHHHH----------------HTTCTTCEEEEEECSCS-------------------------TTHHHHHHHHHHHEEEE
T ss_pred HHHHH----------------hcCCCCCccEEEECCCH-------------------------HHHHHHHHHHHHHcCCC
Confidence 1 100 00001579999999861 01245788899999999
Q ss_pred CEEEEEcCCC
Q 004787 229 GRIVYSTCSM 238 (730)
Q Consensus 229 GrLVYSTCSl 238 (730)
|+||...+.+
T Consensus 173 G~lv~~~~~~ 182 (229)
T 2avd_A 173 GILAVLRVLW 182 (229)
T ss_dssp EEEEEECCSG
T ss_pred eEEEEECCCc
Confidence 9999976553
No 133
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.79 E-value=5.2e-08 Score=98.58 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=80.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+...++.+|||+|||+|..+..+++.. ...|+++|+++..+..++.++. ..++.+...|+..++.
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~-- 104 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHG----------AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI-- 104 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTT----------CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcC----------CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--
Confidence 445588999999999999999887751 2389999999999988876544 5678888888876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++.- ++...+ ...++|.++.++|||||+|+.
T Consensus 105 -------------------~~~~fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~ 143 (253)
T 3g5l_A 105 -------------------EPDAYNVVLSSL------ALHYIA----------------SFDDICKKVYINLKSSGSFIF 143 (253)
T ss_dssp -------------------CTTCEEEEEEES------CGGGCS----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeEEEEEch------hhhhhh----------------hHHHHHHHHHHHcCCCcEEEE
Confidence 126799999832 221111 125688999999999999999
Q ss_pred EcCC
Q 004787 234 STCS 237 (730)
Q Consensus 234 STCS 237 (730)
++.+
T Consensus 144 ~~~~ 147 (253)
T 3g5l_A 144 SVEH 147 (253)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8543
No 134
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.79 E-value=1.8e-08 Score=100.57 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=81.4
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
..+.+.++.+|||+|||+|..+..++.. .+.|+++|+++..+..+++++...+ ++.+...|+....
T Consensus 64 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~- 129 (231)
T 1vbf_A 64 DELDLHKGQKVLEIGTGIGYYTALIAEI-----------VDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGY- 129 (231)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCC-
T ss_pred HhcCCCCCCEEEEEcCCCCHHHHHHHHH-----------cCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccc-
Confidence 3457789999999999999999999876 2689999999999999999887776 7888888876511
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|+++.++... ...+.++|+|||++
T Consensus 130 --------------------~~~~~fD~v~~~~~~~~~----------------------------~~~~~~~L~pgG~l 161 (231)
T 1vbf_A 130 --------------------EEEKPYDRVVVWATAPTL----------------------------LCKPYEQLKEGGIM 161 (231)
T ss_dssp --------------------GGGCCEEEEEESSBBSSC----------------------------CHHHHHTEEEEEEE
T ss_pred --------------------ccCCCccEEEECCcHHHH----------------------------HHHHHHHcCCCcEE
Confidence 012579999997653210 12467799999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
++++.+-
T Consensus 162 ~~~~~~~ 168 (231)
T 1vbf_A 162 ILPIGVG 168 (231)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 9987643
No 135
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.79 E-value=2.7e-08 Score=96.20 Aligned_cols=109 Identities=16% Similarity=0.021 Sum_probs=83.8
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+++..++.+|||+|||+|..+..+++. ...|+++|+++..+..++++++..+.+++.+...|+..++.
T Consensus 27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~- 94 (199)
T 2xvm_A 27 AVKVVKPGKTLDLGCGNGRNSLYLAAN-----------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF- 94 (199)
T ss_dssp HTTTSCSCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-
T ss_pred HhhccCCCeEEEEcCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-
Confidence 345567889999999999999988775 25899999999999999999988888788888888776431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++... +... .+ .....+|..+.++|||||+++
T Consensus 95 ---------------------~~~~D~v~~~~~------l~~~-------~~-------~~~~~~l~~~~~~L~~gG~l~ 133 (199)
T 2xvm_A 95 ---------------------DRQYDFILSTVV------LMFL-------EA-------KTIPGLIANMQRCTKPGGYNL 133 (199)
T ss_dssp ---------------------CCCEEEEEEESC------GGGS-------CG-------GGHHHHHHHHHHTEEEEEEEE
T ss_pred ---------------------CCCceEEEEcch------hhhC-------CH-------HHHHHHHHHHHHhcCCCeEEE
Confidence 267999997432 1111 10 012568899999999999987
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
+.
T Consensus 134 ~~ 135 (199)
T 2xvm_A 134 IV 135 (199)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 136
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.78 E-value=2.5e-08 Score=99.94 Aligned_cols=130 Identities=14% Similarity=0.098 Sum_probs=93.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+|||+|||+|..+..++. +...|+++|+++..+..++.++...+ ..++.+...|+..++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~-----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------ 129 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS-----------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP------ 129 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB-----------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC------
T ss_pred CCCEEEeCCCCCHHHHHHHh-----------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC------
Confidence 35999999999999887754 25789999999999999998887643 3568888888876431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
...||.|++-. ++..-+ + .....+|.++.++|||||+|+..+.+
T Consensus 130 ----------------~~~fD~v~~~~------~l~~~~-------~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 130 ----------------TELFDLIFDYV------FFCAIE-------P-------EMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp ----------------SSCEEEEEEES------STTTSC-------G-------GGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ----------------CCCeeEEEECh------hhhcCC-------H-------HHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 14799999732 111111 0 12356789999999999999987665
Q ss_pred CCCC-------CcHHHHHHHHHHCCCcEEEEec
Q 004787 238 MNPV-------ENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 238 l~p~-------ENEaVV~~~L~~~~~~velvd~ 263 (730)
.... -..+-+..+|++.| ++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~ 204 (235)
T 3lcc_A 174 ITDHVGGPPYKVDVSTFEEVLVPIG--FKAVSV 204 (235)
T ss_dssp CSCCCSCSSCCCCHHHHHHHHGGGT--EEEEEE
T ss_pred ccccCCCCCccCCHHHHHHHHHHcC--CeEEEE
Confidence 4332 24677888888876 555554
No 137
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.78 E-value=1.4e-08 Score=102.32 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
..++++.++.+|||+|||+|..+..+++.. + +.|+++|+++..+..++.+++..+..++.+...|+.. +
T Consensus 84 ~~~l~~~~~~~vLdiG~G~G~~~~~la~~~---------~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~ 152 (235)
T 1jg1_A 84 LEIANLKPGMNILEVGTGSGWNAALISEIV---------K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-G 152 (235)
T ss_dssp HHHHTCCTTCCEEEECCTTSHHHHHHHHHH---------C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-C
T ss_pred HHhcCCCCCCEEEEEeCCcCHHHHHHHHHh---------C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-C
Confidence 344678899999999999999999998874 2 5799999999999999999999998888888887621 1
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
+ .....||+|+++.++.. +...+.++|+|||+
T Consensus 153 -~-------------------~~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~pgG~ 184 (235)
T 1jg1_A 153 -F-------------------PPKAPYDVIIVTAGAPK----------------------------IPEPLIEQLKIGGK 184 (235)
T ss_dssp -C-------------------GGGCCEEEEEECSBBSS----------------------------CCHHHHHTEEEEEE
T ss_pred -C-------------------CCCCCccEEEECCcHHH----------------------------HHHHHHHhcCCCcE
Confidence 0 01135999999754211 01245779999999
Q ss_pred EEEEcCC
Q 004787 231 IVYSTCS 237 (730)
Q Consensus 231 LVYSTCS 237 (730)
|+.++-.
T Consensus 185 lvi~~~~ 191 (235)
T 1jg1_A 185 LIIPVGS 191 (235)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 9987643
No 138
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.78 E-value=1.6e-09 Score=113.83 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=89.7
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF 149 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~f 149 (730)
+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++...+. .++.+...|+..+
T Consensus 21 ~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 21 IDKAALRPTDVVLEVGPGTGNMTVKLLEK-----------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHTCCCTTCEEEEECCTTSTTHHHHHHH-----------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHhcCCCCCCEEEEEcCcccHHHHHHHhh-----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 34567789999999999999999999886 36899999999999999998876665 5789999988764
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhc--ccccccchHHHHHHHHHHHHhhccC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW--NVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w--~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
+. ..||.|+++.|+....-+ ++.-. .+.....+.-+|.++..+ .+|+|
T Consensus 90 ~~-----------------------~~fD~vv~nlpy~~~~~~-----~~~~l~~~~~~~~~~~m~qkEva~r--~vlkP 139 (285)
T 1zq9_A 90 DL-----------------------PFFDTCVANLPYQISSPF-----VFKLLLHRPFFRCAILMFQREFALR--LVAKP 139 (285)
T ss_dssp CC-----------------------CCCSEEEEECCGGGHHHH-----HHHHHHCSSCCSEEEEEEEHHHHHH--HHCCT
T ss_pred cc-----------------------hhhcEEEEecCcccchHH-----HHHHHhcCcchhhhhhhhhHHHHHH--HhcCC
Confidence 31 368999999997653211 11100 011111222345555543 37899
Q ss_pred CCEEEEEcCCC
Q 004787 228 GGRIVYSTCSM 238 (730)
Q Consensus 228 GGrLVYSTCSl 238 (730)
||++ |+++|+
T Consensus 140 Gg~~-y~~lsv 149 (285)
T 1zq9_A 140 GDKL-YCRLSI 149 (285)
T ss_dssp TCTT-CSHHHH
T ss_pred CCcc-cchhhh
Confidence 9996 988886
No 139
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.78 E-value=6.6e-09 Score=104.75 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=82.7
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
++++.+|||+|||+|..+..++.. +...|+++|+++..+..+++++++.+ .++.+...|+..+..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~---- 122 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA----------PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---- 122 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS----------CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc----------CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----
Confidence 578999999999999999888542 13589999999999999999887666 578888888766410
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
......||.|++|.-. . . .+ .+. ......++.++.++|||||+|++..
T Consensus 123 ---------------~~~~~~fD~V~~d~~~--~-~---~~----~~~-------~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 123 ---------------TLPDGHFDGILYDTYP--L-S---EE----TWH-------THQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ---------------GSCTTCEEEEEECCCC--C-B---GG----GTT-------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---------------ccCCCceEEEEECCcc--c-c---hh----hhh-------hhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 1123679999997211 0 0 00 000 1223467899999999999999875
Q ss_pred CC
Q 004787 236 CS 237 (730)
Q Consensus 236 CS 237 (730)
++
T Consensus 171 ~~ 172 (236)
T 1zx0_A 171 LT 172 (236)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 140
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.76 E-value=3.2e-08 Score=96.93 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=83.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..++... +.+.|+++|+++..+..+++++++.+..++.+...|+..++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------ 129 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR---------PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS------ 129 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC------
T ss_pred CCCeEEEECCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc------
Confidence 58899999999999999998764 357999999999999999999999998888888888766431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
...||.|++..- . ....++..+.++|+|||+++.....
T Consensus 130 ----------------~~~~D~i~~~~~----------------------~----~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 130 ----------------EPPFDGVISRAF----------------------A----SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp ----------------CSCEEEEECSCS----------------------S----SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred ----------------cCCcCEEEEecc----------------------C----CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 157999997320 0 0246889999999999999987554
No 141
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.76 E-value=1.6e-08 Score=103.13 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=83.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH------cCCCceEEEeccccc-C
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR------MCTANLIVTNHEAQH-F 149 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR------lg~~nv~vt~~Da~~-f 149 (730)
.++.+|||+|||.|..+..||... |...|+|+|++..++..++.+++. .+..|+.+...|+.. +
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l 115 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLF---------PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHL 115 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGS---------TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhh
Confidence 567899999999999999987752 457899999999999999988765 356789999999875 2
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+.. .....||+|++..| +-|.+-... ... -.+..+|..+.++|||||
T Consensus 116 ~~~-------------------~~~~~~D~v~~~~~-----------dp~~k~~h~-krr--~~~~~~l~~~~~~LkpGG 162 (235)
T 3ckk_A 116 PNF-------------------FYKGQLTKMFFLFP-----------DPHFKRTKH-KWR--IISPTLLAEYAYVLRVGG 162 (235)
T ss_dssp HHH-------------------CCTTCEEEEEEESC-----------C--------------CCCHHHHHHHHHHEEEEE
T ss_pred hhh-------------------CCCcCeeEEEEeCC-----------Cchhhhhhh-hhh--hhhHHHHHHHHHHCCCCC
Confidence 210 12367999988554 222110000 000 123568999999999999
Q ss_pred EEEEEcCC
Q 004787 230 RIVYSTCS 237 (730)
Q Consensus 230 rLVYSTCS 237 (730)
+|+.+|+.
T Consensus 163 ~l~~~td~ 170 (235)
T 3ckk_A 163 LVYTITDV 170 (235)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 99998863
No 142
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.76 E-value=3.3e-08 Score=101.35 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=87.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||+|||+|..+..+++.. |.+.|+++|+++..+..++.++...+.+++.+...|+..++.
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 101 (276)
T 3mgg_A 33 TVYPPGAKVLEAGCGIGAQTVILAKNN---------PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF-- 101 (276)
T ss_dssp CCCCTTCEEEETTCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--
T ss_pred ccCCCCCeEEEecCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--
Confidence 345789999999999999999998873 357999999999999999999999998899999988876542
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++... +..-++ ...+|..+.++|||||+++.
T Consensus 102 -------------------~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~~ 140 (276)
T 3mgg_A 102 -------------------EDSSFDHIFVCFV------LEHLQS----------------PEEALKSLKKVLKPGGTITV 140 (276)
T ss_dssp -------------------CTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeeEEEEech------hhhcCC----------------HHHHHHHHHHHcCCCcEEEE
Confidence 1267999998331 111111 13678889999999999998
Q ss_pred Ec
Q 004787 234 ST 235 (730)
Q Consensus 234 ST 235 (730)
.+
T Consensus 141 ~~ 142 (276)
T 3mgg_A 141 IE 142 (276)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 143
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.76 E-value=1.1e-07 Score=93.21 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=83.3
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+..+.++.+|||+|||+|..+..++.. ...|+++|+++..+..++. .+..++.+...|+..+.
T Consensus 41 l~~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-- 103 (218)
T 3ou2_A 41 LRAGNIRGDVLELASGTGYWTRHLSGL-----------ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-- 103 (218)
T ss_dssp HTTTTSCSEEEEESCTTSHHHHHHHHH-----------SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--
T ss_pred HhcCCCCCeEEEECCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--
Confidence 334678889999999999999999876 2589999999999887766 56678889888876641
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++.. ++...++ .....+|..+.++|||||+++
T Consensus 104 --------------------~~~~~D~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~L~pgG~l~ 143 (218)
T 3ou2_A 104 --------------------PDRQWDAVFFAH------WLAHVPD--------------DRFEAFWESVRSAVAPGGVVE 143 (218)
T ss_dssp --------------------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCceeEEEEec------hhhcCCH--------------HHHHHHHHHHHHHcCCCeEEE
Confidence 126799999832 2221111 123678999999999999999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
+++.+.
T Consensus 144 ~~~~~~ 149 (218)
T 3ou2_A 144 FVDVTD 149 (218)
T ss_dssp EEEECC
T ss_pred EEeCCC
Confidence 998765
No 144
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.75 E-value=2.9e-08 Score=113.44 Aligned_cols=193 Identities=14% Similarity=0.109 Sum_probs=123.6
Q ss_pred hHHHHHHHhhc------ccccCcEEEccccccchhhccC----CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCe
Q 004787 43 TLERFHKFLKL------ENEIGNITRQEAVSMVPPLFLD----VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNG 112 (730)
Q Consensus 43 ~l~~~~~~l~~------~~~~G~i~~Qd~~Smlp~llLd----~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G 112 (730)
.+..+.+||.. ....|.++--..++.+.+.++. +.++.+|||.|||+|+..+.+++.+... +..
T Consensus 176 ~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~------~~~ 249 (542)
T 3lkd_A 176 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQP------QTV 249 (542)
T ss_dssp HHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCT------TTC
T ss_pred HHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhc------cCc
Confidence 34555555532 3456777665556666666665 6789999999999999999998887421 246
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCC--CceEEEecccccC--CCcccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 113 MVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHF--PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 113 ~VvAnD~d~~Rl~~L~~nlkRlg~--~nv~vt~~Da~~f--p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
.++|+|+++..+.+++.|+...|. .++.+.++|.... |. .....||.|+++||.++
T Consensus 250 ~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~--------------------~~~~~fD~IvaNPPf~~ 309 (542)
T 3lkd_A 250 VYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT--------------------QEPTNFDGVLMNPPYSA 309 (542)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC--------------------SSCCCBSEEEECCCTTC
T ss_pred eEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc--------------------cccccccEEEecCCcCC
Confidence 899999999999999999988887 5677888876543 21 11367999999999986
Q ss_pred CCccccC--hh-hhhhcccccccchHHHHHHHHHHHHhhcc-CCCEEEEEcCC--CCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 189 DGTLRKA--PD-IWRKWNVGLGNGLHSLQVQIAMRGISLLK-VGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 189 dGtlrk~--pd-~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK-pGGrLVYSTCS--l~p~ENEaVV~~~L~~~~~~velvd 262 (730)
....... .+ .|..+. ....-...+...+.+++++|+ +||++++.+-. +.-.-.+.-+.+.|-+...-..++.
T Consensus 310 ~~~~~~~~~~d~rf~~~G--~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~~II~ 387 (542)
T 3lkd_A 310 KWSASSGFMDDPRFSPFG--KLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIG 387 (542)
T ss_dssp CCCCCGGGGGSTTTGGGS--SCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccchhhhhhhhhhhhh--hcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCceeEEEE
Confidence 4321110 00 122111 011111223468899999999 99999776533 2222225666666655442223444
Q ss_pred c
Q 004787 263 V 263 (730)
Q Consensus 263 ~ 263 (730)
+
T Consensus 388 L 388 (542)
T 3lkd_A 388 L 388 (542)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.75 E-value=2.4e-08 Score=98.96 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=81.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH------------cCCCceEE
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR------------MCTANLIV 141 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR------------lg~~nv~v 141 (730)
+.+.++.+|||++||+|..+..|++. ...|+|+|+|+..+..++++... ....++.+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~-----------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ-----------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH-----------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC-----------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 34568899999999999999999875 25899999999999998876532 12356788
Q ss_pred EecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHH
Q 004787 142 TNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRG 221 (730)
Q Consensus 142 t~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rA 221 (730)
..+|+..++.. ....||.|++-. .+...+ .....+.+.+.
T Consensus 87 ~~~d~~~l~~~--------------------~~~~fD~v~~~~------~l~~l~--------------~~~~~~~l~~~ 126 (203)
T 1pjz_A 87 WCGDFFALTAR--------------------DIGHCAAFYDRA------AMIALP--------------ADMRERYVQHL 126 (203)
T ss_dssp EEECCSSSTHH--------------------HHHSEEEEEEES------CGGGSC--------------HHHHHHHHHHH
T ss_pred EECccccCCcc--------------------cCCCEEEEEECc------chhhCC--------------HHHHHHHHHHH
Confidence 88887765420 015799999621 111111 12235678999
Q ss_pred HhhccCCCEEEEEcCCCC
Q 004787 222 ISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 222 l~lLKpGGrLVYSTCSl~ 239 (730)
.++|||||++++.|+.+.
T Consensus 127 ~r~LkpgG~~~l~~~~~~ 144 (203)
T 1pjz_A 127 EALMPQACSGLLITLEYD 144 (203)
T ss_dssp HHHSCSEEEEEEEEESSC
T ss_pred HHHcCCCcEEEEEEEecC
Confidence 999999999777776653
No 146
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.74 E-value=6.1e-08 Score=101.86 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=88.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~ 151 (730)
.+++.++.+|||+|||+|..+..+++..+ ..|+++|+++..+..++.+++..+.. ++.+...|+..+|
T Consensus 85 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 153 (318)
T 2fk8_A 85 KLDLKPGMTLLDIGCGWGTTMRRAVERFD----------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA- 153 (318)
T ss_dssp TSCCCTTCEEEEESCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-
T ss_pred hcCCCCcCEEEEEcccchHHHHHHHHHCC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-
Confidence 45678999999999999999999988752 48999999999999999999888764 5888887765532
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
..||.|++.- ++...+. .....+|..+.++|||||++
T Consensus 154 -----------------------~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 154 -----------------------EPVDRIVSIE------AFEHFGH--------------ENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp -----------------------CCCSEEEEES------CGGGTCG--------------GGHHHHHHHHHHHSCTTCEE
T ss_pred -----------------------CCcCEEEEeC------hHHhcCH--------------HHHHHHHHHHHHhcCCCcEE
Confidence 4699999732 2211110 12356889999999999999
Q ss_pred EEEcCCCCC
Q 004787 232 VYSTCSMNP 240 (730)
Q Consensus 232 VYSTCSl~p 240 (730)
+.++.....
T Consensus 191 ~~~~~~~~~ 199 (318)
T 2fk8_A 191 TVQSSVSYH 199 (318)
T ss_dssp EEEEEECCC
T ss_pred EEEEeccCC
Confidence 998877643
No 147
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.74 E-value=9.7e-08 Score=96.18 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=91.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+...++.+|||+|||+|..+..+++.. ...|+++|+++..+..+++++... .++.+...|+..++.
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~-- 154 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL----------YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL-- 154 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH----------CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh----------cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--
Confidence 345688999999999999999988764 257999999999999988876544 568888888766431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++.- ++..-++ .....+|.++.++|||||+++.
T Consensus 155 -------------------~~~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i 195 (254)
T 1xtp_A 155 -------------------PPNTYDLIVIQW------TAIYLTD--------------ADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp -------------------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeEEEEEcc------hhhhCCH--------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 125799999721 1211110 1246789999999999999999
Q ss_pred EcCCCCC------------CCcHHHHHHHHHHCC
Q 004787 234 STCSMNP------------VENEAVVAEILRKCE 255 (730)
Q Consensus 234 STCSl~p------------~ENEaVV~~~L~~~~ 255 (730)
++..... .-..+-+..+|++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 229 (254)
T 1xtp_A 196 KENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESG 229 (254)
T ss_dssp EEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHT
T ss_pred EecCCCcccceecccCCcccCCHHHHHHHHHHCC
Confidence 8743211 113456677777765
No 148
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.74 E-value=4.3e-08 Score=102.82 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=87.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~ 152 (730)
..+.++.+|||+|||+|..+..++... .+.+.|+++|+++..+..++.++.+.+..+ +.+...|+..++.
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 184 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSA--------CPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT- 184 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTT--------CTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-
Confidence 456889999999999999988875322 246799999999999999999998888764 8899998877541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
. ..||.|++..+ +...++ ...+.+++..+.++|||||+|+
T Consensus 185 --------------------~-~~fD~v~~~~~------~~~~~~-------------~~~~~~~l~~~~~~LkpgG~l~ 224 (305)
T 3ocj_A 185 --------------------R-EGYDLLTSNGL------NIYEPD-------------DARVTELYRRFWQALKPGGALV 224 (305)
T ss_dssp --------------------C-SCEEEEECCSS------GGGCCC-------------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------c-CCeEEEEECCh------hhhcCC-------------HHHHHHHHHHHHHhcCCCeEEE
Confidence 1 67999997432 211111 1223468999999999999999
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
.++.+
T Consensus 225 i~~~~ 229 (305)
T 3ocj_A 225 TSFLT 229 (305)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98744
No 149
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.72 E-value=1.5e-08 Score=107.24 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=81.2
Q ss_pred ccCCCCCCEEEeecC------CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEE-Eecc
Q 004787 73 FLDVQPDHFVLDMCA------APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIV-TNHE 145 (730)
Q Consensus 73 lLd~~pg~~VLDmCA------APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~v-t~~D 145 (730)
.+.+++|++|||+|| |||+ ..+++.+. +.+.|+|+|+++. +.++.+ ..+|
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~--------~~~~V~gvDis~~-------------v~~v~~~i~gD 114 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP--------TGTLLVDSDLNDF-------------VSDADSTLIGD 114 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSC--------TTCEEEEEESSCC-------------BCSSSEEEESC
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC--------CCCEEEEEECCCC-------------CCCCEEEEECc
Confidence 456789999999999 8898 44555543 2589999999988 135667 7788
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
+..++. ...||+|++|+++...|... ...... ..+..++|..+.++|
T Consensus 115 ~~~~~~----------------------~~~fD~Vvsn~~~~~~g~~~----------~d~~~~-~~l~~~~l~~a~r~L 161 (290)
T 2xyq_A 115 CATVHT----------------------ANKWDLIISDMYDPRTKHVT----------KENDSK-EGFFTYLCGFIKQKL 161 (290)
T ss_dssp GGGCCC----------------------SSCEEEEEECCCCCC---CC----------SCCCCC-CTHHHHHHHHHHHHE
T ss_pred cccCCc----------------------cCcccEEEEcCCcccccccc----------ccccch-HHHHHHHHHHHHHhc
Confidence 765431 15799999998766655321 111111 223468999999999
Q ss_pred cCCCEEEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 226 KVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 226 KpGGrLVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
||||+++..+-.. ...+ -+.++|+++
T Consensus 162 kpGG~~v~~~~~~--~~~~-~l~~~l~~~ 187 (290)
T 2xyq_A 162 ALGGSIAVKITEH--SWNA-DLYKLMGHF 187 (290)
T ss_dssp EEEEEEEEEECSS--SCCH-HHHHHHTTE
T ss_pred CCCcEEEEEEecc--CCHH-HHHHHHHHc
Confidence 9999999864332 2333 445566654
No 150
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.72 E-value=2.6e-08 Score=106.82 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=90.1
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
..+.+.++.+|||+|||+|..+..++... +...|+++|+++..+..+++++...+.. +.+...|+..++
T Consensus 190 ~~l~~~~~~~VLDlGcG~G~~~~~la~~~---------~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~- 258 (343)
T 2pjd_A 190 STLTPHTKGKVLDVGCGAGVLSVAFARHS---------PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV- 258 (343)
T ss_dssp HHSCTTCCSBCCBTTCTTSHHHHHHHHHC---------TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-
T ss_pred HhcCcCCCCeEEEecCccCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-
Confidence 34555678899999999999999998762 3468999999999999999999887765 455566554321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
...||.|++++|... |.. .......+++..+.++|||||++
T Consensus 259 ----------------------~~~fD~Iv~~~~~~~-g~~----------------~~~~~~~~~l~~~~~~LkpgG~l 299 (343)
T 2pjd_A 259 ----------------------KGRFDMIISNPPFHD-GMQ----------------TSLDAAQTLIRGAVRHLNSGGEL 299 (343)
T ss_dssp ----------------------CSCEEEEEECCCCCS-SSH----------------HHHHHHHHHHHHHGGGEEEEEEE
T ss_pred ----------------------cCCeeEEEECCCccc-Ccc----------------CCHHHHHHHHHHHHHhCCCCcEE
Confidence 257999999988431 210 01123467899999999999999
Q ss_pred EEEcCCCCC
Q 004787 232 VYSTCSMNP 240 (730)
Q Consensus 232 VYSTCSl~p 240 (730)
+..+.+..+
T Consensus 300 ~i~~~~~~~ 308 (343)
T 2pjd_A 300 RIVANAFLP 308 (343)
T ss_dssp EEEEETTSS
T ss_pred EEEEcCCCC
Confidence 999888765
No 151
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.72 E-value=6.5e-08 Score=95.85 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=80.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH----HcCCCceEEEeccccc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK----RMCTANLIVTNHEAQH 148 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk----Rlg~~nv~vt~~Da~~ 148 (730)
.+.++++.+|||+|||+|..+..+++.. |.+.|+|+|+++.++..+..+++ +.+.+++.+...|+..
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQN---------PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHHC---------TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 3457889999999999999999998863 46899999999998886554443 3566789999999887
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
+|.. ... |.|.+..+. ......+- .-+..+|..+.++||||
T Consensus 93 l~~~---------------------~~~-d~v~~~~~~---------~~~~~~~~--------~~~~~~l~~~~~~Lkpg 133 (218)
T 3mq2_A 93 LPPL---------------------SGV-GELHVLMPW---------GSLLRGVL--------GSSPEMLRGMAAVCRPG 133 (218)
T ss_dssp CCSC---------------------CCE-EEEEEESCC---------HHHHHHHH--------TSSSHHHHHHHHTEEEE
T ss_pred CCCC---------------------CCC-CEEEEEccc---------hhhhhhhh--------ccHHHHHHHHHHHcCCC
Confidence 6521 123 555543330 00000000 01246789999999999
Q ss_pred CEEEEEc
Q 004787 229 GRIVYST 235 (730)
Q Consensus 229 GrLVYST 235 (730)
|+++++.
T Consensus 134 G~l~~~~ 140 (218)
T 3mq2_A 134 ASFLVAL 140 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9999853
No 152
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.72 E-value=7.5e-08 Score=94.76 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=89.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
-.+.++.+|||+|||+|..+..++.. ...|+++|+++..+..++.++ ++.+...|+..++
T Consensus 39 ~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~--- 98 (211)
T 3e23_A 39 GELPAGAKILELGCGAGYQAEAMLAA-----------GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD--- 98 (211)
T ss_dssp TTSCTTCEEEESSCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC---
T ss_pred HhcCCCCcEEEECCCCCHHHHHHHHc-----------CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC---
Confidence 34568999999999999999988765 358999999999999888765 3344556655543
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++.. ++...+ ......+|..+.++|||||+++.
T Consensus 99 -------------------~~~~fD~v~~~~------~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~~ 139 (211)
T 3e23_A 99 -------------------AIDAYDAVWAHA------CLLHVP--------------RDELADVLKLIWRALKPGGLFYA 139 (211)
T ss_dssp -------------------CCSCEEEEEECS------CGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCcEEEEEecC------chhhcC--------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 126799999832 221111 12345789999999999999999
Q ss_pred EcCCCCCC-----------CcHHHHHHHHHHCC
Q 004787 234 STCSMNPV-----------ENEAVVAEILRKCE 255 (730)
Q Consensus 234 STCSl~p~-----------ENEaVV~~~L~~~~ 255 (730)
+++..... -+.+-+..+|++.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 172 (211)
T 3e23_A 140 SYKSGEGEGRDKLARYYNYPSEEWLRARYAEAG 172 (211)
T ss_dssp EEECCSSCEECTTSCEECCCCHHHHHHHHHHHC
T ss_pred EEcCCCcccccccchhccCCCHHHHHHHHHhCC
Confidence 87765432 25677788888776
No 153
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.71 E-value=6.7e-08 Score=97.35 Aligned_cols=130 Identities=16% Similarity=0.009 Sum_probs=93.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||+|||+|..+..+++.. ...|+++|+++..+..++.++...+..++.+...|+..++.
T Consensus 77 ~~~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---- 142 (241)
T 2ex4_A 77 KTGTSCALDCGAGIGRITKRLLLPL----------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP---- 142 (241)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT----------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC----
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC----
Confidence 3478999999999999988876542 35899999999999999988776654567788888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|+++- ++...++ .....+|..+.++|||||+|+.++
T Consensus 143 -----------------~~~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 143 -----------------EPDSYDVIWIQW------VIGHLTD--------------QHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp -----------------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCCEEEEEEcc------hhhhCCH--------------HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 125799999852 2211111 123578999999999999999976
Q ss_pred CCCCC-----------CCcHHHHHHHHHHCCC
Q 004787 236 CSMNP-----------VENEAVVAEILRKCEG 256 (730)
Q Consensus 236 CSl~p-----------~ENEaVV~~~L~~~~~ 256 (730)
..... .-+..-+..+|++.|-
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 217 (241)
T 2ex4_A 186 NMAQEGVILDDVDSSVCRDLDVVRRIICSAGL 217 (241)
T ss_dssp EEBSSSEEEETTTTEEEEBHHHHHHHHHHTTC
T ss_pred ccCCCcceecccCCcccCCHHHHHHHHHHcCC
Confidence 43221 1146677888888763
No 154
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.71 E-value=7.4e-08 Score=99.21 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~ 154 (730)
+.++.+|||+|||+|..+..++.. +.+.|+++|+++..+..+++++...+. .++.+...|+..++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-- 129 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA----------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-- 129 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH----------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC--
Confidence 468899999999999999887764 135899999999999999999887776 4688888887764310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
....||.|++... +.. . ..-......+|..+.++|||||+++.+
T Consensus 130 ------------------~~~~fD~v~~~~~------l~~------~------~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 130 ------------------LGKEFDVISSQFS------FHY------A------FSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp ------------------CSSCEEEEEEESC------GGG------G------GSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ------------------CCCCcCEEEECch------hhh------h------cCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1267999998521 100 0 001123467899999999999999999
Q ss_pred cCCC
Q 004787 235 TCSM 238 (730)
Q Consensus 235 TCSl 238 (730)
+++.
T Consensus 174 ~~~~ 177 (298)
T 1ri5_A 174 VPSR 177 (298)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8664
No 155
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.70 E-value=1.6e-08 Score=105.04 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=86.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
++.+.++.+|||+|||+|..+..+++.+.. ...|+|+|+++..+..++.++...+. ++.+...|+..++.
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~- 86 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPE--------GSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL- 86 (284)
T ss_dssp TSCCCSCCEEEEETCTTTHHHHHHTTTSCT--------TCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC-
T ss_pred HhccCCCCeEEEecCCCCHHHHHHHHhCCC--------CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc-
Confidence 345678999999999999999998776421 36899999999999999998877665 78888888876541
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++... +...++ ..++|.++.++|||||+++
T Consensus 87 ---------------------~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 87 ---------------------NDKYDIAICHAF------LLHMTT----------------PETMLQKMIHSVKKGGKII 123 (284)
T ss_dssp ---------------------SSCEEEEEEESC------GGGCSS----------------HHHHHHHHHHTEEEEEEEE
T ss_pred ---------------------CCCeeEEEECCh------hhcCCC----------------HHHHHHHHHHHcCCCCEEE
Confidence 157999998432 111111 1368999999999999999
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
...+.
T Consensus 124 ~~~~~ 128 (284)
T 3gu3_A 124 CFEPH 128 (284)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88766
No 156
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.69 E-value=9.8e-08 Score=94.35 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. ...|+++|+++..+..++++++..+ .++.+...|+..++.
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~----- 99 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDY-----------GFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF----- 99 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS-----
T ss_pred CCCCeEEEEeccCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC-----
Confidence 45889999999999999887764 1389999999999999999988777 678888888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++..+.. + +. .....++|.++.++|+|||+++.+++
T Consensus 100 ----------------~~~~~D~v~~~~~~~----~---------~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 100 ----------------EDKTFDYVIFIDSIV----H---------FE-------PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp ----------------CTTCEEEEEEESCGG----G---------CC-------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------CCCcEEEEEEcCchH----h---------CC-------HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 125799999864400 0 00 01235688999999999999999877
Q ss_pred CC
Q 004787 237 SM 238 (730)
Q Consensus 237 Sl 238 (730)
..
T Consensus 144 ~~ 145 (227)
T 1ve3_A 144 DL 145 (227)
T ss_dssp CH
T ss_pred Ch
Confidence 53
No 157
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.69 E-value=5.3e-08 Score=95.33 Aligned_cols=121 Identities=10% Similarity=0.012 Sum_probs=86.8
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+.++.+|||+|||+|..+..++.. + .+.|+|+|+++..+..+++++. ++.+...|+..++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~---------~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---- 108 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-G---------AESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---- 108 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-T---------BSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC----
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-C---------CCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC----
Confidence 4567899999999999999988764 1 3589999999999999888765 5777888776532
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
..||.|++|+|... +.. .....++.++++.+ |+ +|+
T Consensus 109 --------------------~~~D~v~~~~p~~~-------------~~~-------~~~~~~l~~~~~~~--g~--~~~ 144 (200)
T 1ne2_A 109 --------------------GKYDTWIMNPPFGS-------------VVK-------HSDRAFIDKAFETS--MW--IYS 144 (200)
T ss_dssp --------------------CCEEEEEECCCC---------------------------CHHHHHHHHHHE--EE--EEE
T ss_pred --------------------CCeeEEEECCCchh-------------ccC-------chhHHHHHHHHHhc--Cc--EEE
Confidence 46999999998321 110 11235688888887 33 777
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 235 TCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 235 TCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.|+- .....+..+++..+ .++.+.
T Consensus 145 ~~~~---~~~~~~~~~~~~~g-~~~~~~ 168 (200)
T 1ne2_A 145 IGNA---KARDFLRREFSARG-DVFREE 168 (200)
T ss_dssp EEEG---GGHHHHHHHHHHHE-EEEEEE
T ss_pred EEcC---chHHHHHHHHHHCC-CEEEEE
Confidence 7743 45667777888776 666654
No 158
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.68 E-value=1.4e-07 Score=94.36 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=79.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..+++. ...|+++|+++..+..++.+. ...++.+...|+..++.
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~---- 112 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-----------GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF---- 112 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS----
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC----
Confidence 468899999999999999988775 358999999999998876653 44678888888776541
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++.. ++.+.++ ..++|..+.++|+|||+++.++
T Consensus 113 -----------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 113 -----------------ENEQFEAIMAIN------SLEWTEE----------------PLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp -----------------CTTCEEEEEEES------CTTSSSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCCccEEEEcC------hHhhccC----------------HHHHHHHHHHHhCCCeEEEEEE
Confidence 126899999732 2211111 1367899999999999999988
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
...
T Consensus 154 ~~~ 156 (242)
T 3l8d_A 154 LGP 156 (242)
T ss_dssp ECT
T ss_pred cCC
Confidence 544
No 159
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.68 E-value=2.6e-08 Score=95.92 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=83.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. . .|+|+|+++..+.. ..++.+...|+....
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-----------~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~------ 74 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-----------N-TVVSTDLNIRALES---------HRGGNLVRADLLCSI------ 74 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-----------S-EEEEEESCHHHHHT---------CSSSCEEECSTTTTB------
T ss_pred CCCCeEEEeccCccHHHHHHHhc-----------C-cEEEEECCHHHHhc---------ccCCeEEECChhhhc------
Confidence 56789999999999998887653 2 99999999999876 356777777765511
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++++|........ . |.... . ...++.+.++.| |||+++.++.
T Consensus 75 ----------------~~~~fD~i~~n~~~~~~~~~~----~---~~~~~--~----~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 75 ----------------NQESVDVVVFNPPYVPDTDDP----I---IGGGY--L----GREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp ----------------CGGGCSEEEECCCCBTTCCCT----T---TBCCG--G----GCHHHHHHHHHC-CSSEEEEEEE
T ss_pred ----------------ccCCCCEEEECCCCccCCccc----c---ccCCc--c----hHHHHHHHHhhC-CCCEEEEEEe
Confidence 126799999998854322110 0 11110 0 123566777777 9999999876
Q ss_pred CCCCCCcHHHHHHHHHHCCC
Q 004787 237 SMNPVENEAVVAEILRKCEG 256 (730)
Q Consensus 237 Sl~p~ENEaVV~~~L~~~~~ 256 (730)
+. ....-+.++|++.+-
T Consensus 125 ~~---~~~~~l~~~l~~~gf 141 (170)
T 3q87_B 125 EA---NRPKEVLARLEERGY 141 (170)
T ss_dssp GG---GCHHHHHHHHHHTTC
T ss_pred cC---CCHHHHHHHHHHCCC
Confidence 65 566677888888763
No 160
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.68 E-value=6.4e-08 Score=95.57 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=80.5
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+.++.+|||+|||+|..+..+++. ...|+++|+++..+..++.++. .++.+...|+..++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~--- 103 (220)
T 3hnr_A 42 VNKSFGNVLEFGVGTGNLTNKLLLA-----------GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEV--- 103 (220)
T ss_dssp HHTCCSEEEEECCTTSHHHHHHHHT-----------TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCC---
T ss_pred hccCCCeEEEeCCCCCHHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCC---
Confidence 3458899999999999999988775 3689999999999988876543 567778888776431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
. ..||.|++.. ++..-++ ..+..+|.++.++|||||+++.+
T Consensus 104 ------------------~-~~fD~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 104 ------------------P-TSIDTIVSTY------AFHHLTD--------------DEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp ------------------C-SCCSEEEEES------CGGGSCH--------------HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ------------------C-CCeEEEEECc------chhcCCh--------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 6799999842 2221111 11245899999999999999998
Q ss_pred cCCCC
Q 004787 235 TCSMN 239 (730)
Q Consensus 235 TCSl~ 239 (730)
+..+.
T Consensus 145 ~~~~~ 149 (220)
T 3hnr_A 145 DTIFA 149 (220)
T ss_dssp EECBS
T ss_pred ecccc
Confidence 76553
No 161
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.67 E-value=1.4e-07 Score=92.17 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
+.+|||+|||+|..+..+++. ...|+|+|+++..+..++.+ .+++.+...|+..++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~------- 98 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-----------GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSD------- 98 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-----------TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGG-------
T ss_pred CCeEEEecCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCccccccc-------
Confidence 889999999999999988775 24799999999999887765 3467888888766431
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
....||.|++.. ++...+ . .....+|.++.++|||||+++.++...
T Consensus 99 --------------~~~~fD~v~~~~------~l~~~~-------~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 99 --------------SPKRWAGLLAWY------SLIHMG-------P-------GELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp --------------SCCCEEEEEEES------SSTTCC-------T-------TTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred --------------CCCCeEEEEehh------hHhcCC-------H-------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 126899999832 221111 0 113568899999999999999987654
Q ss_pred CC------------CCcHHHHHHHHHHCCCcEEEEec
Q 004787 239 NP------------VENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 239 ~p------------~ENEaVV~~~L~~~~~~velvd~ 263 (730)
.. .-...-+..+|++.| ++++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~ 179 (203)
T 3h2b_A 145 PSLEPMYHPVATAYRWPLPELAQALETAG--FQVTSS 179 (203)
T ss_dssp SSCEEECCSSSCEEECCHHHHHHHHHHTT--EEEEEE
T ss_pred CchhhhhchhhhhccCCHHHHHHHHHHCC--CcEEEE
Confidence 32 123666788888876 566554
No 162
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.67 E-value=6.6e-08 Score=97.73 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=80.7
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||+|||+|..+..++..+. .+.|+++|+++..+..++++ .+++.+...|+..++ .
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~---------~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~- 92 (259)
T 2p35_A 29 VPLERVLNGYDLGCGPGNSTELLTDRYG---------VNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-P- 92 (259)
T ss_dssp CCCSCCSSEEEETCTTTHHHHHHHHHHC---------TTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-C-
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHhCC---------CCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-c-
Confidence 3457889999999999999999988752 46899999999999888765 356788888876643 1
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++... +...+ -...+|..+.++|||||+|+.
T Consensus 93 --------------------~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~~ 130 (259)
T 2p35_A 93 --------------------AQKADLLYANAV------FQWVP----------------DHLAVLSQLMDQLESGGVLAV 130 (259)
T ss_dssp --------------------SSCEEEEEEESC------GGGST----------------THHHHHHHHGGGEEEEEEEEE
T ss_pred --------------------cCCcCEEEEeCc------hhhCC----------------CHHHHHHHHHHhcCCCeEEEE
Confidence 257999998321 11111 124688999999999999999
Q ss_pred EcCC
Q 004787 234 STCS 237 (730)
Q Consensus 234 STCS 237 (730)
++..
T Consensus 131 ~~~~ 134 (259)
T 2p35_A 131 QMPD 134 (259)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 8754
No 163
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.67 E-value=7.5e-08 Score=100.41 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=86.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEecccccCCCccc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--CTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl--g~~nv~vt~~Da~~fp~~~~ 154 (730)
.++.+|||+|||+|..+..+++.+. +...|+|+|+++..+..++.+++.. ...++.+...|+..++...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 105 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELK--------PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG- 105 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSS--------CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC--------CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc-
Confidence 5789999999999999999988652 2579999999999999999998886 3568999999988755210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
+.......||.|++... +. | + -..++|..+.++|||||+|+..
T Consensus 106 --------------~~~~~~~~fD~V~~~~~------l~--------~-------~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 106 --------------ADSVDKQKIDMITAVEC------AH--------W-------F--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp --------------TTTTTSSCEEEEEEESC------GG--------G-------S--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------------cccccCCCeeEEeHhhH------HH--------H-------h--CHHHHHHHHHHhcCCCcEEEEE
Confidence 00011267999998321 10 1 0 1246888999999999999986
Q ss_pred cCC
Q 004787 235 TCS 237 (730)
Q Consensus 235 TCS 237 (730)
+++
T Consensus 149 ~~~ 151 (299)
T 3g5t_A 149 GYA 151 (299)
T ss_dssp EEE
T ss_pred ecC
Confidence 554
No 164
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.67 E-value=7.2e-08 Score=99.64 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=83.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
++..++.+|||+|||+|..+..++.. ...|+|+|+++..+..++.++.+.+. ++.+...|+..++.
T Consensus 116 ~~~~~~~~vLD~GcG~G~~~~~l~~~-----------g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-- 181 (286)
T 3m70_A 116 AKIISPCKVLDLGCGQGRNSLYLSLL-----------GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-- 181 (286)
T ss_dssp HHHSCSCEEEEESCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC--
T ss_pred hhccCCCcEEEECCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc--
Confidence 33457899999999999999988775 25899999999999999999998887 88888888776431
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++..+. ..- .. .....+|.++.++|+|||+++.
T Consensus 182 --------------------~~~fD~i~~~~~~------~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 182 --------------------QENYDFIVSTVVF------MFL-------NR-------ERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp --------------------CSCEEEEEECSSG------GGS-------CG-------GGHHHHHHHHHHTEEEEEEEEE
T ss_pred --------------------cCCccEEEEccch------hhC-------CH-------HHHHHHHHHHHHhcCCCcEEEE
Confidence 2679999985531 110 00 1235689999999999999766
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
.
T Consensus 222 ~ 222 (286)
T 3m70_A 222 V 222 (286)
T ss_dssp E
T ss_pred E
Confidence 4
No 165
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.67 E-value=4.2e-08 Score=95.80 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=84.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. + ...|+++|+++..+..++.++.. .+++.+...|+..++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~-~---------~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~----- 103 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG-G---------FPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF----- 103 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHT-T---------CCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS-----
T ss_pred CCCCeEEEECCCCcHHHHHHHHc-C---------CCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC-----
Confidence 67899999999999999988764 1 13799999999999999887653 3577888888766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++..+....- ...+. .|... ........++|..+.++|||||+++.++.
T Consensus 104 ----------------~~~~fD~v~~~~~~~~~~--~~~~~---~~~~~--~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 104 ----------------PSASFDVVLEKGTLDALL--AGERD---PWTVS--SEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp ----------------CSSCEEEEEEESHHHHHT--TTCSC---TTSCC--HHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ----------------CCCcccEEEECcchhhhc--ccccc---ccccc--cchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 125799999865421100 00011 12211 01123457789999999999999999887
Q ss_pred CC
Q 004787 237 SM 238 (730)
Q Consensus 237 Sl 238 (730)
+.
T Consensus 161 ~~ 162 (215)
T 2pxx_A 161 AA 162 (215)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 166
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.66 E-value=2.8e-07 Score=88.22 Aligned_cols=128 Identities=14% Similarity=-0.002 Sum_probs=90.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..++.. ...|+++|+++..+..++.++ .++.+...|+..++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~---- 103 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-----------GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQI---- 103 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCC----
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-----------CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCC----
Confidence 468899999999999999988765 258999999999998887754 346777777665431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++.+++-. . .. ......+|..+.++|+|||+++.++
T Consensus 104 -----------------~~~~~D~i~~~~~~~~-----~-------~~-------~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 104 -----------------SETDFDLIVSAGNVMG-----F-------LA-------EDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp -----------------CCCCEEEEEECCCCGG-----G-------SC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCceeEEEECCcHHh-----h-------cC-------hHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1257999998643110 0 00 1223678999999999999999986
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 236 CSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 236 CSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.+... -...-+..+|++.| ++++.
T Consensus 148 ~~~~~-~~~~~~~~~l~~~G--f~~~~ 171 (195)
T 3cgg_A 148 GAGRG-WVFGDFLEVAERVG--LELEN 171 (195)
T ss_dssp ETTSS-CCHHHHHHHHHHHT--EEEEE
T ss_pred CCCCC-cCHHHHHHHHHHcC--CEEee
Confidence 65433 34555667777665 55544
No 167
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.66 E-value=4.7e-08 Score=95.59 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=81.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||+|||+|..++.++.. +...|+|+|+++..+..+++++...+ .++.+...|+..++.
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---- 85 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE----------DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF---- 85 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH----------TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS----
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh----------CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC----
Confidence 457889999999999986655433 13689999999999999999988766 457777777766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
....||.|++.. ++.+. . .....+++.++.++|||||+++.++
T Consensus 86 -----------------~~~~fD~v~~~~------~l~~~-------~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 86 -----------------KDESMSFVYSYG------TIFHM-------R-------KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp -----------------CTTCEEEEEECS------CGGGS-------C-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCceeEEEEcC------hHHhC-------C-------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 125799999732 11111 0 1234678999999999999999998
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
.+.
T Consensus 129 ~~~ 131 (209)
T 2p8j_A 129 LTT 131 (209)
T ss_dssp EET
T ss_pred ecc
Confidence 875
No 168
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.65 E-value=7.5e-08 Score=110.07 Aligned_cols=191 Identities=12% Similarity=0.052 Sum_probs=117.4
Q ss_pred HHHHHHHhhc------ccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCC-CCC-----CCC
Q 004787 44 LERFHKFLKL------ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTN-PGA-----LPN 111 (730)
Q Consensus 44 l~~~~~~l~~------~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~-~~~-----~p~ 111 (730)
+..+.++|.. ....|.++--..++.+.+.+++++++ +|||.|||+|+..+++++.+..... ... ...
T Consensus 205 lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~ 283 (544)
T 3khk_A 205 LGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQ 283 (544)
T ss_dssp HHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGG
T ss_pred HHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhh
Confidence 4445555432 34668877777777777778888887 9999999999999998877642100 000 003
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004787 112 GMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (730)
Q Consensus 112 G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (730)
..++|+|+++..+.+++.|+...|.. ++.+.++|....+. .....||.|+++||.+...
T Consensus 284 ~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~--------------------~~~~~fD~Iv~NPPf~~~~ 343 (544)
T 3khk_A 284 ISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ--------------------HPDLRADFVMTNPPFNMKD 343 (544)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS--------------------CTTCCEEEEEECCCSSCCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc--------------------cccccccEEEECCCcCCcc
Confidence 58999999999999999999877764 22223444332111 1236899999999998643
Q ss_pred ccccChhhhhhccccc-------ccchHHHHHHHHHHHHhhccCCCEEEEEcCC--CCCC-CcHHHHHHHHHHCC
Q 004787 191 TLRKAPDIWRKWNVGL-------GNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPV-ENEAVVAEILRKCE 255 (730)
Q Consensus 191 tlrk~pd~~~~w~~~~-------~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS--l~p~-ENEaVV~~~L~~~~ 255 (730)
........-.+|..+. ...-...+...+.+++++|++||++++.+-. +.-. -.+.-+.+.|-+.+
T Consensus 344 ~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~ 418 (544)
T 3khk_A 344 WWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQD 418 (544)
T ss_dssp CCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTT
T ss_pred ccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCC
Confidence 2111000001122110 1111123346889999999999998877532 3222 34666777666554
No 169
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.65 E-value=7.5e-08 Score=104.81 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=88.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----C---CCceEEEecc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----C---TANLIVTNHE 145 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----g---~~nv~vt~~D 145 (730)
+++.++.+|||+|||+|..+..++..++. .+.|+++|+++..+..++.+++++ | .+++.+...|
T Consensus 79 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d 150 (383)
T 4fsd_A 79 DGSLEGATVLDLGCGTGRDVYLASKLVGE--------HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGF 150 (383)
T ss_dssp GGGGTTCEEEEESCTTSHHHHHHHHHHTT--------TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESC
T ss_pred ccCCCCCEEEEecCccCHHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEcc
Confidence 44678999999999999999999988642 579999999999999999988765 3 2688999888
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
+..+.... +.......||.|++... +...++ ...+|.++.++|
T Consensus 151 ~~~l~~~~---------------~~~~~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r~L 193 (383)
T 4fsd_A 151 IENLATAE---------------PEGVPDSSVDIVISNCV------CNLSTN----------------KLALFKEIHRVL 193 (383)
T ss_dssp TTCGGGCB---------------SCCCCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHE
T ss_pred HHHhhhcc---------------cCCCCCCCEEEEEEccc------hhcCCC----------------HHHHHHHHHHHc
Confidence 87642110 00122368999998532 211111 246899999999
Q ss_pred cCCCEEEEEcCCC
Q 004787 226 KVGGRIVYSTCSM 238 (730)
Q Consensus 226 KpGGrLVYSTCSl 238 (730)
||||+|+.++...
T Consensus 194 kpgG~l~i~~~~~ 206 (383)
T 4fsd_A 194 RDGGELYFSDVYA 206 (383)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CCCCEEEEEEecc
Confidence 9999999986443
No 170
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.64 E-value=8.6e-08 Score=98.99 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=83.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~~ 156 (730)
++.+|||+|||+|..+..++.. ...|+|+|+++..+..++.+++..+. .++.+...|+..++..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---- 132 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-----------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH---- 132 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG----
T ss_pred CCCEEEEeCCcchHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh----
Confidence 3679999999999999988775 36899999999999999999988887 6889999988775421
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++.. ++..-++ ...+|..+.++|||||+++.++.
T Consensus 133 ----------------~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 133 ----------------LETPVDLILFHA------VLEWVAD----------------PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ----------------CSSCEEEEEEES------CGGGCSC----------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----------------cCCCceEEEECc------hhhcccC----------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 126899999842 2211111 14689999999999999999876
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
+
T Consensus 175 ~ 175 (285)
T 4htf_A 175 N 175 (285)
T ss_dssp B
T ss_pred C
Confidence 4
No 171
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.64 E-value=6.7e-08 Score=97.72 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=80.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
..+.++.+|||+|||+|..+..++.. .+.|+++|+++..+..+++++ ..+..++.+...|+..++.
T Consensus 35 ~~~~~~~~vLDiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~-- 100 (263)
T 2yqz_A 35 HPKGEEPVFLELGVGTGRIALPLIAR-----------GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL-- 100 (263)
T ss_dssp CCSSSCCEEEEETCTTSTTHHHHHTT-----------TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--
T ss_pred cCCCCCCEEEEeCCcCCHHHHHHHHC-----------CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--
Confidence 35678999999999999999988764 368999999999999998877 3445678888888876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++.. .+...+ -...+|.++.++|||||+++.
T Consensus 101 -------------------~~~~fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~ 139 (263)
T 2yqz_A 101 -------------------PDESVHGVIVVH------LWHLVP----------------DWPKVLAEAIRVLKPGGALLE 139 (263)
T ss_dssp -------------------CTTCEEEEEEES------CGGGCT----------------THHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCeeEEEECC------chhhcC----------------CHHHHHHHHHHHCCCCcEEEE
Confidence 125799999832 111111 124688999999999999998
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
+
T Consensus 140 ~ 140 (263)
T 2yqz_A 140 G 140 (263)
T ss_dssp E
T ss_pred E
Confidence 7
No 172
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.63 E-value=2e-07 Score=94.11 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=80.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||+|||+|..+..+++. ...|+++|+++..+..+++++...+. ++.+...|+..++.
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~---- 102 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER-----------GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF---- 102 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC----
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhccc----
Confidence 457889999999999999988764 35899999999999999999887765 57788888766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...||.|+|... .... + -.....++|..+.++|+|||+++..+
T Consensus 103 ------------------~~~fD~v~~~~~--~~~~----------~-------~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 103 ------------------KNEFDAVTMFFS--TIMY----------F-------DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp ------------------CSCEEEEEECSS--GGGG----------S-------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCccEEEEcCC--chhc----------C-------CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 146999997211 0000 0 01234678999999999999999764
No 173
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.63 E-value=9.8e-08 Score=99.91 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
-++.+|||+|||+|..+..|+..+. ...|+|+|+|+..+..++.+++..+
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~---------~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWG---------PSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTC---------CSEEEEEESCHHHHHHHHHTC----
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHHHHhhh
Confidence 4789999999999999999998753 3699999999999999988876554
No 174
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.62 E-value=2.4e-08 Score=101.21 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=79.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC-HHHHHHH---HHHHHHcCCCceEEEecccccCCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD-VQRCNLL---IHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d-~~Rl~~L---~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
.+++++|||+|||+|..+..|+... +.+.|+|+|++ ...+..+ +.++++.+.+++.+...|+..+|.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~---------~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~ 92 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIND---------QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF 92 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTC---------TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh
Confidence 3689999999999999999987641 46899999999 5544444 777777788899999999887652
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
. ....||.|.+..|- +.....+ ......+|..+.++|||||++
T Consensus 93 ~--------------------~~d~v~~i~~~~~~---------~~~~~~~--------~~~~~~~l~~~~r~LkpGG~l 135 (225)
T 3p2e_A 93 E--------------------LKNIADSISILFPW---------GTLLEYV--------IKPNRDILSNVADLAKKEAHF 135 (225)
T ss_dssp G--------------------GTTCEEEEEEESCC---------HHHHHHH--------HTTCHHHHHHHHTTEEEEEEE
T ss_pred h--------------------ccCeEEEEEEeCCC---------cHHhhhh--------hcchHHHHHHHHHhcCCCcEE
Confidence 1 01457777775550 1100000 001245788999999999999
Q ss_pred EEEc
Q 004787 232 VYST 235 (730)
Q Consensus 232 VYST 235 (730)
+.++
T Consensus 136 ~i~~ 139 (225)
T 3p2e_A 136 EFVT 139 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9844
No 175
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.60 E-value=1.1e-07 Score=90.10 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=87.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+++.++.+|||+|||+|..+..+++. .+.|+++|+++..+..++.+ .+++.+...| ..+
T Consensus 13 ~~~~~~~~vLDiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~---- 71 (170)
T 3i9f_A 13 IFEGKKGVIVDYGCGNGFYCKYLLEF-----------ATKLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI---- 71 (170)
T ss_dssp HHSSCCEEEEEETCTTCTTHHHHHTT-----------EEEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS----
T ss_pred cCcCCCCeEEEECCCCCHHHHHHHhh-----------cCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC----
Confidence 45788999999999999998888764 24899999999999888776 4577777776 211
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++... +..-+ ....+|.++.++|||||+++.
T Consensus 72 -------------------~~~~~D~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~~ 110 (170)
T 3i9f_A 72 -------------------PDNSVDFILFANS------FHDMD----------------DKQHVISEVKRILKDDGRVII 110 (170)
T ss_dssp -------------------CTTCEEEEEEESC------STTCS----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCceEEEEEccc------hhccc----------------CHHHHHHHHHHhcCCCCEEEE
Confidence 1267999997432 11111 124688999999999999999
Q ss_pred EcCCCCCCC---------cHHHHHHHHHHCCCcEEEEec
Q 004787 234 STCSMNPVE---------NEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 234 STCSl~p~E---------NEaVV~~~L~~~~~~velvd~ 263 (730)
++....... ...-+..+|+ .++++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----Gf~~~~~ 145 (170)
T 3i9f_A 111 IDWRKENTGIGPPLSIRMDEKDYMGWFS----NFVVEKR 145 (170)
T ss_dssp EEECSSCCSSSSCGGGCCCHHHHHHHTT----TEEEEEE
T ss_pred EEcCccccccCchHhhhcCHHHHHHHHh----CcEEEEc
Confidence 876543222 2344555555 3666554
No 176
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.60 E-value=3.7e-08 Score=104.69 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=72.7
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.|+++++.+|||+|||+|+.|..|++.+. .+.|+|+|.|+..+..++++++.++ .++.+.+.|+..++..
T Consensus 21 ~L~~~~g~~vLD~g~G~G~~s~~la~~~~---------~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 21 FLKPEDEKIILDCTVGEGGHSRAILEHCP---------GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFL 90 (301)
T ss_dssp HHCCCTTCEEEETTCTTSHHHHHHHHHCT---------TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHH
T ss_pred hcCCCCCCEEEEEeCCcCHHHHHHHHHCC---------CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHH
Confidence 46778999999999999999999998742 4799999999999999999998887 7899999887765321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
+ .......||.|++|+|||.
T Consensus 91 -l---------------~~~g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 91 -L---------------KTLGIEKVDGILMDLGVST 110 (301)
T ss_dssp -H---------------HHTTCSCEEEEEEECSCCH
T ss_pred -H---------------HhcCCCCCCEEEEcCccch
Confidence 0 0001147999999999985
No 177
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.59 E-value=7.1e-08 Score=102.00 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=81.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEecccccCCCc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----CTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----g~~nv~vt~~Da~~fp~~ 152 (730)
...+|||+|||.|+.+..++... +...|+++|+|+..+.++++++..+ ..+++.+...|+..+...
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~---------~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~ 153 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHK---------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCT---------TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C
T ss_pred CCCEEEEEeCChhHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh
Confidence 45799999999999988887642 3578999999999999999998765 245788999998775321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++|++.. .| +. .+-...+++..+.++|+|||+||
T Consensus 154 --------------------~~~~fDvIi~D~~~p-~~-------------~~----~~l~~~~f~~~~~~~LkpgG~lv 195 (294)
T 3adn_A 154 --------------------TSQTFDVIISDCTDP-IG-------------PG----ESLFTSAFYEGCKRCLNPGGIFV 195 (294)
T ss_dssp --------------------CCCCEEEEEECC----------------------------CCHHHHHHHHHTEEEEEEEE
T ss_pred --------------------cCCCccEEEECCCCc-cC-------------cc----hhccHHHHHHHHHHhcCCCCEEE
Confidence 126799999998721 11 00 01112567888999999999999
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
..++|
T Consensus 196 ~~~~s 200 (294)
T 3adn_A 196 AQNGV 200 (294)
T ss_dssp EEEEE
T ss_pred EecCC
Confidence 88765
No 178
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.59 E-value=1.1e-07 Score=105.01 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=82.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-------HcCC--CceEEEe
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-------RMCT--ANLIVTN 143 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk-------Rlg~--~nv~vt~ 143 (730)
.+++++|++|||+|||.|..++++|... +.+.|+|+|+++..+.+++.+++ .+|. .++.+.+
T Consensus 168 ~l~l~~gd~VLDLGCGtG~l~l~lA~~~---------g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 168 EIKMTDDDLFVDLGSGVGQVVLQVAAAT---------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHHHC---------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 4578999999999999999999998753 23579999999999988887653 3454 6799999
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004787 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (730)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (730)
+|+..+|.. .....||.|++..+|- .|+. ...|...++
T Consensus 239 GD~~~lp~~-------------------d~~~~aDVVf~Nn~~F-------~pdl----------------~~aL~Ei~R 276 (438)
T 3uwp_A 239 GDFLSEEWR-------------------ERIANTSVIFVNNFAF-------GPEV----------------DHQLKERFA 276 (438)
T ss_dssp CCTTSHHHH-------------------HHHHTCSEEEECCTTC-------CHHH----------------HHHHHHHHT
T ss_pred CcccCCccc-------------------cccCCccEEEEccccc-------CchH----------------HHHHHHHHH
Confidence 998764310 0114699999976541 1111 234566789
Q ss_pred hccCCCEEEEE
Q 004787 224 LLKVGGRIVYS 234 (730)
Q Consensus 224 lLKpGGrLVYS 234 (730)
.|||||+||.+
T Consensus 277 vLKPGGrIVss 287 (438)
T 3uwp_A 277 NMKEGGRIVSS 287 (438)
T ss_dssp TSCTTCEEEES
T ss_pred cCCCCcEEEEe
Confidence 99999999965
No 179
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.58 E-value=6.7e-08 Score=101.09 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=82.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----------CCCceEEEecc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----------CTANLIVTNHE 145 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----------g~~nv~vt~~D 145 (730)
..+.+|||+|||.|+.+..++.. +.+.|+++|+|+..+..+++++ ++ ..+++.+...|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~----------~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D 142 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH----------DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGD 142 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----------CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECc
Confidence 35679999999999998888654 2479999999999999999887 44 23578888888
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
+..+.. . ...||.|++|+|+. .|. + ..+ .+.+++..+.++|
T Consensus 143 ~~~~l~--------------------~-~~~fD~Ii~d~~~~-~~~----~-----------~~l--~~~~~l~~~~~~L 183 (281)
T 1mjf_A 143 GFEFIK--------------------N-NRGFDVIIADSTDP-VGP----A-----------KVL--FSEEFYRYVYDAL 183 (281)
T ss_dssp HHHHHH--------------------H-CCCEEEEEEECCCC-C--------------------T--TSHHHHHHHHHHE
T ss_pred hHHHhc--------------------c-cCCeeEEEECCCCC-CCc----c-----------hhh--hHHHHHHHHHHhc
Confidence 765311 1 25799999999852 121 0 011 1356788899999
Q ss_pred cCCCEEEEEcCCC
Q 004787 226 KVGGRIVYSTCSM 238 (730)
Q Consensus 226 KpGGrLVYSTCSl 238 (730)
+|||+++..+++.
T Consensus 184 ~pgG~lv~~~~~~ 196 (281)
T 1mjf_A 184 NNPGIYVTQAGSV 196 (281)
T ss_dssp EEEEEEEEEEEET
T ss_pred CCCcEEEEEcCCc
Confidence 9999999987764
No 180
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.55 E-value=1.6e-07 Score=101.07 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=91.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~ 152 (730)
+...++.+|||+|||+|..+..+++. +.+.|+|+|+++ .+..++++++..+. .++.+...|+..++.
T Consensus 46 l~~~~~~~VLDiGcGtG~ls~~la~~----------g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~- 113 (348)
T 2y1w_A 46 HTDFKDKIVLDVGCGSGILSFFAAQA----------GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL- 113 (348)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-
T ss_pred cccCCcCEEEEcCCCccHHHHHHHhC----------CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-
Confidence 44568999999999999999888764 246999999996 78888888888887 578898888766431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
..+||+|+++.+....+ + ......+..+.++|||||+++
T Consensus 114 ---------------------~~~~D~Ivs~~~~~~~~----~----------------~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 114 ---------------------PEQVDIIISEPMGYMLF----N----------------ERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp ---------------------SSCEEEEEECCCBTTBT----T----------------TSHHHHHHHGGGGEEEEEEEE
T ss_pred ---------------------CCceeEEEEeCchhcCC----h----------------HHHHHHHHHHHhhcCCCeEEE
Confidence 14799999975522111 0 011345667889999999999
Q ss_pred EEcCCCC--CCCcHHHHHHHH
Q 004787 233 YSTCSMN--PVENEAVVAEIL 251 (730)
Q Consensus 233 YSTCSl~--p~ENEaVV~~~L 251 (730)
.+++++. |.+.+..-.+.+
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~ 173 (348)
T 2y1w_A 153 PTIGDVHLAPFTDEQLYMEQF 173 (348)
T ss_dssp SCEEEEEEEEECCHHHHHHHH
T ss_pred EecCcEEEEEecchHHhhhhc
Confidence 8877754 667666554444
No 181
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.55 E-value=2.6e-07 Score=92.21 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=80.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||+|||+|..+..++.. ..|+++|+++..+..++.++...+ .++.+...|+..++.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~------------~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---- 93 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH------------YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---- 93 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT------------SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC----
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC------------CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC----
Confidence 356789999999999988877542 589999999999999999988776 467778887766431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...||.|++... ++...+ -.....++|.++.++|+|||+++.++
T Consensus 94 ------------------~~~fD~v~~~~~-----~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 94 ------------------PEPVDAITILCD-----SLNYLQ-------------TEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp ------------------SSCEEEEEECTT-----GGGGCC-------------SHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCcCEEEEeCC-----chhhcC-------------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 157999997421 111000 01233568899999999999999877
Q ss_pred CC
Q 004787 236 CS 237 (730)
Q Consensus 236 CS 237 (730)
.+
T Consensus 138 ~~ 139 (243)
T 3d2l_A 138 HS 139 (243)
T ss_dssp EC
T ss_pred CC
Confidence 65
No 182
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.55 E-value=1.6e-07 Score=100.96 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=87.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~ 152 (730)
+.+.++.+|||+|||+|..+..+++. +.+.|+|+|+++ .+..++++++..+. .++.+...|+..++.
T Consensus 60 ~~~~~~~~VLDiGcGtG~ls~~la~~----------g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 127 (340)
T 2fyt_A 60 PHIFKDKVVLDVGCGTGILSMFAAKA----------GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL- 127 (340)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-
T ss_pred hhhcCCCEEEEeeccCcHHHHHHHHc----------CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC-
Confidence 34567899999999999998888764 136899999996 89999999998887 679999988876431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...+||.|+++.... . +. + ......+|..+.++|||||+++
T Consensus 128 --------------------~~~~~D~Ivs~~~~~--~-l~-~---------------~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 128 --------------------PVEKVDVIISEWMGY--F-LL-F---------------ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp --------------------SCSCEEEEEECCCBT--T-BT-T---------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCcEEEEEEcCchh--h-cc-C---------------HHHHHHHHHHHHhhcCCCcEEE
Confidence 125799999865210 0 00 0 0112357888889999999999
Q ss_pred EEcCCC--CCCCcHHH
Q 004787 233 YSTCSM--NPVENEAV 246 (730)
Q Consensus 233 YSTCSl--~p~ENEaV 246 (730)
.+.|++ .+.++...
T Consensus 169 p~~~~~~~~~~~~~~~ 184 (340)
T 2fyt_A 169 PDICTISLVAVSDVNK 184 (340)
T ss_dssp SCEEEEEEEEECCHHH
T ss_pred cccceEEEEEecchhH
Confidence 665543 34555544
No 183
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.55 E-value=1.4e-07 Score=97.23 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=80.0
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
..+.+.++.+|||+|||+|..+..+++ . .+.|+++|+++..+..++.+. +++.+...|+..+|.
T Consensus 51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~---------~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~ 114 (279)
T 3ccf_A 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--S---------GAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV 114 (279)
T ss_dssp HHHCCCTTCEEEEETCTTSHHHHHHHH--T---------TCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHh--C---------CCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc
Confidence 455678899999999999999999877 1 479999999999998877653 566777777766431
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
...||.|++... +...+ -...+|.++.++|||||++
T Consensus 115 ----------------------~~~fD~v~~~~~------l~~~~----------------d~~~~l~~~~~~LkpgG~l 150 (279)
T 3ccf_A 115 ----------------------DKPLDAVFSNAM------LHWVK----------------EPEAAIASIHQALKSGGRF 150 (279)
T ss_dssp ----------------------SSCEEEEEEESC------GGGCS----------------CHHHHHHHHHHHEEEEEEE
T ss_pred ----------------------CCCcCEEEEcch------hhhCc----------------CHHHHHHHHHHhcCCCcEE
Confidence 257999997321 11111 1246788999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
+.++...
T Consensus 151 ~~~~~~~ 157 (279)
T 3ccf_A 151 VAEFGGK 157 (279)
T ss_dssp EEEEECT
T ss_pred EEEecCC
Confidence 9987653
No 184
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.55 E-value=1e-07 Score=99.40 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=82.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccCCCcccC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~---~nv~vt~~Da~~fp~~~~~ 155 (730)
+.+|||+|||+|..+..+++. ...|+|+|+++..+..++.++...+. .++.+...|+..++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---- 147 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL-----------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---- 147 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT-----------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC----
T ss_pred CCcEEEEeccCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc----
Confidence 349999999999999988764 25799999999999999999887764 578899998877542
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...||.|+|.. ..+..+. ...+.++|.++.++|||||+|+.++
T Consensus 148 ------------------~~~fD~v~~~~------------~~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 148 ------------------DKRFGTVVISS------------GSINELD-------EADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp ------------------SCCEEEEEECH------------HHHTTSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCcCEEEECC------------cccccCC-------HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 26799998621 0111110 1234678999999999999999998
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
...
T Consensus 191 ~~~ 193 (299)
T 3g2m_A 191 AMS 193 (299)
T ss_dssp ECC
T ss_pred ecC
Confidence 776
No 185
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.54 E-value=2.6e-07 Score=91.91 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=74.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||++||+|..+..+++. ...|+++|+++..+..++.+... ++.+...|+..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~------ 99 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-----------FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ------ 99 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-----------CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC------
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-----------CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC------
Confidence 46789999999999998888653 23799999999998887765432 6788888776541
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH-hhccCCCEEEEEc
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI-SLLKVGGRIVYST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl-~lLKpGGrLVYST 235 (730)
....||.|++- +++.+.++ ...+|.++. ++|||||+|+.++
T Consensus 100 ----------------~~~~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 100 ----------------LPRRYDNIVLT------HVLEHIDD----------------PVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ----------------CSSCEEEEEEE------SCGGGCSS----------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ----------------cCCcccEEEEh------hHHHhhcC----------------HHHHHHHHHHHhcCCCCEEEEEc
Confidence 12679999972 22221111 146889999 9999999999987
Q ss_pred CC
Q 004787 236 CS 237 (730)
Q Consensus 236 CS 237 (730)
..
T Consensus 142 ~~ 143 (250)
T 2p7i_A 142 PN 143 (250)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 186
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.54 E-value=1.2e-07 Score=98.03 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=84.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEecccccC
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT----ANLIVTNHEAQHF 149 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~----~nv~vt~~Da~~f 149 (730)
+...++.+|||+|||+|..+..+++. ...|+|+|+++..+..+++++...+. .++.+...|+..+
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (293)
T 3thr_A 53 LRQHGCHRVLDVACGTGVDSIMLVEE-----------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL 121 (293)
T ss_dssp HHHTTCCEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred hcccCCCEEEEecCCCCHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence 34467899999999999999988775 24899999999999999888754432 3566777776553
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+.- ......||.|+|- |. ++.+-++.+ .-.....++|.++.++|||||
T Consensus 122 ~~~------------------~~~~~~fD~V~~~----g~-~l~~~~~~~---------~~~~~~~~~l~~~~~~LkpgG 169 (293)
T 3thr_A 122 DKD------------------VPAGDGFDAVICL----GN-SFAHLPDSK---------GDQSEHRLALKNIASMVRPGG 169 (293)
T ss_dssp HHH------------------SCCTTCEEEEEEC----TT-CGGGSCCSS---------SSSHHHHHHHHHHHHTEEEEE
T ss_pred ccc------------------cccCCCeEEEEEc----Ch-HHhhcCccc---------cCHHHHHHHHHHHHHHcCCCe
Confidence 310 0123689999982 11 121111110 001234678999999999999
Q ss_pred EEEEEcCCC
Q 004787 230 RIVYSTCSM 238 (730)
Q Consensus 230 rLVYSTCSl 238 (730)
+++.++++.
T Consensus 170 ~l~~~~~~~ 178 (293)
T 3thr_A 170 LLVIDHRNY 178 (293)
T ss_dssp EEEEEEECH
T ss_pred EEEEEeCCH
Confidence 999998864
No 187
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.54 E-value=1.3e-07 Score=101.80 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=84.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~ 154 (730)
+.++.+|||+|||+|..+..+++. +.+.|+|+|++ ..+..++.+++..+..+ +.+...|+..++.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~----------g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--- 129 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA----------GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL--- 129 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT----------TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC---
T ss_pred cCCCCEEEEEeccchHHHHHHHHC----------CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC---
Confidence 457899999999999998888775 24699999999 59999999999988765 8899998877531
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...+||.|+++....... . ......+|..+.++|||||+++.+
T Consensus 130 ------------------~~~~fD~Iis~~~~~~l~----~---------------~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 130 ------------------PVEKVDIIISEWMGYCLF----Y---------------ESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ------------------SSSCEEEEEECCCBBTBT----B---------------TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ------------------CCCceEEEEEcccccccc----C---------------chhHHHHHHHHHHhCCCCCEEccc
Confidence 126799999975421110 0 011235777888999999999977
Q ss_pred cCCC
Q 004787 235 TCSM 238 (730)
Q Consensus 235 TCSl 238 (730)
.+++
T Consensus 173 ~~~~ 176 (349)
T 3q7e_A 173 RATL 176 (349)
T ss_dssp EEEE
T ss_pred cceE
Confidence 6664
No 188
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.53 E-value=3.3e-07 Score=102.00 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=81.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH-------HHHHHHcC--CCceEEEe
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL-------IHQTKRMC--TANLIVTN 143 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L-------~~nlkRlg--~~nv~vt~ 143 (730)
.+++.++++|||+|||+|..+..+|...+ .+.|+|+|+++..+..+ +.+++++| ..++.+..
T Consensus 237 ~l~l~~g~~VLDLGCGsG~la~~LA~~~g---------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 237 QCQLKKGDTFMDLGSGVGNCVVQAALECG---------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HTTCCTTCEEEEESCTTSHHHHHHHHHHC---------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHCC---------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 35788999999999999999999998753 36899999999998888 88888888 56888887
Q ss_pred cccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004787 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (730)
Q Consensus 144 ~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (730)
+|+..-+. +.......||+|++...+- .++ ....|....+
T Consensus 308 gD~~~~~~-----------------~~~~~~~~FDvIvvn~~l~-------~~d----------------~~~~L~el~r 347 (433)
T 1u2z_A 308 KKSFVDNN-----------------RVAELIPQCDVILVNNFLF-------DED----------------LNKKVEKILQ 347 (433)
T ss_dssp SSCSTTCH-----------------HHHHHGGGCSEEEECCTTC-------CHH----------------HHHHHHHHHT
T ss_pred cCcccccc-----------------ccccccCCCCEEEEeCccc-------ccc----------------HHHHHHHHHH
Confidence 65432100 0000125799999853310 011 1235678899
Q ss_pred hccCCCEEEEE
Q 004787 224 LLKVGGRIVYS 234 (730)
Q Consensus 224 lLKpGGrLVYS 234 (730)
.|||||+||.+
T Consensus 348 ~LKpGG~lVi~ 358 (433)
T 1u2z_A 348 TAKVGCKIISL 358 (433)
T ss_dssp TCCTTCEEEES
T ss_pred hCCCCeEEEEe
Confidence 99999999875
No 189
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.53 E-value=2.6e-07 Score=97.79 Aligned_cols=118 Identities=10% Similarity=0.059 Sum_probs=74.4
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEEecccccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA------NLIVTNHEAQHFP 150 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~------nv~vt~~Da~~fp 150 (730)
.++.+|||+|||+|+-+..++.. ..+.|+|+|+|+..+..++.+....+.. ++.+...|...-.
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~----------~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~ 116 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG----------EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDT 116 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSS
T ss_pred CCCCeEEEEecCCcHhHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccch
Confidence 45889999999999866554432 1368999999999999999988766542 2334444432100
Q ss_pred C-cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 151 G-CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
. ..+ +.......||.|+|-- .+ +.-|... + +..+|.++.++|||||
T Consensus 117 ~~~~l--------------~~~~~~~~FD~V~~~~------~l------hy~~~~~-----~--~~~~l~~~~r~LkpGG 163 (302)
T 2vdw_A 117 FVSSV--------------REVFYFGKFNIIDWQF------AI------HYSFHPR-----H--YATVMNNLSELTASGG 163 (302)
T ss_dssp HHHHH--------------HTTCCSSCEEEEEEES------CG------GGTCSTT-----T--HHHHHHHHHHHEEEEE
T ss_pred hhhhh--------------hccccCCCeeEEEECc------hH------HHhCCHH-----H--HHHHHHHHHHHcCCCC
Confidence 0 000 0001236899999721 11 0011111 1 2578999999999999
Q ss_pred EEEEEcCC
Q 004787 230 RIVYSTCS 237 (730)
Q Consensus 230 rLVYSTCS 237 (730)
+++.+|+.
T Consensus 164 ~~i~~~~~ 171 (302)
T 2vdw_A 164 KVLITTMD 171 (302)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCC
Confidence 99998875
No 190
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.53 E-value=1.3e-07 Score=94.81 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=81.3
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc-cCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ-HFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~-~fp~~~~ 154 (730)
+.++.+|||+|||+|..+..+++. ...|+|+|+++..+..++++ .+++.+...|+. .+|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---- 105 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ-----------AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP---- 105 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG-----------SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC----
Confidence 468899999999999999888765 35899999999999988776 457888888874 322
Q ss_pred CCCCCCCCccccccccccc-cccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 155 NKNFSSASDKGIESESNMG-QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.. ...||.|++.. . +..+|.++.++|||||+|+.
T Consensus 106 -----------------~~~~~~fD~v~~~~----------~------------------~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 106 -----------------AGLGAPFGLIVSRR----------G------------------PTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp -----------------TTCCCCEEEEEEES----------C------------------CSGGGGGHHHHEEEEEEEEE
T ss_pred -----------------CcCCCCEEEEEeCC----------C------------------HHHHHHHHHHHcCCCcEEEE
Confidence 11 26799999841 0 12346677889999999993
Q ss_pred EcCCCCCCCcHHHHHHHHHHCC
Q 004787 234 STCSMNPVENEAVVAEILRKCE 255 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~~~ 255 (730)
... ..+...+...|.+.|
T Consensus 141 ~~~----~~~~~~~~~~l~~~G 158 (226)
T 3m33_A 141 VGP----RLNVPEVPERLAAVG 158 (226)
T ss_dssp EES----SSCCTHHHHHHHHTT
T ss_pred eCC----cCCHHHHHHHHHHCC
Confidence 322 234445678888876
No 191
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.53 E-value=1.5e-07 Score=94.03 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=78.7
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
++...++.+|||+|||+|..+..++.. + .+.|+++|+++..+..++++.. ..++.+...|+..++.
T Consensus 38 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~---------~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~- 103 (243)
T 3bkw_A 38 MLPEVGGLRIVDLGCGFGWFCRWAHEH-G---------ASYVLGLDLSEKMLARARAAGP---DTGITYERADLDKLHL- 103 (243)
T ss_dssp HSCCCTTCEEEEETCTTCHHHHHHHHT-T---------CSEEEEEESCHHHHHHHHHTSC---SSSEEEEECCGGGCCC-
T ss_pred hccccCCCEEEEEcCcCCHHHHHHHHC-C---------CCeEEEEcCCHHHHHHHHHhcc---cCCceEEEcChhhccC-
Confidence 455568999999999999999888764 1 2489999999999988776542 2467788887766431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++... +...+ ....+|.++.++|+|||+++
T Consensus 104 --------------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~ 141 (243)
T 3bkw_A 104 --------------------PQDSFDLAYSSLA------LHYVE----------------DVARLFRTVHQALSPGGHFV 141 (243)
T ss_dssp --------------------CTTCEEEEEEESC------GGGCS----------------CHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCceEEEEecc------ccccc----------------hHHHHHHHHHHhcCcCcEEE
Confidence 1267999997321 11111 12468899999999999999
Q ss_pred EEcC
Q 004787 233 YSTC 236 (730)
Q Consensus 233 YSTC 236 (730)
.++.
T Consensus 142 ~~~~ 145 (243)
T 3bkw_A 142 FSTE 145 (243)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9863
No 192
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.52 E-value=1.6e-07 Score=98.33 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=84.5
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEecccccCCCc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGC 152 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg----~~nv~vt~~Da~~fp~~ 152 (730)
..+.+|||+|||.|+.+..++... +...|+++|+|+..+..+++++..++ .+++.+...|+..+..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~- 146 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK---------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE- 146 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH-
Confidence 356799999999999988886531 34799999999999999998876543 4678888888876421
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|++|++.. .|. . ..+ ...+++..+.++|+|||++|
T Consensus 147 -------------------~~~~~fD~Ii~d~~~~-~~~-------------~--~~l--~~~~~l~~~~~~L~pgG~lv 189 (283)
T 2i7c_A 147 -------------------NVTNTYDVIIVDSSDP-IGP-------------A--ETL--FNQNFYEKIYNALKPNGYCV 189 (283)
T ss_dssp -------------------HCCSCEEEEEEECCCT-TTG-------------G--GGG--SSHHHHHHHHHHEEEEEEEE
T ss_pred -------------------hCCCCceEEEEcCCCC-CCc-------------c--hhh--hHHHHHHHHHHhcCCCcEEE
Confidence 0126799999998631 111 0 011 12567889999999999999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
..++|.
T Consensus 190 ~~~~~~ 195 (283)
T 2i7c_A 190 AQCESL 195 (283)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 987763
No 193
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.52 E-value=6e-08 Score=101.05 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=69.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEE--ecccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA------NLIVT--NHEAQ 147 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~------nv~vt--~~Da~ 147 (730)
+++|.+|||+|||||++|..+++. +.|+|+|+++- +.. ++..... ++.+. ..|+.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~------------~~V~gvD~s~m-~~~----a~~~~~~~~~~~~~v~~~~~~~D~~ 134 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR------------PHVMDVRAYTL-GVG----GHEVPRITESYGWNIVKFKSRVDIH 134 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS------------TTEEEEEEECC-CCS----SCCCCCCCCBTTGGGEEEECSCCTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc------------CcEEEEECchh-hhh----hhhhhhhhhccCCCeEEEecccCHh
Confidence 578999999999999999887653 57999999872 111 1111111 56666 66666
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.++ ...||.|+||.. ...|. +.. -+..+..+|..+.++|||
T Consensus 135 ~l~-----------------------~~~fD~V~sd~~-~~~~~----~~~-----------d~~~~l~~L~~~~r~Lkp 175 (265)
T 2oxt_A 135 TLP-----------------------VERTDVIMCDVG-ESSPK----WSV-----------ESERTIKILELLEKWKVK 175 (265)
T ss_dssp TSC-----------------------CCCCSEEEECCC-CCCSC----HHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HCC-----------------------CCCCcEEEEeCc-ccCCc----cch-----------hHHHHHHHHHHHHHHhcc
Confidence 543 257999999975 33331 100 011122378888999999
Q ss_pred CC--EEEEEcCC
Q 004787 228 GG--RIVYSTCS 237 (730)
Q Consensus 228 GG--rLVYSTCS 237 (730)
|| .+|..+-.
T Consensus 176 GG~~~fv~kv~~ 187 (265)
T 2oxt_A 176 NPSADFVVKVLC 187 (265)
T ss_dssp CTTCEEEEEESC
T ss_pred CCCeEEEEEeCC
Confidence 99 99886543
No 194
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.52 E-value=2e-07 Score=91.56 Aligned_cols=106 Identities=14% Similarity=0.011 Sum_probs=73.0
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
...++.+|||++||+|..+..+++. ...|+++|+++..+..++.+ .++.+...+...+....
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~l~~~-----------~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~- 110 (227)
T 3e8s_A 49 LGRQPERVLDLGCGEGWLLRALADR-----------GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAK- 110 (227)
T ss_dssp HHTCCSEEEEETCTTCHHHHHHHTT-----------TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTC-
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHHC-----------CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccc-
Confidence 3456799999999999998888764 25899999999998877765 33445555554431100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
......||.|++..... .+ ....+|..+.++|||||+|+.+
T Consensus 111 ----------------~~~~~~fD~v~~~~~l~-------~~----------------~~~~~l~~~~~~L~pgG~l~~~ 151 (227)
T 3e8s_A 111 ----------------VPVGKDYDLICANFALL-------HQ----------------DIIELLSAMRTLLVPGGALVIQ 151 (227)
T ss_dssp ----------------SCCCCCEEEEEEESCCC-------SS----------------CCHHHHHHHHHTEEEEEEEEEE
T ss_pred ----------------cccCCCccEEEECchhh-------hh----------------hHHHHHHHHHHHhCCCeEEEEE
Confidence 01124699999843211 11 1135788999999999999998
Q ss_pred cCC
Q 004787 235 TCS 237 (730)
Q Consensus 235 TCS 237 (730)
+..
T Consensus 152 ~~~ 154 (227)
T 3e8s_A 152 TLH 154 (227)
T ss_dssp ECC
T ss_pred ecC
Confidence 753
No 195
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.52 E-value=8.3e-07 Score=89.26 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=86.7
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
.+.++.+|||+|||+|..+..+++. ...|+++|+++..+..++.+ +.+...|+..+..
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~--- 95 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEE-----------GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLK--- 95 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHH-----------TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHH---
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhC-----------CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhh---
Confidence 4578899999999999999888775 24699999999998877654 4566666554310
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
......||.|++. +++.+-++ .....+|..+.++|||||+++.+
T Consensus 96 ----------------~~~~~~fD~i~~~------~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 96 ----------------SLPDKYLDGVMIS------HFVEHLDP--------------ERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp ----------------TSCTTCBSEEEEE------SCGGGSCG--------------GGHHHHHHHHHHHBCTTCCEEEE
T ss_pred ----------------hcCCCCeeEEEEC------CchhhCCc--------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 1123689999972 22221111 01256889999999999999998
Q ss_pred cCCCCC---------------CCcHHHHHHHHHHCCCcEEEEec
Q 004787 235 TCSMNP---------------VENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 235 TCSl~p---------------~ENEaVV~~~L~~~~~~velvd~ 263 (730)
+..... .-...-+..+|++.| ++++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG--f~~~~~ 181 (240)
T 3dli_A 140 SPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLG--FRDVKI 181 (240)
T ss_dssp EECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHT--CEEEEE
T ss_pred eCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCC--CeEEEE
Confidence 765321 123356677788776 444443
No 196
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.51 E-value=3.2e-07 Score=91.40 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=80.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..+++. ...|+++|+++..+..++.++...+. ++.+...|+..++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-----------~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------ 98 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-----------FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI------ 98 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-----------SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC------
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-----------CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc------
Confidence 7889999999999998888664 24799999999999999999887765 67788887766431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
...||.|++.. +++...++ ......+|.++.++|||||+++.++.+
T Consensus 99 ----------------~~~fD~v~~~~-----~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 99 ----------------NRKFDLITCCL-----DSTNYIID-------------SDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp ----------------SCCEEEEEECT-----TGGGGCCS-------------HHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ----------------cCCceEEEEcC-----ccccccCC-------------HHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 15799999732 01111100 023457899999999999999986543
No 197
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.51 E-value=3.6e-07 Score=95.21 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=74.0
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
.+.+.++.+|||+|||+|..|..|++. .+.|+|+|+|+.++..++++++.. .+. .+...++..
T Consensus 40 ~l~l~~g~~VLDlGcGtG~~a~~La~~-----------g~~V~gvD~S~~ml~~Ar~~~~~~---~v~---~~~~~~~~~ 102 (261)
T 3iv6_A 40 LENIVPGSTVAVIGASTRFLIEKALER-----------GASVTVFDFSQRMCDDLAEALADR---CVT---IDLLDITAE 102 (261)
T ss_dssp TTTCCTTCEEEEECTTCHHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHTSSS---CCE---EEECCTTSC
T ss_pred hcCCCCcCEEEEEeCcchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHHHhc---cce---eeeeecccc
Confidence 457789999999999999999998874 368999999999999998876543 111 222221110
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
. .......||.|+++.. +. .|. ..-....+.+..++| |||+|+
T Consensus 103 -~---------------~~~~~~~fD~Vv~~~~------l~-------~~~-------~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 103 -I---------------PKELAGHFDFVLNDRL------IN-------RFT-------TEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp -C---------------CGGGTTCCSEEEEESC------GG-------GSC-------HHHHHHHHHHHHHHH-TTSEEE
T ss_pred -c---------------ccccCCCccEEEEhhh------hH-------hCC-------HHHHHHHHHHHHHhC-cCcEEE
Confidence 0 0011257999998542 11 111 122456788888999 999999
Q ss_pred EEcC
Q 004787 233 YSTC 236 (730)
Q Consensus 233 YSTC 236 (730)
.|..
T Consensus 146 lS~~ 149 (261)
T 3iv6_A 146 ASVK 149 (261)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8743
No 198
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.50 E-value=4.9e-07 Score=90.00 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=78.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++... ..|+++|+++..+..++.+. +++.+...|+..++.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~-----------~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----- 97 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF-----------GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL----- 97 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH-----------SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-----
T ss_pred CCCCeEEEecccCCHHHHHHHHhC-----------CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-----
Confidence 578899999999999999998762 37999999999998887653 457777887766431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...||.|+|- . +++...++ .....++|.++.++|||||+++.+++
T Consensus 98 -----------------~~~~D~v~~~----~-~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 98 -----------------GRKFSAVVSM----F-SSVGYLKT-------------TEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp -----------------SSCEEEEEEC----T-TGGGGCCS-------------HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred -----------------CCCCcEEEEc----C-chHhhcCC-------------HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2579999961 1 11111100 12346789999999999999999877
Q ss_pred CC
Q 004787 237 SM 238 (730)
Q Consensus 237 Sl 238 (730)
..
T Consensus 143 ~~ 144 (239)
T 3bxo_A 143 WF 144 (239)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 199
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.49 E-value=2.3e-07 Score=98.47 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=82.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~fp~~ 152 (730)
..+.+|||+|||.|..+..++... +.+.|+++|+|+..+..+++++..+ ..+++.+...|+..+..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~- 163 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP---------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK- 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-
T ss_pred CCCCEEEEECCCchHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh-
Confidence 456799999999999988886541 3579999999999999999987663 24678889888876321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|++|++.. .+ +. .+....+++..+.++|+|||+||
T Consensus 164 -------------------~~~~~fD~Ii~d~~~~-~~-------------~~----~~l~~~~~l~~~~~~LkpgG~lv 206 (304)
T 2o07_A 164 -------------------QNQDAFDVIITDSSDP-MG-------------PA----ESLFKESYYQLMKTALKEDGVLC 206 (304)
T ss_dssp -------------------TCSSCEEEEEEECC-----------------------------CHHHHHHHHHEEEEEEEE
T ss_pred -------------------hCCCCceEEEECCCCC-CC-------------cc----hhhhHHHHHHHHHhccCCCeEEE
Confidence 0125799999998721 11 00 01123567889999999999999
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
..+.+
T Consensus 207 ~~~~~ 211 (304)
T 2o07_A 207 CQGEC 211 (304)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 88744
No 200
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.49 E-value=2.4e-07 Score=95.58 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=78.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-----------------cCCC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-----------------MCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR-----------------lg~~ 137 (730)
.+.++.+|||++||+|.-+..||+. ...|+|+|+++..+..++++... ....
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-----------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-----------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG 133 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-----------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-----------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence 3467899999999999999988875 24899999999999988654321 0125
Q ss_pred ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHH
Q 004787 138 NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQI 217 (730)
Q Consensus 138 nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~I 217 (730)
++.+..+|+..++.. ....||.|++- +++-.-+. ....++
T Consensus 134 ~i~~~~~D~~~l~~~--------------------~~~~FD~V~~~------~~l~~l~~--------------~~~~~~ 173 (252)
T 2gb4_A 134 SISLYCCSIFDLPRA--------------------NIGKFDRIWDR------GALVAINP--------------GDHDRY 173 (252)
T ss_dssp SEEEEESCTTTGGGG--------------------CCCCEEEEEES------SSTTTSCG--------------GGHHHH
T ss_pred ceEEEECccccCCcc--------------------cCCCEEEEEEh------hhhhhCCH--------------HHHHHH
Confidence 688888887764320 11579999962 11211110 123467
Q ss_pred HHHHHhhccCCCEEEEEcCCC
Q 004787 218 AMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSl 238 (730)
+.+..++|||||+++..|...
T Consensus 174 l~~~~~~LkpGG~l~l~~~~~ 194 (252)
T 2gb4_A 174 ADIILSLLRKEFQYLVAVLSY 194 (252)
T ss_dssp HHHHHHTEEEEEEEEEEEEEC
T ss_pred HHHHHHHcCCCeEEEEEEEec
Confidence 889999999999998665443
No 201
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.48 E-value=2e-07 Score=101.47 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=88.9
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~ 152 (730)
+...++.+|||+|||+|..+..+++. + ...|+|+|++ ..+..++.+++..+..+ +.+...|+..++.
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~-g---------~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 126 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA-G---------ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL- 126 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT-T---------CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC-
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc-C---------CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc-
Confidence 34567899999999999999888775 1 3589999999 99999999999988765 8888888876531
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
..+||.|+++....... .. .....++....++|||||+|+
T Consensus 127 ---------------------~~~~D~Iv~~~~~~~l~----~e---------------~~~~~~l~~~~~~LkpgG~li 166 (376)
T 3r0q_C 127 ---------------------PEKVDVIISEWMGYFLL----RE---------------SMFDSVISARDRWLKPTGVMY 166 (376)
T ss_dssp ---------------------SSCEEEEEECCCBTTBT----TT---------------CTHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCcceEEEEcChhhccc----ch---------------HHHHHHHHHHHhhCCCCeEEE
Confidence 16799999966311110 00 012446777789999999999
Q ss_pred EEcCC--CCCCCcHHH
Q 004787 233 YSTCS--MNPVENEAV 246 (730)
Q Consensus 233 YSTCS--l~p~ENEaV 246 (730)
.+.++ +.|.+++..
T Consensus 167 ~~~~~~~~~~~~~~~~ 182 (376)
T 3r0q_C 167 PSHARMWLAPIKSNIA 182 (376)
T ss_dssp SSEEEEEEEEECCTHH
T ss_pred EecCeEEEEeecchHH
Confidence 87666 445565543
No 202
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.48 E-value=6.1e-07 Score=91.68 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=82.8
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHH------HHHHHHHHHHHcCC-CceEEEecc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ------RCNLLIHQTKRMCT-ANLIVTNHE 145 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~------Rl~~L~~nlkRlg~-~nv~vt~~D 145 (730)
.+++.++.+|||+|||+|..+..++...+ +.+.|+++|+++. .+..++++++..+. .++.+...|
T Consensus 38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~g--------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 38 AWQVKPGEKILEIGCGQGDLSAVLADQVG--------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHHHHHC--------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 45678999999999999999999988753 2479999999997 88899988887776 578888776
Q ss_pred cccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc
Q 004787 146 AQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL 225 (730)
Q Consensus 146 a~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL 225 (730)
.+.... .......||.|++... +...++ . ..++.....++
T Consensus 110 --~~~~~~----------------~~~~~~~fD~v~~~~~------l~~~~~---------------~-~~~~~~~~~l~ 149 (275)
T 3bkx_A 110 --NLSDDL----------------GPIADQHFDRVVLAHS------LWYFAS---------------A-NALALLFKNMA 149 (275)
T ss_dssp --CTTTCC----------------GGGTTCCCSEEEEESC------GGGSSC---------------H-HHHHHHHHHHT
T ss_pred --hhhhcc----------------CCCCCCCEEEEEEccc------hhhCCC---------------H-HHHHHHHHHHh
Confidence 111000 1112367999998432 211111 0 12455555667
Q ss_pred cCCCEEEEEcCCCC
Q 004787 226 KVGGRIVYSTCSMN 239 (730)
Q Consensus 226 KpGGrLVYSTCSl~ 239 (730)
++||+++.++.+..
T Consensus 150 ~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 150 AVCDHVDVAEWSMQ 163 (275)
T ss_dssp TTCSEEEEEEECSS
T ss_pred CCCCEEEEEEecCC
Confidence 77999999876654
No 203
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.47 E-value=1e-07 Score=100.01 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=70.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC------ceEEE--ecccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA------NLIVT--NHEAQ 147 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~------nv~vt--~~Da~ 147 (730)
+++|.+|||+|||||++|..+++. +.|+|+|+++ .+.. +++.... ++.+. ..|+.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~------------~~V~gVD~s~-m~~~----a~~~~~~~~~~~~~v~~~~~~~D~~ 142 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ------------PNVREVKAYT-LGTS----GHEKPRLVETFGWNLITFKSKVDVT 142 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS------------TTEEEEEEEC-CCCT----TSCCCCCCCCTTGGGEEEECSCCGG
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc------------CCEEEEECch-hhhh----hhhchhhhhhcCCCeEEEeccCcHh
Confidence 578999999999999999888653 5799999987 2211 1111111 56666 66666
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.+| ...||.|+||.. ...|. +.. -+..+.++|..+.++|||
T Consensus 143 ~l~-----------------------~~~fD~Vvsd~~-~~~~~----~~~-----------d~~~~l~~L~~~~r~Lkp 183 (276)
T 2wa2_A 143 KME-----------------------PFQADTVLCDIG-ESNPT----AAV-----------EASRTLTVLNVISRWLEY 183 (276)
T ss_dssp GCC-----------------------CCCCSEEEECCC-CCCSC----HHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred hCC-----------------------CCCcCEEEECCC-cCCCc----hhh-----------hHHHHHHHHHHHHHHhcc
Confidence 543 257999999875 33331 100 011122378888999999
Q ss_pred CC--EEEEEcCC
Q 004787 228 GG--RIVYSTCS 237 (730)
Q Consensus 228 GG--rLVYSTCS 237 (730)
|| ++|..+-+
T Consensus 184 GG~~~~v~~~~~ 195 (276)
T 2wa2_A 184 NQGCGFCVKVLN 195 (276)
T ss_dssp STTCEEEEEESC
T ss_pred CCCcEEEEEeCC
Confidence 99 99886544
No 204
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.46 E-value=4.4e-07 Score=91.28 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=86.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
..+.++.+|||+|||+|..+..++... ..|+++|+++..+..++.++ ...++.+...|+..++...
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~-----------~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~ 117 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFF-----------PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAA 117 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHS-----------SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhC-----------CCEEEEECCHHHHHHHHHhC---cccCceEEECccccccccc
Confidence 346789999999999999999998762 37999999999998887754 4457888888877643210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.......||.|++.... ...+ . ....++|.++.++|||||+|+.
T Consensus 118 ----------------~~~~~~~~d~v~~~~~~------~~~~-------~-------~~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 118 ----------------QIHSEIGDANIYMRTGF------HHIP-------V-------EKRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp ----------------HHHHHHCSCEEEEESSS------TTSC-------G-------GGHHHHHHHHHHHHTTTCEEEE
T ss_pred ----------------ccccccCccEEEEcchh------hcCC-------H-------HHHHHHHHHHHHHcCCCCEEEE
Confidence 00001349999985421 1111 0 0125688999999999999888
Q ss_pred EcCCCCCCCcHHHHHHHHHH
Q 004787 234 STCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~~ 253 (730)
+..+. .+...+..+...
T Consensus 162 ~~~~~---~~~~~~~~~~~~ 178 (245)
T 3ggd_A 162 IELGT---GCIDFFNSLLEK 178 (245)
T ss_dssp EEECT---THHHHHHHHHHH
T ss_pred EeCCc---cccHHHHHHHhC
Confidence 77654 334444444443
No 205
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.46 E-value=3e-07 Score=98.19 Aligned_cols=127 Identities=15% Similarity=0.069 Sum_probs=90.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCccc
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~ 154 (730)
+.++.+|||+|||+|..+..+++. +.+.|+|+|++ ..+..++++++..+.. ++.+...|+..++.
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~----------g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--- 101 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH----------GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL--- 101 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT----------CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC---
T ss_pred hcCCCEEEEecCccHHHHHHHHHC----------CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC---
Confidence 356889999999999998887764 23689999999 5899999999888875 58888888776431
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
...+||.|+++.+..... +. .....+|..+.++|||||+++.+
T Consensus 102 ------------------~~~~~D~Ivs~~~~~~l~----~~---------------~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 102 ------------------PFPKVDIIISEWMGYFLL----YE---------------SMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp ------------------SSSCEEEEEECCCBTTBS----TT---------------CCHHHHHHHHHHHEEEEEEEESC
T ss_pred ------------------CCCcccEEEEeCchhhcc----cH---------------HHHHHHHHHHHhhcCCCeEEEEe
Confidence 125799999976522211 00 01134677778999999999977
Q ss_pred cCCC--CCCCcHHHHHHHHHH
Q 004787 235 TCSM--NPVENEAVVAEILRK 253 (730)
Q Consensus 235 TCSl--~p~ENEaVV~~~L~~ 253 (730)
++++ .+.+........+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ 165 (328)
T 1g6q_1 145 KCSIHLAGLEDSQYKDEKLNY 165 (328)
T ss_dssp EEEEEEEEECCHHHHHHHHHH
T ss_pred eceEEEEEecCchhhhhhhcc
Confidence 6664 355665544444443
No 206
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.46 E-value=6.4e-07 Score=93.49 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=82.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCcc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~fp~~~ 153 (730)
.+.+|||+|||.|+.+..++... +...|+++|+|+..+..+++++..+ ..+++.+...|+..+..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-- 143 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP---------SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-- 143 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT---------TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH--
T ss_pred CCCEEEEECCchHHHHHHHHhCC---------CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh--
Confidence 45799999999999888876531 2479999999999999999987653 24679999999876421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
.....||.|++|++. ..+. + ..| ...+++..+.++|+|||++|.
T Consensus 144 ------------------~~~~~fD~Ii~d~~~-~~~~----~-----------~~l--~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 144 ------------------KSENQYDVIMVDSTE-PVGP----A-----------VNL--FTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp ------------------TCCSCEEEEEESCSS-CCSC----C-----------CCC--STTHHHHHHHHHEEEEEEEEE
T ss_pred ------------------hCCCCeeEEEECCCC-CCCc----c-----------hhh--hHHHHHHHHHHhcCCCcEEEE
Confidence 012579999999874 1121 0 011 124578888999999999999
Q ss_pred EcCC
Q 004787 234 STCS 237 (730)
Q Consensus 234 STCS 237 (730)
.+.+
T Consensus 188 ~~~~ 191 (275)
T 1iy9_A 188 QTDN 191 (275)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8655
No 207
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.46 E-value=1.8e-07 Score=100.01 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=83.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~fp~~ 152 (730)
..+.+|||+|||+|+.+..++... +...|+++|+|+..+..+++++..+ ..+++.+...|+..+..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~- 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK---------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE- 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-
Confidence 356799999999999988886531 3579999999999999999987653 23578888888765321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|++|++.. .| | . ..+ .+.+++..+.++|+|||+++
T Consensus 185 -------------------~~~~~fDvIi~d~~~p-~~-----~--------~--~~l--~~~~~l~~~~~~LkpgG~lv 227 (321)
T 2pt6_A 185 -------------------NVTNTYDVIIVDSSDP-IG-----P--------A--ETL--FNQNFYEKIYNALKPNGYCV 227 (321)
T ss_dssp -------------------HCCSCEEEEEEECCCS-SS-----G--------G--GGG--SSHHHHHHHHHHEEEEEEEE
T ss_pred -------------------hcCCCceEEEECCcCC-CC-----c--------c--hhh--hHHHHHHHHHHhcCCCcEEE
Confidence 0125799999998521 11 0 0 011 12578889999999999999
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
..+.+
T Consensus 228 ~~~~~ 232 (321)
T 2pt6_A 228 AQCES 232 (321)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 97654
No 208
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.45 E-value=2.4e-07 Score=99.68 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=84.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--C--CCceEEEecccccCCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--C--TANLIVTNHEAQHFPG 151 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl--g--~~nv~vt~~Da~~fp~ 151 (730)
...+.+|||+|||.|..+..++... +...|+++|+|+..+..+++++.++ + .+++.+...|+..+..
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~---------~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~ 188 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHA---------SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK 188 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH
Confidence 3456899999999999988886542 3479999999999999999998764 3 3578899998876421
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
......||.|++|++-. .+ +. .. -...+++..+.++|+|||+|
T Consensus 189 -------------------~~~~~~fDlIi~d~~~p-~~-------------~~--~~--l~~~~~l~~~~~~LkpgG~l 231 (334)
T 1xj5_A 189 -------------------NAAEGSYDAVIVDSSDP-IG-------------PA--KE--LFEKPFFQSVARALRPGGVV 231 (334)
T ss_dssp -------------------TSCTTCEEEEEECCCCT-TS-------------GG--GG--GGSHHHHHHHHHHEEEEEEE
T ss_pred -------------------hccCCCccEEEECCCCc-cC-------------cc--hh--hhHHHHHHHHHHhcCCCcEE
Confidence 00125799999997510 01 00 01 11357889999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
|..+.+.
T Consensus 232 v~~~~~~ 238 (334)
T 1xj5_A 232 CTQAESL 238 (334)
T ss_dssp EEECCCT
T ss_pred EEecCCc
Confidence 9975553
No 209
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.45 E-value=3.7e-07 Score=99.18 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=96.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEecccccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--------ANLIVTNHEAQHF 149 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~--------~nv~vt~~Da~~f 149 (730)
.+.+|||+|+|.|+.+..++.. +...|+++|+|+..+.++++++..++. +++.+...|+..|
T Consensus 188 ~pkrVL~IGgG~G~~arellk~----------~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~ 257 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKL----------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV 257 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT----------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH
Confidence 4679999999999988777543 236899999999999999998754321 2688999998875
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
..- .......||.|++|+|-...|. .| .. .--......++..+.++|+|||
T Consensus 258 L~~-----------------~~~~~~~fDvII~D~~d~P~~~---~p--------~~-L~t~eFy~~~~~~~~~~L~pgG 308 (364)
T 2qfm_A 258 LKR-----------------YAKEGREFDYVINDLTAVPIST---SP--------EE-DSTWEFLRLILDLSMKVLKQDG 308 (364)
T ss_dssp HHH-----------------HHHHTCCEEEEEEECCSSCCCC---C-------------CHHHHHHHHHHHHHHTEEEEE
T ss_pred HHh-----------------hhccCCCceEEEECCCCcccCc---Cc--------hh-hhHHHHHHHHHHHHHhhCCCCc
Confidence 320 0001367999999997311121 11 11 1113455667777899999999
Q ss_pred EEEEEcCCCCCCCcHHHHHHHHHHCCCcEEE
Q 004787 230 RIVYSTCSMNPVENEAVVAEILRKCEGSVEL 260 (730)
Q Consensus 230 rLVYSTCSl~p~ENEaVV~~~L~~~~~~vel 260 (730)
.||.-+||.+..|--......|++.-..+..
T Consensus 309 ilv~qs~s~~~~e~~~~~~~~l~~~F~~v~~ 339 (364)
T 2qfm_A 309 KYFTQGNCVNLTEALSLYEEQLGRLYCPVEF 339 (364)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHTTSSSCEEE
T ss_pred EEEEEcCCcchHHHHHHHHHHHHHhCCceEE
Confidence 9999999988744444455556555445554
No 210
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=98.45 E-value=3.1e-06 Score=90.88 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=84.2
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~ 152 (730)
+++.++.+|||+|||+|..+..+++.. |...++++|+ +..+..+++++...+.. ++.+..+|... + +
T Consensus 178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~ 245 (374)
T 1qzz_A 178 YDWSAVRHVLDVGGGNGGMLAAIALRA---------PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P-L 245 (374)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-C
T ss_pred CCCCCCCEEEEECCCcCHHHHHHHHHC---------CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c-C
Confidence 456789999999999999999998873 3578999999 99999999999888875 78888887653 1 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++.-. ...|.. ....++|.++.++|+|||+|+
T Consensus 246 ---------------------~~~~D~v~~~~v-------------l~~~~~-------~~~~~~l~~~~~~L~pgG~l~ 284 (374)
T 1qzz_A 246 ---------------------PVTADVVLLSFV-------------LLNWSD-------EDALTILRGCVRALEPGGRLL 284 (374)
T ss_dssp ---------------------SCCEEEEEEESC-------------GGGSCH-------HHHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCCCCEEEEecc-------------ccCCCH-------HHHHHHHHHHHHhcCCCcEEE
Confidence 023999998321 112211 123578999999999999999
Q ss_pred EEcC
Q 004787 233 YSTC 236 (730)
Q Consensus 233 YSTC 236 (730)
....
T Consensus 285 i~e~ 288 (374)
T 1qzz_A 285 VLDR 288 (374)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8766
No 211
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.44 E-value=2e-07 Score=93.13 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=77.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~ 155 (730)
.+.++|||++||.|..+..++.. .|...|+|+|+|...++.+++++.++|.. ++.+ .|...
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~---------~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~------- 109 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNE---------NEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKES------- 109 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCS---------SCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHH-------
T ss_pred CCCCeEEEecCCCCHHHHHHHhc---------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccc-------
Confidence 55789999999999988877543 24569999999999999999999999988 5666 22221
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE-EE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YS 234 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV-YS 234 (730)
......||.||+ .+...+...+...+.+.++.|+|||.+| +=
T Consensus 110 ---------------~~~~~~~DvVLa----------------------~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 110 ---------------DVYKGTYDVVFL----------------------LKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ---------------HHTTSEEEEEEE----------------------ETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred ---------------cCCCCCcChhhH----------------------hhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 012367999997 1112222334456678999999998877 33
Q ss_pred cCCC
Q 004787 235 TCSM 238 (730)
Q Consensus 235 TCSl 238 (730)
|-|+
T Consensus 153 tksl 156 (200)
T 3fzg_A 153 IKSL 156 (200)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 4455
No 212
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.44 E-value=4.3e-07 Score=94.59 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=77.5
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEE--EEEeCCHHHHHHHHHHHHHc-CCCceEEEe--cccccCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMV--IANDLDVQRCNLLIHQTKRM-CTANLIVTN--HEAQHFP 150 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~V--vAnD~d~~Rl~~L~~nlkRl-g~~nv~vt~--~Da~~fp 150 (730)
+.++.+|||+|||+|..|..++..+... .+...| +|+|.++.++..+++++... +..++.+.. .++..++
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~-----~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~ 124 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQ-----YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQ 124 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHH-----STTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhh-----CCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhh
Confidence 4678899999999999888777665421 124544 99999999999999887654 455655543 3332211
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
.-. ........||.|++- .++..-++ ..+.|.+..++|||||+
T Consensus 125 ~~~---------------~~~~~~~~fD~V~~~------~~l~~~~d----------------~~~~l~~~~r~LkpgG~ 167 (292)
T 2aot_A 125 SRM---------------LEKKELQKWDFIHMI------QMLYYVKD----------------IPATLKFFHSLLGTNAK 167 (292)
T ss_dssp HHH---------------HTTTCCCCEEEEEEE------SCGGGCSC----------------HHHHHHHHHHTEEEEEE
T ss_pred hhh---------------ccccCCCceeEEEEe------eeeeecCC----------------HHHHHHHHHHHcCCCcE
Confidence 000 000123679999971 11111111 24578899999999999
Q ss_pred EEEEcCC
Q 004787 231 IVYSTCS 237 (730)
Q Consensus 231 LVYSTCS 237 (730)
++.++.+
T Consensus 168 l~i~~~~ 174 (292)
T 2aot_A 168 MLIIVVS 174 (292)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9988544
No 213
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.43 E-value=1.7e-06 Score=90.22 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=72.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHH-----HHcCCC-----ceEEEec
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQT-----KRMCTA-----NLIVTNH 144 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nl-----kRlg~~-----nv~vt~~ 144 (730)
..++.+|||+|||+|..+..++.. + .+.|+|+|+ ++..+..+++|+ +..+.. ++.+...
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~---------~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~ 146 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-G---------ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY 146 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-T---------CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred hcCCCeEEEecccccHHHHHHHHc-C---------CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence 457889999999999998877653 1 358999999 899999999999 444442 5555544
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEe-cCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHh
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGIS 223 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~-DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~ 223 (730)
+...... .+ ........||.|++ |+... ......++..+.+
T Consensus 147 ~~~~~~~-~~--------------~~~~~~~~fD~Ii~~dvl~~-----------------------~~~~~~ll~~l~~ 188 (281)
T 3bzb_A 147 RWGDSPD-SL--------------QRCTGLQRFQVVLLADLLSF-----------------------HQAHDALLRSVKM 188 (281)
T ss_dssp CTTSCTH-HH--------------HHHHSCSSBSEEEEESCCSC-----------------------GGGHHHHHHHHHH
T ss_pred cCCCccH-HH--------------HhhccCCCCCEEEEeCcccC-----------------------hHHHHHHHHHHHH
Confidence 3222100 00 00001367999987 65421 0113457788888
Q ss_pred hcc---C--CCEEEEEcCCCC
Q 004787 224 LLK---V--GGRIVYSTCSMN 239 (730)
Q Consensus 224 lLK---p--GGrLVYSTCSl~ 239 (730)
+|+ | ||+++.+.+...
T Consensus 189 ~Lk~~~p~~gG~l~v~~~~~~ 209 (281)
T 3bzb_A 189 LLALPANDPTAVALVTFTHHR 209 (281)
T ss_dssp HBCCTTTCTTCEEEEEECC--
T ss_pred HhcccCCCCCCEEEEEEEeee
Confidence 999 9 998766544443
No 214
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.43 E-value=3.1e-07 Score=97.16 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=89.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEecccccCCCc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~fp~~ 152 (730)
.++.+|||+|||.|+.+..++... +.+.|+++|+|+..+..+++++..+ ..+++.+...|+..++..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG---------TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh
Confidence 467899999999999998887541 2479999999999999999887432 346788999988765320
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|++|.+.. .+ +. ..| .+.+++..+.++|||||+|+
T Consensus 165 -------------------~~~~~fDvIi~d~~~~-~~-------------~~--~~l--~~~~~l~~~~~~LkpgG~lv 207 (304)
T 3bwc_A 165 -------------------TPDNTYDVVIIDTTDP-AG-------------PA--SKL--FGEAFYKDVLRILKPDGICC 207 (304)
T ss_dssp -------------------SCTTCEEEEEEECC---------------------------CCHHHHHHHHHHEEEEEEEE
T ss_pred -------------------ccCCceeEEEECCCCc-cc-------------cc--hhh--hHHHHHHHHHHhcCCCcEEE
Confidence 0126799999998621 01 00 001 13568889999999999999
Q ss_pred EEcCCC-CCCCcHHHHHHHHHHCC
Q 004787 233 YSTCSM-NPVENEAVVAEILRKCE 255 (730)
Q Consensus 233 YSTCSl-~p~ENEaVV~~~L~~~~ 255 (730)
..+.+. ...+...-+.+.|++.|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~G 231 (304)
T 3bwc_A 208 NQGESIWLDLELIEKMSRFIRETG 231 (304)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHT
T ss_pred EecCCcccchHHHHHHHHHHHhCC
Confidence 875442 22223344455566553
No 215
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.42 E-value=1e-06 Score=92.56 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=82.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-------CCCceEEEecccccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-------CTANLIVTNHEAQHF 149 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-------g~~nv~vt~~Da~~f 149 (730)
.++.+|||+|||+|..+..+++. +...|+++|+++..+..++++.... +..++.+...|+..+
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 102 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG----------RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE 102 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccccc
Confidence 47889999999999999888763 2468999999999999999888765 345788888888775
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
+... +.......||.|++.- ++ .|...+ ......+|..+.++|||||
T Consensus 103 ~~~~---------------~~~~~~~~fD~V~~~~------~l--------~~~~~~----~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 103 LLID---------------KFRDPQMCFDICSCQF------VC--------HYSFES----YEQADMMLRNACERLSPGG 149 (313)
T ss_dssp CSTT---------------TCSSTTCCEEEEEEET------CG--------GGGGGS----HHHHHHHHHHHHTTEEEEE
T ss_pred chhh---------------hcccCCCCEEEEEEec------ch--------hhccCC----HHHHHHHHHHHHHHhCCCc
Confidence 4100 0001124799999722 11 111000 1223578999999999999
Q ss_pred EEEEEcCCC
Q 004787 230 RIVYSTCSM 238 (730)
Q Consensus 230 rLVYSTCSl 238 (730)
+++.+|...
T Consensus 150 ~li~~~~~~ 158 (313)
T 3bgv_A 150 YFIGTTPNS 158 (313)
T ss_dssp EEEEEEECH
T ss_pred EEEEecCCh
Confidence 999987653
No 216
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.42 E-value=4.4e-07 Score=93.31 Aligned_cols=117 Identities=15% Similarity=-0.013 Sum_probs=73.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC------------------
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT------------------ 136 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~------------------ 136 (730)
.+.+|.+|||++||+|..+..++.. ....|+|+|+|+..+..++++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~----------~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~ 121 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD----------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNS 121 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG----------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCG
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh----------hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCC
Confidence 4567899999999999766554322 135799999999999999887654210
Q ss_pred -----------CceE-EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004787 137 -----------ANLI-VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (730)
Q Consensus 137 -----------~nv~-vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~ 204 (730)
.++. +...|......+ .......||.|++- .++..
T Consensus 122 ~~~~~~~~~~~~~i~~~~~~D~~~~~~~-----------------~~~~~~~fD~V~~~------~~l~~---------- 168 (263)
T 2a14_A 122 GRWEEKEEKLRAAVKRVLKCDVHLGNPL-----------------APAVLPLADCVLTL------LAMEC---------- 168 (263)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTT-----------------TTCCCCCEEEEEEE------SCHHH----------
T ss_pred cchhhHHHHHHhhhheEEeccccCCCCC-----------------CccccCCCCEeeeh------HHHHH----------
Confidence 0122 555655442110 00112579999971 11100
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...-..-..++|.+..++|||||+++.++.
T Consensus 169 --i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 169 --ACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp --HCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --hcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 000012235689999999999999999964
No 217
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.41 E-value=4.6e-07 Score=96.35 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=92.1
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEecccccCCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----CTANLIVTNHEAQHFPG 151 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----g~~nv~vt~~Da~~fp~ 151 (730)
..+.+|||+|||.|+.+..++... +...|+++|+|+..+..+++++..+ ..+++.+...|+..+..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 146 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP---------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE 146 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH
Confidence 345799999999999988886542 2479999999999999999987652 24678999998876421
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|++|++... + + ..| ...+ ...+++..+.++|+|||+|
T Consensus 147 --------------------~~~~~fD~Ii~d~~~~~-~-~-~~~----------~~~l--~~~~~l~~~~~~LkpgG~l 191 (314)
T 1uir_A 147 --------------------RTEERYDVVIIDLTDPV-G-E-DNP----------ARLL--YTVEFYRLVKAHLNPGGVM 191 (314)
T ss_dssp --------------------HCCCCEEEEEEECCCCB-S-T-TCG----------GGGG--SSHHHHHHHHHTEEEEEEE
T ss_pred --------------------hcCCCccEEEECCCCcc-c-c-cCc----------chhc--cHHHHHHHHHHhcCCCcEE
Confidence 01257999999986321 0 0 000 0011 1356788999999999999
Q ss_pred EEEcCCCC--CCCcHHHHHHHHHHCCCcEEE
Q 004787 232 VYSTCSMN--PVENEAVVAEILRKCEGSVEL 260 (730)
Q Consensus 232 VYSTCSl~--p~ENEaVV~~~L~~~~~~vel 260 (730)
+..+.+.. ..+.-.-+.+.|++.-..+.+
T Consensus 192 v~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 222 (314)
T 1uir_A 192 GMQTGMILLTHHRVHPVVHRTVREAFRYVRS 222 (314)
T ss_dssp EEEEEEECC---CHHHHHHHHHHTTCSEEEE
T ss_pred EEEccCccccCHHHHHHHHHHHHHHCCceEE
Confidence 98765532 112223344455554333433
No 218
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=98.41 E-value=3.2e-06 Score=89.05 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~ 155 (730)
.++.+|||+|||+|..+..+++.. |...++++|++ ..+..+++++.+.+.. ++.+..+|....+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN---------PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---- 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC---------TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC----
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC---------CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC----
Confidence 788999999999999999998874 35799999999 9999999999888875 58888888765321
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...||.|++-- +...|. .....++|.++.++|+|||+++...
T Consensus 230 ------------------~~~~D~v~~~~-------------~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 230 ------------------GNDYDLVLLPN-------------FLHHFD-------VATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp ------------------CSCEEEEEEES-------------CGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEcc-------------hhccCC-------HHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 13499999811 111121 1234678999999999999998876
Q ss_pred CCCC
Q 004787 236 CSMN 239 (730)
Q Consensus 236 CSl~ 239 (730)
....
T Consensus 272 ~~~~ 275 (335)
T 2r3s_A 272 FIPN 275 (335)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 6554
No 219
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.40 E-value=5.9e-07 Score=90.83 Aligned_cols=135 Identities=14% Similarity=0.014 Sum_probs=86.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-------------------
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT------------------- 136 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~------------------- 136 (730)
..++.+|||++||+|..+..++.. ....|+++|+++..+..+++++...+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACE----------SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRM 123 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGG----------TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCS
T ss_pred ccCCCEEEEECCCccHHHHHHhhc----------ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccccccc
Confidence 357889999999999887776543 124899999999999999887654321
Q ss_pred ----------Cce-EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004787 137 ----------ANL-IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (730)
Q Consensus 137 ----------~nv-~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~ 205 (730)
.++ .+...|+...+... ......||.|++-- ++. .
T Consensus 124 ~~~~~~~~l~~~v~~~~~~d~~~~~~~~-----------------~~~~~~fD~v~~~~------~l~-------~---- 169 (265)
T 2i62_A 124 KGPEKEEKLRRAIKQVLKCDVTQSQPLG-----------------GVSLPPADCLLSTL------CLD-------A---- 169 (265)
T ss_dssp CHHHHHHHHHHHEEEEEECCTTSSSTTT-----------------TCCCCCEEEEEEES------CHH-------H----
T ss_pred chHHHHHHhhhhheeEEEeeeccCCCCC-----------------ccccCCccEEEEhh------hhh-------h----
Confidence 015 67777776542110 01126799999721 110 0
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEEcCCC------------CCCCcHHHHHHHHHHCC
Q 004787 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM------------NPVENEAVVAEILRKCE 255 (730)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl------------~p~ENEaVV~~~L~~~~ 255 (730)
...-......+|.++.++|||||+|+.++..- ...-+++-+..+|++.|
T Consensus 170 -~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 230 (265)
T 2i62_A 170 -ACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAG 230 (265)
T ss_dssp -HCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT
T ss_pred -hcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCC
Confidence 00011234678999999999999999886321 01124555666666655
No 220
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.40 E-value=4.4e-07 Score=97.09 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=92.0
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
.+|||+|||.|+.+..+++.. |...|+++|+|+..+..+++++.....+++.+...|+..|..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~---------p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~-------- 153 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY---------PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE-------- 153 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS---------TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH--------
T ss_pred CEEEEEECCcCHHHHHHHHHC---------CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHh--------
Confidence 499999999999999988763 346899999999999999887654345679999999877521
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~ 239 (730)
......||.|++|++.. .+. +. .| ...+.+..+.++|+|||+||..+.+-.
T Consensus 154 -----------~~~~~~fDvIi~D~~~~-~~~----~~-----------~L--~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 154 -----------SFTPASRDVIIRDVFAG-AIT----PQ-----------NF--TTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp -----------TCCTTCEEEEEECCSTT-SCC----CG-----------GG--SBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred -----------hccCCCCCEEEECCCCc-ccc----ch-----------hh--hHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 01126799999997532 121 10 01 124678889999999999998876543
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEe
Q 004787 240 PVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 240 p~ENEaVV~~~L~~~~~~velvd 262 (730)
+.+.-.-+...|++.-..+.++.
T Consensus 205 ~~~~~~~~~~tL~~vF~~v~~~~ 227 (317)
T 3gjy_A 205 DLRGAKSELAGMMEVFEHVAVIA 227 (317)
T ss_dssp TCHHHHHHHHHHHHHCSEEEEEE
T ss_pred chHHHHHHHHHHHHHCCceEEEE
Confidence 22211223334444333455543
No 221
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.40 E-value=2.7e-07 Score=95.65 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=74.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+.+|||++||+|..|..|++. ...|+|+|+|+..+..++. .+++.+...++..+|.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~-----------~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~------ 95 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF-----------FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGL------ 95 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT-----------CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCC------
T ss_pred CCCCEEEEcCCCCHHHHHHHHh-----------CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcc------
Confidence 4579999999999988888654 3689999999987764421 3678888888877542
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
....||.|+|- .++ .|-. ..+.+.++.++|||||+|+..+.+
T Consensus 96 ---------------~~~sfD~v~~~------~~~--------h~~~---------~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 96 ---------------PPASVDVAIAA------QAM--------HWFD---------LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp ---------------CSSCEEEEEEC------SCC--------TTCC---------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------------cCCcccEEEEe------eeh--------hHhh---------HHHHHHHHHHHcCCCCEEEEEECC
Confidence 23689999971 111 1210 124678889999999999988877
Q ss_pred CCCC
Q 004787 238 MNPV 241 (730)
Q Consensus 238 l~p~ 241 (730)
....
T Consensus 138 ~~~~ 141 (257)
T 4hg2_A 138 LTRV 141 (257)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 6544
No 222
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.40 E-value=2.7e-07 Score=94.37 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=75.3
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
+.+.++.+|||+|||+|..+..+++. .+.|+++|+++..+..++.+. ++.+...|+..+|.
T Consensus 30 ~~~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~-- 90 (261)
T 3ege_A 30 LNLPKGSVIADIGAGTGGYSVALANQ-----------GLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLAL-- 90 (261)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHTT-----------TCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCS--
T ss_pred hCCCCCCEEEEEcCcccHHHHHHHhC-----------CCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCC--
Confidence 45678999999999999999988751 479999999997766443322 78888888876541
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
....||.|++-.. +.+-+ -...+|.++.++|| ||+++.
T Consensus 91 -------------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 91 -------------------PDKSVDGVISILA------IHHFS----------------HLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp -------------------CTTCBSEEEEESC------GGGCS----------------SHHHHHHHHHHHBC-SSCEEE
T ss_pred -------------------CCCCEeEEEEcch------Hhhcc----------------CHHHHHHHHHHHhC-CcEEEE
Confidence 1267999998321 11111 12468899999999 998888
Q ss_pred EcCC
Q 004787 234 STCS 237 (730)
Q Consensus 234 STCS 237 (730)
.++.
T Consensus 129 ~~~~ 132 (261)
T 3ege_A 129 LTFD 132 (261)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8765
No 223
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.39 E-value=4.5e-07 Score=102.10 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=88.4
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~ 153 (730)
...++.+|||+|||+|..+..+++. +...|+|+|++. .+..+++++++++. .++.+...|+..++.
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~----------~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-- 221 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQA----------GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-- 221 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHT----------TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--
T ss_pred hhcCCCEEEEecCcccHHHHHHHHc----------CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc--
Confidence 4467899999999999988877663 246999999998 88999999999987 579999988766421
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||+|+++++ +. .|. ......++..+.++|||||+|+.
T Consensus 222 --------------------~~~fD~Ivs~~~----~~---------~~~-------~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 222 --------------------PEQVDIIISEPM----GY---------MLF-------NERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp --------------------SSCEEEEECCCC----HH---------HHT-------CHHHHHHHHHGGGGEEEEEEEES
T ss_pred --------------------CCCeEEEEEeCc----hH---------hcC-------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 147999999665 10 010 01234566788899999999996
Q ss_pred EcCCC--CCCCcHHHHH
Q 004787 234 STCSM--NPVENEAVVA 248 (730)
Q Consensus 234 STCSl--~p~ENEaVV~ 248 (730)
+.+++ .|.+.+....
T Consensus 262 ~~~~~~~~pi~~~~l~~ 278 (480)
T 3b3j_A 262 TIGDVHLAPFTDEQLYM 278 (480)
T ss_dssp CEEEEEEEEECCHHHHH
T ss_pred EeceeeeeccCchHHHH
Confidence 65553 4566665543
No 224
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.39 E-value=7.5e-07 Score=90.69 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=76.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..++.. ...|+++|+++..+..+++++. ++.+...|+..++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~----- 107 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-----------FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL----- 107 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-----------SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-----
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-----
Confidence 46789999999999998888654 2589999999999988877532 67788888776542
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...||.|+|.. +++...++ ......+|.++.++|||||+|+.++.
T Consensus 108 -----------------~~~fD~v~~~~-----~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 108 -----------------GRRFSAVTCMF-----SSIGHLAG-------------QAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp -----------------SCCEEEEEECT-----TGGGGSCH-------------HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred -----------------cCCcCEEEEcC-----chhhhcCC-------------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 26799999732 12211110 12345789999999999999998744
No 225
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=98.38 E-value=1.8e-06 Score=98.42 Aligned_cols=187 Identities=16% Similarity=0.109 Sum_probs=118.1
Q ss_pred HHHHHHHhhc-----ccccCcEEEccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCC----CCCCeEE
Q 004787 44 LERFHKFLKL-----ENEIGNITRQEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG----ALPNGMV 114 (730)
Q Consensus 44 l~~~~~~l~~-----~~~~G~i~~Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~----~~p~G~V 114 (730)
+..+.+||.. ..+.|.++--..++-+.+.++++++|++|+|-|||+|++.+++++.+....... ......+
T Consensus 178 lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i 257 (530)
T 3ufb_A 178 LSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSI 257 (530)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhh
Confidence 4455555532 235677776666667778889999999999999999999999988876421000 0012469
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcccc
Q 004787 115 IANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 115 vAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
+++|+++....+++-|+--.|.....+...|...+|... .....+||.||.+||.++...
T Consensus 258 ~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~-----------------~~~~~~fD~Il~NPPf~~~~~--- 317 (530)
T 3ufb_A 258 FGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE-----------------MGDKDRVDVILTNPPFGGEEE--- 317 (530)
T ss_dssp EEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG-----------------CCGGGCBSEEEECCCSSCBCC---
T ss_pred hhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh-----------------hcccccceEEEecCCCCcccc---
Confidence 999999999999988887777655556666655443211 112367999999999976431
Q ss_pred ChhhhhhcccccccchHHHHHHHHHHHHhhcc-------CCCEEEEEcC--CCCCCCcHHHHHHHHHH
Q 004787 195 APDIWRKWNVGLGNGLHSLQVQIAMRGISLLK-------VGGRIVYSTC--SMNPVENEAVVAEILRK 253 (730)
Q Consensus 195 ~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK-------pGGrLVYSTC--Sl~p~ENEaVV~~~L~~ 253 (730)
.+.+..+... ......+...+.+++++|| +||++++.+- .+...-.+.-+.+.|-+
T Consensus 318 -~~~~~~~~~~--~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle 382 (530)
T 3ufb_A 318 -KGILGNFPED--MQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLK 382 (530)
T ss_dssp -HHHHTTSCGG--GCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred -ccccccCchh--cccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhh
Confidence 2222221110 1112234455667777776 7999887754 24333335556555544
No 226
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.36 E-value=5.2e-07 Score=96.24 Aligned_cols=115 Identities=15% Similarity=0.018 Sum_probs=81.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--C--CCceEEEecccccCCCc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--C--TANLIVTNHEAQHFPGC 152 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl--g--~~nv~vt~~Da~~fp~~ 152 (730)
..+.+|||+|||.|+.+..++... +.+.|+++|+|+..+..+++++..+ + .+++.+...|+..+..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~- 176 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE---------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK- 176 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT---------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH-
Confidence 345799999999999998886542 3579999999999999999987654 2 3578888888866321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
.....||.|++|++.. .+ +. -+-...+++..+.++|+|||+||
T Consensus 177 -------------------~~~~~fD~Ii~d~~~~-~~-------------~~----~~l~t~~~l~~~~~~LkpgG~lv 219 (314)
T 2b2c_A 177 -------------------NHKNEFDVIITDSSDP-VG-------------PA----ESLFGQSYYELLRDALKEDGILS 219 (314)
T ss_dssp -------------------HCTTCEEEEEECCC-------------------------------HHHHHHHHEEEEEEEE
T ss_pred -------------------hcCCCceEEEEcCCCC-CC-------------cc----hhhhHHHHHHHHHhhcCCCeEEE
Confidence 0125799999998621 11 00 01122678899999999999999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
..+.+.
T Consensus 220 ~~~~~~ 225 (314)
T 2b2c_A 220 SQGESV 225 (314)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 987554
No 227
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=98.35 E-value=7.3e-06 Score=86.79 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=84.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~ 153 (730)
+..++.+|||++||+|..+..+++.. |...++++|+ +..+..++.++...+. .++.+..+|... + +
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~- 232 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAH---------EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-P-L- 232 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-C-
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHC---------CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-C-C-
Confidence 45667899999999999999998874 3578999999 9999999999888876 568888887642 1 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++- .++..|.. ..+.++|+++.+.|+|||+|+.
T Consensus 233 --------------------p~~~D~v~~~-------------~vlh~~~~-------~~~~~~l~~~~~~L~pgG~l~i 272 (332)
T 3i53_A 233 --------------------PAGAGGYVLS-------------AVLHDWDD-------LSAVAILRRCAEAAGSGGVVLV 272 (332)
T ss_dssp --------------------CCSCSEEEEE-------------SCGGGSCH-------HHHHHHHHHHHHHHTTTCEEEE
T ss_pred --------------------CCCCcEEEEe-------------hhhccCCH-------HHHHHHHHHHHHhcCCCCEEEE
Confidence 1269999971 12222321 2346899999999999999998
Q ss_pred EcCCCC
Q 004787 234 STCSMN 239 (730)
Q Consensus 234 STCSl~ 239 (730)
....+.
T Consensus 273 ~e~~~~ 278 (332)
T 3i53_A 273 IEAVAG 278 (332)
T ss_dssp EECCCC
T ss_pred EeecCC
Confidence 766543
No 228
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.35 E-value=4.1e-07 Score=100.50 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=67.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEecccccCCCccc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--CTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl--g~~nv~vt~~Da~~fp~~~~ 154 (730)
.+|.+|||+|||+|..+..++.. .+.|+|+|+|+.++.++++|++++ |..++.+.+.|+..+...
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-----------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-- 158 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-----------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-- 158 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH--
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh--
Confidence 35899999999999999887654 368999999999999999999998 888899999998764210
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCC
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
.....||.|++|||..+.
T Consensus 159 -----------------~~~~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 159 -----------------IKTFHPDYIYVDPARRSG 176 (410)
T ss_dssp -----------------HHHHCCSEEEECCEEC--
T ss_pred -----------------ccCCCceEEEECCCCcCC
Confidence 012479999999997764
No 229
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.34 E-value=6.5e-07 Score=105.49 Aligned_cols=192 Identities=13% Similarity=0.017 Sum_probs=109.6
Q ss_pred HHHHHhhcc-cccCcEEEccccccchhhc----cC--CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004787 46 RFHKFLKLE-NEIGNITRQEAVSMVPPLF----LD--VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (730)
Q Consensus 46 ~~~~~l~~~-~~~G~i~~Qd~~Smlp~ll----Ld--~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD 118 (730)
.+++|.... ...|.++--...+.+.+.+ +. ..++.+|||.|||+|+..+.++..+... ....++|+|
T Consensus 282 ll~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei------~~~~IyGvE 355 (878)
T 3s1s_A 282 LIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNV------MPRQIWAND 355 (878)
T ss_dssp HHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTC------CGGGEEEEC
T ss_pred HHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhccc------CCCeEEEEE
Confidence 345554332 3456655544433333333 32 3468999999999999999988765321 135799999
Q ss_pred CCHHHHHHH--HHHHHH----cCCCceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 119 LDVQRCNLL--IHQTKR----MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 119 ~d~~Rl~~L--~~nlkR----lg~~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
+++..+.++ +.++.. .+..+..+...|..... ......||.|+++||.++....
T Consensus 356 IDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~--------------------~~~~~kFDVVIgNPPYg~~~~~ 415 (878)
T 3s1s_A 356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN--------------------PEDFANVSVVVMNPPYVSGVTD 415 (878)
T ss_dssp SCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC--------------------GGGGTTEEEEEECCBCCSSCCC
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc--------------------ccccCCCCEEEECCCccccccc
Confidence 999999888 444432 12233233333322210 1123679999999999764432
Q ss_pred ccC-hhhhhhcc------cccccchHHHHHHHHHHHHhhccCCCEEEEEcCC-CC--CCCcHHHHHHHHHHCCCcEEEEe
Q 004787 193 RKA-PDIWRKWN------VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MN--PVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 193 rk~-pd~~~~w~------~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS-l~--p~ENEaVV~~~L~~~~~~velvd 262 (730)
... .+....+. +....+...+...++.+|+++|++||++++.+-+ +. ......-+.+.|-+...-..+++
T Consensus 416 ~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~~I~aIId 495 (878)
T 3s1s_A 416 PAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNFGLEHIFL 495 (878)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTTCEEEEEE
T ss_pred hhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCCCeEEEEE
Confidence 211 11111110 1111222346777999999999999999987544 22 11224556666654433345555
Q ss_pred c
Q 004787 263 V 263 (730)
Q Consensus 263 ~ 263 (730)
+
T Consensus 496 L 496 (878)
T 3s1s_A 496 Y 496 (878)
T ss_dssp C
T ss_pred C
Confidence 4
No 230
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.33 E-value=1.2e-06 Score=85.86 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=73.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..+ + ...|+++|+++..+..++++. .++.+...|+..+|.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~--------~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~------ 91 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----P--------YPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF------ 91 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----C--------CSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS------
T ss_pred CCCeEEEECCCCCHhHHhC-----C--------CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC------
Confidence 7889999999999987765 2 138999999999998887654 567777777766431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
....||.|++.. ++...+ ...++|..+.++|||||+++.++..
T Consensus 92 ---------------~~~~fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 92 ---------------PGESFDVVLLFT------TLEFVE----------------DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp ---------------CSSCEEEEEEES------CTTTCS----------------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------------CCCcEEEEEEcC------hhhhcC----------------CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 125799999742 121111 1246889999999999999998754
Q ss_pred C
Q 004787 238 M 238 (730)
Q Consensus 238 l 238 (730)
-
T Consensus 135 ~ 135 (211)
T 2gs9_A 135 A 135 (211)
T ss_dssp T
T ss_pred C
Confidence 3
No 231
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=98.32 E-value=6.4e-06 Score=88.80 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=83.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~~~ 155 (730)
....+|||++||+|..+..+++.. |...++++|+ +..+..++.++...+. .++.+..+|......
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 243 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN---------KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV---- 243 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS---------TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC----
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC---------CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC----
Confidence 456899999999999999998873 4578999999 9999999888877775 468888888765210
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.. ...||.|++-- +...|.. ....++|+++.+.|||||+|+...
T Consensus 244 ---------------~~-p~~~D~v~~~~-------------vlh~~~~-------~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 244 ---------------PF-PTGFDAVWMSQ-------------FLDCFSE-------EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp ---------------CC-CCCCSEEEEES-------------CSTTSCH-------HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ---------------CC-CCCcCEEEEec-------------hhhhCCH-------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 00 15699999711 1112221 123578999999999999999877
Q ss_pred CCCCC
Q 004787 236 CSMNP 240 (730)
Q Consensus 236 CSl~p 240 (730)
..+..
T Consensus 288 ~~~~~ 292 (363)
T 3dp7_A 288 TLWDR 292 (363)
T ss_dssp CCTTS
T ss_pred eccCC
Confidence 65544
No 232
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=98.32 E-value=9.4e-06 Score=86.70 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=84.0
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~ 152 (730)
+++.++.+|||+|||+|..+..+++.. +...++++|+ +..+..++++++..+.. ++.+..+|.... +
T Consensus 179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~ 246 (360)
T 1tw3_A 179 YDWTNVRHVLDVGGGKGGFAAAIARRA---------PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--L 246 (360)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--C
T ss_pred CCCccCcEEEEeCCcCcHHHHHHHHhC---------CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC--C
Confidence 466788999999999999999998863 3578999999 99999999999888875 788888876431 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++.-. ...|.. ....++|.++.++|+|||+|+
T Consensus 247 ---------------------~~~~D~v~~~~v-------------l~~~~~-------~~~~~~l~~~~~~L~pgG~l~ 285 (360)
T 1tw3_A 247 ---------------------PRKADAIILSFV-------------LLNWPD-------HDAVRILTRCAEALEPGGRIL 285 (360)
T ss_dssp ---------------------SSCEEEEEEESC-------------GGGSCH-------HHHHHHHHHHHHTEEEEEEEE
T ss_pred ---------------------CCCccEEEEccc-------------ccCCCH-------HHHHHHHHHHHHhcCCCcEEE
Confidence 124999997321 112211 122578999999999999999
Q ss_pred EEcCC
Q 004787 233 YSTCS 237 (730)
Q Consensus 233 YSTCS 237 (730)
.+...
T Consensus 286 i~e~~ 290 (360)
T 1tw3_A 286 IHERD 290 (360)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 87665
No 233
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=98.28 E-value=6.8e-06 Score=88.11 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=85.6
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~ 152 (730)
++..++.+|||+|||+|..+..+++.. |...++++|+ +..+..++.++++.+..+ +.+..+|+...+.
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 254 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY- 254 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHC---------TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHC---------CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-
Confidence 456788999999999999999998873 3578999999 999999999999888765 8888888765321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
..+|.|++.- +...|.. ....++|+++.++|||||+|+
T Consensus 255 ----------------------~~~D~v~~~~-------------vlh~~~d-------~~~~~~l~~~~~~L~pgG~l~ 292 (359)
T 1x19_A 255 ----------------------PEADAVLFCR-------------ILYSANE-------QLSTIMCKKAFDAMRSGGRLL 292 (359)
T ss_dssp ----------------------CCCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHTTCCTTCEEE
T ss_pred ----------------------CCCCEEEEec-------------hhccCCH-------HHHHHHHHHHHHhcCCCCEEE
Confidence 2249998721 1122221 234678999999999999998
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
......
T Consensus 293 i~e~~~ 298 (359)
T 1x19_A 293 ILDMVI 298 (359)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 776554
No 234
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.26 E-value=2.3e-06 Score=87.32 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
++.+|||+|||+|..+..+++. ...|+++|+++..+..++.+.. .+ +...|+..++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~------ 110 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-----------GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPF------ 110 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-----------TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCS------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-----------CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCC------
Confidence 7889999999999999888764 3589999999999988876543 22 55566655431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
....||.|++... + ..|.. -...+|.++.++|||||+|+.++.+
T Consensus 111 ---------------~~~~fD~v~~~~~------~-------~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 111 ---------------PSGAFEAVLALGD------V-------LSYVE--------NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp ---------------CTTCEEEEEECSS------H-------HHHCS--------CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ---------------CCCCEEEEEEcch------h-------hhccc--------cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 1267999997321 0 11111 1356889999999999999998765
Q ss_pred C
Q 004787 238 M 238 (730)
Q Consensus 238 l 238 (730)
.
T Consensus 155 ~ 155 (260)
T 2avn_A 155 F 155 (260)
T ss_dssp H
T ss_pred h
Confidence 3
No 235
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.25 E-value=1.1e-06 Score=89.65 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=73.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||++||+|..+..+++.+. .+.|+++|+++.++..++.+. .++.+...|+..+|.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~---------~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~----- 144 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP---------EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF----- 144 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT---------TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC-----
Confidence 6789999999999999999987642 468999999999998876643 456777777765431
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
....||.|++... + ..+..+.++|||||+++.++.
T Consensus 145 ----------------~~~~fD~v~~~~~------------------~-----------~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 145 ----------------SDTSMDAIIRIYA------------------P-----------CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp ----------------CTTCEEEEEEESC------------------C-----------CCHHHHHHHEEEEEEEEEEEE
T ss_pred ----------------CCCceeEEEEeCC------------------h-----------hhHHHHHHhcCCCcEEEEEEc
Confidence 1257999997211 0 125777889999999999875
Q ss_pred CC
Q 004787 237 SM 238 (730)
Q Consensus 237 Sl 238 (730)
..
T Consensus 180 ~~ 181 (269)
T 1p91_A 180 GP 181 (269)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 236
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.24 E-value=7.1e-06 Score=89.83 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=71.4
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCC------------------------------CCCCeEEEEEeCCHH
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG------------------------------ALPNGMVIANDLDVQ 122 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~------------------------------~~p~G~VvAnD~d~~ 122 (730)
+++..++..|||.|||+|..++.+|.+..+.. ++ ..+...|+|+|+|+.
T Consensus 190 ~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~a-pg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ 268 (385)
T 3ldu_A 190 LTPWKAGRVLVDPMCGSGTILIEAAMIGINMA-PGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE 268 (385)
T ss_dssp TSCCCTTSCEEETTCTTCHHHHHHHHHHTTCC-TTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH
T ss_pred hhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhC-CCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH
Confidence 45678899999999999999999887643210 00 012357999999999
Q ss_pred HHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 123 RCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 123 Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
.+..++.|+++.|.. ++.+.+.|+..++. ...||.|++|||.
T Consensus 269 ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~----------------------~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 269 SIDIARENAEIAGVDEYIEFNVGDATQFKS----------------------EDEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEECCGGGCCC----------------------SCBSCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCceEEEECChhhcCc----------------------CCCCcEEEECCCC
Confidence 999999999999986 68899998877542 1479999999994
No 237
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.23 E-value=2.9e-06 Score=87.96 Aligned_cols=141 Identities=14% Similarity=0.027 Sum_probs=83.9
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----------------CC---
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----------------CT--- 136 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----------------g~--- 136 (730)
.++.+|||+|||+|. +..++.... ...|+|+|+++..+..++.+++.. +.
T Consensus 70 ~~~~~vLDiGcG~G~-~~~l~~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 139 (289)
T 2g72_A 70 VSGRTLIDIGSGPTV-YQLLSACSH---------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 139 (289)
T ss_dssp SCCSEEEEETCTTCC-GGGTTGGGG---------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred CCCCeEEEECCCcCh-HHHHhhccC---------CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccc
Confidence 378899999999999 443332211 358999999999999887754321 10
Q ss_pred ----------CceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccc
Q 004787 137 ----------ANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVG 205 (730)
Q Consensus 137 ----------~nv~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~ 205 (730)
..+.+...|+.. .|. . +.......||.|++-. ++. |-..
T Consensus 140 ~~~~~~~~~~~~~~~~~~D~~~~~~~-~---------------~~~~~~~~fD~V~~~~------~l~--------~~~~ 189 (289)
T 2g72_A 140 WQDKERQLRARVKRVLPIDVHQPQPL-G---------------AGSPAPLPADALVSAF------CLE--------AVSP 189 (289)
T ss_dssp HHHHHHHHHHHEEEEECCCTTSSSTT-C---------------SSCSSCSSEEEEEEES------CHH--------HHCS
T ss_pred hhhhHHHHHhhhceEEecccCCCCCc-c---------------ccccCCCCCCEEEehh------hhh--------hhcC
Confidence 013455556654 221 0 0011235699999721 110 0000
Q ss_pred cccchHHHHHHHHHHHHhhccCCCEEEEEcCCC------------CCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 206 LGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM------------NPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 206 ~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl------------~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
. ..-..++|.++.++|||||+|+.+...- ...-+++-+..+|++.| |+++.+
T Consensus 190 ~----~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG--f~~~~~ 253 (289)
T 2g72_A 190 D----LASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG--YKVRDL 253 (289)
T ss_dssp S----HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT--EEEEEE
T ss_pred C----HHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcC--CeEEEe
Confidence 0 1234678999999999999999864210 11124566778888876 555554
No 238
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.23 E-value=8.8e-06 Score=89.16 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=71.3
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCC------------------------------CCCCeEEEEEeCCHH
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG------------------------------ALPNGMVIANDLDVQ 122 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~------------------------------~~p~G~VvAnD~d~~ 122 (730)
+.+.+++..|||.|||+|...+.+|.+..+.. ++ ......|+|+|+|+.
T Consensus 189 l~~~~~~~~llDp~CGSGt~lIEAa~~a~~ia-pg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~ 267 (384)
T 3ldg_A 189 LSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIA-PGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR 267 (384)
T ss_dssp HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCC-TTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcC-CCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH
Confidence 44678899999999999999988877654210 00 011356999999999
Q ss_pred HHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 123 RCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 123 Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
.+..++.|+++.|..+ +.+.+.|+..++. ...||.|++|||.
T Consensus 268 al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~----------------------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 268 MVEIARKNAREVGLEDVVKLKQMRLQDFKT----------------------NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEECCGGGCCC----------------------CCCSCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCceEEEECChHHCCc----------------------cCCcCEEEECCch
Confidence 9999999999999865 8899999887542 1479999999995
No 239
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.22 E-value=4.9e-06 Score=91.41 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=71.6
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCC------------------------------CCCCeEEEEEeCCH
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPG------------------------------ALPNGMVIANDLDV 121 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~------------------------------~~p~G~VvAnD~d~ 121 (730)
.+.+..++..|||.|||+|..++.+|.+..+.. ++ ..+...|+++|+|+
T Consensus 195 ~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~a-pg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~ 273 (393)
T 3k0b_A 195 LLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIA-PGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDA 273 (393)
T ss_dssp HHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCC-TTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred HHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcC-CCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCH
Confidence 345678899999999999999988877654210 00 01235699999999
Q ss_pred HHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 122 QRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 122 ~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
..+..++.|+++.|..+ +.+...|+..++. ...||.|++|||.
T Consensus 274 ~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~----------------------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 274 RLIEIAKQNAVEAGLGDLITFRQLQVADFQT----------------------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEECCGGGCCC----------------------CCCSCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChHhCCC----------------------CCCCCEEEECCCC
Confidence 99999999999999864 8889998877542 1479999999995
No 240
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=98.20 E-value=2.5e-05 Score=84.31 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=86.1
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~ 152 (730)
++..++.+|||++||+|..+..+++.. |...++++|+ +..+..++.++...+. .++.+..+|... + +
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~-~ 265 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAF---------PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-T-I 265 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-C-C
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHC---------CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-C-C
Confidence 456788999999999999999998873 4578999999 9999999999888875 568888887652 1 0
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...||.|++-- ++..|.. ....++|+++.+.|+|||+|+
T Consensus 266 ---------------------p~~~D~v~~~~-------------vlh~~~d-------~~~~~~L~~~~~~L~pgG~l~ 304 (369)
T 3gwz_A 266 ---------------------PDGADVYLIKH-------------VLHDWDD-------DDVVRILRRIATAMKPDSRLL 304 (369)
T ss_dssp ---------------------CSSCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHTTCCTTCEEE
T ss_pred ---------------------CCCceEEEhhh-------------hhccCCH-------HHHHHHHHHHHHHcCCCCEEE
Confidence 12699999721 1222321 223579999999999999999
Q ss_pred EEcCCCCC
Q 004787 233 YSTCSMNP 240 (730)
Q Consensus 233 YSTCSl~p 240 (730)
.....+..
T Consensus 305 i~e~~~~~ 312 (369)
T 3gwz_A 305 VIDNLIDE 312 (369)
T ss_dssp EEEEBCCS
T ss_pred EEEeccCC
Confidence 87665544
No 241
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.20 E-value=4.6e-06 Score=98.63 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=84.5
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeccccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM------CTANLIVTNHEAQH 148 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl------g~~nv~vt~~Da~~ 148 (730)
...++.+|||+|||+|..+..|++... +.+.|+|+|+++..+..++++++.. +..++.+..+|+..
T Consensus 718 ~~~~g~rVLDVGCGTG~lai~LAr~g~--------p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 718 RESSASTLVDFGCGSGSLLDSLLDYPT--------SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHSCCSEEEEETCSSSHHHHHHTSSCC--------CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred cccCCCEEEEECCCCCHHHHHHHHhCC--------CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 445899999999999999888865421 2369999999999999998877643 56789999999887
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
++. ....||.|++. +++.+-++ .....++..+.++||||
T Consensus 790 Lp~---------------------~d~sFDlVV~~------eVLeHL~d--------------p~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 790 FDS---------------------RLHDVDIGTCL------EVIEHMEE--------------DQACEFGEKVLSLFHPK 828 (950)
T ss_dssp CCT---------------------TSCSCCEEEEE------SCGGGSCH--------------HHHHHHHHHHHHTTCCS
T ss_pred CCc---------------------ccCCeeEEEEe------CchhhCCh--------------HHHHHHHHHHHHHcCCC
Confidence 542 12679999982 23322221 12246788999999998
Q ss_pred CEEEEEcCCC
Q 004787 229 GRIVYSTCSM 238 (730)
Q Consensus 229 GrLVYSTCSl 238 (730)
.++.+|+..
T Consensus 829 -~LIISTPN~ 837 (950)
T 3htx_A 829 -LLIVSTPNY 837 (950)
T ss_dssp -EEEEEECBG
T ss_pred -EEEEEecCc
Confidence 888887653
No 242
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.19 E-value=2.9e-06 Score=92.76 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=83.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~ 155 (730)
-+|.+|||++||+|-.+..+|++ +..+|+|+|.++ .+..++++++.+|.. .|.+...+...+..
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a----------GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l---- 146 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA----------GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL---- 146 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC----
T ss_pred cCCCEEEEeCCCccHHHHHHHHh----------CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC----
Confidence 36889999999999887766553 246899999996 678888888888875 48888888766421
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
+.+||+|++..- |.+.+. . .....++...-++|||||+++-+.
T Consensus 147 ------------------pe~~DvivsE~~--~~~l~~--------------e---~~l~~~l~a~~r~Lkp~G~~iP~~ 189 (376)
T 4hc4_A 147 ------------------PEQVDAIVSEWM--GYGLLH--------------E---SMLSSVLHARTKWLKEGGLLLPAS 189 (376)
T ss_dssp ------------------SSCEEEEECCCC--BTTBTT--------------T---CSHHHHHHHHHHHEEEEEEEESCE
T ss_pred ------------------CccccEEEeecc--cccccc--------------c---chhhhHHHHHHhhCCCCceECCcc
Confidence 267999998542 222110 0 011335555668999999999887
Q ss_pred CCC--CCCCcHHH
Q 004787 236 CSM--NPVENEAV 246 (730)
Q Consensus 236 CSl--~p~ENEaV 246 (730)
|++ .|+|.+..
T Consensus 190 atly~apie~~~l 202 (376)
T 4hc4_A 190 AELFIVPISDQML 202 (376)
T ss_dssp EEEEEEEECCHHH
T ss_pred ceEEEEEeccchh
Confidence 774 47787644
No 243
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.19 E-value=2.8e-06 Score=88.28 Aligned_cols=111 Identities=12% Similarity=-0.034 Sum_probs=79.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEecccccCCCcc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR----MCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR----lg~~nv~vt~~Da~~fp~~~ 153 (730)
.+.+|||+|||.|+.+..++.. + +.|+++|+|+..+..+++++.. +..+++.+...|+..+.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~----------~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--- 137 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY----------D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--- 137 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS----------S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---
T ss_pred CCCEEEEEeCCcCHHHHHHHhC----------C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---
Confidence 3579999999999987776542 3 6899999999999988876533 23457888888876642
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
..||.|++|.+ +|. ..+..+.++|+|||++|.
T Consensus 138 ---------------------~~fD~Ii~d~~---------dp~------------------~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 138 ---------------------KKYDLIFCLQE---------PDI------------------HRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp ---------------------CCEEEEEESSC---------CCH------------------HHHHHHHTTEEEEEEEEE
T ss_pred ---------------------hhCCEEEECCC---------ChH------------------HHHHHHHHhcCCCcEEEE
Confidence 46999999853 111 167788999999999999
Q ss_pred EcCCCCCCCcHHHHHHHHH
Q 004787 234 STCSMNPVENEAVVAEILR 252 (730)
Q Consensus 234 STCSl~p~ENEaVV~~~L~ 252 (730)
.+++.. -+...+..+++
T Consensus 170 ~~~~~~--~~~~~~~~~~~ 186 (262)
T 2cmg_A 170 VAKHPL--LEHVSMQNALK 186 (262)
T ss_dssp EEECTT--TCHHHHHHHHH
T ss_pred EcCCcc--cCHHHHHHHHH
Confidence 865532 23334444443
No 244
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=98.18 E-value=1.2e-05 Score=84.96 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~~ 153 (730)
+..+ .+|||+|||+|..+..+++.. |...++++|+ +..+..+++++.+.+. .++.+..+|... + +
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~- 230 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAE---------PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-V- 230 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHC---------TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-C-
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHC---------CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-C-
Confidence 5556 899999999999999998873 3578999999 9999999888877664 468888887644 1 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|++-- ++..|.. ....++|+++.+.|+|||+|+.
T Consensus 231 --------------------~~~~D~v~~~~-------------vl~~~~~-------~~~~~~l~~~~~~L~pgG~l~i 270 (334)
T 2ip2_A 231 --------------------PSNGDIYLLSR-------------IIGDLDE-------AASLRLLGNCREAMAGDGRVVV 270 (334)
T ss_dssp --------------------CSSCSEEEEES-------------CGGGCCH-------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------------------CCCCCEEEEch-------------hccCCCH-------HHHHHHHHHHHHhcCCCCEEEE
Confidence 14699999721 1222321 1235789999999999999998
Q ss_pred EcCCCC
Q 004787 234 STCSMN 239 (730)
Q Consensus 234 STCSl~ 239 (730)
....+.
T Consensus 271 ~e~~~~ 276 (334)
T 2ip2_A 271 IERTIS 276 (334)
T ss_dssp EECCBC
T ss_pred EEeccC
Confidence 865543
No 245
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.17 E-value=2.8e-06 Score=88.32 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=85.4
Q ss_pred hccCCCCC--CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC--------C-CceE
Q 004787 72 LFLDVQPD--HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC--------T-ANLI 140 (730)
Q Consensus 72 llLd~~pg--~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg--------~-~nv~ 140 (730)
.++.+++| .+|||++||.|.-++.+|.. .+.|+++|+++..+.++++++++.. . .++.
T Consensus 80 ~al~l~~g~~~~VLDl~~G~G~dal~lA~~-----------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~ 148 (258)
T 2oyr_A 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASV-----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQ 148 (258)
T ss_dssp HHTTCBTTBCCCEEETTCTTCHHHHHHHHH-----------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEE
T ss_pred HHhcccCCCCCEEEEcCCcCCHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEE
Confidence 45566777 99999999999999999886 3579999999999999999887642 2 4688
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHH
Q 004787 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMR 220 (730)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~r 220 (730)
+.+.|+..+... . ...||.|++|||..... . ...++.
T Consensus 149 ~~~~D~~~~L~~-------------------~-~~~fDvV~lDP~y~~~~--------------~---------saavkk 185 (258)
T 2oyr_A 149 LIHASSLTALTD-------------------I-TPRPQVVYLDPMFPHKQ--------------K---------SALVKK 185 (258)
T ss_dssp EEESCHHHHSTT-------------------C-SSCCSEEEECCCCCCCC--------------C--------------H
T ss_pred EEECCHHHHHHh-------------------C-cccCCEEEEcCCCCCcc--------------c---------chHHHH
Confidence 899888764210 0 13599999999853211 0 012333
Q ss_pred HHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcE
Q 004787 221 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSV 258 (730)
Q Consensus 221 Al~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~v 258 (730)
.++.|++.+ .| ..+-++++..+++.....+
T Consensus 186 ~~~~lr~l~-----~~---~~~~~~ll~~a~~~a~~rv 215 (258)
T 2oyr_A 186 EMRVFQSLV-----GP---DLDADGLLEPARLLATKRV 215 (258)
T ss_dssp HHHHHHHHS-----CC---CTTGGGGHHHHHHHCSSEE
T ss_pred HHHHHHHhh-----cC---CccHHHHHHHHHHhcCCeE
Confidence 444454433 23 3467788888888764443
No 246
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.16 E-value=9.2e-06 Score=84.33 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=87.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHH------hcCCCCCCCCCeEEEEEeCCH---HHHH-----------HHHHHHHH--
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEII------HQSTNPGALPNGMVIANDLDV---QRCN-----------LLIHQTKR-- 133 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L------~~~~~~~~~p~G~VvAnD~d~---~Rl~-----------~L~~nlkR-- 133 (730)
.+++.+||++|.|.|--++.+++.. ... .......++++|.++ ..+. .++.+++.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~---~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~ 134 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQ---AQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWP 134 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTT---SSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCC---CCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcc
Confidence 3567899999999999998887765 210 000136899999987 3333 33333333
Q ss_pred ----------c--CCCceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhh
Q 004787 134 ----------M--CTANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWR 200 (730)
Q Consensus 134 ----------l--g~~nv~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~ 200 (730)
+ +..++.+..+|+.. ++.+. ......||.|++|+- .-.++|++|.
T Consensus 135 ~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~-----------------~~~~~~~D~iflD~f-----sp~~~p~lw~ 192 (257)
T 2qy6_A 135 MPLPGCHRLLLDEGRVTLDLWFGDINELISQLD-----------------DSLNQKVDAWFLDGF-----APAKNPDMWT 192 (257)
T ss_dssp CSCSEEEEEEEC--CEEEEEEESCHHHHGGGSC-----------------GGGTTCEEEEEECSS-----CTTTCGGGCC
T ss_pred ccccchhheeccCCceEEEEEECcHHHHHhhcc-----------------cccCCeEEEEEECCC-----CcccChhhcC
Confidence 1 12356777888876 22210 000137999999971 1245787765
Q ss_pred hcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEE
Q 004787 201 KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 261 (730)
Q Consensus 201 ~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velv 261 (730)
. .++....++|+|||+|+.-|++ .+|...|...| |++.
T Consensus 193 ~--------------~~l~~l~~~L~pGG~l~tysaa-------~~vrr~L~~aG--F~v~ 230 (257)
T 2qy6_A 193 Q--------------NLFNAMARLARPGGTLATFTSA-------GFVRRGLQEAG--FTMQ 230 (257)
T ss_dssp H--------------HHHHHHHHHEEEEEEEEESCCB-------HHHHHHHHHHT--EEEE
T ss_pred H--------------HHHHHHHHHcCCCcEEEEEeCC-------HHHHHHHHHCC--CEEE
Confidence 3 5788899999999999843332 47788888865 4443
No 247
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.15 E-value=1.1e-07 Score=97.10 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=67.7
Q ss_pred chhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 69 lp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
..+..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..++++++ +..++.+.+.|+..
T Consensus 20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-----------~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~ 86 (245)
T 1yub_A 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-----------SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQ 86 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-----------SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTT
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-----------CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhh
Confidence 3344567789999999999999999999876 3689999999999888777654 34678888888877
Q ss_pred CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004787 149 FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (730)
Q Consensus 149 fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (730)
++.. ....| .|++++|.....
T Consensus 87 ~~~~--------------------~~~~f-~vv~n~Py~~~~ 107 (245)
T 1yub_A 87 FQFP--------------------NKQRY-KIVGNIPYHLST 107 (245)
T ss_dssp TTCC--------------------CSSEE-EEEEECCSSSCH
T ss_pred cCcc--------------------cCCCc-EEEEeCCccccH
Confidence 5410 01468 899999987653
No 248
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.14 E-value=4e-06 Score=82.36 Aligned_cols=102 Identities=16% Similarity=0.048 Sum_probs=71.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.++.+|||+|||+|..+..+++. ...|+++|+++..+..++.+. ..+...|+..+..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-----------~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~----- 87 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-----------GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDM----- 87 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-----------TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCC-----
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCC-----
Confidence 67899999999999999888664 268999999999888766532 1455566554210
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
......||.|++.- ++.+.++ ...+|..+.++|+|||+++.++-
T Consensus 88 --------------~~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 88 --------------PYEEEQFDCVIFGD------VLEHLFD----------------PWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp --------------CSCTTCEEEEEEES------CGGGSSC----------------HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred --------------CCCCCccCEEEECC------hhhhcCC----------------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 11226799999732 2211111 13688999999999999999864
Q ss_pred C
Q 004787 237 S 237 (730)
Q Consensus 237 S 237 (730)
.
T Consensus 132 ~ 132 (230)
T 3cc8_A 132 N 132 (230)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.14 E-value=4.7e-06 Score=88.24 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=68.4
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++. +.+++.+.++|+..++
T Consensus 43 v~~l~~~~~~~VLEIG~G~G~lT~~La~~-----------~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~ 109 (295)
T 3gru_A 43 VESANLTKDDVVLEIGLGKGILTEELAKN-----------AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVD 109 (295)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSC
T ss_pred HHhcCCCCcCEEEEECCCchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCC
Confidence 44567889999999999999999999886 3689999999999999999887 4568999999987753
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCC
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPC 186 (730)
. ....||+|+++.|.
T Consensus 110 ~---------------------~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 110 L---------------------NKLDFNKVVANLPY 124 (295)
T ss_dssp G---------------------GGSCCSEEEEECCG
T ss_pred c---------------------ccCCccEEEEeCcc
Confidence 1 11469999999883
No 250
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=98.13 E-value=7.7e-06 Score=87.11 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=86.4
Q ss_pred cCCCC-CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCC
Q 004787 74 LDVQP-DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPG 151 (730)
Q Consensus 74 Ld~~p-g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~ 151 (730)
++..+ +.+|||+|||+|..+..+++.. |...++++|+ +..+..++.++.+.+.. ++.+..+|....+.
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRH---------PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHC---------TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhC---------CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 35556 8899999999999999998773 4578999999 88899999988888764 58888888765321
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.....||.|++-- ++..|.. ....++|+++.+.|+|||+|
T Consensus 244 --------------------~~~~~~D~v~~~~-------------vlh~~~~-------~~~~~~l~~~~~~L~pgG~l 283 (352)
T 3mcz_A 244 --------------------FEGGAADVVMLND-------------CLHYFDA-------REAREVIGHAAGLVKPGGAL 283 (352)
T ss_dssp --------------------GTTCCEEEEEEES-------------CGGGSCH-------HHHHHHHHHHHHTEEEEEEE
T ss_pred --------------------cCCCCccEEEEec-------------ccccCCH-------HHHHHHHHHHHHHcCCCCEE
Confidence 0124599999711 1222321 12467999999999999999
Q ss_pred EEEcCCCCC
Q 004787 232 VYSTCSMNP 240 (730)
Q Consensus 232 VYSTCSl~p 240 (730)
+.....+..
T Consensus 284 ~i~e~~~~~ 292 (352)
T 3mcz_A 284 LILTMTMND 292 (352)
T ss_dssp EEEEECCCT
T ss_pred EEEEeccCC
Confidence 987665543
No 251
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.10 E-value=5.1e-06 Score=87.88 Aligned_cols=99 Identities=18% Similarity=0.100 Sum_probs=65.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-ecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT-NHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt-~~Da~~fp~~~~~~ 156 (730)
+|.+|||++||+|+.|..|++. +.+.|+|+|+++..++...+ .. +.+... ..++..++.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~----------ga~~V~aVDvs~~mL~~a~r----~~-~rv~~~~~~ni~~l~~----- 144 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN----------GAKLVYAVDVGTNQLVWKLR----QD-DRVRSMEQYNFRYAEP----- 144 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----------TCSEEEEECSSSSCSCHHHH----TC-TTEEEECSCCGGGCCG-----
T ss_pred cccEEEecCCCccHHHHHHHhC----------CCCEEEEEECCHHHHHHHHH----hC-cccceecccCceecch-----
Confidence 5789999999999999988774 24799999999987765222 11 222222 122222211
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.......||.|++|+.... + ..+|....++|||||++|..
T Consensus 145 -------------~~l~~~~fD~v~~d~sf~s---------------------l----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 145 -------------VDFTEGLPSFASIDVSFIS---------------------L----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp -------------GGCTTCCCSEEEECCSSSC---------------------G----GGTHHHHHHHSCTTCEEEEE
T ss_pred -------------hhCCCCCCCEEEEEeeHhh---------------------H----HHHHHHHHHHcCcCCEEEEE
Confidence 0011235999999875221 1 34788889999999999986
No 252
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.09 E-value=4.1e-06 Score=82.48 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=78.8
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+....++.+|||+|||+|..+..+ ...|+++|+++. ++.+...|+..+|.
T Consensus 62 l~~~~~~~~vLDiG~G~G~~~~~l--------------~~~v~~~D~s~~---------------~~~~~~~d~~~~~~- 111 (215)
T 2zfu_A 62 LRQRPASLVVADFGCGDCRLASSI--------------RNPVHCFDLASL---------------DPRVTVCDMAQVPL- 111 (215)
T ss_dssp HHTSCTTSCEEEETCTTCHHHHHC--------------CSCEEEEESSCS---------------STTEEESCTTSCSC-
T ss_pred HhccCCCCeEEEECCcCCHHHHHh--------------hccEEEEeCCCC---------------CceEEEeccccCCC-
Confidence 334567899999999999987665 147999999987 34455666655331
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
....||.|++... +. .+ ....+|..+.++|+|||+++
T Consensus 112 --------------------~~~~fD~v~~~~~------l~-~~----------------~~~~~l~~~~~~L~~gG~l~ 148 (215)
T 2zfu_A 112 --------------------EDESVDVAVFCLS------LM-GT----------------NIRDFLEEANRVLKPGGLLK 148 (215)
T ss_dssp --------------------CTTCEEEEEEESC------CC-SS----------------CHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCEeEEEEehh------cc-cc----------------CHHHHHHHHHHhCCCCeEEE
Confidence 1257999997322 10 01 12467888999999999999
Q ss_pred EEcCCCCCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 233 YSTCSMNPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 233 YSTCSl~p~ENEaVV~~~L~~~~~~velvd 262 (730)
.+++... ..+..-+..+|++.| ++++.
T Consensus 149 i~~~~~~-~~~~~~~~~~l~~~G--f~~~~ 175 (215)
T 2zfu_A 149 VAEVSSR-FEDVRTFLRAVTKLG--FKIVS 175 (215)
T ss_dssp EEECGGG-CSCHHHHHHHHHHTT--EEEEE
T ss_pred EEEcCCC-CCCHHHHHHHHHHCC--CEEEE
Confidence 9876532 236777788888876 55554
No 253
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.06 E-value=1.2e-06 Score=90.88 Aligned_cols=84 Identities=17% Similarity=0.035 Sum_probs=65.9
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-------HHHHHHHHHHHHcCCCc-eEEEec
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-------QRCNLLIHQTKRMCTAN-LIVTNH 144 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~-------~Rl~~L~~nlkRlg~~n-v~vt~~ 144 (730)
++.+.++.+|||+|||+|..|+.+|.. .+.|+|+|+++ ..+..+++|++..+..+ +.+.+.
T Consensus 78 a~~~~~~~~VLDlgcG~G~~a~~lA~~-----------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~ 146 (258)
T 2r6z_A 78 AVNHTAHPTVWDATAGLGRDSFVLASL-----------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG 146 (258)
T ss_dssp HTTGGGCCCEEETTCTTCHHHHHHHHT-----------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES
T ss_pred HhCcCCcCeEEEeeCccCHHHHHHHHh-----------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC
Confidence 346667899999999999999999874 36899999999 88888888887777655 889998
Q ss_pred ccccCCCcccCCCCCCCCcccccccccccc--ccccEEEecCCC
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQ--LLFDRVLCDVPC 186 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~--~~FDrVL~DvPC 186 (730)
|+..+.. .... ..||.|++|||.
T Consensus 147 d~~~~l~-------------------~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 147 NAAEQMP-------------------ALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp CHHHHHH-------------------HHHHHHCCCSEEEECCCC
T ss_pred CHHHHHH-------------------hhhccCCCccEEEECCCC
Confidence 8876321 0111 479999999974
No 254
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.06 E-value=2.6e-06 Score=89.15 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=65.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
++++.+|||+|||||++|..+++..+ .+.|+|+|+........+. ....+. +++....++..+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~---------~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~------ 134 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKE---------VSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIH------ 134 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTT---------EEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTT------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC---------CCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceeh------
Confidence 57899999999999999988776532 3567777765321000000 000011 333333332111
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC-CEEEEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG-GRIVYS 234 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG-GrLVYS 234 (730)
......||.|++|..-+ +|. .|.. +..+..+|.-|.++|+|| |.+|..
T Consensus 135 ---------------~l~~~~~DlVlsD~apn-sG~------~~~D---------~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 135 ---------------RLEPVKCDTLLCDIGES-SSS------SVTE---------GERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp ---------------TSCCCCCSEEEECCCCC-CSC------HHHH---------HHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ---------------hcCCCCccEEEecCccC-cCc------hHHH---------HHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11236799999997544 553 1111 123344589999999999 999985
Q ss_pred c
Q 004787 235 T 235 (730)
Q Consensus 235 T 235 (730)
.
T Consensus 184 V 184 (277)
T 3evf_A 184 V 184 (277)
T ss_dssp E
T ss_pred e
Confidence 3
No 255
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.05 E-value=9.9e-06 Score=80.33 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|+.+|||++||+|..+..++. . +++|+++..+..++.+ ++.+...|+..++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~------------~---~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------ 98 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI------------K---IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------ 98 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC------------C---EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS------
T ss_pred CCCcEEEeCCCCCHHHHHHHH------------H---hccCCCHHHHHHHHhc-------CCEEEEcccccCCC------
Confidence 488999999999998776521 2 8999999999887765 46677777665431
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
....||.|++.- ++...+ ....+|..+.++|+|||+++.++..
T Consensus 99 ---------------~~~~fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 99 ---------------KDESFDFALMVT------TICFVD----------------DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp ---------------CTTCEEEEEEES------CGGGSS----------------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---------------CCCCeeEEEEcc------hHhhcc----------------CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 125799999842 221111 1246889999999999999998754
Q ss_pred C
Q 004787 238 M 238 (730)
Q Consensus 238 l 238 (730)
.
T Consensus 142 ~ 142 (219)
T 1vlm_A 142 R 142 (219)
T ss_dssp S
T ss_pred C
Confidence 3
No 256
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.05 E-value=2.7e-05 Score=91.60 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=88.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCC----------------------------------CCCeEEEEEe
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGA----------------------------------LPNGMVIAND 118 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~----------------------------------~p~G~VvAnD 118 (730)
+.+..++..|||.|||+|...+.+|.+..+.. ++. .+...|+|+|
T Consensus 185 ~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~a-pG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~D 263 (703)
T 3v97_A 185 RSGWQPGTPLLDPMCGSGTLLIEAAMLATDRA-PGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSD 263 (703)
T ss_dssp HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCC-TTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred hhCCCCCCeEEecCCCCcHHHHHHHHHHhhcC-CCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEE
Confidence 34667899999999999999988877643210 000 0235899999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChh
Q 004787 119 LDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPD 197 (730)
Q Consensus 119 ~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd 197 (730)
+|+..+..++.|+++.|+.+ +.+...|+..+..- .....||.|++|||. |.. +
T Consensus 264 id~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~-------------------~~~~~~d~Iv~NPPY-G~R-l----- 317 (703)
T 3v97_A 264 SDARVIQRARTNARLAGIGELITFEVKDVAQLTNP-------------------LPKGPYGTVLSNPPY-GER-L----- 317 (703)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS-------------------CTTCCCCEEEECCCC-CC--------
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc-------------------cccCCCCEEEeCCCc-ccc-c-----
Confidence 99999999999999999876 88889988775210 011379999999996 211 0
Q ss_pred hhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 198 IWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 198 ~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
+....+..+.. -+.+.++.+.+||+++.-|
T Consensus 318 -------g~~~~l~~ly~-~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 318 -------DSEPALIALHS-LLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp --------CCHHHHHHHH-HHHHHHHHHCTTCEEEEEE
T ss_pred -------cchhHHHHHHH-HHHHHHHhhCCCCeEEEEe
Confidence 11122333333 3556677777999887764
No 257
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.04 E-value=5e-05 Score=78.97 Aligned_cols=120 Identities=11% Similarity=0.004 Sum_probs=76.9
Q ss_pred CCCEEEeecCCc---chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 78 PDHFVLDMCAAP---GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 78 pg~~VLDmCAAP---GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
+..+|||++||+ |..+..+++. . |.+.|+++|+|+..+..++.++.. ..++.+...|....+.+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~--------p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~- 144 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-N--------PDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYIL- 144 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-C--------TTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHH-
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-C--------CCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhh-
Confidence 457999999999 9765444333 2 457999999999999988887632 356888888876521100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
... ..........||.|++- +++..-++ . ....+|.+..+.|+|||+|+.+
T Consensus 145 ~~~---------~~~~~~d~~~~d~v~~~------~vlh~~~d-------~-------~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 145 NHP---------DVRRMIDFSRPAAIMLV------GMLHYLSP-------D-------VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp HSH---------HHHHHCCTTSCCEEEET------TTGGGSCT-------T-------THHHHHHHHHHHSCTTCEEEEE
T ss_pred ccc---------hhhccCCCCCCEEEEEe------chhhhCCc-------H-------HHHHHHHHHHHhCCCCcEEEEE
Confidence 000 00000112478999872 22211111 0 1356899999999999999998
Q ss_pred cCCC
Q 004787 235 TCSM 238 (730)
Q Consensus 235 TCSl 238 (730)
+...
T Consensus 196 ~~~~ 199 (274)
T 2qe6_A 196 SLVD 199 (274)
T ss_dssp EEBC
T ss_pred EecC
Confidence 7654
No 258
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=98.04 E-value=1e-06 Score=91.16 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND 118 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD 118 (730)
++||++|||++|||||+|..+++..+-. ...|.|+|+|
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg-----~V~G~vig~D 108 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQ-----EVRGYTKGGP 108 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEE-----EEEEECCCST
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCC-----CceeEEEccc
Confidence 5899999999999999999988762210 0147888888
No 259
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.03 E-value=6.1e-06 Score=90.90 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=73.9
Q ss_pred CCCEEEeecCC------cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCC
Q 004787 78 PDHFVLDMCAA------PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPG 151 (730)
Q Consensus 78 pg~~VLDmCAA------PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~ 151 (730)
++.+|||+||| +|+.++.++.... |.+.|+++|+++.+. ...+++.+..+|+..+|.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f--------P~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf 278 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFF--------PRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEF 278 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHC--------TTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhC--------CCCEEEEEECCHHHh---------hcCCCcEEEEecccccch
Confidence 56899999999 7888888877642 468999999999862 234688999999877432
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.. ........||.|++|.- - . ..-+.+.|..+.++|||||++
T Consensus 279 ~~---------------~l~~~d~sFDlVisdgs----H----~---------------~~d~~~aL~el~rvLKPGGvl 320 (419)
T 3sso_A 279 LD---------------RIARRYGPFDIVIDDGS----H----I---------------NAHVRTSFAALFPHVRPGGLY 320 (419)
T ss_dssp HH---------------HHHHHHCCEEEEEECSC----C----C---------------HHHHHHHHHHHGGGEEEEEEE
T ss_pred hh---------------hhhcccCCccEEEECCc----c----c---------------chhHHHHHHHHHHhcCCCeEE
Confidence 10 00001368999998641 0 0 123456889999999999999
Q ss_pred EEEcC
Q 004787 232 VYSTC 236 (730)
Q Consensus 232 VYSTC 236 (730)
+.+..
T Consensus 321 Vi~Dl 325 (419)
T 3sso_A 321 VIEDM 325 (419)
T ss_dssp EEECG
T ss_pred EEEec
Confidence 98743
No 260
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.98 E-value=3.4e-06 Score=88.88 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=65.7
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
++|.+|||+||||||+|..+++.++ ...|+++|+...-....+ ..+.++ .++.........
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~g---------v~sV~Gvdlg~~~~~~P~-~~~~~~-~~iv~~~~~~di-------- 140 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKE---------VMSVKGYTLGIEGHEKPI-HMQTLG-WNIVKFKDKSNV-------- 140 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT---------EEEEEEECCCCTTSCCCC-CCCBTT-GGGEEEECSCCT--------
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcC---------CceeeeEEeccccccccc-cccccC-CceEEeecCcee--------
Confidence 5899999999999999999887532 357889998542100000 000001 112211111110
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC-CEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG-GRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG-GrLVYS 234 (730)
.......||.|++|.-.+ +|.- .+ =+..|..||.-|.++|+|| |.+|.-
T Consensus 141 -------------~~l~~~~~DlVlsD~APn-sG~~----~~-----------D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 141 -------------FTMPTEPSDTLLCDIGES-SSNP----LV-----------ERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp -------------TTSCCCCCSEEEECCCCC-CSSH----HH-----------HHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred -------------eecCCCCcCEEeecCcCC-CCCH----HH-----------HHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 011236799999998777 7741 00 1223455589999999999 999865
No 261
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=97.96 E-value=9.3e-06 Score=88.70 Aligned_cols=106 Identities=12% Similarity=0.035 Sum_probs=71.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE--EEecccccCC
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI--VTNHEAQHFP 150 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~--vt~~Da~~fp 150 (730)
.+.+.++.+|||++||+|..+..+++. ...|+++|+++..+..++.+ +..... +...++..
T Consensus 102 ~~~~~~~~~VLDiGcG~G~~~~~l~~~-----------g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~-- 164 (416)
T 4e2x_A 102 TELTGPDPFIVEIGCNDGIMLRTIQEA-----------GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADD-- 164 (416)
T ss_dssp TTTCSSSCEEEEETCTTTTTHHHHHHT-----------TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHH--
T ss_pred HhCCCCCCEEEEecCCCCHHHHHHHHc-----------CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhh--
Confidence 345678999999999999988888764 35899999999988776543 333211 00011111
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCE
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR 230 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGr 230 (730)
.......||.|++. +++.+-++ ...+|..+.++|||||+
T Consensus 165 -------------------l~~~~~~fD~I~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~ 203 (416)
T 4e2x_A 165 -------------------VRRTEGPANVIYAA------NTLCHIPY----------------VQSVLEGVDALLAPDGV 203 (416)
T ss_dssp -------------------HHHHHCCEEEEEEE------SCGGGCTT----------------HHHHHHHHHHHEEEEEE
T ss_pred -------------------cccCCCCEEEEEEC------ChHHhcCC----------------HHHHHHHHHHHcCCCeE
Confidence 11223689999982 23322221 35678999999999999
Q ss_pred EEEEcC
Q 004787 231 IVYSTC 236 (730)
Q Consensus 231 LVYSTC 236 (730)
++.++-
T Consensus 204 l~i~~~ 209 (416)
T 4e2x_A 204 FVFEDP 209 (416)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999753
No 262
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.93 E-value=3.1e-06 Score=86.21 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=64.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-cccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN-HEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~-~Da~~fp~~~~~~ 156 (730)
++.+|||+|||+|..|..+++. + ...|+|+|+++..+..+..+. +.+.+.. .+...+..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g---------~~~V~gvDis~~ml~~a~~~~-----~~~~~~~~~~~~~~~~----- 96 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-G---------AKLVYALDVGTNQLAWKIRSD-----ERVVVMEQFNFRNAVL----- 96 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T---------CSEEEEECSSCCCCCHHHHTC-----TTEEEECSCCGGGCCG-----
T ss_pred CCCEEEEEccCCCHHHHHHHhc-C---------CCEEEEEcCCHHHHHHHHHhC-----ccccccccceEEEeCH-----
Confidence 4679999999999999988775 1 358999999999887644332 2222211 11111100
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
.......||.+.+|+..+.. ..+|..+.++|||||+++..+
T Consensus 97 -------------~~~~~~~~d~~~~D~v~~~l-------------------------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 97 -------------ADFEQGRPSFTSIDVSFISL-------------------------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp -------------GGCCSCCCSEEEECCSSSCG-------------------------GGTHHHHHHHSCTTCEEEEEE
T ss_pred -------------hHcCcCCCCEEEEEEEhhhH-------------------------HHHHHHHHHhccCCCEEEEEE
Confidence 00111236777777754321 347888999999999999853
No 263
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.92 E-value=3.6e-06 Score=88.17 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
++|+.+|||+|||||+++..+++.. +...|+++|+........+. .+.++ .+++....+...
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~---------gv~sV~GvdvG~d~~~~pi~-~~~~g-~~ii~~~~~~dv------- 149 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLK---------NVKKVMAFTLGVQGHEKPIM-RTTLG-WNLIRFKDKTDV------- 149 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTST---------TEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCG-------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---------CCCeeeeEEeccCccccccc-cccCC-CceEEeeCCcch-------
Confidence 5789999999999999998877543 24678899986531000000 00011 122222111110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC--CEEEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG--GRIVY 233 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG--GrLVY 233 (730)
.......||.||||.--+ +|.- +. =+..+..+|.-|.++|+|| |.+|.
T Consensus 150 --------------~~l~~~~~DvVLSDmApn-sG~~------~~---------D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 150 --------------FNMEVIPGDTLLCDIGES-SPSI------AV---------EEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp --------------GGSCCCCCSEEEECCCCC-CSCH------HH---------HHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred --------------hhcCCCCcCEEEecCccC-CCCh------HH---------HHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 012236899999997545 5631 00 1223344588899999999 99986
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
-
T Consensus 200 K 200 (282)
T 3gcz_A 200 K 200 (282)
T ss_dssp E
T ss_pred E
Confidence 4
No 264
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.92 E-value=1.4e-05 Score=87.00 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+++|++|||+||||||+|.++++. ++.|+|+|..+= ...+ ...+++.+...|+..+..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-----------g~~V~aVD~~~l-----~~~l--~~~~~V~~~~~d~~~~~~---- 266 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-----------NMWVYSVDNGPM-----AQSL--MDTGQVTWLREDGFKFRP---- 266 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-----------TCEEEEECSSCC-----CHHH--HTTTCEEEECSCTTTCCC----
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-----------CCEEEEEEhhhc-----Chhh--ccCCCeEEEeCccccccC----
Confidence 578999999999999999998775 589999997531 1111 234678888888776431
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCC
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdG 190 (730)
....||.|+||+-|.-.|
T Consensus 267 -----------------~~~~~D~vvsDm~~~p~~ 284 (375)
T 4auk_A 267 -----------------TRSNISWMVCDMVEKPAK 284 (375)
T ss_dssp -----------------CSSCEEEEEECCSSCHHH
T ss_pred -----------------CCCCcCEEEEcCCCChHH
Confidence 125799999999754433
No 265
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.90 E-value=1.4e-05 Score=82.85 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=57.3
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
+..+++.++++|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++.. ..++.+.++|+..++
T Consensus 22 v~~~~~~~~~~VLEIG~G~G~lt~~La~~-----------~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~ 88 (255)
T 3tqs_A 22 VSAIHPQKTDTLVEIGPGRGALTDYLLTE-----------CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFD 88 (255)
T ss_dssp HHHHCCCTTCEEEEECCTTTTTHHHHTTT-----------SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCC
T ss_pred HHhcCCCCcCEEEEEcccccHHHHHHHHh-----------CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCC
Confidence 34567889999999999999999998764 36899999999999999988764 468999999998864
No 266
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.90 E-value=3.6e-05 Score=80.59 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=72.4
Q ss_pred CCCEEEeecCCcch----HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH--------------Hc-----
Q 004787 78 PDHFVLDMCAAPGS----KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK--------------RM----- 134 (730)
Q Consensus 78 pg~~VLDmCAAPGs----KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk--------------Rl----- 134 (730)
++.+|||+|||+|- .+..|++.+... .....|+|.|+|...+..+++++- +.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~-----~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~ 179 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMA-----PGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT 179 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSC-----TTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccC-----CCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccc
Confidence 45799999999998 445555654321 003589999999999999987641 11
Q ss_pred ---C----C-----CceEEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhc
Q 004787 135 ---C----T-----ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKW 202 (730)
Q Consensus 135 ---g----~-----~nv~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w 202 (730)
+ + .++.+..+|....|. .....||.|+|- .++ + -+
T Consensus 180 ~~~~~~~~v~~~lr~~V~F~~~dl~~~~~--------------------~~~~~fDlI~cr------nvl-----i--yf 226 (274)
T 1af7_A 180 GPHEGLVRVRQELANYVEFSSVNLLEKQY--------------------NVPGPFDAIFCR------NVM-----I--YF 226 (274)
T ss_dssp TTSCSEEEECHHHHTTEEEEECCTTCSSC--------------------CCCCCEEEEEEC------SSG-----G--GS
T ss_pred cCCCCceeechhhcccCeEEecccCCCCC--------------------CcCCCeeEEEEC------Cch-----H--hC
Confidence 0 0 145666666544110 002579999980 111 0 00
Q ss_pred ccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 203 NVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 203 ~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
-...|.+++.+..+.|+|||.|+..
T Consensus 227 -------~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 227 -------DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp -------CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred -------CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1245789999999999999999873
No 267
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.86 E-value=8.8e-05 Score=74.46 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=82.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEecccccC----
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHF---- 149 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~---~nv~vt~~Da~~f---- 149 (730)
++..+||++++ |.-|+.+|++ +.|+|+++|.|++++..++.++++.|. .++.+..+|+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~----------~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg 96 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAEL----------PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWG 96 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTS----------TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGG
T ss_pred hCCCEEEEECc--hHHHHHHHHc----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhccc
Confidence 35679999997 5656666653 148999999999999999999999984 5788888886532
Q ss_pred -CCcccCCCCCCCCcccccccc--ccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004787 150 -PGCRANKNFSSASDKGIESES--NMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (730)
Q Consensus 150 -p~~~~~~~~~~~~~~~~~~~~--~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (730)
|.-..... . -..+.... ......||.|++|+. |. ...+..++.+|+
T Consensus 97 ~p~~~~~~~---~-l~~~~~~i~~~~~~~~fDlIfIDg~--------k~-------------------~~~~~~~l~~l~ 145 (202)
T 3cvo_A 97 HPVSDAKWR---S-YPDYPLAVWRTEGFRHPDVVLVDGR--------FR-------------------VGCALATAFSIT 145 (202)
T ss_dssp CBSSSTTGG---G-TTHHHHGGGGCTTCCCCSEEEECSS--------SH-------------------HHHHHHHHHHCS
T ss_pred ccccchhhh---h-HHHHhhhhhccccCCCCCEEEEeCC--------Cc-------------------hhHHHHHHHhcC
Confidence 11000000 0 00000000 001267999999874 10 123455789999
Q ss_pred CCCEEEEEcCCCCCCCcHHHHHHHHH
Q 004787 227 VGGRIVYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 227 pGGrLVYSTCSl~p~ENEaVV~~~L~ 252 (730)
+||+||.=-.+.. .....|.++++
T Consensus 146 ~GG~Iv~DNv~~r--~~y~~v~~~~~ 169 (202)
T 3cvo_A 146 RPVTLLFDDYSQR--RWQHQVEEFLG 169 (202)
T ss_dssp SCEEEEETTGGGC--SSGGGGHHHHC
T ss_pred CCeEEEEeCCcCC--cchHHHHHHHh
Confidence 9999987433333 34456677775
No 268
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=97.84 E-value=7.6e-05 Score=79.74 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp~~ 152 (730)
+++.++.+|||++||+|..+..+++.. |...++++|++ ..+. +.++++.+. .++.+..+|+.. +
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~-- 244 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREH---------PGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-E-- 244 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHC---------TTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-C--
T ss_pred CCccCCceEEEECCccCHHHHHHHHHC---------CCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-C--
Confidence 467789999999999999999998874 45789999993 2222 222222232 357787777641 1
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
. . .||.|++-- ++..|.. ....++|+++.+.|||||+|+
T Consensus 245 -------------------~-p-~~D~v~~~~-------------vlh~~~d-------~~~~~~L~~~~~~LkpgG~l~ 283 (348)
T 3lst_A 245 -------------------V-P-HADVHVLKR-------------ILHNWGD-------EDSVRILTNCRRVMPAHGRVL 283 (348)
T ss_dssp -------------------C-C-CCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHTCCTTCEEE
T ss_pred -------------------C-C-CCcEEEEeh-------------hccCCCH-------HHHHHHHHHHHHhcCCCCEEE
Confidence 0 1 699998711 1222321 122578999999999999999
Q ss_pred EEcCCCC
Q 004787 233 YSTCSMN 239 (730)
Q Consensus 233 YSTCSl~ 239 (730)
.....+.
T Consensus 284 i~e~~~~ 290 (348)
T 3lst_A 284 VIDAVVP 290 (348)
T ss_dssp EEECCBC
T ss_pred EEEeccC
Confidence 8765443
No 269
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=97.80 E-value=3.1e-05 Score=79.10 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=55.8
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
..+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..++++++. ..++.+.++|+..++
T Consensus 24 ~~~~~~~~~~VLDiG~G~G~lt~~l~~~-----------~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~ 89 (244)
T 1qam_A 24 TNIRLNEHDNIFEIGSGKGHFTLELVQR-----------CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFK 89 (244)
T ss_dssp TTCCCCTTCEEEEECCTTSHHHHHHHHH-----------SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCC
T ss_pred HhCCCCCCCEEEEEeCCchHHHHHHHHc-----------CCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCC
Confidence 4456788999999999999999999876 36899999999999999887753 357899999987754
No 270
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.73 E-value=3.5e-05 Score=80.56 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=66.0
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~f 149 (730)
.+..+++.++ +|||+|||+|..|..|++. .+.|+|+|+|+..+..+++++. ..++.+.++|+..+
T Consensus 39 Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-----------~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~ 103 (271)
T 3fut_A 39 IVEAARPFTG-PVFEVGPGLGALTRALLEA-----------GAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHCCCCS-CEEEECCTTSHHHHHHHHT-----------TCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGS
T ss_pred HHHhcCCCCC-eEEEEeCchHHHHHHHHHc-----------CCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhC
Confidence 3445678899 9999999999999999875 3689999999999999988664 36799999998875
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCS 187 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS 187 (730)
+.- ....||+|+.+.|..
T Consensus 104 ~~~--------------------~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 104 PWE--------------------EVPQGSLLVANLPYH 121 (271)
T ss_dssp CGG--------------------GSCTTEEEEEEECSS
T ss_pred Chh--------------------hccCccEEEecCccc
Confidence 421 012589999999843
No 271
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=97.72 E-value=0.00014 Score=78.10 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=80.4
Q ss_pred cCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
.+..+..+|||+++|+|..+..|++.. |..+++..|. +.-+..++.++...+..++.+..+|...-|
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~---------p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~--- 241 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLY---------PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP--- 241 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHC---------SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC---
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhC---------CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC---
Confidence 456778899999999999999998873 5667888887 666666666554445678999988864311
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...+|.|++ -.+...|.... -.+||+++.+.|+|||+|+.
T Consensus 242 --------------------~~~~D~~~~-------------~~vlh~~~d~~-------~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 242 --------------------LPEADLYIL-------------ARVLHDWADGK-------CSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp --------------------CCCCSEEEE-------------ESSGGGSCHHH-------HHHHHHHHHHHCCTTCEEEE
T ss_pred --------------------CCCceEEEe-------------eeecccCCHHH-------HHHHHHHHHhhCCCCCEEEE
Confidence 134788886 11334443322 25789999999999999998
Q ss_pred EcCCCCC
Q 004787 234 STCSMNP 240 (730)
Q Consensus 234 STCSl~p 240 (730)
.-.-+.+
T Consensus 282 ~e~~~~~ 288 (353)
T 4a6d_A 282 IESLLDE 288 (353)
T ss_dssp EECCCCT
T ss_pred EEeeeCC
Confidence 7665543
No 272
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.70 E-value=2.6e-05 Score=81.95 Aligned_cols=85 Identities=22% Similarity=0.249 Sum_probs=66.7
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+|+++||..+||+++|.|+.|..|++. .|+|+|+|.|+..+..+++ ++. .++.+++.+..+++..
T Consensus 17 ~L~~~~gg~~VD~T~G~GGHS~~il~~-----------~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~ 81 (285)
T 1wg8_A 17 LLAVRPGGVYVDATLGGAGHARGILER-----------GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRH 81 (285)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHH
T ss_pred hhCCCCCCEEEEeCCCCcHHHHHHHHC-----------CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHH
Confidence 467899999999999999999999885 3899999999999998877 533 5788888887775431
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
- . ......||.||+|...|.
T Consensus 82 L-~---------------~~g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 82 L-A---------------ALGVERVDGILADLGVSS 101 (285)
T ss_dssp H-H---------------HTTCSCEEEEEEECSCCH
T ss_pred H-H---------------HcCCCCcCEEEeCCcccc
Confidence 0 0 011146999999998776
No 273
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.67 E-value=0.00028 Score=72.81 Aligned_cols=106 Identities=16% Similarity=0.012 Sum_probs=73.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.+..+|||++||.|-.+..++ . ...++|.|+|...+..+++++.++| .+..+...|...-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~---------~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~------ 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G---------IASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAP------ 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T---------CSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSC------
T ss_pred CCCCeEEEecCCccHHHHHhc---c---------CCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCC------
Confidence 567799999999998877654 2 5799999999999999999999988 45566666654321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE-Ec
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY-ST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY-ST 235 (730)
....||.||+- ....-|...|...+.+.++.|+++|.+|- =|
T Consensus 165 ----------------~~~~~DvvLll---------------------k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPt 207 (253)
T 3frh_A 165 ----------------PAEAGDLALIF---------------------KLLPLLEREQAGSAMALLQSLNTPRMAVSFPT 207 (253)
T ss_dssp ----------------CCCBCSEEEEE---------------------SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEEC
T ss_pred ----------------CCCCcchHHHH---------------------HHHHHhhhhchhhHHHHHHHhcCCCEEEEcCh
Confidence 12579999861 11122334455556688889999766652 24
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
-|+
T Consensus 208 ksl 210 (253)
T 3frh_A 208 RSL 210 (253)
T ss_dssp C--
T ss_pred HHh
Confidence 455
No 274
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.57 E-value=4.9e-05 Score=81.68 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=67.2
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
+|.++||..++|+|+|-|+.|..|++.++ +.|+|+|+|.|+..+..+. |+...++.+++.+..++...
T Consensus 52 ~L~i~pggiyVD~TlG~GGHS~~iL~~lg--------~~GrVig~D~Dp~Al~~A~----rL~~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 52 GLNIRPDGIYIDGTFGRGGHSRLILSQLG--------EEGRLLAIDRDPQAIAVAK----TIDDPRFSIIHGPFSALGEY 119 (347)
T ss_dssp HTCCCTTCEEEESCCTTSHHHHHHHTTCC--------TTCEEEEEESCHHHHHHHT----TCCCTTEEEEESCGGGHHHH
T ss_pred hhCCCCCCEEEEeCcCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHH----hhcCCcEEEEeCCHHHHHHH
Confidence 46789999999999999999999998764 4799999999999998762 44446788888776665321
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCC
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG 188 (730)
- ... .....+|.||.|..||+
T Consensus 120 L--------------~~~-g~~~~vDgILfDLGVSS 140 (347)
T 3tka_A 120 V--------------AER-DLIGKIDGILLDLGVSS 140 (347)
T ss_dssp H--------------HHT-TCTTCEEEEEEECSCCH
T ss_pred H--------------Hhc-CCCCcccEEEECCccCH
Confidence 0 000 00125999999999986
No 275
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.54 E-value=0.00011 Score=76.65 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=75.0
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.+..+|||++||.|-.+..++.. .|...|+|+|+|...+..+++++.++|+. ..+...|...-
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~---------~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~------- 193 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL---------PAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLED------- 193 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC---------CTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTS-------
T ss_pred CCCceeeeeccCccHHHHHHHhh---------CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeeccc-------
Confidence 44669999999999887766432 25789999999999999999999999987 45555543321
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE-EEc
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV-YST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV-YST 235 (730)
.....||.||+- .....|-..|+..+.+.++.|++||.+| |=|
T Consensus 194 ---------------~p~~~~DvaL~l---------------------kti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 194 ---------------RLDEPADVTLLL---------------------KTLPCLETQQRGSGWEVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp ---------------CCCSCCSEEEET---------------------TCHHHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred ---------------CCCCCcchHHHH---------------------HHHHHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence 123679999871 0112233333435558899999988777 335
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
-|+
T Consensus 238 ksl 240 (281)
T 3lcv_B 238 KSL 240 (281)
T ss_dssp C--
T ss_pred hhh
Confidence 444
No 276
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.49 E-value=0.00019 Score=75.28 Aligned_cols=118 Identities=13% Similarity=0.021 Sum_probs=76.2
Q ss_pred CCEEEeecCCc--chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 79 DHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 79 g~~VLDmCAAP--GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
-..|||++||. |+.+.++++.+. |...|+++|.|+..+..++.++...+..++.+...|...++.+. .
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~--------P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l-~- 148 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVA--------PESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASIL-D- 148 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHC--------TTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHH-T-
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHC--------CCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhh-c-
Confidence 46999999997 556777777653 46899999999999998877665433346888888887642110 0
Q ss_pred CCCCCCcccccccccccccccc-----EEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEE
Q 004787 157 NFSSASDKGIESESNMGQLLFD-----RVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRI 231 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FD-----rVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrL 231 (730)
.......|| .|++ .+++-.-++. .....+|.+..+.|+|||+|
T Consensus 149 -------------~~~~~~~~D~~~p~av~~------~avLH~l~d~-------------~~p~~~l~~l~~~L~PGG~L 196 (277)
T 3giw_A 149 -------------APELRDTLDLTRPVALTV------IAIVHFVLDE-------------DDAVGIVRRLLEPLPSGSYL 196 (277)
T ss_dssp -------------CHHHHTTCCTTSCCEEEE------ESCGGGSCGG-------------GCHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccccccccCcCCcchHHh------hhhHhcCCch-------------hhHHHHHHHHHHhCCCCcEE
Confidence 000012233 3554 2333222211 11256899999999999999
Q ss_pred EEEcCCC
Q 004787 232 VYSTCSM 238 (730)
Q Consensus 232 VYSTCSl 238 (730)
+.|+-+-
T Consensus 197 vls~~~~ 203 (277)
T 3giw_A 197 AMSIGTA 203 (277)
T ss_dssp EEEEECC
T ss_pred EEEeccC
Confidence 9997654
No 277
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.49 E-value=0.00011 Score=75.73 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=54.1
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
..+++.++++|||+|||+|..|..|++. +.+.|+|+|+|+..+..++++ ...++.+.++|+..++
T Consensus 25 ~~~~~~~~~~VLDiG~G~G~lt~~L~~~----------~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 25 EELNIEEGNTVVEVGGGTGNLTKVLLQH----------PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFP 89 (249)
T ss_dssp HHTTCCTTCEEEEEESCHHHHHHHHTTS----------CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCC
T ss_pred HhcCCCCcCEEEEEcCchHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCC
Confidence 4567788999999999999999988654 236899999999999988775 3467899999988764
No 278
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=97.48 E-value=0.00027 Score=76.32 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=72.4
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||++||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|... |.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~---- 259 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY---------PSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GV---- 259 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC----
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC---------CCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CC----
Confidence 5678999999999999999998874 4578999999 655443221 2568888887654 10
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
. .. |.|++-- +...|... ...++|+++.+.|||||+|+...
T Consensus 260 -----------------p-~~-D~v~~~~-------------vlh~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 260 -----------------P-KG-DAIFIKW-------------ICHDWSDE-------HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp -----------------C-CC-SEEEEES-------------CGGGBCHH-------HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -----------------C-CC-CEEEEec-------------hhhcCCHH-------HHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 12 8888611 22333321 22578999999999999999887
Q ss_pred CCCC
Q 004787 236 CSMN 239 (730)
Q Consensus 236 CSl~ 239 (730)
..+.
T Consensus 301 ~~~~ 304 (368)
T 3reo_A 301 YILP 304 (368)
T ss_dssp CCCC
T ss_pred eccC
Confidence 6654
No 279
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.44 E-value=0.0002 Score=75.06 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=56.9
Q ss_pred hhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 71 ~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
+..+++.++++|||+|||+|..|..|++.... ..+.|+|+|+|+..+..++++. ..++.+.++|+..++
T Consensus 35 v~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~-------~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 35 VAAIRPERGERMVEIGPGLGALTGPVIARLAT-------PGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFD 103 (279)
T ss_dssp HHHHCCCTTCEEEEECCTTSTTHHHHHHHHCB-------TTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCC
T ss_pred HHhcCCCCcCEEEEEccccHHHHHHHHHhCCC-------cCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCC
Confidence 34567889999999999999999999987421 0256999999999999998873 467999999998865
No 280
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=97.43 E-value=0.00021 Score=75.30 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCCCCCEEEeecC------CcchHHHHHHHHHhcCCCCCCCCC-eEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccc
Q 004787 75 DVQPDHFVLDMCA------APGSKTFQLLEIIHQSTNPGALPN-GMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQ 147 (730)
Q Consensus 75 d~~pg~~VLDmCA------APGsKT~qLae~L~~~~~~~~~p~-G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~ 147 (730)
-+.-|++|||++| |||+. .++.+. |. +.|||+|+.+-- ...+ .++.+|..
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS~---VLr~~~--------p~g~~VVavDL~~~~-----------sda~-~~IqGD~~ 162 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGTA---VLRQWL--------PTGTLLVDSDLNDFV-----------SDAD-STLIGDCA 162 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHHH---HHHHHS--------CTTCEEEEEESSCCB-----------CSSS-EEEESCGG
T ss_pred eecCCCEEEeCCCCCCCCCCCcHH---HHHHhC--------CCCcEEEEeeCcccc-----------cCCC-eEEEcccc
Confidence 3456999999998 99992 344443 34 599999984311 0122 33566643
Q ss_pred cCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC
Q 004787 148 HFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV 227 (730)
Q Consensus 148 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp 227 (730)
.+ ....+||.||.|.-...+|.. ..+. .+... +-..+|.-|.+.|+|
T Consensus 163 ~~----------------------~~~~k~DLVISDMAPNtTG~~--D~d~------~Rs~~---L~ElALdfA~~~Lkp 209 (344)
T 3r24_A 163 TV----------------------HTANKWDLIISDMYDPRTKHV--TKEN------DSKEG---FFTYLCGFIKQKLAL 209 (344)
T ss_dssp GE----------------------EESSCEEEEEECCCCTTSCSS--CSCC------CCCCT---HHHHHHHHHHHHEEE
T ss_pred cc----------------------ccCCCCCEEEecCCCCcCCcc--ccch------hHHHH---HHHHHHHHHHHhCcC
Confidence 21 112679999999877777761 1110 01122 334466678889999
Q ss_pred CCEEEEE
Q 004787 228 GGRIVYS 234 (730)
Q Consensus 228 GGrLVYS 234 (730)
||.+|.=
T Consensus 210 GGsFvVK 216 (344)
T 3r24_A 210 GGSIAVK 216 (344)
T ss_dssp EEEEEEE
T ss_pred CCEEEEE
Confidence 9999864
No 281
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=97.42 E-value=0.00025 Score=76.48 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=71.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+.++.+|||++||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|... + +
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~--- 265 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY---------PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-S-V--- 265 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-C-C---
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC---------CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-C-C---
Confidence 5678999999999999999998874 3578999999 665543322 2567777777644 2 0
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
..||.|++- . ++..|.. ....++|+++.++|||||+|+.+.
T Consensus 266 -------------------~~~D~v~~~------~-------~lh~~~d-------~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 266 -------------------PQGDAMILK------A-------VCHNWSD-------EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp -------------------CCEEEEEEE------S-------SGGGSCH-------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCEEEEe------c-------ccccCCH-------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 128999972 1 1122221 122478999999999999999875
Q ss_pred CCC
Q 004787 236 CSM 238 (730)
Q Consensus 236 CSl 238 (730)
..+
T Consensus 307 ~~~ 309 (372)
T 1fp1_D 307 FIL 309 (372)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
No 282
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=97.40 E-value=0.00035 Score=75.42 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=72.2
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||+|||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|... |.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~---- 257 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY---------PTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EV---- 257 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CC----
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC---------CCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CC----
Confidence 6678999999999999999998874 4568999999 554432221 2578888887654 21
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
. .. |.|++- .+...|... .-.++|+++.+.|||||+|+...
T Consensus 258 -----------------p-~~-D~v~~~-------------~vlh~~~d~-------~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 258 -----------------P-SG-DTILMK-------------WILHDWSDQ-------HCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp -----------------C-CC-SEEEEE-------------SCGGGSCHH-------HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -----------------C-CC-CEEEeh-------------HHhccCCHH-------HHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 12 888861 122333321 22578999999999999999876
Q ss_pred CCCC
Q 004787 236 CSMN 239 (730)
Q Consensus 236 CSl~ 239 (730)
..+.
T Consensus 299 ~~~~ 302 (364)
T 3p9c_A 299 CILP 302 (364)
T ss_dssp CCBC
T ss_pred eccC
Confidence 6554
No 283
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=97.34 E-value=0.00037 Score=74.46 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=72.6
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCccc
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRA 154 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~ 154 (730)
++.++.+|||++||+|..+..+++.. |...++++|+ +..+..+++ .+++.+..+|... +
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~---- 243 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETF---------PKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-S---- 243 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-C----
T ss_pred ccccCceEEEeCCCccHHHHHHHHHC---------CCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-C----
Confidence 34678899999999999999998863 3568999999 766554332 2457777777543 1
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRI 231 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp---GGrL 231 (730)
. ..||.|++-- +...|.. ....++|+++.++||| ||+|
T Consensus 244 -----------------~--p~~D~v~~~~-------------~lh~~~d-------~~~~~~l~~~~~~L~p~~~gG~l 284 (352)
T 1fp2_A 244 -----------------I--PNADAVLLKY-------------ILHNWTD-------KDCLRILKKCKEAVTNDGKRGKV 284 (352)
T ss_dssp -----------------C--CCCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHHHSGGGCCCEE
T ss_pred -----------------C--CCccEEEeeh-------------hhccCCH-------HHHHHHHHHHHHhCCCCCCCcEE
Confidence 0 1399999711 1222321 1224789999999999 9999
Q ss_pred EEEcCCCC
Q 004787 232 VYSTCSMN 239 (730)
Q Consensus 232 VYSTCSl~ 239 (730)
+.+...+.
T Consensus 285 ~i~e~~~~ 292 (352)
T 1fp2_A 285 TIIDMVID 292 (352)
T ss_dssp EEEECEEC
T ss_pred EEEEeecC
Confidence 98765543
No 284
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.17 E-value=0.001 Score=70.43 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=82.1
Q ss_pred hhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEec
Q 004787 70 PPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----CTANLIVTNH 144 (730)
Q Consensus 70 p~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----g~~nv~vt~~ 144 (730)
+++++.+.| .+||=++.|-|+.+..++... +-..|+.+|+|+.-+.+++.-+..+ .-+++.+...
T Consensus 76 ~~l~~~p~p-k~VLIiGgGdG~~~revlk~~---------~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~ 145 (294)
T 3o4f_A 76 VPLLAHGHA-KHVLIIGGGDGAMLREVTRHK---------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID 145 (294)
T ss_dssp HHHHHSSCC-CEEEEESCTTSHHHHHHHTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred HHHhhCCCC-CeEEEECCCchHHHHHHHHcC---------CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence 345555554 589999999999877765431 2468999999999999988776443 2367999999
Q ss_pred ccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhh
Q 004787 145 EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISL 224 (730)
Q Consensus 145 Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~l 224 (730)
||..|-.. ...+||.|++|.+- ..|. . ..| ...+....+.+.
T Consensus 146 Dg~~~l~~--------------------~~~~yDvIi~D~~d-p~~~-------------~--~~L--~t~eFy~~~~~~ 187 (294)
T 3o4f_A 146 DGVNFVNQ--------------------TSQTFDVIISDCTD-PIGP-------------G--ESL--FTSAFYEGCKRC 187 (294)
T ss_dssp CTTTTTSC--------------------SSCCEEEEEESCCC-CCCT-------------T--CCS--SCCHHHHHHHHT
T ss_pred hHHHHHhh--------------------ccccCCEEEEeCCC-cCCC-------------c--hhh--cCHHHHHHHHHH
Confidence 99987431 12679999999862 1121 1 111 123456777889
Q ss_pred ccCCCEEEEE
Q 004787 225 LKVGGRIVYS 234 (730)
Q Consensus 225 LKpGGrLVYS 234 (730)
|+|||.+|.-
T Consensus 188 L~p~Gv~v~q 197 (294)
T 3o4f_A 188 LNPGGIFVAQ 197 (294)
T ss_dssp EEEEEEEEEE
T ss_pred hCCCCEEEEe
Confidence 9999999964
No 285
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=97.15 E-value=0.00025 Score=67.54 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=71.1
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
-+++++|++|||+++|.. ++|+++..+..++++.. .++.+...|+..++..
T Consensus 7 ~~g~~~g~~vL~~~~g~v-------------------------~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~ 57 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKSS-------------------------PVEALKGLVDKLQALTG----NEGRVSVENIKQLLQS 57 (176)
T ss_dssp TTTCCTTSEEEEEECTTS-------------------------CHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGG
T ss_pred ccCCCCCCEEEEecCCce-------------------------eeeCCHHHHHHHHHhcc----cCcEEEEechhcCccc
Confidence 356789999999998741 26777777777766532 2467777777664320
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
......||.|++-. ++. |-..+ ..++|.++.++|||||+++
T Consensus 58 ------------------~~~~~~fD~V~~~~------~l~--------~~~~~-------~~~~l~~~~r~LkpgG~l~ 98 (176)
T 2ld4_A 58 ------------------AHKESSFDIILSGL------VPG--------STTLH-------SAEILAEIARILRPGGCLF 98 (176)
T ss_dssp ------------------CCCSSCEEEEEECC------STT--------CCCCC-------CHHHHHHHHHHEEEEEEEE
T ss_pred ------------------cCCCCCEeEEEECC------hhh--------hcccC-------HHHHHHHHHHHCCCCEEEE
Confidence 01236799999721 111 10000 1468999999999999999
Q ss_pred EEcCCCCC------CCcHHHHHHHHHHCCC
Q 004787 233 YSTCSMNP------VENEAVVAEILRKCEG 256 (730)
Q Consensus 233 YSTCSl~p------~ENEaVV~~~L~~~~~ 256 (730)
.+.-.... .-..+-+...|++.|-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 99 LKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred EEcccccccccccccCCHHHHHHHHHHCCC
Confidence 85321110 0124556677777764
No 286
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.13 E-value=0.00016 Score=74.58 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=51.8
Q ss_pred hccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCC
Q 004787 72 LFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 150 (730)
Q Consensus 72 llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp 150 (730)
..+++.++++|||+|||+|..|. ++ . . +.+.|+|+|+|+..+..+++++... +++.+.++|+..++
T Consensus 15 ~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~--------~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 15 SAINPQKGQAMVEIGPGLAALTE-PV-G-E--------RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHCCCTTCCEEEECCTTTTTHH-HH-H-T--------TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCC
T ss_pred HhcCCCCcCEEEEECCCCcHHHH-hh-h-C--------CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCC
Confidence 34577899999999999999999 53 3 1 1234999999999999988766432 57999999988754
No 287
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.05 E-value=0.0016 Score=66.70 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=30.5
Q ss_pred CCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC
Q 004787 75 DVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD 120 (730)
Q Consensus 75 d~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d 120 (730)
.++|+++|||++|||||+|..++...+ ...|+|+|+-
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g---------~~~V~avdvG 111 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKK---------VTEVRGYTKG 111 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTT---------EEEEEEECCC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcC---------CCEEEEEecC
Confidence 357999999999999999988776533 3589999984
No 288
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=97.03 E-value=0.0013 Score=70.27 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..++.+|||++||+|..+..+++.. |...++++|+ +..+..++. .+++.+..+|... +.
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~---- 249 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIF---------PHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SI---- 249 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHC---------TTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CC----
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHC---------CCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CC----
Confidence 4567899999999999999998874 3568999998 554432221 2457777776543 20
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccC---CCEEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV---GGRIV 232 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp---GGrLV 232 (730)
..||.|++-- ++..|.. ....++|+++.+.|+| ||+|+
T Consensus 250 -------------------~~~D~v~~~~-------------vlh~~~d-------~~~~~~l~~~~~~L~p~~~gG~l~ 290 (358)
T 1zg3_A 250 -------------------PSADAVLLKW-------------VLHDWND-------EQSLKILKNSKEAISHKGKDGKVI 290 (358)
T ss_dssp -------------------CCCSEEEEES-------------CGGGSCH-------HHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred -------------------CCceEEEEcc-------------cccCCCH-------HHHHHHHHHHHHhCCCCCCCcEEE
Confidence 2489999721 1222321 1224789999999999 99999
Q ss_pred EEcCCC
Q 004787 233 YSTCSM 238 (730)
Q Consensus 233 YSTCSl 238 (730)
.....+
T Consensus 291 i~e~~~ 296 (358)
T 1zg3_A 291 IIDISI 296 (358)
T ss_dssp EEECEE
T ss_pred EEEecc
Confidence 876554
No 289
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.03 E-value=0.00073 Score=77.34 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=59.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.+-+|||+|||.|-.|..||++ ...|+++|.++..+..++..++..|..++.+...++..+..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-----------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~------ 128 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-----------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIA------ 128 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHH------
T ss_pred CCCeEEEECCCCcHHHHHHHhC-----------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhh------
Confidence 4569999999999999998875 36899999999999999988887776678888877765421
Q ss_pred CCCCCccccccccccccccccEEEe
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLC 182 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~ 182 (730)
......||+|+|
T Consensus 129 -------------~~~~~~fD~v~~ 140 (569)
T 4azs_A 129 -------------ALEEGEFDLAIG 140 (569)
T ss_dssp -------------HCCTTSCSEEEE
T ss_pred -------------hccCCCccEEEE
Confidence 112367999997
No 290
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.99 E-value=0.0014 Score=71.53 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=90.6
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-----C---CCceEEEecccccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-----C---TANLIVTNHEAQHF 149 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-----g---~~nv~vt~~Da~~f 149 (730)
+..+||=++.|-|+....++.. +...|+.+|+|+.-+++++.-+..+ . .+++.+...||..|
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh----------~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f 274 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL----------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV 274 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT----------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc----------CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH
Confidence 4579999999999977766542 2468999999999999887654221 1 13478888888775
Q ss_pred CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 150 PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 150 p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
-.- ......+||.|++|++-...++ .|. .....-...+.+..+.+.|+|||
T Consensus 275 l~~-----------------~~~~~~~yDvIIvDl~D~~~s~---~p~---------g~a~~Lft~eFy~~~~~~L~p~G 325 (381)
T 3c6k_A 275 LKR-----------------YAKEGREFDYVINDLTAVPIST---SPE---------EDSTWEFLRLILDLSMKVLKQDG 325 (381)
T ss_dssp HHH-----------------HHHHTCCEEEEEEECCSSCCCC---C-------------CHHHHHHHHHHHHHHTEEEEE
T ss_pred HHh-----------------hhhccCceeEEEECCCCCcccC---ccc---------CcchHHHHHHHHHHHHHhcCCCC
Confidence 310 0112357999999975211111 000 01122345678888999999999
Q ss_pred EEEE-EcCCCCCCCcHHHHHHHHHHCCCcEEEEecCccCCc
Q 004787 230 RIVY-STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQ 269 (730)
Q Consensus 230 rLVY-STCSl~p~ENEaVV~~~L~~~~~~velvd~s~~lP~ 269 (730)
.+|. +.|-..+ +.-..+.+.|++.-..+.........|.
T Consensus 326 Vlv~Q~~s~~~~-~~~~~i~~tl~~vF~~v~~~~~~~~VPS 365 (381)
T 3c6k_A 326 KYFTQGNCVNLT-EALSLYEEQLGRLYCPVEFSKEIVCVPS 365 (381)
T ss_dssp EEEEEEEETTCH-HHHHHHHHHHTTSSSCEEEEEEEECCGG
T ss_pred EEEEecCCCcch-hHHHHHHHHHHHhCCcceEeeEEEEecC
Confidence 9986 3443332 2223344555554444544332223454
No 291
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.88 E-value=0.0033 Score=66.06 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=95.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH--------------------------HHHHHHHHHHH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV--------------------------QRCNLLIHQTK 132 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~--------------------------~Rl~~L~~nlk 132 (730)
...||.++++-|.-++.+++++.... .+.+.|+++|... .+...++.+++
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g----~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~ 182 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHD----VRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR 182 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTT----CCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcC----CCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence 34999999999999999998875310 1257899999631 15677889999
Q ss_pred HcCC--CceEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccc
Q 004787 133 RMCT--ANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNG 209 (730)
Q Consensus 133 Rlg~--~nv~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~ 209 (730)
+.|. .++.+..+++.. +|. .....||.|.+|+-
T Consensus 183 ~~gl~~~~I~li~Gda~etL~~--------------------~~~~~~d~vfIDaD------------------------ 218 (282)
T 2wk1_A 183 NYDLLDEQVRFLPGWFKDTLPT--------------------APIDTLAVLRMDGD------------------------ 218 (282)
T ss_dssp HTTCCSTTEEEEESCHHHHSTT--------------------CCCCCEEEEEECCC------------------------
T ss_pred HcCCCcCceEEEEeCHHHHHhh--------------------CCCCCEEEEEEcCC------------------------
Confidence 9997 679999998865 221 11257999999862
Q ss_pred hHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEEEec
Q 004787 210 LHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 263 (730)
Q Consensus 210 L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~velvd~ 263 (730)
...-....|...+.+|+|||.||.=-....+.+ -.-|.+++++.+-.+.+..+
T Consensus 219 ~y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~-~~Av~Ef~~~~~i~~~i~~~ 271 (282)
T 2wk1_A 219 LYESTWDTLTNLYPKVSVGGYVIVDDYMMCPPC-KDAVDEYRAKFDIADELITI 271 (282)
T ss_dssp SHHHHHHHHHHHGGGEEEEEEEEESSCTTCHHH-HHHHHHHHHHTTCCSCCEEC
T ss_pred ccccHHHHHHHHHhhcCCCEEEEEcCCCCCHHH-HHHHHHHHHhcCCceEEEEe
Confidence 111224578889999999999997554433544 34457778877655555443
No 292
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.74 E-value=0.0037 Score=65.89 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=30.1
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~ 121 (730)
++++..|||++|||||+|..++...+ ...|+|+|+-.
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~g---------v~~V~avdvG~ 128 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKR---------VQEVRGYTKGG 128 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTT---------EEEEEEECCCS
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcC---------CCEEEEEEcCC
Confidence 57899999999999999987766532 35899999843
No 293
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=96.69 E-value=0.0033 Score=72.96 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=81.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~-nv~vt~~Da~~fp~~~~~~~ 157 (730)
+..|||++||.|--+...+.+.... ...-+|+|+|.++. +..+.+..+..+.. .|.|+.+|...+.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~-----~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~------- 424 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQA-----DRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWV------- 424 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHT-----TCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCC-------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhc-----CCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceecc-------
Confidence 3479999999998744433332221 01347999999985 44555667777764 4889999887642
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
.+.++|.|+...= |.+ .+......+|..+-++|||||.++=+.|+
T Consensus 425 ---------------LPEKVDIIVSEwM----G~f----------------Ll~E~mlevL~Ardr~LKPgGimiPs~at 469 (637)
T 4gqb_A 425 ---------------APEKADIIVSELL----GSF----------------ADNELSPECLDGAQHFLKDDGVSIPGEYT 469 (637)
T ss_dssp ---------------CSSCEEEEECCCC----BTT----------------BGGGCHHHHHHHHGGGEEEEEEEESCEEE
T ss_pred ---------------CCcccCEEEEEcC----ccc----------------ccccCCHHHHHHHHHhcCCCcEEccccce
Confidence 1268999997432 211 11122246788888999999999966666
Q ss_pred --CCCCCcHHHHHHH
Q 004787 238 --MNPVENEAVVAEI 250 (730)
Q Consensus 238 --l~p~ENEaVV~~~ 250 (730)
+.|.+.+..-.+.
T Consensus 470 lyiapi~~~~l~~e~ 484 (637)
T 4gqb_A 470 SFLAPISSSKLYNEV 484 (637)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred EEEEEecCHHHHHHH
Confidence 4588887765544
No 294
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=96.62 E-value=0.0018 Score=69.60 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=52.8
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
.+|||+|||.|+.+..+..+ +- .-..|+|+|+++..+...++|.. +..+.+.|...+..-
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~-------~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~------- 62 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CI-------PAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLE------- 62 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TC-------SEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHH-------
T ss_pred CeEEEeCcCccHHHHHHHHC-CC-------CceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHh-------
Confidence 48999999999999887654 10 01379999999999999988753 333556666554210
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCccc
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlr 193 (730)
......+|.|+.++||-+-....
T Consensus 63 -----------~~~~~~~D~l~~gpPCq~fS~ag 85 (343)
T 1g55_A 63 -----------EFDRLSFDMILMSPPCQPFTRIG 85 (343)
T ss_dssp -----------HHHHHCCSEEEECCC--------
T ss_pred -----------HcCcCCcCEEEEcCCCcchhhcC
Confidence 01112699999999998876653
No 295
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=96.57 E-value=0.0054 Score=66.86 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=58.6
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
.+|||+|||.|+.+.-+..+ + --.|.|+|+++..+..+++|. ++..+.+.|...+..-.+.
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G---------~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~---- 63 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G---------FDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIK---- 63 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T---------CEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHH----
T ss_pred CeEEEEccCcCHHHHHHHHC-C---------CcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHH----
Confidence 58999999999999887654 1 246889999999999888764 3456667777664321000
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCcccc
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
........+|.|+.++||-+--...+
T Consensus 64 ---------~~~~~~~~~D~i~ggpPCQ~fS~ag~ 89 (376)
T 3g7u_A 64 ---------GFFKNDMPIDGIIGGPPCQGFSSIGK 89 (376)
T ss_dssp ---------HHHCSCCCCCEEEECCCCCTTC----
T ss_pred ---------hhcccCCCeeEEEecCCCCCcccccC
Confidence 00001257999999999988765433
No 296
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=96.55 E-value=0.0047 Score=66.06 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=57.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
+.+|||+|||.|+.+..+..+ + --.|+|+|+++..+..+++|..... +.|...+..-
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G---------~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~------ 67 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G---------AECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEK------ 67 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T---------CEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGG------
T ss_pred CCcEEEECCCcCHHHHHHHHC-C---------CeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHh------
Confidence 568999999999998887543 1 3579999999999999998863211 4555543210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCcccc
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK 194 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk 194 (730)
....+|.|+.++||-+--...+
T Consensus 68 --------------~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 68 --------------TIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp --------------GSCCCSEEEEECCCTTTCTTSC
T ss_pred --------------hCCCCCEEEECCCCCCcchhcc
Confidence 1135899999999988765543
No 297
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=96.53 E-value=0.00051 Score=72.17 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=80.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
+..|||++||+|.....++. . ..+++.+|.+++.+..|++|++. ..++.|.+.|+..+...
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS---~--------~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~------ 152 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR---S--------QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNA------ 152 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC---T--------TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHH------
T ss_pred CCCceeEeCCcHHHHHHHcC---C--------CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHH------
Confidence 55799999999998776643 2 36899999999999999999865 35688998887653210
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
......+||.||+|||.--.+. + ..-.+.|..+. .+.++|+++. +
T Consensus 153 -----------l~~~~~~fdLVfiDPPYe~k~~-------~------------~~vl~~L~~~~-~r~~~Gi~v~----W 197 (283)
T 2oo3_A 153 -----------LLPPPEKRGLIFIDPSYERKEE-------Y------------KEIPYAIKNAY-SKFSTGLYCV----W 197 (283)
T ss_dssp -----------HCSCTTSCEEEEECCCCCSTTH-------H------------HHHHHHHHHHH-HHCTTSEEEE----E
T ss_pred -----------hcCCCCCccEEEECCCCCCCcH-------H------------HHHHHHHHHhC-ccCCCeEEEE----E
Confidence 0011246999999999532121 0 11122333333 4567898875 4
Q ss_pred CCCCcHHHHHHHHHH
Q 004787 239 NPVENEAVVAEILRK 253 (730)
Q Consensus 239 ~p~ENEaVV~~~L~~ 253 (730)
.|+-+..-+..++++
T Consensus 198 YPi~~~~~~~~~~~~ 212 (283)
T 2oo3_A 198 YPVVNKAWTEQFLRK 212 (283)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EeccchHHHHHHHHH
Confidence 566666666666654
No 298
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.49 E-value=0.0033 Score=73.47 Aligned_cols=136 Identities=11% Similarity=0.080 Sum_probs=87.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCC---C-CCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEecccccCCCcc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQST---N-PGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCR 153 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~---~-~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n-v~vt~~Da~~fp~~~ 153 (730)
+..|||++||.|-.+..++.+..... . .......+|+|+|.++.....++...+ .+..+ |.|+.+|...+..-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp- 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI- 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc-
Confidence 35899999999998754433332100 0 000124599999999987777766554 56544 88999988774210
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
. ......++|.|++.-- |. ..+..++.+.|..+-++|||||.++=
T Consensus 488 ~---------------~~~~~ekVDIIVSElm----Gs----------------fl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 488 A---------------KDRGFEQPDIIVSELL----GS----------------FGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp H---------------HHTTCCCCSEEEECCC----BT----------------TBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred c---------------ccCCCCcccEEEEecc----cc----------------ccchhccHHHHHHHHHhCCCCcEEEC
Confidence 0 0011368999998432 21 12334556788888899999999995
Q ss_pred EcCC--CCCCCcHHHHHHHH
Q 004787 234 STCS--MNPVENEAVVAEIL 251 (730)
Q Consensus 234 STCS--l~p~ENEaVV~~~L 251 (730)
+.|+ +.|++.+..-.++.
T Consensus 533 ~~~t~ylaPi~~~~l~~~v~ 552 (745)
T 3ua3_A 533 QKYTSYVKPIMSTHIHQTIK 552 (745)
T ss_dssp CEEEEEEEEEECHHHHHHHH
T ss_pred CccEEEEEEecCHHHHHHHH
Confidence 5555 66899988755543
No 299
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.38 E-value=0.015 Score=61.90 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHH--------HHHHHH-HHHHc---CCCc--eEEEe
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR--------CNLLIH-QTKRM---CTAN--LIVTN 143 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~R--------l~~L~~-nlkRl---g~~n--v~vt~ 143 (730)
+.-+|||+|=|+|--++..+..+... .+ ...-..+++|.++-+ ...+.+ ...+. ...+ +.+..
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~-~~--~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~ 172 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEV-NP--KLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLL 172 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHH-CT--TCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEE
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHh-CC--CcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEe
Confidence 34589999999998765544332211 00 112356788864211 111111 12222 1122 34556
Q ss_pred ccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHH
Q 004787 144 HEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGI 222 (730)
Q Consensus 144 ~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl 222 (730)
+|+.. ++.+ ....||.|++|+= .-++||++|.. .++....
T Consensus 173 GDa~~~l~~l--------------------~~~~~Da~flDgF-----sP~kNPeLWs~--------------e~f~~l~ 213 (308)
T 3vyw_A 173 GDARKRIKEV--------------------ENFKADAVFHDAF-----SPYKNPELWTL--------------DFLSLIK 213 (308)
T ss_dssp SCHHHHGGGC--------------------CSCCEEEEEECCS-----CTTTSGGGGSH--------------HHHHHHH
T ss_pred chHHHHHhhh--------------------cccceeEEEeCCC-----CcccCcccCCH--------------HHHHHHH
Confidence 66654 2211 1247999999971 22789999864 6889999
Q ss_pred hhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEE
Q 004787 223 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVE 259 (730)
Q Consensus 223 ~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~ve 259 (730)
++++|||+++--||+ ..|...|...|-.|+
T Consensus 214 ~~~~pgg~laTYtaa-------g~VRR~L~~aGF~V~ 243 (308)
T 3vyw_A 214 ERIDEKGYWVSYSSS-------LSVRKSLLTLGFKVG 243 (308)
T ss_dssp TTEEEEEEEEESCCC-------HHHHHHHHHTTCEEE
T ss_pred HHhCCCcEEEEEeCc-------HHHHHHHHHCCCEEE
Confidence 999999999855555 789999999885443
No 300
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.54 E-value=0.023 Score=59.40 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=40.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
.+|+.|||.+||+|..+..++.+ ...++++|+++..+..++.++++..
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~-----------g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW-----------GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-----------CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 68999999999999977765543 3589999999999999999988763
No 301
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=94.84 E-value=0.067 Score=56.71 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=63.4
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
.+++|++||-.+||+ |..++|+|..++ ..|++.|.+.+|.+.+ +.+|...+. .+...+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~----~~lGa~~v~---~~~~~~---- 231 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG----------AEVSVFARNEHKKQDA----LSMGVKHFY---TDPKQC---- 231 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT----------CEEEEECSSSTTHHHH----HHTTCSEEE---SSGGGC----
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHH----HhcCCCeec---CCHHHH----
Confidence 689999999998866 666777777642 4899999999998866 457866443 222111
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
...||.|+- |+|... .+..++++|++||++|.
T Consensus 232 --------------------~~~~D~vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~ 263 (348)
T 3two_A 232 --------------------KEELDFIIS---TIPTHY-------------------------DLKDYLKLLTYNGDLAL 263 (348)
T ss_dssp --------------------CSCEEEEEE---CCCSCC-------------------------CHHHHHTTEEEEEEEEE
T ss_pred --------------------hcCCCEEEE---CCCcHH-------------------------HHHHHHHHHhcCCEEEE
Confidence 026898874 444321 25568899999999986
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
.
T Consensus 264 ~ 264 (348)
T 3two_A 264 V 264 (348)
T ss_dssp C
T ss_pred E
Confidence 4
No 302
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=94.75 E-value=0.031 Score=59.95 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=55.5
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
.+|+|+|||.|+.+.-+..+ +- ..-.|.|+|+|+..+...++|.. ...+.+.|...+..-
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~-------~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~------- 63 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GL-------DGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQ------- 63 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TC-------SEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHH-------
T ss_pred CEEEEECcCccHHHHHHHHc-CC-------CceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHH-------
Confidence 37999999999998877543 10 01358899999999998887642 223445665553210
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
......+|.|+..+||-+--..
T Consensus 64 -----------~~~~~~~D~l~ggpPCQ~fS~a 85 (333)
T 4h0n_A 64 -----------VIKKWNVDTILMSPPCQPFTRN 85 (333)
T ss_dssp -----------HHHHTTCCEEEECCCCCCSEET
T ss_pred -----------HhccCCCCEEEecCCCcchhhh
Confidence 1111369999999999886443
No 303
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=94.72 E-value=0.039 Score=58.18 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM-VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~-VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
....+|||+|||.|+.+.-+..+ +- .-. |+|+|+++..+...+.|. +...+...|...+..-.+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~--------~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i- 78 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GI--------QVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHI- 78 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TB--------CEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHH-
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CC--------ccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHh-
Confidence 45679999999999998776442 21 122 799999999999887763 334566677766432110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
.....+|.|+..+||-+--..
T Consensus 79 ----------------~~~~~~Dll~ggpPCQ~fS~a 99 (295)
T 2qrv_A 79 ----------------QEWGPFDLVIGGSPCNDLSIV 99 (295)
T ss_dssp ----------------HHTCCCSEEEECCCCGGGBTT
T ss_pred ----------------cccCCcCEEEecCCCcccccc
Confidence 011469999999999875443
No 304
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=94.63 E-value=0.07 Score=56.30 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=65.9
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
..+++|++||-.+||+ |..++|+|..++ ..|++.|.+.+|++.+ +++|...+ ++.....+..
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~----~~lGa~~~--i~~~~~~~~~- 224 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMG----------LRVAAVDIDDAKLNLA----RRLGAEVA--VNARDTDPAA- 224 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTT----------CEEEEEESCHHHHHHH----HHTTCSEE--EETTTSCHHH-
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHH----HHcCCCEE--EeCCCcCHHH-
Confidence 3678999999999876 777888887653 4899999999999865 45776532 2222111100
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
........+|.|+- |+|.+ ..+..++++|++||++|
T Consensus 225 ----------------~~~~~~g~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~iv 260 (340)
T 3s2e_A 225 ----------------WLQKEIGGAHGVLV---TAVSP-------------------------KAFSQAIGMVRRGGTIA 260 (340)
T ss_dssp ----------------HHHHHHSSEEEEEE---SSCCH-------------------------HHHHHHHHHEEEEEEEE
T ss_pred ----------------HHHHhCCCCCEEEE---eCCCH-------------------------HHHHHHHHHhccCCEEE
Confidence 00001136898876 33322 24677889999999998
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
..
T Consensus 261 ~~ 262 (340)
T 3s2e_A 261 LN 262 (340)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 305
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=94.60 E-value=0.074 Score=56.92 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=40.3
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+||+ |..++|+|..++ ...|+++|.+.+|+++++ ++|..
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~ 237 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCG---------ASIIIAVDIVESRLELAK----QLGAT 237 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHH----HcCCC
Confidence 4689999999999877 777888887754 237999999999988764 46754
No 306
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=94.52 E-value=0.072 Score=57.25 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=66.0
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
..+++|++||=.+||+ |..++|+|.+++ ...|++.|.+.+|..+++ .+|...+ .+.....+...
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~ 242 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAG---------ATTVILSTRQATKRRLAE----EVGATAT--VDPSAGDVVEA 242 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCHHHHHHHH----HHTCSEE--ECTTSSCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HcCCCEE--ECCCCcCHHHH
Confidence 4789999999998866 666777777643 248999999999988654 4776532 22211111000
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
+.. ........||.|+- |+|.+ ..+..++++|++||++|
T Consensus 243 -i~~------------~~~~~~gg~Dvvid---~~G~~-------------------------~~~~~~~~~l~~~G~vv 281 (370)
T 4ej6_A 243 -IAG------------PVGLVPGGVDVVIE---CAGVA-------------------------ETVKQSTRLAKAGGTVV 281 (370)
T ss_dssp -HHS------------TTSSSTTCEEEEEE---CSCCH-------------------------HHHHHHHHHEEEEEEEE
T ss_pred -HHh------------hhhccCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhccCCEEE
Confidence 000 00011137999985 45433 24667899999999998
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
..
T Consensus 282 ~~ 283 (370)
T 4ej6_A 282 IL 283 (370)
T ss_dssp EC
T ss_pred EE
Confidence 63
No 307
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=94.49 E-value=0.089 Score=57.71 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=53.7
Q ss_pred ccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc---CC-CceEEEeccc
Q 004787 73 FLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM---CT-ANLIVTNHEA 146 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl---g~-~nv~vt~~Da 146 (730)
++.+++++.|+|++|.-|..|..++..+.. +.++|+|+|.++.-...|++|++.+ +. .++.+.+...
T Consensus 221 i~~l~~~~~viDvGAn~G~~s~~~a~~~~~-------~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 221 LLRFSDSEKMVDCGASIGESLAGLIGVTKG-------KFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp SCCCCSSCEEEEETCTTSHHHHHHHHHHTS-------CCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred ccccCCCCEEEECCCCcCHHHHHHHHHhcC-------CCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 456789999999999999999988744332 1489999999999999999999882 35 6777765533
No 308
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=94.45 E-value=0.089 Score=56.01 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=40.1
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
+++++|++||-.+||+ |..++|+|..++ ...|++.|.+..|+.+++ .+|...
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~~ 219 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG---------AAQVVVTDLSATRLSKAK----EIGADL 219 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HhCCCE
Confidence 4789999999999876 666777777643 248999999999988663 577653
No 309
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=94.29 E-value=0.069 Score=56.13 Aligned_cols=77 Identities=8% Similarity=0.058 Sum_probs=55.1
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCCC
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFS 159 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~~ 159 (730)
++|||++||.||.+.-+-++ + --.|.|+|+|+..+...++|. +. .+..+|...+..-
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G---------~~~v~a~e~d~~a~~ty~~N~-----~~-~~~~~DI~~i~~~------- 57 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G---------FRIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSD------- 57 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T---------CEEEEEEECCTTTHHHHHHHC-----CS-EEEESCGGGCCGG-------
T ss_pred CeEEEeCcCccHHHHHHHHC-C---------CEEEEEEeCCHHHHHHHHHHC-----CC-CcccCChhhCCHh-------
Confidence 47999999999988776332 1 246889999999999988763 22 4556676654321
Q ss_pred CCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 160 SASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 160 ~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
....+|.|+.-+||-+--..
T Consensus 58 -------------~~~~~D~l~ggpPCQ~fS~a 77 (331)
T 3ubt_Y 58 -------------EFPKCDGIIGGPPSQSWSEG 77 (331)
T ss_dssp -------------GSCCCSEEECCCCGGGTEET
T ss_pred -------------hCCcccEEEecCCCCCcCCC
Confidence 12468999999999886443
No 310
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=94.28 E-value=0.15 Score=55.56 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhc----CC--CCCCCCCeEEEEEeCCHHHHHHHHHHH
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQ----ST--NPGALPNGMVIANDLDVQRCNLLIHQT 131 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~----~~--~~~~~p~G~VvAnD~d~~Rl~~L~~nl 131 (730)
..+|+|++||+|.-|+.++..+-. .. .....|.-.|+.||+-..-...|-..+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L 111 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL 111 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh
Confidence 689999999999999998654421 00 001135688999998666555554443
No 311
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=94.21 E-value=0.049 Score=55.79 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=38.7
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
..+|+.|||.+||+|+.+..++. + ...++++|+++..+..++.+++..+
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~-~----------gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKK-L----------GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHH-T----------TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCCEEEECCCCCCHHHHHHHH-c----------CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 37899999999999986555433 3 2589999999999999999887554
No 312
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=94.18 E-value=0.31 Score=53.21 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCEEEeecCCcchHHHHHHHHH----hcCCC----CCCCCCeEEEEEeCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEII----HQSTN----PGALPNGMVIANDLD 120 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L----~~~~~----~~~~p~G~VvAnD~d 120 (730)
..+|+|++||.|.-|+.++..+ ..... ....|.-.|+.||+-
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 4799999999999999887663 21100 001357889999986
No 313
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=94.09 E-value=0.094 Score=55.44 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=66.3
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcc
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCR 153 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~ 153 (730)
.+++|++||=.+||+ |..++|+|..++ ...|++.|.+.+|+.++ +++|...+ .+.+. .+.. .
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g---------~~~Vi~~~~~~~~~~~~----~~lGa~~~--i~~~~-~~~~-~ 230 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS---------AARVIAVDLDDDRLALA----REVGADAA--VKSGA-GAAD-A 230 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC---------CCEEEEEESCHHHHHHH----HHTTCSEE--EECST-THHH-H
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHH----HHcCCCEE--EcCCC-cHHH-H
Confidence 678999999998876 777888887763 25899999999999876 45776543 22211 1100 0
Q ss_pred cCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEE
Q 004787 154 ANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 233 (730)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVY 233 (730)
+ ........||.|+- |+|.. ..+..++++|++||++|.
T Consensus 231 v--------------~~~t~g~g~d~v~d---~~G~~-------------------------~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 231 I--------------RELTGGQGATAVFD---FVGAQ-------------------------STIDTAQQVVAVDGHISV 268 (345)
T ss_dssp H--------------HHHHGGGCEEEEEE---SSCCH-------------------------HHHHHHHHHEEEEEEEEE
T ss_pred H--------------HHHhCCCCCeEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 0 00011236998885 44421 246778999999999986
Q ss_pred E
Q 004787 234 S 234 (730)
Q Consensus 234 S 234 (730)
.
T Consensus 269 ~ 269 (345)
T 3jv7_A 269 V 269 (345)
T ss_dssp C
T ss_pred E
Confidence 4
No 314
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=94.09 E-value=0.063 Score=57.03 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=64.4
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGC 152 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~ 152 (730)
..+++|++||=.+||+ |..++|+|..++ ...|+++|.+.+|+.+++ ++|... +++.....+...
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~ 226 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG---------AGRIFAVGSRKHCCDIAL----EYGATD--IINYKNGDIVEQ 226 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTT---------CSSEEEECCCHHHHHHHH----HHTCCE--EECGGGSCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHHH----HhCCce--EEcCCCcCHHHH
Confidence 4689999999998765 556667666532 247999999999987664 467643 233222111100
Q ss_pred ccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 153 RANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
+ ........||.|+- |+|.. ..+..++++|++||++|
T Consensus 227 -v--------------~~~t~g~g~D~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v 263 (352)
T 3fpc_A 227 -I--------------LKATDGKGVDKVVI---AGGDV-------------------------HTFAQAVKMIKPGSDIG 263 (352)
T ss_dssp -H--------------HHHTTTCCEEEEEE---CSSCT-------------------------THHHHHHHHEEEEEEEE
T ss_pred -H--------------HHHcCCCCCCEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEE
Confidence 0 00011236999984 44432 14667889999999998
Q ss_pred EE
Q 004787 233 YS 234 (730)
Q Consensus 233 YS 234 (730)
..
T Consensus 264 ~~ 265 (352)
T 3fpc_A 264 NV 265 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 63
No 315
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=94.06 E-value=0.18 Score=54.55 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=40.6
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
+++++|++||-.+||+ |..++|+|..++ .+.|+++|.+..|+++++ ++|.
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa 231 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG---------AACVIVGDQNPERLKLLS----DAGF 231 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHH----TTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HcCC
Confidence 4789999999999887 778888888754 248999999999988653 4676
No 316
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=94.03 E-value=0.042 Score=58.77 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEE-EEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMV-IANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~V-vAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
..+|+|+|||.|+.+.-+..+ + .+.-.| .|+|+|+..+...++|... . +.+.|...+..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G-------~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~------ 69 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-S-------ININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISI------ 69 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-S-------CCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCH------
T ss_pred CCEEEEECCChhHHHHHHHHc-C-------CCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCH------
Confidence 458999999999998776442 1 001256 7999999999999887521 1 33455544321
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD 189 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd 189 (730)
.......+|.|+..+||-+-
T Consensus 70 ------------~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 70 ------------KQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp ------------HHHHHTCCCEEEECCCCTTC
T ss_pred ------------HHhccCCCCEEEecCCccCc
Confidence 01111369999999999987
No 317
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=93.78 E-value=0.077 Score=57.00 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=40.0
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||=++||+ |..++|+|..++ ...|+++|.+..|++++ +++|...
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~G---------a~~Vi~~~~~~~~~~~a----~~lGa~~ 241 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAG---------ASRIIGIDIDSKKYETA----KKFGVNE 241 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHT---------CSCEEEECSCTTHHHHH----HTTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHH----HHcCCcE
Confidence 4688999999998865 667777777654 24799999999998865 4577653
No 318
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=93.74 E-value=0.087 Score=56.97 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=50.0
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 149 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~f 149 (730)
+++.||+++.|+|..|..|++... ...|+|+|+|..-+..|.+.. ...++.++++|+..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~---------~~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC---------PRQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC---------CSEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC---------CCEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccch
Confidence 469999999999999999998643 258999999999888887765 246899999998654
No 319
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=93.65 E-value=0.23 Score=52.25 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=38.6
Q ss_pred cCCCCCCEEEeecCCcch-HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+||+.+ .++|+|.+++ ...|+++|.+++|++++ +++|...
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G---------~~~vi~~~~~~~k~~~a----~~lGa~~ 208 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALG---------AKSVTAIDISSEKLALA----KSFGAMQ 208 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHH----HHTTCSE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcC---------CcEEEEEechHHHHHHH----HHcCCeE
Confidence 467899999999887644 4566666543 35789999999998765 4578653
No 320
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=93.53 E-value=0.19 Score=53.36 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=38.3
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+||+ |..++|+|..++ ..|++.|.+.+|+..++ .+|..
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~----~lGa~ 214 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG----------AFVVCTARSPRRLEVAK----NCGAD 214 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHH----HhCCC
Confidence 4789999999999765 566777776643 35999999999988764 57765
No 321
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=93.43 E-value=0.092 Score=56.71 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=39.9
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++++|++||-++||+ |..++|+|..++ ...|++.|.+..|+++++ ++|..
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~ 232 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLG---------AAVVIVGDLNPARLAHAK----AQGFE 232 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHH----HTTCE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC---------CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 4789999999999876 667788877653 247999999999998764 57763
No 322
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=93.35 E-value=0.15 Score=54.50 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=39.9
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.+..|+..++ ++|...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~----~lGa~~ 239 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG---------ASRIIGVGTHKDKFPKAI----ELGATE 239 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHH----HcCCcE
Confidence 4688999999998765 666778777653 247999999999988664 577653
No 323
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=93.31 E-value=0.14 Score=54.73 Aligned_cols=51 Identities=8% Similarity=-0.011 Sum_probs=38.8
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||=.+||+ |.-++|+|..++ ..|++.|.+..|+..+ +++|...
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~----~~lGa~~ 236 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG----------AEVIVTSSSREKLDRA----FALGADH 236 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHH----HHHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEecCchhHHHH----HHcCCCE
Confidence 4688999999998766 666777776542 4899999999998875 4577653
No 324
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=93.20 E-value=0.15 Score=54.50 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=38.7
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.+..|+..+ +++|..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~----~~lGa~ 238 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG---------AARIIGVDINKDKFAKA----KEVGAT 238 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHH----HHTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHH----HHhCCc
Confidence 4688999999998765 566777776643 23799999999998866 357764
No 325
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=93.19 E-value=0.23 Score=57.77 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=83.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcC--CCCC-CCCCeEEEEEeCCHHHHHHHHHH-------------HHH-c-----
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQS--TNPG-ALPNGMVIANDLDVQRCNLLIHQ-------------TKR-M----- 134 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~--~~~~-~~p~G~VvAnD~d~~Rl~~L~~n-------------lkR-l----- 134 (730)
++.-+|||+|-|.|--.+.+.+..... .++. ....-+++++|..+-....|.+- +.. .
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 455799999999999888887765310 0000 01136799999965444333321 111 1
Q ss_pred CC-----C----ceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004787 135 CT-----A----NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (730)
Q Consensus 135 g~-----~----nv~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~ 204 (730)
|+ . .+.+..+|+... +.+. ......||.|++|+- .-.|||++|..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~-----------------~~~~~~~da~flD~f-----~p~~np~~w~~--- 191 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLD-----------------DSLNNQVDAWFLDGF-----APAKNPDMWNE--- 191 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCC-----------------GGGTTCEEEEEECSS-----CC--CCTTCSH---
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcc-----------------cccCCceeEEEECCC-----CCCCChhhhhH---
Confidence 10 0 233444555431 1110 001257999999984 22578998753
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEEE
Q 004787 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVEL 260 (730)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~vel 260 (730)
.++....+++++||++..-||. ..|...|.+.|..+.-
T Consensus 192 -----------~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~l~~aGf~~~~ 229 (689)
T 3pvc_A 192 -----------QLFNAMARMTRPGGTFSTFTAA-------GFVRRGLQQAGFNVTK 229 (689)
T ss_dssp -----------HHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHTTCEEEE
T ss_pred -----------HHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhCCeEEEe
Confidence 5677778899999998766666 4778888888755443
No 326
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=93.12 E-value=0.15 Score=54.60 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=38.6
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.+++|+..++ ++|..
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~ 239 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG---------AKRIIAVDLNPDKFEKAK----VFGAT 239 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHH----HTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4688999999998765 556777776643 237999999999988664 57764
No 327
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=93.10 E-value=0.14 Score=55.02 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=38.2
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|++||-.+||+ |..++|+|..++ ..|++.|.+..|+..++ ++|..
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G----------a~Vi~~~~~~~~~~~a~----~lGa~ 240 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG----------AHVVAFTTSEAKREAAK----ALGAD 240 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESSGGGHHHHH----HHTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCc
Confidence 688999999999876 666777776643 36999999999988764 46764
No 328
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=93.09 E-value=0.17 Score=54.04 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=39.5
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||-.+||+ |..++|+|..++ ...|++.|.+..|+..++ ++|...
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~~ 238 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG---------ASRIIGVDINKDKFARAK----EFGATE 238 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH----HcCCce
Confidence 4688999999998765 566777777653 237999999999988764 467643
No 329
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=93.01 E-value=0.16 Score=54.39 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=38.5
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||=.+||+ |..++|+|..++ ...|++.|.+..|+..+ +++|..
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a----~~lGa~ 242 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG---------ASRIIAIDINGEKFPKA----KALGAT 242 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHH----HHTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHH----HHhCCc
Confidence 4688999999998765 556677776643 24799999999998865 357764
No 330
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=92.24 E-value=0.18 Score=53.89 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=61.5
Q ss_pred CCCEEEeec-CC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 78 PDHFVLDMC-AA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 78 pg~~VLDmC-AA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
+|++||=.+ +| -|..++|+|..+. ...|++.|.+.+|+..++ ++|...+ .+... .+.. .+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~---------g~~Vi~~~~~~~~~~~~~----~lGad~v--i~~~~-~~~~-~v- 232 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT---------DLTVIATASRPETQEWVK----SLGAHHV--IDHSK-PLAA-EV- 232 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC---------CSEEEEECSSHHHHHHHH----HTTCSEE--ECTTS-CHHH-HH-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHHH----HcCCCEE--EeCCC-CHHH-HH-
Confidence 899999887 33 3666777777653 358999999999988764 4776533 22211 1100 00
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.......||.|+- |+|.. ..+..++++|++||++|..
T Consensus 233 --------------~~~~~~g~Dvvid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 233 --------------AALGLGAPAFVFS---TTHTD-------------------------KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp --------------HTTCSCCEEEEEE---CSCHH-------------------------HHHHHHHHHSCTTCEEEEC
T ss_pred --------------HHhcCCCceEEEE---CCCch-------------------------hhHHHHHHHhcCCCEEEEE
Confidence 0011247998875 44422 2467788999999999864
No 331
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=92.16 E-value=0.14 Score=54.55 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=37.2
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
...+++|++||=.+||+ |..++|+|..++ ...|++.|.+.+|+++++.
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~ 222 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAG---------ACPLVITDIDEGRLKFAKE 222 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTT---------CCSEEEEESCHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHH
Confidence 34789999999998766 666777777643 2359999999999988765
No 332
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=91.80 E-value=0.35 Score=50.88 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=38.2
Q ss_pred cCCCCCCEEEeecCCcch-HHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAPGS-KTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAPGs-KT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..++||++||=.+||+++ .++++|..++ ...|++.|.++.|+.++ +.+|...
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~---------g~~Vi~~~~~~~r~~~~----~~~Ga~~ 211 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF---------GAKVIAVDINQDKLNLA----KKIGADV 211 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTS---------CCEEEEEESCHHHHHHH----HHTTCSE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhC---------CCEEEEEECcHHHhhhh----hhcCCeE
Confidence 367999999999998754 4555555443 36899999999998754 4577653
No 333
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=91.54 E-value=0.15 Score=48.65 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=30.2
Q ss_pred CCCCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHH
Q 004787 77 QPDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCN 125 (730)
Q Consensus 77 ~pg~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~ 125 (730)
.++.+||++++|+| ..+..|++.. .-.|+|+|+++..+.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~----------g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS----------KVDLVLTDIKPSHGG 73 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS----------CCEEEEECSSCSSTT
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC----------CCeEEEEECCccccc
Confidence 45789999999999 5777776631 235999999887765
No 334
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=91.48 E-value=0.35 Score=52.00 Aligned_cols=52 Identities=15% Similarity=0.016 Sum_probs=38.0
Q ss_pred cC-CCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LD-VQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld-~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++ +++|++||-.+||+ |..++|+|..++ ...|++.|.+.+|++.++ ++|...
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~~ 243 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLG---------AENVIVIAGSPNRLKLAE----EIGADL 243 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTT---------BSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcC---------CceEEEEcCCHHHHHHHH----HcCCcE
Confidence 36 88999999999654 455666666542 148999999999988764 577653
No 335
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=91.45 E-value=0.16 Score=54.19 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=38.7
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
+++++|++||-.+||+ |..++|+|..++ ..|++.|.+..|+..++ ++|...
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G----------a~Vi~~~~~~~~~~~~~----~lGa~~ 226 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG----------AETYVISRSSRKREDAM----KMGADH 226 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSSTTHHHHH----HHTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHHH----HcCCCE
Confidence 4688999999999865 566777777653 36999999999887664 467543
No 336
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=91.07 E-value=0.24 Score=52.25 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++ +|++||-.+||+ |..++|+|..+. |...|++.|.+.+|+..++ ++|...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~--------~Ga~Vi~~~~~~~~~~~~~----~lGa~~ 219 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALM--------KNITIVGISRSKKHRDFAL----ELGADY 219 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHC--------TTCEEEEECSCHHHHHHHH----HHTCSE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhc--------CCCEEEEEeCCHHHHHHHH----HhCCCE
Confidence 77 999999999875 667788877751 0146999999999988764 467643
No 337
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=90.94 E-value=0.67 Score=50.15 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=37.9
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|++||=.+||+ |..++|+|..++ ...|++.|.+..|+.+++ ++|..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~~~----~lGa~ 260 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG---------ASKVILSEPSEVRRNLAK----ELGAD 260 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCHHHHHHHH----HHTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HcCCC
Confidence 688999999998765 556667766543 248999999999998764 56754
No 338
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=90.90 E-value=0.23 Score=51.74 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=37.9
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+||+ |..++|+|..++ ..|++.+ +.+|+..++ ++|...
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G----------a~Vi~~~-~~~~~~~~~----~lGa~~ 188 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNAG----------YVVDLVS-ASLSQALAA----KRGVRH 188 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEC-SSCCHHHHH----HHTEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEE-ChhhHHHHH----HcCCCE
Confidence 4678999999999864 666777777653 3899999 888887764 477643
No 339
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=90.46 E-value=0.26 Score=55.43 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=56.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
..-+|||+|||.||.+.-+-.+ + --.|+|+|+|+..+...++|.. ..+...+.+.|...+........
T Consensus 87 ~~~~viDLFaG~GGlslG~~~a-G---------~~~v~avE~d~~A~~ty~~N~~--~~p~~~~~~~DI~~i~~~~~~~~ 154 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESI-G---------GQCVFTSEWNKHAVRTYKANHY--CDPATHHFNEDIRDITLSHQEGV 154 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTT-T---------EEEEEEECCCHHHHHHHHHHSC--CCTTTCEEESCTHHHHCTTCTTS
T ss_pred ccceEEEecCCccHHHHHHHHC-C---------CEEEEEEeCCHHHHHHHHHhcc--cCCCcceeccchhhhhhcccccc
Confidence 3568999999999988776432 1 2358999999999998887641 11333455566655321000000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
.. .............+|.|+.-+||-+--..
T Consensus 155 ~~----~~~~~~i~~~~~~~Dvl~gGpPCQ~FS~A 185 (482)
T 3me5_A 155 SD----EAAAEHIRQHIPEHDVLLAGFPCQPFSLA 185 (482)
T ss_dssp CH----HHHHHHHHHHSCCCSEEEEECCCCCC---
T ss_pred ch----hhHHhhhhhcCCCCCEEEecCCCcchhhh
Confidence 00 00000000112468999999999886544
No 340
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=89.19 E-value=1.1 Score=51.77 Aligned_cols=140 Identities=15% Similarity=0.110 Sum_probs=81.8
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcC--CCCC-CCCCeEEEEEeC---CHHHHH-HHH----------HHHHHcCC--C
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQS--TNPG-ALPNGMVIANDL---DVQRCN-LLI----------HQTKRMCT--A 137 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~--~~~~-~~p~G~VvAnD~---d~~Rl~-~L~----------~nlkRlg~--~ 137 (730)
++.-+|||+|=|.|--.+...+..... .++. ....-+++++|. +..-+. .+. +.+..... +
T Consensus 65 ~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 65 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 345699999999999887777665210 0000 011357899999 555444 111 11111111 1
Q ss_pred c------------eEEEeccccc-CCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004787 138 N------------LIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (730)
Q Consensus 138 n------------v~vt~~Da~~-fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~ 204 (730)
. +.+..+|+.. ++.+. ......||.|++|+- .-.+||++|..
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~-----------------~~~~~~~d~~~~D~f-----~p~~np~~w~~--- 199 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLD-----------------DSLNQKVDAWFLDGF-----APAKNPDMWTQ--- 199 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBC-----------------GGGTTCEEEEEECCS-----CGGGCGGGSCH---
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcc-----------------cccCCcccEEEECCC-----CCcCChhhhhH---
Confidence 1 2233344433 11110 001256999999983 23689998863
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCCcEE
Q 004787 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVE 259 (730)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~~ve 259 (730)
.++....+++++||++...||. ..|...|.+.|..++
T Consensus 200 -----------~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~L~~aGf~v~ 236 (676)
T 3ps9_A 200 -----------NLFNAMARLARPGGTLATFTSA-------GFVRRGLQDAGFTMQ 236 (676)
T ss_dssp -----------HHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHHTCEEE
T ss_pred -----------HHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhCCeEEE
Confidence 5777888899999988755554 577888888775444
No 341
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=88.82 E-value=0.5 Score=49.75 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=38.9
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++++|++||-.+|| -|.-++|+|..++ ..|++.|.+..|+..++. +|..
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~----lga~ 191 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILN----------FRLIAVTRNNKHTEELLR----LGAA 191 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESSSTTHHHHHH----HTCS
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHh----CCCc
Confidence 578999999999886 4667777777653 489999999999887653 6654
No 342
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=87.92 E-value=0.42 Score=50.55 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=32.6
Q ss_pred CCCEEEeec-CC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 78 PDHFVLDMC-AA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 78 pg~~VLDmC-AA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+|++||=.+ +| -|.-++|+|..+ ...|++.|.+..|+..++. +|..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~----------Ga~Vi~~~~~~~~~~~~~~----lGa~ 197 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY----------GLRVITTASRNETIEWTKK----MGAD 197 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT----------TCEEEEECCSHHHHHHHHH----HTCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHh----cCCc
Confidence 899999773 33 355566666653 2489999999999887654 6755
No 343
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=87.91 E-value=1.1 Score=47.26 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=36.8
Q ss_pred CCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.+++|++||-.+||+ |.-++|+|..+ ...|++.|.+..|+..++ ++|..
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~lGa~ 210 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM----------GLNVVAVDIGDEKLELAK----ELGAD 210 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT----------TCEEEEECSCHHHHHHHH----HTTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----HCCCC
Confidence 688999999999854 55566666553 248999999999988664 46764
No 344
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=87.33 E-value=1 Score=47.47 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=37.2
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+| +-|.-+++++..+ ...|++.|.+..|+..++ .+|..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~----------G~~Vi~~~~~~~~~~~~~----~~ga~ 213 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF----------GARVIATAGSEDKLRRAK----ALGAD 213 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH----hcCCC
Confidence 36789999999998 4455666666653 248999999999988764 35654
No 345
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=87.06 E-value=0.66 Score=49.31 Aligned_cols=51 Identities=6% Similarity=0.015 Sum_probs=36.3
Q ss_pred CCC-CCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 75 DVQ-PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 75 d~~-pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++ +|++||=.+||+ |..++|+|..++ ..|++.|.+..|+..+. +++|...
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G----------a~Vi~~~~~~~~~~~~~---~~lGa~~ 228 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMG----------HHVTVISSSNKKREEAL---QDLGADD 228 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSTTHHHHHH---TTSCCSC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CeEEEEeCChHHHHHHH---HHcCCce
Confidence 677 999999998654 445666666543 47999999998887654 2567654
No 346
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=87.02 E-value=1 Score=43.17 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=31.0
Q ss_pred cCCCCCCEEEeecCCc--chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAAP--GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP--GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
+++++|++||..+|+. |.-+++++... ...|++.|.+..+...++
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~----------G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMI----------GARIYTTAGSDAKREMLS 80 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHH
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH
Confidence 4678999999988532 33444444432 257999999998876553
No 347
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=86.70 E-value=0.91 Score=47.90 Aligned_cols=50 Identities=18% Similarity=0.079 Sum_probs=36.0
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++ +|++||-.+||+ |..++|+|..++ ...|++.|.+..|+..++ ++|..
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~G---------a~~Vi~~~~~~~~~~~~~----~~Ga~ 214 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASG---------AYPVIVSEPSDFRRELAK----KVGAD 214 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTT---------CCSEEEECSCHHHHHHHH----HHTCS
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH----HhCCC
Confidence 467 899999999854 555666666542 237999999999988664 46654
No 348
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=86.61 E-value=1.6 Score=46.13 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred cCCCCCCEEEeecC-C-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.++ | -|.-++|+|..+ ...|++.|.+..|+..++ ++|..
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~lGa~ 214 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAF----------GAEVYATAGSTGKCEACE----RLGAK 214 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----hcCCC
Confidence 46789999997743 2 344555665543 247999999999988765 46654
No 349
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=86.55 E-value=1 Score=47.23 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=35.1
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||-.+|+ -|.-++|++..+ ...|++.|.+..|+..+ +++|..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~----~~~ga~ 195 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK----------GAHTIAVASTDEKLKIA----KEYGAE 195 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHH----HHTTCS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHH----HHcCCc
Confidence 367899999998853 344455555543 24899999999998865 346754
No 350
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=86.34 E-value=1.1 Score=46.63 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=36.2
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+| +-|.-++|++..++ ..|++.+.+..|+..++ .+|..
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~----~~Ga~ 187 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALG----------AKLIGTVSSPEKAAHAK----ALGAW 187 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCC
Confidence 46889999998874 23555666666542 48999999999988764 46654
No 351
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=86.03 E-value=0.68 Score=49.13 Aligned_cols=51 Identities=6% Similarity=-0.077 Sum_probs=34.2
Q ss_pred cCCCCC------CEEEeecCCc-chHH-HHHH-HHHhcCCCCCCCCCeEEEEEeCCHH---HHHHHHHHHHHcCCC
Q 004787 74 LDVQPD------HFVLDMCAAP-GSKT-FQLL-EIIHQSTNPGALPNGMVIANDLDVQ---RCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg------~~VLDmCAAP-GsKT-~qLa-e~L~~~~~~~~~p~G~VvAnD~d~~---Rl~~L~~nlkRlg~~ 137 (730)
+.+++| ++||-.+||+ |..+ +|+| ..++ ...|++.|.+.. |+..++ ++|..
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G---------a~~Vi~~~~~~~~~~~~~~~~----~lGa~ 224 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG---------YENLYCLGRRDRPDPTIDIIE----ELDAT 224 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC---------CCEEEEEECCCSSCHHHHHHH----HTTCE
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC---------CcEEEEEeCCcccHHHHHHHH----HcCCc
Confidence 357889 9999999843 3344 4554 3321 234999999988 887653 57764
No 352
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=85.90 E-value=0.99 Score=47.60 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=36.2
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+| +-|.-++|+|..++ ..|++.+.+..|+..++ ++|..
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~----~~ga~ 206 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGMG----------AKVIAVVNRTAATEFVK----SVGAD 206 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESSGGGHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHH----hcCCc
Confidence 46789999998886 23555666666532 48999999999887665 36654
No 353
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=85.82 E-value=1.5 Score=53.41 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=56.4
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
.-+|||+|||-||.+.-+-.+ +- .-.|.|+|+++..++...+|. ++..+.+.|...+.......+.
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~--------~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di 605 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GI--------SDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGET 605 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TS--------EEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCS
T ss_pred CCeEEEeccCccHHHHHHHHC-CC--------CceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhh
Confidence 458999999999998877543 10 125889999999999887763 3445555554332100000000
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccc
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlr 193 (730)
.. ...........+|.|+.-+||-+--...
T Consensus 606 ~~-----~~~~~lp~~~~vDll~GGpPCQ~FS~ag 635 (1002)
T 3swr_A 606 TN-----SRGQRLPQKGDVEMLCGGPPCQGFSGMN 635 (1002)
T ss_dssp BC-----TTCCBCCCTTTCSEEEECCCCTTCCSSS
T ss_pred hh-----hhhhhcccCCCeeEEEEcCCCcchhhhC
Confidence 00 0000001124699999999998865443
No 354
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=85.47 E-value=0.85 Score=48.34 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=36.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH---HHHHHHHHHHHHcC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV---QRCNLLIHQTKRMC 135 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~---~Rl~~L~~nlkRlg 135 (730)
-.+|+.|||-+||+|+.... |..++ -..+++|+++ .-+..++.++++.+
T Consensus 240 ~~~~~~vlDpF~GsGtt~~a-a~~~~----------r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARV-AIQEG----------RNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHH-HHHHT----------CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHH-HHHcC----------CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 47899999999999985444 44442 4789999999 88888888776654
No 355
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=85.22 E-value=0.72 Score=49.92 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCEEEeecCCcchHHHHHHHH----HhcCC-CCC--CCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEecccccCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEI----IHQST-NPG--ALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFP 150 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~----L~~~~-~~~--~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~fp 150 (730)
..+|+|++|+.|.-|+.++.. +.... ..+ ..|.-.|+.||+-..-...|-..+..+.. .+-.++.+.+..|=
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 468999999999988875443 22100 001 24678999999977777766554432110 01122223322221
Q ss_pred CcccCCCCCCCCccccccccccccccccEEEe--------cCCCCCCCccccCh-hhhhhc-cccccc-----chHHHHH
Q 004787 151 GCRANKNFSSASDKGIESESNMGQLLFDRVLC--------DVPCSGDGTLRKAP-DIWRKW-NVGLGN-----GLHSLQV 215 (730)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~--------DvPCSGdGtlrk~p-d~~~~w-~~~~~~-----~L~~lQ~ 215 (730)
. .-+....||.|.. ++|+.-.. |. .+|-.. ++..+. ....--.
T Consensus 132 ~------------------rlfp~~S~d~v~Ss~aLHWls~~p~~l~~----nkg~i~~~~~~p~~v~~ay~~Qf~~D~~ 189 (359)
T 1m6e_X 132 G------------------RLFPRNTLHFIHSSYSLMWLSQVPIGIES----NKGNIYMANTCPQSVLNAYYKQFQEDHA 189 (359)
T ss_dssp S------------------CCSCTTCBSCEEEESCTTBCSSCCSCCCC----CTTTTSSCSSSCCTTSCCSHHHHHHHHH
T ss_pred h------------------ccCCCCceEEEEehhhhhhcccCchhhhc----cCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence 0 1122367888754 44433111 00 011111 111121 1122224
Q ss_pred HHHHHHHhhccCCCEEEEEcCCC
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
.+|+.-.+-|+|||+||.++..-
T Consensus 190 ~FL~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 190 LFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp HHHHHHHHHBCTTCEEEEEEEEC
T ss_pred HHHHHHHHHhcCCceEEEEEecC
Confidence 45777788999999999987654
No 356
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=84.76 E-value=0.43 Score=49.68 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=33.9
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
.+||.|++|||.-........++.+.. .............++..+.++||+||.|+....
T Consensus 39 ~s~DlIvtdPPY~~~~~y~~~~~~~~~--~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 39 ASVHLVVTSPPYWTLKRYEDTPGQLGH--IEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp TCEEEEEECCCCCCCC-------CCHH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceeEEEECCCCCCccccCCChhhhcc--cccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 679999999998543322221111100 000011122345688999999999999987644
No 357
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=84.54 E-value=2 Score=50.73 Aligned_cols=49 Identities=20% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
...+|||++||.||.+.-+-++.+... ..=-.|.|+|+|+..+.+.+.|
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~----~~f~vv~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSG----LKLETRWAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHT----EEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccC----CceeEEEEEeCCHHHHHHHHHH
Confidence 346899999999999988865532100 0002689999999999998876
No 358
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=84.51 E-value=1.6 Score=45.52 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=35.7
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||-.+|+ -|.-++|++..+ ...|++.|.+..|+..+. +.+|..
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~---~~~g~~ 197 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLK----------GCRVVGIAGGAEKCRFLV---EELGFD 197 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHH---HTTCCS
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH---HHcCCC
Confidence 468999999988873 345555555543 248999999999988663 345653
No 359
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=84.25 E-value=1.4 Score=46.13 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=35.3
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+| +-|.-+++++..+ ...|++.|.+..|+..+++ ++|..
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~----------G~~V~~~~~~~~~~~~~~~---~~g~~ 203 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMM----------GCYVVGSAGSKEKVDLLKT---KFGFD 203 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHHHH---TSCCS
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHH---HcCCc
Confidence 46789999999987 2344455555442 2489999999998876642 35654
No 360
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=84.10 E-value=2.2 Score=44.51 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=33.8
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+|+ -|.-+++++... ...|++.|.+..++..+ +++|..
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~----------G~~V~~~~~~~~~~~~~----~~~g~~ 192 (333)
T 1v3u_A 141 CGVKGGETVLVSAAAGAVGSVVGQIAKLK----------GCKVVGAAGSDEKIAYL----KQIGFD 192 (333)
T ss_dssp SCCCSSCEEEEESTTBHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHH----HHTTCS
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHH----HhcCCc
Confidence 368899999999873 333344444432 24899999999888766 345653
No 361
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=83.96 E-value=1.5 Score=46.26 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=36.7
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||-.+|| -|.-++|++..+. ...|++.|.+..|+..++ .+|..
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~---------Ga~Vi~~~~~~~~~~~~~----~~g~~ 218 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS---------GATIIGVDVREEAVEAAK----RAGAD 218 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHT---------CCEEEEEESSHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHH----HhCCC
Confidence 368899999999987 4445666666541 147999999999987763 35654
No 362
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=83.82 E-value=2.1 Score=45.44 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=36.6
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+| +-|.-++|+|..++ ..|++.+.+..|+..++ ++|..
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G----------a~Vi~~~~~~~~~~~~~----~~Ga~ 210 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAK----------CHVIGTCSSDEKSAFLK----SLGCD 210 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTT----------CEEEEEESSHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHHH----HcCCc
Confidence 36899999999984 34556666666532 47999999999987664 46754
No 363
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=83.78 E-value=1.3 Score=46.09 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=36.1
Q ss_pred cCCCCCC-EEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDH-FVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~-~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|+ +||=.+| +-|..++|+|..++ ..|++.+.+.+|+..++ .+|...
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G----------a~vi~~~~~~~~~~~~~----~lGa~~ 197 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRG----------YTVEASTGKAAEHDYLR----VLGAKE 197 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCTTCHHHHH----HTTCSE
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCC----------CEEEEEECCHHHHHHHH----HcCCcE
Confidence 3578886 8998887 34555677766542 46999999988887664 477653
No 364
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=83.34 E-value=0.77 Score=48.52 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC
Q 004787 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT 136 (730)
Q Consensus 76 ~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~ 136 (730)
..+|+.|||-+||+|+. ++.|..++ -..+++|+++..+.+++.++++.+.
T Consensus 250 ~~~~~~VlDpF~GsGtt-~~aa~~~g----------r~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTT-GLVAERES----------RKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp CCTTCEEEETTCTTCHH-HHHHHHTT----------CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred CCCCCEEEECCCCCCHH-HHHHHHcC----------CCEEEEeCCHHHHHHHHHHHHhccc
Confidence 47899999999999984 44444442 5799999999999988887765543
No 365
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=82.26 E-value=1 Score=47.47 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=33.8
Q ss_pred ccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128 (730)
Q Consensus 73 lLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~ 128 (730)
.+++ +|++||-.+||+ |..++|+|..++ .+.|++.|.+..|+..++
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G---------a~~Vi~~~~~~~~~~~~~ 206 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASG---------AGPILVSDPNPYRLAFAR 206 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTT---------CCSEEEECSCHHHHGGGT
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHH
Confidence 4467 999999999854 555666666542 237999999999887664
No 366
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=82.23 E-value=4 Score=41.14 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=77.5
Q ss_pred CCCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.|..+|=-+|+.+ |.-..+|..|... ...|+.+|.+...+..+...++.++...+.+...|......+. .
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~-------Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~--~ 75 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL-------GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVI--N 75 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHH--H
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHH--H
Confidence 3677887787653 5666777776652 4689999999999888888888877666666666655421110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccC-hhh-hhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PDI-WRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~-pd~-~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
............|.++.++-..+...+... .+. +..|......++. ....+...++.+++.||+||..
T Consensus 76 ---------~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~-~~~~~~~~~~~~~~~~G~IVni 145 (256)
T 4fs3_A 76 ---------GFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSY-SLTIVAHEAKKLMPEGGSIVAT 145 (256)
T ss_dssp ---------HHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTH-HHHHHHHHHHTTCTTCEEEEEE
T ss_pred ---------HHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCEEEEE
Confidence 000011223578888876643332222111 111 2223211111111 1233455667788889999864
No 367
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=82.12 E-value=1.6 Score=46.42 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=34.5
Q ss_pred CCC-CCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQ-PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~-pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++ +|++||=.+||+ |..++|+|..+ ...|++.+.+..|+..+. +++|..
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~----------Ga~Vi~~~~~~~~~~~~~---~~lGa~ 234 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAF----------GSKVTVISTSPSKKEEAL---KNFGAD 234 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT----------TCEEEEEESCGGGHHHHH---HTSCCS
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH---HhcCCc
Confidence 567 999999998644 44455555543 247999999998887654 256654
No 368
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=81.91 E-value=2.4 Score=45.02 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=34.0
Q ss_pred ccCCC--C-------CCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH---HHHHHHHHHHHHcCCC
Q 004787 73 FLDVQ--P-------DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDV---QRCNLLIHQTKRMCTA 137 (730)
Q Consensus 73 lLd~~--p-------g~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~---~Rl~~L~~nlkRlg~~ 137 (730)
.++++ + |++||-.+||+ |.-++|+|..+ ...|++.|.+. .|+..++ .+|..
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~----------Ga~Vi~~~~~~~~~~~~~~~~----~~ga~ 229 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTY----------GLEVWMANRREPTEVEQTVIE----ETKTN 229 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHH----------TCEEEEEESSCCCHHHHHHHH----HHTCE
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhC----------CCEEEEEeCCccchHHHHHHH----HhCCc
Confidence 34677 8 99999999832 33345555443 24899999998 8876553 46653
No 369
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=81.69 E-value=2.1 Score=47.12 Aligned_cols=51 Identities=18% Similarity=0.001 Sum_probs=37.0
Q ss_pred cCCCCCCEEEeecC-C-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||=.+| | -|..++|+|..++ ..|++.+.+..|++.++ ++|...
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~G----------a~vi~~~~~~~~~~~~~----~lGa~~ 276 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGG----------ANPICVVSSPQKAEICR----AMGAEA 276 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHH----HHTCCE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcC----------CeEEEEECCHHHHHHHH----hhCCcE
Confidence 47899999998876 3 3556666666542 47889999999988764 477643
No 370
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=81.50 E-value=5.1 Score=41.18 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=77.8
Q ss_pred EccccccchhhccCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 004787 62 RQEAVSMVPPLFLDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLI 140 (730)
Q Consensus 62 ~Qd~~Smlp~llLd~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~ 140 (730)
.|-+.||-+...| .|.+||=.+|+. ++....+++.|... ...|+.+|.+......+.......+. +.
T Consensus 16 ~~gp~sm~~~~~l---~~k~vlVTGasg~~GIG~~ia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~--~~ 83 (296)
T 3k31_A 16 TQGPGSMRTGMLM---EGKKGVIIGVANDKSLAWGIAKAVCAQ-------GAEVALTYLSETFKKRVDPLAESLGV--KL 83 (296)
T ss_dssp -----CCCCCCTT---TTCEEEEECCCSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHHHTC--CE
T ss_pred ccCCccccchhcc---CCCEEEEEeCCCCCCHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHHHhcCC--eE
Confidence 3556777665444 367888888764 46677777777652 35799999998776666666665553 35
Q ss_pred EEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHH
Q 004787 141 VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQV 215 (730)
Q Consensus 141 vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~ 215 (730)
+...|......+. . ...........+|.++..+-.... +.+ ....+.|.. .-..++ .-..
T Consensus 84 ~~~~Dv~d~~~v~--~---------~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~---~~~vN~-~g~~ 148 (296)
T 3k31_A 84 TVPCDVSDAESVD--N---------MFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLT---SMHISC-YSFT 148 (296)
T ss_dssp EEECCTTCHHHHH--H---------HHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHH---HHHHHT-HHHH
T ss_pred EEEcCCCCHHHHH--H---------HHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHH---HHHHHH-HHHH
Confidence 5556655421110 0 000001112468999885533221 111 122222322 111111 1234
Q ss_pred HHHHHHHhhccCCCEEEEEc
Q 004787 216 QIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYST 235 (730)
.+++.++..++.+|+||+.+
T Consensus 149 ~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 149 YIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHHHHhhcCCEEEEEE
Confidence 56777888888899999864
No 371
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=81.40 E-value=2.4 Score=44.05 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=32.5
Q ss_pred ccCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 73 FLDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 73 lLd~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
..++++|++||-.+|+ -|.-+++++... ...|++.|.+..++..+++
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------G~~V~~~~~~~~~~~~~~~ 183 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL----------GAKLIGTVGTAQKAQSALK 183 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHHH
Confidence 3468899999998853 233344444443 2489999999999877653
No 372
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=81.39 E-value=1.6 Score=45.22 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=33.8
Q ss_pred CCCCCC-EEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 75 DVQPDH-FVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 75 d~~pg~-~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++++++ .||=.+| +-|.-++|+|..++ ..|++.+.+.+|++.++ ++|...
T Consensus 142 ~~~~~~g~VlV~Ga~G~vG~~aiqla~~~G----------a~Vi~~~~~~~~~~~~~----~lGa~~ 194 (324)
T 3nx4_A 142 GIRPQDGEVVVTGASGGVGSTAVALLHKLG----------YQVAAVSGRESTHGYLK----SLGANR 194 (324)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCGGGHHHHH----HHTCSE
T ss_pred ccCCCCCeEEEECCCcHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHH----hcCCCE
Confidence 455532 3887765 34666777776643 37999999999988774 477654
No 373
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=81.37 E-value=5.8 Score=39.61 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=73.8
Q ss_pred CCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|.+||=.+|+.| |.-..++..|... ...|+.++.+......+.+.....+..++.+...|......+. .
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~--~- 76 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEA-------GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIE--T- 76 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHH--H-
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHC-------CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHH--H-
Confidence 567777776632 3667777777652 3578999998777777766666666546777777766532111 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...........+|.++..+--... +.+ ...++.|..- -..+ ..-...+++.++.+++.+|+||
T Consensus 77 --------~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~---~~~n-~~~~~~l~~~~~~~~~~~g~iv 144 (266)
T 3oig_A 77 --------CFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLA---HNIS-SYSLTAVVKAARPMMTEGGSIV 144 (266)
T ss_dssp --------HHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHH---HHHH-THHHHHHHHHHGGGCTTCEEEE
T ss_pred --------HHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHH---HHHh-HHHHHHHHHHHHhhcCCCceEE
Confidence 000001112468988886543331 111 1122222210 0001 1123456777888888899999
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
+.+
T Consensus 145 ~is 147 (266)
T 3oig_A 145 TLT 147 (266)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 374
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=81.01 E-value=2.5 Score=44.71 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+|+ -|.-+++++... ...|++.|.+.+|+..++ .+|..
T Consensus 158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~~g~~ 209 (354)
T 2j8z_A 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMA----------GAIPLVTAGSQKKLQMAE----KLGAA 209 (354)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT----------TCEEEEEESCHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHHH----HcCCc
Confidence 468899999988743 233344444432 248999999999988763 45654
No 375
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=80.85 E-value=1.4 Score=46.41 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 75 DVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 75 d~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
++++|++||-.+|+ -|.-+++++..+ ...|++.|.+..|+..++ .+|..
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------Ga~V~~~~~~~~~~~~~~----~~g~~ 216 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM----------GYRVLGIDGGEGKEELFR----SIGGE 216 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT----------TCEEEEEECSTTHHHHHH----HTTCC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC----------CCcEEEEcCCHHHHHHHH----HcCCc
Confidence 67899999999983 344555555542 248999999988886553 45653
No 376
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=80.78 E-value=1.4 Score=46.60 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=35.9
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 237 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCS 237 (730)
.+||.|++|||......- .|..............+|..+.++|++||.|+.....
T Consensus 32 ~svDlI~tDPPY~~~~~~--------~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 32 ESISLVMTSPPFALQRKK--------EYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SCEEEEEECCCCSSSCSC--------SSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCeeEEEECCCCCCCccc--------ccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 679999999998543210 1111111223344567888899999999999876543
No 377
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=80.02 E-value=3.8 Score=42.74 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.9
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
.++++|++||-.+| |-|.-+++++... ...|++.|.+..|+..+++
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~----------G~~Vi~~~~~~~~~~~~~~ 188 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHL----------GATVIGTVSTEEKAETARK 188 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHT----------TCEEEEEESSHHHHHHHHH
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHHH
Confidence 46789999998875 3344455555542 2489999999988887643
No 378
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=79.83 E-value=3 Score=52.26 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=55.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
...+|||+|||.||.+.-+-.+ +- .-.|.|+|++...+.+.++|. ++..+.+.|...+....+..+
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A-G~--------~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gd 915 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA-GI--------SETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGE 915 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT-TS--------EEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTC
T ss_pred CCceEEecccCccHHHHHHHHC-CC--------CceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccc
Confidence 3468999999999998876432 10 125889999999999888763 334455555432210000000
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 192 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtl 192 (730)
.... .. ........+|.|+.-+||-+--..
T Consensus 916 i~~~----~~-~~lp~~~~vDvl~GGpPCQ~FS~a 945 (1330)
T 3av4_A 916 VTNS----LG-QRLPQKGDVEMLCGGPPCQGFSGM 945 (1330)
T ss_dssp SBCS----SC-CBCCCTTTCSEEEECCCCTTTCSS
T ss_pred hhhh----hh-hhccccCccceEEecCCCcccccc
Confidence 0000 00 000112468999999999886543
No 379
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=78.47 E-value=2.1 Score=44.55 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCCCC-EEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 75 DVQPDH-FVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 75 d~~pg~-~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++++|+ +||=.+| +-|..++|+|..++ ..|++.+.+.+|+..++ ++|...
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G----------a~vi~~~~~~~~~~~~~----~lGa~~ 198 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG----------YDVVASTGNREAADYLK----QLGASE 198 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHT----------CCEEEEESSSSTHHHHH----HHTCSE
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCcE
Confidence 578886 8998887 34555677776643 36999999988887664 467653
No 380
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=78.35 E-value=1.3 Score=45.52 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=35.0
Q ss_pred CCCCCEEEeecC-C-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 76 VQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 76 ~~pg~~VLDmCA-A-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++|++||-.+| | -|.-++|+|..+ ...|++.|.+..|+..++ ++|..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~~----~~ga~ 172 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM----------GLRVLAAASRPEKLALPL----ALGAE 172 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT----------TCEEEEEESSGGGSHHHH----HTTCS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC----------CCEEEEEeCCHHHHHHHH----hcCCC
Confidence 789999999987 2 355566666553 248999999999887663 46754
No 381
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=77.97 E-value=7.1 Score=37.64 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=84.5
Q ss_pred hhHHHHHhhhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhccCCCCccEEEEceEee--EEEecCCCCCCcc
Q 004787 503 TIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKM--FERQTSREGNSAP 580 (730)
Q Consensus 503 ~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~~~k~iy~~s~~vk~il~~n~~~g~~lkii~~GvK~--F~rq~~~~~~~~~ 580 (730)
.+++.+..| + . +..+...+.|.. ..+|||++..+.+.++.. +.++++.|+-+ |...+++.
T Consensus 17 ~i~~~L~~y-~-~--~~~~~~~~~~~~----~~~Vy~v~~~~~~~~~~~-----~~~l~s~G~~~Gk~~~~~t~~----- 78 (166)
T 2p38_A 17 LILKEAEKY-G-E--LLHEFFCVVEGK----YRDVYAVNEEVWKIIEDI-----NMRPYSLGTFVGTIRVDENLV----- 78 (166)
T ss_dssp HHHHHHHTT-E-E--ECCCCEEEEESS----SEEEEEECHHHHHHTTTC-----CCCGGGTEEEEEEEEECTTSC-----
T ss_pred HHHHHHHHh-c-C--CCcccEEEEEcc----CcEEEEECcHHHHHhhcc-----CccceEEEEEEEEEEecccCC-----
Confidence 445566655 3 2 223434445553 489999999998875332 46778888543 32222332
Q ss_pred cceeeccChhhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEcCCCCCCCccccCCeE
Q 004787 581 CSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSGEALSNPIQIDASTI 660 (730)
Q Consensus 581 c~~Ri~~eGl~~l~p~i~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~~~~~~~~~~~~~~~~ 660 (730)
=.||++-+|+.+| ++ .+..|.++..-.+.+|-..++.-+.+.+- . ...|.-|++++.+. ..+
T Consensus 79 ~kf~pti~~l~~l-~~-~k~kV~V~~~ae~~flyG~dV~k~gI~~~------~-~~~~~~VvV~~~~~---------~pL 140 (166)
T 2p38_A 79 EKFYPNLEFFSLI-KL-EKNYVILGPKASFLFTTGKDAPKEAVREI------K-WQGSKRVVVLNDLG---------DII 140 (166)
T ss_dssp EEEEECHHHHTTE-EE-CSSEEEECHHHHHHHHTTCCBCGGGEEEE------E-CSSCSEEEEECTTS---------CEE
T ss_pred CeEEEehHHhhhc-cc-cccEEEECCcceEeeecCCCcchhcceEE------e-ecCCCEEEEEECCC---------cEE
Confidence 2799999999999 76 56677788887888887766654444321 1 45677787776421 236
Q ss_pred EEEEe----eccCeeee
Q 004787 661 AIGCW----KGRASLSV 673 (730)
Q Consensus 661 ~~~~W----~g~~s~~l 673 (730)
.+..+ +|+.-.|+
T Consensus 141 G~G~a~~s~~gkvv~n~ 157 (166)
T 2p38_A 141 GIGLINPKSDRRFIKNL 157 (166)
T ss_dssp EEEEECTTCSTTSEEEE
T ss_pred EEEEEEECCCCEEEEEc
Confidence 77777 66654443
No 382
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=77.92 E-value=2.1 Score=46.91 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=34.1
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeE----EEEEeCCHHHHHHHHHHHH
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGM----VIANDLDVQRCNLLIHQTK 132 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~----VvAnD~d~~Rl~~L~~nlk 132 (730)
-+|||+|||-||.+.-+-++ +. +-.. |.|+|+|+..+....+|..
T Consensus 11 lrvldLFsGiGG~~~Gl~~a-G~-------~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNI-AR-------SKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHH-HH-------HHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ceEEEEecCcCHHHHHHHHh-CC-------ccccceeeEEEEecCHHHHHHHHHHcC
Confidence 48999999999988877543 21 0013 8999999999998887763
No 383
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=77.89 E-value=7.5 Score=42.34 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=36.1
Q ss_pred cCCCCCCEEEeecC-C-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCA-A-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCA-A-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||=.+| | -|.-++|+|..+ ...|++.+.+..|+..+ +++|...
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~----------Ga~vi~~~~~~~~~~~~----~~lGa~~ 268 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG----------GGIPVAVVSSAQKEAAV----RALGCDL 268 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHH----HHTTCCC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc----------CCEEEEEeCCHHHHHHH----HhcCCCE
Confidence 56899999998876 2 244555665543 24789999999998876 3577654
No 384
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=75.95 E-value=10 Score=37.42 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhc-CCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQ-STNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~-~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+|| +.-|.|+...+++..|.. . ...|++++.+..++..+...+...+ .++.+...|......+. .
T Consensus 4 ~k~vl-ITGasggIG~~~a~~L~~~~-------g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~--~- 71 (276)
T 1wma_A 4 IHVAL-VTGGNKGIGLAIVRDLCRLF-------SGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIR--A- 71 (276)
T ss_dssp CCEEE-ESSCSSHHHHHHHHHHHHHS-------SSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHH--H-
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHhc-------CCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHH--H-
Confidence 45666 455678888888888764 3 3589999999988887777776654 34555666654421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccccC-hhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA-PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~-pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
...........+|.|+..+-....+..... ++.|... -..++ .-...+++.++..++.+|+|||.+.
T Consensus 72 --------~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 72 --------LRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVT---MKTNF-FGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp --------HHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHH---HHHHT-HHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred --------HHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhh---hheee-eeHHHHHHHHHHhhCCCCEEEEECC
Confidence 000000112368999875533222211111 1222111 01111 1234567777888877899998743
No 385
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=75.69 E-value=4.4 Score=42.88 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=34.5
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++|++||-.+|+ -|.-+++++..+ ...|++.+.+..|+..+ +.+|..
T Consensus 166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~----------Ga~Vi~~~~~~~~~~~~----~~~ga~ 217 (351)
T 1yb5_A 166 ACVKAGESVLVHGASGGVGLAACQIARAY----------GLKILGTAGTEEGQKIV----LQNGAH 217 (351)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHT----------TCEEEEEESSHHHHHHH----HHTTCS
T ss_pred hCCCCcCEEEEECCCChHHHHHHHHHHHC----------CCEEEEEeCChhHHHHH----HHcCCC
Confidence 468899999999873 234445554442 24799999999998754 346654
No 386
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=74.51 E-value=2.2 Score=43.41 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=35.7
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 238 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl 238 (730)
.+||.|++|||...... .|..+. ...........+|..+.++|++||.|+...|..
T Consensus 22 ~~vdlI~~DPPY~~~~~------~~d~~~--~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~ 77 (260)
T 1g60_A 22 KSVQLAVIDPPYNLSKA------DWDSFD--SHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF 77 (260)
T ss_dssp TCEEEEEECCCCSSCSS------GGGCCS--SHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH
T ss_pred cccCEEEECCCCCCCcc------cccccC--CHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcH
Confidence 57999999999753211 111111 112223344667888889999999988876543
No 387
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=74.39 E-value=3.4 Score=43.49 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=34.2
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
..+++|++||=.+|+ -|.-++|+|..++ ..|++. .+..|+..+ +.+|..
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G----------a~Vi~~-~~~~~~~~~----~~lGa~ 196 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARG----------ARVFAT-ARGSDLEYV----RDLGAT 196 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEE-ECHHHHHHH----HHHTSE
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCC----------CEEEEE-eCHHHHHHH----HHcCCC
Confidence 467899999998843 3555666666532 479999 888887755 446754
No 388
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=73.53 E-value=20 Score=36.16 Aligned_cols=62 Identities=6% Similarity=-0.004 Sum_probs=45.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+...+...+.+...|...
T Consensus 28 ~k~vlITG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 89 (286)
T 1xu9_A 28 GKKVIVTG-ASKGIGREMAYHLAKM-------GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 89 (286)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 66777555 5677788888877652 35799999999998888777776665566666666554
No 389
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=72.90 E-value=6.9 Score=40.56 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=32.7
Q ss_pred cCCCCCCEEEeec-CC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMC-AA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmC-AA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
..+++|++||=.+ +| -|..++|+|..++ ..|++.+ +..+... ++++|...
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G----------a~vi~~~-~~~~~~~----~~~lGa~~ 199 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKG----------TTVITTA-SKRNHAF----LKALGAEQ 199 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEE-CHHHHHH----HHHHTCSE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC----------CEEEEEe-ccchHHH----HHHcCCCE
Confidence 4789999999875 33 3556667766542 4788887 5555443 45678753
No 390
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=72.70 E-value=46 Score=33.29 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=45.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...++..+..++.+...|...
T Consensus 12 ~k~vlITG-as~GIG~~~a~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~ 73 (311)
T 3o26_A 12 RRCAVVTG-GNKGIGFEICKQLSSN-------GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD 73 (311)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS
T ss_pred CcEEEEec-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC
Confidence 55666444 5577888888887652 35899999999999888888776665667777777655
No 391
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=72.68 E-value=7.8 Score=41.16 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 77 QPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 77 ~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
++|++||=.+|+ -|..++|+|..++ ..|++.. +.+|+.++ +++|...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G----------a~Vi~~~-~~~~~~~~----~~lGa~~ 211 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG----------YIPIATC-SPHNFDLA----KSRGAEE 211 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT----------CEEEEEE-CGGGHHHH----HHTTCSE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC----------CEEEEEe-CHHHHHHH----HHcCCcE
Confidence 899999998883 5777788877643 3678774 78887754 4678653
No 392
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=72.41 E-value=5.6 Score=40.98 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=83.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-----CH----------------------HHHHHHH--
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-----DV----------------------QRCNLLI-- 128 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-----d~----------------------~Rl~~L~-- 128 (730)
|| .|++.+..-|+-+..++.+..--+. ..+...|+++|. .. ..+..+.
T Consensus 70 pG-~ivE~GV~rG~S~~~~a~~~~~l~~--~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 70 PG-VIMEFGVRFGRHLGTFAALRGVYEP--YNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp CS-EEEEECCTTCHHHHHHHHHHHHHCT--TCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred CC-eEEEEecccCHHHHHHHHHHHHhcc--cCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 45 8999999999988887765331000 013578899882 11 1122111
Q ss_pred -HHHHHcCC--CceEEEecccccC-CCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhccc
Q 004787 129 -HQTKRMCT--ANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNV 204 (730)
Q Consensus 129 -~nlkRlg~--~nv~vt~~Da~~f-p~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~ 204 (730)
++.++++. .++.+..+++... |.+. .......||.|.+|+-
T Consensus 147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l----------------~~~~~~~~dlv~ID~D------------------- 191 (257)
T 3tos_A 147 HECSDFFGHVTQRSVLVEGDVRETVPRYL----------------AENPQTVIALAYFDLD------------------- 191 (257)
T ss_dssp HHTTSTTTTSCCSEEEEESCHHHHHHHHH----------------HHCTTCCEEEEEECCC-------------------
T ss_pred HhhhhhcCCCCCcEEEEEecHHHHHHHHH----------------HhCCCCceEEEEEcCc-------------------
Confidence 12234554 5788888877541 1100 0011246999999873
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCEEEEEcCCC--CCCCcHHHHHHHHHHCCCcEEEEe
Q 004787 205 GLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM--NPVENEAVVAEILRKCEGSVELVD 262 (730)
Q Consensus 205 ~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl--~p~ENEaVV~~~L~~~~~~velvd 262 (730)
+..-....+...+.+|+|||.||+--... .|.+.+|| .+++.+.+..++.+.
T Consensus 192 -----~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~-~ef~~~~~~~i~~~p 245 (257)
T 3tos_A 192 -----LYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAM-RKVLGLDHAPLRLLP 245 (257)
T ss_dssp -----CHHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHH-HHHTCTTSSCCEECT
T ss_pred -----ccchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHH-HHHHhhCCCeEEEcc
Confidence 01112456777889999999999876532 35555554 888877765555544
No 393
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=70.90 E-value=11 Score=39.80 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=34.9
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||=.+| +-|..++|+|..++ ...|+..+.+.++...+ ..++.+|...
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~G---------a~vi~~~~~~~~~~~~~-~~~~~lGa~~ 219 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAALG---------LRTINVVRDRPDIQKLS-DRLKSLGAEH 219 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHT---------CEEEEEECCCSCHHHHH-HHHHHTTCSE
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHcC---------CEEEEEecCccchHHHH-HHHHhcCCcE
Confidence 47889999999987 35667888887754 24556666654432211 2345688654
No 394
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=70.51 E-value=9 Score=40.29 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=33.6
Q ss_pred cCCCCC-CEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPD-HFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg-~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++| ++||=.+| +-|..++|+|..++ ..|++...+...+...+..++++|...
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G----------a~vi~~~~~~~~~~~~~~~~~~lGa~~ 219 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN----------FNSISVIRDRPNLDEVVASLKELGATQ 219 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT----------CEEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCC----------CEEEEEecCccccHHHHHHHHhcCCeE
Confidence 368899 99998876 34556777777653 357777654443222222345678654
No 395
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=69.97 E-value=8.8 Score=40.72 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=31.6
Q ss_pred CCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 76 VQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 76 ~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
+++|++||=.+|+ -|.-++|+|..++ ..|++.+ +..|+..+ +++|..
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G----------a~Vi~~~-~~~~~~~~----~~lGa~ 229 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD----------AHVTAVC-SQDASELV----RKLGAD 229 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEEE-CGGGHHHH----HHTTCS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC----------CEEEEEe-ChHHHHHH----HHcCCC
Confidence 7899999988742 3445666665532 4788888 66776554 467765
No 396
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=69.36 E-value=16 Score=36.25 Aligned_cols=133 Identities=11% Similarity=0.069 Sum_probs=70.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||= .-|.|+...++++.|... ...|++++. +..++..+...++..+. ++.+...|......+. .
T Consensus 21 ~k~vlI-tGasggiG~~la~~l~~~-------G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~--~- 88 (274)
T 1ja9_A 21 GKVALT-TGAGRGIGRGIAIELGRR-------GASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVV--A- 88 (274)
T ss_dssp TCEEEE-TTTTSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHH--H-
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHC-------CCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHH--H-
Confidence 567774 456688888888888752 357889998 88888777776666553 4555666654421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...........+|.|+..+-....+.+. ..++.|..- ...++ .-...+++.++..++.||++|+.+
T Consensus 89 --------~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~---~~~n~-~~~~~l~~~~~~~~~~~~~iv~~s 155 (274)
T 1ja9_A 89 --------LFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKV---FNLNT-RGQFFVAQQGLKHCRRGGRIILTS 155 (274)
T ss_dssp --------HHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHH---HHHHH-HHHHHHHHHHHHHHhhCCEEEEEc
Confidence 0000001123689888755433322221 122222211 00111 122345666677666678988863
No 397
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=69.11 E-value=23 Score=36.19 Aligned_cols=149 Identities=10% Similarity=0.036 Sum_probs=72.5
Q ss_pred EEccccccchhhccCCCCCCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCce
Q 004787 61 TRQEAVSMVPPLFLDVQPDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANL 139 (730)
Q Consensus 61 ~~Qd~~Smlp~llLd~~pg~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv 139 (730)
+.|.+.+|-... ..-.|.+||=.+|+.| |.-..++..|... ...|+.++.+......+....+..+ .+
T Consensus 15 ~~~gp~~~~~~~--~~l~gk~~lVTGasg~~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~ 83 (293)
T 3grk_A 15 QTQGPGSMTAQS--GLLQGKRGLILGVANNRSIAWGIAKAAREA-------GAELAFTYQGDALKKRVEPLAEELG--AF 83 (293)
T ss_dssp --------------CTTTTCEEEEECCCSSSSHHHHHHHHHHHT-------TCEEEEEECSHHHHHHHHHHHHHHT--CE
T ss_pred cccCCCCCCccc--ccCCCCEEEEEcCCCCCcHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC--Cc
Confidence 345555554432 1234778888887754 4667777776542 3578999998766666665555554 35
Q ss_pred EEEecccccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCC----CCcc-ccChhhhhhcccccccchHHHH
Q 004787 140 IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG----DGTL-RKAPDIWRKWNVGLGNGLHSLQ 214 (730)
Q Consensus 140 ~vt~~Da~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG----dGtl-rk~pd~~~~w~~~~~~~L~~lQ 214 (730)
.+...|......+. . ............|.++..+--.. .+.+ ...++.|.. .-..++ .-.
T Consensus 84 ~~~~~Dv~d~~~v~--~---------~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~---~~~~N~-~g~ 148 (293)
T 3grk_A 84 VAGHCDVADAASID--A---------VFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTN---TMLISV-YSL 148 (293)
T ss_dssp EEEECCTTCHHHHH--H---------HHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHH---HHHHHT-HHH
T ss_pred eEEECCCCCHHHHH--H---------HHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHH---HHHHHH-HHH
Confidence 56666655421110 0 00000112246898888553222 1111 112222322 111111 123
Q ss_pred HHHHHHHHhhccCCCEEEEEc
Q 004787 215 VQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 215 ~~IL~rAl~lLKpGGrLVYST 235 (730)
..+++.++..++.+|+||+.+
T Consensus 149 ~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 149 TAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEEe
Confidence 456777788888899999864
No 398
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=68.65 E-value=7.1 Score=41.03 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=34.1
Q ss_pred cCCCCC--CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 74 LDVQPD--HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 74 Ld~~pg--~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
.++++| ++||-.+|+ |+.-..+++++... +.+.|++.|.+..|+..+.. .+|..
T Consensus 154 ~~~~~g~~~~vlI~Gas-ggiG~~~~~~a~~~------Ga~~Vi~~~~~~~~~~~~~~---~~g~~ 209 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAA-GACGSVAGQIGHFL------GCSRVVGICGTHEKCILLTS---ELGFD 209 (357)
T ss_dssp SCCCTTSCCEEEESSTT-BHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHH---TSCCS
T ss_pred cCCCCCCccEEEEECCC-cHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHH---HcCCc
Confidence 468899 999998873 33333333433321 12389999999988876643 25653
No 399
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=68.33 E-value=2.5 Score=44.62 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=27.9
Q ss_pred cCCCCCCEEEeecCC--cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHH
Q 004787 74 LDVQPDHFVLDMCAA--PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLL 127 (730)
Q Consensus 74 Ld~~pg~~VLDmCAA--PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L 127 (730)
.++++|++||=.+|+ -|..++|+|..++ ...|++.+ +..+...+
T Consensus 138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g---------~~~V~~~~-~~~~~~~~ 183 (349)
T 4a27_A 138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVP---------NVTVFGTA-STFKHEAI 183 (349)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHTTST---------TCEEEEEE-CGGGHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC---------CcEEEEeC-CHHHHHHH
Confidence 468899999988873 2444555554332 35788888 44555443
No 400
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=67.72 E-value=5.2 Score=42.27 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=35.2
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCC
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 239 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~ 239 (730)
.+||.|++|||.... .+.|. ............|..+.++|++||.|+.. |+.+
T Consensus 57 ~svDlI~tDPPY~~~------~d~~~-----~~~~~~~~~~~~l~~~~rvLk~~G~i~i~-~~~~ 109 (319)
T 1eg2_A 57 DSVQLIICDPPYNIM------LADWD-----DHMDYIGWAKRWLAEAERVLSPTGSIAIF-GGLQ 109 (319)
T ss_dssp TCEEEEEECCCSBCC------GGGGG-----TCSSHHHHHHHHHHHHHHHEEEEEEEEEE-ECSC
T ss_pred CCcCEEEECCCCCCC------CCCcc-----CHHHHHHHHHHHHHHHHHHcCCCeEEEEE-cCcc
Confidence 579999999997542 12222 12233344567778889999999988775 5543
No 401
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=67.39 E-value=26 Score=35.07 Aligned_cols=132 Identities=8% Similarity=0.025 Sum_probs=74.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEeccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHEA 146 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d------------~~Rl~~L~~nlkRlg~~nv~vt~~Da 146 (730)
|.+||=.+| .|+.-.+++..|... ...|+.+|.+ ..++..+...+...+ ..+.+...|.
T Consensus 10 gk~vlVTGa-s~gIG~~ia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~ 80 (287)
T 3pxx_A 10 DKVVLVTGG-ARGQGRSHAVKLAEE-------GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDV 80 (287)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCT
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC-------CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccC
Confidence 566776555 466777888877652 3579999987 777777777666655 3466666665
Q ss_pred ccCCCcccCCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc
Q 004787 147 QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK 226 (730)
Q Consensus 147 ~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK 226 (730)
.....+. . ............|.++..+--...+ .....+.|... -..++ .-...+++.++..++
T Consensus 81 ~~~~~v~--~---------~~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~ 144 (287)
T 3pxx_A 81 RDRAAVS--R---------ELANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADA---FDVDF-VGVINTVHAALPYLT 144 (287)
T ss_dssp TCHHHHH--H---------HHHHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHH---HHHHT-HHHHHHHHHHGGGCC
T ss_pred CCHHHHH--H---------HHHHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHH---hhhhh-hhhHHHHHHHHHHhh
Confidence 5422110 0 0000011124689998866433333 11223333321 11111 123456777888888
Q ss_pred CCCEEEEEc
Q 004787 227 VGGRIVYST 235 (730)
Q Consensus 227 pGGrLVYST 235 (730)
.+|+||+.+
T Consensus 145 ~~g~iv~is 153 (287)
T 3pxx_A 145 SGASIITTG 153 (287)
T ss_dssp TTCEEEEEC
T ss_pred cCcEEEEec
Confidence 899999864
No 402
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=66.75 E-value=20 Score=35.56 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=73.6
Q ss_pred CCCEEEeecCCcc-hHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPG-SKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPG-sKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.+.+||=.+|+ | +.-.+++..|... ...|+.+|.+..++..+...++..+...+.+...|......+. .
T Consensus 21 ~~k~vlITGas-g~GIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~--~ 90 (266)
T 3o38_A 21 KGKVVLVTAAA-GTGIGSTTARRALLE-------GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVD--A 90 (266)
T ss_dssp TTCEEEESSCS-SSSHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHH--H
T ss_pred CCCEEEEECCC-CCchHHHHHHHHHHC-------CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHH--H
Confidence 36677766663 3 3556666666542 3579999999999988888887666567777777766522110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhcc---CCCEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLK---VGGRIV 232 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK---pGGrLV 232 (730)
...........+|.|+..+--+..+.+.. .++.|..--.- ++ .-...+++.++..++ .+|+||
T Consensus 91 ---------~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~---n~-~~~~~l~~~~~~~~~~~~~~~~iv 157 (266)
T 3o38_A 91 ---------LITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNV---TL-TSVMRATRAALRYFRGVDHGGVIV 157 (266)
T ss_dssp ---------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH---HT-HHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred ---------HHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHH---Hh-HHHHHHHHHHHHHHHhcCCCeEEE
Confidence 00000111246899998664433333221 22333321111 11 112344555555553 568888
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
+.+
T Consensus 158 ~~s 160 (266)
T 3o38_A 158 NNA 160 (266)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 403
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=65.59 E-value=6.5 Score=41.25 Aligned_cols=46 Identities=17% Similarity=0.025 Sum_probs=29.5
Q ss_pred CCC-CEEEeecCCcchH---HHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC
Q 004787 77 QPD-HFVLDMCAAPGSK---TFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA 137 (730)
Q Consensus 77 ~pg-~~VLDmCAAPGsK---T~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~ 137 (730)
++| ..|| +.+|.|+. ++|+|..++ ..|++.|.+..|+..++ ++|..
T Consensus 162 ~~g~~~vl-i~gg~g~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~----~~Ga~ 211 (349)
T 3pi7_A 162 QEGEKAFV-MTAGASQLCKLIIGLAKEEG----------FRPIVTVRRDEQIALLK----DIGAA 211 (349)
T ss_dssp HHCCSEEE-ESSTTSHHHHHHHHHHHHHT----------CEEEEEESCGGGHHHHH----HHTCS
T ss_pred hCCCCEEE-EeCCCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHH----HcCCC
Confidence 556 4555 54455544 555555432 48999999999988764 46754
No 404
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=65.47 E-value=2.5 Score=41.76 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=74.8
Q ss_pred hhHHHHHhhhcCCCCCCCCCceEeecCCCC-----cceEEEEeCHHHHHHHHhccCCCCccEEEEceEeeEEEecCCCCC
Q 004787 503 TIINSIKTFYGIDDSFQLSGQLVSRNGDTN-----RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGN 577 (730)
Q Consensus 503 ~~~~~i~~fYgi~~~Fp~~~~l~~R~~~~~-----~~k~iy~~s~~vk~il~~n~~~g~~lkii~~GvK~F~rq~~~~~~ 577 (730)
.+++.+..|-|-+ . .+|+.| +++. +.+++||+|+.+.+.+++- .+.+++++|+.+ .+-. +.
T Consensus 11 ~vf~kL~~yiG~n--~---~~li~~-~~~~~~frl~~~rVyyv~~~i~~~a~~i----~r~~l~s~Gtc~-Gkft-k~-- 76 (188)
T 1sqw_A 11 VMFEKIAKYIGEN--L---QLLVDR-PDGTYCFRLHNDRVYYVSEKIMKLAANI----SGDKLVSLGTCF-GKFT-KT-- 76 (188)
T ss_dssp HHHHHHHHHHGGG--T---HHHHEE-TTEEEEEEEETTEEEEEEHHHHHTTTSS----CHHHHHHHSEEE-EEEC-TT--
T ss_pred HHHHHHHHHhccC--H---HHHhcC-CCCceEEEecCCEEEEECHHHHHHHhcC----CcCCeeEeeeEE-EEEe-cC--
Confidence 3566777776644 2 134333 3331 3589999999999975433 367899999865 4432 12
Q ss_pred CcccceeeccChhhhhhhcccCcEEecCHHHHHHHhhcCCCCccCCCChHHHHHHhcCCCceEEEEEcC
Q 004787 578 SAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSG 646 (730)
Q Consensus 578 ~~~c~~Ri~~eGl~~l~p~i~~r~v~~~~~d~~~lL~~~~~~~~~~~~~~~~~~~~~l~~G~~vl~~~~ 646 (730)
=.||++-+|+.+|.||-..|+ .+..+--..+|-..++.-..+.. .=+++..|--|+++..
T Consensus 77 ---gkF~L~It~l~~La~~~~~kV-~Vk~~~E~~flyG~nVfk~~V~~-----i~e~i~~~~~VvV~n~ 136 (188)
T 1sqw_A 77 ---HKFRLHVTALDYLAPYAKYKV-WIKPGAEQSFLYGNHVLKSGLGR-----ITENTSQYQGVVVYSM 136 (188)
T ss_dssp ---SCEEECGGGHHHHGGGCSCEE-EECHHHHHHHTTTCCEEGGGEEE-----ECTTCCTTCEEEEEET
T ss_pred ---CcEEEchhHHHHhhhccCcEE-EECCCceeeEEeccchhHHhhhh-----cCCCCCCCCEEEEEeC
Confidence 389999999999999966554 45544444556555543322211 1124556777777773
No 405
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=64.81 E-value=25 Score=35.93 Aligned_cols=62 Identities=6% Similarity=0.017 Sum_probs=44.5
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|.+||=.+|+ |+.-..++..|... ...|+..+.+..++..+...+...+. .+.+...|...
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 91 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARR-------GARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRH 91 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 46677766655 66778888877652 35799999999999888887776653 45666666554
No 406
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=61.77 E-value=21 Score=35.49 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=71.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEecccccCCCcccCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM--CTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl--g~~nv~vt~~Da~~fp~~~~~~ 156 (730)
+.+||=.+| .|+....+++.|... ...|+.++.+..++..+...+... +...+.+...|......+. .
T Consensus 7 ~k~~lVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~--~ 76 (250)
T 3nyw_A 7 KGLAIITGA-SQGIGAVIAAGLATD-------GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKAD--T 76 (250)
T ss_dssp CCEEEEEST-TSHHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHH--H
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHH--H
Confidence 456665554 566777777777642 357999999999998888887665 3245666666655422110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhc--cCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL--KVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL--KpGGrLVYS 234 (730)
............|.++..+--...+.+...++.|..- -..++. -...+++.++..+ +.+|+||+.
T Consensus 77 ---------~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~---~~vN~~-g~~~l~~~~~~~~~~~~~g~iv~i 143 (250)
T 3nyw_A 77 ---------EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKI---MEINVI-AQYGILKTVTEIMKVQKNGYIFNV 143 (250)
T ss_dssp ---------HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHH---HHHHTH-HHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ---------HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHH---HHHHHH-HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0000011124689888866444344442222333321 111111 1133455555544 346888875
Q ss_pred c
Q 004787 235 T 235 (730)
Q Consensus 235 T 235 (730)
+
T Consensus 144 s 144 (250)
T 3nyw_A 144 A 144 (250)
T ss_dssp C
T ss_pred c
Confidence 4
No 407
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=61.03 E-value=19 Score=35.61 Aligned_cols=135 Identities=6% Similarity=-0.020 Sum_probs=71.6
Q ss_pred CCCCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccC
Q 004787 77 QPDHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRAN 155 (730)
Q Consensus 77 ~pg~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~ 155 (730)
..+.+||=.+|+ .|+.-.++++.|... ...|+.++.+......+....+..+ .+.+...|......+.
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~-- 80 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKRE-------GAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQID-- 80 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT-------TCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHH--
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHc-------CCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHH--
Confidence 457788877774 377778888887653 3579999988665565555555554 2455555654421110
Q ss_pred CCCCCCCccccccccccccccccEEEecCCCCCC----Cccc--cChhhhhhcccccccchHHHHHHHHHHHHhhccCCC
Q 004787 156 KNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTLR--KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 229 (730)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtlr--k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGG 229 (730)
. ............|.++..+--... +.+. ..++.|..-- ..++ .-...+++.++..++.+|
T Consensus 81 ~---------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~---~~n~-~~~~~l~~~~~~~~~~~g 147 (271)
T 3ek2_A 81 A---------LFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAH---DISA-YSFPALAKAALPMLSDDA 147 (271)
T ss_dssp H---------HHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHH---HHHT-THHHHHHHHHGGGEEEEE
T ss_pred H---------HHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHH---hhhH-HHHHHHHHHHHHHhccCc
Confidence 0 000001112468988885532221 1111 1222232210 0111 123456777788888889
Q ss_pred EEEEEc
Q 004787 230 RIVYST 235 (730)
Q Consensus 230 rLVYST 235 (730)
+||+.+
T Consensus 148 ~iv~is 153 (271)
T 3ek2_A 148 SLLTLS 153 (271)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 988764
No 408
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=59.57 E-value=1.2e+02 Score=29.83 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=42.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRl-g~~nv~vt~~Da~~ 148 (730)
+.+|| +.-|.|+.-.+++..|... ...|++++. +..++..+...+... + .++.+...|...
T Consensus 11 ~k~~l-VTGas~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 73 (276)
T 1mxh_A 11 CPAAV-ITGGARRIGHSIAVRLHQQ-------GFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSL 73 (276)
T ss_dssp CCEEE-ETTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSS
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCC
Confidence 45666 4556677888888888652 357999999 888888777766554 4 356666666554
No 409
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=59.28 E-value=35 Score=34.03 Aligned_cols=62 Identities=5% Similarity=0.049 Sum_probs=45.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-.+++..|... ...|+.+|.+..++..+...++..+...+.+...|...
T Consensus 10 ~k~vlVTG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~ 71 (262)
T 3pk0_A 10 GRSVVVTG-GTKGIGRGIATVFARA-------GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD 71 (262)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC
Confidence 55666555 4567778888877652 35899999999999888888777665567777777655
No 410
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=58.88 E-value=49 Score=35.31 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=43.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~---~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.+|++.|... +...|+++|.+...+..+...+..... .++.+...|...
T Consensus 35 ~k~vLVTG-atG~IG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d 100 (399)
T 3nzo_A 35 QSRFLVLG-GAGSIGQAVTKEIFKR------NPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGS 100 (399)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHTT------CCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECCCTTS
T ss_pred CCEEEEEc-CChHHHHHHHHHHHHC------CCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEEEeCCC
Confidence 56677555 5688999999988752 113899999999998887776655321 456666666544
No 411
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=58.32 E-value=22 Score=35.34 Aligned_cols=131 Identities=7% Similarity=0.062 Sum_probs=72.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
.|.+||=.+| .|+.-.++++.|... ...|+.+|.+..++..+...+ + ..+.+...|......+.-
T Consensus 7 ~gk~~lVTGa-s~gIG~a~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~--- 71 (255)
T 4eso_A 7 QGKKAIVIGG-THGMGLATVRRLVEG-------GAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAV--- 71 (255)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHH---
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHH---
Confidence 3667776665 566777888877652 358999999998887766544 2 345666666554221100
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...........+|.++..+-.+..+.+.. .++.|..- -..++ .-...+++.++.+++.+|+||+.+
T Consensus 72 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 72 --------LGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQ---FAVNT-KGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp --------HHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHH---HHHhh-HHHHHHHHHHHHHHhcCCEEEEEC
Confidence 00000111246898888654433333222 23333321 11111 122456777788888889999864
No 412
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=57.48 E-value=5.5 Score=41.85 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=38.9
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHH
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 252 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~ 252 (730)
.++|.||+|+.-.-.|. ++ ..-......++. ++.-|+++|+|||.+|--.--..--.-|.++..+.+
T Consensus 205 ~k~DvV~SDMApn~sGh---------~y-qQC~DHarii~L-al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR 271 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYH---------HY-QQCEDHAIKLSM-LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIAR 271 (320)
T ss_dssp CCEEEEEEECCCCCCSC---------HH-HHHHHHHHHHHH-THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHT
T ss_pred CcCCEEEEcCCCCCCCc---------cc-cccchHHHHHHH-HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHH
Confidence 67999999985444442 00 000011122333 889999999999999966544432234555544443
No 413
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=56.64 E-value=47 Score=33.56 Aligned_cols=62 Identities=3% Similarity=-0.108 Sum_probs=43.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-..+++.|... ...|+++|.+..++..+...+...+...+.+...|...
T Consensus 33 gk~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 94 (281)
T 4dry_A 33 GRIALVTG-GGTGVGRGIAQALSAE-------GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD 94 (281)
T ss_dssp -CEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC
Confidence 55666555 5577788888887652 35899999999998888877766554445666666554
No 414
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=56.45 E-value=64 Score=32.47 Aligned_cols=62 Identities=6% Similarity=0.058 Sum_probs=42.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+..||=.+| .|+.-.++++.|... ...|+.+|. +..++..+...+...+. .+.+...|...
T Consensus 28 ~~k~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d 90 (280)
T 4da9_A 28 ARPVAIVTGG-RRGIGLGIARALAAS-------GFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLAD 90 (280)
T ss_dssp CCCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTS
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC-------CCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 3556665554 566777788877652 357888885 78888877777766653 46666677655
No 415
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=56.38 E-value=17 Score=37.33 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=44.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-..+++.|... ...|+.+|.+..++..+...+...+...+.+...|...
T Consensus 41 ~k~vlVTG-as~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 102 (293)
T 3rih_A 41 ARSVLVTG-GTKGIGRGIATVFARA-------GANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD 102 (293)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC
Confidence 45666544 5677778888877652 35899999999988888777766654567777777654
No 416
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=55.91 E-value=44 Score=32.95 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=41.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da 146 (730)
|.+||=.+| .|+.-..++..|... ...|+.+|.+..++..+...+...+...+.+...|.
T Consensus 12 ~k~vlVTGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~ 71 (252)
T 3f1l_A 12 DRIILVTGA-SDGIGREAAMTYARY-------GATVILLGRNEEKLRQVASHINEETGRQPQWFILDL 71 (252)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCT
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 556665554 566777788777652 358999999999998888777665544455555554
No 417
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=55.74 E-value=55 Score=32.42 Aligned_cols=133 Identities=8% Similarity=0.023 Sum_probs=71.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
|.+||=.+ |.|+.-.+++..|... ...|+.+|.+..++..+...+...+. .+.+...|......+. .
T Consensus 12 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~--~-- 78 (256)
T 3gaf_A 12 DAVAIVTG-AAAGIGRAIAGTFAKA-------GASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHRE--A-- 78 (256)
T ss_dssp TCEEEECS-CSSHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHH--H--
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHH--H--
Confidence 55666555 4566777777777542 35799999999999888888877653 4556666655421110 0
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhcc--CCCEEEEEc
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLK--VGGRIVYST 235 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLK--pGGrLVYST 235 (730)
............|.++..+--...+.+...++.|..- -..++. -...+++.++..++ .+|+||+.+
T Consensus 79 -------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~---~~vN~~-g~~~l~~~~~~~~~~~~~g~iv~is 146 (256)
T 3gaf_A 79 -------VIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWA---FKLNLF-SLFRLSQLAAPHMQKAGGGAILNIS 146 (256)
T ss_dssp -------HHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHH---HHHHTH-HHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred -------HHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHH---HHHHhH-HHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 0000011124689998866444334332233334321 111111 12334555555543 368888754
No 418
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=55.52 E-value=53 Score=31.89 Aligned_cols=61 Identities=7% Similarity=0.138 Sum_probs=42.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=. -|.|+...++++.|... ...|++++.+..++..+...++..+. ++.+...|...
T Consensus 11 ~~~vlVt-GasggiG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 71 (255)
T 1fmc_A 11 GKCAIIT-GAGAGIGKEIAITFATA-------GASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITS 71 (255)
T ss_dssp TCEEEET-TTTSHHHHHHHHHHHTT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEEE-CCccHHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCC
Confidence 5566644 46688888888888652 35799999999988877777765543 45556666544
No 419
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=54.66 E-value=7.6 Score=40.39 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.0
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
-+-..|+.+|+|||.+|...--+.----|.||..+-++
T Consensus 240 mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARk 277 (324)
T 3trk_A 240 MLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRK 277 (324)
T ss_dssp HHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhh
Confidence 35678999999999999998888888889998877664
No 420
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=54.39 E-value=51 Score=32.79 Aligned_cols=133 Identities=10% Similarity=0.040 Sum_probs=71.4
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR-lg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+..||=.+| .|+.-..+++.|... ...|+.+|.+..++..+...+.. .+...+.+...|......+. .
T Consensus 8 ~k~~lVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~--~- 76 (265)
T 3lf2_A 8 EAVAVVTGG-SSGIGLATVELLLEA-------GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVR--A- 76 (265)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHH--H-
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHH--H-
Confidence 556665554 566777788777652 35799999999999888887766 44444666666665422110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccC--CCEEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV--GGRIVYS 234 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp--GGrLVYS 234 (730)
............|.++..+--+..+.+. ..++.|..- -..++ .-...+++.++..++. +|+||+.
T Consensus 77 --------~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~~~~~~~~~~~~~~~g~iv~i 144 (265)
T 3lf2_A 77 --------FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEE---LQLKF-FSVIHPVRAFLPQLESRADAAIVCV 144 (265)
T ss_dssp --------HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHH---HHHHH-HHHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH---HHHHH-HHHHHHHHHHHHHhhccCCeEEEEE
Confidence 0000011124689888865433333222 122333321 11111 1223455566665543 5788864
No 421
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=53.51 E-value=1.2e+02 Score=33.25 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHCCC----cEEEEec
Q 004787 218 AMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG----SVELVDV 263 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~~~----~velvd~ 263 (730)
.....+.|++|..+|+.+ |+.|.-.+.+...+++..+. .+.+++.
T Consensus 112 ~~~i~~~l~~g~iVV~~S-TV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~ 160 (431)
T 3ojo_A 112 LDSILPFLKKGNTIIVES-TIAPKTMDDFVKPVIENLGFTIGEDIYLVHC 160 (431)
T ss_dssp HHHHGGGCCTTEEEEECS-CCCTTHHHHTHHHHHHTTTCCBTTTEEEEEC
T ss_pred HHHHHHhCCCCCEEEEec-CCChhHHHHHHHHHHHHcCCCcCCCeEEEEC
Confidence 345567789977777654 88888899998888885442 3666664
No 422
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=53.13 E-value=71 Score=31.80 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=72.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|.+||=.+| .|+.-..+++.|... ...|+..+. +..++..+...++..+. .+.+...|......+. .
T Consensus 18 ~k~~lVTGa-s~gIG~aia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~--~- 85 (270)
T 3is3_A 18 GKVALVTGS-GRGIGAAVAVHLGRL-------GAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIV--K- 85 (270)
T ss_dssp TCEEEESCT-TSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHH--H-
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHH--H-
Confidence 566775554 566777888877652 346777665 56777777777776653 4556666655422110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
............|.++..+--...+.+.. .++.|..- -..++ .-...+++.++..++.+|+||+.+-
T Consensus 86 --------~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 86 --------LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRV---FSLNT-RGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp --------HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH---HHHHh-HHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 00000111246788887554333333221 22333321 11111 1234567778888888999998644
No 423
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=51.77 E-value=91 Score=32.07 Aligned_cols=62 Identities=5% Similarity=0.029 Sum_probs=44.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
|.+||=.+| .|+...+++..|... .-.|++.+.+..++..+...+...+. ..+.+...|...
T Consensus 8 ~k~vlVTGa-s~gIG~~la~~l~~~-------G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 70 (319)
T 3ioy_A 8 GRTAFVTGG-ANGVGIGLVRQLLNQ-------GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS 70 (319)
T ss_dssp TCEEEEETT-TSTHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC
T ss_pred CCEEEEcCC-chHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence 556776665 577788888887652 35799999999999888888776654 256777777654
No 424
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=51.39 E-value=65 Score=31.26 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=44.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA 146 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da 146 (730)
.|.+||=.+ |.|+.-.+++..|... ...|+..+.+..++..+...++..+...+.+...|.
T Consensus 13 ~~k~vlITG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~ 73 (247)
T 3i1j_A 13 KGRVILVTG-AARGIGAAAARAYAAH-------GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL 73 (247)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCT
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 356676555 5577778888877652 357999999999999998888887755555555544
No 425
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=51.25 E-value=63 Score=32.91 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=42.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-..++..|... ...|++++.+..++..+...+...+.. .+.+...|...
T Consensus 26 ~k~vlVTG-as~gIG~aia~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d 89 (297)
T 1xhl_A 26 GKSVIITG-SSNGIGRSAAVIFAKE-------GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE 89 (297)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC
Confidence 55666544 5677788888877652 357999999999888777777665532 46666666554
No 426
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=50.88 E-value=90 Score=31.01 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=43.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR-MCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkR-lg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-..+++.|... ...|+.++.+..++..+...+.. .+ ..+.+...|...
T Consensus 20 ~k~vlVTG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~ 81 (266)
T 4egf_A 20 GKRALITG-ATKGIGADIARAFAAA-------GARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAE 81 (266)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 55666555 4566778888887652 35799999999998888777765 34 356666677655
No 427
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=50.33 E-value=97 Score=30.76 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=43.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...++++.|... ...|++++.+..++..+...++..+. ..+.+...|...
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 94 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQ-------GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 94 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC
Confidence 55666555 5677788888877652 35799999999998888777777664 345666666554
No 428
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=50.00 E-value=54 Score=32.89 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=28.1
Q ss_pred CCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHH
Q 004787 78 PDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (730)
Q Consensus 78 pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~ 122 (730)
.|.+||=.+|++ |+...+++..|... ...|++++.+..
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~-------G~~V~~~~r~~~ 58 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHRE-------GAQLAFTYATPK 58 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT-------TCEEEEEESSGG
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc-------CCEEEEEeCCHH
Confidence 366788777763 77888888887652 357999998875
No 429
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=49.95 E-value=64 Score=32.69 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=70.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHH-HHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~R-l~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.|.+||=.+| .|+.-..++..|... ...|+..+.+... ...+...++..+ ..+.+...|......+. .
T Consensus 46 ~gk~vlVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~--~ 114 (291)
T 3ijr_A 46 KGKNVLITGG-DSGIGRAVSIAFAKE-------GANIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCK--D 114 (291)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHH--H
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHH--H
Confidence 3567776665 566777888877652 3578899988653 444444444444 34666666655421110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCC-CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG-dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
............|.++..+--.. .+.+. -.++.|..- -..++ .-...+++.++..++.+|+||+.
T Consensus 115 ---------~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~---~~vN~-~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 115 ---------IVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKT---FRINI-FSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp ---------HHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHH---HHHHT-HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred ---------HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHH---HHHHh-HHHHHHHHHHHHHHhhCCEEEEE
Confidence 00000111246898887553221 11111 123333321 11111 22345778888888889999986
Q ss_pred c
Q 004787 235 T 235 (730)
Q Consensus 235 T 235 (730)
+
T Consensus 182 s 182 (291)
T 3ijr_A 182 A 182 (291)
T ss_dssp C
T ss_pred e
Confidence 4
No 430
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=49.32 E-value=86 Score=30.97 Aligned_cols=62 Identities=8% Similarity=0.020 Sum_probs=44.4
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+.+||=.+ |.|+.-.+++..|... ...|++.+.+..++..+...+...+. .+.+...|...
T Consensus 28 ~~k~vlITG-as~gIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 89 (262)
T 3rkr_A 28 SGQVAVVTG-ASRGIGAAIARKLGSL-------GARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSH 89 (262)
T ss_dssp TTCEEEESS-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCC
Confidence 356677555 4577788888887652 35799999999999888888776653 46666666554
No 431
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=47.45 E-value=53 Score=32.76 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=41.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEecc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHE 145 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d------------~~Rl~~L~~nlkRlg~~nv~vt~~D 145 (730)
.|.+||=.+ |.|+.-.+++..|... ...|+++|.+ ..++..+...+...+. .+.+...|
T Consensus 12 ~gk~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 82 (278)
T 3sx2_A 12 TGKVAFITG-AARGQGRAHAVRLAAD-------GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQAD 82 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHT-------TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC-------CCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 356677655 4566777888877652 3579999987 7777777777766653 46666666
Q ss_pred ccc
Q 004787 146 AQH 148 (730)
Q Consensus 146 a~~ 148 (730)
...
T Consensus 83 ~~~ 85 (278)
T 3sx2_A 83 VRD 85 (278)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 432
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=47.21 E-value=52 Score=33.17 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=46.4
Q ss_pred ccccccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 004787 63 QEAVSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT 142 (730)
Q Consensus 63 Qd~~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt 142 (730)
|.+.+|-....+++ .|.+||=.+| .|+.-..++..|... ...|+.++.+..++..+...+...+. .+.+.
T Consensus 17 ~g~~~m~~~~~~~l-~gk~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~ 86 (276)
T 3r1i_A 17 QGPGSMSVLDLFDL-SGKRALITGA-STGIGKKVALAYAEA-------GAQVAVAARHSDALQVVADEIAGVGG-KALPI 86 (276)
T ss_dssp ------CGGGGGCC-TTCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEESSGGGGHHHHHHHHHTTC-CCEEE
T ss_pred cCCCCcccccccCC-CCCEEEEeCC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEE
Confidence 34455533333343 3566775555 567777888877652 35899999999998888888776654 45555
Q ss_pred eccccc
Q 004787 143 NHEAQH 148 (730)
Q Consensus 143 ~~Da~~ 148 (730)
..|...
T Consensus 87 ~~Dl~d 92 (276)
T 3r1i_A 87 RCDVTQ 92 (276)
T ss_dssp ECCTTC
T ss_pred EcCCCC
Confidence 666554
No 433
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=46.87 E-value=1.3e+02 Score=29.07 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=43.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.++++.|... ...|++.+.+..++..+...++..+. .+.+...|...
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~-------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASK-------GATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISD 65 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCC
Confidence 44566555 5577778888887753 35799999999999888888877653 45666666554
No 434
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=46.17 E-value=1.2e+02 Score=29.97 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=41.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-.+++..|... ...|+++|.+..++..+...+...+. ..+.....|...
T Consensus 10 ~k~~lVTG-as~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~ 72 (267)
T 3t4x_A 10 GKTALVTG-STAGIGKAIATSLVAE-------GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT 72 (267)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC
Confidence 55666555 5567778888877652 35899999999998888877766542 334555555443
No 435
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=45.93 E-value=28 Score=36.58 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=37.3
Q ss_pred cCCCCCCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCc
Q 004787 74 LDVQPDHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTAN 138 (730)
Q Consensus 74 Ld~~pg~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~n 138 (730)
.++++|++||=.+||+ |..++|+|..+. ...|++.|.+.+|+..++ .+|...
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~---------Ga~Vi~~~~~~~~~~~~~----~lGa~~ 234 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT---------PATVIALDVKEEKLKLAE----RLGADH 234 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHC---------CCEEEEEESSHHHHHHHH----HTTCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHH----HhCCCE
Confidence 5788999999998853 334566666541 137999999999988764 577653
No 436
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=45.13 E-value=66 Score=32.16 Aligned_cols=62 Identities=6% Similarity=-0.050 Sum_probs=41.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.+++..|... ...|++++.+..++..+...+...+.. .+.+...|...
T Consensus 6 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (280)
T 1xkq_A 6 NKTVIITG-SSNGIGRTTAILFAQE-------GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT 69 (280)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC
Confidence 45566555 5667778888877652 357999999999888777666554431 46666666554
No 437
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=44.75 E-value=43 Score=33.44 Aligned_cols=133 Identities=9% Similarity=0.052 Sum_probs=66.1
Q ss_pred CCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||=.+|+ +|+...+++..|... ...|++++.+......+.+.....+ .+.+...|......+. .
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~--~- 73 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQ-------GATLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFK--S- 73 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTT-------TCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHH--H-
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHH--H-
Confidence 5678877775 378888888888752 3579999988752222222222233 2444555544321110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
............|.++..+--... +.+ ...++.|... -..++ .-...+++.++..++.+|+||
T Consensus 74 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~~~g~iv 141 (275)
T 2pd4_A 74 --------LYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTA---MEISV-YSLIELTNTLKPLLNNGASVL 141 (275)
T ss_dssp --------HHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHGGGEEEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHH---HHHHh-HHHHHHHHHHHHHhccCCEEE
Confidence 000000112467988875532221 111 1122223221 11111 123456677777777789998
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
+.+
T Consensus 142 ~is 144 (275)
T 2pd4_A 142 TLS 144 (275)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 438
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=44.68 E-value=1.5e+02 Score=29.31 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=41.3
Q ss_pred CcEEEccc--cccchhhccCCCCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC
Q 004787 58 GNITRQEA--VSMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135 (730)
Q Consensus 58 G~i~~Qd~--~Smlp~llLd~~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg 135 (730)
+.+.+|.. .+|.... ++ .|.+||=.+ |.|+.-.++++.|... ...|+.+|.+..++..+...+ +
T Consensus 10 ~~~~~~~~gp~~m~~~~--~l-~~k~vlVTG-as~GIG~aia~~l~~~-------G~~Vi~~~r~~~~~~~~~~~~---~ 75 (281)
T 3ppi_A 10 GTLEAQTQGPGSMVTIK--QF-EGASAIVSG-GAGGLGEATVRRLHAD-------GLGVVIADLAAEKGKALADEL---G 75 (281)
T ss_dssp --------------CCG--GG-TTEEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---C
T ss_pred CCCCCcccCcchhhhhh--cc-CCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCChHHHHHHHHHh---C
Confidence 44555543 4443322 22 356667555 4566777888777652 357999999999887766554 3
Q ss_pred CCceEEEeccccc
Q 004787 136 TANLIVTNHEAQH 148 (730)
Q Consensus 136 ~~nv~vt~~Da~~ 148 (730)
..+.+...|...
T Consensus 76 -~~~~~~~~Dl~~ 87 (281)
T 3ppi_A 76 -NRAEFVSTNVTS 87 (281)
T ss_dssp -TTEEEEECCTTC
T ss_pred -CceEEEEcCCCC
Confidence 346666666554
No 439
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=44.30 E-value=1.1e+02 Score=33.96 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHH-HHCC----CcEEEEec
Q 004787 218 AMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL-RKCE----GSVELVDV 263 (730)
Q Consensus 218 L~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L-~~~~----~~velvd~ 263 (730)
+......|++|..+|+.+ |+.|.-.+.+...++ +..+ ..+.+++.
T Consensus 130 ~~~i~~~l~~g~iVV~~S-Tv~pgtt~~v~~~ile~~~g~~~~~d~~v~~~ 179 (478)
T 3g79_A 130 IRNVGKYLKPGMLVVLES-TITPGTTEGMAKQILEEESGLKAGEDFALAHA 179 (478)
T ss_dssp HHHHHHHCCTTCEEEECS-CCCTTTTTTHHHHHHHHHHCCCBTTTBEEEEC
T ss_pred HHHHHhhcCCCcEEEEeC-CCChHHHHHHHHHHHHHhcCCCcCCceeEEeC
Confidence 445566789988777654 899999999988888 3333 24667665
No 440
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=43.46 E-value=83 Score=30.91 Aligned_cols=60 Identities=7% Similarity=-0.011 Sum_probs=40.1
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+||=.+ |.|+.-.+++..|... ...|++++.+..++..+...+...+. .+.+...|...
T Consensus 3 k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 62 (256)
T 1geg_A 3 KVALVTG-AGQGIGKAIALRLVKD-------GFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSD 62 (256)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTS
T ss_pred CEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 3455444 5677788888877652 35799999999888877776665543 45555566544
No 441
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=43.42 E-value=45 Score=33.05 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=65.3
Q ss_pred CCEEEeecCC-cchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAA-PGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAA-PGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||=.+|+ .|+.-.++++.|... ...|++++.+......+.+.....+ .+.+...|......+. .
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~--~- 75 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEA-------GAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELD--A- 75 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHH-------TCEEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHH--H-
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHH--H-
Confidence 5678877775 377888888877642 3479999988752223322222333 2455555654421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCC----Ccc-ccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGD----GTL-RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 232 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGd----Gtl-rk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLV 232 (730)
...........+|.|+..+--... +.+ ...++.|... -..++ .-...+++.++..++.+|+||
T Consensus 76 --------~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~~~g~iv 143 (261)
T 2wyu_A 76 --------LFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLA---LEVSA-YSLVAVARRAEPLLREGGGIV 143 (261)
T ss_dssp --------HHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHTTTEEEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHH---HHHhh-HHHHHHHHHHHHHhccCCEEE
Confidence 000000112368988875532211 111 1122223221 11111 122456667777776678999
Q ss_pred EEc
Q 004787 233 YST 235 (730)
Q Consensus 233 YST 235 (730)
+.+
T Consensus 144 ~is 146 (261)
T 2wyu_A 144 TLT 146 (261)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 442
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=43.38 E-value=1.1e+02 Score=30.64 Aligned_cols=135 Identities=7% Similarity=0.033 Sum_probs=73.2
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
.|.+||=.+|+ |+.-..+++.|... ...|+..+. +..++..+...++..+. .+.+...|......+. .
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~--~ 98 (271)
T 3v2g_A 30 AGKTAFVTGGS-RGIGAAIAKRLALE-------GAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIE--Q 98 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHH--H
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC-------CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHH--H
Confidence 35677766654 66777788777652 346777755 46777777777776654 4555666655421110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
............|.++..+-....+.+.. .++.|... -..++. -...+++.++..++.+|+||+.+
T Consensus 99 ---------~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~---~~vN~~-g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 99 ---------AIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEV---MAVNFR-APFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp ---------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHH---HHHHTH-HHHHHHHHHHHHCCTTCEEEEEC
T ss_pred ---------HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHH---HHHHhH-HHHHHHHHHHHHHhcCCEEEEEe
Confidence 00000111246899988664333333221 22333321 111111 22356777788888899999875
Q ss_pred C
Q 004787 236 C 236 (730)
Q Consensus 236 C 236 (730)
-
T Consensus 166 S 166 (271)
T 3v2g_A 166 S 166 (271)
T ss_dssp C
T ss_pred C
Confidence 4
No 443
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=43.23 E-value=79 Score=32.05 Aligned_cols=133 Identities=10% Similarity=0.003 Sum_probs=70.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEecccccCCCcccCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD--VQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK 156 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d--~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~ 156 (730)
|.+||=.+| .|+.-.+++..|... ...|+.++.+ ..+...+...++..+. .+.+...|......+. .
T Consensus 49 ~k~vlVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~--~ 117 (294)
T 3r3s_A 49 DRKALVTGG-DSGIGRAAAIAYARE-------GADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFAR--S 117 (294)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHH--H
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHH--H
Confidence 566776665 566778888877652 3578888876 3456666666666553 4555555554321110 0
Q ss_pred CCCCCCccccccccccccccccEEEecCCCCC-CCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 157 NFSSASDKGIESESNMGQLLFDRVLCDVPCSG-DGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG-dGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
............|.++..+--.. .+.+. -.++.|..- -..++ .-...+++.++..++.+|+||+.
T Consensus 118 ---------~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~---~~vN~-~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 118 ---------LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQT---FAVNV-FALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp ---------HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHH---HHHHT-HHHHHHHHHHGGGCCTTCEEEEE
T ss_pred ---------HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHH---HHHHh-HHHHHHHHHHHHHhhcCCEEEEE
Confidence 00000111246898887553211 12221 123333321 11111 12345777888888889999986
Q ss_pred c
Q 004787 235 T 235 (730)
Q Consensus 235 T 235 (730)
+
T Consensus 185 s 185 (294)
T 3r3s_A 185 S 185 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 444
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=43.14 E-value=97 Score=29.77 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=41.3
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+||=.+ |.|+.-.++++.|... ...|+..+.+..++..+.+.+.......+.+...|...
T Consensus 3 k~vlITG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 63 (235)
T 3l77_A 3 KVAVITG-ASRGIGEAIARALARD-------GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK 63 (235)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC
Confidence 3455444 5677778888887653 35799999999999888777753222456666666654
No 445
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=43.07 E-value=92 Score=30.69 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=43.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+.-..++..|... ...|+++|.+..++..+...++..+. ++.+...|...
T Consensus 7 ~k~vlVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 67 (252)
T 3h7a_A 7 NATVAVIGA-GDYIGAEIAKKFAAE-------GFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARN 67 (252)
T ss_dssp SCEEEEECC-SSHHHHHHHHHHHHT-------TCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCC
Confidence 456665554 566777888877652 35799999999999988888877653 56666666654
No 446
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=43.07 E-value=24 Score=40.31 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=32.4
Q ss_pred HHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHHC
Q 004787 216 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 254 (730)
Q Consensus 216 ~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~~ 254 (730)
-|-..|+.+|+|||.+|.-.--+.----|.||..+-++.
T Consensus 250 ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF 288 (670)
T 4gua_A 250 TLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKF 288 (670)
T ss_dssp HHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTE
T ss_pred HHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhhe
Confidence 355789999999999999888887777889988877754
No 447
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=42.82 E-value=1.4e+02 Score=32.72 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 88 APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 88 APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
|.|..-..+|..|... .-.|+++|+++.++..+..
T Consensus 9 G~G~vG~~lA~~La~~-------G~~V~~~D~~~~~v~~l~~ 43 (450)
T 3gg2_A 9 GIGYVGLVSATCFAEL-------GANVRCIDTDRNKIEQLNS 43 (450)
T ss_dssp CCSHHHHHHHHHHHHT-------TCEEEEECSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHHHc
Confidence 5577777777777642 2479999999999988765
No 448
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=41.03 E-value=1.4e+02 Score=28.99 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=39.6
Q ss_pred CCCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 77 QPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 77 ~pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.++.+||=.+ |.|+.-.+++..|... ...|++.+.+..++..+...+ . ..+.+...|...
T Consensus 12 ~~~k~vlVTG-as~gIG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~ 71 (249)
T 3f9i_A 12 LTGKTSLITG-ASSGIGSAIARLLHKL-------GSKVIISGSNEEKLKSLGNAL---K-DNYTIEVCNLAN 71 (249)
T ss_dssp CTTCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---C-SSEEEEECCTTS
T ss_pred CCCCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHh---c-cCccEEEcCCCC
Confidence 3566777555 5567778888877652 357999999998887665544 2 345555555443
No 449
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=40.96 E-value=1e+02 Score=29.96 Aligned_cols=61 Identities=2% Similarity=-0.038 Sum_probs=36.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTK-RMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlk-Rlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...++++.|... ...|++++.+..+...+...+. ..+ ..+.+...|...
T Consensus 14 ~k~vlITG-asggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~ 75 (265)
T 1h5q_A 14 NKTIIVTG-GNRGIGLAFTRAVAAA-------GANVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSN 75 (265)
T ss_dssp TEEEEEET-TTSHHHHHHHHHHHHT-------TEEEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCeEEEEeCcchhhHHHHHHHHHhcC-CeeEEEEeeCCC
Confidence 55666555 5677888888887652 3579999986554443333332 233 345666666554
No 450
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=40.89 E-value=1.2e+02 Score=29.13 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=39.1
Q ss_pred EEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 81 FVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 81 ~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvA-nD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+|| +.-|.|+...++++.|... ...|++ .+.+..+...+...+...+. .+.+...|...
T Consensus 3 ~vl-VTGasggiG~~la~~l~~~-------G~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 62 (244)
T 1edo_A 3 VVV-VTGASRGIGKAIALSLGKA-------GCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSK 62 (244)
T ss_dssp EEE-ETTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTS
T ss_pred EEE-EeCCCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEeCCCCC
Confidence 455 4556788888888888652 346777 47888888777776665543 45556666544
No 451
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=40.62 E-value=2.3e+02 Score=27.70 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=41.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-.+++..|... ...|++++.+..++..+...+...+. .+.+...|...
T Consensus 9 ~k~vlVTG-as~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 69 (260)
T 2ae2_A 9 GCTALVTG-GSRGIGYGIVEELASL-------GASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSS 69 (260)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 56677555 5677778888877652 35799999999988877766655542 45555566544
No 452
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=40.55 E-value=87 Score=31.34 Aligned_cols=62 Identities=2% Similarity=-0.036 Sum_probs=42.1
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... ...|++.+.+..++..+...+.......+.+...|...
T Consensus 26 ~k~vlITG-asggiG~~la~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~ 87 (302)
T 1w6u_A 26 GKVAFITG-GGTGLGKGMTTLLSSL-------GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD 87 (302)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC
Confidence 56676555 5677788888887652 35799999999888777666654412346666666554
No 453
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=40.16 E-value=51 Score=32.65 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=26.7
Q ss_pred CCEEEeecCCc-chHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH
Q 004787 79 DHFVLDMCAAP-GSKTFQLLEIIHQSTNPGALPNGMVIANDLDV 121 (730)
Q Consensus 79 g~~VLDmCAAP-GsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~ 121 (730)
+.+||=.+|+. |+.-.+++..|... ...|++++.+.
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~-------G~~V~~~~r~~ 45 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHRE-------GAELAFTYQND 45 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHT-------TCEEEEEESST
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC-------CCEEEEEcCcH
Confidence 56788777653 77888888887652 35789999887
No 454
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=40.11 E-value=1.8e+02 Score=29.37 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=42.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcC-CCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg-~~nv~vt~~Da~~ 148 (730)
|.+||=.+| .|+.-..++..|.... ...-.|+..+.+..++..+...+.... -..+.+...|...
T Consensus 33 ~k~~lVTGa-s~GIG~aia~~l~~~G----~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d 98 (287)
T 3rku_A 33 KKTVLITGA-SAGIGKATALEYLEAS----NGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ 98 (287)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC
T ss_pred CCEEEEecC-CChHHHHHHHHHHHcC----CCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 567776665 4666777777664310 001289999999999988888776543 2356666777655
No 455
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=39.90 E-value=1.2e+02 Score=29.55 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=43.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.++++.|... ...|++.|.+..++..+.+.++..+. .+.+...|...
T Consensus 9 ~k~vlITG-as~giG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 69 (253)
T 3qiv_A 9 NKVGIVTG-SGGGIGQAYAEALARE-------GAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSD 69 (253)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTS
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 55666555 5577778888887653 35799999999999988888776553 45566666554
No 456
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=39.61 E-value=91 Score=30.87 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=43.7
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.|.+||=.+| .|+.-..++..|... ...|+.+|.+..++..+...+...+. .+.+...|...
T Consensus 10 ~~k~vlVTGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 71 (264)
T 3ucx_A 10 TDKVVVISGV-GPALGTTLARRCAEQ-------GADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITD 71 (264)
T ss_dssp TTCEEEEESC-CTTHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCcEEEEECC-CcHHHHHHHHHHHHC-------cCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 3667776665 456677777777652 35799999999999988888876653 45666666554
No 457
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=39.47 E-value=1.5e+02 Score=29.55 Aligned_cols=62 Identities=5% Similarity=-0.026 Sum_probs=43.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~--nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+.-.++++.|... ...|+.+|.+..++..+...++..+.. .+.+...|...
T Consensus 11 ~k~vlVTGa-s~gIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~ 74 (281)
T 3svt_A 11 DRTYLVTGG-GSGIGKGVAAGLVAA-------GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN 74 (281)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC
Confidence 556666554 566777888877652 357999999999998888887766543 45666666554
No 458
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=38.92 E-value=93 Score=33.19 Aligned_cols=95 Identities=18% Similarity=0.001 Sum_probs=61.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEE-EeCCHHHHHHHHHHHHHcCCCc--eEEEecccccCCCccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIA-NDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRA 154 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvA-nD~d~~Rl~~L~~nlkRlg~~n--v~vt~~Da~~fp~~~~ 154 (730)
++.+||.+..+=|.-|+.++.. .++. .| +.-....+.+|+.++++.. +.+...-.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~-------------~~~~~~d-s~~~~~~~~~n~~~~~~~~~~~~~~~~~~-------- 95 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH-------------KPYSIGD-SYISELATRENLRLNGIDESSVKFLDSTA-------- 95 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG-------------CCEEEES-CHHHHHHHHHHHHHTTCCGGGSEEEETTS--------
T ss_pred CCCCEEEECCCCCHHHHhhccC-------------CceEEEh-HHHHHHHHHHHHHHcCCCccceEeccccc--------
Confidence 4467999999999988877531 1223 35 5556678889999988754 33322100
Q ss_pred CCCCCCCCccccccccccccccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEE
Q 004787 155 NKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 234 (730)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYS 234 (730)
.....||.|++-.| ..+..+ ...|.+.+..|++|++|+-.
T Consensus 96 -----------------~~~~~~~~v~~~lp----------------------k~~~~l-~~~L~~l~~~l~~~~~i~~~ 135 (375)
T 4dcm_A 96 -----------------DYPQQPGVVLIKVP----------------------KTLALL-EQQLRALRKVVTSDTRIIAG 135 (375)
T ss_dssp -----------------CCCSSCSEEEEECC----------------------SCHHHH-HHHHHHHHTTCCTTSEEEEE
T ss_pred -----------------ccccCCCEEEEEcC----------------------CCHHHH-HHHHHHHHhhCCCCCEEEEE
Confidence 11257999998666 112222 44677888899999998643
No 459
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=38.61 E-value=1.1e+02 Score=33.71 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=68.4
Q ss_pred ecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH------------HHc-CCCceEEEecccccCCC
Q 004787 85 MCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT------------KRM-CTANLIVTNHEAQHFPG 151 (730)
Q Consensus 85 mCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl------------kRl-g~~nv~vt~~Da~~fp~ 151 (730)
..-|.|..-+.+|..|... .-.|++.|+++.++..+.... ++. ...++.++.. .
T Consensus 12 ~vIGlG~vG~~~A~~La~~-------G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd-~----- 78 (446)
T 4a7p_A 12 AMIGTGYVGLVSGACFSDF-------GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTD-L----- 78 (446)
T ss_dssp EEECCSHHHHHHHHHHHHT-------TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESC-H-----
T ss_pred EEEcCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECC-H-----
Confidence 4557888888888877652 247999999999998775420 000 0012222211 0
Q ss_pred cccCCCCCCCCccccccccccccccccEEEecCCCCC---CCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCC
Q 004787 152 CRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG---DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVG 228 (730)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSG---dGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpG 228 (730)
...-...|.|++=+|-.. +| .||+ ..+ ...+......|++|
T Consensus 79 -------------------~ea~~~aDvvii~Vptp~~~~~~----~~Dl------------~~v-~~v~~~i~~~l~~g 122 (446)
T 4a7p_A 79 -------------------AEGVKDADAVFIAVGTPSRRGDG----HADL------------SYV-FAAAREIAENLTKP 122 (446)
T ss_dssp -------------------HHHHTTCSEEEECCCCCBCTTTC----CBCT------------HHH-HHHHHHHHHSCCSC
T ss_pred -------------------HHHHhcCCEEEEEcCCCCccccC----CccH------------HHH-HHHHHHHHHhcCCC
Confidence 000134688888665332 22 2332 111 23445566788998
Q ss_pred CEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 229 GRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 229 GrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
..+|+.+ |+.|.-.+.+...+.+.
T Consensus 123 ~iVV~~S-Tv~pgtt~~l~~~l~e~ 146 (446)
T 4a7p_A 123 SVIVTKS-TVPVGTGDEVERIIAEV 146 (446)
T ss_dssp CEEEECS-CCCTTHHHHHHHHHHHH
T ss_pred CEEEEeC-CCCchHHHHHHHHHHHh
Confidence 7777754 78888888886655544
No 460
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=38.57 E-value=83 Score=31.41 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=41.3
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-------------CHHHHHHHHHHHHHcCCCceEEEec
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-------------DVQRCNLLIHQTKRMCTANLIVTNH 144 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-------------d~~Rl~~L~~nlkRlg~~nv~vt~~ 144 (730)
.|.+||=.+| .|+.-.+++..|... ...|+++|. +..++..+.+.+...+. .+.+...
T Consensus 14 ~gk~~lVTGa-s~gIG~a~a~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (280)
T 3pgx_A 14 QGRVAFITGA-ARGQGRSHAVRLAAE-------GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVL 84 (280)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEEC
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEc
Confidence 3566776665 466777888877652 357999998 67888877777665553 4555556
Q ss_pred cccc
Q 004787 145 EAQH 148 (730)
Q Consensus 145 Da~~ 148 (730)
|...
T Consensus 85 Dv~~ 88 (280)
T 3pgx_A 85 DVRD 88 (280)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6554
No 461
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=38.53 E-value=1.6e+02 Score=29.81 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=41.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEeccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD------------VQRCNLLIHQTKRMCTANLIVTNHEA 146 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d------------~~Rl~~L~~nlkRlg~~nv~vt~~Da 146 (730)
|.+||=.+|+ |+.-..++..|... ...|+++|.+ ..++..+...+...+. .+.+...|.
T Consensus 28 gk~~lVTGas-~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv 98 (299)
T 3t7c_A 28 GKVAFITGAA-RGQGRSHAITLARE-------GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDV 98 (299)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHT-------TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCT
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHC-------CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCC
Confidence 5667766654 56677777777652 4579999987 7777777777766653 466666666
Q ss_pred cc
Q 004787 147 QH 148 (730)
Q Consensus 147 ~~ 148 (730)
..
T Consensus 99 ~~ 100 (299)
T 3t7c_A 99 RD 100 (299)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 462
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=38.43 E-value=3.1e+02 Score=27.30 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=41.8
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-eccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVT-NHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt-~~Da~~ 148 (730)
.+.+||=.+ |.|....++++.|... .-.|++++.+..+...+...+......++.+. ..|...
T Consensus 10 ~~~~vlVTG-atG~iG~~l~~~L~~~-------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 73 (342)
T 1y1p_A 10 EGSLVLVTG-ANGFVASHVVEQLLEH-------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK 73 (342)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHC-------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC
Confidence 467888555 5688888888887652 34799999998877666554433222456665 566554
No 463
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=38.41 E-value=1.3e+02 Score=30.11 Aligned_cols=62 Identities=2% Similarity=0.097 Sum_probs=41.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+.-.+++..|... ...|+.+|. +..++..+...+.......+.+...|...
T Consensus 25 ~k~~lVTGa-s~GIG~~ia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 87 (281)
T 3v2h_A 25 TKTAVITGS-TSGIGLAIARTLAKA-------GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK 87 (281)
T ss_dssp TCEEEEETC-SSHHHHHHHHHHHHT-------TCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC-------CCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC
Confidence 556665554 566777888877652 357999998 67777777776665544456666666554
No 464
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=38.07 E-value=2e+02 Score=28.40 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=43.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+....++..|... ...|+++|.+..++..+...++..+. .+.+...|...
T Consensus 31 ~k~vlITG-asggIG~~la~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 91 (272)
T 1yb1_A 31 GEIVLITG-AGHGIGRLTAYEFAKL-------KSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSN 91 (272)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCC
Confidence 55666555 5677888888887652 35799999999988887777766553 46666666554
No 465
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=38.02 E-value=1.4e+02 Score=29.72 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=68.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHH-HHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR-CNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~R-l~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|.+||=.+ |.|+.-.+++..|... ...|++++.+... ...+...+...+. .+.+...|......+. .
T Consensus 29 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~--~- 96 (283)
T 1g0o_A 29 GKVALVTG-AGRGIGREMAMELGRR-------GCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIV--R- 96 (283)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHH--H-
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHH--H-
Confidence 55666555 5677888888888652 3578888887643 4555555555543 3555555544321110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
...........+|.|+..+--...+.+. ..++.|... -..++ .-...+++.++..++.+|+||+.+
T Consensus 97 --------~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~---~~~N~-~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 97 --------MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRV---FTINT-RGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp --------HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHH---HHHHT-HHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred --------HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHH---HHHhh-HHHHHHHHHHHHHHhcCCeEEEEe
Confidence 0000001124689888855332222221 122333221 11111 122445667777777789999864
No 466
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=38.01 E-value=1.2e+02 Score=30.19 Aligned_cols=61 Identities=5% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQT-KRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nl-kRlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |.|+.-.++++.|... ...|++++.+..++..+...+ ...+. .+.+...|...
T Consensus 21 ~k~~lVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~ 82 (267)
T 1vl8_A 21 GRVALVTG-GSRGLGFGIAQGLAEA-------GCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSN 82 (267)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 55666555 5677788888887652 357999999998887776666 33443 45555556544
No 467
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=37.97 E-value=95 Score=31.03 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+| .|+.-..+++.|... ...|+..+.+..++..+...+....-..+.+...|...
T Consensus 27 ~k~~lVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 88 (277)
T 4fc7_A 27 DKVAFITGG-GSGIGFRIAEIFMRH-------GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA 88 (277)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHTT-------TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 566775554 567778888887652 35899999999888777766654322356666666554
No 468
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=37.48 E-value=1.6e+02 Score=29.47 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=42.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-..+++.|... ...|+..+.+..++..+...++..+. .+.+...|...
T Consensus 4 ~k~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 64 (264)
T 3tfo_A 4 DKVILITG-ASGGIGEGIARELGVA-------GAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTD 64 (264)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 44566555 4566777888877652 35799999999999988888776653 45555556544
No 469
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=37.31 E-value=1.9e+02 Score=28.07 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=40.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||= .-|.|+.-..+++.|... ...|++.+. +..++..+...+...+. .+.+...|...
T Consensus 4 ~k~vlV-TGas~giG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (246)
T 2uvd_A 4 GKVALV-TGASRGIGRAIAIDLAKQ-------GANVVVNYAGNEQKANEVVDEIKKLGS-DAIAVRADVAN 65 (246)
T ss_dssp TCEEEE-TTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTC
T ss_pred CCEEEE-ECCCcHHHHHHHHHHHHC-------CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 455664 445677888888887652 357899998 88888777776665543 45555566544
No 470
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=37.14 E-value=1.1e+02 Score=30.21 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=38.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.+++..|... ...|+.+|.+..++..+...+ + ..+.+...|...
T Consensus 8 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~ 65 (259)
T 4e6p_A 8 GKSALITG-SARGIGRAFAEAYVRE-------GATVAIADIDIERARQAAAEI---G-PAAYAVQMDVTR 65 (259)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCC
Confidence 56677555 5577788888877652 357999999998877665543 3 245555666554
No 471
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=37.01 E-value=95 Score=30.51 Aligned_cols=59 Identities=7% Similarity=0.078 Sum_probs=38.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~-~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...++++.|... ...|++.+.+..+...+...+ +. .++.+...|...
T Consensus 16 ~k~vlITG-asggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~ 75 (278)
T 2bgk_A 16 DKVAIITG-GAGGIGETTAKLFVRY-------GAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTK 75 (278)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHH---CCTTTEEEEECCTTC
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEcCChhHHHHHHHHh---CCCCceEEEECCCCC
Confidence 56777555 5677888888887652 357999999988766554433 22 256666666554
No 472
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=36.84 E-value=54 Score=35.01 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.1
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHH
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIH 129 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~ 129 (730)
+|.+|+=+++ |.....+++.+... ...|++.|.+..|+..+..
T Consensus 167 ~g~~V~ViG~--G~iG~~~a~~a~~~-------Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 167 EPADVVVIGA--GTAGYNAARIANGM-------GATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHH
Confidence 4789999987 55656666666542 2389999999999876643
No 473
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=36.69 E-value=94 Score=31.13 Aligned_cols=61 Identities=3% Similarity=-0.014 Sum_probs=42.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+| .|+.-..++..|... ...|++++.+..++..+...++..+. .+.+...|...
T Consensus 24 ~k~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 84 (279)
T 3sju_A 24 PQTAFVTGV-SSGIGLAVARTLAAR-------GIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTS 84 (279)
T ss_dssp -CEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTC
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCC
Confidence 556776664 566777788777652 35799999999998888877765543 45666666554
No 474
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=36.51 E-value=1.9e+02 Score=29.09 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=41.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe-CCHHHHHHHHHHHH-HcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND-LDVQRCNLLIHQTK-RMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD-~d~~Rl~~L~~nlk-Rlg~~nv~vt~~Da~~ 148 (730)
+..||=.+ |.|+.-..++..|... ...|+.++ .+..++..+...+. ..+ .++.+...|...
T Consensus 9 ~k~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~ 71 (291)
T 1e7w_A 9 VPVALVTG-AAKRLGRSIAEGLHAE-------GYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSN 71 (291)
T ss_dssp CCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSS
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCeEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCC
Confidence 45666555 5567788888887652 35799999 99988887777665 444 346666666655
No 475
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=36.28 E-value=1.2e+02 Score=30.38 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=39.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCC----------------HHHHHHHHHHHHHcCCCceEEE
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLD----------------VQRCNLLIHQTKRMCTANLIVT 142 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d----------------~~Rl~~L~~nlkRlg~~nv~vt 142 (730)
|.+||=.+| .|+.-..++..|... ...|+++|.+ ..++..+...+...+ ..+.+.
T Consensus 11 ~k~~lVTGa-s~gIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (286)
T 3uve_A 11 GKVAFVTGA-ARGQGRSHAVRLAQE-------GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTA 81 (286)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC-------CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEE
Confidence 556665555 466777788877652 3579999887 677776666665444 346666
Q ss_pred eccccc
Q 004787 143 NHEAQH 148 (730)
Q Consensus 143 ~~Da~~ 148 (730)
..|...
T Consensus 82 ~~Dv~~ 87 (286)
T 3uve_A 82 EVDVRD 87 (286)
T ss_dssp ECCTTC
T ss_pred EcCCCC
Confidence 666554
No 476
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=36.20 E-value=1.2e+02 Score=30.29 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-------------CHHHHHHHHHHHHHcCCCceEEEecc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-------------DVQRCNLLIHQTKRMCTANLIVTNHE 145 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-------------d~~Rl~~L~~nlkRlg~~nv~vt~~D 145 (730)
|.+||=.+| .|+.-.+++..|... ...|+++|. +..++..+...+...+. .+.+...|
T Consensus 11 ~k~~lVTGa-s~GIG~a~a~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 81 (277)
T 3tsc_A 11 GRVAFITGA-ARGQGRAHAVRMAAE-------GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVD 81 (277)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHT-------TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred CCEEEEECC-ccHHHHHHHHHHHHc-------CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECC
Confidence 556665554 566677777777652 358999998 67777777666665553 45666666
Q ss_pred ccc
Q 004787 146 AQH 148 (730)
Q Consensus 146 a~~ 148 (730)
...
T Consensus 82 ~~~ 84 (277)
T 3tsc_A 82 TRD 84 (277)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 477
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=36.08 E-value=1.3e+02 Score=30.21 Aligned_cols=61 Identities=7% Similarity=-0.049 Sum_probs=42.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-..++..|... ...|+..|.+..++..+...+...+ ..+.+...|...
T Consensus 33 gk~~lVTG-as~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~ 93 (275)
T 4imr_A 33 GRTALVTG-SSRGIGAAIAEGLAGA-------GAHVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSE 93 (275)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTS
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCC
Confidence 55666555 5567778888877652 3589999999988888877776655 345666666654
No 478
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=35.99 E-value=1.6e+02 Score=28.66 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... ...|++++. +..++..+...++..+ ..+.+...|...
T Consensus 7 ~k~vlITG-asggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 68 (261)
T 1gee_A 7 GKVVVITG-SSTGLGKSMAIRFATE-------KAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTV 68 (261)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTS
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHC-------CCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 55666544 5677888888877652 357999999 8888777776666554 345566666554
No 479
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=35.87 E-value=1.3e+02 Score=26.76 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=36.2
Q ss_pred CEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 80 HFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 80 ~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
++|+=+++ |.....+++.|... .-.|+++|.++.++..+.. .| +.+..+|+..
T Consensus 8 ~~viIiG~--G~~G~~la~~L~~~-------g~~v~vid~~~~~~~~~~~----~g---~~~i~gd~~~ 60 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGEKLLAS-------DIPLVVIETSRTRVDELRE----RG---VRAVLGNAAN 60 (140)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHT-------TCCEEEEESCHHHHHHHHH----TT---CEEEESCTTS
T ss_pred CCEEEECc--CHHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHH----cC---CCEEECCCCC
Confidence 45655554 67777888888652 3479999999999886653 33 4556677654
No 480
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=35.45 E-value=1.5e+02 Score=28.76 Aligned_cols=133 Identities=10% Similarity=0.058 Sum_probs=68.5
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeC-CHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL-DVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~-d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||= .-|.|+.-.+++..|... ...|+.++. +..++..+...++..+. .+.+...|......+. .
T Consensus 4 ~k~~lV-TGas~gIG~~ia~~l~~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~--~- 71 (246)
T 3osu_A 4 TKSALV-TGASRGIGRSIALQLAEE-------GYNVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVK--A- 71 (246)
T ss_dssp SCEEEE-TTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHH--H-
T ss_pred CCEEEE-ECCCChHHHHHHHHHHHC-------CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHH--H-
Confidence 345554 445677778888877652 346777776 66788877777776654 3555566655422110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhc--cCCCEEEEE
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLL--KVGGRIVYS 234 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lL--KpGGrLVYS 234 (730)
............|.++..+--+..+.+.. .++.|..--. .++. -...+++.++..+ +.+|+||+.
T Consensus 72 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~---vN~~-g~~~~~~~~~~~~~~~~~g~iv~i 139 (246)
T 3osu_A 72 --------MIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVID---TNLK-GVFNCIQKATPQMLRQRSGAIINL 139 (246)
T ss_dssp --------HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHH---HHTH-HHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHH---HhhH-HHHHHHHHHHHHHHHcCCCEEEEE
Confidence 00000111246899988665444333322 2333432111 1111 1223455555544 356888885
Q ss_pred c
Q 004787 235 T 235 (730)
Q Consensus 235 T 235 (730)
+
T Consensus 140 s 140 (246)
T 3osu_A 140 S 140 (246)
T ss_dssp C
T ss_pred c
Confidence 3
No 481
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=35.03 E-value=1.9e+02 Score=28.16 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=41.4
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||= .-|.|+...++++.|... ...|++++.+..++..+...+...+. .+.+...|...
T Consensus 14 ~k~vlI-TGasggiG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 74 (266)
T 1xq1_A 14 AKTVLV-TGGTKGIGHAIVEEFAGF-------GAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASL 74 (266)
T ss_dssp TCEEEE-TTTTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTS
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCC
Confidence 556664 445677888888887652 35799999999888777766655543 45555566544
No 482
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=34.73 E-value=43 Score=33.36 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCCEEEeecC-CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHH
Q 004787 78 PDHFVLDMCA-APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQR 123 (730)
Q Consensus 78 pg~~VLDmCA-APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~R 123 (730)
.+.+||=.+| |.|+.-..++..|... ...|+.+|.+..+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~-------G~~V~~~~r~~~~ 45 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQ-------GAQLVLTGFDRLR 45 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT-------TCEEEEEECSCHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHC-------CCEEEEEecChHH
Confidence 3667887787 4888888888888753 3579999988765
No 483
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=34.70 E-value=26 Score=46.88 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=33.2
Q ss_pred CCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHH
Q 004787 75 DVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130 (730)
Q Consensus 75 d~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~n 130 (730)
.+++|++||=.+| |-|.-++|+|..++ ..|++.+.+.++...++..
T Consensus 1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~G----------a~Viat~~s~~k~~~l~~~ 1711 (2512)
T 2vz8_A 1664 RMQPGESVLIHSGSGGVGQAAIAIALSRG----------CRVFTTVGSAEKRAYLQAR 1711 (2512)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCChHHHHHHHHHHHHcC----------CEEEEEeCChhhhHHHHhh
Confidence 5789999998754 34455666666542 4799999998888777553
No 484
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=34.57 E-value=1.4e+02 Score=29.95 Aligned_cols=130 Identities=8% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNF 158 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~~ 158 (730)
+.+||=.+| .|+.-.+++..|... ...|+..|.+..++..+... ++. .+.+...|......+. .
T Consensus 27 ~k~vlVTGa-s~GIG~aia~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~Dv~d~~~v~--~-- 90 (277)
T 4dqx_A 27 QRVCIVTGG-GSGIGRATAELFAKN-------GAYVVVADVNEDAAVRVANE---IGS-KAFGVRVDVSSAKDAE--S-- 90 (277)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHH---HCT-TEEEEECCTTCHHHHH--H--
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHH--H--
Confidence 556665554 566778888877652 35899999998887766554 332 3555555654421110 0
Q ss_pred CCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccC--CCEEEEEc
Q 004787 159 SSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKV--GGRIVYST 235 (730)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKp--GGrLVYST 235 (730)
............|.++..+--...+.+.. .++.|..- -..++. -...+++.++..++. +|+||+.+
T Consensus 91 -------~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~---~~vN~~-g~~~~~~~~~~~~~~~~~g~iv~is 159 (277)
T 4dqx_A 91 -------MVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRI---MSVNVK-GIFLCSKYVIPVMRRNGGGSIINTT 159 (277)
T ss_dssp -------HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHH---HHHHTH-HHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred -------HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHH---HHHhhH-HHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 00000111246899988654333333222 22333321 111111 123455566666543 57888764
No 485
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=34.54 E-value=1.8e+02 Score=29.10 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=42.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl----g~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+...+++..|... ...|++++.+..++..+...+... ....+.+...|...
T Consensus 18 ~k~vlVTG-asggIG~~la~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T 1yxm_A 18 GQVAIVTG-GATGIGKAIVKELLEL-------GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN 83 (303)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC
Confidence 56777555 5677888888887652 357999999998888777766552 12346666666554
No 486
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=34.26 E-value=44 Score=35.92 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=32.2
Q ss_pred ccccEEEecCCCCCCCccccChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcCCCCCCCcHHHHHHHHHH
Q 004787 175 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253 (730)
Q Consensus 175 ~~FDrVL~DvPCSGdGtlrk~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTCSl~p~ENEaVV~~~L~~ 253 (730)
..||.||+-+| + .. .+. +-...|.++...|++||+|+-.- +|...+..+++.
T Consensus 100 ~~~d~v~~~~P---------------k---~k--~~~-~~~~~l~~~~~~l~~g~~i~~~g------~~~~g~~~~~~~ 151 (381)
T 3dmg_A 100 GAYDLVVLALP---------------A---GR--GTA-YVQASLVAAARALRMGGRLYLAG------DKNKGFERYFKE 151 (381)
T ss_dssp TCEEEEEEECC---------------G---GG--CHH-HHHHHHHHHHHHEEEEEEEEEEE------EGGGTHHHHHHH
T ss_pred CCCCEEEEECC---------------c---ch--hHH-HHHHHHHHHHHhCCCCCEEEEEE------ccHHHHHHHHHH
Confidence 67999999777 0 01 111 22346778888999999987542 334455555543
No 487
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=34.02 E-value=85 Score=31.35 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=70.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAn-D~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
+.+||=.+| .|+.-..++..|... ...|+.+ ..+..++..+...+...+. .+.+...|......+. .
T Consensus 27 ~k~~lVTGa-s~GIG~aia~~la~~-------G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~--~- 94 (267)
T 3u5t_A 27 NKVAIVTGA-SRGIGAAIAARLASD-------GFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVR--R- 94 (267)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHH-------TCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHH--H-
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHH--H-
Confidence 556665554 556677777776542 2356665 5577777777777766653 4555566655421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCCCCCcccc-ChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEcC
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRK-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 236 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCSGdGtlrk-~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYSTC 236 (730)
............|.++..+--...+.+.. .++.|.+- -..++ .-...+++.++..++.+|+||+.+.
T Consensus 95 --------~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~---~~vN~-~g~~~~~~~~~~~~~~~g~iv~isS 162 (267)
T 3u5t_A 95 --------LFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRV---IAVNL-KGTFNTLREAAQRLRVGGRIINMST 162 (267)
T ss_dssp --------HHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHH---HHHHH-HHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred --------HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHH---HHHHH-HHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 00000111246898888654333333222 22233321 11111 1224567778888888899998753
No 488
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=33.94 E-value=81 Score=31.21 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=70.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEecccccCCCcccCCC
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKN 157 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAn-D~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~fp~~~~~~~ 157 (730)
|.+||=.+| .|+.-.++++.|... ...|+.. +.+..+...+...++..+. .+.+...|......+. .
T Consensus 8 ~k~vlVTGa-s~GIG~aia~~la~~-------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~--~- 75 (259)
T 3edm_A 8 NRTIVVAGA-GRDIGRACAIRFAQE-------GANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVE--A- 75 (259)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHT-------TCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHH--H-
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHH--H-
Confidence 556665554 566777788777652 3466666 7788887777777765553 4555566655421110 0
Q ss_pred CCCCCccccccccccccccccEEEecCCCC-CCCccc-cChhhhhhcccccccchHHHHHHHHHHHHhhccCCCEEEEEc
Q 004787 158 FSSASDKGIESESNMGQLLFDRVLCDVPCS-GDGTLR-KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 235 (730)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~FDrVL~DvPCS-GdGtlr-k~pd~~~~w~~~~~~~L~~lQ~~IL~rAl~lLKpGGrLVYST 235 (730)
............|.++..+--. ..+.+. ..++.|..- -..++ .-...+++.++..++.+|+||+.+
T Consensus 76 --------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~---~~vN~-~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 76 --------AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQV---LDVNL-TSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp --------HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHH---HHHHT-HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --------HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHH---HHHHH-HHHHHHHHHHHHHHhcCCEEEEEc
Confidence 0000011124688888755211 112221 123333321 11111 123456777788888789998864
Q ss_pred C
Q 004787 236 C 236 (730)
Q Consensus 236 C 236 (730)
.
T Consensus 144 S 144 (259)
T 3edm_A 144 S 144 (259)
T ss_dssp C
T ss_pred C
Confidence 3
No 489
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=33.92 E-value=1.1e+02 Score=30.78 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=41.9
Q ss_pred CCCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 78 PDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 78 pg~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
.+..||=.+| .|+.-..++..|... ...|+.+|.+..++..+...+...+. .+.+...|...
T Consensus 27 ~~k~~lVTGa-s~GIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 88 (283)
T 3v8b_A 27 PSPVALITGA-GSGIGRATALALAAD-------GVTVGALGRTRTEVEEVADEIVGAGG-QAIALEADVSD 88 (283)
T ss_dssp CCCEEEEESC-SSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHTTTTC-CEEEEECCTTC
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCC
Confidence 3556776554 566777788777652 35899999999998887776654442 45566666554
No 490
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=33.85 E-value=1.3e+02 Score=29.76 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=40.7
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEE-eCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAN-DLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAn-D~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.++++.|... ...|+.. +.+..++..+...++..+. .+.+...|...
T Consensus 4 ~k~vlVTG-as~gIG~aia~~l~~~-------G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 65 (258)
T 3oid_A 4 NKCALVTG-SSRGVGKAAAIRLAEN-------GYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQ 65 (258)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTC
T ss_pred CCEEEEec-CCchHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCC
Confidence 45566545 5577778888887652 3456665 8898888888777766553 45666666554
No 491
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=33.79 E-value=1.9e+02 Score=29.15 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=41.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-..++..|... ...|++++.+..++..+...+...+. .+.+...|...
T Consensus 34 ~k~vlVTG-as~gIG~aia~~L~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 94 (291)
T 3cxt_A 34 GKIALVTG-ASYGIGFAIASAYAKA-------GATIVFNDINQELVDRGMAAYKAAGI-NAHGYVCDVTD 94 (291)
T ss_dssp TCEEEEET-CSSHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEecCCC
Confidence 55666555 5577778888877652 35799999999888877776665553 34555556544
No 492
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=33.71 E-value=1.9e+02 Score=28.81 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=42.6
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-..+++.|... ...|+.+|.+..++..+...++..+. .+.+...|...
T Consensus 26 gk~~lVTG-as~gIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d 86 (271)
T 4ibo_A 26 GRTALVTG-SSRGLGRAMAEGLAVA-------GARILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTS 86 (271)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHT-------TCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 55666555 5567778888877652 35899999999999888887776653 45555555544
No 493
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}
Probab=33.30 E-value=16 Score=43.40 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.5
Q ss_pred cCCCCCCEEEeecC--CcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHH
Q 004787 74 LDVQPDHFVLDMCA--APGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQ 122 (730)
Q Consensus 74 Ld~~pg~~VLDmCA--APGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~ 122 (730)
..+++|++||=.+| |-|.-++|+|..++ ..|++.+.+.+
T Consensus 341 a~l~~G~~VLI~gaaGgvG~~aiqlAk~~G----------a~V~~t~~~~k 381 (795)
T 3slk_A 341 AGLRPGESLLVHSAAGGVGMAAIQLARHLG----------AEVYATASEDK 381 (795)
T ss_dssp TCCCTTCCEEEESTTBHHHHHHHHHHHHTT----------CCEEEECCGGG
T ss_pred hCCCCCCEEEEecCCCHHHHHHHHHHHHcC----------CEEEEEeChHH
Confidence 46899999998875 34666778877653 36888886664
No 494
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=33.22 E-value=2.2e+02 Score=27.87 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=41.3
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-..++..|... ...|+.++.+..++..+...+...+. .+.+...|...
T Consensus 7 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 67 (262)
T 1zem_A 7 GKVCLVTG-AGGNIGLATALRLAEE-------GTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTS 67 (262)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTC
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 55666555 5677788888877652 35799999999888877766655442 45556666544
No 495
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=32.98 E-value=88 Score=31.01 Aligned_cols=62 Identities=6% Similarity=-0.026 Sum_probs=39.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~--~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.+++..|... ...|++++.+..++..+...+..... .++.+...|...
T Consensus 6 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (278)
T 1spx_A 6 EKVAIITG-SSNGIGRATAVLFARE-------GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT 69 (278)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC
Confidence 44566544 5577788888877652 35799999999888777666532221 245556566544
No 496
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=32.90 E-value=1.3e+02 Score=30.13 Aligned_cols=58 Identities=7% Similarity=0.067 Sum_probs=38.0
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
|.+||=.+ |.|+.-..++..|... ...|+.+|.+..++..+...+ + ..+.+...|...
T Consensus 29 gk~vlVTG-as~gIG~aia~~la~~-------G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d 86 (277)
T 3gvc_A 29 GKVAIVTG-AGAGIGLAVARRLADE-------GCHVLCADIDGDAADAAATKI---G-CGAAACRVDVSD 86 (277)
T ss_dssp TCEEEETT-TTSTHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHH---C-SSCEEEECCTTC
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC-------CCEEEEEeCCHHHHHHHHHHc---C-CcceEEEecCCC
Confidence 55666555 4566777777777652 358999999998887665544 3 234555556544
No 497
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=32.74 E-value=1.6e+02 Score=28.12 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRlg~~nv~vt~~Da~~ 148 (730)
+.+|| +.-|.|+...++++.|... .-.|++++.+..++..+... +. ++.+...|...
T Consensus 5 ~k~vl-VtGasggiG~~~a~~l~~~-------G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~D~~~ 61 (234)
T 2ehd_A 5 KGAVL-ITGASRGIGEATARLLHAK-------GYRVGLMARDEKRLQALAAE---LE--GALPLPGDVRE 61 (234)
T ss_dssp CCEEE-ESSTTSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHH---ST--TCEEEECCTTC
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHH---hh--hceEEEecCCC
Confidence 34566 4556788888888887652 34799999998877655433 22 45555556544
No 498
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=32.67 E-value=1.8e+02 Score=29.88 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=42.2
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEe-CCHHHHHHHHHHHH-HcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIAND-LDVQRCNLLIHQTK-RMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD-~d~~Rl~~L~~nlk-Rlg~~nv~vt~~Da~~ 148 (730)
+..||= .-|.|+.-..+++.|... ...|++++ .+..++..+...+. ..+ .++.+...|...
T Consensus 46 ~k~~lV-TGas~GIG~aia~~La~~-------G~~Vv~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~d 108 (328)
T 2qhx_A 46 VPVALV-TGAAKRLGRSIAEGLHAE-------GYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSN 108 (328)
T ss_dssp CCEEEE-TTCSSHHHHHHHHHHHHT-------TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSS
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHC-------CCEEEEEcCCCHHHHHHHHHHHHhhcC-CeEEEEEeeCCC
Confidence 456664 445677888888888652 35799999 99998888777665 444 346666666655
No 499
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=32.29 E-value=1.2e+02 Score=30.41 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=39.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCH-HHHHHHHHHHH-HcCCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDV-QRCNLLIHQTK-RMCTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~-~Rl~~L~~nlk-Rlg~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-..++..|... ...|++++.+. .++..+...+. ..+ ..+.+...|...
T Consensus 23 ~k~~lVTG-as~gIG~aia~~L~~~-------G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~ 85 (288)
T 2x9g_A 23 APAAVVTG-AAKRIGRAIAVKLHQT-------GYRVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTN 85 (288)
T ss_dssp CCEEEETT-CSSHHHHHHHHHHHHH-------TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSC
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHC-------CCeEEEEeCCchHHHHHHHHHHHhhcC-CceEEEEeecCC
Confidence 55666555 4567777788777642 35799999988 77777766665 334 346666666554
No 500
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=31.97 E-value=2.4e+02 Score=27.58 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=40.8
Q ss_pred CCEEEeecCCcchHHHHHHHHHhcCCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHc-CCCceEEEeccccc
Q 004787 79 DHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRM-CTANLIVTNHEAQH 148 (730)
Q Consensus 79 g~~VLDmCAAPGsKT~qLae~L~~~~~~~~~p~G~VvAnD~d~~Rl~~L~~nlkRl-g~~nv~vt~~Da~~ 148 (730)
+.+||=.+ |.|+.-.+++..|... ...|++++.+..++..+...+... + .++.+...|...
T Consensus 7 ~k~vlVTG-as~gIG~~ia~~l~~~-------G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~ 68 (263)
T 3ai3_A 7 GKVAVITG-SSSGIGLAIAEGFAKE-------GAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVAT 68 (263)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHT-------TCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTS
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC-------CCEEEEEcCCHHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 55666555 5577788888877652 347999999998887776666543 4 345566666544
Done!