RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004787
(730 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 104 bits (259), Expect = 4e-25
Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 50/291 (17%)
Query: 16 PIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVPPLFLD 75
+ +PW + + F I QEA SM PP+ LD
Sbjct: 67 QFKRVPWAKEGFCLTREPFSIT-----STPEFLTG--------LIYIQEASSMYPPVALD 113
Query: 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMC 135
+P V DM AAPG KT L +++ +G++ A D+D R R+
Sbjct: 114 PKPGEIVADMAAAPGGKTSYLAQLMRN--------DGVIYAFDVDENRLRETRLNLSRLG 165
Query: 136 TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKA 195
N+I+ + + H FD++L D PC+G GT+ K
Sbjct: 166 VLNVILFHSSSLHIGELNVE---------------------FDKILLDAPCTGSGTIHKN 204
Query: 196 PDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 255
P+ + LQ+++ +G+ +LK GG +VYSTCS+ P ENE V+ L +
Sbjct: 205 PERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD 264
Query: 256 GSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH------VRKFRRI 300
VEL+ + P L + G+ + L H + K R++
Sbjct: 265 --VELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 313
Score = 42.3 bits (98), Expect = 1e-04
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 326 VTDVNSDEGLQQVEDVLTSAD----DLEEEVSDLP----------LERCMRLVPHDQNSG 371
+ +E ++ L + D L+ L ++ RL P +
Sbjct: 244 TCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETS 303
Query: 372 AFFIAVLQKV 381
FFIA ++K+
Sbjct: 304 GFFIAKIRKL 313
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 88.2 bits (217), Expect = 7e-20
Identities = 64/275 (23%), Positives = 100/275 (36%), Gaps = 49/275 (17%)
Query: 11 EGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAVSMVP 70
+ P YP+ + + E +T Q+A +
Sbjct: 49 DEAGMKGFPHADYPD---AVRLETPAPVHALPGFEDGW-----------VTVQDASAQGC 94
Query: 71 PLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQ 130
+L Q +LD+CAAPG KT +LE+ ++ V+A D+D QR + +
Sbjct: 95 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA---------QVVAVDIDEQRLSRVYDN 145
Query: 131 TKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 190
KR+ + C + FDR+L D PCS G
Sbjct: 146 LKRLGMKATVKQGDGRYPSQWCGEQQ--------------------FDRILLDAPCSATG 185
Query: 191 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEI 250
+R+ PDI L LQ +I LK GG +VY+TCS+ P EN +
Sbjct: 186 VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAF 245
Query: 251 LRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKG 285
L++ EL + +PG + ++G
Sbjct: 246 LQRTAD-AELCETG-----TPEQPGKQNLPGAEEG 274
Score = 46.6 bits (109), Expect = 5e-06
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
Query: 285 GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNS----DEGLQQVED 340
G+ R I G + +E Q++
Sbjct: 185 GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA 244
Query: 341 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 380
L D E + P + + +P + FF A L K
Sbjct: 245 FLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 284
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 86.3 bits (212), Expect = 4e-19
Identities = 56/301 (18%), Positives = 95/301 (31%), Gaps = 51/301 (16%)
Query: 7 EVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAV 66
+ + + + P P L + + + + G++ Q+
Sbjct: 37 DDLRALKGKHFLLDPLMPELLVFPAQTDLHEH------PLYRA--------GHLILQDRA 82
Query: 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNL 126
S +P + LD P V+D CAAPG+KT L ++ G + A DLD +R
Sbjct: 83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK--------NQGKIFAFDLDAKRLAS 134
Query: 127 LIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 186
+ R + + + S+ +L D C
Sbjct: 135 MATLLARAGVSCCELAEEDFLAVS------------------PSDPRYHEVHYILLDPSC 176
Query: 187 SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL-KVGGRIVYSTCSMNPVENEA 245
SG G + + Q +L R+VYSTCS+ ENE
Sbjct: 177 SGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENED 236
Query: 246 VVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKH------VRKFRR 299
VV + L++ G+ L P GL + + + + V R
Sbjct: 237 VVRDALQQNPGAFRLAPALPAWPH----RGLSTFPGAEHCLRASPETTLSSGFFVAVIER 292
Query: 300 I 300
+
Sbjct: 293 V 293
Score = 47.4 bits (111), Expect = 3e-06
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 23/134 (17%)
Query: 260 LVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDI 319
L+D S + R + L + + +R FPS + +T
Sbjct: 171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ--QRALCHALTFPSLQRLVYST-- 226
Query: 320 EPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLP------------LERCMRLVPHD 367
+ +E V D L LP E C+R P
Sbjct: 227 -------CSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPET 279
Query: 368 QNSGAFFIAVLQKV 381
S FF+AV+++V
Sbjct: 280 TLSSGFFVAVIERV 293
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 44.9 bits (105), Expect = 2e-05
Identities = 30/182 (16%), Positives = 49/182 (26%), Gaps = 43/182 (23%)
Query: 84 DMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTN 143
D+ + G L V+A D + + N+ V
Sbjct: 151 DVFSYAGGFALHLALGFR-----------EVVAVDSSAEALRRAEENARLNGLGNVRVLE 199
Query: 144 HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLRKAPDIWRKWN 203
A + FD V+ D P G
Sbjct: 200 ANAFDLLRRLEKEGER-----------------FDLVVLDPPAFAKGKKDVERAYRAYK- 241
Query: 204 VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELV 261
++ +R I LLK GG + ++CS M A+VAE + + +V
Sbjct: 242 ------------EVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289
Query: 262 DV 263
+
Sbjct: 290 EK 291
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 42.6 bits (99), Expect = 1e-04
Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 32/259 (12%)
Query: 7 EVIEEGEVEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQEAV 66
+ E +E + S + L K+ + E +
Sbjct: 63 LDVAEAIMEVEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMR 122
Query: 67 SMVPPLFLDVQPDHFVLDMCAAPGSKTFQLLE-IIHQSTNPGALPNGMVIANDLDVQRCN 125
FLD + + L+ PG + + + + VI D +
Sbjct: 123 GQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIE 182
Query: 126 LLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 185
K + F A + KG + FD V+ D P
Sbjct: 183 TAKENAKLNG-------VEDRMKFIVGSAFEEMEKLQKKGEK---------FDIVVLDPP 226
Query: 186 CSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVEN 243
K + + G++L+K GG +V +CS ++
Sbjct: 227 AFVQH--EKDLKAGLRA-----------YFNVNFAGLNLVKDGGILVTCSCSQHVDLQMF 273
Query: 244 EAVVAEILRKCEGSVELVD 262
+ ++ K +++++
Sbjct: 274 KDMIIAAGAKAGKFLKMLE 292
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 39.4 bits (91), Expect = 0.001
Identities = 33/219 (15%), Positives = 60/219 (27%), Gaps = 54/219 (24%)
Query: 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133
+D+ P VL+ + G + L + + G VI+ ++ +L K
Sbjct: 94 MDINPGDTVLEAGSGSGGMSLFLSKAVG--------SQGRVISFEVRKDHHDLAKKNYKH 145
Query: 134 MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 193
+ + H N +F G + FD V D+
Sbjct: 146 WRDS------WKLSHVEEWPDNVDFIHKDISGATEDIKSLT--FDAVALDML-------- 189
Query: 194 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 253
+ + LK GG ++ V + + +R
Sbjct: 190 ------NPHVT----------LPVFYP---HLKHGGVCAVYVVNITQVIE---LLDGIRT 227
Query: 254 CEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHK 292
CE ++ +S EV +R W V
Sbjct: 228 CELALSCEKIS-EV-------IVRDWLVCLAKQKNGILA 258
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 32.8 bits (74), Expect = 0.094
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 74 LDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLIHQTKR 133
L ++ D VL + AA G+ L +I+ + + A + + L+ +
Sbjct: 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGI---------IYAVEYSAKPFEKLLELVRE 102
Query: 134 MCTANLIVTNHEAQHFPG 151
++ +
Sbjct: 103 RNNIIPLLFDASKPWKYS 120
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 31.7 bits (71), Expect = 0.25
Identities = 28/255 (10%), Positives = 72/255 (28%), Gaps = 30/255 (11%)
Query: 14 VEPIRPLPWYPNNLAWHSNFSRMQLRKNQTLERFHKFLKLENEIGNITRQE-----AVSM 68
V IR + + + + + ++ L + E V +
Sbjct: 60 VYQIRDEIVAAFRQVYPNFLGAYEKIRFKGIDNVSAHLYGQEAPEQFLILENGISYNVFL 119
Query: 69 VPPLFLDVQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDLDVQRCNLLI 128
L + D + GS + + + T ++ + + +
Sbjct: 120 NDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVA--AAMGGAMATTSVD--- 174
Query: 129 HQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 188
+ L + + EA H D + + +D ++ D P
Sbjct: 175 ---LAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT--YDIIIIDPPSFA 229
Query: 189 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAV 246
R +++ ++ +G+ +L G I+ ST + M + +
Sbjct: 230 ----RNKKEVFSVSK---------DYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQ 276
Query: 247 VAEILRKCEGSVELV 261
+ + K + + +
Sbjct: 277 IEKGFGKQKHTYLDL 291
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 25.8 bits (57), Expect = 4.7
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 17/62 (27%)
Query: 582 SFRISSEGLPVILPYITKQILYASL----VDF--KHLLQYKTIK-------FADFVDAEF 628
SFRI + P YI + L L + K + Y +A F A +
Sbjct: 13 SFRILASDKP----YILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALY 68
Query: 629 GE 630
GE
Sbjct: 69 GE 70
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 27.6 bits (61), Expect = 5.4
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 76 VQPDHFVLDMCAAPGSKTFQLLEIIHQSTNPGALPNGMVIANDL 119
V P+ V+D+ G ++ + G+
Sbjct: 64 VTPEGKVVDLGCGRGGWSYYCGGL-----KNVREVKGLTKGGPG 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,652,219
Number of extensions: 124236
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 15
Length of query: 730
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 638
Effective length of database: 1,144,436
Effective search space: 730150168
Effective search space used: 730150168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)