Your job contains 1 sequence.
>004788
MELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNI
NSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD
IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIE
FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGS
PVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSN
HLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSA
SPGPKSPFGESNSNSSGVGTLSGPQFLWGSPPPYSERSSSSAWPTSSVGHPFSSSGQGQG
FPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPLGGMGLSRNNAG
YMMNVGGRVGVGLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEAFTERGRT
RRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYD
FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAA
LVTHFQNSSLMNEDKRCRPIVFHSEGQETSDQEALLSSNLNIFIRQPDGSYSGDSLESLN
GYPDEKPEKI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004788
(730 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2117706 - symbol:ML3 "MEI2-like 3" species:370... 882 2.1e-176 3
TAIR|locus:2045605 - symbol:ML2 "MEI2-like 2" species:370... 848 2.3e-170 2
TAIR|locus:2156166 - symbol:ML1 "MEI2-like protein 1" spe... 1159 1.1e-117 1
TAIR|locus:2182885 - symbol:ML4 "MEI2-like 4" species:370... 1111 1.4e-112 1
TAIR|locus:2013583 - symbol:ML5 "MEI2-like protein 5" spe... 979 1.3e-98 1
TAIR|locus:2090350 - symbol:TEL1 "terminal EAR1-like 1" s... 254 2.2e-50 4
TAIR|locus:2008530 - symbol:TEL2 "terminal EAR1-like 2" s... 267 5.4e-42 3
POMBASE|SPAC27D7.03c - symbol:mei2 "RNA-binding protein i... 372 1.9e-40 3
DICTYBASE|DDB_G0279255 - symbol:DDB_G0279255 species:4468... 249 3.0e-32 3
GENEDB_PFALCIPARUM|PFF1125c - symbol:PFF1125c "RNA-bindin... 305 3.8e-25 1
UNIPROTKB|C6KT70 - symbol:PFF1125c "RNA-binding protein m... 305 3.8e-25 1
DICTYBASE|DDB_G0276005 - symbol:DDB_G0276005 species:4468... 190 2.6e-23 3
DICTYBASE|DDB_G0268266 - symbol:DDB_G0268266 "RNA recogni... 249 8.5e-17 2
DICTYBASE|DDB_G0286611 - symbol:DDB_G0286611 "sulphate an... 248 1.2e-16 2
TAIR|locus:2029647 - symbol:MCT1 "AT1G37140" species:3702... 193 3.4e-14 1
ASPGD|ASPL0000003579 - symbol:AN6494 species:162425 "Emer... 179 3.5e-09 2
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 164 2.1e-08 1
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 149 5.2e-07 2
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 116 6.3e-07 2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 146 9.5e-07 1
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 146 1.1e-06 2
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 140 1.7e-06 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 119 2.9e-06 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 119 2.9e-06 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 119 2.9e-06 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 143 2.9e-06 1
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 118 3.7e-06 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 118 3.7e-06 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 143 4.0e-06 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 143 4.0e-06 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 135 8.1e-06 1
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 113 1.3e-05 1
DICTYBASE|DDB_G0279639 - symbol:DDB_G0279639 "RNA-binding... 135 2.0e-05 2
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 136 2.3e-05 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 135 3.0e-05 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 128 3.9e-05 1
UNIPROTKB|C9IZL7 - symbol:NONO "Non-POU domain-containing... 123 4.3e-05 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 117 4.8e-05 2
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 135 5.0e-05 2
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 135 5.0e-05 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 127 6.3e-05 1
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 130 6.4e-05 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 130 6.4e-05 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 130 6.4e-05 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 116 6.8e-05 2
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 106 7.1e-05 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 106 7.1e-05 1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 123 7.9e-05 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 127 8.1e-05 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 127 8.3e-05 1
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 122 0.00011 2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 135 0.00013 2
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 129 0.00013 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 112 0.00014 2
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 116 0.00015 2
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 116 0.00015 2
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 124 0.00016 1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 124 0.00016 1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 128 0.00017 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 127 0.00018 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 123 0.00019 1
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 112 0.00019 1
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 123 0.00021 1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 123 0.00021 1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 123 0.00021 1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 123 0.00021 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 127 0.00022 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 127 0.00022 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 127 0.00022 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 123 0.00022 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 99 0.00025 2
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 104 0.00025 2
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 129 0.00027 1
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 124 0.00027 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 127 0.00031 2
WB|WBGene00017778 - symbol:psf-1 species:6239 "Caenorhabd... 108 0.00032 2
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 120 0.00032 1
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 112 0.00032 1
UNIPROTKB|Q2KJ42 - symbol:NONO "Uncharacterized protein" ... 123 0.00033 1
UNIPROTKB|F1PTP3 - symbol:NONO "Uncharacterized protein" ... 123 0.00033 1
UNIPROTKB|F1Q0F6 - symbol:F1Q0F6 "Uncharacterized protein... 123 0.00033 1
UNIPROTKB|Q15233 - symbol:NONO "Non-POU domain-containing... 123 0.00033 1
UNIPROTKB|I3LSU1 - symbol:NONO "Uncharacterized protein" ... 123 0.00033 1
MGI|MGI:1855692 - symbol:Nono "non-POU-domain-containing,... 123 0.00033 1
RGD|1549738 - symbol:Nono "non-POU domain containing, oct... 123 0.00033 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 124 0.00037 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 114 0.00037 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 115 0.00037 2
UNIPROTKB|G3N361 - symbol:NONO "Uncharacterized protein" ... 123 0.00039 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 124 0.00041 1
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 97 0.00042 2
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 124 0.00043 2
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 124 0.00043 2
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 120 0.00046 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 125 0.00046 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 125 0.00046 1
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 112 0.00049 1
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 112 0.00049 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 123 0.00049 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 123 0.00050 1
WARNING: Descriptions of 19 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 882 (315.5 bits), Expect = 2.1e-176, Sum P(3) = 2.1e-176
Identities = 175/289 (60%), Positives = 209/289 (72%)
Query: 1 MELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNI 60
+ELE +P++SL+ G S++ +D + NGVG++AGEHPYGEHPSRTLFVRNI
Sbjct: 114 LELETDPYDSLNKGFSRMGFADSNVDNVMPQNIFQNGVGSIAGEHPYGEHPSRTLFVRNI 173
Query: 61 NSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120
NSNVED EL++LFEQYG IRTLYTACK RGFVM+SY DIRA+R AMRALQ K L++RKLD
Sbjct: 174 NSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQGKLLKKRKLD 233
Query: 121 IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIE 180
IHFSIPKDNPSEKDVNQGTLVVFNL SVSN DL IFG YGE+KEIRETP+KRHHKF+E
Sbjct: 234 IHFSIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVE 293
Query: 181 FYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARRXXXXXXXXXXXXDEARGFRHQVGS 240
F+DV NR++I GKRIKLE SRPGGARR D++ + + V S
Sbjct: 294 FFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLNHVES 353
Query: 241 PVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKST 289
P+ +SP G W SP++ +PL +FSKSP G LSP + FS T
Sbjct: 354 PLASSPIGNWRN--SPID-HPLQSFSKSPIFGNLSPTKNIRYPEFSMKT 399
Score = 681 (244.8 bits), Expect = 2.1e-176, Sum P(3) = 2.1e-176
Identities = 146/239 (61%), Positives = 168/239 (70%)
Query: 453 GFFPESPETSFTNPVPLGGMGLSRNNAGYMMNVGGRVGVGLPLNVTDNGSPSLRMMSFPR 512
GFFP SPETS V G S N MN N+ + SP+ +M+S PR
Sbjct: 508 GFFPRSPETSSMGSVAF--RGASGN-----MNA--------QRNLRETSSPNFKMLSAPR 552
Query: 513 HGPLFFGNGSYSGLGTT--SNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTR 570
LF GNGSY T S + E G ++ ++ G+Q D K Q+QLDL KI+ GED R
Sbjct: 553 RSQLFTGNGSYLWPAATMVSIDDPLEDGSNQQFDSNGNQADIKIQFQLDLSKIMRGEDPR 612
Query: 571 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISF 630
TTLMIKNIPNKYT MLLAAIDE + GTYDFLYLPIDFKNKCNVGYAFINMVSP I+
Sbjct: 613 TTLMIKNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKNKCNVGYAFINMVSPKFTIAL 672
Query: 631 YEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQET 689
YEAFNGKKW+KFNSEKVASLAYARIQG+AAL+ HFQNSSLMNED+RC+PIVF +G E+
Sbjct: 673 YEAFNGKKWDKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDRRCQPIVF--DGSES 729
Score = 188 (71.2 bits), Expect = 2.1e-176, Sum P(3) = 2.1e-176
Identities = 65/177 (36%), Positives = 87/177 (49%)
Query: 275 SPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQ-GRA-NQT 332
SPI+ +PL +FSKS P+ N P +I P S K A + DQ GR +
Sbjct: 366 SPID-HPLQSFSKS-------PIFGNLSP-TKNIRYPEFSM--KTASVNNDQEGRRFSHL 414
Query: 333 NHMFS----NSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTLSGPQFLW 388
+H+FS N+AS + + +Q QSF G S FG NS+ S V TLSG +FLW
Sbjct: 415 DHLFSSSSYNNASHKASTFQQPQSF---------GSVSSFGSLNSHPSHVETLSGSEFLW 465
Query: 389 GXXXXXXXXXXXXXXXTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSG 445
G +PFSS+ + FPY +++GS H HH+GSAPSG
Sbjct: 466 GSPSSSAWPV-----------NPFSSNRENHRFPYSAQNGSL---HQLHHIGSAPSG 508
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 848 (303.6 bits), Expect = 2.3e-170, Sum P(2) = 2.3e-170
Identities = 171/308 (55%), Positives = 212/308 (68%)
Query: 1 MELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNI 60
MEL+ E ++ ++ S + ISD A N G V+ EHP GEHPSRTLFVRNI
Sbjct: 146 MELDVESQDNHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNI 205
Query: 61 NSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120
NS+VED EL +LFE +G+IR+LYTACK RGFVMISYYDIRAA AMRALQN LR+R LD
Sbjct: 206 NSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQNTLLRKRTLD 265
Query: 121 IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIE 180
IHFSIPK+NPSEKD+NQGTLV+FN+D +VSND+L Q+FGAYGE++EIRETP++R H+FIE
Sbjct: 266 IHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIE 325
Query: 181 FYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARRXXXXXXXXXXXXDEARGFRHQVGS 240
+YDV NRS+I GK IKLE SRPGGARR E F +QVGS
Sbjct: 326 YYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNFYNQVGS 385
Query: 241 PVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSN 300
V NSPPG W GSPV+ +P HAF++ GLG + P+NS+ + GLA+ P + +
Sbjct: 386 HVANSPPGNWP-IGSPVKGSPSHAFTRPHGLGMVRPVNSDNM------PGLASILPAHPS 438
Query: 301 HLPGLASI 308
G + +
Sbjct: 439 SFHGFSPV 446
Score = 830 (297.2 bits), Expect = 2.3e-170, Sum P(2) = 2.3e-170
Identities = 196/463 (42%), Positives = 257/463 (55%)
Query: 263 HAFSKSPGLGTL-SPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAP 321
H + PG + SP+ +P HAF++ GL PVNS+++PGLASILP H S+ +P
Sbjct: 386 HVANSPPGNWPIGSPVKGSPSHAFTRPHGLGMVRPVNSDNMPGLASILPAHPSSFHGFSP 445
Query: 322 IGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTL 381
+ DQG N +N N + +Y S PE + G + +SSG GT
Sbjct: 446 VSNDQGLLNHSNQTILNKGLMHNISYGQPHSLPEH---ITGGISNSMRFIAPHSSGFGTS 502
Query: 382 SGPQFLWGX--XXXXXXXXXXXXXXTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHV 439
S ++ WG +SS PF+ GFP+ R S +G + QHHV
Sbjct: 503 SDHRYRWGSPPQHMNYPGYTGVSSSSSSTERPFTVR---HGFPFAERQASLLGKY-QHHV 558
Query: 440 GSAPSGVSLDRNFGFFPESPETSFTNPVPLGGMGLSRNNAGYMMNVG-GRVGVGLPLNVT 498
GSAPS + + + SPE P+ MG++RN Y G +GV LP N +
Sbjct: 559 GSAPSSIHFNTQMNCYTGSPEI----PLGFSDMGINRN---YNSAHGKANLGVSLPGNSS 611
Query: 499 DNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEAFTERGRTRRVE--NCGSQVDSKKQY 556
+ M S P P FG GS GL + E F E+GR E N +D + Y
Sbjct: 612 EQDFTGFGMSSMPTV-P--FG-GS-RGLQSVRPEPFAEQGRIHNHESHNQNQFIDGGR-Y 665
Query: 557 QLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGY 616
+DLD+I SG++ RTTL+IKNIPNKYT KML+A IDE H+G YDFL LP DFKNKCN+G+
Sbjct: 666 HIDLDRIASGDEIRTTLIIKNIPNKYTYKMLVAEIDEKHKGDYDFLCLPTDFKNKCNMGH 725
Query: 617 AFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKR 676
AFINMVSP HI+ F + FNGK WEKFNS KVASLAYA IQG++AL ++ Q S M E K+
Sbjct: 726 AFINMVSPLHIVPFQQTFNGKIWEKFNSGKVASLAYAEIQGKSALASYMQTPSSMKEQKQ 785
Query: 677 CRPIV-FHSEGQETSDQEALLSSNLNIFIRQPDGSYSGDSLES 718
P V +H +GQ+ +D E L SS NI D SY+ D +E+
Sbjct: 786 LFPEVSYHDDGQDANDHEQLFSSIWNITAPDSDWSYTMDLIEN 828
Score = 40 (19.1 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 2 ELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNIN 61
++E EP++SLS + L A G Y S+ + + P TLF +N
Sbjct: 13 KMELEPNKSLSADMPSLLSRSSEAFNGGTGYRSSSDLSMFSSSLP-------TLFHEKLN 65
Query: 62 SNVED 66
D
Sbjct: 66 MTDSD 70
>TAIR|locus:2156166 [details] [associations]
symbol:ML1 "MEI2-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048507 "meristem development" evidence=IGI] [GO:0045836
"positive regulation of meiosis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:D86122
EMBL:AB022212 EMBL:AY062536 EMBL:BT008806 EMBL:AK316683
IPI:IPI00533512 RefSeq:NP_001032122.1 RefSeq:NP_568946.1
UniGene:At.340 ProteinModelPortal:Q8W4I9 SMR:Q8W4I9 IntAct:Q8W4I9
PaxDb:Q8W4I9 PRIDE:Q8W4I9 EnsemblPlants:AT5G61960.1
EnsemblPlants:AT5G61960.2 GeneID:836317 KEGG:ath:AT5G61960
TAIR:At5g61960 eggNOG:NOG262869 HOGENOM:HOG000030212
InParanoid:Q8W4I9 OMA:HEDIHIT PhylomeDB:Q8W4I9
ProtClustDB:CLSN2687061 Genevestigator:Q8W4I9 GO:GO:0048507
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 Uniprot:Q8W4I9
Length = 915
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 300/748 (40%), Positives = 396/748 (52%)
Query: 12 SIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRS 71
S+G +L DG + ++H G GE GE PSRTL V NI+SNVED EL+
Sbjct: 179 SVGGMEL---DGDIFSSVSHRNGERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKV 235
Query: 72 LFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS 131
LFEQ+GDI+ L+TACK+RGF+M+SY DIRAA+ A RALQNK LR KLDI +SI K+NPS
Sbjct: 236 LFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRGTKLDIRYSISKENPS 295
Query: 132 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVXXXXXXX 191
+KD ++G L+V NLD+S+SN +L ++ +YGEVKEIR T H +IEF+DV
Sbjct: 296 QKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAAL 355
Query: 192 XXXNRSDINGKRIKLEPSRPGGARRXXXXXXXXXXXXDEARGFRHQVGSPVTNSPPGTWA 251
N ++ GK+++L P+ P G R + + + PG +
Sbjct: 356 GGLNGLEVAGKKLQLVPTYPEGTRYTSQCAANDTEGCLPKTSYSNTSSGHIGRHFPGMIS 415
Query: 252 QFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPP 311
S + + S G SP+NS S S + P N G+++ P
Sbjct: 416 STSS--DGGSMRVIHNSIG----SPVNSFIERHRSLSIPIGFPPSAN-----GISASKPV 464
Query: 312 HLSNTGKIAPIGKDQGRANQTN---HMFSNSAS--LQGAAYQHSQSFPEQKLSASPGPKS 366
L G + G + N H FS G+ Y S +F E S G K+
Sbjct: 465 GLQEHGHHFD-NSNMGIQSMPNLHPHSFSEYVDNFANGSPYT-SSAFSEM---VSDGSKA 519
Query: 367 PFGESNSNSSGVGTLSG-------------PQFLWGXXXXXXXXXXXXXXXTSSVGHPFS 413
G N GV SG P LW +S H S
Sbjct: 520 NEGFMIHNVRGVEGFSGGGIGSPMHQSSRRPINLWSNSNTQQQNPSSGMMWPNSPSHINS 579
Query: 414 SSGQGQGFPYGSRHGSFI----GSHHQHHVGSAP--SGVSLDRNFGFFPESPETSFTNPV 467
Q SR + S HH+GSAP + DR + ES E+S +
Sbjct: 580 IPTQRPPVTVFSRAPPIMVNMASSPVHHHIGSAPVLNSPFWDRRQAYVAESLESSGFHIG 639
Query: 468 PLGGMGLSRNNAGYMMNVGGRVGVGLPLNVTDNGSPSLRMMSFPRHGPLFFGN---GSYS 524
G MG+ ++ + M++G + N D S + + S + LF G GS
Sbjct: 640 SHGSMGIPGSSPSHPMDIGSHKTFSVGGNRMDVNSQNAVLRSPQQLSHLFPGRSPMGSMP 699
Query: 525 GLGTTSNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTS 584
G + NE + RR E+ S D KK Y+LD+D+I+ GED RTTLMIKNIPNKYTS
Sbjct: 700 GSFDSPNERYRNLSH-RRSESSSSNAD-KKLYELDVDRILRGEDRRTTLMIKNIPNKYTS 757
Query: 585 KMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 644
KMLL+AIDE+ +GTYDFLYLPIDFKNKCNVGYAFIN++ P I+ F++AFNGKKWEKFNS
Sbjct: 758 KMLLSAIDEHCKGTYDFLYLPIDFKNKCNVGYAFINLIEPEKIVPFFKAFNGKKWEKFNS 817
Query: 645 EKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQETSDQEAL-LSSNLNIF 703
EKVA+L YARIQG+ AL+ HFQNSSLMNEDKRCRPI+FH++G DQE + SN+
Sbjct: 818 EKVATLTYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNIRSR 877
Query: 704 IRQPDGS----YSGDSLESLNGYPDEKP 727
+P S Y+ S+ S++ +E P
Sbjct: 878 PGKPRSSSIDNYNSFSISSVSENREETP 905
>TAIR|locus:2182885 [details] [associations]
symbol:ML4 "MEI2-like 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
[GO:0048507 "meristem development" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL163652 GO:GO:0003723
eggNOG:NOG262869 HOGENOM:HOG000030212 ProtClustDB:CLSN2687061
GO:GO:0048507 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AK226960 IPI:IPI00536095 PIR:T48500 RefSeq:NP_196346.1
UniGene:At.5054 ProteinModelPortal:Q9LYN7 SMR:Q9LYN7 PaxDb:Q9LYN7
PRIDE:Q9LYN7 EnsemblPlants:AT5G07290.1 GeneID:830620
KEGG:ath:AT5G07290 TAIR:At5g07290 InParanoid:Q9LYN7 OMA:HEDIRIT
PhylomeDB:Q9LYN7 Genevestigator:Q9LYN7 Uniprot:Q9LYN7
Length = 907
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 296/722 (40%), Positives = 389/722 (53%)
Query: 36 NGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMIS 95
+ V TVA EHP GE SR LFVRN++S++ED EL LF+Q+GD+R L+TA K+RGF+M+S
Sbjct: 195 SNVSTVA-EHPQGEILSRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVS 253
Query: 96 YYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLR 155
YYDIRAA+ A RAL + LR RKLDI +SIPK+NP E ++G L V NLD+S+SN++L
Sbjct: 254 YYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPKENS-SEGALWVNNLDSSISNEELH 312
Query: 156 QIFGAYGEVKEIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGAR 215
IF +YGE++E+R T H+ +IEF+DV N ++ G+++KL P+ P G
Sbjct: 313 GIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEGTS 372
Query: 216 RXXXXXXXXXXXXDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLS 275
F + + + PG A + ++ + S G S
Sbjct: 373 FWPQFASDDGEGGLPKMAFNNLSSAHMGRHFPGILAS--TSIDGGSIRGMHNSVG----S 426
Query: 276 PINSN-PLH-AFSKSTGLATPTPVNSNHLP-GLASILPPH-LSNTGKIAPIGKDQGRANQ 331
P+NS H + GL V S P GL P S TG Q N
Sbjct: 427 PMNSFIERHQSLDVPIGLPPSARVISASKPVGLQEFGNPFDNSKTGI-------QSMPNL 479
Query: 332 TNHM---FSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGT------LS 382
H N AS G+ Y+ S +F E S G K+ G SN GVG +
Sbjct: 480 HPHFPDYLDNFAS--GSPYKSSTTFSEM---VSDGQKANEGFMMSNVRGVGVDGFNGGVI 534
Query: 383 GPQFLWGXXXXXXX--XXXXXXXXTSSVGHPFSSS-GQGQGFPYG--------SRHGSFI 431
G G S G + +S + G P SR +
Sbjct: 535 GSPINQGSHRGNLNLWSNSNSQQHNQSSGMMWPNSPSRVNGVPSQRIPPVTAFSRASPLM 594
Query: 432 ----GSHHQHHVGSAP--SGVSLDRNFGFFPESPETSFTNPVPLGGMGLSRNNAGYMMNV 485
S HH+GSAP + DR + ESPE+S + G MG ++ + M+
Sbjct: 595 VNMASSPVHHHIGSAPVLNSPFWDRRQAYVAESPESSGFHLGSPGSMGFPGSSPSHPMDF 654
Query: 486 GG-RVGVGLPLNVTDNGSPSLRMMSFPRHGPLFFGNG---SYSGLGTTSNEAFTERGRTR 541
G +V + N + S + + S + LF G S SG NE + R
Sbjct: 655 GSHKVFSHVGGNRMEANSKNAVLRSSRQMPHLFTGRSPMLSVSGSFDLPNERYRNLSH-R 713
Query: 542 RVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF 601
R E+ S + KK Y+LD+D+I+ GED+RTTLMIKNIPNKYTSKMLLAAIDE +GTYDF
Sbjct: 714 RSESNSSNAE-KKLYELDVDRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEYCKGTYDF 772
Query: 602 LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAAL 661
LYLPIDFKNKCNVGYAFIN++ P +I+ FY+AFNGKKWEKFNSEKVASLAY RIQG++AL
Sbjct: 773 LYLPIDFKNKCNVGYAFINLIEPENIVPFYKAFNGKKWEKFNSEKVASLAYGRIQGKSAL 832
Query: 662 VTHFQNSSLMNEDKRCRPIVFHSEGQETSDQEAL-LSSNLNIFIRQPDGSYSGDSLESLN 720
+ HFQNSSLMNEDKRCRPI+FH+ G DQE + SN IR G + +S+E+
Sbjct: 833 IAHFQNSSLMNEDKRCRPILFHTAGPNAGDQEPFPMGSN----IRSRPGKHRTNSIENYT 888
Query: 721 GY 722
+
Sbjct: 889 NF 890
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 211/431 (48%), Positives = 272/431 (63%)
Query: 275 SPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNH 334
SP+ +PL + + + +P + HL GLAS L + K+APIG+ Q +N
Sbjct: 370 SPVEGSPLQSVLSRSPVFGLSPTRNGHLSGLASALNSQ-GPSSKLAPIGRGQIGSNG--- 425
Query: 335 MFSNSASLQGAAYQHSQSFPEQKLSAS-PGPKSPFGESNSNSSGVGTLSGPQFLWGXXXX 393
F S+ L F E K+ G SP G SN G+ TLSG +FLWG
Sbjct: 426 -FQQSSHL----------FQEPKMDNKYTGNLSPSGPLISNGGGIETLSGSEFLWGSPNA 474
Query: 394 XXXXXXXXXXXTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFG 453
TSS G+P S+ + P+ +H + SHH HVGSAPSGV L+++FG
Sbjct: 475 RSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHHHFHVGSAPSGVPLEKHFG 534
Query: 454 FFPESPETS-FTNPVPLGGM-GLSRNNAGYMMNVGGRVGVGLPLNVTDNGSPSLRMMSFP 511
F PES + + F N V L GM G+ N + + G+ ++ +NG S RMMS P
Sbjct: 535 FVPESSKDALFMNTVGLQGMSGMGLNGGSFSSKMANN-GIINSGSMAENGFSSYRMMSSP 593
Query: 512 RHGPLFFGNGSYSGLGTTSNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRT 571
R P+F +G G + ++ E GR RRVEN +QV+S+KQ+QLDL+KI++GED+RT
Sbjct: 594 RFSPMFLSSGLNPGRFASGFDSLYENGRPRRVENNSNQVESRKQFQLDLEKILNGEDSRT 653
Query: 572 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFY 631
TLMIKNIPNKYTSKMLLAAIDE ++GTY+FLYLPIDFKNKCNVGYAFINM++P II FY
Sbjct: 654 TLMIKNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKNKCNVGYAFINMLNPELIIPFY 713
Query: 632 EAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHSEGQETSD 691
EAFNGKKWEKFNSEKVASLAYARIQG++AL+ HFQNSSLMNED RCRPI+F + S
Sbjct: 714 EAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNEDMRCRPIIFDTPNNPESV 773
Query: 692 QEALLSSNLNI 702
++ + + N+
Sbjct: 774 EQVVDEESKNM 784
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 195/351 (55%), Positives = 234/351 (66%)
Query: 1 MELEFEPHESLSI-GVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRN 59
MEL+ + ++LS+ G +L++S + G I + I NG GTVAGEHPYGEHPSRTLFVRN
Sbjct: 116 MELDADFRDNLSMSGPPRLSLSS-LGGNAIPQFNIPNGAGTVAGEHPYGEHPSRTLFVRN 174
Query: 60 INSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 119
INSNVED EL +LFEQYGDIRTLYT CKHRGFVMISYYDIR+AR AMR+LQNKPLRRRKL
Sbjct: 175 INSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKL 234
Query: 120 DIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFI 179
DIHFSIPKDNPSEKD+NQGTLVVFNLD S+SNDDL IFGA+GE+KEIRETPHKRHHKF+
Sbjct: 235 DIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFV 294
Query: 180 EFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARRXXXXXXXXXXXXDEARGFRHQVG 239
EFYDV NR +I GKRIK+EPSRPGGARR D+ + +G
Sbjct: 295 EFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARRSLMLQLNQDLENDDLH-YLPMIG 353
Query: 240 SPVTNSPP--GTWAQFGSPVERNPLHA-FSKSPGLGTLSPINSNPLHAFSKSTGLATPT- 295
SP+ NSPP G W SPVE +PL + S+SP G LSP + L + + P+
Sbjct: 354 SPMANSPPMQGNWP-LNSPVEGSPLQSVLSRSPVFG-LSPTRNGHLSGLASALNSQGPSS 411
Query: 296 ---PVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQ 343
P+ + HL K+ K G + + + SN ++
Sbjct: 412 KLAPIGRGQIGSNGFQQSSHLFQEPKMD--NKYTGNLSPSGPLISNGGGIE 460
>TAIR|locus:2090350 [details] [associations]
symbol:TEL1 "terminal EAR1-like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
IPI:IPI00518069 RefSeq:NP_189242.1 UniGene:At.53499
ProteinModelPortal:F4JBE2 SMR:F4JBE2 PRIDE:F4JBE2
EnsemblPlants:AT3G26120.1 GeneID:822211 KEGG:ath:AT3G26120
OMA:NSRKICQ ArrayExpress:F4JBE2 Uniprot:F4JBE2
Length = 615
Score = 254 (94.5 bits), Expect = 2.2e-50, Sum P(4) = 2.2e-50
Identities = 50/115 (43%), Positives = 73/115 (63%)
Query: 593 ENHR---GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 649
E+H +YDF+YLP+DF NKCNVGY F+NM SP FY+AF+G++WE FNS K+
Sbjct: 447 ESHHQPYSSYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQ 506
Query: 650 LAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHS--EGQETSDQEALLSSNLNI 702
+ YAR+QG L HF++S E + P+VF +G++ ++ +S N+ I
Sbjct: 507 ITYARVQGLEDLKEHFKSSKFPCEAELYLPVVFSPPRDGKQLTEP---VSINITI 558
Score = 239 (89.2 bits), Expect = 2.2e-50, Sum P(4) = 2.2e-50
Identities = 45/93 (48%), Positives = 60/93 (64%)
Query: 123 FSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 182
F +P + NQGTLV+FNLD VS+ LRQIF YG +KE+RETP+K+H +F+EFY
Sbjct: 198 FVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFY 257
Query: 183 DVXXXXXXXXXXNRSDINGKRIKLEPSRPGGAR 215
DV N +I GK++ +E SRPGG +
Sbjct: 258 DVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIK 290
Score = 101 (40.6 bits), Expect = 2.2e-50, Sum P(4) = 2.2e-50
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 521 GSYSGLGTTSNEAFTERGRTRRVENCG-SQVDSKKQYQLDLDKIISGEDTRTTLMIKNIP 579
G+ S T ++ + G+ R+++N SQ ++ D S D RTTLMIKNIP
Sbjct: 361 GTESECAETKSKNVAKWGKKRQMKNMELSQFLISEETMEDP----SCRDPRTTLMIKNIP 416
Query: 580 NKYTSKMLLAAIDEN 594
NKY+ K+LL +D++
Sbjct: 417 NKYSQKLLLDMLDKH 431
Score = 101 (40.6 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC--KHRGFVMISYYDIRAARTAMRALQN 111
TL + N++ V + LR +F+ YG I+ L KH+ FV +YD+R A A +
Sbjct: 214 TLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFV--EFYDVRDAARAFDRMNG 271
Query: 112 KPLRRRKLDIHFSIP 126
K + +++ I FS P
Sbjct: 272 KEIGGKQVVIEFSRP 286
Score = 96 (38.9 bits), Expect = 2.2e-50, Sum P(4) = 2.2e-50
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 33 PISNGVGTVAGEHPYGEH-PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF 91
P NGV + A P + P+R+L + ++ +V + +R E YGD+R + G
Sbjct: 86 PCFNGV-SAAQRLPLPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGI 144
Query: 92 VMISYYDIRAARTAMRALQNKPLRRR 117
V + +YDIR A+ A+R + + ++++
Sbjct: 145 VTVHFYDIRDAKRAVREVCGRHMQQQ 170
Score = 41 (19.5 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDV 184
+L + ++ V+ +R+ YG+V+ ++ + FYD+
Sbjct: 107 SLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDI 152
Score = 37 (18.1 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 241 PVTNSPPGTWAQFGSPVERN 260
PV SPP Q PV N
Sbjct: 536 PVVFSPPRDGKQLTEPVSIN 555
>TAIR|locus:2008530 [details] [associations]
symbol:TEL2 "terminal EAR1-like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
EMBL:AC008113 HSSP:P09012 EMBL:DQ446408 IPI:IPI00539717
RefSeq:NP_176943.1 UniGene:At.52426 ProteinModelPortal:Q9FXE0
SMR:Q9FXE0 PRIDE:Q9FXE0 EnsemblPlants:AT1G67770.1 GeneID:843102
KEGG:ath:AT1G67770 TAIR:At1g67770 eggNOG:NOG320075
HOGENOM:HOG000090865 InParanoid:Q9FXE0 OMA:NEIRYRH PhylomeDB:Q9FXE0
ProtClustDB:CLSN2914477 Genevestigator:Q9FXE0 Uniprot:Q9FXE0
Length = 527
Score = 267 (99.0 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 59/132 (44%), Positives = 78/132 (59%)
Query: 568 DTRTTLMIKNIPNKYTSKMLLAAID------------ENHR---GTYDFLYLPIDFKNKC 612
D RTT+MIKNIPNKYT K+LL +D E ++ +YDF+YLPIDF NK
Sbjct: 334 DGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKS 393
Query: 613 NVGYAFINMVSPSHIISFYEAFNGKKWEKFNS-EKVASLAYARIQGQAALVTHFQNSSLM 671
NVGY F+NM SP + Y++F+ + W F + K+ + YARIQG +L HF+N L
Sbjct: 394 NVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNVRLA 453
Query: 672 N-EDKRCRPIVF 682
E P+VF
Sbjct: 454 GVEIDEYMPVVF 465
Score = 212 (79.7 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 42/92 (45%), Positives = 58/92 (63%)
Query: 122 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEF 181
HF P+ N + NQG+LV+ NL+ +VS+ LR IF YGEVK++RETP KR +F+EF
Sbjct: 167 HFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEF 226
Query: 182 YDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+DV N I+GK + ++ SRPGG
Sbjct: 227 FDVRDAAKALRVMNGKVISGKPMVIQFSRPGG 258
Score = 103 (41.3 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGFVMISYYDIRAART 104
P G + +L + N+ V LR +F+ YG+++ + T CK R + ++D+R A
Sbjct: 177 PEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCK-REQRFVEFFDVRDAAK 234
Query: 105 AMRALQNKPLRRRKLDIHFSIP 126
A+R + K + + + I FS P
Sbjct: 235 ALRVMNGKVISGKPMVIQFSRP 256
Score = 84 (34.6 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 16/78 (20%), Positives = 40/78 (51%)
Query: 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTA 105
P P+R + + + + V + LR E +G++R + H G V+ +Y++ ++ A
Sbjct: 73 PTSVTPTRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRA 132
Query: 106 MRALQNKPLRRRKLDIHF 123
++ + +++++ HF
Sbjct: 133 FNEIRYRHMQQQEQQQHF 150
Score = 42 (19.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 140 LVVFNLDASVSNDDLRQIFGAYGEVKEIR-ETPHKRHHKFIEFYDV 184
+++ + A+V+ LR+ +GEV+ ++ E H+ F FY++
Sbjct: 82 VMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIF-HFYNL 126
>POMBASE|SPAC27D7.03c [details] [associations]
symbol:mei2 "RNA-binding protein involved in meiosis
Mei2" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=IDA] [GO:0004860 "protein kinase inhibitor
activity" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007127 "meiosis I" evidence=TAS] [GO:0033620
"Mei2 nuclear dot" evidence=IDA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IDA] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC27D7.03c GO:GO:0005829
EMBL:CU329670 GO:GO:0006950 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0004860 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0007127
eggNOG:NOG262869 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:X07180 PIR:S00391 RefSeq:NP_594609.1 ProteinModelPortal:P08965
STRING:P08965 EnsemblFungi:SPAC27D7.03c.1 GeneID:2542080
KEGG:spo:SPAC27D7.03c OMA:IMETESP OrthoDB:EOG41ZJK1
NextBio:20803153 GermOnline:SPAC27D7.03c GO:GO:0033620
GO:GO:0034064 Uniprot:P08965
Length = 750
Score = 372 (136.0 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 73/142 (51%), Positives = 97/142 (68%)
Query: 558 LDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYA 617
+D +I SG DTRTT+MIKNIPNK+T +ML ID ++GTYDFLYL IDF NKCNVGYA
Sbjct: 584 VDYAQIASGIDTRTTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYA 643
Query: 618 FINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRC 677
FIN + P II+F +A G +W F+SEK+ ++YA IQG+ L+ F+NS +M+E+
Sbjct: 644 FINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENPAY 703
Query: 678 RPIVFHSEGQETSDQEALLSSN 699
RP +F S G +E + N
Sbjct: 704 RPKIFVSHGPNRGMEEPFPAPN 725
Score = 113 (44.8 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHR-GFVMISYYDIRAARTAMRA 108
H SR LFV N+ V L LF + GD++ + T+ G +++++DIR A A ++
Sbjct: 192 HASRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKS 251
Query: 109 LQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLD 146
L+++ +L ++F + + +K +NQG + F LD
Sbjct: 252 LRSQRFFNDRL-LYFQFCQRSSIQKMINQGATIQF-LD 287
Score = 61 (26.5 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 35/112 (31%), Positives = 51/112 (45%)
Query: 255 SPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLS 314
+P +RNP ++ S G ++ NP+ A S+ L NS+ L G+ P S
Sbjct: 457 APSDRNPSRQYN-SIRYG----LDVNPI-APPNSSRLKQR---NSDLLNGINPQWSPFSS 507
Query: 315 NTGKI--APIGKDQGRANQT---NHMFSNSASLQGAAYQHSQSFPEQKLSAS 361
NTGK+ +P G R + T N SN +L A+ S + LSAS
Sbjct: 508 NTGKVFDSPTGSLGMRRSLTVGANASCSNPTNLSFASLTLHDSKADSTLSAS 559
Score = 39 (18.8 bits), Expect = 9.4e-33, Sum P(3) = 9.4e-33
Identities = 20/72 (27%), Positives = 28/72 (38%)
Query: 99 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGT---LVVFNLDASVSNDDLR 155
I ++ A +AL KP S N + D+ L V NL V L
Sbjct: 156 ISSSEQAAQALTRKP---SVTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLL 212
Query: 156 QIFGAYGEVKEI 167
++F G+VK I
Sbjct: 213 ELFSKLGDVKGI 224
Score = 38 (18.4 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 51 PSRTLF-VRNINSNVEDLELRSLFEQY 76
PS T F ++NSN +D+++ S +Y
Sbjct: 170 PSVTGFRSSSLNSNSDDIDIFSHASRY 196
>DICTYBASE|DDB_G0279255 [details] [associations]
symbol:DDB_G0279255 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0279255
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201
Pfam:PF04059 EMBL:AAFI02000030 RefSeq:XP_641754.1
ProteinModelPortal:Q54X23 EnsemblProtists:DDB0205680 GeneID:8621952
KEGG:ddi:DDB_G0279255 InParanoid:Q54X23 ProtClustDB:CLSZ2846744
Uniprot:Q54X23
Length = 1698
Score = 249 (92.7 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 47/102 (46%), Positives = 68/102 (66%)
Query: 561 DKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFIN 620
+ IISG DTRT+LMI+NIPN+ T + L A IDE + TYDFL +P+D K + GYAFIN
Sbjct: 1564 ENIISGVDTRTSLMIRNIPNRLTQQTLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1623
Query: 621 MVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALV 662
++ F++ F +W+ +N +K+ + YA IQG+ AL+
Sbjct: 1624 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL 1665
Score = 209 (78.6 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 58/173 (33%), Positives = 97/173 (56%)
Query: 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG-FVMISYYDIRAARTAMR 107
E PSR LF+++I +L +S E G I ++Y + K++G F++ISY DIR + A
Sbjct: 911 ESPSRYLFIKSIRGINHNL-FKSKIESIGQINSVYGSIKNKGGFLIISYLDIRHSIEAFN 969
Query: 108 ALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDD-LRQI---FGAYGE 163
LQ KL +++ KD + V++GTL+ A+ SNDD ++ I F +GE
Sbjct: 970 ELQKVDFGS-KLIVNYCFDKD----QTVDKGTLI-----ATFSNDDQIKNIVNDFSKFGE 1019
Query: 164 VKEIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
+K+IR++P+K KF+EFY++ +++N +IK+ S GG+ +
Sbjct: 1020 IKDIRDSPNKPLQKFVEFYNINSTLKAI-----NNLNSDKIKVAFSHHGGSSK 1067
Score = 47 (21.6 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 28/126 (22%), Positives = 51/126 (40%)
Query: 412 FSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPLGG 471
+SS Q P S +GS G+ + H + + N F S T + +P L
Sbjct: 264 YSSPNQNYYSPKNS-NGS--GALNNHEIEQKRNSYDGFGNKTLFSSSTSTHYQSPSSLSS 320
Query: 472 MGLSRNNAGYMMNVGGRVGVGLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSN 531
G S N+ ++ R+ N+ N S +L + + + SYS +G++++
Sbjct: 321 AG-SLNSPKSQVS---RLSSS-DNNIISNYSNNL--IDYKNINIRSSQDNSYSSIGSSND 373
Query: 532 EAFTER 537
F +
Sbjct: 374 NTFNNK 379
Score = 46 (21.3 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 83 YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVV 142
Y+ G ++ ++I R + NK L H+ P S +N V
Sbjct: 272 YSPKNSNGSGALNNHEIEQKRNSYDGFGNKTLFSSSTSTHYQSPSSLSSAGSLNSPKSQV 331
Query: 143 FNLDASVSN 151
L +S +N
Sbjct: 332 SRLSSSDNN 340
Score = 39 (18.8 bits), Expect = 9.8e-15, Sum P(3) = 9.8e-15
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 86 CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI--HFSIPKDNPSEKDVN 136
C H +I I L++ PL+ DI SI D+PS K +N
Sbjct: 636 CMHN-LSVIEESPIEQVSIVREELESIPLQEES-DIVQPKSIISDDPSFKQIN 686
Score = 38 (18.4 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 330 NQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSS 376
N N+ ++N + ++H S P Q P +N+N++
Sbjct: 1390 NNYNNNYNNLNNKNQHRFKHQLSQPHQNQFKKYQPTCNNNNNNNNNN 1436
>GENEDB_PFALCIPARUM|PFF1125c [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0045836 "positive
regulation of meiosis" evidence=ISS] InterPro:IPR012677
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836
InterPro:IPR007201 Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 305 (112.4 bits), Expect = 3.8e-25, P = 3.8e-25
Identities = 64/160 (40%), Positives = 95/160 (59%)
Query: 526 LGTTSNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSK 585
LGT N + + NC + +++K KI+ TT+M++NIPNKYT
Sbjct: 258 LGTILNIQDLDIHNRNNMNNCNNNINNKS-------KIL------TTVMLRNIPNKYTQN 304
Query: 586 MLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 645
ML+ ++E+ +G YDF YLPIDF+NKCNVGYAFIN + P + F + FN K F S
Sbjct: 305 MLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELFIKFFNNYKLNAFKSN 364
Query: 646 KVASLAYARIQGQAALVTHFQNSSLMNED-KRCRPIVFHS 684
KV S+ + R+QG A + H++NS++M + +PI+F +
Sbjct: 365 KVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILFQN 404
>UNIPROTKB|C6KT70 [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003723
"RNA binding" evidence=ISS] [GO:0045836 "positive regulation of
meiosis" evidence=ISS] InterPro:IPR012677 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836 InterPro:IPR007201
Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 305 (112.4 bits), Expect = 3.8e-25, P = 3.8e-25
Identities = 64/160 (40%), Positives = 95/160 (59%)
Query: 526 LGTTSNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSK 585
LGT N + + NC + +++K KI+ TT+M++NIPNKYT
Sbjct: 258 LGTILNIQDLDIHNRNNMNNCNNNINNKS-------KIL------TTVMLRNIPNKYTQN 304
Query: 586 MLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 645
ML+ ++E+ +G YDF YLPIDF+NKCNVGYAFIN + P + F + FN K F S
Sbjct: 305 MLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELFIKFFNNYKLNAFKSN 364
Query: 646 KVASLAYARIQGQAALVTHFQNSSLMNED-KRCRPIVFHS 684
KV S+ + R+QG A + H++NS++M + +PI+F +
Sbjct: 365 KVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILFQN 404
>DICTYBASE|DDB_G0276005 [details] [associations]
symbol:DDB_G0276005 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0276005
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_643375.1 ProteinModelPortal:Q552K7
EnsemblProtists:DDB0217746 GeneID:8620259 KEGG:ddi:DDB_G0276005
eggNOG:NOG269978 InParanoid:Q552K7 OMA:NNMNHPN
ProtClustDB:CLSZ2846869 Uniprot:Q552K7
Length = 1984
Score = 190 (71.9 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 47/131 (35%), Positives = 71/131 (54%)
Query: 547 GSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPI 606
GS + + ++LD I SG + +TT+MIKNIP K+T + L + + H YD+LY+P
Sbjct: 1767 GSFEGTDDSHIINLDDIRSGVNQKTTVMIKNIPYKFTH-LNLDTMFKKHNLAYDYLYMPT 1825
Query: 607 DFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQG---QAALVT 663
D K + GY F+N V+ II +N KK N K + YAR+QG +A V
Sbjct: 1826 DPITKAHYGYTFVNFVNYQDIIQLCSLYNNKKLG--NHPKFCEITYARLQGFPQTSATVA 1883
Query: 664 HFQNSSLMNED 674
+ N++ N +
Sbjct: 1884 NNNNNNNNNNN 1894
Score = 171 (65.3 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 54/179 (30%), Positives = 89/179 (49%)
Query: 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG--FVMISYYDIRAAR 103
P+G SR L ++ N+N++ L F+++G+I+++Y G V+ISY+DIR +
Sbjct: 1411 PHGGKASRNLLIKT-NANIDLRNLICKFKEHGEIKSVYQNITRSGTMHVVISYFDIRNSV 1469
Query: 104 TAMRA--------------LQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV 149
A+ A N + +L I++ + KD P ++ GTLV+FN DA
Sbjct: 1470 FALSANCNSSSCSNNSSTNKNNNDIINDRLSIYYCLNKD-P----IDHGTLVLFNFDAVF 1524
Query: 150 S-NDDLRQIFGA---YGEVKEIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRI 204
S N + + A +G+++EIRE K KFIEFYD+ + GK++
Sbjct: 1525 STNSNTHMLTSALNQFGQIREIREDL-KNKLKFIEFYDIRDAIAAVNALKKQVFFGKKL 1582
Score = 92 (37.4 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 35/107 (32%), Positives = 53/107 (49%)
Query: 49 EHPSRTLF----VRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAART 104
+H + LF V + NSN L S Q+G IR + K++ I +YDIR A
Sbjct: 1511 DHGTLVLFNFDAVFSTNSNTH--MLTSALNQFGQIREIREDLKNK-LKFIEFYDIRDAIA 1567
Query: 105 AMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSN 151
A+ AL+ + +KL + S+ D+ S+K N T VFN+ S+
Sbjct: 1568 AVNALKKQVFFGKKLLVRLSV-LDH-SKKSQNNTT--VFNVSDQFSD 1610
Score = 54 (24.1 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 333 NHMFSNSAS--LQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSG 377
+ +++NS S Q Y H Q +Q+ +S P SP S S SSG
Sbjct: 1723 SQLYNNSKSSPTQSPRYSHDQQQQQQQQHSSQ-PTSPH-VSKSGSSG 1767
Score = 49 (22.3 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 26/109 (23%), Positives = 41/109 (37%)
Query: 429 SFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPLGGMGLSRNNAGYMMNVGG- 487
SF S++ HH PS + N ES + SF N S NN + N G
Sbjct: 598 SF-NSYNNHHRYKEPSHEAQVFNDS---ESIKNSFNNSNHSNNGSFSNNNGSFSNNNGSF 653
Query: 488 ---RVGVGLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEA 533
G +N +NGS + + +G + S++ +N +
Sbjct: 654 NSFNNGQNNSINNNNNGSFNSYNSNRNNNGSFNSHSNSFNNYNNNNNNS 702
Score = 47 (21.6 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 27/122 (22%), Positives = 44/122 (36%)
Query: 258 ERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTG 317
E N ++ S + +LSP + + + + + N+ P + + + SNT
Sbjct: 247 ENNDNNSDSNNSQSTSLSPSMISAIVPLPDTYSPLLHSNTHHNYRPPIP--ISKNYSNTD 304
Query: 318 ---KIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSN 374
K P N F+NS ++ Q K SAS P G S S
Sbjct: 305 SKPKSNPNSNPNSNPNSNPSSFTNSNPNSYNGFEEDQLKDSPKSSASGSPTVTIGFSPSK 364
Query: 375 SS 376
+S
Sbjct: 365 NS 366
Score = 45 (20.9 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 17/86 (19%), Positives = 35/86 (40%)
Query: 298 NSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQK 357
N+N+ +S + +N + + G N N+ + S+S Y ++ +
Sbjct: 775 NNNNNNNQSSSYNNNNNNNSSSSYSNNNNGNNNSNNNNNNQSSSYNSNGYNNNNNNNNNN 834
Query: 358 LSASPGPKSPFGESNSNSSGVGTLSG 383
+ + S +NSNS+ + SG
Sbjct: 835 NNNNSYSNSGSYNNNSNSNSNNSHSG 860
Score = 44 (20.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 469 LGGMGLSRNNAGYMMNVGGRVGVGLPLN--VTDNGSPSLRMMSFPRHGPLFFGNGSYSGL 526
+G G + NN + +V N T+N S SL + ++ +G F N SY GL
Sbjct: 483 IGNSGGNSNNGSNNQLLIQKVSPNFNSNNVSTNNVSNSL-VHTYNANGH-FNSNNSYFGL 540
Query: 527 GTTSN 531
SN
Sbjct: 541 QNNSN 545
Score = 37 (18.1 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 337 SNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTLSGPQ 385
S S Q QH Q Q+ + ++ +SNSS G+ S Q
Sbjct: 1637 SRSLHQQQQQQQHQQHQQNQQQNQHQQQQNIKYNQSSNSSQSGSRSSQQ 1685
Score = 37 (18.1 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 326 QGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGE-SNSNSSGVG 379
Q + N + SNS+ + Q Q P+Q+ P + + SN + G
Sbjct: 1662 QQQQNIKYNQSSNSSQSGSRSSQQPQQQPQQQQQQQPQQQQQQNQKSNYKNKNFG 1716
>DICTYBASE|DDB_G0268266 [details] [associations]
symbol:DDB_G0268266 "RNA recognition motif-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030587
"sorocarp development" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0268266 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0003676 GO:GO:0030587
eggNOG:NOG321849 RefSeq:XP_647083.1 ProteinModelPortal:Q55GV1
EnsemblProtists:DDB0202068 GeneID:8615887 KEGG:ddi:DDB_G0268266
InParanoid:Q55GV1 OMA:FSIPKEE Uniprot:Q55GV1
Length = 689
Score = 249 (92.7 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 57/178 (32%), Positives = 95/178 (53%)
Query: 34 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVM 93
I + G V GE E RTLFVRN+ +++++++ ++F + G+I+ ++ + RG
Sbjct: 170 IKDNNGKVIGEK---EKLGRTLFVRNVAYSIKEVDIPAIFAKIGEIKKTFSLLESRGIAF 226
Query: 94 ISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDD 153
ISYYD+R A A +Q L R +DIHFSIPK+ +D N G + V N D ++ +
Sbjct: 227 ISYYDLRDAERAKNEIQGTTLDGRSIDIHFSIPKEESGLED-NAGFIHVKNRDVPLN--E 283
Query: 154 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRP 211
+R F +YG++K++ E R +EFYD+ N + + + L+ P
Sbjct: 284 VRIFFSSYGDIKDVTE--FNRDQVLVEFYDLRACEKALAEANGVKLGDQTLDLDYYTP 339
Score = 39 (18.8 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 592 DENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPS 625
+ N+ Y+ + P + N N +FIN PS
Sbjct: 617 NSNYNFNYNNISNPSNNFNNNNYNNSFINYSEPS 650
Score = 37 (18.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 619 INMVSPSHIISFYEAFNGKKWEKFNS 644
++ +P I + +A+ G+K NS
Sbjct: 334 LDYYTPKEIPAIIDAYEGRKQNNNNS 359
>DICTYBASE|DDB_G0286611 [details] [associations]
symbol:DDB_G0286611 "sulphate anion transporter
family protein" species:44689 "Dictyostelium discoideum"
[GO:0055085 "transmembrane transport" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0015116 "sulfate transmembrane transporter
activity" evidence=IEA] [GO:0008272 "sulfate transport"
evidence=IEA] [GO:0008271 "secondary active sulfate transmembrane
transporter activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001902
InterPro:IPR011547 InterPro:IPR012677 InterPro:IPR018045
Pfam:PF00916 PROSITE:PS01130 SMART:SM00360 dictyBase:DDB_G0286611
GO:GO:0016021 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000089 GO:GO:0008272 InterPro:IPR007201 Pfam:PF04059
GO:GO:0008271 Gene3D:3.30.750.24 InterPro:IPR002645 SUPFAM:SSF52091
PROSITE:PS50801 Pfam:PF01740 eggNOG:COG0659 TIGRFAMs:TIGR00815
RefSeq:XP_001733021.1 ProteinModelPortal:B0G157
EnsemblProtists:DDB0237857 GeneID:8625706 KEGG:ddi:DDB_G0286611
OMA:ILFRIEN ProtClustDB:CLSZ2846953 Uniprot:B0G157
Length = 1221
Score = 248 (92.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 47/102 (46%), Positives = 68/102 (66%)
Query: 561 DKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFIN 620
+ IISG DTRT+LMI+NIPN+ T + L A IDE + TYDFL +P+D K + GYAFIN
Sbjct: 1087 ENIISGVDTRTSLMIRNIPNRLTQQNLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1146
Query: 621 MVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALV 662
++ F++ F +W+ +N +K+ + YA IQG+ AL+
Sbjct: 1147 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL 1188
Score = 46 (21.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 114 LRRRKLDIHFSIPKDNPSEKDVNQGTL 140
L RR+ ++ I + +K+ N GTL
Sbjct: 1030 LERRRKELESEIQQQKAQQKNQNNGTL 1056
Score = 38 (18.4 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 338 NSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSS 376
N +LQ + S S LS P SNSN++
Sbjct: 115 NKKNLQNNSNIESDSSSSPSLSPIVSPSLISANSNSNNN 153
>TAIR|locus:2029647 [details] [associations]
symbol:MCT1 "AT1G37140" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012677 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR007201 Pfam:PF04059 EMBL:DQ056481 IPI:IPI00521142
RefSeq:NP_174902.1 UniGene:At.51989 ProteinModelPortal:Q4PT05
SMR:Q4PT05 EnsemblPlants:AT1G37140.1 GeneID:840631
KEGG:ath:AT1G37140 TAIR:At1g37140 HOGENOM:HOG000124801
InParanoid:Q4PT05 OMA:ICEITVA PhylomeDB:Q4PT05
ProtClustDB:CLSN2682263 ArrayExpress:Q4PT05 Genevestigator:Q4PT05
Uniprot:Q4PT05
Length = 233
Score = 193 (73.0 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 42/118 (35%), Positives = 60/118 (50%)
Query: 570 RTTLMIKNIPNKYTSKMLLAAIDE-----NHRGTYDFLYLPIDFKNKCNVGYAFINMVSP 624
RT++M+KNIPN LL +D N + +YDFLYLP+DF + N+GYAF+N S
Sbjct: 83 RTSVMVKNIPNCLGRMDLLRILDNHCRKHNEKSSYDFLYLPMDFGKRANLGYAFVNFTSS 142
Query: 625 SHIISFYEAFNGKKWEKFN-SEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIV 681
F F W+ +K+ + A+ QG+ L HF+NS P+V
Sbjct: 143 LAAERFRREFENFSWDNIGFRKKICEITVAKYQGKEELTRHFRNSRFTCHTDDYLPVV 200
>ASPGD|ASPL0000003579 [details] [associations]
symbol:AN6494 species:162425 "Emericella nidulans"
[GO:0045836 "positive regulation of meiosis" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IEA] [GO:0033620 "Mei2 nuclear dot" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004860 "protein kinase
inhibitor activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001301 InterPro:IPR007201 Pfam:PF04059
EnsemblFungi:CADANIAT00007260 HOGENOM:HOG000200448 OMA:VDETSHG
Uniprot:C8V0B7
Length = 669
Score = 179 (68.1 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 53/167 (31%), Positives = 78/167 (46%)
Query: 521 GSYSGLG---TTSNEAFTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKN 577
G ++GL T + E+ R R + C + Q +D+++I G D RTT+M++N
Sbjct: 403 GEHAGLMDWMTRAGESILPSPR-REIARC-PDLRLTNQNAVDVERIRLGLDVRTTIMLRN 460
Query: 578 IPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK 637
IPNK ML A +DE G YDF+YL I + V S + + +G
Sbjct: 461 IPNKIDQTMLKAIVDETSHGKYDFMYLRIVLAMLSSTSKIVYTYVIQS-LSKHEQGAHGT 519
Query: 638 KWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDKRCRPIVFHS 684
S+K QG+ LV F+NSS+M E RP +FH+
Sbjct: 520 ASTAIRSQK------CHTQGKDCLVQKFRNSSVMLEHPSFRPKIFHT 560
Score = 39 (18.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 338 NSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNS 375
N S+ + S P+ + A P P+SP S S
Sbjct: 330 NGTSVDDCVVEVSFFKPDVESEAYPSPQSPCSLKKSPS 367
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 164 (62.8 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 49/175 (28%), Positives = 79/175 (45%)
Query: 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-LYTACKHRGFVMISYYDIRAARTAMR 107
E +RTLFV+N+ ++ +LR +F+Q DIR + RG I + A A+
Sbjct: 376 ERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALE 435
Query: 108 ALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGT--LVVFNLDASVSNDDLRQIFGAYGEVK 165
Q ++ R + + F+ K + + LVV NL S S D L+ +F ++
Sbjct: 436 EAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAVSIR 495
Query: 166 EIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPS-----RPGGAR 215
+ + + F+EF +V N +DI G+ I+LE S R GG R
Sbjct: 496 IPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGGR 550
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 149 (57.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 51/167 (30%), Positives = 81/167 (48%)
Query: 9 ESLSIGVSKLNISDGIAG--TGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 66
++ S+ S L S G AG G++H P T+ P +H + LF+ I N+++
Sbjct: 14 DNASLSTSGLGSSPGSAGHMNGLSHSP--GNPSTI----PMKDHDAIKLFIGQIPRNLDE 67
Query: 67 LELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 119
+L+ LFE++G I L T K H+G ++Y + +A A AL + K L
Sbjct: 68 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 120 DIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
I P D+ S D L V L+ S DD+R++F A+G ++E
Sbjct: 127 PIQVK-PADSESRGDRK---LFVGMLNKQQSEDDVRRLFEAFGNIEE 169
Score = 45 (20.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 178 FIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
F+ F + N I KR+K++ RP A R
Sbjct: 435 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 473
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 116 (45.9 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 109
+FV I ++ LR +FEQ+G + TL RG ++YY +AA A AL
Sbjct: 297 MFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDAL 356
Query: 110 QNKPLRRRKLD-IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
N + LD +H I ++ N+ L V L+ + D+RQ+F +G ++E
Sbjct: 357 HNI----KTLDGMHHPIQMKPADSENRNERKLFVGMLNKKYTEADVRQLFTGHGTIEE 410
Score = 86 (35.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 46/199 (23%), Positives = 70/199 (35%)
Query: 236 HQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLA--- 292
H G + PG F P E N H SPG+G S + + A + S L
Sbjct: 589 HGYGLSPAHYLPGL--NFHHPPE-NSAHHSQHSPGIGGASAASLSAAAATAASNPLGGAP 645
Query: 293 --TPTPVNS-NHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQH 349
TPTP +S H G + P +S +A + + H S+S+
Sbjct: 646 PPTPTPTSSAGHAAGAGLLAAPSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNSSA 705
Query: 350 SQSFPEQKLS-ASPGPKSPFGESNSNSSGVGTLSGPQFLWGXXXXXXXXXXXXXXXTSSV 408
+ Q+L+ A+ P P + + +G + P G +
Sbjct: 706 TSGLHNQRLTYAAAPPPPPISTTYNMPQLIGHTATPTQPGGSSQSLTFNALW----PPNA 761
Query: 409 GHPFSSSGQG--QGFPYGS 425
P+SSS G G YG+
Sbjct: 762 ADPYSSSLSGLTNGAAYGA 780
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 146 (56.5 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 50/167 (29%), Positives = 81/167 (48%)
Query: 9 ESLSIGVSKLNISDGIAG--TGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 66
++ S+ + L S G AG G++H P T+ P +H + LF+ I N+++
Sbjct: 14 DNASLSTNGLGSSPGSAGHMNGLSHSP--GNPSTI----PMKDHDAIKLFIGQIPRNLDE 67
Query: 67 LELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 119
+L+ LFE++G I L T K H+G ++Y + +A A AL + K L
Sbjct: 68 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 120 DIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
I P D+ S D L V L+ S DD+R++F A+G ++E
Sbjct: 127 PIQVK-PADSESRGDRK---LFVGMLNKQQSEDDVRRLFEAFGNIEE 169
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 146 (56.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 50/167 (29%), Positives = 81/167 (48%)
Query: 9 ESLSIGVSKLNISDGIAG--TGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 66
++ S+ + L S G AG G++H P T+ P +H + LF+ I N+++
Sbjct: 14 DNASLSTNGLGSSPGSAGHMNGLSHSP--GNPSTI----PMKDHDAIKLFIGQIPRNLDE 67
Query: 67 LELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 119
+L+ LFE++G I L T K H+G ++Y + +A A AL + K L
Sbjct: 68 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 120 DIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
I P D+ S D L V L+ S DD+R++F A+G ++E
Sbjct: 127 PIQVK-PADSESRGDRK---LFVGMLNKQQSEDDVRRLFEAFGNIEE 169
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 178 FIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
F+ F + N I KR+K++ RP A R
Sbjct: 434 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 472
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 140 (54.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 39/133 (29%), Positives = 66/133 (49%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 111
S L+V ++ + +L LF +YGDI + T RGF I Y + A A ALQ
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRI-TVYSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 112 KPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP 171
L ++ I ++ P P + +L V + +VS DDL + F +G++++ R
Sbjct: 76 ANLNGSQIKIEYARPA-KPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL- 127
Query: 172 HKRHHKFIEFYDV 184
+R FI++Y++
Sbjct: 128 RERKTAFIDYYEM 140
Score = 57 (25.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 31/148 (20%), Positives = 59/148 (39%)
Query: 237 QVGSPVTNSPPGTW-AQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPT 295
Q+ P + PP + + S + + S+S + LSP+ + P + +S T ++
Sbjct: 719 QLPPPPSRYPPASNNPNYTSGMVHGNMQYQSQSVNMPQLSPLPNMPHNNYSMYTQGSSNH 778
Query: 296 PVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPE 355
PV+ P + P PI Q +AN + + +L + +Q + P
Sbjct: 779 PVSQ---PMVQQYQPEASMPNQNYGPIPSYQ-QANFHGVTTNQAQNLNPSQFQAAMQPPA 834
Query: 356 QKLSASPGPKSPFGESNSNSSGVGTLSG 383
K + P ++ + + G GT G
Sbjct: 835 DKANLEPQNQALRLQPMISGDGQGTTDG 862
Score = 42 (19.8 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 268 SPGLGTLSPINSNP 281
SP GT P+ SNP
Sbjct: 371 SPAQGTRRPMRSNP 384
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 39/112 (34%), Positives = 54/112 (48%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
+++ S K S K L V N+ + +N +LR F YG V E
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIE 106
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 39/112 (34%), Positives = 54/112 (48%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
+++ S K S K L V N+ + +N +LR F YG V E
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIE 106
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 119 (46.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 39/112 (34%), Positives = 54/112 (48%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
+++ S K S K L V N+ + +N +LR F YG V E
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIE 106
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 143 (55.4 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 41/172 (23%), Positives = 78/172 (45%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 111
+RTL +N++ N+ + EL+ +FE +IR + + +G I + A + Q
Sbjct: 250 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 309
Query: 112 KPLRRRKLDIHFSIPKDNPSEKDVNQGT-------LVVFNLDASVSNDDLRQIFGAYGEV 164
+ R + ++++ K E+ T LV+ NL S + + L+++F +
Sbjct: 310 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 369
Query: 165 KEIRETPH--KRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
K + + PH + + FIEF N+ +I G+ I+LE P G+
Sbjct: 370 K-VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 420
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/112 (34%), Positives = 54/112 (48%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
+++ S K S K L V N+ + +N +LR F YG V E
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIE 106
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/112 (34%), Positives = 54/112 (48%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
+++ S K S K L V N+ + +N +LR F YG V E
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIE 106
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 143 (55.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 41/172 (23%), Positives = 78/172 (45%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 111
+RTL +N++ N+ + EL+ +FE +IR + + +G I + A + Q
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 455
Query: 112 KPLRRRKLDIHFSIPKDNPSEKDVNQGT-------LVVFNLDASVSNDDLRQIFGAYGEV 164
+ R + ++++ K E+ T LV+ NL S + + L+++F +
Sbjct: 456 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 515
Query: 165 KEIRETPH--KRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
K + + PH + + FIEF N+ +I G+ I+LE P G+
Sbjct: 516 K-VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 566
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 143 (55.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 41/172 (23%), Positives = 78/172 (45%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 111
+RTL +N++ N+ + EL+ +FE +IR + + +G I + A + Q
Sbjct: 397 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 456
Query: 112 KPLRRRKLDIHFSIPKDNPSEKDVNQGT-------LVVFNLDASVSNDDLRQIFGAYGEV 164
+ R + ++++ K E+ T LV+ NL S + + L+++F +
Sbjct: 457 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 516
Query: 165 KEIRETPH--KRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
K + + PH + + FIEF N+ +I G+ I+LE P G+
Sbjct: 517 K-VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 567
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 135 (52.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 54/215 (25%), Positives = 90/215 (41%)
Query: 16 SKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQ 75
S+ ++S+G G +S G + E P ++ LFV N+ +V L LFEQ
Sbjct: 118 SEGDVSEGDESEG----DVSEGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQ 172
Query: 76 YGDIR---TLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 130
G + +Y + RGF ++ + A TA+ L R L ++ + P+ +
Sbjct: 173 AGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232
Query: 131 SEKD--VNQGTLVVF--NLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEF 181
E+ V + V+ NL V N L Q+F +G+V E R ET R F+
Sbjct: 233 PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292
Query: 182 YDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
DV + ++ G+ I++ + RR
Sbjct: 293 SDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 22/115 (19%), Positives = 59/115 (51%)
Query: 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 109
RTL+V N++ +V ++ + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEV 164
+ + +++ ++++ + + N + V +L ++ +D++ F +G++
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 135 (52.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 45/171 (26%), Positives = 80/171 (46%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHR-----GFVMISYYDIRAARTAMRAL 109
LFV N+ ++V +L+ +FE++G I + R G+ I Y A TA +L
Sbjct: 402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDD-LRQIFGAYGEVKEIR 168
+ RR L + ++ N E ++ T+ V L S ++ LR++F +G++K+
Sbjct: 462 GSIVFNRRTLRVDWA-ENCNTMES-MHSKTIFVDRLPRSFADVPILRKVFSPFGKIKDCN 519
Query: 169 ETPH----KRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLE---PSRPG 212
P+ R FI++ +V N D+ G +I++ PS+PG
Sbjct: 520 VVPNYYGQPRGFAFIDYNNVEDAEKAQRMMNEKDLKGYKIRVNFANPSKPG 570
Score = 53 (23.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 34/128 (26%), Positives = 48/128 (37%)
Query: 411 PFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPLG 470
P SS +G+G GS S H +GS G R G +P + G
Sbjct: 589 PSSSPFRGRGRGRGSMGVPPPNSQH-FGIGSVGGGFRGGRGVGGYPGDHSGIYQ-----G 642
Query: 471 GMGLSRNNAGYMMNVGGRVGV--GLPLNVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGT 528
G G R G +N G + + G P++ G P P HGP+ SG G+
Sbjct: 643 GRG-GRGVGG--VNGSGPIAMERGGPMHHQPYGPP-------PHHGPMLH----QSGYGS 688
Query: 529 TSNEAFTE 536
F++
Sbjct: 689 QMQHQFSQ 696
Score = 44 (20.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 253 FGSPVERNPLHAFSKSP----GLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASI 308
F +P + P H+ K P G S +S+P + G P NS H G+ S+
Sbjct: 563 FANPSK--PGHSLVKPPSQQSGRSHESVPSSSPFRGRGRGRGSMGVPPPNSQHF-GIGSV 619
Score = 44 (20.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 27/135 (20%), Positives = 48/135 (35%)
Query: 313 LSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESN 372
L +I + + Q + Q A Q A Q SQ +Q+ S + +G+ N
Sbjct: 836 LQKQQQIQQLQQQQQQQQQAQQQQQQQAQQQ--AQQQSQQQAQQQQSQQM--QGFYGQMN 891
Query: 373 SNSSGVGTLSGPQFLWGXXXXXXXXXXXXXXXTSSVGHPFSSSGQGQGFPYGSRHGSFIG 432
+ +S T G Q ++ H +++ QG P + ++
Sbjct: 892 NANSNKQT--GAQ-------STISPNTASATNQNNFSHQSAANWQGYFTPEQTAAWTYYA 942
Query: 433 SHHQHHVGSAPSGVS 447
HQ G +P +S
Sbjct: 943 QQHQLFPGYSPQDIS 957
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 136 (52.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 40/165 (24%), Positives = 74/165 (44%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 111
+RTL +N++ N+ + EL+ +FE +IR + K +G I + A + Q
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 453
Query: 112 KPLRRRKLDIHFSIPKDNPSEKDVNQGT-------LVVFNLDASVSNDDLRQIFGAYGEV 164
+ R + ++++ K E+ T LV+ NL S + + L ++F +
Sbjct: 454 AEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFI 513
Query: 165 KEIRETPH--KRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLE 207
K + + PH + + FIEF N+ +I G+ I+LE
Sbjct: 514 K-VPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 557
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 135 (52.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 41/171 (23%), Positives = 76/171 (44%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 111
+RTL +N++ N+ + EL+ +FE +IR + K +G I + A + Q
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 452
Query: 112 KPLRRRKLDIHFSIPKDNPSEKDVNQGT-------LVVFNLDASVSNDDLRQIFGAYGEV 164
+ R + ++++ K E+ T LV+ NL S + + L+++F +
Sbjct: 453 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 512
Query: 165 KEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
K + K + + FIEF N+ +I G+ I+LE P G+
Sbjct: 513 KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 563
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 35/173 (20%), Positives = 76/173 (43%)
Query: 44 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAA 102
+H GE S+TL + N++ + + L+ +FE+ I+ K +G+ I + A
Sbjct: 104 QHVLGE--SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDA 161
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
+ A+ + + + R + + P+ +P+ + TL V L + + L++ F
Sbjct: 162 KEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV 221
Query: 163 EVKEI--RETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+ + RET + F++F +I+G ++ L+ ++P G
Sbjct: 222 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 274
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 163 EVK 165
+V+
Sbjct: 173 QVE 175
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 117 (46.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 129 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVXXXX 188
N + D N T+ V LDA+V++D+L+ IFG +GE+ ++ P KR F+++ +
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG-FVQYANKASAE 309
Query: 189 XXXXXXNRSDINGKRIKLEPSR 210
N + + G+ I+L R
Sbjct: 310 HALSVLNGTQLGGQSIRLSWGR 331
Score = 57 (25.1 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 42 AGEHPYG-EHPSRTLFVRNINSNVEDLELRSLFEQ-YGDIRTLY-----TACKHRGFVMI 94
AGE + E P T+FV ++ V D L F+ YG ++ T + +G+ +
Sbjct: 142 AGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFV 201
Query: 95 SYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN-PSEKDVNQGT 139
+ D AM + + R + I + K+ P + + Q T
Sbjct: 202 RFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNT 247
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 135 (52.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLYTACKHRGFVMISYYDIRAARTAMR 107
E +RTLFV+N+ V + E++++FE ++R L +G I + A A+
Sbjct: 365 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 424
Query: 108 ALQNKPLRRRKLDIHFSIPKDNP-SEK---DVNQGTLVVFNLDASVSNDDLRQIFGAYGE 163
Q + R + I ++ K S+K + TL+V NL + S + L+++F
Sbjct: 425 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATS 484
Query: 164 VKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRP 211
+K + + + + F+EF N ++I G+ I+LE S P
Sbjct: 485 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP 533
Score = 45 (20.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 412 FSSSGQGQGFPYGSRHGSFIGS 433
F G G+GF G R G F GS
Sbjct: 653 FGGRGGGRGF--GGRGGGFRGS 672
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 135 (52.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLYTACKHRGFVMISYYDIRAARTAMR 107
E +RTLFV+N+ V + E++++FE ++R L +G I + A A+
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 108 ALQNKPLRRRKLDIHFSIPKDNP-SEK---DVNQGTLVVFNLDASVSNDDLRQIFGAYGE 163
Q + R + I ++ K S+K + TL+V NL + S + L+++F
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATS 486
Query: 164 VKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRP 211
+K + + + + F+EF N ++I G+ I+LE S P
Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP 535
Score = 45 (20.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 412 FSSSGQGQGFPYGSRHGSFIGS 433
F G G+GF G R G F GS
Sbjct: 655 FGGRGGGRGF--GGRGGGFRGS 674
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 127 (49.8 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 37/159 (23%), Positives = 73/159 (45%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 111
+F++N+ ++++ L F +G+I + AC +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 112 KPLRRRKLDI-HFSIPKDNPSE---KDVNQGTLVVFNLDASVSNDDLRQIFGAYGE---V 164
L RK+ + HF ++ +E + + + V NL V L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 165 KEIRETP-HKRHHKFIEFYDVXXXXXXXXXXNRSDINGK 202
K +R+ H R F+ F N +++G+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 130 (50.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 46/174 (26%), Positives = 80/174 (45%)
Query: 9 ESLSIGVSKLNISDGIAG--TGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 66
++ S+ + L S G AG G++H P T+ P +H + LF+ I N+++
Sbjct: 14 DNASLSTNGLGSSPGSAGHMNGLSHSP--GNPSTI----PMKDHDAIKLFIGQIPRNLDE 67
Query: 67 LELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRALQ--------NK 112
+L+ LFE++G I L T K H+G ++Y + +A A AL N+
Sbjct: 68 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 113 PLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
P++ + D + L V L+ S DD+R++F A+G ++E
Sbjct: 127 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Score = 45 (20.9 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 178 FIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
F+ F + N I KR+K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 130 (50.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 46/174 (26%), Positives = 80/174 (45%)
Query: 9 ESLSIGVSKLNISDGIAG--TGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 66
++ S+ + L S G AG G++H P T+ P +H + LF+ I N+++
Sbjct: 14 DNASLSTNGLGSSPGSAGHMNGLSHSP--GNPSTI----PMKDHDAIKLFIGQIPRNLDE 67
Query: 67 LELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRALQ--------NK 112
+L+ LFE++G I L T K H+G ++Y + +A A AL N+
Sbjct: 68 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 113 PLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
P++ + D + L V L+ S DD+R++F A+G ++E
Sbjct: 127 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Score = 45 (20.9 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 178 FIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
F+ F + N I KR+K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 130 (50.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 46/174 (26%), Positives = 80/174 (45%)
Query: 9 ESLSIGVSKLNISDGIAG--TGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVED 66
++ S+ + L S G AG G++H P T+ P +H + LF+ I N+++
Sbjct: 14 DNASLSTNGLGSSPGSAGHMNGLSHSP--GNPSTI----PMKDHDAIKLFIGQIPRNLDE 67
Query: 67 LELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRALQ--------NK 112
+L+ LFE++G I L T K H+G ++Y + +A A AL N+
Sbjct: 68 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 126
Query: 113 PLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
P++ + D + L V L+ S DD+R++F A+G ++E
Sbjct: 127 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Score = 45 (20.9 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 178 FIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
F+ F + N I KR+K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 116 (45.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 47/194 (24%), Positives = 79/194 (40%)
Query: 24 IAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFE---QYGDIR 80
+ G A + G+G G +L+V +++ NV D +L F Q +R
Sbjct: 17 VVNDGAATASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVR 76
Query: 81 TLYTACKHR--GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQG 138
A + G+ ++Y + A AM+ L L + + I +S +D+ + + G
Sbjct: 77 VCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYS-SRDSSARRS-GVG 134
Query: 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIR-ETPH---KRHHKFIEFYDVXXXXXXXXXX 194
L V NLD SV N L + F G + + T H R + F++F
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 195 NRSDINGKRIKLEP 208
N +N K+I + P
Sbjct: 195 NGKVLNDKQIFVGP 208
Score = 63 (27.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 29/143 (20%), Positives = 55/143 (38%)
Query: 535 TERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDEN 594
TE +E +V + KQ + + + E+ + N Y + A D+
Sbjct: 183 TEDSAKNAIEKLNGKVLNDKQ--IFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE 240
Query: 595 HR---GTYDFLYLPI-----DFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 646
+ G Y + + D K++C + F+N +P EA NGKK++ + E
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRC---FGFVNFENPEDAARAVEALNGKKFD--DKEW 295
Query: 647 VASLAYARIQGQAALVTHFQNSS 669
A + + + L ++ S
Sbjct: 296 YVGKAQKKSERELELSRRYEQGS 318
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRAL 109
LFV I+ +++ L +F +GDIR + T K+RGF + Y ++ A+ A+ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDV------NQGTLVVFNLDASVSNDD 153
N L +++ +++S K K + NQ + D NDD
Sbjct: 70 NNFELNGKRIHVNYSKTKKADHYKPIWLDEMYNQEKMKELEEDEENLNDD 119
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRAL 109
LFV I+ +++ L +F +GDIR + T K+RGF + Y ++ A+ A+ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDV------NQGTLVVFNLDASVSNDD 153
N L +++ +++S K K + NQ + D NDD
Sbjct: 70 NNFELNGKRIHVNYSKTKKADHYKPIWLDEMYNQEKMKELEEDEENLNDD 119
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 123 (48.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 127 (49.8 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 29/161 (18%), Positives = 75/161 (46%)
Query: 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 109
RTL+V N++ +V ++ + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR- 168
+ + +++ ++++ + + N + V +L ++ +D++ F +G++ + R
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 169 ----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIK 205
T + + F+ FY+ + G++I+
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 127 (49.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 29/161 (18%), Positives = 75/161 (46%)
Query: 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 109
RTL+V N++ +V ++ + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR- 168
+ + +++ ++++ + + N + V +L ++ +D++ F +G++ + R
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 169 ----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIK 205
T + + F+ FY+ + G++I+
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 122 (48.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 43/153 (28%), Positives = 73/153 (47%)
Query: 21 SDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR 80
++G+ GI+H T+ P +H + LF+ I N+++ +LR LFE++G I
Sbjct: 20 TNGLVN-GISHTHSPASCATI----PMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIY 74
Query: 81 TLYTACK------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNPSEK 133
L T K H+G ++Y +A A AL + K L I P D+ S
Sbjct: 75 EL-TVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVK-PADSESRG 132
Query: 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
+ + L V L+ DD+R++F ++G ++E
Sbjct: 133 EDRK--LFVGMLNKQQCEDDVRRLFESFGSIEE 163
Score = 52 (23.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 42/186 (22%), Positives = 67/186 (36%)
Query: 299 SNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAY-QHSQSFPEQK 357
S +PG +S L ++T K I + Q A Q +F N +LQ AY ++Q +
Sbjct: 198 SQTMPGASSSLVVKFADTDKERTIRRMQQMAGQMG-IF-NPMALQFGAYGAYAQVQQQAA 255
Query: 358 LSASPGPK---SPFGE-SNSNSSGVGTLSG-PQFLWGXXXXXXXXXXXXXXXTSSVGHPF 412
L AS G SP + + + T++G P +S+ P
Sbjct: 256 LMASVGQGGYLSPMAAFAAAQMQHMATINGLPGAPMTPTSGGSTPPGITAPTVTSIPSPI 315
Query: 413 SSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPLGGM 472
S +G F G G AP+ +P E F GG+
Sbjct: 316 SVNG-------------FTGLPPPQANGQAPAEAMFTNGIHPYPVLQEVVFREDSEKGGL 362
Query: 473 GLSRNN 478
G+++ +
Sbjct: 363 GVAQRS 368
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 135 (52.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLYTACKHRGFVMISYYDIRAARTAMR 107
E +RTLFV+N+ V + E++++FE ++R L +G I + A A+
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 108 ALQNKPLRRRKLDIHFSIPKDNP-SEK---DVNQGTLVVFNLDASVSNDDLRQIFGAYGE 163
Q + R + I ++ K S+K + TL+V NL + S + L+++F
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATS 486
Query: 164 VKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRP 211
+K + + + + F+EF N ++I G+ I+LE S P
Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP 535
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 412 FSSSGQGQGFPYGSRHGSFIG 432
F G G+GF G R G F G
Sbjct: 658 FGGRGGGRGF--GGRGGGFRG 676
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 129 (50.5 bits), Expect = 0.00013, P = 0.00013
Identities = 44/181 (24%), Positives = 79/181 (43%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 393 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 452
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPK----DNPSEKDVN-QG---TLVVFNLDASVSNDDL 154
+ Q + R + ++++ K D+ K+ G TLV+ NL S + + L
Sbjct: 453 EKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 512
Query: 155 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+++F +K + K + + FIEF N+ +I G+ I+LE P G
Sbjct: 513 QEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 572
Query: 214 A 214
+
Sbjct: 573 S 573
Score = 123 (48.4 bits), Expect = 0.00060, P = 0.00059
Identities = 33/165 (20%), Positives = 73/165 (44%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 554
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIF-GAY-GEVKEIR 168
+ + R + + P+ +P+ + TL V L + + L++ F G+ + R
Sbjct: 555 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 614
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 615 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 659
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 112 (44.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 38/170 (22%), Positives = 74/170 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 109
+FV + E F +YG+I + RGF ++Y D ++
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-- 101
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--- 166
N + ++++I +IP+ + S D + V + +SV +D+ ++ F +GE+KE
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQI 161
Query: 167 IRE--TPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRI---KLEPSRP 211
+R+ T R F+ + NR +++G ++ K EP +P
Sbjct: 162 MRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKP 211
Score = 59 (25.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/84 (29%), Positives = 31/84 (36%)
Query: 409 GHPFSSSGQGQGFPYGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPVP 468
G P+ S G G G G R G + G + G G G + P ++
Sbjct: 248 GGPYKSGG-GYG---GGRSGGY-GGYGGEFGGYGGGGYG--GGVGPYRGEPALGYSGRY- 299
Query: 469 LGGMGLSRNNAGYMMNVGGRVGVG 492
GG G N GY M GG G G
Sbjct: 300 -GGGGGGYNRGGYSMGGGGGYGGG 322
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 116 (45.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 34 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNV--EDLE--LRSLFEQYGDIRTL--YTACK 87
++ VG A E G P+ T+++ N+N + E+L+ LR++F Q+G I + + K
Sbjct: 5 VAAAVGGGAPEEN-GAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLK 63
Query: 88 HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLV 141
H+G + + D+ +A A++++Q+ P + + I ++ K + K GT V
Sbjct: 64 HKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKA--DGTFV 115
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 183
V L V NL + L+ +F Y KE+R K F+E+ D
Sbjct: 176 VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGD 224
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 116 (45.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 34 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNV--EDLE--LRSLFEQYGDIRTL--YTACK 87
++ VG A E G P+ T+++ N+N + E+L+ LR++F Q+G I + + K
Sbjct: 5 VAAAVGGGAPEEN-GAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLK 63
Query: 88 HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLV 141
H+G + + D+ +A A++++Q+ P + + I ++ K + K GT V
Sbjct: 64 HKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKA--DGTFV 115
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 183
V L V NL + L+ +F Y KE+R K F+E+ D
Sbjct: 176 VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGD 224
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 128 (50.1 bits), Expect = 0.00017, P = 0.00017
Identities = 47/175 (26%), Positives = 80/175 (45%)
Query: 51 PSRTLFVRNI-NSNVEDLELRSLFEQYGDIRT-LYTAC---------KHRGFVMISYYDI 99
P+ LFV NI S +D + E++G + LY K+RGF + Y
Sbjct: 243 PNLRLFVGNIPKSKGKD----EILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESH 298
Query: 100 RAARTAMRALQNKPLRRRKLDI--HFSIPKDNPSEKDVNQ-GTLVVFNLDASVSNDDLRQ 156
+AA A R L ++ DI ++ P++ P E+ +++ L V NL VS D L++
Sbjct: 299 KAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKE 358
Query: 157 IFGAYGEVKEIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRP 211
F YG+V+ +++ + + FI F D N +I I++ ++P
Sbjct: 359 QFEQYGKVERVKKI---KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKP 410
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 37/159 (23%), Positives = 73/159 (45%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 111
+F++N+ ++++ L F +G+I + AC +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 112 KPLRRRKLDI-HFSIPKDNPSE---KDVNQGTLVVFNLDASVSNDDLRQIFGAYGE---V 164
L RK+ + HF ++ +E + + + V NL V L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 165 KEIRETP-HKRHHKFIEFYDVXXXXXXXXXXNRSDINGK 202
K +R+ H R F+ F N +++G+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 33/165 (20%), Positives = 73/165 (44%)
Query: 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 105
E RTL+V N++ +V + + +F Q G ++ G + + +Y+ R A A
Sbjct: 5 EDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAA 64
Query: 106 MRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK 165
+ A+ + + + + ++++ + + N + V +L +S DD+R F +G++
Sbjct: 65 LAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKIS 124
Query: 166 EIR-----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIK 205
+ R T + + FI F + N + G++I+
Sbjct: 125 DARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIR 169
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 112 (44.5 bits), Expect = 0.00019, P = 0.00019
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 101
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 102 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSEKDVNQG 138
A A+ L K + R+++I F+ + P++ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 127 (49.8 bits), Expect = 0.00022, P = 0.00022
Identities = 45/181 (24%), Positives = 77/181 (42%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ E +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 383 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADA 442
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPK----DNPSEKDVN-QG---TLVVFNLDASVSNDDL 154
Q + R + ++++ K D K+ G TLV+ NL S + + L
Sbjct: 443 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 502
Query: 155 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+++F +K + K + + FIEF N+ +I G+ I+LE P G
Sbjct: 503 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 562
Query: 214 A 214
+
Sbjct: 563 S 563
Score = 121 (47.7 bits), Expect = 0.00096, P = 0.00096
Identities = 32/165 (19%), Positives = 72/165 (43%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--R 168
+ + R + + P+ +P+ + TL V L + + L++ F + + R
Sbjct: 545 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 604
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 605 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 127 (49.8 bits), Expect = 0.00022, P = 0.00022
Identities = 45/181 (24%), Positives = 77/181 (42%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ E +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 384 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADA 443
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPK----DNPSEKDVN-QG---TLVVFNLDASVSNDDL 154
Q + R + ++++ K D K+ G TLV+ NL S + + L
Sbjct: 444 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 503
Query: 155 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+++F +K + K + + FIEF N+ +I G+ I+LE P G
Sbjct: 504 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 563
Query: 214 A 214
+
Sbjct: 564 S 564
Score = 121 (47.7 bits), Expect = 0.00096, P = 0.00096
Identities = 32/165 (19%), Positives = 72/165 (43%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--R 168
+ + R + + P+ +P+ + TL V L + + L++ F + + R
Sbjct: 546 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 605
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 606 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 650
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 127 (49.8 bits), Expect = 0.00022, P = 0.00022
Identities = 45/181 (24%), Positives = 77/181 (42%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ E +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 385 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADA 444
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPK----DNPSEKDVN-QG---TLVVFNLDASVSNDDL 154
Q + R + ++++ K D K+ G TLV+ NL S + + L
Sbjct: 445 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 504
Query: 155 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+++F +K + K + + FIEF N+ +I G+ I+LE P G
Sbjct: 505 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 564
Query: 214 A 214
+
Sbjct: 565 S 565
Score = 121 (47.7 bits), Expect = 0.00096, P = 0.00096
Identities = 32/165 (19%), Positives = 72/165 (43%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 546
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--R 168
+ + R + + P+ +P+ + TL V L + + L++ F + + R
Sbjct: 547 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 606
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 607 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 39/161 (24%), Positives = 70/161 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 111
+F++N++ ++++ L F +G I + +G+ + Y D RAA A+ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNG 159
Query: 112 KPLRRRKLDI-HFSIPKDNPSE---KDVNQGTLVVFNLDASVSNDDLRQIFGAYGE---V 164
K LR L + F KD +E K + + N + ++ LR +F YG+ V
Sbjct: 160 KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSV 219
Query: 165 KEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRI 204
K +++ K + F+ F N DING+ I
Sbjct: 220 KVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 99 (39.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 38/145 (26%), Positives = 67/145 (46%)
Query: 53 RTLFVRNINSNVEDLELRSLFEQYGD------IRTLYTACKHRGFVMISYYDIRAARTAM 106
R LF+ ++S + L++ ++Q+G+ IR L + K RGF +++ + AM
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQ-KSRGFGFVTFSSVAEVDAAM 79
Query: 107 RALQNKPLRRRKLDIHFSIPKDNPSEKD---VNQGTLVVFNLDASVSNDDLRQIFGAYGE 163
A + + R +D ++ ++ SEK VN L V + LR+ F YG+
Sbjct: 80 AARPHS-IDGRVVDPKRAVSREK-SEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGK 137
Query: 164 VKEI-----RETPHKRHHKFIEFYD 183
+ I R++ KR F+ F D
Sbjct: 138 IDAIEIITDRQSGKKRGFGFVTFDD 162
Score = 68 (29.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 27/86 (31%), Positives = 35/86 (40%)
Query: 409 GHPFSSSGQGQGFP-YGSRHGSFIGSHHQHHVGSAPSGVSLDRNFGFFPESPETSFTNPV 467
G+P G G+P YG G + G + SG NFG + + P S P+
Sbjct: 258 GYPCYGGGNFGGYPCYGGGGGEYAGRRPGYGNQWEFSGGGYGNNFGNYDQQP--SNYGPM 315
Query: 468 PLGGMGLSRNN-AGYMMNVGGRVGVG 492
G G+ RN A Y GG G G
Sbjct: 316 RNGIFGVGRNIVAPYG---GGNYGPG 338
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 104 (41.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 34/130 (26%), Positives = 63/130 (48%)
Query: 47 YGEH---PSRT-LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKH-----RGFVMISYY 97
YGE P +FV + ++++ +LR +FE+YG + ++ +G +++Y
Sbjct: 347 YGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFY 406
Query: 98 DIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQ 156
AA A AL N K L I P D+ + N+ L V L+ ++ +D+R+
Sbjct: 407 TRHAALKAQDALHNVKTLNGMYHPIQMK-PADSENR---NERKLFVGMLNKKLNENDVRK 462
Query: 157 IFGAYGEVKE 166
+F +G ++E
Sbjct: 463 LFEVHGAIEE 472
Score = 72 (30.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 32/118 (27%), Positives = 49/118 (41%)
Query: 270 GLGTLSPINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRA 329
GLG ++ A + + GL TP V + L +A++ P LSN A G A
Sbjct: 606 GLGAQQSSSATDTSAVA-AAGLLTPMTVQN--LAAIAAMTQPSLSNAAAAAAAATSPGSA 662
Query: 330 NQTNH--MFSNSASLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGVGTLSGPQ 385
TN + + + +AY + + Q SAS SP S + S+ +G Q
Sbjct: 663 QLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALSTSPLA-SVALSAAAAAAAGKQ 719
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 129 (50.5 bits), Expect = 0.00027, P = 0.00027
Identities = 47/177 (26%), Positives = 79/177 (44%)
Query: 54 TLFVRNINSNVEDLELRSLFEQYGDIRTL-YTACK---HRGFVMISYYDIRAARTAMRAL 109
TLFV N ++ +R LF +YG+I + + + K HR F + + AA +A+ AL
Sbjct: 906 TLFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSAL-AL 964
Query: 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLV------VFNLDASVSNDDLRQIFGAYGE 163
+ +H + +PS K G + V N++ S S DDL+++F +G
Sbjct: 965 DGSAVGN---GLHLVVKISDPSRKQDRNGPIYEGREIHVSNVNWSASEDDLKELFSRFGT 1021
Query: 164 VKEIRETPHKRHHKFIEF-YDVXXX---XXXXXXXNRSDINGKRIKLEPSRPGGARR 216
V+ +R P K F Y V + + G+ + ++ S P GA+R
Sbjct: 1022 VELVR-LPRKVDGGSKGFGYVVFSSKEEATAALAMHEQEFRGRPLHVKVSAPQGAKR 1077
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 41/176 (23%), Positives = 76/176 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGD-------IRTLYTACKHRGFVMISYYDIRAARTAMR 107
LF+ NI N + E R + E G I+ ++RGF + YY+ A + +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 108 AL--QNKPLRRRKLDIHFSIPKDNP--SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE 163
+ N L + ++ PK +P S L V N+ + S + L+++F +GE
Sbjct: 258 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGE 317
Query: 164 VKEIRETPHK---RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
V +I P K R F+ + + R ++NG+ +++ ++P R+
Sbjct: 318 VTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 127 (49.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 40/167 (23%), Positives = 76/167 (45%)
Query: 49 EHPSRTLFVRNINSNV-EDLELRSLFEQYGDIRTLYTACKHRG---FVMISYYDIRAART 104
E +TL+V N++S+V EDL L +LF G +++ + G + I Y + +AA T
Sbjct: 3 ESQPKTLYVGNLDSSVSEDL-LIALFSTMGPVKSC-KIIREPGNDPYAFIEYSNYQAATT 60
Query: 105 AMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGT-LVVFNLDASVSNDDLRQIFGAYGE 163
A+ A+ + +++ ++++ N + D++ + V +L + + LR+ F +GE
Sbjct: 61 ALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGE 120
Query: 164 VKEIR--ETPHKRHHK---FIEFYDVXXXXXXXXXXNRSDINGKRIK 205
+ R PH K F+ F N I + I+
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIR 167
Score = 41 (19.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 411 PFSSSGQGQGFPYGSRHGSFIGSHHQH 437
P GQG G G +GS + +H
Sbjct: 181 PSKGGGQGGGMGGGPGNGSGVKGSQRH 207
Score = 38 (18.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 323 GKDQGRANQTNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPKSP 367
GK+ G N N++ N+A+ AA + + + + G P
Sbjct: 292 GKENGGDNSANNL--NAAAAAAAASANVAAVAAANAAVAAGAGMP 334
>WB|WBGene00017778 [details] [associations]
symbol:psf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 EMBL:FO081045 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 KO:K13219
UniGene:Cel.18121 GeneID:175844 KEGG:cel:CELE_F25B5.7 CTD:175844
NextBio:889920 RefSeq:NP_498295.3 ProteinModelPortal:B3GWA1
SMR:B3GWA1 STRING:B3GWA1 PRIDE:B3GWA1 EnsemblMetazoa:F25B5.7a
WormBase:F25B5.7a HOGENOM:HOG000018765 InParanoid:B3GWA1
OMA:ERMIPRT ArrayExpress:B3GWA1 Uniprot:B3GWA1
Length = 562
Score = 108 (43.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRA-ARTAMRALQNKP 113
LFV N+ + V++ EL+ LF +GDI Y + K GF + D RA A +A A+ +
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRL-DTRAHAESAKEAIDGRI 174
Query: 114 LRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK 165
+ R++ + F+ V+ + V L +VSN+ L F +G+V+
Sbjct: 175 IHGRQVRVRFA----------VHGAAIRVKELSPTVSNEMLYHAFSHFGDVE 216
Score = 63 (27.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 36/116 (31%), Positives = 43/116 (37%)
Query: 438 HVGS---APSGVSLDRNFGF-FPESPETSF---TNPVPL-GGMGLSRNNAGYMMNVGGRV 489
H GS P G FG F ++P+ F T P PL GG G R G M G
Sbjct: 399 HGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGGPPGHG 458
Query: 490 GVGLPL-NVTDNGSPSLRMMSFPRHGPLFFGNGSYSGLGTTSNEAFTERGRTRRVE 544
G+G P + G P M P G G G G G GR+ +E
Sbjct: 459 GMGGPPGHGGQGGPPGHGGMGGPPPGQ--GGPGGPGGPGGPGGMLPKSHGRSNMIE 512
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 44/155 (28%), Positives = 69/155 (44%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHHKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVCINVEASKNKSKASTK------LHVGNISPTCTNLELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPS 209
+ F+ + ++ GKR++++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLS 146
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 112 (44.5 bits), Expect = 0.00032, P = 0.00032
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 101
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 102 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSEKDVNQG 138
A A+ L K + R+++I F+ + P++ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>UNIPROTKB|Q2KJ42 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=ISS]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0042802 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004 CTD:4841
HOGENOM:HOG000231095 HOVERGEN:HBG009801 KO:K13214 OrthoDB:EOG4ZCT50
EMBL:DAAA02072840 EMBL:BC105532 IPI:IPI00699994
RefSeq:NP_001040019.1 UniGene:Bt.37860 SMR:Q2KJ42
Ensembl:ENSBTAT00000016122 GeneID:615175 KEGG:bta:615175
InParanoid:Q2KJ42 NextBio:20899485 Uniprot:Q2KJ42
Length = 470
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 163 EVK 165
+V+
Sbjct: 172 QVE 174
>UNIPROTKB|F1PTP3 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 CTD:4841 KO:K13214
OMA:NQQYHKE EMBL:AAEX03026487 RefSeq:XP_849110.1
ProteinModelPortal:F1PTP3 Ensembl:ENSCAFT00000027037 GeneID:612773
KEGG:cfa:612773 Uniprot:F1PTP3
Length = 470
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 163 EVK 165
+V+
Sbjct: 172 QVE 174
>UNIPROTKB|F1Q0F6 [details] [associations]
symbol:F1Q0F6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03010245
ProteinModelPortal:F1Q0F6 Ensembl:ENSCAFT00000005152 OMA:LEFEMES
Uniprot:F1Q0F6
Length = 470
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 163 EVK 165
+V+
Sbjct: 172 QVE 174
>UNIPROTKB|Q15233 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0042382 "paraspeckles"
evidence=IDA] [GO:0005634 "nucleus" evidence=TAS] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0016607 GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0006310 GO:GO:0016363
EMBL:CH471132 Pathway_Interaction_DB:circadianpathway GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586 EMBL:L14599
EMBL:U89867 EMBL:Y11289 EMBL:Y11290 EMBL:Y11291 EMBL:Y11292
EMBL:Y11293 EMBL:Y11294 EMBL:Y11295 EMBL:Y11296 EMBL:Y11297
EMBL:Y11298 EMBL:U02493 EMBL:AK297144 EMBL:CR456761 EMBL:AL590762
EMBL:BC002364 EMBL:BC003129 EMBL:BC012141 EMBL:BC028299
EMBL:BC069616 EMBL:BC069639 IPI:IPI00304596 IPI:IPI00922367
PIR:G01211 PIR:S29769 PIR:S41768 RefSeq:NP_001138880.1
RefSeq:NP_001138881.1 RefSeq:NP_001138882.1 RefSeq:NP_031389.3
UniGene:Hs.533282 UniGene:Hs.700344 PDB:3SDE PDBsum:3SDE
ProteinModelPortal:Q15233 SMR:Q15233 DIP:DIP-29951N IntAct:Q15233
MINT:MINT-1131452 STRING:Q15233 PhosphoSite:Q15233 DMDM:67469924
REPRODUCTION-2DPAGE:IPI00304596 SWISS-2DPAGE:Q15233 PaxDb:Q15233
PeptideAtlas:Q15233 PRIDE:Q15233 DNASU:4841 Ensembl:ENST00000276079
Ensembl:ENST00000373841 Ensembl:ENST00000373856
Ensembl:ENST00000535149 GeneID:4841 KEGG:hsa:4841 UCSC:uc004dzn.3
CTD:4841 GeneCards:GC0XP070503 HGNC:HGNC:7871 HPA:CAB022069
MIM:300084 neXtProt:NX_Q15233 PharmGKB:PA31680 HOGENOM:HOG000231095
HOVERGEN:HBG009801 InParanoid:Q15233 KO:K13214 OMA:NQQYHKE
OrthoDB:EOG4ZCT50 PhylomeDB:Q15233 GenomeRNAi:4841 NextBio:18654
PMAP-CutDB:Q15233 ArrayExpress:Q15233 Bgee:Q15233 CleanEx:HS_NONO
Genevestigator:Q15233 GermOnline:ENSG00000147140 Uniprot:Q15233
Length = 471
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 163 EVK 165
+V+
Sbjct: 173 QVE 175
>UNIPROTKB|I3LSU1 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE Ensembl:ENSSSCT00000031783
Uniprot:I3LSU1
Length = 471
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 163 EVK 165
+V+
Sbjct: 173 QVE 175
>MGI|MGI:1855692 [details] [associations]
symbol:Nono "non-POU-domain-containing, octamer binding
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0042802 "identical protein binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1855692 GO:GO:0005730 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0006310 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOVERGEN:HBG009801 KO:K13214
OrthoDB:EOG4ZCT50 EMBL:S64860 EMBL:AK004830 EMBL:AK013444
EMBL:AK028338 EMBL:BC005465 EMBL:BC083074 IPI:IPI00320016
IPI:IPI00471251 RefSeq:NP_001239447.1 RefSeq:NP_075633.2
UniGene:Mm.280069 PDB:2CPJ PDB:2RS8 PDBsum:2CPJ PDBsum:2RS8
ProteinModelPortal:Q99K48 SMR:Q99K48 IntAct:Q99K48 STRING:Q99K48
PhosphoSite:Q99K48 PaxDb:Q99K48 PRIDE:Q99K48
Ensembl:ENSMUST00000033673 GeneID:53610 KEGG:mmu:53610
UCSC:uc009txr.2 InParanoid:Q99K48 ChiTaRS:NONO
EvolutionaryTrace:Q99K48 NextBio:310319 Bgee:Q99K48
Genevestigator:Q99K48 GermOnline:ENSMUSG00000031311 Uniprot:Q99K48
Length = 473
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 68 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 124
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 125 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 174
Query: 163 EVK 165
+V+
Sbjct: 175 QVE 177
>RGD|1549738 [details] [associations]
symbol:Nono "non-POU domain containing, octamer-binding"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1549738 GO:GO:0005730 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006310 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:BC089880 IPI:IPI00205912 RefSeq:NP_001012356.1 UniGene:Rn.8381
ProteinModelPortal:Q5FVM4 SMR:Q5FVM4 IntAct:Q5FVM4 STRING:Q5FVM4
PhosphoSite:Q5FVM4 PRIDE:Q5FVM4 Ensembl:ENSRNOT00000004911
GeneID:317259 KEGG:rno:317259 UCSC:RGD:1549738 InParanoid:Q5FVM4
NextBio:671515 Genevestigator:Q5FVM4 GermOnline:ENSRNOG00000003689
Uniprot:Q5FVM4
Length = 476
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 71 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 127
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 128 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 177
Query: 163 EVK 165
+V+
Sbjct: 178 QVE 180
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 34/159 (21%), Positives = 72/159 (45%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACK-H--RGFVMISYYDIRAARTAMRALQN 111
+F++N+ ++++ L F +G+I + C H RGF + + AA+ A+R +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNG 160
Query: 112 KPLRRRKLDI-HFSIPKDNPSE---KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI 167
L RK+ + HF ++ +E + + + V NL V L+ +F +G++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSV 220
Query: 168 R----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGK 202
+ ++ H R F+ F N +++G+
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGR 259
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 114 (45.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 33/117 (28%), Positives = 63/117 (53%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQ 110
+FV+N+ +V + L+ +F+++G+I + A K RG+ + + AA A++ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 111 NKPLRRRKLDIHFSIPKDN---PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEV 164
+ + +++ + + K + P EK N L + NLDA VS D LR+ F +G++
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPEEKYTN---LYMKNLDADVSEDLLREKFAEFGKI 227
Score = 57 (25.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 252 QFGSPVE-RNPLHAFSKSPGLGTLSPI---NSNPLHAFSKSTGL-ATPTPVNSNHLPGLA 306
QFG+ VE R + S +PG T +P+ N++P + + + + S++ A
Sbjct: 392 QFGNRVEARKSSSSASVNPG--TYAPLYYTNTHPGMVYQSYPLMWKSANMIGSSYPNSEA 449
Query: 307 SILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFP 354
PP ++N AP + R N+ + N+ S YQ +Q P
Sbjct: 450 VTYPPMVAN----AP---SKNRQNRIGKLDRNAVSYVPNVYQSTQMLP 490
Score = 56 (24.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 574 MIKNIPNKYTSKMLLAAIDENHR------GTYDFLYLPIDFKNKCNVGYAFINMVSPSHI 627
MI + N Y + +A +E R GT L D K K G+ F+ +P
Sbjct: 299 MIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK-GFGFVCFSTPEEA 357
Query: 628 ISFYEAFNGK 637
I + F+G+
Sbjct: 358 IDAVKTFHGQ 367
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 115 (45.5 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 42/200 (21%), Positives = 87/200 (43%)
Query: 19 NISDGIAGTGIAHYPISNGV-GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG 77
N + G+A G A + G A + + +L+V ++++ V D +L F Q G
Sbjct: 10 NANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAG 69
Query: 78 DIRTL-----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 132
+ ++ T + G+ ++Y + A A+ L L R + + +S+ +D PS
Sbjct: 70 QVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSV-RD-PSL 127
Query: 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK--EIRETP--HKRHHKFIEFYDVXXXX 188
+ G + + NLD S+ + L + F A+G + ++ P + + F+++
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 189 XXXXXXNRSDINGKRIKLEP 208
N +N K++ + P
Sbjct: 188 GAIDKLNGMLLNDKQVYVGP 207
Score = 57 (25.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 25/112 (22%), Positives = 44/112 (39%)
Query: 565 SGEDTR-TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS 623
SGE + T + +KN+ + + L E G + D + K G+ F+N +
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEF--GVTTSCVIMRDGEGKSK-GFGFVNFEN 273
Query: 624 PSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSSLMNEDK 675
+A NGK ++ + E A + + + L F+ S DK
Sbjct: 274 SDDAARAVDALNGKTFD--DKEWFVGKAQKKSERETELKQKFEQSLKEAADK 323
>UNIPROTKB|G3N361 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE EMBL:DAAA02072840
Ensembl:ENSBTAT00000063337 Uniprot:G3N361
Length = 528
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 39/123 (31%), Positives = 61/123 (49%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 123 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 179
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG 162
A L N PLR ++L + F+ + +L V NL VSN+ L + F +G
Sbjct: 180 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 229
Query: 163 EVK 165
+V+
Sbjct: 230 QVE 232
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 124 (48.7 bits), Expect = 0.00041, P = 0.00041
Identities = 38/164 (23%), Positives = 75/164 (45%)
Query: 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHR-----GFVMISYYDIRAART 104
HP+ +L+ +++ V + L LF+ ++ ++ C+ + G+ I++ + A
Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSV-RVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 105 AMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEV 164
AM AL PL R + I S +PS + +G + + NLDAS+ N L + F ++G +
Sbjct: 105 AMEALNYTPLFDRPIRIMLS--NRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTI 162
Query: 165 KEIRE----TPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRI 204
+ T + + F++F N +N K++
Sbjct: 163 LSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 97 (39.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 51 PSRTLFVRNINSNVEDLELR----SLFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 103
P++T+++ N+N ++ EL+ ++F Q+G DI L T K RG + + +I +A
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTL-KMRGQAFVIFKEIGSAS 63
Query: 104 TAMRALQNKPLRRRKLDIHFS 124
A+R +Q P + + I +S
Sbjct: 64 NALRTMQGFPFYDKPMQIAYS 84
Score = 60 (26.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 124 SIPKDNPS---EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIE 180
S NP+ E+ NQ L + NL + L +F + KE+R P++ F+E
Sbjct: 126 SAENSNPNAQTEQPPNQ-ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 184
Query: 181 F 181
F
Sbjct: 185 F 185
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 124 (48.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 39 (18.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 341 SLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGV 378
++ AA + ++ EQ +S P +S S+ NS+ V
Sbjct: 231 AVAAAAAASAYNYAEQSMSHLPQVQSTAVTSHLNSTSV 268
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 124 (48.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 39 (18.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 307 SILPPHLSNTGKIAPIGKDQGRANQ-TNHMFSNSASLQGAAYQHSQSFPEQKLSASPGPK 365
++ PP+ G+ G + + + ++ AA + ++ EQ +S P +
Sbjct: 196 AVRPPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASAYNYAEQTMSHLPQVQ 255
Query: 366 SPFGESNSNSSGV 378
S S+ NS+ V
Sbjct: 256 STAVTSHLNSTSV 268
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 120 (47.3 bits), Expect = 0.00046, P = 0.00046
Identities = 43/181 (23%), Positives = 78/181 (43%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 37 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 96
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSE----KDVN-QG---TLVVFNLDASVSNDDL 154
+ Q + R + ++++ K + K+ G TLV+ NL S + + L
Sbjct: 97 EKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETL 156
Query: 155 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+++F +K + K + + FIEF N+ +I G+ I+LE P G
Sbjct: 157 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 216
Query: 214 A 214
+
Sbjct: 217 S 217
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 33/165 (20%), Positives = 72/165 (43%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N+ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 198
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIF-GAY-GEVKEIR 168
+ + R + + P+ +P+ + TL V L + + L++ F G+ + R
Sbjct: 199 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDR 258
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 259 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 303
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 125 (49.1 bits), Expect = 0.00046, P = 0.00046
Identities = 36/154 (23%), Positives = 69/154 (44%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQ 110
+FV+N++ ++++ L F +G+I + A K + + + Y D +A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 170
L + + + I K + D L V N SV+ LRQ+F YGE+ +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK 225
Query: 171 PHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRI 204
++ KF F + + ++NGK+I
Sbjct: 226 MDNKNRKFC-FINYADAESAKNAMD--NLNGKKI 256
Score = 110 (43.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 37/172 (21%), Positives = 73/172 (42%)
Query: 50 HPS---RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC------KHRGFVMISYYDIR 100
HPS +L+V ++N +V + L +F G + ++ C K G+ ++Y+++
Sbjct: 10 HPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSI-RVCRDSVTRKSLGYAYVNYHNLA 68
Query: 101 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGA 160
A A+ L ++ + + +S +D PS + G + V NLD S+ N L F
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 161 YGEVKEIR----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEP 208
+G + + E + + F+ + D N + K + + P
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 63 (27.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 27/95 (28%), Positives = 39/95 (41%)
Query: 547 GSQVDSKKQYQLDLDKII--SGEDTR-TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLY 603
G Q+ SK Y K + DT+ T L +KN P+ T L N G +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLF--NPYGEITSMI 223
Query: 604 LPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 638
+ +D KN+ + FIN + + NGKK
Sbjct: 224 VKMDNKNR---KFCFINYADAESAKNAMDNLNGKK 255
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 125 (49.1 bits), Expect = 0.00046, P = 0.00046
Identities = 36/154 (23%), Positives = 69/154 (44%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQ 110
+FV+N++ ++++ L F +G+I + A K + + + Y D +A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 170
L + + + I K + D L V N SV+ LRQ+F YGE+ +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK 225
Query: 171 PHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRI 204
++ KF F + + ++NGK+I
Sbjct: 226 MDNKNRKFC-FINYADAESAKNAMD--NLNGKKI 256
Score = 110 (43.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 37/172 (21%), Positives = 73/172 (42%)
Query: 50 HPS---RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC------KHRGFVMISYYDIR 100
HPS +L+V ++N +V + L +F G + ++ C K G+ ++Y+++
Sbjct: 10 HPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSI-RVCRDSVTRKSLGYAYVNYHNLA 68
Query: 101 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGA 160
A A+ L ++ + + +S +D PS + G + V NLD S+ N L F
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 161 YGEVKEIR----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEP 208
+G + + E + + F+ + D N + K + + P
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 63 (27.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 27/95 (28%), Positives = 39/95 (41%)
Query: 547 GSQVDSKKQYQLDLDKII--SGEDTR-TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLY 603
G Q+ SK Y K + DT+ T L +KN P+ T L N G +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLF--NPYGEITSMI 223
Query: 604 LPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 638
+ +D KN+ + FIN + + NGKK
Sbjct: 224 VKMDNKNR---KFCFINYADAESAKNAMDNLNGKK 255
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 101
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 102 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSEKDVNQG 138
A A+ L K + R+++I F+ + P++ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 101
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 102 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSEKDVNQG 138
A A+ L K + R+++I F+ + P++ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 123 (48.4 bits), Expect = 0.00049, P = 0.00049
Identities = 33/165 (20%), Positives = 73/165 (44%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 400 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 459
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIF-GAY-GEVKEIR 168
+ + R + + P+ +P+ + TL V L + + L++ F G+ + R
Sbjct: 460 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 519
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 520 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 564
Score = 121 (47.7 bits), Expect = 0.00081, P = 0.00081
Identities = 44/177 (24%), Positives = 77/177 (43%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ + +RTL +N+ V EL+ +FE +IR + K +G I+Y + +
Sbjct: 305 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 361
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVN-QG---TLVVFNLDASVSNDDLRQIF 158
A + L+ K +D+ K+ G TLV+ NL S + + L+++F
Sbjct: 362 ADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 421
Query: 159 GAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
+K + K + + FIEF N+ +I G+ I+LE P G+
Sbjct: 422 EKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 478
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 33/165 (20%), Positives = 73/165 (44%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 405 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIF-GAY-GEVKEIR 168
+ + R + + P+ +P+ + TL V L + + L++ F G+ + R
Sbjct: 465 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 524
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 525 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 569
Score = 121 (47.7 bits), Expect = 0.00082, P = 0.00082
Identities = 44/177 (24%), Positives = 77/177 (43%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ + +RTL +N+ V EL+ +FE +IR + K +G I+Y + +
Sbjct: 310 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 366
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVN-QG---TLVVFNLDASVSNDDLRQIF 158
A + L+ K +D+ K+ G TLV+ NL S + + L+++F
Sbjct: 367 ADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 426
Query: 159 GAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
+K + K + + FIEF N+ +I G+ I+LE P G+
Sbjct: 427 EKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 483
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 33/165 (20%), Positives = 73/165 (44%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 405 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIF-GAY-GEVKEIR 168
+ + R + + P+ +P+ + TL V L + + L++ F G+ + R
Sbjct: 465 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 524
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 525 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 569
Score = 121 (47.7 bits), Expect = 0.00082, P = 0.00082
Identities = 44/177 (24%), Positives = 77/177 (43%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ + +RTL +N+ V EL+ +FE +IR + K +G I+Y + +
Sbjct: 310 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 366
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVN-QG---TLVVFNLDASVSNDDLRQIF 158
A + L+ K +D+ K+ G TLV+ NL S + + L+++F
Sbjct: 367 ADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 426
Query: 159 GAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGA 214
+K + K + + FIEF N+ +I G+ I+LE P G+
Sbjct: 427 EKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 483
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 98 (39.6 bits), Expect = 0.00051, P = 0.00051
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVXXXXXX 190
++G L V L + L Q+F YG++ E+ RET R F+ F ++
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 191 XXXXNRSDINGKRIKLE-PSRP 211
N ++G++I+++ P RP
Sbjct: 64 MMAMNGKSVDGRQIRVDQPLRP 85
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 124 (48.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 38 (18.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 341 SLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGV 378
++ AA + ++ EQ +S P +S S+ NS+ V
Sbjct: 231 AVAAAAAASAYNYAEQTMSHLPQVQSSAVPSHLNSTSV 268
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 124 (48.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 38 (18.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 341 SLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGV 378
++ AA + ++ EQ +S P +S S+ NS+ V
Sbjct: 231 AVAAAAAASAYNYAEQTMSHLPQVQSSAVPSHLNSTSV 268
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 124 (48.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 38 (18.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 341 SLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGV 378
++ AA + ++ EQ +S P +S S+ NS+ V
Sbjct: 231 AVAAAAAASAYNYAEQTMSHLPQVQSSAVPSHLNSTSV 268
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 124 (48.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 38 (18.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 341 SLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGV 378
++ AA + ++ EQ +S P +S S+ NS+ V
Sbjct: 231 AVAAAAAASAYNYAEQTMSHLPQVQSTTVTSHLNSTSV 268
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 90 (36.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHR-----GFVMISYYDIRAARTAM 106
S LFVRN++ ++ EL +F +G I ++ A R GF + Y D AA A
Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353
Query: 107 RALQNKPLRRRKLDI 121
R L K + R L I
Sbjct: 354 RNLDGKIFQGRLLHI 368
Score = 83 (34.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 127 KDNPSEKDVNQGT-LVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK-----RHHKFIE 180
K++ ++K + T +++ NL + D+R +FGAYG+++ +R P K R F +
Sbjct: 685 KEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVR-VPKKFDRSARGFGFAD 743
Query: 181 FYDVXXXXXXXXXXNRSDINGKRIKLE 207
F + + G+R+ LE
Sbjct: 744 FVSAREAENAMDALKNTHLLGRRLVLE 770
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 115 (45.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 39/146 (26%), Positives = 69/146 (47%)
Query: 33 PISNGV-GTVAGEHP-YGEHPSRTLFVRNINSNVEDLELRSLFEQYG---DIRTLYTACK 87
P+S + GT+ +HP + + +FV + + +LR LFEQYG +I L +
Sbjct: 23 PVSKKMNGTL--DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 80
Query: 88 H----RGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPSEKDVNQGTLVV 142
+ +G +++Y +AA A AL N K L I P D+ V L +
Sbjct: 81 NPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK-PADSEKNNAVEDRKLFI 139
Query: 143 FNLDASVSNDDLRQIFGAYGEVKEIR 168
+ + +D+R +F ++G+++E R
Sbjct: 140 GMISKKCTENDIRVMFSSFGQIEECR 165
Score = 52 (23.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 240 SPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNPLHAFSKSTGLATPTP-VN 298
S N+P GT A S + L + SP + S +N P+ + LA T +N
Sbjct: 299 SAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSSSVN--PIASLGALQTLAGATAGLN 356
Query: 299 SNHLPGLASI 308
+ L G+A++
Sbjct: 357 VSSLAGMAAL 366
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 101 (40.6 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 50 HPSRTLFVRNINSNVEDLEL-RSL---FEQYGDIRTLYTACKH--RGFVMISYYDIRAAR 103
+P+ T++V N+N V+ EL RSL F Q+G+I L + K RG I + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 104 TAMRALQNKPLRRRKLDIHFS 124
A+RALQ P + + I ++
Sbjct: 65 NALRALQGFPFYGKPMRIQYA 85
Score = 54 (24.1 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 130 PSEKD---VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEF 181
P E D + L N+ + ++ IF + ++E+R P+ + FIE+
Sbjct: 132 PQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEY 186
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 101 (40.6 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 50 HPSRTLFVRNINSNVEDLEL-RSL---FEQYGDIRTLYTACKH--RGFVMISYYDIRAAR 103
+P+ T++V N+N V+ EL RSL F Q+G+I L + K RG I + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 104 TAMRALQNKPLRRRKLDIHFS 124
A+RALQ P + + I ++
Sbjct: 65 NALRALQGFPFYGKPMRIQYA 85
Score = 54 (24.1 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 130 PSEKD---VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEF 181
P E D + L N+ + ++ IF + ++E+R P+ + FIE+
Sbjct: 132 PQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEY 186
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 124 (48.7 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 46/158 (29%), Positives = 69/158 (43%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114
LF+ N+ + E+RSLFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174
+++ S K S K L V N+ + +N +LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 175 HHKFIEFYDVXXXXXXXXXXNRSDINGKR--IKLEPSR 210
+ F+ + ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
Score = 37 (18.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 341 SLQGAAYQHSQSFPEQKLSASPGPKSPFGESNSNSSGV 378
++ AA + ++ EQ +S P +S S+ NS+ V
Sbjct: 231 AVAAAAAASAYNYAEQTMSHLPQVQSTGVTSHLNSTSV 268
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 120 (47.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 52/170 (30%), Positives = 77/170 (45%)
Query: 14 GVSKLNISDGIAGTGIAHYPISNGVGTVAG-EHPYG-----EHPSRTLFVRNINSNVEDL 67
GV+ G AG A + +N G V G HP G +H + LFV I N+E+
Sbjct: 7 GVAAAEAGAGPAG---AAFSTANS-GRVNGLSHPPGAIAMKDHDAIKLFVGQIPRNLEES 62
Query: 68 ELRSLFEQYGDIRTLYTACK------HRGFVMISYYDIRAARTAMRAL-QNKPLRR---- 116
+L+ LFE++G I L T K H+G ++Y +A A AL + K L
Sbjct: 63 DLKPLFEEFGRIYEL-TVLKDRFTGMHKGCAFLTYCARDSALKAQSALHEQKTLPGVSDG 121
Query: 117 RKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
R+L P + S L V L S DD+R++F +G+++E
Sbjct: 122 RELGRGLGWPPADSSALPPEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEE 171
Score = 45 (20.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 178 FIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARR 216
F+ F + N I KR+K++ RP A R
Sbjct: 436 FVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 474
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 106 (42.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTL------YTACKHRGFVMISYYDIRAARTAMRA 108
LF+ I N+E+ +L+ +FEQ+G I L YT H+G ++Y +A A A
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGM-HKGCAFLTYCARESALKAQNA 67
Query: 109 L-QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE 166
L + K L I P D+ D L V L +S+ D+R++F +G ++E
Sbjct: 68 LHEQKTLPGMNRPIQVK-PADSEGRGDRK---LFVGMLGKQLSDADVRKMFEPFGSIEE 122
Score = 59 (25.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 29/109 (26%), Positives = 48/109 (44%)
Query: 271 LGTLSP--INSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQGR 328
L L+P I + P+ + + S+G +TP + + +P L + + AP G+
Sbjct: 237 LAALNPSSIIATPIASITPSSGTSTPPTIAATPVPALPPPIAVNSYPPVPAAPNGQSASE 296
Query: 329 ANQTN--HMF-SNSASLQGA--AY---QH-SQSFPEQK-LSASPGPKSP 367
A TN H + + S +L AY QH + ++P L P P P
Sbjct: 297 ALYTNGVHPYQAQSPALDPLQQAYTGMQHYTATYPAAYGLVGQPFPHQP 345
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 115 (45.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 39/146 (26%), Positives = 69/146 (47%)
Query: 33 PISNGV-GTVAGEHP-YGEHPSRTLFVRNINSNVEDLELRSLFEQYG---DIRTLYTACK 87
P+S + GT+ +HP + + +FV + + +LR LFEQYG +I L +
Sbjct: 23 PVSKKMNGTL--DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ 80
Query: 88 H----RGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPSEKDVNQGTLVV 142
+ +G +++Y +AA A AL N K L I P D+ V L +
Sbjct: 81 NPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK-PADSEKNNAVEDRKLFI 139
Query: 143 FNLDASVSNDDLRQIFGAYGEVKEIR 168
+ + +D+R +F ++G+++E R
Sbjct: 140 GMISKKCTENDIRVMFSSFGQIEECR 165
Score = 51 (23.0 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 240 SPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINS-NPLHAFSKSTGLATPTP-V 297
S N+P GT A S +PL + S + S NS NP+ + LA T +
Sbjct: 299 SAAQNTPSGTNALTTSS---SPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGL 355
Query: 298 NSNHLPGLASI 308
N L G+A++
Sbjct: 356 NVGSLAGMAAL 366
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 121 (47.7 bits), Expect = 0.00080, P = 0.00080
Identities = 74/354 (20%), Positives = 139/354 (39%)
Query: 3 LEFEPHESLSIGVSKLN---ISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRN 59
+ FE HE+ +S +N ++D G H+ G E + ++V+N
Sbjct: 143 VHFETHEAAQNAISTMNGMLLNDRKVFVG--HFKSRREREVELGARAM-EFTN--IYVKN 197
Query: 60 INSNVEDLELRSLFEQYG---DIRTLYTACKH-RGFVMISYYDIRAARTAMRALQNKPLR 115
++ +V++ L+ LF Q+G ++ + H RGF +++ A+ A+ + + +
Sbjct: 198 LHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVS 257
Query: 116 RRKLDIHFS---IPKDNPSEKDVNQ----------GT-LVVFNLDASVSNDDLRQIFGAY 161
R L + + + + N ++ Q G L V NLD S+ ++ LR+ F Y
Sbjct: 258 GRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPY 317
Query: 162 GEVKEIRETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGGARRXXXXX 221
G + + H K F V +++NG+ + +P A+R
Sbjct: 318 GVITSAKVMTEGGHSKGFGF--VCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Query: 222 XXXXXXXDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPINSNP 281
+ +G P+ S + F V + P A P G+ PI P
Sbjct: 376 AILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQA----PYYGSGPPIQPAP 431
Query: 282 LHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHM 335
+ T A P +S + PG AS++ P + + P+G + + H+
Sbjct: 432 -----RWT--AQPPRPSSAYPPG-ASVVRPAAMSRRPLTPVGSSRQVSTHVPHL 477
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 121 (47.7 bits), Expect = 0.00082, P = 0.00082
Identities = 34/161 (21%), Positives = 73/161 (45%)
Query: 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 111
+F++N++ ++++ L F +G+I + C +H RG+ + + AA A++ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 112 KPLRRRKLDI-HFSIPKDNPSE---KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI 167
L RK+ + HF ++ E K + + + N + + LR+IF A+G +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 168 R----ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRI 204
+ +T R F+ + + N ++NG+ I
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 116 (45.9 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKH-----RGFVMISYYDIRA 101
Y P+ +LFVRNI ++ +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNSSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRD 63
Query: 102 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSEKDVNQGT 139
A A+ L K + R+++I F+ + P + +G+
Sbjct: 64 AEDALHNLDKKWICGRQIEIQFAQGDRKTPHQMKAKEGS 102
Score = 39 (18.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 350 SQSFPEQKLSASPGPKSPFGESNSNSSGVG 379
S+S+ E++ S S + +G SNS G G
Sbjct: 121 SRSY-ERRRSRSRSIEQNYGRSNSPRGGRG 149
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 116 (45.9 bits), Expect = 0.00090, P = 0.00090
Identities = 35/162 (21%), Positives = 68/162 (41%)
Query: 8 HESLSIGVSKLNISDGIAGTGIAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDL 67
H SL G + + G G+ +++G + G S ++++N+ ++++
Sbjct: 70 HNSLGSGHTSTSSHSANVGVGVGGGALASG--STGGSGGNSSPDSGKIYIKNLERSIDNK 127
Query: 68 ELRSLFEQYGDIRTLYTACKH----RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123
+ F +G+I A RG+ + + AAR A+ + +K+ +
Sbjct: 128 AVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVK 187
Query: 124 SIPK-DNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEV 164
IP+ D EK + L V NL + LR++F YG +
Sbjct: 188 FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRI 229
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 121 (47.7 bits), Expect = 0.00097, P = 0.00097
Identities = 32/165 (19%), Positives = 72/165 (43%)
Query: 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 110
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 490 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 549
Query: 111 NKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--R 168
+ + R + + P+ +P+ + TL V L + + L++ F + + R
Sbjct: 550 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 609
Query: 169 ETPHKRHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
ET + F++F +I+G ++ L+ ++P G
Sbjct: 610 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 654
Score = 121 (47.7 bits), Expect = 0.00097, P = 0.00097
Identities = 43/181 (23%), Positives = 77/181 (42%)
Query: 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAA 102
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 388 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 447
Query: 103 RTAMRALQNKPLRRRKLDIHFSIPKDNPSE----KDVN-QG---TLVVFNLDASVSNDDL 154
Q + R + ++++ K + K+ G TLV+ NL S + + L
Sbjct: 448 EKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 507
Query: 155 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVXXXXXXXXXXNRSDINGKRIKLEPSRPGG 213
+++F +K + K + + FIEF N+ +I G+ I+LE P G
Sbjct: 508 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 567
Query: 214 A 214
+
Sbjct: 568 S 568
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 730 693 0.00081 121 3 11 23 0.45 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 119
No. of states in DFA: 616 (65 KB)
Total size of DFA: 351 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.80u 0.09s 66.89t Elapsed: 00:00:03
Total cpu time: 66.82u 0.09s 66.91t Elapsed: 00:00:03
Start: Fri May 10 00:01:10 2013 End: Fri May 10 00:01:13 2013
WARNINGS ISSUED: 1