Query 004788
Match_columns 730
No_of_seqs 649 out of 2761
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 6.3E-75 1.4E-79 633.9 27.4 486 36-708 31-522 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 3.7E-47 8E-52 339.5 11.0 97 570-666 1-97 (97)
3 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-29 3E-34 292.5 26.3 207 54-277 2-227 (562)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-28 4.6E-33 265.7 19.4 159 51-213 2-172 (352)
5 TIGR01659 sex-lethal sex-letha 100.0 5.7E-27 1.2E-31 255.1 21.9 164 47-214 102-277 (346)
6 TIGR01628 PABP-1234 polyadenyl 99.9 3.4E-26 7.3E-31 264.4 19.0 212 51-277 87-334 (562)
7 TIGR01645 half-pint poly-U bin 99.9 9.6E-25 2.1E-29 250.0 19.9 162 51-212 106-284 (612)
8 KOG0148 Apoptosis-promoting RN 99.9 1.4E-24 3E-29 220.7 15.3 164 52-216 62-242 (321)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.4E-24 1.4E-28 230.7 21.4 164 51-214 88-351 (352)
10 KOG0145 RNA-binding protein EL 99.9 2.7E-24 5.9E-29 217.1 15.6 160 50-213 39-210 (360)
11 TIGR01622 SF-CC1 splicing fact 99.9 2E-23 4.4E-28 234.9 19.2 163 48-211 85-265 (457)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.7E-23 5.9E-28 236.2 20.2 164 49-212 272-480 (481)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.5E-23 7.5E-28 235.4 19.5 162 51-213 1-175 (481)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 7.6E-23 1.7E-27 234.1 22.2 161 51-214 57-309 (578)
15 KOG0117 Heterogeneous nuclear 99.9 3.5E-22 7.5E-27 214.6 18.4 164 50-216 81-335 (506)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.8E-22 1E-26 226.6 19.5 163 47-211 170-374 (509)
17 KOG0144 RNA-binding protein CU 99.9 2.6E-22 5.7E-27 214.6 14.2 164 50-216 32-210 (510)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-20 2.5E-25 215.3 19.7 162 50-211 293-501 (509)
19 KOG0131 Splicing factor 3b, su 99.9 3.5E-21 7.6E-26 186.6 12.0 162 51-215 8-180 (203)
20 KOG0123 Polyadenylate-binding 99.8 1.4E-20 3.1E-25 206.4 17.0 196 53-277 2-216 (369)
21 KOG0109 RNA-binding protein LA 99.8 6.1E-21 1.3E-25 195.9 9.7 150 53-214 3-152 (346)
22 KOG0127 Nucleolar protein fibr 99.8 3.8E-20 8.2E-25 202.6 15.7 162 53-214 6-198 (678)
23 TIGR01622 SF-CC1 splicing fact 99.8 1.2E-19 2.6E-24 204.4 19.4 160 52-211 186-447 (457)
24 KOG0123 Polyadenylate-binding 99.8 5.8E-19 1.3E-23 193.8 15.7 224 52-277 76-319 (369)
25 KOG0127 Nucleolar protein fibr 99.8 8.4E-19 1.8E-23 192.1 15.8 168 51-218 116-384 (678)
26 KOG0145 RNA-binding protein EL 99.8 6.1E-18 1.3E-22 171.4 16.0 162 51-212 126-358 (360)
27 KOG0148 Apoptosis-promoting RN 99.8 2.2E-18 4.8E-23 175.7 11.8 189 50-277 4-208 (321)
28 KOG0124 Polypyrimidine tract-b 99.8 1.2E-18 2.5E-23 183.1 9.9 159 52-210 113-288 (544)
29 KOG0110 RNA-binding protein (R 99.8 5.4E-18 1.2E-22 191.2 13.4 162 53-214 516-695 (725)
30 KOG4206 Spliceosomal protein s 99.7 5E-17 1.1E-21 163.2 16.7 163 48-210 5-220 (221)
31 KOG0146 RNA-binding protein ET 99.7 1.7E-16 3.6E-21 161.6 10.3 166 51-216 18-369 (371)
32 TIGR01645 half-pint poly-U bin 99.7 2.9E-15 6.4E-20 172.4 19.6 75 51-125 203-282 (612)
33 KOG0105 Alternative splicing f 99.7 1E-15 2.2E-20 148.9 13.1 149 50-200 4-176 (241)
34 TIGR01648 hnRNP-R-Q heterogene 99.6 7.1E-15 1.5E-19 168.9 20.9 140 98-239 18-163 (578)
35 KOG0147 Transcriptional coacti 99.6 1.8E-16 3.9E-21 175.1 6.2 167 44-211 171-357 (549)
36 KOG4205 RNA-binding protein mu 99.6 9.8E-16 2.1E-20 163.8 9.7 163 51-215 5-179 (311)
37 KOG0144 RNA-binding protein CU 99.6 1E-15 2.3E-20 164.4 9.7 164 51-214 123-506 (510)
38 KOG0110 RNA-binding protein (R 99.6 5.8E-15 1.3E-19 167.0 14.6 215 48-278 381-664 (725)
39 KOG4212 RNA-binding protein hn 99.6 2.6E-12 5.6E-17 138.4 31.7 158 52-209 44-291 (608)
40 TIGR01659 sex-lethal sex-letha 99.6 4.4E-15 9.6E-20 162.2 10.1 128 135-277 105-243 (346)
41 KOG0147 Transcriptional coacti 99.6 1.2E-14 2.6E-19 160.8 11.4 160 51-210 277-526 (549)
42 KOG0106 Alternative splicing f 99.5 2.1E-14 4.6E-19 145.5 6.7 150 53-208 2-167 (216)
43 KOG1190 Polypyrimidine tract-b 99.5 7E-13 1.5E-17 142.1 16.5 161 52-212 297-491 (492)
44 PLN03134 glycine-rich RNA-bind 99.4 5E-13 1.1E-17 129.0 11.6 80 50-129 32-116 (144)
45 KOG1190 Polypyrimidine tract-b 99.4 1.5E-12 3.3E-17 139.5 15.2 167 49-215 147-376 (492)
46 PLN03134 glycine-rich RNA-bind 99.4 5.2E-13 1.1E-17 128.8 10.7 78 136-213 33-115 (144)
47 KOG1548 Transcription elongati 99.4 3.2E-12 6.9E-17 134.9 16.7 164 50-213 132-353 (382)
48 KOG1457 RNA binding protein (c 99.4 3.7E-12 7.9E-17 127.5 13.7 149 51-199 33-273 (284)
49 KOG4211 Splicing factor hnRNP- 99.3 1.9E-11 4.2E-16 134.2 14.0 156 52-210 10-180 (510)
50 PF00076 RRM_1: RNA recognitio 99.3 6E-12 1.3E-16 104.1 7.5 66 140-205 1-70 (70)
51 PF00076 RRM_1: RNA recognitio 99.3 5.8E-12 1.3E-16 104.2 7.3 66 55-120 1-70 (70)
52 KOG0107 Alternative splicing f 99.3 5E-12 1.1E-16 122.7 6.8 77 52-128 10-86 (195)
53 KOG0124 Polypyrimidine tract-b 99.3 4.6E-11 1E-15 126.4 13.6 159 51-209 209-532 (544)
54 KOG0107 Alternative splicing f 99.3 9.4E-12 2E-16 120.8 7.1 76 137-212 10-85 (195)
55 COG0724 RNA-binding proteins ( 99.2 5.1E-11 1.1E-15 120.8 12.4 118 52-169 115-257 (306)
56 KOG0120 Splicing factor U2AF, 99.2 7.7E-11 1.7E-15 132.3 12.3 162 50-211 287-491 (500)
57 KOG0122 Translation initiation 99.2 9.5E-11 2.1E-15 119.1 10.8 80 48-127 185-269 (270)
58 KOG0121 Nuclear cap-binding pr 99.2 3.9E-11 8.5E-16 111.1 6.3 76 49-124 33-113 (153)
59 KOG0114 Predicted RNA-binding 99.2 1.7E-10 3.6E-15 103.4 9.9 82 136-217 17-100 (124)
60 KOG0114 Predicted RNA-binding 99.2 1.4E-10 2.9E-15 104.0 9.0 80 49-128 15-96 (124)
61 KOG0131 Splicing factor 3b, su 99.2 1.2E-10 2.6E-15 113.9 9.2 128 136-277 8-147 (203)
62 KOG4660 Protein Mei2, essentia 99.1 4.4E-11 9.5E-16 133.2 6.9 162 49-213 72-251 (549)
63 KOG0125 Ataxin 2-binding prote 99.1 1E-10 2.2E-15 123.0 8.7 100 110-213 73-175 (376)
64 KOG1456 Heterogeneous nuclear 99.1 9E-10 1.9E-14 117.3 15.8 172 42-214 21-201 (494)
65 KOG0122 Translation initiation 99.1 1.1E-10 2.3E-15 118.7 8.2 77 136-212 188-269 (270)
66 PLN03120 nucleic acid binding 99.1 2E-10 4.4E-15 119.6 10.2 75 52-127 4-80 (260)
67 PLN03120 nucleic acid binding 99.1 2E-10 4.4E-15 119.5 10.0 74 137-211 4-79 (260)
68 PF14259 RRM_6: RNA recognitio 99.1 1.4E-10 3E-15 97.0 7.2 66 55-120 1-70 (70)
69 PF14259 RRM_6: RNA recognitio 99.1 2.3E-10 5.1E-15 95.7 8.2 66 140-205 1-70 (70)
70 smart00362 RRM_2 RNA recogniti 99.1 4.3E-10 9.3E-15 91.6 8.8 69 139-207 1-72 (72)
71 KOG0125 Ataxin 2-binding prote 99.1 2.3E-10 4.9E-15 120.4 8.2 77 51-127 95-174 (376)
72 KOG0117 Heterogeneous nuclear 99.1 7.7E-10 1.7E-14 120.3 12.4 128 136-276 82-215 (506)
73 PF13893 RRM_5: RNA recognitio 99.1 6.7E-10 1.4E-14 89.5 8.5 56 154-209 1-56 (56)
74 KOG4212 RNA-binding protein hn 99.1 3E-09 6.4E-14 115.2 15.6 70 138-209 537-608 (608)
75 KOG0121 Nuclear cap-binding pr 99.0 3E-10 6.6E-15 105.3 6.5 76 136-211 35-115 (153)
76 PLN03213 repressor of silencin 99.0 5.5E-10 1.2E-14 122.1 9.5 77 136-212 9-88 (759)
77 smart00362 RRM_2 RNA recogniti 99.0 7.4E-10 1.6E-14 90.2 8.0 69 54-122 1-72 (72)
78 KOG4207 Predicted splicing fac 99.0 3.3E-10 7.1E-15 112.6 5.5 76 137-212 13-93 (256)
79 KOG0109 RNA-binding protein LA 99.0 3.3E-10 7.2E-15 117.5 5.8 98 139-239 4-103 (346)
80 KOG4207 Predicted splicing fac 99.0 4.9E-10 1.1E-14 111.4 6.6 80 46-125 7-91 (256)
81 KOG0105 Alternative splicing f 99.0 5.2E-10 1.1E-14 109.5 6.2 78 136-213 5-84 (241)
82 KOG0113 U1 small nuclear ribon 99.0 1.7E-09 3.7E-14 112.7 9.9 90 125-214 89-183 (335)
83 KOG0113 U1 small nuclear ribon 99.0 1.5E-09 3.3E-14 113.0 8.9 78 48-125 97-179 (335)
84 cd00590 RRM RRM (RNA recogniti 99.0 3.4E-09 7.3E-14 86.8 9.3 70 139-208 1-74 (74)
85 KOG1365 RNA-binding protein Fu 98.9 3.2E-09 6.8E-14 113.5 10.5 162 50-212 159-362 (508)
86 PLN03213 repressor of silencin 98.9 2.3E-09 4.9E-14 117.4 9.0 117 50-169 8-135 (759)
87 smart00360 RRM RNA recognition 98.9 2.9E-09 6.3E-14 86.2 7.5 66 142-207 1-71 (71)
88 PLN03121 nucleic acid binding 98.9 2.9E-09 6.3E-14 109.5 9.2 74 51-125 4-79 (243)
89 cd00590 RRM RRM (RNA recogniti 98.9 4.1E-09 8.9E-14 86.2 8.3 70 54-123 1-74 (74)
90 smart00360 RRM RNA recognition 98.9 3.4E-09 7.3E-14 85.9 7.4 66 57-122 1-71 (71)
91 PLN03121 nucleic acid binding 98.9 4.3E-09 9.4E-14 108.3 9.6 74 137-211 5-80 (243)
92 KOG0111 Cyclophilin-type pepti 98.9 9.1E-10 2E-14 110.2 4.5 79 51-129 9-92 (298)
93 KOG0149 Predicted RNA-binding 98.9 1.5E-09 3.3E-14 110.1 6.2 78 135-213 10-92 (247)
94 KOG0149 Predicted RNA-binding 98.9 2.9E-09 6.4E-14 108.0 7.7 77 48-125 8-89 (247)
95 KOG0129 Predicted RNA-binding 98.9 2.9E-08 6.2E-13 110.3 15.6 142 49-193 256-432 (520)
96 PF13893 RRM_5: RNA recognitio 98.9 4.2E-09 9E-14 84.8 6.6 56 69-124 1-56 (56)
97 KOG1456 Heterogeneous nuclear 98.9 5.1E-08 1.1E-12 104.2 16.4 166 47-212 282-491 (494)
98 KOG0111 Cyclophilin-type pepti 98.9 1.7E-09 3.6E-14 108.4 4.6 81 136-216 9-94 (298)
99 COG0724 RNA-binding proteins ( 98.9 8.4E-09 1.8E-13 104.6 9.6 75 137-211 115-194 (306)
100 KOG0130 RNA-binding protein RB 98.8 9E-09 2E-13 96.4 6.3 79 135-213 70-153 (170)
101 KOG0126 Predicted RNA-binding 98.8 8.3E-10 1.8E-14 107.9 -0.7 77 50-126 33-114 (219)
102 KOG0108 mRNA cleavage and poly 98.8 1.5E-08 3.2E-13 113.4 8.4 80 138-217 19-103 (435)
103 KOG0108 mRNA cleavage and poly 98.8 1.1E-08 2.4E-13 114.4 7.1 76 53-128 19-99 (435)
104 KOG0112 Large RNA-binding prot 98.8 5.2E-09 1.1E-13 121.7 4.4 161 48-215 368-534 (975)
105 KOG0130 RNA-binding protein RB 98.7 1.5E-08 3.2E-13 94.9 6.6 78 51-128 71-153 (170)
106 KOG0126 Predicted RNA-binding 98.7 2.2E-09 4.7E-14 105.1 -0.1 75 136-210 34-113 (219)
107 KOG4205 RNA-binding protein mu 98.7 9.8E-09 2.1E-13 110.4 4.4 126 136-277 5-147 (311)
108 KOG0132 RNA polymerase II C-te 98.7 2.8E-08 6.2E-13 114.1 8.1 76 52-128 421-496 (894)
109 KOG4206 Spliceosomal protein s 98.7 3.6E-08 7.9E-13 99.9 7.9 77 137-213 9-91 (221)
110 smart00361 RRM_1 RNA recogniti 98.7 6.1E-08 1.3E-12 82.0 7.3 57 151-207 2-70 (70)
111 KOG0120 Splicing factor U2AF, 98.6 5.2E-08 1.1E-12 109.8 7.7 166 49-216 172-373 (500)
112 KOG0153 Predicted RNA-binding 98.6 1.1E-07 2.3E-12 101.3 8.6 86 41-127 217-303 (377)
113 KOG0132 RNA polymerase II C-te 98.5 1.5E-07 3.2E-12 108.4 8.4 79 137-216 421-499 (894)
114 smart00361 RRM_1 RNA recogniti 98.5 1.8E-07 3.9E-12 79.1 6.2 56 66-121 2-69 (70)
115 KOG4454 RNA binding protein (R 98.5 3.3E-08 7.2E-13 99.3 1.6 135 51-199 8-150 (267)
116 KOG0153 Predicted RNA-binding 98.5 2.7E-07 5.9E-12 98.3 8.2 79 132-211 223-302 (377)
117 KOG0146 RNA-binding protein ET 98.4 3.1E-07 6.8E-12 94.6 6.2 81 49-129 282-367 (371)
118 KOG0415 Predicted peptidyl pro 98.4 2E-07 4.3E-12 99.2 4.0 78 49-126 236-318 (479)
119 KOG0128 RNA-binding protein SA 98.4 8.2E-08 1.8E-12 111.7 0.8 140 52-212 667-815 (881)
120 KOG4210 Nuclear localization s 98.3 8.8E-07 1.9E-11 94.8 6.6 163 51-214 87-266 (285)
121 KOG4208 Nucleolar RNA-binding 98.3 2.6E-06 5.6E-11 85.5 8.1 84 44-127 41-130 (214)
122 KOG0226 RNA-binding proteins [ 98.2 1.2E-06 2.5E-11 90.2 4.4 160 54-213 98-271 (290)
123 KOG0415 Predicted peptidyl pro 98.2 2E-06 4.4E-11 91.7 6.3 77 135-211 237-318 (479)
124 KOG4208 Nucleolar RNA-binding 98.2 4E-06 8.6E-11 84.1 8.0 79 134-212 46-130 (214)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 98.2 1.2E-06 2.5E-11 87.7 4.0 92 567-658 4-100 (176)
126 KOG4211 Splicing factor hnRNP- 98.1 8.9E-06 1.9E-10 90.4 8.6 154 50-205 101-351 (510)
127 KOG2193 IGF-II mRNA-binding pr 98.0 5.3E-07 1.1E-11 97.8 -2.6 152 53-211 2-156 (584)
128 KOG0533 RRM motif-containing p 98.0 1.5E-05 3.4E-10 83.0 7.9 78 49-126 80-161 (243)
129 KOG0151 Predicted splicing reg 98.0 1.4E-05 3E-10 91.7 7.8 83 44-126 166-256 (877)
130 KOG4661 Hsp27-ERE-TATA-binding 98.0 2.1E-05 4.5E-10 88.1 8.5 75 51-125 404-483 (940)
131 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.3E-05 2.7E-10 89.8 6.7 74 138-211 406-484 (940)
132 KOG0106 Alternative splicing f 97.9 7.1E-06 1.5E-10 83.9 3.7 71 139-212 3-73 (216)
133 KOG1457 RNA binding protein (c 97.9 3.4E-05 7.4E-10 78.2 8.3 80 137-216 34-122 (284)
134 KOG1365 RNA-binding protein Fu 97.9 0.00012 2.5E-09 79.3 12.7 153 50-204 58-235 (508)
135 KOG0116 RasGAP SH3 binding pro 97.8 2.4E-05 5.3E-10 87.5 6.4 77 138-215 289-370 (419)
136 KOG0533 RRM motif-containing p 97.8 4.2E-05 9.2E-10 79.8 7.7 78 136-213 82-163 (243)
137 KOG0116 RasGAP SH3 binding pro 97.8 2.6E-05 5.7E-10 87.2 6.4 75 50-125 286-365 (419)
138 KOG4676 Splicing factor, argin 97.8 7.7E-06 1.7E-10 88.4 1.6 157 53-211 8-225 (479)
139 PF04059 RRM_2: RNA recognitio 97.8 0.0001 2.2E-09 66.7 8.2 73 53-125 2-85 (97)
140 KOG4307 RNA binding protein RB 97.7 6.4E-05 1.4E-09 86.2 7.7 165 48-213 307-515 (944)
141 KOG0151 Predicted splicing reg 97.7 6.7E-05 1.5E-09 86.3 6.8 78 134-211 171-256 (877)
142 KOG4209 Splicing factor RNPS1, 97.6 6.7E-05 1.4E-09 78.2 5.2 79 133-212 97-180 (231)
143 KOG1548 Transcription elongati 97.5 0.00014 2.9E-09 78.1 6.5 74 137-210 134-219 (382)
144 PF11608 Limkain-b1: Limkain b 97.5 0.00031 6.8E-09 61.5 7.1 69 138-211 3-76 (90)
145 PF11608 Limkain-b1: Limkain b 97.5 0.00044 9.5E-09 60.6 7.5 69 53-126 3-76 (90)
146 KOG4209 Splicing factor RNPS1, 97.4 0.00016 3.4E-09 75.4 5.2 78 47-125 96-178 (231)
147 KOG4454 RNA binding protein (R 97.4 8.2E-05 1.8E-09 75.4 2.7 74 136-210 8-85 (267)
148 PF08777 RRM_3: RNA binding mo 97.3 0.00049 1.1E-08 63.3 6.2 84 139-224 3-91 (105)
149 KOG0226 RNA-binding proteins [ 97.3 0.0003 6.6E-09 72.8 5.1 75 50-124 188-267 (290)
150 PF08777 RRM_3: RNA binding mo 96.8 0.0032 7E-08 57.9 7.0 59 53-112 2-60 (105)
151 KOG0128 RNA-binding protein SA 96.8 0.00027 5.9E-09 83.1 -0.4 148 52-200 571-735 (881)
152 COG5175 MOT2 Transcriptional r 96.8 0.0041 8.8E-08 66.7 8.1 76 137-212 114-203 (480)
153 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.004 8.6E-08 50.2 5.8 52 138-191 2-53 (53)
154 COG5175 MOT2 Transcriptional r 96.7 0.0024 5.2E-08 68.4 5.6 76 51-126 113-202 (480)
155 KOG1295 Nonsense-mediated deca 96.6 0.0011 2.4E-08 72.4 2.9 73 568-641 5-79 (376)
156 KOG1855 Predicted RNA-binding 96.6 0.0031 6.6E-08 69.6 6.1 68 131-198 225-310 (484)
157 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0049 1.1E-07 49.7 5.6 53 52-106 1-53 (53)
158 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.01 2.2E-07 54.1 8.0 72 137-210 6-90 (100)
159 KOG2193 IGF-II mRNA-binding pr 96.5 0.0026 5.6E-08 69.9 4.6 101 138-241 2-107 (584)
160 KOG1995 Conserved Zn-finger pr 96.3 0.0035 7.6E-08 68.0 4.1 79 136-214 65-156 (351)
161 KOG0115 RNA-binding protein p5 96.2 0.0094 2E-07 62.1 6.4 86 101-197 6-95 (275)
162 KOG1995 Conserved Zn-finger pr 96.1 0.0075 1.6E-07 65.5 5.5 78 49-126 63-153 (351)
163 KOG3152 TBP-binding protein, a 96.0 0.0032 7E-08 65.5 2.1 68 136-203 73-157 (278)
164 KOG4307 RNA binding protein RB 96.0 0.017 3.6E-07 67.1 7.8 71 138-208 868-943 (944)
165 KOG1855 Predicted RNA-binding 95.9 0.0089 1.9E-07 66.1 4.9 67 47-113 226-310 (484)
166 PF07576 BRAP2: BRCA1-associat 95.7 0.085 1.8E-06 49.0 9.6 85 569-656 11-96 (110)
167 KOG2202 U2 snRNP splicing fact 95.6 0.0051 1.1E-07 64.1 1.7 62 152-213 83-149 (260)
168 PF05172 Nup35_RRM: Nup53/35/4 95.5 0.025 5.4E-07 51.7 5.5 72 51-124 5-89 (100)
169 KOG3152 TBP-binding protein, a 95.5 0.0094 2E-07 62.1 3.0 68 51-118 73-157 (278)
170 KOG1996 mRNA splicing factor [ 95.5 0.028 6E-07 59.6 6.2 61 151-211 300-366 (378)
171 PF08952 DUF1866: Domain of un 95.4 0.061 1.3E-06 52.2 8.0 75 135-213 25-108 (146)
172 KOG2314 Translation initiation 95.4 0.036 7.9E-07 63.2 7.3 72 136-207 57-139 (698)
173 KOG4210 Nuclear localization s 95.3 0.015 3.2E-07 62.6 3.8 77 51-128 183-265 (285)
174 KOG0804 Cytoplasmic Zn-finger 94.9 0.08 1.7E-06 59.2 8.2 81 570-654 74-154 (493)
175 KOG2314 Translation initiation 94.9 0.038 8.2E-07 63.1 5.7 73 50-122 56-139 (698)
176 KOG2202 U2 snRNP splicing fact 94.4 0.021 4.6E-07 59.6 2.0 58 67-124 83-145 (260)
177 KOG2416 Acinus (induces apopto 93.8 0.046 1E-06 62.7 3.3 76 136-212 443-522 (718)
178 KOG0129 Predicted RNA-binding 93.3 0.18 3.8E-06 57.4 6.8 64 45-108 363-432 (520)
179 KOG0112 Large RNA-binding prot 93.3 0.028 6E-07 67.2 0.4 103 137-239 372-480 (975)
180 PF15023 DUF4523: Protein of u 93.2 0.34 7.3E-06 46.9 7.4 75 47-124 81-159 (166)
181 KOG2416 Acinus (induces apopto 93.0 0.075 1.6E-06 61.1 3.3 76 48-124 440-519 (718)
182 PF08952 DUF1866: Domain of un 92.2 0.26 5.5E-06 48.0 5.4 73 50-126 25-106 (146)
183 KOG4676 Splicing factor, argin 92.0 0.39 8.5E-06 53.0 7.1 72 138-210 8-87 (479)
184 PF08675 RNA_bind: RNA binding 91.8 0.56 1.2E-05 41.5 6.5 55 52-110 9-63 (87)
185 KOG4849 mRNA cleavage factor I 91.7 0.17 3.6E-06 54.9 3.9 71 52-122 80-157 (498)
186 PF08675 RNA_bind: RNA binding 91.3 0.8 1.7E-05 40.5 6.9 56 137-196 9-64 (87)
187 PF15023 DUF4523: Protein of u 91.2 0.94 2E-05 43.9 7.9 74 134-210 83-160 (166)
188 KOG4849 mRNA cleavage factor I 91.1 0.23 5.1E-06 53.8 4.2 72 138-209 81-159 (498)
189 KOG2135 Proteins containing th 91.0 0.24 5.3E-06 55.7 4.4 62 150-213 386-447 (526)
190 KOG1996 mRNA splicing factor [ 90.9 0.39 8.4E-06 51.2 5.5 75 51-125 280-365 (378)
191 PF10309 DUF2414: Protein of u 90.9 0.85 1.9E-05 38.1 6.4 52 138-194 6-62 (62)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 90.0 0.26 5.6E-06 49.5 3.3 68 50-117 5-83 (176)
193 KOG2591 c-Mpl binding protein, 89.3 0.95 2.1E-05 52.1 7.2 96 99-206 147-246 (684)
194 PF10309 DUF2414: Protein of u 89.0 1.5 3.2E-05 36.8 6.4 54 52-109 5-62 (62)
195 KOG2591 c-Mpl binding protein, 88.4 0.87 1.9E-05 52.4 6.2 78 43-122 166-247 (684)
196 PF04847 Calcipressin: Calcipr 86.3 1.4 3.1E-05 44.6 5.9 63 150-213 8-72 (184)
197 KOG2068 MOT2 transcription fac 84.9 0.5 1.1E-05 51.4 1.9 76 52-127 77-163 (327)
198 KOG2068 MOT2 transcription fac 84.2 0.46 1E-05 51.7 1.3 76 138-213 78-164 (327)
199 KOG4285 Mitotic phosphoprotein 83.9 4.5 9.7E-05 43.7 8.3 70 138-210 198-268 (350)
200 PF14111 DUF4283: Domain of un 82.1 2 4.3E-05 41.2 4.6 105 63-171 28-139 (153)
201 PF04847 Calcipressin: Calcipr 81.6 2 4.3E-05 43.6 4.5 63 64-127 7-71 (184)
202 KOG4574 RNA-binding protein (c 79.9 1.1 2.5E-05 53.7 2.5 72 140-212 301-374 (1007)
203 KOG0115 RNA-binding protein p5 79.4 1.9 4.1E-05 45.5 3.6 59 53-111 32-94 (275)
204 KOG4285 Mitotic phosphoprotein 78.5 3 6.4E-05 45.0 4.8 62 53-117 198-259 (350)
205 PF03880 DbpA: DbpA RNA bindin 76.8 8.2 0.00018 33.0 6.3 59 147-209 11-74 (74)
206 PF07292 NID: Nmi/IFP 35 domai 76.5 2.7 5.9E-05 37.6 3.3 68 92-159 1-74 (88)
207 PF10567 Nab6_mRNP_bdg: RNA-re 75.9 46 0.00099 36.2 12.7 144 51-195 14-212 (309)
208 PF07576 BRAP2: BRCA1-associat 74.6 20 0.00043 33.4 8.6 65 51-115 12-80 (110)
209 KOG2135 Proteins containing th 74.2 2.2 4.9E-05 48.3 2.6 77 49-127 369-446 (526)
210 PF11767 SET_assoc: Histone ly 69.9 17 0.00036 30.9 6.3 55 148-206 11-65 (66)
211 KOG2253 U1 snRNP complex, subu 68.2 5 0.00011 47.4 3.8 69 136-208 39-107 (668)
212 KOG2253 U1 snRNP complex, subu 65.9 4.4 9.4E-05 47.8 2.7 70 50-123 38-107 (668)
213 KOG4574 RNA-binding protein (c 63.7 4.5 9.7E-05 48.9 2.3 73 54-127 300-374 (1007)
214 PF11767 SET_assoc: Histone ly 62.7 22 0.00048 30.2 5.7 55 63-121 11-65 (66)
215 KOG2318 Uncharacterized conser 56.3 59 0.0013 38.3 9.4 130 47-209 169-305 (650)
216 KOG2891 Surface glycoprotein [ 50.1 8.2 0.00018 41.1 1.4 86 137-222 149-278 (445)
217 PF03880 DbpA: DbpA RNA bindin 49.7 48 0.001 28.3 5.8 58 62-123 11-73 (74)
218 KOG4019 Calcineurin-mediated s 49.6 14 0.00031 37.2 2.9 74 139-213 12-91 (193)
219 KOG0804 Cytoplasmic Zn-finger 46.1 65 0.0014 36.9 7.5 65 137-201 74-142 (493)
220 KOG2891 Surface glycoprotein [ 43.6 13 0.00028 39.8 1.6 62 53-114 150-247 (445)
221 KOG4410 5-formyltetrahydrofola 37.0 52 0.0011 35.5 4.8 49 52-100 330-378 (396)
222 PRK14548 50S ribosomal protein 34.5 74 0.0016 28.3 4.7 55 139-193 22-80 (84)
223 PRK14548 50S ribosomal protein 31.5 86 0.0019 27.9 4.6 54 55-108 23-80 (84)
224 TIGR03636 L23_arch archaeal ri 31.4 94 0.002 27.2 4.8 55 139-193 15-73 (77)
225 KOG4019 Calcineurin-mediated s 29.4 36 0.00078 34.5 2.1 75 52-127 10-90 (193)
226 COG5105 MIH1 Mitotic inducer, 28.6 1.4E+02 0.003 33.1 6.4 97 581-685 243-344 (427)
227 KOG4483 Uncharacterized conser 26.8 1.5E+02 0.0031 33.7 6.3 51 137-192 391-445 (528)
228 KOG4483 Uncharacterized conser 23.9 1.1E+02 0.0024 34.5 4.8 53 50-107 389-445 (528)
229 COG5594 Uncharacterized integr 23.0 53 0.0012 40.2 2.3 30 50-79 206-236 (827)
230 PF03439 Spt5-NGN: Early trans 21.4 1.4E+02 0.0029 26.3 4.0 35 78-112 33-67 (84)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.3e-75 Score=633.93 Aligned_cols=486 Identities=53% Similarity=0.778 Sum_probs=360.8
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccC
Q 004788 36 NGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 115 (730)
Q Consensus 36 ng~~~~~ge~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~ 115 (730)
++.+...+++|.++ +|+ || -+|-.+|+.| ++.+
T Consensus 31 n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~----------------------------------~~p~- 63 (549)
T KOG4660|consen 31 NSAGFVFPEHPPGE--SRT-FV---------SELSALFEPF----------------------------------NKPL- 63 (549)
T ss_pred CCCccccCCCCCCC--CCC-Ch---------hhHHhhhhcc----------------------------------CCCC-
Confidence 66678888999888 677 88 7888999988 1111
Q ss_pred CCcceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhC
Q 004788 116 RRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 195 (730)
Q Consensus 116 Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~Ln 195 (730)
+.+.+.+++.++++|+|.|||.++++++|+.+|+.||+|++|+.+...++.+||+|+|+++|++|+++|+
T Consensus 64 ----------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~ 133 (549)
T KOG4660|consen 64 ----------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALN 133 (549)
T ss_pred ----------CcCCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHH
Confidence 1156667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCCceEEEEecCCCchhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCcccccccccCCCCCCccccC
Q 004788 196 RSDINGKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLS 275 (730)
Q Consensus 196 G~~I~Gr~IkV~~A~pk~~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~~g~S~gfGfvs 275 (730)
+.+|.|++|+ ++++.++..+-+.. ..+..++++++++++|+.|. ++..||++.
T Consensus 134 ~~~~~~~~~k----~~~~~~~~~~~~~~--------~~~~~~~~~p~a~s~pgg~~---------------~~~~~g~l~ 186 (549)
T KOG4660|consen 134 RREIAGKRIK----RPGGARRAMGLQSG--------TSFLNHFGSPLANSPPGGWP---------------RGQLFGMLS 186 (549)
T ss_pred HHHhhhhhhc----CCCcccccchhccc--------chhhhhccchhhcCCCCCCc---------------CCcceeeec
Confidence 9999999999 77777776555543 56778899999999999987 466788888
Q ss_pred CCCCCCccccccccCCCCCCCCcCCCCCCCcccCCCCCCCCCccccCCccccccccccccccccccccccccccCCCccc
Q 004788 276 PINSNPLHAFSKSTGLATPTPVNSNHLPGLASILPPHLSNTGKIAPIGKDQGRANQTNHMFSNSASLQGAAYQHSQSFPE 355 (730)
Q Consensus 276 p~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 355 (730)
|+...-+..+ +++-..-.+ +...+...| |.+.+ +.+. -++.++|
T Consensus 187 P~~s~~~~~~---------------------------~~~~~~~~~-~~~~~~~~h--q~~~~--~~~~----~s~a~~~ 230 (549)
T KOG4660|consen 187 PTRSSILLEH---------------------------ISSVDGSSP-GRETPLLNH--QRFVE--FADN----RSYAFSE 230 (549)
T ss_pred cchhhhhhhc---------------------------chhccCccc-cccccchhh--hhhhh--hccc----cchhhcc
Confidence 8732222222 111000000 112222222 22221 1111 2335565
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 004788 356 QKLSASPGPKSPFGESNSNSSGVGTLSGPQFLWGSPPPYSERSSSSAWPTSSVGHPFSSSGQGQGFPYGSRHGSFIGSHH 435 (730)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (730)
+.. |...++..++.+++++--+|+ ++.+.. ........++
T Consensus 231 ~~~----------G~~~s~~~~v~t~S~~~g~~n---------------------~~~~~r---------~~~~~~~~~~ 270 (549)
T KOG4660|consen 231 PRG----------GFLISNSSGVITFSGPGGVWN---------------------PFPSRR---------QRQNSSSSHY 270 (549)
T ss_pred cCC----------ceecCCCCceEEecCCCcccC---------------------Cccccc---------cccccCcccc
Confidence 521 666677778888888744441 111111 1111223467
Q ss_pred cccccCCCCCCcccCcCCCCCCCCCCcCCCCcCCCCCCCCCCCCCcccccC--ccccc-CCCCCcCCCCCCCccccCCCC
Q 004788 436 QHHVGSAPSGVSLDRNFGFFPESPETSFTNPVPLGGMGLSRNNAGYMMNVG--GRVGV-GLPLNVTDNGSPSLRMMSFPR 512 (730)
Q Consensus 436 ~~~~gsap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 512 (730)
+||||+||+..+. .....+++....+++.++.. +.+|. ..+++..+..++++++.+.++
T Consensus 271 ~~hi~~~Ps~~~l------------------~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~r 332 (549)
T KOG4660|consen 271 EHHIGSAPSMHHL------------------LSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPR 332 (549)
T ss_pred cCccCCCcccccc------------------cccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCC
Confidence 9999999983221 11122233333333222211 22443 355677778888999999998
Q ss_pred CCCcccCCCCCCCCCCCCccc---cccccccccccCCCCccccccccccChhhhhcCCCcceeEEeecCCCCCCHHHHHH
Q 004788 513 HGPLFFGNGSYSGLGTTSNEA---FTERGRTRRVENCGSQVDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLA 589 (730)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~r~~~~~~~~~~~~~~~~~~~~i~~g~d~rTTvMirNIPnk~~~~~l~~ 589 (730)
... .|. ++. ......+. ..+..+.||.+....+.+ ++++.+|+.+|.+|+|.|||+||||||||||++||++
T Consensus 333 v~~-~f~-~~~--~~~~~~~~~~~~~~~~~~~Rtt~~i~ni~-n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~ 407 (549)
T KOG4660|consen 333 VPK-NFE-GRR--SYTSQNDYPVELILNYRDRRTTVMIKNIP-NKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLA 407 (549)
T ss_pred CCc-ccc-ccc--ccccccccccccccccccchhhhhhhccc-cchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhh
Confidence 887 663 221 11122222 234666677766554444 8999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecccccccceeEEEEEeccChHHHHHHHHHHcCCcccCCCCccEEEEEeeeccchHHHHHHhccCc
Q 004788 590 AIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGQAALVTHFQNSS 669 (730)
Q Consensus 590 ~id~~~~g~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~K~~~v~yA~iQG~~~l~~~f~~s~ 669 (730)
. ||.++|+|||+||||||+|+||||||||||++|++|++||++|||++|++|+|+|||+|+|||||||++|++|||||+
T Consensus 408 ~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~ 486 (549)
T KOG4660|consen 408 A-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSS 486 (549)
T ss_pred h-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhccc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeeeeEEecCCCCCCcccccCCCCccccccCCC
Q 004788 670 LMNEDKRCRPIVFHSEGQETSDQEALLSSNLNIFIRQPD 708 (730)
Q Consensus 670 ~~~~~~~~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (730)
+|||++.|+|++|++ ++.|.+|++|... +++.+...
T Consensus 487 lm~E~e~y~Pvvf~p--p~dg~~~~~p~~~-~~~a~~~~ 522 (549)
T KOG4660|consen 487 LMCEDEAYRPVVFSP--PEDGREEPEPVKL-NQDAGAGH 522 (549)
T ss_pred ccccchhcCceEecC--cccccccCccccc-cccCCCCc
Confidence 999999999999998 8899999999998 87755443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=3.7e-47 Score=339.54 Aligned_cols=97 Identities=66% Similarity=1.209 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhcCCCceeEEEecccccccceeEEEEEeccChHHHHHHHHHHcCCcccCCCCccEEE
Q 004788 570 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 649 (730)
Q Consensus 570 rTTvMirNIPnk~~~~~l~~~id~~~~g~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 649 (730)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||++++++.+|+++|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccchHHHHHHhc
Q 004788 650 LAYARIQGQAALVTHFQ 666 (730)
Q Consensus 650 v~yA~iQG~~~l~~~f~ 666 (730)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.4e-29 Score=292.53 Aligned_cols=207 Identities=20% Similarity=0.349 Sum_probs=176.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 54 tLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
+|||+|||+++||++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.+++..+.|++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999873 46789999999999999999999999999999999999975432
Q ss_pred CCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 129 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 129 ~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
. ......++|||+||+.++++++|+++|++||.|.+|++ .++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 82 ~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 S--LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred c--ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 2 22234568999999999999999999999999999865 34678999999999999999999999999999999
Q ss_pred EEEecCCCchhh---------hhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc-CCCCCCcccc
Q 004788 205 KLEPSRPGGARR---------NLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTL 274 (730)
Q Consensus 205 kV~~A~pk~~r~---------~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~-~g~S~gfGfv 274 (730)
.|....++..+. .++.++...++++++..++. .||.+....++.+ .++++|||||
T Consensus 160 ~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~---------------~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 160 YVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA---------------KFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred EEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH---------------hcCCEEEEEEEECCCCCcccEEEE
Confidence 998876655442 46677888888888887754 4555666666655 6789999998
Q ss_pred CCC
Q 004788 275 SPI 277 (730)
Q Consensus 275 sp~ 277 (730)
.+.
T Consensus 225 ~F~ 227 (562)
T TIGR01628 225 NFE 227 (562)
T ss_pred EEC
Confidence 664
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.1e-28 Score=265.71 Aligned_cols=159 Identities=21% Similarity=0.399 Sum_probs=142.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
+..+|||+|||.+++|++|+++|++||+|.+|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4789999999999999999999999999999873 56789999999999999999999999999999999999987
Q ss_pred CCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
++... ....+|||+|||.++++++|+++|++||.|..+++ ++..+|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 65432 33568999999999999999999999999988865 3456899999999999999999999999998
Q ss_pred C--ceEEEEecCCCc
Q 004788 201 G--KRIKLEPSRPGG 213 (730)
Q Consensus 201 G--r~IkV~~A~pk~ 213 (730)
| .+|+|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678888886543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=5.7e-27 Score=255.10 Aligned_cols=164 Identities=23% Similarity=0.413 Sum_probs=145.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
......++|||+|||.++||++|+++|+.||+|++|++ +++++|||||+|.+.++|++|++.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556899999999999999999999999999998873 5678999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCC
Q 004788 122 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNR 196 (730)
Q Consensus 122 ~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG 196 (730)
.++.+... .....+|||.|||.++++++|+++|++||+|+.|++ +++++++|||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 234568999999999999999999999999998865 456689999999999999999999999
Q ss_pred ceeCC--ceEEEEecCCCch
Q 004788 197 SDING--KRIKLEPSRPGGA 214 (730)
Q Consensus 197 ~~I~G--r~IkV~~A~pk~~ 214 (730)
..+.+ +.|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 98866 7899999986543
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=3.4e-26 Score=264.37 Aligned_cols=212 Identities=21% Similarity=0.370 Sum_probs=176.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
...+|||+|||.++++++|+++|+.||.|.+|+. .++++|||||+|.+.++|++|++.++|..+.++.|.|....+
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 3578999999999999999999999999998873 457899999999999999999999999999999999987665
Q ss_pred CCCC-CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC-
Q 004788 127 KDNP-SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN- 200 (730)
Q Consensus 127 k~~~-~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~- 200 (730)
+... .......++|||+||+.++|+++|+++|+.||+|.++++ .++.+|||||+|.+.++|.+|++.|+|..|.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 5433 223344568999999999999999999999999999865 3456889999999999999999999999999
Q ss_pred ---CceEEEEecCCCchhhhhh----------------------hhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCC
Q 004788 201 ---GKRIKLEPSRPGGARRNLM----------------------QQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGS 255 (730)
Q Consensus 201 ---Gr~IkV~~A~pk~~r~~~~----------------------~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gs 255 (730)
|+.|.|.+++++..+...+ .++...+++++++. .|..||.
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~---------------~F~~~G~ 311 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRE---------------LFSECGE 311 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHH---------------HHHhcCC
Confidence 9999999998877653322 22223333333333 4777888
Q ss_pred ccccccccc-CCCCCCccccCCC
Q 004788 256 PVERNPLHA-FSKSPGLGTLSPI 277 (730)
Q Consensus 256 p~~~~~~~~-~g~S~gfGfvsp~ 277 (730)
+.+.+++.+ +++++|||||.+.
T Consensus 312 i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 312 ITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eEEEEEEECCCCCcCCeEEEEeC
Confidence 888888877 7999999999875
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=9.6e-25 Score=250.01 Aligned_cols=162 Identities=19% Similarity=0.385 Sum_probs=142.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..++|||+|||+++++++|+++|++||+|.+|.. +++++|||||+|.+.++|++|++.|+|..|.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4689999999999999999999999999999873 67899999999999999999999999999999999998654
Q ss_pred CCCCC-------CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHH
Q 004788 126 PKDNP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 126 pk~~~-------~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
..... ........+|||+||+.++++++|+++|+.||.|+++++ ++.++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 32111 011123468999999999999999999999999999975 345789999999999999999999
Q ss_pred hCCceeCCceEEEEecCCC
Q 004788 194 LNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 194 LnG~~I~Gr~IkV~~A~pk 212 (730)
||+.+|+|+.|+|.++.++
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999988754
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.4e-24 Score=220.66 Aligned_cols=164 Identities=20% Similarity=0.411 Sum_probs=147.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
.-.|||+.|.+.++.++|++.|.+||+|.+++ .+.|+|||+||.|.+.++|++||..|+|..|.+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 46799999999999999999999999998776 4789999999999999999999999999999999999999987
Q ss_pred CCCCCC------------CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHh
Q 004788 127 KDNPSE------------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 194 (730)
Q Consensus 127 k~~~~~------------~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~L 194 (730)
|..... .....++|||+|++..++|++|++.|+.||.|.+||+.+ .+||+||+|++.|+|.+||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHh
Confidence 653211 123467999999999999999999999999999999974 4699999999999999999999
Q ss_pred CCceeCCceEEEEecCCCchhh
Q 004788 195 NRSDINGKRIKLEPSRPGGARR 216 (730)
Q Consensus 195 nG~~I~Gr~IkV~~A~pk~~r~ 216 (730)
|+.+|.|..|++.|.+....-.
T Consensus 221 Nntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred cCceeCceEEEEeccccCCCCC
Confidence 9999999999999998776543
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=6.4e-24 Score=230.69 Aligned_cols=164 Identities=19% Similarity=0.332 Sum_probs=139.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCC--Ccceeee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHF 123 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G--r~L~V~~ 123 (730)
..++|||+|||.++++++|+++|++||.|..+.. .+.++|||||+|.+.++|++|++.|+|..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4679999999999999999999999999988762 45689999999999999999999999999877 5677777
Q ss_pred cCCCCCCCC----------------C------------------------------------------------------
Q 004788 124 SIPKDNPSE----------------K------------------------------------------------------ 133 (730)
Q Consensus 124 s~pk~~~~~----------------~------------------------------------------------------ 133 (730)
+........ .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643220000 0
Q ss_pred ------------------ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHH
Q 004788 134 ------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAA 190 (730)
Q Consensus 134 ------------------~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kA 190 (730)
.....+|||+|||+++++++|+++|++||.|.++++ ++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000125999999999999999999999999999975 567899999999999999999
Q ss_pred HHHhCCceeCCceEEEEecCCCch
Q 004788 191 LRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 191 L~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
++.|||..|+||.|+|.|..++..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999988764
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.7e-24 Score=217.08 Aligned_cols=160 Identities=24% Similarity=0.419 Sum_probs=144.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+..+.|.|.-||.++|++||+.+|...|+|++|+ .++.+.||+||.|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3467899999999999999999999999999998 57889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCcee
Q 004788 125 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDI 199 (730)
Q Consensus 125 ~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I 199 (730)
.|... ......|||.+||..+|..||+++|++||.|..-| +++.+||.+||+|+..++|+.||+.|||.+-
T Consensus 119 RPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 119 RPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred cCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 88544 34456899999999999999999999999987654 4778899999999999999999999999988
Q ss_pred CC--ceEEEEecCCCc
Q 004788 200 NG--KRIKLEPSRPGG 213 (730)
Q Consensus 200 ~G--r~IkV~~A~pk~ 213 (730)
.| ..|.|.|+....
T Consensus 195 ~g~tepItVKFannPs 210 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPS 210 (360)
T ss_pred CCCCCCeEEEecCCcc
Confidence 76 589999986543
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2e-23 Score=234.93 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=142.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.+.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++||. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3456899999999999999999999999999999883 56789999999999999999997 99999999999998
Q ss_pred ecCCCCCCCC--------CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHH
Q 004788 123 FSIPKDNPSE--------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEA 189 (730)
Q Consensus 123 ~s~pk~~~~~--------~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~k 189 (730)
++........ ......+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322111 1122578999999999999999999999999999865 34678999999999999999
Q ss_pred HHHHhCCceeCCceEEEEecCC
Q 004788 190 ALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 190 AL~~LnG~~I~Gr~IkV~~A~p 211 (730)
|++.|+|..|.|+.|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=2.7e-23 Score=236.24 Aligned_cols=164 Identities=26% Similarity=0.332 Sum_probs=141.4
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 49 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 49 e~psrtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..++++|||+||+. .+++++|+++|+.||.|..|+.....+|||||+|.+.++|++|++.|+|..|.|++|+|.++..+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45789999999998 69999999999999999999865556899999999999999999999999999999999987543
Q ss_pred CCCCC------------C---------------------ccCCceeEEecCCCcchHHHHHHHHcccCC--eEEEEecCC
Q 004788 128 DNPSE------------K---------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGE--VKEIRETPH 172 (730)
Q Consensus 128 ~~~~~------------~---------------------~~~~~tL~V~NLp~svTeedLreiFs~fG~--I~~Vritg~ 172 (730)
..... + .....+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11000 0 012458999999999999999999999998 888876433
Q ss_pred ---CccEEEEEEcCHHHHHHHHHHhCCceeCCce------EEEEecCCC
Q 004788 173 ---KRHHKFIEFYDVRAAEAALRALNRSDINGKR------IKLEPSRPG 212 (730)
Q Consensus 173 ---skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~------IkV~~A~pk 212 (730)
++++|||+|.+.++|.+||..||+..|.++. |+|.|++++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999874
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3.5e-23 Score=235.39 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=139.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHh--cccccCCCcceeeecCCCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~L--ng~~l~Gr~L~V~~s~pk~ 128 (730)
|+++|||+|||.++++++|+++|++||.|..|... +.++||||+|.+.++|++|++.+ ++..+.|++|+|.|+..+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~-~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML-PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 58999999999999999999999999999999854 46899999999999999999975 6788999999999986543
Q ss_pred CCCCC--------ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCC-ccEEEEEEcCHHHHHHHHHHhCCcee
Q 004788 129 NPSEK--------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALRALNRSDI 199 (730)
Q Consensus 129 ~~~~~--------~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~s-kG~AFVeF~d~e~A~kAL~~LnG~~I 199 (730)
..... .....+|+|.||++.+++++|+++|+.||+|.+|.+..+. +++|||+|.+.++|.+|++.|||..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 22111 0112379999999999999999999999999999764333 47999999999999999999999999
Q ss_pred CC--ceEEEEecCCCc
Q 004788 200 NG--KRIKLEPSRPGG 213 (730)
Q Consensus 200 ~G--r~IkV~~A~pk~ 213 (730)
.| +.|+|+|++++.
T Consensus 160 ~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 160 YNGCCTLKIEYAKPTR 175 (481)
T ss_pred cCCceEEEEEEecCCC
Confidence 64 589999998754
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=7.6e-23 Score=234.05 Aligned_cols=161 Identities=25% Similarity=0.437 Sum_probs=133.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccC-CCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~-Gr~L~V~~s~ 125 (730)
..++|||+|||.+++|++|+++|++||.|.+|+ .+++++|||||+|.+.++|++||+.|++..+. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 459999999999999999999999999999887 35789999999999999999999999987774 4544332221
Q ss_pred C-------------------------------------------------------------------------------
Q 004788 126 P------------------------------------------------------------------------------- 126 (730)
Q Consensus 126 p------------------------------------------------------------------------------- 126 (730)
.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 0
Q ss_pred -----CCCCCCC-ccCCceeEEecCCCcchHHHHHHHHccc--CCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 004788 127 -----KDNPSEK-DVNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 127 -----k~~~~~~-~~~~~tL~V~NLp~svTeedLreiFs~f--G~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
+....+. ....++|||+||+.++++++|+++|++| |+|+.|++. ++||||+|++.++|++|++.||+.+
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 0000000 0113579999999999999999999999 999999764 5799999999999999999999999
Q ss_pred eCCceEEEEecCCCch
Q 004788 199 INGKRIKLEPSRPGGA 214 (730)
Q Consensus 199 I~Gr~IkV~~A~pk~~ 214 (730)
|+|+.|+|+|+++...
T Consensus 294 i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDK 309 (578)
T ss_pred ECCEEEEEEEccCCCc
Confidence 9999999999988653
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.5e-22 Score=214.63 Aligned_cols=164 Identities=26% Similarity=0.481 Sum_probs=140.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccC-CCcceeee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 123 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~-Gr~L~V~~ 123 (730)
...+.|||+.||.++.|+||.-+|++.|+|-+++ .++.+||||||.|.+.++|++|++.||+..|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3468999999999999999999999999999887 47889999999999999999999999999885 77777765
Q ss_pred cC----------CCCCC------------------------CCCcc----------------------------------
Q 004788 124 SI----------PKDNP------------------------SEKDV---------------------------------- 135 (730)
Q Consensus 124 s~----------pk~~~------------------------~~~~~---------------------------------- 135 (730)
+. ||... ..+..
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 42 22110 00000
Q ss_pred -----------------CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 004788 136 -----------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 136 -----------------~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
.-+.|||+||+.++|+|.|+++|++||.|+.|+.. +.||||.|.+.++|.+|++.+||++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCce
Confidence 02479999999999999999999999999999754 5699999999999999999999999
Q ss_pred eCCceEEEEecCCCchhh
Q 004788 199 INGKRIKLEPSRPGGARR 216 (730)
Q Consensus 199 I~Gr~IkV~~A~pk~~r~ 216 (730)
|+|..|.|.+|+|-..++
T Consensus 318 ldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 318 LDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ecCceEEEEecCChhhhc
Confidence 999999999999977654
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=4.8e-22 Score=226.62 Aligned_cols=163 Identities=17% Similarity=0.273 Sum_probs=135.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcc------------CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccccc
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 114 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~f------------G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l 114 (730)
......++|||+|||+++|+++|+++|..| +.|..+. ..+.+|||||+|.+.++|.+||. |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345668999999999999999999999975 3455554 45789999999999999999995 999999
Q ss_pred CCCcceeeecCCCCCC-------------------------CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe
Q 004788 115 RRRKLDIHFSIPKDNP-------------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 169 (730)
Q Consensus 115 ~Gr~L~V~~s~pk~~~-------------------------~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri 169 (730)
.|+.|+|......... ........+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999643211100 000112468999999999999999999999999998864
Q ss_pred -----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 170 -----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 170 -----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.++..
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 466799999999999999999999999999999999999864
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.6e-22 Score=214.57 Aligned_cols=164 Identities=23% Similarity=0.438 Sum_probs=142.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccc-cCC--Cccee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDI 121 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~-l~G--r~L~V 121 (730)
.+.-+|||+-||..++|+||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4467999999999999999999999999999886 467899999999999999999999998865 444 57888
Q ss_pred eecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCc
Q 004788 122 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRS 197 (730)
Q Consensus 122 ~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~ 197 (730)
+|+..+.+. -..+++|||+-|++.++|.|++++|++||.|++|++ .+.+||||||+|.+.|.|..||++|||.
T Consensus 112 k~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 887554332 245778999999999999999999999999999964 5678999999999999999999999998
Q ss_pred -eeCC--ceEEEEecCCCchhh
Q 004788 198 -DING--KRIKLEPSRPGGARR 216 (730)
Q Consensus 198 -~I~G--r~IkV~~A~pk~~r~ 216 (730)
.+.| ..|.|.|+.++..|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 5666 689999998877654
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=1.1e-20 Score=215.33 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=135.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
...++|||+|||..+++++|+++|+.||.|..+.. +++++|||||+|.+.++|..|++.|+|..|.|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999988762 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCC------------------------CccCCceeEEecCCCc----------chHHHHHHHHcccCCeEEEEec
Q 004788 125 IPKDNPSE------------------------KDVNQGTLVVFNLDAS----------VSNDDLRQIFGAYGEVKEIRET 170 (730)
Q Consensus 125 ~pk~~~~~------------------------~~~~~~tL~V~NLp~s----------vTeedLreiFs~fG~I~~Vrit 170 (730)
........ ......+|+|.|+... ...++|+++|++||.|+.|.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 53321100 0113457899998532 1236899999999999999763
Q ss_pred C--------CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 171 P--------HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 171 g--------~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
. ..+|++||+|.++++|++|+..|||.+|+|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 2 2368999999999999999999999999999999999754
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=3.5e-21 Score=186.59 Aligned_cols=162 Identities=23% Similarity=0.313 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
...||||+||+..++++.|+++|-+.|+|..+. .+..++|||||+|.++|+|+.|++-|+...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 468999999999999999999999999999997 466799999999999999999999999999999999998776
Q ss_pred CCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEE------EecCCCccEEEEEEcCHHHHHHHHHHhCCcee
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALRALNRSDI 199 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~V------ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I 199 (730)
... .......+|||+||++.+++..|.+.|+.||.+... ..++.+++++||.|.+.|.+.+|+..|||..+
T Consensus 88 ~~~---~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 88 AHQ---KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred ccc---ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 211 122234689999999999999999999999987653 24678899999999999999999999999999
Q ss_pred CCceEEEEecCCCchh
Q 004788 200 NGKRIKLEPSRPGGAR 215 (730)
Q Consensus 200 ~Gr~IkV~~A~pk~~r 215 (730)
.+++|.|+++..++.+
T Consensus 165 ~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDTK 180 (203)
T ss_pred cCCceEEEEEEecCCC
Confidence 9999999999776544
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-20 Score=206.41 Aligned_cols=196 Identities=20% Similarity=0.350 Sum_probs=163.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEE---eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~---~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
..|||+ ++|||.+|.++|+++|+|.+++ ... +-|||||.|.+.++|++||+++|...+.|++++|-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 468999 8999999999999999998876 333 999999999999999999999999999999999999865433
Q ss_pred CCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEE
Q 004788 130 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 206 (730)
Q Consensus 130 ~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV 206 (730)
. |||.||+++++..+|.++|+.||.|.+|++ ...++|| ||+|+++++|.+|++.+||..+.|++|.|
T Consensus 78 ~---------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 L---------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred e---------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 2 999999999999999999999999999975 2237899 99999999999999999999999999999
Q ss_pred EecCCCchhhhhhhh------------chhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc-CCCCCCccc
Q 004788 207 EPSRPGGARRNLMQQ------------LNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGT 273 (730)
Q Consensus 207 ~~A~pk~~r~~~~~q------------l~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~-~g~S~gfGf 273 (730)
.....+..|...... ......++.+. ..|..+|.+....+|.+ .+.+++|||
T Consensus 148 g~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~---------------~~f~~~g~i~s~~v~~~~~g~~~~~gf 212 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELK---------------DLFSAYGSITSVAVMRDSIGKSKGFGF 212 (369)
T ss_pred eeccchhhhcccccchhhhhhhhheeccccccchHHHH---------------HhhcccCcceEEEEeecCCCCCCCccc
Confidence 998877665432221 11111222222 45778888888888877 677999999
Q ss_pred cCCC
Q 004788 274 LSPI 277 (730)
Q Consensus 274 vsp~ 277 (730)
|.+-
T Consensus 213 v~f~ 216 (369)
T KOG0123|consen 213 VNFE 216 (369)
T ss_pred eeec
Confidence 9764
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=6.1e-21 Score=195.93 Aligned_cols=150 Identities=29% Similarity=0.433 Sum_probs=138.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 132 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~ 132 (730)
-+|||+|||.++++.+|+.+|++||+|.+|.+ -|.|+||..++...|+.|++.|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999984 46899999999999999999999999999999999887653
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
....+|+|+||.+.++.+||+..|++||.|.++++. ++|+||.|+-.++|..|++.|+++++.|++++|..+.++
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 335689999999999999999999999999999985 689999999999999999999999999999999998765
Q ss_pred ch
Q 004788 213 GA 214 (730)
Q Consensus 213 ~~ 214 (730)
-.
T Consensus 151 lr 152 (346)
T KOG0109|consen 151 LR 152 (346)
T ss_pred cc
Confidence 43
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.8e-20 Score=202.60 Aligned_cols=162 Identities=22% Similarity=0.365 Sum_probs=143.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
.||||++||++++.++|.++|+.+|+|..+.. ...+|||+||.|.-.+|+++|++.+.+..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999872 4468999999999999999999999999999999999988655
Q ss_pred CCCCC--------------------C--ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEE
Q 004788 128 DNPSE--------------------K--DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEF 181 (730)
Q Consensus 128 ~~~~~--------------------~--~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF 181 (730)
..... . +...-.|.|+|||+.+.+.+|+.+|+.||.|.+|.+ .++-+|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 33210 0 011348999999999999999999999999999976 345579999999
Q ss_pred cCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 182 YDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 182 ~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
.+..+|.+|++.+|+.+|+||.|-|.||-++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999988764
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.83 E-value=1.2e-19 Score=204.40 Aligned_cols=160 Identities=26% Similarity=0.394 Sum_probs=135.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
+++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 799999999999999999999999999998873 357899999999999999999999999999999999999531
Q ss_pred CCCC-----------------------------------C------------------------------C---------
Q 004788 127 KDNP-----------------------------------S------------------------------E--------- 132 (730)
Q Consensus 127 k~~~-----------------------------------~------------------------------~--------- 132 (730)
.... . .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1000 0 0
Q ss_pred ------------CccCCceeEEecCCCcch----------HHHHHHHHcccCCeEEEEec-CCCccEEEEEEcCHHHHHH
Q 004788 133 ------------KDVNQGTLVVFNLDASVS----------NDDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEA 189 (730)
Q Consensus 133 ------------~~~~~~tL~V~NLp~svT----------eedLreiFs~fG~I~~Vrit-g~skG~AFVeF~d~e~A~k 189 (730)
......+|+|.||-...+ .+||++.|++||.|..|.+. +...|++||+|.+.++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 001235788888844333 36899999999999999875 6778999999999999999
Q ss_pred HHHHhCCceeCCceEEEEecCC
Q 004788 190 ALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 190 AL~~LnG~~I~Gr~IkV~~A~p 211 (730)
|++.|||+.|+|+.|.|.|...
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcH
Confidence 9999999999999999999864
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.8e-19 Score=193.76 Aligned_cols=224 Identities=17% Similarity=0.311 Sum_probs=174.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
.+.|||.||+++++.++|.++|+.||+|.+|+. ..-++|| ||+|.+.++|++|++.+||..+.+++|.|.....+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 344999999999999999999999999999983 2338999 999999999999999999999999999998876654
Q ss_pred CCCCC----ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 129 NPSEK----DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 129 ~~~~~----~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
..... ......++|.|++.+++++.|.+.|..||.|..+.+ .+++++|+||.|.+.++|..|++.|++..+.
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 43222 223457999999999999999999999999999864 4557899999999999999999999999999
Q ss_pred CceEEEEecCCCchhhhhhhhchhhhhHHHHHhhhhccCCCCCCCC--------CCcccCCCCccccccccc-CCCCCCc
Q 004788 201 GKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGSPVTNSP--------PGTWAQFGSPVERNPLHA-FSKSPGL 271 (730)
Q Consensus 201 Gr~IkV~~A~pk~~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~sp--------p~~f~~~Gsp~~~~~~~~-~g~S~gf 271 (730)
++.+.|..+..+..+...+..........+...+ ........+.+ -..|..+|.++..++|.+ .+++.||
T Consensus 235 ~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~-~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~ 313 (369)
T KOG0123|consen 235 DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSL-QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGF 313 (369)
T ss_pred ccceeecccccchhhHHHHhhhhHhhhhhccccc-cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccce
Confidence 9999999998865554433322111111111000 01111112211 245778999999888876 8999999
Q ss_pred cccCCC
Q 004788 272 GTLSPI 277 (730)
Q Consensus 272 Gfvsp~ 277 (730)
|||+..
T Consensus 314 gfV~fs 319 (369)
T KOG0123|consen 314 GFVEFS 319 (369)
T ss_pred EEEEcC
Confidence 999876
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=8.4e-19 Score=192.13 Aligned_cols=168 Identities=21% Similarity=0.408 Sum_probs=143.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
+.-+|.|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||+|.+..+|.+|++.+|+..|.||+|-|.|+.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 3679999999999999999999999999999983 455669999999999999999999999999999999999865
Q ss_pred CCCCC-----------------------------------------CC--cc----------------------------
Q 004788 127 KDNPS-----------------------------------------EK--DV---------------------------- 135 (730)
Q Consensus 127 k~~~~-----------------------------------------~~--~~---------------------------- 135 (730)
++... +. +.
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 52100 00 00
Q ss_pred ---------------CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHh-
Q 004788 136 ---------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL- 194 (730)
Q Consensus 136 ---------------~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~L- 194 (730)
...+|||+|||+++|+++|.+.|++||+|.++.+ +++++|.|||.|.+..+|.+||...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0148999999999999999999999999998853 7889999999999999999999976
Q ss_pred ----CC-ceeCCceEEEEecCCCchhhhh
Q 004788 195 ----NR-SDINGKRIKLEPSRPGGARRNL 218 (730)
Q Consensus 195 ----nG-~~I~Gr~IkV~~A~pk~~r~~~ 218 (730)
.| ..|.||.|+|..+-.+.+...+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHHHHHH
Confidence 34 5789999999999887765543
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=6.1e-18 Score=171.41 Aligned_cols=162 Identities=19% Similarity=0.331 Sum_probs=136.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCC--Ccceeee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHF 123 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G--r~L~V~~ 123 (730)
....|||.+||..+|..||+++|++||.|..-+ .++.+||.+||.|...++|+.|++.|||..-.| .+|.|+|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 468999999999999999999999999986543 578899999999999999999999999988765 4788888
Q ss_pred cCCCCCCC------------------------CC-----------------------------------ccCCceeEEec
Q 004788 124 SIPKDNPS------------------------EK-----------------------------------DVNQGTLVVFN 144 (730)
Q Consensus 124 s~pk~~~~------------------------~~-----------------------------------~~~~~tL~V~N 144 (730)
+....... .+ .....+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 74221100 00 00023799999
Q ss_pred CCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 145 LDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 145 Lp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
|.++.+|.-|.++|.+||.|..|++ +.+.|||+||.+.+.++|..|+..|||..+++|.|.|.|...+
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999998865 4567999999999999999999999999999999999997654
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.2e-18 Score=175.74 Aligned_cols=189 Identities=23% Similarity=0.321 Sum_probs=137.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
...|||||+||+.+|||+-|..||.+.|.|+++++. |. .|+|.|+.....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCccc
Confidence 456999999999999999999999999999998742 11 345555543332
Q ss_pred CCCCccC-CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 004788 130 PSEKDVN-QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 203 (730)
Q Consensus 130 ~~~~~~~-~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~ 203 (730)
.+....+ .--+||+.|...++.++||+.|.+||+|.++++ +.++|||+||.|.+.++|++||..|||.+|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 2222222 346999999999999999999999999998865 7789999999999999999999999999999999
Q ss_pred EEEEecCCCchhhhhhhhchhhhhHHHHHhhhhccCC--CCCCCC--------CCcccCCCCcccccccccCCCCCCccc
Q 004788 204 IKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVGS--PVTNSP--------PGTWAQFGSPVERNPLHAFSKSPGLGT 273 (730)
Q Consensus 204 IkV~~A~pk~~r~~~~~ql~~~~~q~~~~~~~~~~G~--p~~~sp--------p~~f~~~Gsp~~~~~~~~~g~S~gfGf 273 (730)
|+-.|+..|..+..--+ ++-+++-.....-.. ...+.+ ...|++||.+.+.++..+ .||-|
T Consensus 134 IRTNWATRKp~e~n~~~-----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaF 204 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKP-----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAF 204 (321)
T ss_pred eeccccccCccccCCCC-----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEE
Confidence 99999976653322111 111221111000000 001111 257999999999999865 56889
Q ss_pred cCCC
Q 004788 274 LSPI 277 (730)
Q Consensus 274 vsp~ 277 (730)
|.+.
T Consensus 205 VrF~ 208 (321)
T KOG0148|consen 205 VRFE 208 (321)
T ss_pred EEec
Confidence 8875
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.2e-18 Score=183.09 Aligned_cols=159 Identities=19% Similarity=0.403 Sum_probs=139.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
-++|||+.|.+++.|+.|+..|..||+|++|. .+++++|||||+|+-+|.|+-|++.|||..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999998 5889999999999999999999999999999999999985422
Q ss_pred CCCC-------CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHh
Q 004788 127 KDNP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL 194 (730)
Q Consensus 127 k~~~-------~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~L 194 (730)
-... .++.....+|||..+.++++++||+.+|+.||+|..|.+ ....|||+||||.+..+-..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 1110 111223568999999999999999999999999999975 3356899999999999999999999
Q ss_pred CCceeCCceEEEEecC
Q 004788 195 NRSDINGKRIKLEPSR 210 (730)
Q Consensus 195 nG~~I~Gr~IkV~~A~ 210 (730)
|-..++|.-|+|..+-
T Consensus 273 NlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCV 288 (544)
T ss_pred chhhcccceEeccccc
Confidence 9999999999997664
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=5.4e-18 Score=191.20 Aligned_cols=162 Identities=26% Similarity=0.455 Sum_probs=140.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~--------ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
++|||+||+.+.+.++|..+|..+|.|.++.+.. .+.|||||+|.+.++|+.|++.|+|+.|.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3399999999999999999999999999986321 24499999999999999999999999999999999998
Q ss_pred CCCCCC-----CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCC-----CccEEEEEEcCHHHHHHHHHHh
Q 004788 125 IPKDNP-----SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALRAL 194 (730)
Q Consensus 125 ~pk~~~-----~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~-----skG~AFVeF~d~e~A~kAL~~L 194 (730)
..+... .......+.|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-+.++|.+|+++|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 722111 111122468999999999999999999999999999987443 4789999999999999999999
Q ss_pred CCceeCCceEEEEecCCCch
Q 004788 195 NRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 195 nG~~I~Gr~IkV~~A~pk~~ 214 (730)
..+.+.||+|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999988765
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=5e-17 Score=163.24 Aligned_cols=163 Identities=26% Similarity=0.450 Sum_probs=143.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHH----HhhccCCEEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRS----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~----lF~~fG~I~~V~--~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
+..++.||||.||+..+..++|+. +|++||.|..|. .+.+.+|-|||.|.+.+.|-.|+++|+|..+.|+.++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345677999999999999999988 999999999987 57789999999999999999999999999999999999
Q ss_pred eecCCCCCCCCC----------------------------------------------ccCCceeEEecCCCcchHHHHH
Q 004788 122 HFSIPKDNPSEK----------------------------------------------DVNQGTLVVFNLDASVSNDDLR 155 (730)
Q Consensus 122 ~~s~pk~~~~~~----------------------------------------------~~~~~tL~V~NLp~svTeedLr 155 (730)
+|+..+.....+ ...+..|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 998654321110 1234589999999999999999
Q ss_pred HHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEecC
Q 004788 156 QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSR 210 (730)
Q Consensus 156 eiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~-Gr~IkV~~A~ 210 (730)
.+|.+|...++|+.....++.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999987777899999999999999999999999886 8889988875
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=161.57 Aligned_cols=166 Identities=23% Similarity=0.428 Sum_probs=137.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhccccc-CC--Ccceeee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPL-RR--RKLDIHF 123 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l-~G--r~L~V~~ 123 (730)
+.|+|||+-|.+.-.|||++.+|..||.|.+|. .++.+||||||+|.+..+|+.||..|+|..- -| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 579999999999999999999999999999987 4677999999999999999999999998542 22 2344444
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 004788 124 SIPKDNP------------------------------------------------------------------------- 130 (730)
Q Consensus 124 s~pk~~~------------------------------------------------------------------------- 130 (730)
+...++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 3211000
Q ss_pred --------------------------------------------------------------------------------
Q 004788 131 -------------------------------------------------------------------------------- 130 (730)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (730)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCH
Q 004788 131 ---------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDV 184 (730)
Q Consensus 131 ---------------------~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~ 184 (730)
..+..+.++|||-.||.+..+.||.++|-.||.|.+.+ -+..+|.|+||.|++.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00000134899999999999999999999999998874 3778899999999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEecCCCchhh
Q 004788 185 RAAEAALRALNRSDINGKRIKLEPSRPGGARR 216 (730)
Q Consensus 185 e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r~ 216 (730)
.+|+.||.+|||..|+-|+|+|...+|++..|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999998654
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=2.9e-15 Score=172.42 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..++|||+||++++++++|+++|+.||+|.+++. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4589999999999999999999999999999872 46789999999999999999999999999999999987754
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1e-15 Score=148.92 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=126.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCC--cccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~k--srG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..+++|||+|||.++-+.||+++|.+||.|+.|..... ...||||+|++.++|+.||..-+|..+.|..|+|+|....
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 35799999999999999999999999999999985433 3579999999999999999999999999999999998543
Q ss_pred CCCC----------------------CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHH
Q 004788 128 DNPS----------------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 185 (730)
Q Consensus 128 ~~~~----------------------~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e 185 (730)
.... .....+..|.|++||.+.++++|+++..+.|+|....+.. .+.+.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccceeeeeeehh
Confidence 2110 0111245899999999999999999999999999887753 468999999999
Q ss_pred HHHHHHHHhCCceeC
Q 004788 186 AAEAALRALNRSDIN 200 (730)
Q Consensus 186 ~A~kAL~~LnG~~I~ 200 (730)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999877653
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=7.1e-15 Score=168.94 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHhcccccCCCcceeeecCCCCCC-CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCC
Q 004788 98 DIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP-SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPH 172 (730)
Q Consensus 98 d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~-~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~ 172 (730)
-.++|.+||.+++|..+........|..|.... .......++|||+|||.++++++|+++|++||.|.+|++ +++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 368899999999998887777777776443221 111223578999999999999999999999999999875 567
Q ss_pred CccEEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEecCCCchhhhhhhhchhhhhHHHHHhhhhccC
Q 004788 173 KRHHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPGGARRNLMQQLNQELEQDEARGFRHQVG 239 (730)
Q Consensus 173 skG~AFVeF~d~e~A~kAL~~LnG~~I~-Gr~IkV~~A~pk~~r~~~~~ql~~~~~q~~~~~~~~~~G 239 (730)
++|||||+|.+.++|++||+.||+.+|. |+.|.|..+.. .++.++.++....+++++...+.+++
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~--~~rLFVgNLP~~~TeeeL~eeFskv~ 163 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD--NCRLFVGGIPKNKKREEILEEFSKVT 163 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc--CceeEeecCCcchhhHHHHHHhhccc
Confidence 8999999999999999999999999985 88888887754 45678889988888888887765553
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.63 E-value=1.8e-16 Score=175.07 Aligned_cols=167 Identities=22% Similarity=0.348 Sum_probs=142.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 44 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 44 e~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
.....|+..||||+--|...++..+|.++|+.+|+|+.|. ....++|.|||+|.|.+....|+. |.|..+.|.+
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~p 249 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVP 249 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCce
Confidence 3344567789999999999999999999999999999987 466799999999999999999996 9999999999
Q ss_pred ceeeecCCCCCCCCC----------ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcC
Q 004788 119 LDIHFSIPKDNPSEK----------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD 183 (730)
Q Consensus 119 L~V~~s~pk~~~~~~----------~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d 183 (730)
|.|+......+.... ..+-..|||+||...+++++|+.+|+.||.|..|.. ++..+||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 999876433221100 011223999999999999999999999999999843 77889999999999
Q ss_pred HHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 184 VRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 184 ~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|.+|++.|||.+|.|+.|+|..-..
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999987543
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=9.8e-16 Score=163.76 Aligned_cols=163 Identities=17% Similarity=0.382 Sum_probs=141.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
+.++|||++|+.+++++.|++.|.+||+|.+|. .+++++||+||+|.+.+...++|. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 679999999999999999999999999999887 367899999999999999999987 45577899999999888
Q ss_pred CCCCCCCCcc--CCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 004788 126 PKDNPSEKDV--NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 126 pk~~~~~~~~--~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
+......... ...+|||++|+.+++++++++.|.+||.|..+. .+.+.++|+||.|.+++.+.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 7765433322 356899999999999999999999999887773 255779999999999999999986 67889
Q ss_pred eCCceEEEEecCCCchh
Q 004788 199 INGKRIKLEPSRPGGAR 215 (730)
Q Consensus 199 I~Gr~IkV~~A~pk~~r 215 (730)
|.|+.+.|..|.|+...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999987643
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1e-15 Score=164.42 Aligned_cols=164 Identities=23% Similarity=0.428 Sum_probs=139.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccc-cCC--Ccceeee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIHF 123 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~-l~G--r~L~V~~ 123 (730)
+.++|||+-|++.++|.||+++|.+||.|++|+ ..+.+||||||+|.+.|.|..||++|||.. ++| .+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 478999999999999999999999999999998 367899999999999999999999999954 444 5788888
Q ss_pred cCCCCCCCCCc---------------------------------------------------------------------
Q 004788 124 SIPKDNPSEKD--------------------------------------------------------------------- 134 (730)
Q Consensus 124 s~pk~~~~~~~--------------------------------------------------------------------- 134 (730)
+.+++....+.
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 75543210000
Q ss_pred --------------------------------------------------------------------------------
Q 004788 135 -------------------------------------------------------------------------------- 134 (730)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (730)
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence
Q ss_pred -----------------------------------------------------------cCCceeEEecCCCcchHHHHH
Q 004788 135 -----------------------------------------------------------VNQGTLVVFNLDASVSNDDLR 155 (730)
Q Consensus 135 -----------------------------------------------------------~~~~tL~V~NLp~svTeedLr 155 (730)
.....|||.+||.+.-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 001269999999999999999
Q ss_pred HHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 156 QIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 156 eiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
..|..||.|++.+ .++-++.|+||.|++..+|..||..|||..|+.++++|...+.+..
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999998874 3667799999999999999999999999999999999999887654
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=5.8e-15 Score=166.96 Aligned_cols=215 Identities=22% Similarity=0.350 Sum_probs=161.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
.++..+.|+|+|||..+..++|..+|..||+|..|... ..--.|+|.|.+..+|++|++.|....+...++++.|+...
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 34556899999999999999999999999999998644 33345999999999999999999999988888887665211
Q ss_pred C-------C-------------CC------------CCc-------------cC-CceeEEecCCCcchHHHHHHHHccc
Q 004788 128 D-------N-------------PS------------EKD-------------VN-QGTLVVFNLDASVSNDDLRQIFGAY 161 (730)
Q Consensus 128 ~-------~-------------~~------------~~~-------------~~-~~tL~V~NLp~svTeedLreiFs~f 161 (730)
. . +. .++ .. ..+|||+||+++++.++|...|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 0 0 00 000 00 1249999999999999999999999
Q ss_pred CCeEEEEecCC--------CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC--------CCchh-----hhhhh
Q 004788 162 GEVKEIRETPH--------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR--------PGGAR-----RNLMQ 220 (730)
Q Consensus 162 G~I~~Vritg~--------skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~--------pk~~r-----~~~~~ 220 (730)
|.|..+.+..+ +.|||||+|.+.++|++|++.|+|+.|+|+.|.|.++. ++... +-+++
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeee
Confidence 99999966322 24999999999999999999999999999999999998 11111 12444
Q ss_pred hchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccc--ccCCCCCCccccCCCC
Q 004788 221 QLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPL--HAFSKSPGLGTLSPIN 278 (730)
Q Consensus 221 ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~--~~~g~S~gfGfvsp~~ 278 (730)
++.-+....+++.++. .||-..+.++. ...+.+||||||..+.
T Consensus 620 NipFeAt~rEVr~LF~---------------aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFT---------------AFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred ccchHHHHHHHHHHHh---------------cccceeeeccchhhcchhhccceeeeccC
Confidence 5555555556665544 44444444333 2356679999998773
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.59 E-value=2.6e-12 Score=138.45 Aligned_cols=158 Identities=23% Similarity=0.378 Sum_probs=130.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhh-ccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~-~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
.|.+||+|||+++..++|++||. +.|+|+.|. ..+|.||||.|+|+++|.+++|++.|+...+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 57799999999999999999997 678999887 5889999999999999999999999999999999999854311
Q ss_pred CCC------------------------------------------CCCCc------------------------------
Q 004788 127 KDN------------------------------------------PSEKD------------------------------ 134 (730)
Q Consensus 127 k~~------------------------------------------~~~~~------------------------------ 134 (730)
... ..+++
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 00000
Q ss_pred ---------cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 004788 135 ---------VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDING 201 (730)
Q Consensus 135 ---------~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G 201 (730)
....++||.||...+....|++.|.-.|.|+.|.+ .+.++|++.|+|..+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 00237899999999999999999999999988843 56788999999999999999999999877777
Q ss_pred ceEEEEec
Q 004788 202 KRIKLEPS 209 (730)
Q Consensus 202 r~IkV~~A 209 (730)
++..+...
T Consensus 284 ~~~~~Rl~ 291 (608)
T KOG4212|consen 284 RRMTVRLD 291 (608)
T ss_pred ccceeecc
Confidence 77776653
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=4.4e-15 Score=162.21 Aligned_cols=128 Identities=21% Similarity=0.340 Sum_probs=109.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||+++|+++|+++|+.||.|++|++ ++++++||||+|.++++|++|++.|++..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34679999999999999999999999999999875 4567899999999999999999999999999999999999
Q ss_pred CCCc----hhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 210 RPGG----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 210 ~pk~----~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
++.. ..+.++..+...+++++++.++. .||.+...+++.+ +++++||+||.+.
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~---------------~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFG---------------KYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHH---------------hcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 8743 23457888999999999998754 4555666666655 8899999999875
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.56 E-value=1.2e-14 Score=160.82 Aligned_cols=160 Identities=23% Similarity=0.376 Sum_probs=128.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
|-+.|||+||..++++++|+.+|+.||.|..|. .++.++||+||+|.+.++|++|+..|||..|-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 344499999999999999999999999999987 378899999999999999999999999999999999986542
Q ss_pred CCCCCCCC-------c----------------------------------------------------------------
Q 004788 126 PKDNPSEK-------D---------------------------------------------------------------- 134 (730)
Q Consensus 126 pk~~~~~~-------~---------------------------------------------------------------- 134 (730)
.+-...+. +
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 21100000 0
Q ss_pred ----cCCceeEEecC--CCcch--------HHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 135 ----VNQGTLVVFNL--DASVS--------NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 135 ----~~~~tL~V~NL--p~svT--------eedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
....++.++|+ |...| .+++.+.+.+||.|..|.++..+-|+.||.|.+.++|..|+++|||.+|.
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 00112333333 11111 36788888999999999998888899999999999999999999999999
Q ss_pred CceEEEEecC
Q 004788 201 GKRIKLEPSR 210 (730)
Q Consensus 201 Gr~IkV~~A~ 210 (730)
||.|++.|-.
T Consensus 517 gr~Ita~~~~ 526 (549)
T KOG0147|consen 517 GRMITAKYLP 526 (549)
T ss_pred cceeEEEEee
Confidence 9999999864
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.1e-14 Score=145.46 Aligned_cols=150 Identities=27% Similarity=0.434 Sum_probs=129.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCCC-
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS- 131 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~- 131 (730)
..|||++||+.+.+++|..+|..||.|..+.. ..||+||+|.+..+|..|+..++++.|.+.++.|.|+.......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46999999999999999999999999999873 46889999999999999999999999999888888887421100
Q ss_pred ---------------CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC
Q 004788 132 ---------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR 196 (730)
Q Consensus 132 ---------------~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG 196 (730)
........|.|.++...+.+.+|.+.|..+|.+.+... ..+++||+|...++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 00123457999999999999999999999999965544 578999999999999999999999
Q ss_pred ceeCCceEEEEe
Q 004788 197 SDINGKRIKLEP 208 (730)
Q Consensus 197 ~~I~Gr~IkV~~ 208 (730)
.++.++.|++..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999933
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.48 E-value=7e-13 Score=142.08 Aligned_cols=161 Identities=25% Similarity=0.320 Sum_probs=137.1
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCC
Q 004788 52 SRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 130 (730)
Q Consensus 52 srtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~ 130 (730)
+..|.|.||.+ .||.+.|..+|..||+|..|++-.+.+--|.|+|.|...|+-|++.|+|..+.|++|+|.+++-..-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 58999999975 49999999999999999999976667789999999999999999999999999999999988532110
Q ss_pred ------CC--------------------C-----ccCCceeEEecCCCcchHHHHHHHHcccCCe-EEEEecCCCccEEE
Q 004788 131 ------SE--------------------K-----DVNQGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRETPHKRHHKF 178 (730)
Q Consensus 131 ------~~--------------------~-----~~~~~tL~V~NLp~svTeedLreiFs~fG~I-~~Vritg~skG~AF 178 (730)
.. + -....+|.+.|+|.+++||+|+..|..-|-. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 00 0 0123589999999999999999999998754 55677777788999
Q ss_pred EEEcCHHHHHHHHHHhCCceeCC-ceEEEEecCCC
Q 004788 179 IEFYDVRAAEAALRALNRSDING-KRIKLEPSRPG 212 (730)
Q Consensus 179 VeF~d~e~A~kAL~~LnG~~I~G-r~IkV~~A~pk 212 (730)
+.+.++|+|..|+..++.+.+++ ..++|+|++..
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999976 59999999763
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.45 E-value=5e-13 Score=128.99 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
..+++|||+|||.+++|++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999873 5678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004788 125 IPKDN 129 (730)
Q Consensus 125 ~pk~~ 129 (730)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.44 E-value=1.5e-12 Score=139.53 Aligned_cols=167 Identities=25% Similarity=0.388 Sum_probs=137.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhcccccC--CCcceeeecC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSI 125 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~-AFV~F~d~e~A~kAl~~Lng~~l~--Gr~L~V~~s~ 125 (730)
..+--+++|.|+-.-|+-+-|..+|++||.|..|.+..|..+| |.|+|.|.+.|+.|..+|+|..|. .+.|+|.|++
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 3345678899999999999999999999999999987788886 999999999999999999998874 3567776652
Q ss_pred CC----------CCC-------CC--------------------------------------C--cc--CCceeEEecCC
Q 004788 126 PK----------DNP-------SE--------------------------------------K--DV--NQGTLVVFNLD 146 (730)
Q Consensus 126 pk----------~~~-------~~--------------------------------------~--~~--~~~tL~V~NLp 146 (730)
-. ... .. . .. ....|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 11 000 00 0 00 02467888886
Q ss_pred C-cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchh
Q 004788 147 A-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 215 (730)
Q Consensus 147 ~-svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r 215 (730)
. .+|.+.|..+|+.||+|..|++.-+++..|.|+|.|...|+-|++.|+|..+.||+|+|.+++.....
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5 58999999999999999999987777789999999999999999999999999999999999876543
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=5.2e-13 Score=128.83 Aligned_cols=78 Identities=26% Similarity=0.473 Sum_probs=71.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+||++++++++|+++|++||.|++|++ ++++++||||+|.+.++|++|++.||+.+|+|+.|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999865 45679999999999999999999999999999999999997
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 653
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.43 E-value=3.2e-12 Score=134.95 Aligned_cols=164 Identities=15% Similarity=0.245 Sum_probs=132.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEE----------E--eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL----------Y--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V----------~--~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
.-++.|||.|||.++|.+++.++|++||-|..- + ..++.+|-|.+.|...+++.-|++-|++..|+|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 346779999999999999999999999987532 2 4677899999999999999999999999999999
Q ss_pred cceeeecCCCC----------C--C----------------------CCCccCCceeEEecCC--C--cch-------HH
Q 004788 118 KLDIHFSIPKD----------N--P----------------------SEKDVNQGTLVVFNLD--A--SVS-------ND 152 (730)
Q Consensus 118 ~L~V~~s~pk~----------~--~----------------------~~~~~~~~tL~V~NLp--~--svT-------ee 152 (730)
+|+|+.+.-.. + . ..+....++|.++|+= . ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99997663110 0 0 0111224689999972 1 111 46
Q ss_pred HHHHHHcccCCeEEEEe-cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 153 DLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 153 dLreiFs~fG~I~~Vri-tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
+|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.++||+|..+...-+.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 78888999999999865 45778999999999999999999999999999999988765443
No 48
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.39 E-value=3.7e-12 Score=127.53 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=115.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE--eCCC----cccEEEEEEcCHHHHHHHHHHhcccccC---CCccee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACK----HRGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 121 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~--~~~k----srG~AFV~F~d~e~A~kAl~~Lng~~l~---Gr~L~V 121 (730)
.-|||||.+||.++...||+.+|..|--.+.+. .+.+ .+-+|||.|.+.++|..|+.+|||..|+ +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999886555443 3333 3479999999999999999999999885 667777
Q ss_pred eecCCCCCCCC---------------------------------------------------Ccc---------------
Q 004788 122 HFSIPKDNPSE---------------------------------------------------KDV--------------- 135 (730)
Q Consensus 122 ~~s~pk~~~~~---------------------------------------------------~~~--------------- 135 (730)
++++...+..+ .+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 77632110000 000
Q ss_pred ----------------CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCC-CccEEEEEEcCHHHHHHHHHHhCCce
Q 004788 136 ----------------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 136 ----------------~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~-skG~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
...||||-||..+++|++|+++|+.|-....+++..+ ....||++|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0238999999999999999999999976555555322 23579999999999999999999887
Q ss_pred e
Q 004788 199 I 199 (730)
Q Consensus 199 I 199 (730)
|
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 6
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.30 E-value=1.9e-11 Score=134.15 Aligned_cols=156 Identities=17% Similarity=0.293 Sum_probs=124.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE---eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~---~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
.-.|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..|-|.|--+..++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 46788999999999999999999986 66655 468899999999999999999999 67777888888886554332
Q ss_pred CC-------CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEE-E----EecCCCccEEEEEEcCHHHHHHHHHHhCC
Q 004788 129 NP-------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-I----RETPHKRHHKFIEFYDVRAAEAALRALNR 196 (730)
Q Consensus 129 ~~-------~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~-V----ritg~skG~AFVeF~d~e~A~kAL~~LnG 196 (730)
.. .....+...|.+++||+.||++||.++|+..-.|.. | ...+++.+-|||+|++.+.|++||.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 21 111235668999999999999999999997644433 2 22445678999999999999999974 77
Q ss_pred ceeCCceEEEEecC
Q 004788 197 SDINGKRIKLEPSR 210 (730)
Q Consensus 197 ~~I~Gr~IkV~~A~ 210 (730)
..|+-|-|.|-.+.
T Consensus 167 e~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSS 180 (510)
T ss_pred HhhccceEEeehhH
Confidence 78888888887764
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=6e-12 Score=104.15 Aligned_cols=66 Identities=35% Similarity=0.619 Sum_probs=61.3
Q ss_pred eEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 140 LVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 140 L~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
|||+|||.++++++|+++|++||.|..+++ .+..+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988865 345689999999999999999999999999999986
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=5.8e-12 Score=104.25 Aligned_cols=66 Identities=29% Similarity=0.591 Sum_probs=61.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 55 LfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
|||+|||.++++++|+++|++||.|..+.. .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988872 456899999999999999999999999999999874
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5e-12 Score=122.69 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
.++|||+||+.++++.||+.+|..||+|.+|++.....|||||+|++..||+.|+..|+|+.|.|..|.|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 69999999999999999999999999999999988999999999999999999999999999999999999886443
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=4.6e-11 Score=126.42 Aligned_cols=159 Identities=19% Similarity=0.380 Sum_probs=125.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
.-.+|||..+.++.+|+||+..|+.||+|..|. ..+.+|||+||+|.+..+-..|+..||-..+.|.-|+|..+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 357999999999999999999999999999998 456799999999999999999999999999999888875431
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 004788 126 PKDNP--------------------------------------------------------------------------- 130 (730)
Q Consensus 126 pk~~~--------------------------------------------------------------------------- 130 (730)
.....
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 10000
Q ss_pred ---------------------------------CCCc--------------------------------------cCCce
Q 004788 131 ---------------------------------SEKD--------------------------------------VNQGT 139 (730)
Q Consensus 131 ---------------------------------~~~~--------------------------------------~~~~t 139 (730)
.++. ...+.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 0000 00235
Q ss_pred eEEecC--CCcch---HHHHHHHHcccCCeEEEEecCCCcc---------EEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 140 LVVFNL--DASVS---NDDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 140 L~V~NL--p~svT---eedLreiFs~fG~I~~Vritg~skG---------~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
+.++|+ |.+++ +.+|++.+++||.|.+|-+...+.+ ..||+|....++.+|..+|+|+.|+|+++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 777887 55555 4689999999999998865322211 379999999999999999999999999998
Q ss_pred EEec
Q 004788 206 LEPS 209 (730)
Q Consensus 206 V~~A 209 (730)
.+..
T Consensus 529 AE~Y 532 (544)
T KOG0124|consen 529 AEVY 532 (544)
T ss_pred hhhh
Confidence 7654
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=9.4e-12 Score=120.84 Aligned_cols=76 Identities=32% Similarity=0.486 Sum_probs=71.9
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
.++|||+||+..+++.||..+|..||.|..|.+.-...|||||||+|..+|+.|+..|+|+.|.|..|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5689999999999999999999999999999988788899999999999999999999999999999999998643
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=5.1e-11 Score=120.80 Aligned_cols=118 Identities=26% Similarity=0.449 Sum_probs=100.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC-
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI- 125 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~- 125 (730)
.++|||+|||.++++++|+++|.+||.|..+. .+++.+|||||+|.+.++|..|++.+++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997776 357899999999999999999999999999999999999954
Q ss_pred ---CCCCCC----------------CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe
Q 004788 126 ---PKDNPS----------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 169 (730)
Q Consensus 126 ---pk~~~~----------------~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri 169 (730)
++.... ........+++.+++..++..++...|..+|.+..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 222111 01112457999999999999999999999999977654
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=7.7e-11 Score=132.29 Aligned_cols=162 Identities=16% Similarity=0.322 Sum_probs=127.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.....+||++||..+++.+++++.+.||+++... .++.++||||.+|.+......|+..|+|+.+.+++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3468999999999999999999999999987655 35689999999999999999999999999999999999887
Q ss_pred CCCCCCCCCc--------------------cCCceeEEecCC--Cc------ch--HHHHHHHHcccCCeEEEEecC---
Q 004788 125 IPKDNPSEKD--------------------VNQGTLVVFNLD--AS------VS--NDDLRQIFGAYGEVKEIRETP--- 171 (730)
Q Consensus 125 ~pk~~~~~~~--------------------~~~~tL~V~NLp--~s------vT--eedLreiFs~fG~I~~Vritg--- 171 (730)
.......... .....|.+.|+= .+ ++ -|+++..+.+||.|..|.+..
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 5443211111 112233444431 11 11 256778888999999996522
Q ss_pred -----CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 172 -----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 172 -----~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
-..|..||||.+.+++++|.++|+|++++|+.|...|..+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 2357799999999999999999999999999999999764
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=9.5e-11 Score=119.09 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.-.++.+|-|.||+.+++|++|++||.+||.|..|+ .++.+||||||.|.+.++|.+||+.|+|.-+..--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 334789999999999999999999999999999987 588999999999999999999999999999999999999
Q ss_pred ecCCC
Q 004788 123 FSIPK 127 (730)
Q Consensus 123 ~s~pk 127 (730)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.9e-11 Score=111.15 Aligned_cols=76 Identities=26% Similarity=0.456 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
...++||||+||...++||+|.+||+++|+|+.|. .+...-|||||+|...++|+.|++.++++.+..+.|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999987 2455779999999999999999999999999999999987
Q ss_pred c
Q 004788 124 S 124 (730)
Q Consensus 124 s 124 (730)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=103.45 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=75.2
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
..+.|||+|||.++|.|+..++|.+||.|..||+ +...+|.|||.|++..+|.+|++.|+|..+.++.+.|-+..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 3568999999999999999999999999999997 55668999999999999999999999999999999999998877
Q ss_pred hhhh
Q 004788 214 ARRN 217 (730)
Q Consensus 214 ~r~~ 217 (730)
..+.
T Consensus 97 ~~~~ 100 (124)
T KOG0114|consen 97 AFKL 100 (124)
T ss_pred HHHH
Confidence 6554
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=104.03 Aligned_cols=80 Identities=29% Similarity=0.481 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..-++.|||+|||.++|.+++.++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|+|..+.++.|.|.|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345799999999999999999999999999999984 556799999999999999999999999999999999999876
Q ss_pred CC
Q 004788 127 KD 128 (730)
Q Consensus 127 k~ 128 (730)
.+
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 43
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.15 E-value=1.2e-10 Score=113.91 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=103.4
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...||||+||+..++++.|.++|-+.|.|..+++ +...+|||||||.++|+|+-|++.||..++.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3569999999999999999999999999999954 55678999999999999999999999999999999999887
Q ss_pred CCc-----hhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCcccccccc--cCCCCCCccccCCC
Q 004788 211 PGG-----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLH--AFSKSPGLGTLSPI 277 (730)
Q Consensus 211 pk~-----~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~--~~g~S~gfGfvsp~ 277 (730)
... ..+.+++++..++++.-+...++.+|.-.. +| ++|. +++.++|||++...
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~--~P------------~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS--PP------------KIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhcccccc--CC------------cccccccCCCCCCCeEEech
Confidence 222 123468888888888888877766653221 12 2343 37899999998653
No 62
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=4.4e-11 Score=133.19 Aligned_cols=162 Identities=27% Similarity=0.389 Sum_probs=131.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC-
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK- 127 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk- 127 (730)
..+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++..+.|+.|+.......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 5678999999999999999999999999999999988889999999999999999999999999999988873221110
Q ss_pred -----------------CCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHH
Q 004788 128 -----------------DNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 190 (730)
Q Consensus 128 -----------------~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kA 190 (730)
.......-+...+++- |++..+..-++.+++.+|.+.. +.++..+..-|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 0001111123455554 9999988889999999999988 88888778899999999999777
Q ss_pred HHHhCCceeCCceEEEEecCCCc
Q 004788 191 LRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 191 L~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
+..+ |..+.++...+.++.+.+
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred ccCC-ceecCCCCceEEecCCCc
Confidence 7644 778888888888887743
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1e-10 Score=122.96 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=80.2
Q ss_pred cccccCCCcceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHH
Q 004788 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRA 186 (730)
Q Consensus 110 ng~~l~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~ 186 (730)
++-...|..+.+..+.. ++.....++|+|+|||+...+-||+.+|++||+|.+|.| ...+|||+||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 34445555555443221 122233568999999999999999999999999999975 44679999999999999
Q ss_pred HHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 187 AEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 187 A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
|++|.++|||..|.||+|.|.-+..+.
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchhh
Confidence 999999999999999999999987653
No 64
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.14 E-value=9e-10 Score=117.30 Aligned_cols=172 Identities=21% Similarity=0.294 Sum_probs=136.6
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHH--hcccccCCCcc
Q 004788 42 AGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRA--LQNKPLRRRKL 119 (730)
Q Consensus 42 ~ge~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~--Lng~~l~Gr~L 119 (730)
...++....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|++.|+.++.- -+...+.|+.-
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchh
Confidence 4455666778899999999999999999999999999988863 35678899999999999999862 23455678877
Q ss_pred eeeecCCCCCCCCCc---cCCceeE--EecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHh
Q 004788 120 DIHFSIPKDNPSEKD---VNQGTLV--VFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL 194 (730)
Q Consensus 120 ~V~~s~pk~~~~~~~---~~~~tL~--V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~L 194 (730)
-+.|+..+.-....+ ..+..|. |-|--+.+|.+-|..++...|+|..|-+..+..-.|.|||++.+.|++|...|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhc
Confidence 778875443222211 1233344 44555679999999999999999999887676667999999999999999999
Q ss_pred CCceeC--CceEEEEecCCCch
Q 004788 195 NRSDIN--GKRIKLEPSRPGGA 214 (730)
Q Consensus 195 nG~~I~--Gr~IkV~~A~pk~~ 214 (730)
||..|. -+.|+|+|++|..-
T Consensus 180 NGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred ccccccccceeEEEEecCccee
Confidence 999884 38999999999754
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.1e-10 Score=118.70 Aligned_cols=77 Identities=26% Similarity=0.446 Sum_probs=72.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...+|.|.||+.++++++|+++|.+||.|..|. .++.+||||||.|.+.++|++||+.|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456899999999999999999999999998883 588999999999999999999999999999999999999999
Q ss_pred CC
Q 004788 211 PG 212 (730)
Q Consensus 211 pk 212 (730)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=2e-10 Score=119.57 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
.++|||+|||++++|++|+++|+.||+|.+|.+ .+..+|||||+|.+.++|+.|+. |+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999984 33468999999999999999996 9999999999999987643
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=2e-10 Score=119.55 Aligned_cols=74 Identities=20% Similarity=0.404 Sum_probs=67.8
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecC--CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg--~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|||+||++.+++++|+++|+.||+|++|++.. ..++||||+|.+.++|++||. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999998733 357999999999999999995 999999999999999864
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=1.4e-10 Score=96.99 Aligned_cols=66 Identities=23% Similarity=0.539 Sum_probs=58.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 55 LFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 55 LfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
|||+|||+++++++|+++|+.||.|..+.. .+..+++|||+|.+.++|++|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999998873 245689999999999999999999998999999874
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.11 E-value=2.3e-10 Score=95.65 Aligned_cols=66 Identities=32% Similarity=0.616 Sum_probs=58.7
Q ss_pred eEEecCCCcchHHHHHHHHcccCCeEEEEecC----CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 140 LVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 140 L~V~NLp~svTeedLreiFs~fG~I~~Vritg----~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
|+|+|||+++++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999997633 3479999999999999999999999999999985
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=4.3e-10 Score=91.63 Aligned_cols=69 Identities=30% Similarity=0.606 Sum_probs=62.9
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCC---CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~---skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
+|+|+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999874
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=2.3e-10 Score=120.40 Aligned_cols=77 Identities=22% Similarity=0.409 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE---eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~---~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..++|+|.|||...-|-||+.+|++||+|.+|. ...-+|||+||+|++.+||++|-++|+|..+.||+|.|..+..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 458999999999999999999999999998887 35669999999999999999999999999999999999988665
No 72
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=7.7e-10 Score=120.31 Aligned_cols=128 Identities=21% Similarity=0.296 Sum_probs=99.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCcee-CCceEEEEec
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDI-NGKRIKLEPS 209 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I-~Gr~IkV~~A 209 (730)
..+.|||+.||.++.|++|..+|++.|+|-++|+ ++.+||||||.|.+.++|++|++.||+.+| .||.|.|+.+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 3457999999999999999999999999999974 678899999999999999999999999999 6899999988
Q ss_pred CCCchhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCcccccccccCCCCCCccccCC
Q 004788 210 RPGGARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSP 276 (730)
Q Consensus 210 ~pk~~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~~g~S~gfGfvsp 276 (730)
..+. |.++..+.....++++..-..+++-.+.. ..=|.+| .+..+.|||-||--
T Consensus 162 van~--RLFiG~IPK~k~keeIlee~~kVteGVvd-----Vivy~~p------~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 162 VANC--RLFIGNIPKTKKKEEILEEMKKVTEGVVD-----VIVYPSP------DDKTKNRGFAFVEY 215 (506)
T ss_pred eecc--eeEeccCCccccHHHHHHHHHhhCCCeeE-----EEEecCc------cccccccceEEEEe
Confidence 7543 45777777777777766555555422211 0001122 34778999999854
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=6.7e-10 Score=89.46 Aligned_cols=56 Identities=36% Similarity=0.612 Sum_probs=51.6
Q ss_pred HHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 154 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 154 LreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987666799999999999999999999999999999999986
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.06 E-value=3e-09 Score=115.21 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=64.2
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
++|+|+|||.++|++.|++-|.+||.|..+++ .++++ +.|+|.++++|++|+..|+|..++|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 37999999999999999999999999999887 55555 499999999999999999999999999999873
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=3e-10 Score=105.34 Aligned_cols=76 Identities=21% Similarity=0.366 Sum_probs=69.7
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
.+.||||+||...++||+|.++|+++|+|+.|- .+....||+||+|.+.++|+.|++.++|..++.+.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 367999999999999999999999999999983 455678999999999999999999999999999999999875
Q ss_pred C
Q 004788 211 P 211 (730)
Q Consensus 211 p 211 (730)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=5.5e-10 Score=122.14 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=68.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecC-CCccEEEEEEcCH--HHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg-~skG~AFVeF~d~--e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
...+|||+||++++++++|+.+|..||.|..|.+.. ..||||||+|.+. .++.+||..|||.++.|+.|+|..|++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 356899999999999999999999999999986521 2289999999987 7899999999999999999999999875
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.04 E-value=7.4e-10 Score=90.20 Aligned_cols=69 Identities=30% Similarity=0.566 Sum_probs=62.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCEEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 54 tLfV~NLP~~vteedL~~lF~~fG~I~~V~~~---~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
+|||+|||.++++++|+++|++||+|..+... +..+|+|||+|.+.++|++|++.+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988732 3457999999999999999999999999999988763
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.01 E-value=3.3e-10 Score=112.64 Aligned_cols=76 Identities=36% Similarity=0.569 Sum_probs=70.4
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..+|.|.||-+.++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..++|+.|+|.+|+=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999854 778899999999999999999999999999999999998864
Q ss_pred C
Q 004788 212 G 212 (730)
Q Consensus 212 k 212 (730)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 79
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.01 E-value=3.3e-10 Score=117.49 Aligned_cols=98 Identities=26% Similarity=0.401 Sum_probs=88.4
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC--chhh
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG--GARR 216 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk--~~r~ 216 (730)
+|||+|||..+++.+|+.+|++||+|.+|++. |.||||..+|...|+.||+.|+|.+|.|..|.|+-++.| ...+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 69999999999999999999999999999986 679999999999999999999999999999999998877 4556
Q ss_pred hhhhhchhhhhHHHHHhhhhccC
Q 004788 217 NLMQQLNQELEQDEARGFRHQVG 239 (730)
Q Consensus 217 ~~~~ql~~~~~q~~~~~~~~~~G 239 (730)
-.+.++....+.++++..+.++|
T Consensus 81 l~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred cccCCCCccccCHHHhhhhcccC
Confidence 67888888888888887766665
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.00 E-value=4.9e-10 Score=111.39 Aligned_cols=80 Identities=28% Similarity=0.487 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+.+.....+|.|-||.+.++.++|+.+|++||.|-+|+ .+..++|||||.|.+..+|+.|+++|+|..|.|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44555679999999999999999999999999999998 4778999999999999999999999999999999999
Q ss_pred eeecC
Q 004788 121 IHFSI 125 (730)
Q Consensus 121 V~~s~ 125 (730)
|+++.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98874
No 81
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=5.2e-10 Score=109.48 Aligned_cols=78 Identities=31% Similarity=0.510 Sum_probs=70.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEec--CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit--g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
+.++|||+|||.++.+.+|+++|-+||.|.+|.+. .....||||+|++..+|+.||..-+|..++|++|+|+|++.+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 46789999999999999999999999999999753 3445799999999999999999999999999999999998654
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.7e-09 Score=112.67 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=78.6
Q ss_pred CCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCcee
Q 004788 125 IPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDI 199 (730)
Q Consensus 125 ~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I 199 (730)
.|...+....-.-+||||.-|+++++|.+|+..|+.||.|+.|+ ++++++|||||+|+++.+...|.+..+|.+|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 44444444445678999999999999999999999999999985 5889999999999999999999999999999
Q ss_pred CCceEEEEecCCCch
Q 004788 200 NGKRIKLEPSRPGGA 214 (730)
Q Consensus 200 ~Gr~IkV~~A~pk~~ 214 (730)
+|+.|.|.+-+-...
T Consensus 169 dgrri~VDvERgRTv 183 (335)
T KOG0113|consen 169 DGRRILVDVERGRTV 183 (335)
T ss_pred cCcEEEEEecccccc
Confidence 999999999775543
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.5e-09 Score=113.03 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...|-+||||.-|+.+++|.+|+..|+.||+|+.|. ++++++|||||+|++..+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 346789999999999999999999999999999886 689999999999999999999999999999999999998
Q ss_pred ecC
Q 004788 123 FSI 125 (730)
Q Consensus 123 ~s~ 125 (730)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=3.4e-09 Score=86.76 Aligned_cols=70 Identities=37% Similarity=0.635 Sum_probs=63.9
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCC----CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~----skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999876433 378999999999999999999999999999999874
No 85
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=113.52 Aligned_cols=162 Identities=13% Similarity=0.220 Sum_probs=117.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc-----CC--EEEEE-eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQY-----GD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~f-----G~--I~~V~-~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
..--.|-+++||+++++.|+.++|.+- |. |.-|. .+++..|-|||.|..+++|+.|+.+ +...+..|-|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 345678889999999999999999622 22 33343 4788899999999999999999984 444444443333
Q ss_pred eecC-----------------C-----C-----CCCCCCccCCceeEEecCCCcchHHHHHHHHcccCC-eEE--EE---
Q 004788 122 HFSI-----------------P-----K-----DNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKE--IR--- 168 (730)
Q Consensus 122 ~~s~-----------------p-----k-----~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~-I~~--Vr--- 168 (730)
-.+. + - ...........+|.+++||+..+.++|.++|..|-. |+. |.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 1110 0 0 000111122568999999999999999999999863 222 32
Q ss_pred -ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 169 -ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 169 -itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
-.++..|-|||+|.+.|+|..|....+++....|-|.|-.+.-.
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 25677899999999999999999999988888999988776543
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=98.93 E-value=2.3e-09 Score=117.39 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=85.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-CCCcccEEEEEEcCH--HHHHHHHHHhcccccCCCcceeeecCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-~~ksrG~AFV~F~d~--e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
....+|||+||++++++++|+.+|..||.|..|.+ ..+.||||||+|.+. .++.+||..|+|..+.|+.|+|..+++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34689999999999999999999999999999873 223499999999987 789999999999999999999988765
Q ss_pred CCCC-------CCCccCCceeEEecCCCc-chHHHHHHHHcccCCeEEEEe
Q 004788 127 KDNP-------SEKDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRE 169 (730)
Q Consensus 127 k~~~-------~~~~~~~~tL~V~NLp~s-vTeedLreiFs~fG~I~~Vri 169 (730)
.-.. ........++. ++.. .....|+-+|-+.++|+.+-+
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEecccccccccccc
Confidence 4100 00000111111 1221 334567777777777776643
No 87
>smart00360 RRM RNA recognition motif.
Probab=98.93 E-value=2.9e-09 Score=86.24 Aligned_cols=66 Identities=32% Similarity=0.623 Sum_probs=59.5
Q ss_pred EecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 142 VFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 142 V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
|+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999998653 3447899999999999999999999999999999874
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.93 E-value=2.9e-09 Score=109.51 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~--~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
...+|||+||++.+|+++|+++|+.||+|.+|. ..++.+++|||+|++.++|+.|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 358999999999999999999999999999998 355677899999999999999996 99999999999997653
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=4.1e-09 Score=86.25 Aligned_cols=70 Identities=34% Similarity=0.638 Sum_probs=63.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCC----CcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 54 tLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~----ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
+|+|+|||..+++++|+++|+.||.|..+.... ..+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999887432 3489999999999999999999999999999998864
No 90
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=3.4e-09 Score=85.87 Aligned_cols=66 Identities=32% Similarity=0.570 Sum_probs=59.4
Q ss_pred EcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 57 VRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 57 V~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
|+|||..+++++|+++|++||.|..+.. .++.+|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988873 34568999999999999999999999999999988763
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=4.3e-09 Score=108.26 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=66.6
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..+|+|+||++.+|+++|+++|+.||+|.+|++ .+..+++|||+|.++++|+.|+. |+|..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 358999999999999999999999999999976 34456899999999999999995 999999999999987653
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=9.1e-10 Score=110.25 Aligned_cols=79 Identities=25% Similarity=0.505 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..|||||++|..+|+|.-|...|-+||+|..|. .+.++|||+||+|...|+|..||..|++..|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 469999999999999999999999999999997 477899999999999999999999999999999999999998
Q ss_pred CCCC
Q 004788 126 PKDN 129 (730)
Q Consensus 126 pk~~ 129 (730)
|...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 8653
No 93
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.5e-09 Score=110.07 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=68.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....+|||++|++.+..|+|++.|++||+|.+.. .++++|||+||+|.|.++|.+|++. -.-.|+||+..|.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3456899999999999999999999999999873 4788999999999999999999984 345889999999988
Q ss_pred CCCc
Q 004788 210 RPGG 213 (730)
Q Consensus 210 ~pk~ 213 (730)
.-++
T Consensus 89 ~lg~ 92 (247)
T KOG0149|consen 89 SLGG 92 (247)
T ss_pred hhcC
Confidence 6544
No 94
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=2.9e-09 Score=108.03 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.+..-++|||++|+.++.+++|++.|++||+|.+.. .++++|||+||+|+|.++|.+|++. -+-.|+||+-.+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344468999999999999999999999999998765 4789999999999999999999984 3355788888777
Q ss_pred ecC
Q 004788 123 FSI 125 (730)
Q Consensus 123 ~s~ 125 (730)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 654
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.9e-08 Score=110.30 Aligned_cols=142 Identities=18% Similarity=0.290 Sum_probs=107.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-------CCCccc---EEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-------ACKHRG---FVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-------~~ksrG---~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
..-+++|||++||.+++|++|...|..||.+..-+. ....+| |+|+-|+++..++.-+.+... ...+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 345899999999999999999999999998765441 122566 999999999999987765432 3333
Q ss_pred ceeeecCCCCCC-------------------CCCccCCceeEEecCCCcchHHHHHHHHc-ccCCeEEEEecC-----CC
Q 004788 119 LDIHFSIPKDNP-------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFG-AYGEVKEIRETP-----HK 173 (730)
Q Consensus 119 L~V~~s~pk~~~-------------------~~~~~~~~tL~V~NLp~svTeedLreiFs-~fG~I~~Vritg-----~s 173 (730)
+.++.+.+.... ...-...+||||++||.-++.++|..+|+ .||.|..+-|+- -.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 333333222111 11112367999999999999999999999 799999985532 35
Q ss_pred ccEEEEEEcCHHHHHHHHHH
Q 004788 174 RHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 174 kG~AFVeF~d~e~A~kAL~~ 193 (730)
+|-|-|.|.+..+-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 78899999999999999984
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=4.2e-09 Score=84.83 Aligned_cols=56 Identities=23% Similarity=0.594 Sum_probs=50.6
Q ss_pred HHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 69 LRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 69 L~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
|+++|++||+|..+....+.+++|||+|.+.++|++|++.|+|..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999865555799999999999999999999999999999999985
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.88 E-value=5.1e-08 Score=104.21 Aligned_cols=166 Identities=25% Similarity=0.287 Sum_probs=132.6
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 47 YGEHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~-vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
.+..+.+.++|-+|... ++-+.|.++|..||.|+.|+..+...|.|+|++.|..+.++|+..|++..+.|.+|.|.+++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 34556899999999854 78899999999999999999666778999999999999999999999999999999998774
Q ss_pred CCC------------CCC---------------------CCccCCceeEEecCCCcchHHHHHHHHcccCC-eEEEEecC
Q 004788 126 PKD------------NPS---------------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRETP 171 (730)
Q Consensus 126 pk~------------~~~---------------------~~~~~~~tL~V~NLp~svTeedLreiFs~fG~-I~~Vritg 171 (730)
... .++ ......++|...|.|..+||+.|.++|..-+. -.+|++.+
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 321 000 01123568999999999999999999997653 23444432
Q ss_pred ---CCccEEEEEEcCHHHHHHHHHHhCCceeCC------ceEEEEecCCC
Q 004788 172 ---HKRHHKFIEFYDVRAAEAALRALNRSDING------KRIKLEPSRPG 212 (730)
Q Consensus 172 ---~skG~AFVeF~d~e~A~kAL~~LnG~~I~G------r~IkV~~A~pk 212 (730)
.+..-+.+||++.++|..||..+|...|.+ -.|++.|+.++
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 223458999999999999999999998876 36777777654
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.7e-09 Score=108.41 Aligned_cols=81 Identities=27% Similarity=0.492 Sum_probs=74.5
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||++|..++++.-|...|-+||+|++|.+ +.+.|||+||+|.-.|+|.+||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3569999999999999999999999999999964 56779999999999999999999999999999999999999
Q ss_pred CCchhh
Q 004788 211 PGGARR 216 (730)
Q Consensus 211 pk~~r~ 216 (730)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976544
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.86 E-value=8.4e-09 Score=104.59 Aligned_cols=75 Identities=35% Similarity=0.624 Sum_probs=70.0
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..+|||+||+.++++++|+++|.+||.|..+++ ++..+|+|||+|.+.++|..|++.+++..|.|+.|+|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999987753 567899999999999999999999999999999999999765
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=9e-09 Score=96.38 Aligned_cols=79 Identities=24% Similarity=0.419 Sum_probs=71.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...-.|||.++...+++++|.+.|..||+|+.|.+ ++-.+|||+|+|++.++|++|+.+|||..+-|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34558999999999999999999999999999954 6667899999999999999999999999999999999998
Q ss_pred CCCc
Q 004788 210 RPGG 213 (730)
Q Consensus 210 ~pk~ 213 (730)
-.++
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 5433
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=8.3e-10 Score=107.92 Aligned_cols=77 Identities=19% Similarity=0.400 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.++.-|||+|||++.||.||...|++||+|..|. .+++++||||+.|+|.++..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4689999999999999999999999999999886 58999999999999999999999999999999999999866
Q ss_pred CC
Q 004788 125 IP 126 (730)
Q Consensus 125 ~p 126 (730)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.77 E-value=1.5e-08 Score=113.44 Aligned_cols=80 Identities=29% Similarity=0.433 Sum_probs=74.0
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
..+||+|+|+++++++|.++|+..|.|..++ .+++.+|||||+|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 6899999999999999999999999999986 47888999999999999999999999999999999999999876
Q ss_pred chhhh
Q 004788 213 GARRN 217 (730)
Q Consensus 213 ~~r~~ 217 (730)
..+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65543
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.76 E-value=1.1e-08 Score=114.43 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
+.|||+|||++++|++|.++|+..|.|.+++ .+++.+||+|++|.+.++|..|++.|+|..+.|++|+|.|....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 9999999999999999999999999999887 58899999999999999999999999999999999999998654
Q ss_pred C
Q 004788 128 D 128 (730)
Q Consensus 128 ~ 128 (730)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 104
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=5.2e-09 Score=121.75 Aligned_cols=161 Identities=20% Similarity=0.338 Sum_probs=138.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~----~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
....++|||++||+..+++.+|+..|..+|.|..|.+. +....|+||.|.+...+-.|..++.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34568999999999999999999999999999998843 23445999999999999999999999988777777777
Q ss_pred cCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCC--
Q 004788 124 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-- 201 (730)
Q Consensus 124 s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G-- 201 (730)
..++ ....+.+++++|...+....|...|..||.|..|.+. +...|++|.|++...|+.|++.|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 6552 2345679999999999999999999999999999875 445799999999999999999999999987
Q ss_pred ceEEEEecCCCchh
Q 004788 202 KRIKLEPSRPGGAR 215 (730)
Q Consensus 202 r~IkV~~A~pk~~r 215 (730)
+.++|.|+.+-+..
T Consensus 521 ~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 521 RRLRVDLASPPGAT 534 (975)
T ss_pred cccccccccCCCCC
Confidence 78999999876543
No 105
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=94.94 Aligned_cols=78 Identities=18% Similarity=0.471 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..-.|||.++.+.++|++|.+.|..||+|+.|. .++-.+|||+|+|.+.++|++|+.++||..|.|.+|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 356899999999999999999999999999987 466789999999999999999999999999999999999986
Q ss_pred CCC
Q 004788 126 PKD 128 (730)
Q Consensus 126 pk~ 128 (730)
-+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 106
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=2.2e-09 Score=105.05 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=69.5
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
.+.-|||+|||+++||.||.-+|++||+|..|. .+++++||||+.|+|.++..-|+..|||..|.||.|+|..-.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 456799999999999999999999999999984 388999999999999999999999999999999999997643
No 107
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=9.8e-09 Score=110.38 Aligned_cols=126 Identities=18% Similarity=0.335 Sum_probs=100.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||++|+++++++.|++.|.+||+|.++.+ ++++++|+||+|.+.+...+++. ..-+.|+|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 4678999999999999999999999999999843 67889999999999999988886 45678999999999988
Q ss_pred CCchhh----------hhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 211 PGGARR----------NLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 211 pk~~r~----------~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
++.... -++..++..+..++++.++ .++|...+.-+|.+ +.+++|||||..-
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf---------------e~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF---------------EQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhh---------------hccceeEeeEEeecccccccccceeeEec
Confidence 876432 3445566777777777664 44554555555655 8999999999764
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.70 E-value=2.8e-08 Score=114.14 Aligned_cols=76 Identities=30% Similarity=0.537 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
+|||||++|+.+++|.||.++|+.||+|.+|... ..+|||||.+....+|.+|+.+|.+..+.++.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 7999999999999999999999999999999854 589999999999999999999999999999999999997544
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.69 E-value=3.6e-08 Score=99.86 Aligned_cols=77 Identities=32% Similarity=0.621 Sum_probs=71.4
Q ss_pred CceeEEecCCCcchHHHHHH----HHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 137 QGTLVVFNLDASVSNDDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLre----iFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
.+||||.||+..+..++|+. +|++||+|.+|.. +++.+|.|||.|.+.+.|..|++.|+|..+.|+.++|.||+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34999999999999999988 9999999999964 67789999999999999999999999999999999999998
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
.+.
T Consensus 89 s~s 91 (221)
T KOG4206|consen 89 SDS 91 (221)
T ss_pred Ccc
Confidence 764
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=98.67 E-value=6.1e-08 Score=81.96 Aligned_cols=57 Identities=32% Similarity=0.515 Sum_probs=50.2
Q ss_pred HHHHHHHHc----ccCCeEEEE---e---c--CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 151 NDDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 151 eedLreiFs----~fG~I~~Vr---i---t--g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
+++|+++|+ +||.|..|. + + +.++|+|||+|.+.++|.+|++.|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999998873 2 2 6679999999999999999999999999999999873
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5.2e-08 Score=109.80 Aligned_cols=166 Identities=20% Similarity=0.343 Sum_probs=133.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcc-----------CC-EEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQY-----------GD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 116 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~f-----------G~-I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G 116 (730)
....+.++|+++|+.++++.+..+|..- |+ +..++. +..+.+|||+|.+.++|..|+. +++..+.|
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 3457899999999999999999999853 32 566654 4678999999999999999987 88888888
Q ss_pred CcceeeecCCCCC-------------------CCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCC
Q 004788 117 RKLDIHFSIPKDN-------------------PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPH 172 (730)
Q Consensus 117 r~L~V~~s~pk~~-------------------~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~ 172 (730)
+.+.+.-...... ..........++|++||..+++++++++...||.++..+. ++.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 8877643211100 0011122458999999999999999999999999887642 567
Q ss_pred CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchhh
Q 004788 173 KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 216 (730)
Q Consensus 173 skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r~ 216 (730)
+++|||.+|.+......|+..|||..+++++|.|..+..+....
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 89999999999999999999999999999999999998776544
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=1.1e-07 Score=101.34 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHh-cccccCCCcc
Q 004788 41 VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 119 (730)
Q Consensus 41 ~~ge~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~L-ng~~l~Gr~L 119 (730)
+.-..+..+...++|||++|...++|.+|+++|.+||+|+++... ..+++|||+|.+.++|+.|..+. +...|.|++|
T Consensus 217 ~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 217 AGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred ccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 333556667778999999999999999999999999999999854 45679999999999999988765 5566799999
Q ss_pred eeeecCCC
Q 004788 120 DIHFSIPK 127 (730)
Q Consensus 120 ~V~~s~pk 127 (730)
.|.|..++
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999883
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.55 E-value=1.5e-07 Score=108.40 Aligned_cols=79 Identities=28% Similarity=0.394 Sum_probs=74.6
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchhh
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 216 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r~ 216 (730)
++||||+.|+..+++.||..+|+.||+|.+|.+. ..+++|||.+....+|.+|+.+|+...+.++.|+|.|+..++.+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 6799999999999999999999999999999886 457999999999999999999999999999999999999888776
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.52 E-value=1.8e-07 Score=79.08 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=49.9
Q ss_pred HHHHHHHhh----ccCCEEEEE---e---C--CCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 66 DLELRSLFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 66 eedL~~lF~----~fG~I~~V~---~---~--~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
+++|+++|+ +||.|.+|. . + +.++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999998873 2 2 678999999999999999999999999999999876
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=3.3e-08 Score=99.31 Aligned_cols=135 Identities=20% Similarity=0.298 Sum_probs=107.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..+||||.|+-..|+|+-|.++|-+.|+|..|.+ ..+.+ ||||.|.++-.+.-|++.+||..+.++.+.|.+..-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 4699999999999999999999999999999873 33344 999999999999999999999999999988865321
Q ss_pred CCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCcee
Q 004788 127 KDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDI 199 (730)
Q Consensus 127 k~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I 199 (730)
... .- |+..++++.+...|+.-|.+..+++ +++.+.++|+.+.-..+.-.++....+...
T Consensus 87 ~sh--------ap-----ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 87 NSH--------AP-----LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred CCc--------ch-----hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 110 00 5667899999999999999988865 345677889888777777777765554443
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=2.7e-07 Score=98.25 Aligned_cols=79 Identities=35% Similarity=0.516 Sum_probs=69.9
Q ss_pred CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHh-CCceeCCceEEEEecC
Q 004788 132 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSR 210 (730)
Q Consensus 132 ~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~L-nG~~I~Gr~IkV~~A~ 210 (730)
.++....+|||++|...+++.+|+++|.+||+|+.|++... +++|||+|.+.++|++|.++. +...|+|++|+|.|++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34455679999999999999999999999999999998654 469999999999999998765 6668899999999999
Q ss_pred C
Q 004788 211 P 211 (730)
Q Consensus 211 p 211 (730)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 117
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=3.1e-07 Score=94.61 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.|+|||-.||.+..+.||...|-.||.|.+.+ .++.+|.|+||.|.++.+|+.||.+|||..|.=++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 34679999999999999999999999999998876 4778999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004788 124 SIPKDN 129 (730)
Q Consensus 124 s~pk~~ 129 (730)
..||+.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2e-07 Score=99.16 Aligned_cols=78 Identities=21% Similarity=0.402 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..|...|||..|.+-+++++|.-+|+.||.|.+|. .++.+..||||+|.+.+++++|.-.|++..|.++.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35789999999999999999999999999999886 4677888999999999999999999999999999999999
Q ss_pred cCC
Q 004788 124 SIP 126 (730)
Q Consensus 124 s~p 126 (730)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=8.2e-08 Score=111.66 Aligned_cols=140 Identities=13% Similarity=0.216 Sum_probs=120.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..++||+||+..+.+++|...|..+|.+..+. ..++.+|+|||.|...+++.+|+.-..++.+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h----------
Confidence 46899999999999999999999999887765 4677899999999999999999984443333 2
Q ss_pred CCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 004788 127 KDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 202 (730)
Q Consensus 127 k~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr 202 (730)
...|+|+|.|...|.++|+.++..+|.+++++. .++.+|.|+|.|.+..+|.+++..+++..+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 236999999999999999999999999999854 567789999999999999999998888888888
Q ss_pred eEEEEecCCC
Q 004788 203 RIKLEPSRPG 212 (730)
Q Consensus 203 ~IkV~~A~pk 212 (730)
.+.|..+.|.
T Consensus 806 ~~~v~vsnp~ 815 (881)
T KOG0128|consen 806 NGEVQVSNPE 815 (881)
T ss_pred CccccccCCc
Confidence 8888887663
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.31 E-value=8.8e-07 Score=94.80 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=128.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..+++|++++..++.+.++..++..+|.+.... ....++|+++|.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 478999999999999999999999999765544 355689999999999999999999544445555555443332
Q ss_pred CCCC-----C-CCCccCCceeE-EecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHH
Q 004788 126 PKDN-----P-SEKDVNQGTLV-VFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 126 pk~~-----~-~~~~~~~~tL~-V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
.... . ........+++ |.+++..+++++|+..|..+|.|..+++ ++..+++|+|+|.+...+..|+..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 2211 0 01111234555 9999999999999999999999999975 456689999999999999999987
Q ss_pred hCCceeCCceEEEEecCCCch
Q 004788 194 LNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 194 LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
....+.++.+.+++..+...
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred -ccCcccCcccccccCCCCcc
Confidence 88899999999999987643
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.26 E-value=2.6e-06 Score=85.49 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=73.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcc-CCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 44 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 44 e~~~~e~psrtLfV~NLP~~vteedL~~lF~~f-G~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
+..........+||..+|.-+.+.++..+|.++ |.|+.++ .+|.++|||||+|++.+.|+-|-+.||+..|.++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 334445567889999999999999999999999 6676665 5888999999999999999999999999999999
Q ss_pred cceeeecCCC
Q 004788 118 KLDIHFSIPK 127 (730)
Q Consensus 118 ~L~V~~s~pk 127 (730)
.|.+++-.|.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999987654
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.20 E-value=1.2e-06 Score=90.17 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=117.9
Q ss_pred EEEEcCCCCCCcHHH-H--HHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 54 TLFVRNINSNVEDLE-L--RSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 54 tLfV~NLP~~vteed-L--~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..++.++-..+..+- | ...|+.|-.+...+ ..+.-++++|+.|.....-.++-..-+++.+.-+.+++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 456666666666555 3 56666665443332 3556788999999998888888877777777766666544333
Q ss_pred CCCC--CCCccCCceeEEecCCCcchHHHHHHHHcccCCeE---EE--EecCCCccEEEEEEcCHHHHHHHHHHhCCcee
Q 004788 127 KDNP--SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK---EI--RETPHKRHHKFIEFYDVRAAEAALRALNRSDI 199 (730)
Q Consensus 127 k~~~--~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~---~V--ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I 199 (730)
..++ .+.+.+.-+||++.|..+++++-|-..|.+|-... .| +-+++++||+||.|.+..++.+|+++|+|+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 3332 23344566899999999999999999999985322 22 34789999999999999999999999999999
Q ss_pred CCceEEEEecCCCc
Q 004788 200 NGKRIKLEPSRPGG 213 (730)
Q Consensus 200 ~Gr~IkV~~A~pk~ 213 (730)
+.+.|++..+.-+.
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999987665443
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2e-06 Score=91.68 Aligned_cols=77 Identities=25% Similarity=0.406 Sum_probs=70.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
.+.+.|||--|.+-+++++|.-||+.||.|..|.+ ++.+-.||||+|++.+++++|.-+|++..|+.++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34678999999999999999999999999998854 6667789999999999999999999999999999999998
Q ss_pred CC
Q 004788 210 RP 211 (730)
Q Consensus 210 ~p 211 (730)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 65
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.20 E-value=4e-06 Score=84.15 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=72.2
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHccc-CCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~f-G~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
....+.++|..+|..+.+.++..+|.+| |.|..++. ||+++|||||+|++.+.|+-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446789999999999999999999998 77887765 88999999999999999999999999999999999999
Q ss_pred ecCCC
Q 004788 208 PSRPG 212 (730)
Q Consensus 208 ~A~pk 212 (730)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 99887
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.19 E-value=1.2e-06 Score=87.66 Aligned_cols=92 Identities=21% Similarity=0.358 Sum_probs=60.8
Q ss_pred CCcceeEEeecCCCCCCHHHHHHHHHhcCCCceeEEEec--ccc--cccceeEEEEEeccChHHHHHHHHHHcCCcccCC
Q 004788 567 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP--IDF--KNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 642 (730)
Q Consensus 567 ~d~rTTvMirNIPnk~~~~~l~~~id~~~~g~yDf~Ylp--~df--~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~ 642 (730)
+..++.|.||+||+.+|.+.+++.|+......++|-|+. .+. -..+-...|||||.+.+++..|.+.|+|+.|..-
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 356789999999999999999998887666665555655 222 1334567899999999999999999999999865
Q ss_pred CC-ccEEEEEeeeccch
Q 004788 643 NS-EKVASLAYARIQGQ 658 (730)
Q Consensus 643 ~s-~K~~~v~yA~iQG~ 658 (730)
.. .-++.|.||-.|-.
T Consensus 84 kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp TS-EEEEEEEE-SS---
T ss_pred CCCCcceeEEEcchhcc
Confidence 43 48999999988643
No 126
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.09 E-value=8.9e-06 Score=90.36 Aligned_cols=154 Identities=12% Similarity=0.198 Sum_probs=104.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE-E----EeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-L----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~-V----~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.....|-+++||..+|++||.++|+..--|.. | ...++..|-|||+|++.+.|++|+.. +...|.-|-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35689999999999999999999996643333 1 13556788999999999999999973 444444333333111
Q ss_pred -----------------------------------CCCC------C------------------C--------CCCc---
Q 004788 125 -----------------------------------IPKD------N------------------P--------SEKD--- 134 (730)
Q Consensus 125 -----------------------------------~pk~------~------------------~--------~~~~--- 134 (730)
..+. . . ..++
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 0000 0 0 0000
Q ss_pred -c-----------------CC-ceeEEecCCCcchHHHHHHHHcccCCe---EEEEecCCCccEEEEEEcCHHHHHHHHH
Q 004788 135 -V-----------------NQ-GTLVVFNLDASVSNDDLRQIFGAYGEV---KEIRETPHKRHHKFIEFYDVRAAEAALR 192 (730)
Q Consensus 135 -~-----------------~~-~tL~V~NLp~svTeedLreiFs~fG~I---~~Vritg~skG~AFVeF~d~e~A~kAL~ 192 (730)
. .. ..+..++||.+.++.+|..+|+..-.+ .+|..+++..|-|+|+|.+.++|..|+.
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 01 257788999999999999999975433 2233467778899999999999999986
Q ss_pred HhCCceeCCceEE
Q 004788 193 ALNRSDINGKRIK 205 (730)
Q Consensus 193 ~LnG~~I~Gr~Ik 205 (730)
+ ++..+..+-|.
T Consensus 340 k-d~anm~hrYVE 351 (510)
T KOG4211|consen 340 K-DGANMGHRYVE 351 (510)
T ss_pred c-CCcccCcceee
Confidence 3 55555554443
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.01 E-value=5.3e-07 Score=97.77 Aligned_cols=152 Identities=17% Similarity=0.311 Sum_probs=122.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccc-ccCCCcceeeecCCCCCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDNPS 131 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~-~l~Gr~L~V~~s~pk~~~~ 131 (730)
..||++||.+.++..+|+.+|... .|-.-...-...||+||.+.+...|.+|++.++|+ .+.|+++.|.++.++...
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr- 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR- 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH-
Confidence 468999999999999999999754 11100011125689999999999999999999985 588999999988776543
Q ss_pred CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCC--CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 132 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 132 ~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~--skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
.+.+-|+|+|+...++-|..+...||.|+.|..... ..-..-|+|...+.+..|+..|+|..+....++|.|-
T Consensus 80 -----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 -----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred -----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 446999999999999999999999999998854222 1223457889999999999999999999999999986
Q ss_pred CC
Q 004788 210 RP 211 (730)
Q Consensus 210 ~p 211 (730)
-.
T Consensus 155 Pd 156 (584)
T KOG2193|consen 155 PD 156 (584)
T ss_pred ch
Confidence 43
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.99 E-value=1.5e-05 Score=83.02 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+.-..+|+|.|||..|+++||+++|+.||.++.+. ..+.+.|.|-|.|...++|..|++.+++..+.|+.|.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34458999999999999999999999999887765 57788999999999999999999999999999999988765
Q ss_pred CC
Q 004788 125 IP 126 (730)
Q Consensus 125 ~p 126 (730)
.+
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 129
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.98 E-value=1.4e-05 Score=91.73 Aligned_cols=83 Identities=17% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--------CCCcccEEEEEEcCHHHHHHHHHHhcccccC
Q 004788 44 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLR 115 (730)
Q Consensus 44 e~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~ 115 (730)
..-.++..++.|||+||++.++++.|...|..||+|.+|++ ..+.+.|+||-|.+..+|++|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 33344556899999999999999999999999999998872 3346779999999999999999999999999
Q ss_pred CCcceeeecCC
Q 004788 116 RRKLDIHFSIP 126 (730)
Q Consensus 116 Gr~L~V~~s~p 126 (730)
+.++++.|.++
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 99999999843
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.96 E-value=2.1e-05 Score=88.11 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE--e---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--T---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~--~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
-.|.|||.+|...+-..+|+++|++||+|.-.+ + +.-.+.|+||++.+.++|.+||..|+.+.|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 468999999999999999999999999998665 2 22357799999999999999999999999999999998764
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.95 E-value=1.3e-05 Score=89.83 Aligned_cols=74 Identities=24% Similarity=0.473 Sum_probs=67.3
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
+.|+|.+|...+-..+|+.+|++||+|.-.++ ++..+.|+||++.+.++|.+||..|+.+++.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 47999999999999999999999999987754 445578999999999999999999999999999999998864
No 132
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=7.1e-06 Score=83.91 Aligned_cols=71 Identities=24% Similarity=0.452 Sum_probs=66.1
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
.+||++|++.+.+.+|..+|..||.|.++.+. .+|+||+|.|..+|..|+..||+++|.|.++.|++++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 58999999999999999999999999999874 589999999999999999999999999988999998853
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.91 E-value=3.4e-05 Score=78.21 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=66.9
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEE--EecCCC----ccEEEEEEcCHHHHHHHHHHhCCceeC---CceEEEE
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALRALNRSDIN---GKRIKLE 207 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~V--ritg~s----kG~AFVeF~d~e~A~kAL~~LnG~~I~---Gr~IkV~ 207 (730)
-+||||.+||.++...||..+|..|---+.. +.+.+. +-+|||.|.+.++|.+|+.+|||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5799999999999999999999998544443 444443 368999999999999999999999985 7899999
Q ss_pred ecCCCchhh
Q 004788 208 PSRPGGARR 216 (730)
Q Consensus 208 ~A~pk~~r~ 216 (730)
+++....++
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 998765443
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.90 E-value=0.00012 Score=79.27 Aligned_cols=153 Identities=17% Similarity=0.222 Sum_probs=109.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc-----CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~f-----G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+++..|-.++||+..++.+|..+|+-. |.+......++..|.+.|.|.|.|.-+.|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 345677788999999999999999843 3333444567788999999999999999998 4666677787777544
Q ss_pred CCCCCC------------CCCccCCceeEEecCCCcchHHHHHHHHccc-----C--CeEEEEe-cCCCccEEEEEEcCH
Q 004788 125 IPKDNP------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAY-----G--EVKEIRE-TPHKRHHKFIEFYDV 184 (730)
Q Consensus 125 ~pk~~~------------~~~~~~~~tL~V~NLp~svTeedLreiFs~f-----G--~I~~Vri-tg~skG~AFVeF~d~ 184 (730)
...+-. -....+.-.|..++||+++++.|+.++|..- | .|..|+. +++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 332110 0111234468889999999999999999732 2 2333433 677889999999999
Q ss_pred HHHHHHHHHhCCceeCCceE
Q 004788 185 RAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 185 e~A~kAL~~LnG~~I~Gr~I 204 (730)
++|+.||.+ |...|+-|-|
T Consensus 217 e~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHH
Confidence 999999984 4444443433
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.83 E-value=2.4e-05 Score=87.49 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=65.8
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
.+|||+|||.+++.++|+++|..||.|+..++. ++...||||+|++.++++.||++ +-..|++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 369999999999999999999999999987542 23338999999999999999985 577899999999998875
Q ss_pred chh
Q 004788 213 GAR 215 (730)
Q Consensus 213 ~~r 215 (730)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 433
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.83 E-value=4.2e-05 Score=79.80 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
...+|+|.|||+.++++||+++|.+||.++.+-+ .+.+.|.|-|.|...++|.+|++.++|..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998887743 567789999999999999999999999999999999988765
Q ss_pred Cc
Q 004788 212 GG 213 (730)
Q Consensus 212 k~ 213 (730)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.82 E-value=2.6e-05 Score=87.19 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=63.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
....+|||+|||.++++++|+++|..||+|+...+ .++...||||+|.+.++++.|+.+ +-..+.+++|.|+-.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 34567999999999999999999999999987652 244448999999999999999995 477788999999754
Q ss_pred C
Q 004788 125 I 125 (730)
Q Consensus 125 ~ 125 (730)
.
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 3
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.79 E-value=7.7e-06 Score=88.39 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=117.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--------CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
..|.|.||.+.++.++++.||...|+|..+.. .......|||.|.|...+..|.. |.++.+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999988762 22356689999999999998876 8888887777666433
Q ss_pred CCCCCC-----------------------------C-C-Cc---------------------cCCceeEEecCCCcchHH
Q 004788 125 IPKDNP-----------------------------S-E-KD---------------------VNQGTLVVFNLDASVSND 152 (730)
Q Consensus 125 ~pk~~~-----------------------------~-~-~~---------------------~~~~tL~V~NLp~svTee 152 (730)
.....+ . . .. .-.++++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 111000 0 0 00 002479999999999999
Q ss_pred HHHHHHcccCCeEEEEe-cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 153 DLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 153 dLreiFs~fG~I~~Vri-tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
++.+.|..+|+|...+. .+....+|-|+|........|++ ++|.++.-....+...+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 99999999999998865 33345678899999999999987 677777644444444444
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.76 E-value=0.0001 Score=66.67 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=58.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcc--CCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccC----CCccee
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 121 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~f--G~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~----Gr~L~V 121 (730)
+||.|+|||...|.++|.+++... |...-++ .++.+.|||||.|.+.++|.+..+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998754 3333333 35678999999999999999999999998875 345556
Q ss_pred eecC
Q 004788 122 HFSI 125 (730)
Q Consensus 122 ~~s~ 125 (730)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.73 E-value=6.4e-05 Score=86.22 Aligned_cols=165 Identities=15% Similarity=0.047 Sum_probs=119.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcc-CCEEEE---EeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQY-GDIRTL---YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~f-G~I~~V---~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
-..+.+.+-+++.+.+.++.|++++|... -.-..+ .......|-++|.|....++++|++ -+...+..|.+.|..
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGP 385 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecC
Confidence 34456778888999999999999999732 111122 2344457899999999999999987 466666667666643
Q ss_pred cCCCCC------------C-------------C-C---------CccCCceeEEecCCCcchHHHHHHHHcccCCeEE-E
Q 004788 124 SIPKDN------------P-------------S-E---------KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-I 167 (730)
Q Consensus 124 s~pk~~------------~-------------~-~---------~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~-V 167 (730)
...... . . . ...-...|||..||..+++.++.+.|...-.|++ |
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 211100 0 0 0 0011348999999999999999999998777776 5
Q ss_pred Ee----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 168 RE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 168 ri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
.+ +.+.++.|||+|..++++.+|+..-+.+.++.+.|+|.-...++
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 54 33456789999999999999998777778888999998765544
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.67 E-value=6.7e-05 Score=86.32 Aligned_cols=78 Identities=27% Similarity=0.385 Sum_probs=69.8
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe--------cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--------TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri--------tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
+...+.|||.||++.++++.|...|+.||.|..|++ ....+.++||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 445678999999999999999999999999999865 223467899999999999999999999999999999
Q ss_pred EEecCC
Q 004788 206 LEPSRP 211 (730)
Q Consensus 206 V~~A~p 211 (730)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.61 E-value=6.7e-05 Score=78.15 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=69.3
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEE-----EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~V-----ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
+......++|+|++..++.+++..+|+.||.|..+ +..++.++|+||+|.+.+.+++|+. |+|..|.|+.++|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34456789999999999999999999999999744 3456789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 004788 208 PSRPG 212 (730)
Q Consensus 208 ~A~pk 212 (730)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87643
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.54 E-value=0.00014 Score=78.09 Aligned_cols=74 Identities=14% Similarity=0.351 Sum_probs=65.9
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEE--------E----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI--------R----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~V--------r----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
+..|||.|||.++|.+++.++|+++|.|..- + ..++-+|-|.|.|...++..-|++.|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 4569999999999999999999999987652 2 256678899999999999999999999999999999
Q ss_pred EEEecC
Q 004788 205 KLEPSR 210 (730)
Q Consensus 205 kV~~A~ 210 (730)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999875
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.51 E-value=0.00031 Score=61.52 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=48.2
Q ss_pred ceeEEecCCCcchHH----HHHHHHcccC-CeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 138 GTLVVFNLDASVSND----DLRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 138 ~tL~V~NLp~svTee----dLreiFs~fG-~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..|+|.|||.+.+.. .|++++..+| +|..|. .+.|+|.|.+.+.|.+|.+.|+|..+-|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 369999999987765 4667777785 666652 36899999999999999999999999999999999853
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.47 E-value=0.00044 Score=60.61 Aligned_cols=69 Identities=17% Similarity=0.355 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCcHHHHH----HHhhccC-CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 53 RTLFVRNINSNVEDLELR----SLFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~----~lF~~fG-~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..|+|.|||.+.+...|+ .+++.|| +|..|. .+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999999977655 6666776 576663 58999999999999999999999999999999999743
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.43 E-value=0.00016 Score=75.40 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
..+.+.+.+||+|+...++.+++...|+.||.|..+. ..+..+||+||+|.+.+.+++|+. |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3456789999999999999999999999999997443 344589999999999999999999 9999999999999
Q ss_pred eecC
Q 004788 122 HFSI 125 (730)
Q Consensus 122 ~~s~ 125 (730)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8764
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.41 E-value=8.2e-05 Score=75.37 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..+||||.|+...++++-|.++|-+.|.|..|.+. ++.+ ||||.|.++-...-|++.+||..+.+..++|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 46799999999999999999999999999998762 2334 99999999999999999999999999999998754
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.30 E-value=0.00049 Score=63.26 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=50.4
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhC-----CceeCCceEEEEecCCCc
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN-----RSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~Ln-----G~~I~Gr~IkV~~A~pk~ 213 (730)
.|.|.+++..++.++|++.|++||.|..|.+... ...|+|.|.+.++|++|+..+. +..|.+..++++.-. +.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe-Ge 80 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE-GE 80 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE----HH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC-CH
Confidence 5889999999999999999999999999988643 3579999999999999998874 336677777666543 22
Q ss_pred hhhhhhhhchh
Q 004788 214 ARRNLMQQLNQ 224 (730)
Q Consensus 214 ~r~~~~~ql~~ 224 (730)
....+...+..
T Consensus 81 eE~~Yw~ki~e 91 (105)
T PF08777_consen 81 EEEEYWKKIIE 91 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33345555433
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.28 E-value=0.0003 Score=72.79 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCE-----EEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDI-----RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I-----~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
...-+||-+.|..+++++.|-..|.+|-.- ..-+.+++++||+||.|.+..++..|+++|+|+.+..+.|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456899999999999999999999988642 222368899999999999999999999999999999999888654
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.84 E-value=0.0032 Score=57.86 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=39.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccc
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 112 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~ 112 (730)
+.|.|.+++..++.++|+++|++||.|..|... +....|+|.|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468999999999999999999999999999843 35568999999999999999977654
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.00027 Score=83.11 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=114.5
Q ss_pred CcEEEEcCCCCCCcHH-HHHHHhhccCCEEEEEeCC----Cccc-EEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 52 SRTLFVRNINSNVEDL-ELRSLFEQYGDIRTLYTAC----KHRG-FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 52 srtLfV~NLP~~vtee-dL~~lF~~fG~I~~V~~~~----ksrG-~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
.+...+.++.+...+. ..+..|+.+|.|+.|.... .+.. +.++.+....+++.|.. ..+.-+.++...|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 4566788888887776 5789999999999998322 1222 78899999999999877 67777888888888776
Q ss_pred CCCCCCCCcc------CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHh
Q 004788 126 PKDNPSEKDV------NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL 194 (730)
Q Consensus 126 pk~~~~~~~~------~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~L 194 (730)
++........ ...++||+||+..+.+.+|...|..+|.+..+++ .++-+|+|||+|...++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 6543222111 1348999999999999999999999998887753 4566899999999999999999865
Q ss_pred CCceeC
Q 004788 195 NRSDIN 200 (730)
Q Consensus 195 nG~~I~ 200 (730)
.++.++
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 555555
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.78 E-value=0.0041 Score=66.66 Aligned_cols=76 Identities=18% Similarity=0.397 Sum_probs=61.6
Q ss_pred CceeEEecCCCcchHHH------HHHHHcccCCeEEEEecCCC------ccE--EEEEEcCHHHHHHHHHHhCCceeCCc
Q 004788 137 QGTLVVFNLDASVSNDD------LRQIFGAYGEVKEIRETPHK------RHH--KFIEFYDVRAAEAALRALNRSDINGK 202 (730)
Q Consensus 137 ~~tL~V~NLp~svTeed------LreiFs~fG~I~~Vritg~s------kG~--AFVeF~d~e~A~kAL~~LnG~~I~Gr 202 (730)
.+-+||-+|++.+..++ -.++|.+||+|+.|-+..+. .+. .||+|.+.|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44689999999987776 24799999999998653221 122 49999999999999999999999999
Q ss_pred eEEEEecCCC
Q 004788 203 RIKLEPSRPG 212 (730)
Q Consensus 203 ~IkV~~A~pk 212 (730)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997543
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.71 E-value=0.004 Score=50.21 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=43.0
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHH
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 191 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL 191 (730)
+.|.|.+.+.+..+. +...|..||+|..+.++ ......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 468899998777655 55588899999999886 44579999999999999986
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.69 E-value=0.0024 Score=68.38 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCCcHHHH------HHHhhccCCEEEEEeCCCc------cc--EEEEEEcCHHHHHHHHHHhcccccCC
Q 004788 51 PSRTLFVRNINSNVEDLEL------RSLFEQYGDIRTLYTACKH------RG--FVMISYYDIRAARTAMRALQNKPLRR 116 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL------~~lF~~fG~I~~V~~~~ks------rG--~AFV~F~d~e~A~kAl~~Lng~~l~G 116 (730)
...-+||-+||+.+-.|++ .++|.+||.|..|.+..+- .+ -+||.|.+.++|.+||.+.+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3567899999999888873 3899999999998743221 12 25999999999999999999999999
Q ss_pred CcceeeecCC
Q 004788 117 RKLDIHFSIP 126 (730)
Q Consensus 117 r~L~V~~s~p 126 (730)
|-|+..|...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999987643
No 155
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.65 E-value=0.0011 Score=72.44 Aligned_cols=73 Identities=19% Similarity=0.418 Sum_probs=62.0
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhcCCCceeEEEec-ccccccce-eEEEEEeccChHHHHHHHHHHcCCcccC
Q 004788 568 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLP-IDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEK 641 (730)
Q Consensus 568 d~rTTvMirNIPnk~~~~~l~~~id~~~~g~yDf~Ylp-~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~ 641 (730)
+....|.||++|++++...|++.||- +...+.|-|+- -|+....+ .+.|||||..+.++..|...|+|+.+=.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 44568999999999999999999999 88888888765 66554433 6669999999999999999999998754
No 156
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.63 E-value=0.0031 Score=69.60 Aligned_cols=68 Identities=31% Similarity=0.461 Sum_probs=56.3
Q ss_pred CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCC------------------CccEEEEEEcCHHHHHHHHH
Q 004788 131 SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALR 192 (730)
Q Consensus 131 ~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~------------------skG~AFVeF~d~e~A~kAL~ 192 (730)
.......++|++.|||.+-.-+.|.+||+.+|.|+.|++..- .+-+|+|||+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 334456889999999999999999999999999999986211 14569999999999999999
Q ss_pred HhCCce
Q 004788 193 ALNRSD 198 (730)
Q Consensus 193 ~LnG~~ 198 (730)
.|+...
T Consensus 305 ~~~~e~ 310 (484)
T KOG1855|consen 305 LLNPEQ 310 (484)
T ss_pred hhchhh
Confidence 876543
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.60 E-value=0.0049 Score=49.65 Aligned_cols=53 Identities=17% Similarity=0.370 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHH
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 106 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl 106 (730)
++.|-|.+.+++..+.- ...|..||+|..+... ....+.+|+|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEV-LEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHH-HHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 36788999997776554 5589999999999855 56789999999999999985
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.54 E-value=0.01 Score=54.14 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=52.1
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEE------------ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCce-
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR- 203 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr------------itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~- 203 (730)
..-|.|.+.|+. ....|.+.|++||+|.+.. -......+..|+|.+..+|++||. -||..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456999999988 4556778899999998875 123446789999999999999998 6999998854
Q ss_pred EEEEecC
Q 004788 204 IKLEPSR 210 (730)
Q Consensus 204 IkV~~A~ 210 (730)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466663
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.51 E-value=0.0026 Score=69.88 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=80.5
Q ss_pred ceeEEecCCCcchHHHHHHHHccc--CCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCc-eeCCceEEEEecCCCch
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS-DINGKRIKLEPSRPGGA 214 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~f--G~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~-~I~Gr~IkV~~A~pk~~ 214 (730)
..||++||.+.++..+|..+|... +--..+- -..+|+||.+.|..-|.+|++.++|+ ++.|+++.|+.+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999864 1111111 23589999999999999999999998 78999999999988875
Q ss_pred hh--hhhhhchhhhhHHHHHhhhhccCCC
Q 004788 215 RR--NLMQQLNQELEQDEARGFRHQVGSP 241 (730)
Q Consensus 215 r~--~~~~ql~~~~~q~~~~~~~~~~G~p 241 (730)
+. ..+++..+.+.++-+..+..+||.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 54 3556677777788888887787754
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.31 E-value=0.0035 Score=67.97 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=69.7
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEE-------------EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-------------RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 202 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~V-------------ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr 202 (730)
...+|||.+|+..+++.+|.++|.++|.|+.= +++...|+-|.|.|+|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 34589999999999999999999999988643 24677789999999999999999999999999999
Q ss_pred eEEEEecCCCch
Q 004788 203 RIKLEPSRPGGA 214 (730)
Q Consensus 203 ~IkV~~A~pk~~ 214 (730)
.|+|.++..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999999876543
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.0094 Score=62.14 Aligned_cols=86 Identities=27% Similarity=0.385 Sum_probs=72.8
Q ss_pred HHHHHHHHhcccccCCCcceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEE----EEecCCCccE
Q 004788 101 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE----IRETPHKRHH 176 (730)
Q Consensus 101 ~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~----Vritg~skG~ 176 (730)
-|+.|..+|++....++.|+|.|+.. ..|+|.||..-++.+.|.+.|+.||.|.. ++..++..+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 46777788999999999999999853 36999999999999999999999998754 3445566778
Q ss_pred EEEEEcCHHHHHHHHHHhCCc
Q 004788 177 KFIEFYDVRAAEAALRALNRS 197 (730)
Q Consensus 177 AFVeF~d~e~A~kAL~~LnG~ 197 (730)
++|+|...-.|.+|+..+.-.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred chhhhhcchhHHHHHHHhccC
Confidence 999999999999999977433
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.13 E-value=0.0075 Score=65.50 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-------------eCCCcccEEEEEEcCHHHHHHHHHHhcccccC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 115 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-------------~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~ 115 (730)
....-+|||-+||..+++++|.++|.++|.|..=+ .+.+.|+-|.|.|.|...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44578999999999999999999999999885422 46778999999999999999999999999999
Q ss_pred CCcceeeecCC
Q 004788 116 RRKLDIHFSIP 126 (730)
Q Consensus 116 Gr~L~V~~s~p 126 (730)
+..|+|.++..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99988877654
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.05 E-value=0.0032 Score=65.45 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=58.3
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCC-------------cc----EEEEEEcCHHHHHHHHHHhCCce
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHK-------------RH----HKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~s-------------kG----~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
..+.||+++||+.+....|+++|+.||.|-.|.+.+.. .. -|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999988543211 11 27999999999999999999999
Q ss_pred eCCce
Q 004788 199 INGKR 203 (730)
Q Consensus 199 I~Gr~ 203 (730)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99964
No 164
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.01 E-value=0.017 Score=67.10 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=61.1
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeE-EE----EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVK-EI----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~-~V----ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
+.|-+.|+|++++-+||.++|..|-.+- +| ...+...|-|.|-|++.++|.+|...|+++.|..++|+|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4789999999999999999999995331 22 23567788999999999999999999999999999999864
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.92 E-value=0.0089 Score=66.10 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=55.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCC------------------cccEEEEEEcCHHHHHHHHHH
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK------------------HRGFVMISYYDIRAARTAMRA 108 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~k------------------srG~AFV~F~d~e~A~kAl~~ 108 (730)
..+-++|+|.+.|||.+-..+.|.++|..+|.|+.|++... .+-+|+|+|...+.|++|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34568999999999999999999999999999999873211 245799999999999999997
Q ss_pred hcccc
Q 004788 109 LQNKP 113 (730)
Q Consensus 109 Lng~~ 113 (730)
++...
T Consensus 306 ~~~e~ 310 (484)
T KOG1855|consen 306 LNPEQ 310 (484)
T ss_pred hchhh
Confidence 65443
No 166
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.66 E-value=0.085 Score=49.03 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=66.8
Q ss_pred cceeEEeecCCCCCCHHHHHHHHHhcCCCceeEEEecccccccceeEEEEEeccChHHHHHHHHHHcCCcccCCCCccEE
Q 004788 569 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 648 (730)
Q Consensus 569 ~rTTvMirNIPnk~~~~~l~~~id~~~~g~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~K~~ 648 (730)
.+|+|-+=-+|+.++..+++-.+-+.+.....-+.+.-|.. -|.-=+-|-|.+.+++..||+.|||++++.... -+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 34666666889999988777677777777777777666644 466669999999999999999999999988865 459
Q ss_pred EEEe-eecc
Q 004788 649 SLAY-ARIQ 656 (730)
Q Consensus 649 ~v~y-A~iQ 656 (730)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.65 E-value=0.0051 Score=64.10 Aligned_cols=62 Identities=31% Similarity=0.404 Sum_probs=50.9
Q ss_pred HHHHHHHc-ccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 152 DDLRQIFG-AYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 152 edLreiFs-~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
++|...|+ +||+|+++.+ ..+-.|-++|.|...++|++|++.||+.++.|++|..++..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555556 8999998854 23447889999999999999999999999999999999975443
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.55 E-value=0.025 Score=51.67 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE------------eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~------------~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
..+-|.|-+.|+. ....|.+.|++||+|.+.. ..........|+|.+..+|++||. .||+.+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4577899999988 6677889999999998875 122456789999999999999999 7999998764
Q ss_pred c-eeeec
Q 004788 119 L-DIHFS 124 (730)
Q Consensus 119 L-~V~~s 124 (730)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45655
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.50 E-value=0.0094 Score=62.08 Aligned_cols=68 Identities=21% Similarity=0.429 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeC-------------CCccc----EEEEEEcCHHHHHHHHHHhcccc
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-------------CKHRG----FVMISYYDIRAARTAMRALQNKP 113 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~-------------~ksrG----~AFV~F~d~e~A~kAl~~Lng~~ 113 (730)
..-.||+++||+.++-.-|+++|+.||.|-.|+.. +.+++ -+.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999999821 12222 27799999999999999999999
Q ss_pred cCCCc
Q 004788 114 LRRRK 118 (730)
Q Consensus 114 l~Gr~ 118 (730)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.46 E-value=0.028 Score=59.60 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=50.4
Q ss_pred HHHHHHHHcccCCeEEEEec---C---CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 151 NDDLRQIFGAYGEVKEIRET---P---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 151 eedLreiFs~fG~I~~Vrit---g---~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
++++++.+++||.|..|-+. . +..--.||+|...++|.+|+-.|||+.|+|+.++..|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 57899999999999887431 1 1122479999999999999999999999999999988753
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.43 E-value=0.061 Score=52.17 Aligned_cols=75 Identities=32% Similarity=0.407 Sum_probs=53.8
Q ss_pred cCCceeEEecCC-----C-cch---HHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 135 VNQGTLVVFNLD-----A-SVS---NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 135 ~~~~tL~V~NLp-----~-svT---eedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
....||.|.=+. . ... -.+|.+.|..||+|.-||+.+ +.-+|+|.+-+.|.+|+. ++|.++.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 345677777555 1 122 237888899999999998864 357999999999999997 999999999999
Q ss_pred EEecCCCc
Q 004788 206 LEPSRPGG 213 (730)
Q Consensus 206 V~~A~pk~ 213 (730)
|....|.-
T Consensus 101 i~LKtpdW 108 (146)
T PF08952_consen 101 IRLKTPDW 108 (146)
T ss_dssp EEE-----
T ss_pred EEeCCccH
Confidence 99987754
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.036 Score=63.19 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCceeEEecCCCcc------hHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC-CceE
Q 004788 136 NQGTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN-GKRI 204 (730)
Q Consensus 136 ~~~tL~V~NLp~sv------TeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~-Gr~I 204 (730)
....|+|.|+|--- -..-|.++|+++|+|..+.+ .+..+||.|++|.+.++|+.|++.|||+.|+ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 35579999998521 23457789999999887743 4567899999999999999999999999885 4666
Q ss_pred EEE
Q 004788 205 KLE 207 (730)
Q Consensus 205 kV~ 207 (730)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 654
No 173
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.30 E-value=0.015 Score=62.64 Aligned_cols=77 Identities=21% Similarity=0.425 Sum_probs=67.9
Q ss_pred CCcEEE-EcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 51 PSRTLF-VRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 51 psrtLf-V~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
++.++| |++|+.++++++|+..|..+|.|..++ .++..+|+|+|.|.+...+..++.. +...+.++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999987 4667899999999999999999987 888899999999887
Q ss_pred CCCC
Q 004788 125 IPKD 128 (730)
Q Consensus 125 ~pk~ 128 (730)
.+..
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6653
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.94 E-value=0.08 Score=59.20 Aligned_cols=81 Identities=28% Similarity=0.363 Sum_probs=70.8
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhcCCCceeEEEecccccccceeEEEEEeccChHHHHHHHHHHcCCcccCCCCccEEE
Q 004788 570 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 649 (730)
Q Consensus 570 rTTvMirNIPnk~~~~~l~~~id~~~~g~yDf~Ylp~df~~~~n~gyaFinf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 649 (730)
-|+|-|=-+|+.+|.-+|+..+.....-=-|+--++ | .--|.--+-|-|.+..++..||+.|||+.++..-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 588999999999999999999998877777888888 3 445556699999999999999999999999988777 999
Q ss_pred EEeee
Q 004788 650 LAYAR 654 (730)
Q Consensus 650 v~yA~ 654 (730)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.038 Score=63.06 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCC--Cc----HHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccC-CCc
Q 004788 50 HPSRTLFVRNINSN--VE----DLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRK 118 (730)
Q Consensus 50 ~psrtLfV~NLP~~--vt----eedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~-Gr~ 118 (730)
.-...|+|.|+|-- .. ..-|..+|+++|+|..++ ..+..+||+|++|.+.++|+.|++.|+|+.|. .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34688999999832 11 234568899999998887 45679999999999999999999999998875 445
Q ss_pred ceee
Q 004788 119 LDIH 122 (730)
Q Consensus 119 L~V~ 122 (730)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5553
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.38 E-value=0.021 Score=59.59 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=47.3
Q ss_pred HHHHHHhh-ccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 67 LELRSLFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 67 edL~~lF~-~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
++|...|+ +||+|+.+.+ ...-+|-+||.|...++|++|+..||+..+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444444 9999998852 2235788999999999999999999999999999998876
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.81 E-value=0.046 Score=62.73 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=64.4
Q ss_pred CCceeEEecCCCcchHHHHHHHHc-ccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCcee---CCceEEEEecCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFG-AYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRIKLEPSRP 211 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs-~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I---~Gr~IkV~~A~p 211 (730)
..+.|+|.||-.-+|.-+|+.++. ..|.|.+..++ +-|..|||.|.+.++|.+.+.+|||... +++.|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 356899999999999999999999 56677776554 4467899999999999999999999965 679999999864
Q ss_pred C
Q 004788 212 G 212 (730)
Q Consensus 212 k 212 (730)
.
T Consensus 522 d 522 (718)
T KOG2416|consen 522 D 522 (718)
T ss_pred h
Confidence 3
No 178
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.29 E-value=0.18 Score=57.44 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=54.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhh-ccCCEEEEEe--C---CCcccEEEEEEcCHHHHHHHHHH
Q 004788 45 HPYGEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYT--A---CKHRGFVMISYYDIRAARTAMRA 108 (730)
Q Consensus 45 ~~~~e~psrtLfV~NLP~~vteedL~~lF~-~fG~I~~V~~--~---~ksrG~AFV~F~d~e~A~kAl~~ 108 (730)
....-++.+||||++||.-++.++|..+|+ -||.|..+-+ + +-.+|-+-|.|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 334456789999999999999999999999 8999987753 2 23689999999999999999984
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.26 E-value=0.028 Score=67.19 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=77.6
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecC----CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC--
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR-- 210 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg----~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~-- 210 (730)
..+||++||+..+++.+|+..|..+|.|.+|++.- ...-|+||.|.+...+-.|..++.+..|..-.+++.+..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 45899999999999999999999999999997622 223589999999999999999999998876666776664
Q ss_pred CCchhhhhhhhchhhhhHHHHHhhhhccC
Q 004788 211 PGGARRNLMQQLNQELEQDEARGFRHQVG 239 (730)
Q Consensus 211 pk~~r~~~~~ql~~~~~q~~~~~~~~~~G 239 (730)
....++.+.+.+-.+.....+...+..+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fG 480 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFG 480 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccC
Confidence 33344445555555555555554444433
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.16 E-value=0.34 Score=46.87 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=57.7
Q ss_pred CCCCCCcEEEEcCCCCCCc----HHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 47 YGEHPSRTLFVRNINSNVE----DLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vt----eedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
..+.|-.||.|+=|..++. .+.+...++.||+|.+|... .+-.|.|.|.|..+|-+|+.+++. ..-|..+...
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 3466789999987776654 33455677899999999855 457899999999999999999876 4556666666
Q ss_pred ec
Q 004788 123 FS 124 (730)
Q Consensus 123 ~s 124 (730)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 54
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.99 E-value=0.075 Score=61.06 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=61.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhh-ccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccccc---CCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~-~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l---~Gr~L~V~~ 123 (730)
...++..|+|.||-.-.|.-+|+.++. ..|.|...++. +-+..|||.|.+.++|.....+|+|..+ +.+.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 456789999999999999999999999 56667776644 5677899999999999999999998765 345555555
Q ss_pred c
Q 004788 124 S 124 (730)
Q Consensus 124 s 124 (730)
.
T Consensus 519 ~ 519 (718)
T KOG2416|consen 519 V 519 (718)
T ss_pred c
Confidence 4
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.19 E-value=0.26 Score=47.96 Aligned_cols=73 Identities=25% Similarity=0.345 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCC-----CCCcHH----HHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 50 HPSRTLFVRNIN-----SNVEDL----ELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 50 ~psrtLfV~NLP-----~~vtee----dL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
.|..||.|.=+. ...-++ +|.+.|..||+|.-++.. .+.-.|.|.+-+.|-+|+. ++|..+.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 356788887555 112233 677889999998877632 3578999999999999998 999999999999
Q ss_pred eeecCC
Q 004788 121 IHFSIP 126 (730)
Q Consensus 121 V~~s~p 126 (730)
|....|
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 987654
No 183
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.98 E-value=0.39 Score=52.98 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=58.7
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEecCC--------CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~--------skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
+.|.|.||.+.++.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|.. |..+.+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999976442 23479999999999988876 6667666777766655
Q ss_pred C
Q 004788 210 R 210 (730)
Q Consensus 210 ~ 210 (730)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.78 E-value=0.56 Score=41.47 Aligned_cols=55 Identities=13% Similarity=0.291 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 110 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Ln 110 (730)
....+|+ +|..+...||.++|+.||.|.--.+. ...|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 4567776 99999999999999999998876643 4579999999999999998775
No 185
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.72 E-value=0.17 Score=54.93 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=58.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCC--EEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~--I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.-.+||+||-+.+|++||.+.+...|- +.+++ ..+.+||||+|...+..+.++.|+.|-.+.|+|+.-.|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 457999999999999999998886662 33333 578899999999999999999999888888888765553
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.31 E-value=0.8 Score=40.55 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=43.2
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR 196 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG 196 (730)
....+|. +|..+...||.++|+.||.|.---+.. .-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhcc
Confidence 3456666 999999999999999999987766653 3599999999999999998763
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.21 E-value=0.94 Score=43.90 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=56.5
Q ss_pred ccCCceeEEecCCCcc----hHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 134 DVNQGTLVVFNLDASV----SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 134 ~~~~~tL~V~NLp~sv----TeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
+..-.||+|+=|..++ +-..+...++.||.|.+|...|+ .-|.|.|.|..+|-+|+.++.. ..-|..+.+.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3445689987665554 33445556678999999987664 4799999999999999998876 667788888886
Q ss_pred C
Q 004788 210 R 210 (730)
Q Consensus 210 ~ 210 (730)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.07 E-value=0.23 Score=53.85 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCC--eEEE-----EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGE--VKEI-----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~--I~~V-----ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
-.+||+||-|-+|++||.+.....|. +.++ |..+.+||||+|-..+..+.++.++.|-.++|.|..-.|-..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 47999999999999999999887662 3333 457789999999999999999999999999999976666544
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.05 E-value=0.24 Score=55.74 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=53.7
Q ss_pred hHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 150 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 150 TeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
+.++|...|.+||+|..|.+.-. .-.|.|+|.+..+|-+|-. .++..|+++.|+|.|-.+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 56889999999999999987533 4569999999999988875 69999999999999998865
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.91 E-value=0.39 Score=51.25 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=55.3
Q ss_pred CCcEEEEcCC--CCCCc---HHHHHHHhhccCCEEEEEeC---CC---cccEEEEEEcCHHHHHHHHHHhcccccCCCcc
Q 004788 51 PSRTLFVRNI--NSNVE---DLELRSLFEQYGDIRTLYTA---CK---HRGFVMISYYDIRAARTAMRALQNKPLRRRKL 119 (730)
Q Consensus 51 psrtLfV~NL--P~~vt---eedL~~lF~~fG~I~~V~~~---~k---srG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L 119 (730)
+++.|.++|. +-.++ ++++++.+++||.|..|.+. +. ..--.||+|...++|.+|+-.|||..|.||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 4445555554 22333 45678889999999887621 11 12248999999999999999999999999999
Q ss_pred eeeecC
Q 004788 120 DIHFSI 125 (730)
Q Consensus 120 ~V~~s~ 125 (730)
...|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 888764
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.86 E-value=0.85 Score=38.14 Aligned_cols=52 Identities=29% Similarity=0.377 Sum_probs=40.4
Q ss_pred ceeEEecCCCcchHHHHHHHHccc----CCeEEE-EecCCCccEEEEEEcCHHHHHHHHHHh
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAY----GEVKEI-RETPHKRHHKFIEFYDVRAAEAALRAL 194 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~f----G~I~~V-ritg~skG~AFVeF~d~e~A~kAL~~L 194 (730)
..|+|++++ +++.++|+.+|..| +. ..| .+... -|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 479999996 68899999999999 43 233 23322 4789999999999999865
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.05 E-value=0.26 Score=49.51 Aligned_cols=68 Identities=7% Similarity=0.044 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc-cCCE---EEEE--e-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~-fG~I---~~V~--~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
.....|.||+||+++|++++.+.+.. ++.- ..+. . ......-|||.|.+.+++......++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 34579999999999999999998876 6665 3332 1 111233599999999999999999999877543
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.26 E-value=0.95 Score=52.07 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcccccCCCcceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcc--cCCeEEEEecCCCccE
Q 004788 99 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGA--YGEVKEIRETPHKRHH 176 (730)
Q Consensus 99 ~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~--fG~I~~Vritg~skG~ 176 (730)
.+-..++++..-+..+..+-++|... .+.+.|.|+-|+..+..|+++.+|+. +-++.+|.+--. .-
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~n 214 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DN 214 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--Cc
Confidence 33344555555555555555555422 22456888999999999999999985 667777765322 23
Q ss_pred EEEEEcCHHHHHHHHHHhCC--ceeCCceEEE
Q 004788 177 KFIEFYDVRAAEAALRALNR--SDINGKRIKL 206 (730)
Q Consensus 177 AFVeF~d~e~A~kAL~~LnG--~~I~Gr~IkV 206 (730)
-||+|++..||+.|.+.|.. ++|.||.|..
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 59999999999999988743 4677776644
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.99 E-value=1.5 Score=36.78 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=41.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcc----CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHh
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRAL 109 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~f----G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~L 109 (730)
..+|+|+++. +++.++|+.+|..| ++.+-=++. -..|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 3689999996 79999999999999 543221221 235779999999999999864
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.43 E-value=0.87 Score=52.37 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=58.3
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhc--cCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcc--cccCCCc
Q 004788 43 GEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRK 118 (730)
Q Consensus 43 ge~~~~e~psrtLfV~NLP~~vteedL~~lF~~--fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng--~~l~Gr~ 118 (730)
++.-...+.-+.|.++-||..+-+|+++.||+. |-++.+|.-. ...--||+|++..||++|.+.|.. +.|.|++
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 333344455678899999999999999999984 6677777622 233468999999999999998865 4567776
Q ss_pred ceee
Q 004788 119 LDIH 122 (730)
Q Consensus 119 L~V~ 122 (730)
|..+
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 6543
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.26 E-value=1.4 Score=44.57 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=45.6
Q ss_pred hHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhC--CceeCCceEEEEecCCCc
Q 004788 150 SNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 150 TeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~Ln--G~~I~Gr~IkV~~A~pk~ 213 (730)
..+.|+++|..|+.+..+..-+.- +-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988877654332 458899999999999999999 999999999999996543
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.90 E-value=0.5 Score=51.40 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=60.3
Q ss_pred CcEEEEcCCCCCCcHHHHH---HHhhccCCEEEEEeCCCc------c--cEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 52 SRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTACKH------R--GFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~---~lF~~fG~I~~V~~~~ks------r--G~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
..-+||-+|+..+.++.+. +.|.+||.|..|...+.. . .-++|+|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678888999887766664 788899999988743211 1 1489999999999999999999999999988
Q ss_pred eeecCCC
Q 004788 121 IHFSIPK 127 (730)
Q Consensus 121 V~~s~pk 127 (730)
+.+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8776543
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.25 E-value=0.46 Score=51.65 Aligned_cols=76 Identities=14% Similarity=0.311 Sum_probs=59.6
Q ss_pred ceeEEecCCCcchHHHHH---HHHcccCCeEEEEecCCC--------ccEEEEEEcCHHHHHHHHHHhCCceeCCceEEE
Q 004788 138 GTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 206 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLr---eiFs~fG~I~~Vritg~s--------kG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV 206 (730)
.-+||-+|+..+..+.+. +.|.+||.|..|...... ..-++|+|...++|..||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457788888776555443 588899999998653322 123899999999999999999999999999998
Q ss_pred EecCCCc
Q 004788 207 EPSRPGG 213 (730)
Q Consensus 207 ~~A~pk~ 213 (730)
.+...+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8877654
No 199
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.95 E-value=4.5 Score=43.69 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=53.5
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc-eEEEEecC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKLEPSR 210 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr-~IkV~~A~ 210 (730)
.=|.|.++++.-. .-|..+|++||+|.+.... .+..+-+|+|.++-+|.+||. -||+.|+|. -|-|..+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 3577888876644 4566789999999886543 666799999999999999998 599999875 34455543
No 200
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.13 E-value=2 Score=41.17 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=72.9
Q ss_pred CCcHHHHHHHhh----ccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCCCCCccC--
Q 004788 63 NVEDLELRSLFE----QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVN-- 136 (730)
Q Consensus 63 ~vteedL~~lF~----~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~~~~~-- 136 (730)
..+-..|...+. ..|.+.-.. -..++..++|.+.+++.++++ .....+.+..+.++.-.+..........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~---l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~ 103 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD---LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHI 103 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE---eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceecc
Confidence 355666655554 344433333 457899999999999999987 4556677877777766654443332222
Q ss_pred CceeEEecCCCc-chHHHHHHHHcccCCeEEEEecC
Q 004788 137 QGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETP 171 (730)
Q Consensus 137 ~~tL~V~NLp~s-vTeedLreiFs~fG~I~~Vritg 171 (730)
.-=|.|.|||.. .+++-++.+.+.+|++.+++...
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 224778899988 67888999999999999997643
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.57 E-value=2 Score=43.62 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=45.2
Q ss_pred CcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc--ccccCCCcceeeecCCC
Q 004788 64 VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 64 vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Ln--g~~l~Gr~L~V~~s~pk 127 (730)
-..+.|+++|..|+.+..+..- ++-+-..|.|.+.++|.+|...|+ +..+.|..+++.|..+.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3458899999999998877643 344557899999999999999999 89999999999988543
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.85 E-value=1.1 Score=53.69 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=58.8
Q ss_pred eEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCcee--CCceEEEEecCCC
Q 004788 140 LVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI--NGKRIKLEPSRPG 212 (730)
Q Consensus 140 L~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I--~Gr~IkV~~A~pk 212 (730)
..+.|.+-..+-.-|..+|.+||.|.+.+.- +.-..|.|+|...+.|..|+++|+|+++ -|-..+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4445555577788899999999999998753 2235799999999999999999999975 6778999998754
No 203
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.45 E-value=1.9 Score=45.48 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEE----EeCCCcccEEEEEEcCHHHHHHHHHHhcc
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQN 111 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V----~~~~ksrG~AFV~F~d~e~A~kAl~~Lng 111 (730)
..|||.||..-+.-+.|.+.|+.||+|... ...++..+-++|.|...-.|.+|++.+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 889999999999999999999999997643 35667788899999999999999987743
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.47 E-value=3 Score=45.00 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=49.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
.=|-|-++|+. .-..|..+|++||+|.+.... ..-.+-+|.|.+.-+|++||. .+|+.|.|.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 44556677754 345677899999999988754 667799999999999999998 688888664
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.84 E-value=8.2 Score=32.98 Aligned_cols=59 Identities=24% Similarity=0.395 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHcccC-----CeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 147 ASVSNDDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 147 ~svTeedLreiFs~fG-----~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
..++..+|..++..-+ .|-.|++. ..|.||+-.. +.|.++++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577788888887664 45566664 3588998764 6899999999999999999999865
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.50 E-value=2.7 Score=37.63 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=44.8
Q ss_pred EEEEEcCHHHHHHHHHHh-cccccCCCcceeeecCCCCCC-----CCCccCCceeEEecCCCcchHHHHHHHHc
Q 004788 92 VMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNP-----SEKDVNQGTLVVFNLDASVSNDDLRQIFG 159 (730)
Q Consensus 92 AFV~F~d~e~A~kAl~~L-ng~~l~Gr~L~V~~s~pk~~~-----~~~~~~~~tL~V~NLp~svTeedLreiFs 159 (730)
|.|+|.+..-|++-++.- +...+.+..+.|....-.... .......++|.|+|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988732 123345555555433111111 11234567999999999999999998654
No 207
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.91 E-value=46 Score=36.16 Aligned_cols=144 Identities=17% Similarity=0.302 Sum_probs=91.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCC------------CcccEEEEEEcCHHHHHHHHH----Hhcc--c
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTAC------------KHRGFVMISYYDIRAARTAMR----ALQN--K 112 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~------------ksrG~AFV~F~d~e~A~kAl~----~Lng--~ 112 (730)
.+|.|...|+..+++-..+...|.+||+|++|+.-. +....+.+.|-+.+.+-.... .|.. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998321 234678999999988765432 2322 3
Q ss_pred ccCCCcceeeecCCCCC------CCCCc----------------cCCceeEEecCCCcchHHH-HHHHH---cccCC---
Q 004788 113 PLRRRKLDIHFSIPKDN------PSEKD----------------VNQGTLVVFNLDASVSNDD-LRQIF---GAYGE--- 163 (730)
Q Consensus 113 ~l~Gr~L~V~~s~pk~~------~~~~~----------------~~~~tL~V~NLp~svTeed-LreiF---s~fG~--- 163 (730)
.++...|.+.|..-+-. ..+.. ...+.|.|.= ...+.+++ +.+.+ ..-+.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceE
Confidence 46677788777642110 00000 0134566652 23443333 33222 22232
Q ss_pred -eEEEEe-------cCCCccEEEEEEcCHHHHHHHHHHhC
Q 004788 164 -VKEIRE-------TPHKRHHKFIEFYDVRAAEAALRALN 195 (730)
Q Consensus 164 -I~~Vri-------tg~skG~AFVeF~d~e~A~kAL~~Ln 195 (730)
|+.|.+ ..-.+.||.+.|-+...|...++.+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 344432 11236799999999999999998775
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=74.64 E-value=20 Score=33.44 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCC-EEEEE--eCCC-cccEEEEEEcCHHHHHHHHHHhcccccC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLY--TACK-HRGFVMISYYDIRAARTAMRALQNKPLR 115 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~-I~~V~--~~~k-srG~AFV~F~d~e~A~kAl~~Lng~~l~ 115 (730)
.+..+.+-..|..++-++|..+.+.+-+ |..++ .++. ++-.+.++|.+.++|++..+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455555555566666777766666544 44444 2333 4556999999999999999999999875
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=74.16 E-value=2.2 Score=48.35 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCCCcEEEEcCCCCCC-cHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 49 EHPSRTLFVRNINSNV-EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 49 e~psrtLfV~NLP~~v-teedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
+.+.+.|-+.-+|... +-++|...|.+||+|..|.+... ---|.|+|.+..+|-+|.. ..+..|++|.|+|.|-.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4566777787777765 46789999999999999985433 4569999999999988876 7899999999999998764
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=69.90 E-value=17 Score=30.89 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=44.4
Q ss_pred cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEE
Q 004788 148 SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 206 (730)
Q Consensus 148 svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV 206 (730)
.++-++++..+..|+- ..|+. +..|| ||.|.+.++|+++.+..+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999974 44443 33454 89999999999999999999998877765
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=68.19 E-value=5 Score=47.37 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=60.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
...++||+|+...+..+-++.+...+|-|..+... .|+|++|..+..+.+|+..+.-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45689999999999999999999999999887643 2999999999999999999999899888776654
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=65.91 E-value=4.4 Score=47.84 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
.+.-+|||+||-..+..+-++.+...+|-|.++.... |+|..|.....+..|+..+....+.|.++.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4578999999999999999999999999998886332 999999999999999999998999888887654
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=63.73 E-value=4.5 Score=48.94 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=58.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccccc--CCCcceeeecCCC
Q 004788 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSIPK 127 (730)
Q Consensus 54 tLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l--~Gr~L~V~~s~pk 127 (730)
+.++-|.+-+.+-.-|..+|.+||.|.+.+.- +.-..|.|+|...+.|..|+++|+|+++ -|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 33445555677888899999999999999842 4566899999999999999999999886 4778888877654
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.74 E-value=22 Score=30.16 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 63 NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 63 ~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
.++-++|+..+..|+-.+-+. ...| -||.|.+.++|++|.+..+++.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~---d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRD---DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEe---cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999998543332 2234 478999999999999999998887666544
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.34 E-value=59 Score=38.31 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHhhcc----CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSN-VEDLELRSLFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~-vteedL~~lF~~f----G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....++++|-|-|+.++ |.-++|..+|..| |.|.+|.+... +|-. ..|....+.|-++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS-------eFGk--------eRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS-------EFGK--------ERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh-------hhhH--------HHhhhhcccCChhhh
Confidence 33567899999999976 8899999999865 47888774221 1111 223333444544443
Q ss_pred eecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 004788 122 HFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING 201 (730)
Q Consensus 122 ~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G 201 (730)
. .+........ .+....++-.+.-+.+|+. .. ..--||.|+|.+.+.|.+..+.++|.++..
T Consensus 234 ~--~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~-~r-----LkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 F--KPVEEYKESE----------SDDEEEEDVDREKLRQYQL-NR-----LKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred c--cccccCcccc----------cchhhhhhHHHHHHHHHHh-hh-----heeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 2 1111111110 1111112223444444432 11 123579999999999999999999999965
Q ss_pred c--eEEEEec
Q 004788 202 K--RIKLEPS 209 (730)
Q Consensus 202 r--~IkV~~A 209 (730)
. .|-+.|-
T Consensus 296 S~~~~DLRFI 305 (650)
T KOG2318|consen 296 SANKLDLRFI 305 (650)
T ss_pred ccceeeeeec
Confidence 4 4444443
No 216
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.08 E-value=8.2 Score=41.13 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=53.5
Q ss_pred CceeEEecCCCc------------chHHHHHHHHcccCCeEEEEe----------cCCC-----ccE---------EEEE
Q 004788 137 QGTLVVFNLDAS------------VSNDDLRQIFGAYGEVKEIRE----------TPHK-----RHH---------KFIE 180 (730)
Q Consensus 137 ~~tL~V~NLp~s------------vTeedLreiFs~fG~I~~Vri----------tg~s-----kG~---------AFVe 180 (730)
..||++.+||-. -+++.|+..|+.||.|..|.+ +++. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 458888888742 357889999999999998843 2222 233 4566
Q ss_pred EcCHHHHHHHHHHhCCcee----CC----ceEEEEecCCCchhhhhhhhc
Q 004788 181 FYDVRAAEAALRALNRSDI----NG----KRIKLEPSRPGGARRNLMQQL 222 (730)
Q Consensus 181 F~d~e~A~kAL~~LnG~~I----~G----r~IkV~~A~pk~~r~~~~~ql 222 (730)
|.....-..|+.+|.|..+ +| -.|+|.|.+++--....+...
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhlsevqiakr 278 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLSEVQIAKR 278 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhhHHHHHHH
Confidence 6555555566666655532 33 367888887765433333333
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=49.73 E-value=48 Score=28.27 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHhhccCC-----EEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 62 SNVEDLELRSLFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 62 ~~vteedL~~lF~~fG~-----I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..++..+|..++...+. |-.|.. ...|+||+-.. +.|+++++.|++..+.|+++.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 45788899988887654 445553 35688888765 588899999999999999999875
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.55 E-value=14 Score=37.25 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=51.3
Q ss_pred eeEEecCCCcch-----HHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc-eEEEEecCCC
Q 004788 139 TLVVFNLDASVS-----NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKLEPSRPG 212 (730)
Q Consensus 139 tL~V~NLp~svT-----eedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr-~IkV~~A~pk 212 (730)
++.+.+++..+- ......+|.+|-+..-.++. ++.+..-|.|.+.+.|..|...+++..+.|+ .++.-++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 456666655432 23445566655544333332 3345678899999999999999999999998 8999898875
Q ss_pred c
Q 004788 213 G 213 (730)
Q Consensus 213 ~ 213 (730)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.10 E-value=65 Score=36.91 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=52.3
Q ss_pred CceeEEecCCCcchHHHHHHHHcccC-CeEEEEe--cC-CCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRE--TP-HKRHHKFIEFYDVRAAEAALRALNRSDING 201 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG-~I~~Vri--tg-~skG~AFVeF~d~e~A~kAL~~LnG~~I~G 201 (730)
...|.|-.+|..++-.||..++..+- .|..+++ ++ ..+-.+.|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999988764 3455544 22 234468999999999999999999998764
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.58 E-value=13 Score=39.77 Aligned_cols=62 Identities=27% Similarity=0.474 Sum_probs=44.4
Q ss_pred cEEEEcCCCCC------------CcHHHHHHHhhccCCEEEEE----------eCCCc-----ccE---------EEEEE
Q 004788 53 RTLFVRNINSN------------VEDLELRSLFEQYGDIRTLY----------TACKH-----RGF---------VMISY 96 (730)
Q Consensus 53 rtLfV~NLP~~------------vteedL~~lF~~fG~I~~V~----------~~~ks-----rG~---------AFV~F 96 (730)
.||++.+||-. -+++-|+..|+.||.|+.|. .+++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 68899888843 35788999999999999886 23332 333 45667
Q ss_pred cCHHHHHHHHHHhccccc
Q 004788 97 YDIRAARTAMRALQNKPL 114 (730)
Q Consensus 97 ~d~e~A~kAl~~Lng~~l 114 (730)
.....-..||.+|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666666777877777654
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.01 E-value=52 Score=35.51 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHH
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIR 100 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e 100 (730)
..-|+|+||+.++.-.||+..+.+-|.+---..-..+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 4669999999999999999999987754322223457889999997654
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=34.46 E-value=74 Score=28.32 Aligned_cols=55 Identities=15% Similarity=0.361 Sum_probs=40.2
Q ss_pred eeEEecCCCcchHHHHHHHHcc-cC-CeEEEEe--cCCCccEEEEEEcCHHHHHHHHHH
Q 004788 139 TLVVFNLDASVSNDDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~-fG-~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
.-|+.-++...+..+|++.++. || +|..|+. .+....-|||++..-.+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 4566668889999999999997 55 5666653 223334599999998888877554
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=31.51 E-value=86 Score=27.91 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=39.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-cC-CEEEEEeCC--CcccEEEEEEcCHHHHHHHHHH
Q 004788 55 LFVRNINSNVEDLELRSLFEQ-YG-DIRTLYTAC--KHRGFVMISYYDIRAARTAMRA 108 (730)
Q Consensus 55 LfV~NLP~~vteedL~~lF~~-fG-~I~~V~~~~--ksrG~AFV~F~d~e~A~kAl~~ 108 (730)
-|+--++.+++..+|++.++. || +|.+|.+.. ....-|||.+....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 444457889999999999997 55 466776322 3334699999998888876553
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.36 E-value=94 Score=27.20 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=39.4
Q ss_pred eeEEecCCCcchHHHHHHHHcc-cC-CeEEEEe--cCCCccEEEEEEcCHHHHHHHHHH
Q 004788 139 TLVVFNLDASVSNDDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~-fG-~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
.-|+..++.+.+..+|++.++. || +|..|+. .+...--|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4677778899999999999887 55 5666643 222334599999888887766543
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.43 E-value=36 Score=34.53 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=53.0
Q ss_pred CcEEEEcCCCCCCcH-----HHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCC-cceeeecC
Q 004788 52 SRTLFVRNINSNVED-----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSI 125 (730)
Q Consensus 52 srtLfV~NLP~~vte-----edL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr-~L~V~~s~ 125 (730)
..++.+.+|+.++-. ....++|.+|-+..... --++.+..-|.|.+.+.|..|...+++..|.|+ .++..++.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq-~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQ-LLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHH-HHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 366788888866432 23346666665444332 224667788999999999999999999999998 77776665
Q ss_pred CC
Q 004788 126 PK 127 (730)
Q Consensus 126 pk 127 (730)
+.
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 43
No 226
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=28.59 E-value=1.4e+02 Score=33.07 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHhcCCCceeEEEecccccccceeEEEE-----EeccChHHHHHHHHHHcCCcccCCCCccEEEEEeeec
Q 004788 581 KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAF-----INMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYARI 655 (730)
Q Consensus 581 k~~~~~l~~~id~~~~g~yDf~Ylp~df~~~~n~gyaF-----inf~~~~~~~~f~~~f~g~~w~~~~s~K~~~v~yA~i 655 (730)
+++++.|+.+|+-.....||= ..=|| |-.-|-| ||=++...-.++...|-.+... ..---|..+.+..+
T Consensus 243 RIs~etlk~vl~g~~~~~f~k-CiIID----CRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplT-hp~aLifHCEfSsh 316 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLK-CIIID----CRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLT-HPRALIFHCEFSSH 316 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhc-eeEEe----ecceeeecCceeeeeeecchHHHHHHHHHhcccc-CceeEEEEeecccc
Confidence 568999999999876555442 22333 3344433 5555544455555566555422 11223445556666
Q ss_pred cchHHHHHHhccCccccCCCCeeeeEEecC
Q 004788 656 QGQAALVTHFQNSSLMNEDKRCRPIVFHSE 685 (730)
Q Consensus 656 QG~~~l~~~f~~s~~~~~~~~~~P~~f~~~ 685 (730)
.|.. |-+||||.--|.-...| |.||+++
T Consensus 317 RaP~-LA~HlRN~DR~~N~dhY-P~L~yPe 344 (427)
T COG5105 317 RAPR-LAQHLRNMDRMKNPDHY-PLLTYPE 344 (427)
T ss_pred cchh-HHHHHhhhhhhcCcccC-cccccce
Confidence 6654 89999998755433333 5666554
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=1.5e+02 Score=33.72 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=42.3
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCC----eEEEEecCCCccEEEEEEcCHHHHHHHHH
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGE----VKEIRETPHKRHHKFIEFYDVRAAEAALR 192 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~----I~~Vritg~skG~AFVeF~d~e~A~kAL~ 192 (730)
...|-|.++|...-.+||...|..|+. |+-|. ...+|-.|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-----cceeEEeecchHHHHHHhh
Confidence 458999999999999999999999964 33333 3479999999999999996
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=1.1e+02 Score=34.55 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC----EEEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGD----IRTLYTACKHRGFVMISYYDIRAARTAMR 107 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~----I~~V~~~~ksrG~AFV~F~d~e~A~kAl~ 107 (730)
.-.+.|-|.++|.....+||...|+.|+. |.-|. ...||..|.....|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-----cceeEEeecchHHHHHHhh
Confidence 34689999999999999999999999985 44333 4478999999999999987
No 229
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=22.96 E-value=53 Score=40.24 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhhccCCE
Q 004788 50 HPSRTLFVRNINSN-VEDLELRSLFEQYGDI 79 (730)
Q Consensus 50 ~psrtLfV~NLP~~-vteedL~~lF~~fG~I 79 (730)
-.+|||+|..||.+ .++++|.++|.+.+..
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~ 236 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKVG 236 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCee
Confidence 36899999999987 5677899999987643
No 230
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.36 E-value=1.4e+02 Score=26.27 Aligned_cols=35 Identities=11% Similarity=0.364 Sum_probs=26.2
Q ss_pred CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccc
Q 004788 78 DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 112 (730)
Q Consensus 78 ~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~ 112 (730)
.|.++.....-+||.||+=.+..++.+|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 57787777779999999999999999999866543
Done!