Query 004788
Match_columns 730
No_of_seqs 649 out of 2761
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.4E-30 8.2E-35 260.8 17.3 166 49-216 12-185 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 5.7E-29 1.9E-33 236.9 19.2 157 53-211 1-166 (166)
3 3smz_A Protein raver-1, ribonu 100.0 8.9E-29 3E-33 258.4 19.2 201 50-277 20-234 (284)
4 1b7f_A Protein (SXL-lethal pro 100.0 2.1E-28 7.1E-33 234.2 19.1 155 51-209 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 3.2E-28 1.1E-32 232.0 19.1 155 51-209 1-167 (167)
6 2qfj_A FBP-interacting repress 100.0 3.6E-28 1.2E-32 242.3 18.6 165 50-214 26-207 (216)
7 2adc_A Polypyrimidine tract-bi 100.0 8.1E-28 2.8E-32 244.9 21.0 164 49-212 31-228 (229)
8 1l3k_A Heterogeneous nuclear r 100.0 4.5E-28 1.5E-32 238.0 18.0 169 46-216 7-187 (196)
9 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-27 3.8E-32 249.8 21.3 163 48-210 5-281 (282)
10 1fje_B Nucleolin RBD12, protei 100.0 1.2E-28 4E-33 238.5 12.8 162 48-212 9-174 (175)
11 2ghp_A U4/U6 snRNA-associated 100.0 6.8E-28 2.3E-32 252.7 17.7 205 46-277 35-262 (292)
12 2g4b_A Splicing factor U2AF 65 100.0 1.5E-27 5.1E-32 229.5 17.4 154 50-209 2-171 (172)
13 1qm9_A Polypyrimidine tract-bi 100.0 1E-27 3.4E-32 237.1 16.3 162 51-212 2-197 (198)
14 2cjk_A Nuclear polyadenylated 99.9 5.4E-28 1.9E-32 231.5 13.6 155 51-212 2-166 (167)
15 3nmr_A Cugbp ELAV-like family 99.9 2.9E-27 9.9E-32 227.4 17.9 157 51-210 2-175 (175)
16 2yh0_A Splicing factor U2AF 65 99.9 2.5E-27 8.6E-32 233.0 17.4 162 51-214 3-196 (198)
17 3tyt_A Heterogeneous nuclear r 99.9 4.8E-27 1.6E-31 236.7 18.6 159 51-209 3-204 (205)
18 3smz_A Protein raver-1, ribonu 99.9 1.6E-26 5.6E-31 241.2 19.7 170 51-221 94-273 (284)
19 2ghp_A U4/U6 snRNA-associated 99.9 1E-25 3.5E-30 236.1 17.7 161 51-212 116-291 (292)
20 3sde_A Paraspeckle component 1 99.9 3.6E-25 1.2E-29 229.8 18.1 156 49-215 19-182 (261)
21 2i2y_A Fusion protein consists 99.8 2.9E-19 9.8E-24 170.3 12.7 128 85-213 9-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-18 5.1E-23 166.2 15.4 132 84-215 8-153 (158)
23 4f25_A Polyadenylate-binding p 99.7 2.7E-18 9.3E-23 156.9 9.9 103 51-153 4-113 (115)
24 3lqv_A PRE-mRNA branch site pr 99.6 2.3E-16 7.8E-21 143.3 9.0 103 49-163 5-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.6 7.2E-16 2.5E-20 137.5 10.0 75 137-211 19-98 (99)
26 4fxv_A ELAV-like protein 1; RN 99.6 6.1E-16 2.1E-20 138.0 9.4 76 51-126 18-98 (99)
27 3tyt_A Heterogeneous nuclear r 99.6 5.7E-16 1.9E-20 155.8 9.9 127 136-277 3-173 (205)
28 2lea_A Serine/arginine-rich sp 99.6 3.9E-16 1.3E-20 146.9 8.1 121 90-215 5-130 (135)
29 4f02_A Polyadenylate-binding p 99.6 5E-16 1.7E-20 156.1 9.3 127 136-277 14-151 (213)
30 3s8s_A Histone-lysine N-methyl 99.6 2.1E-15 7E-20 137.3 11.0 84 136-219 5-93 (110)
31 1fxl_A Paraneoplastic encephal 99.6 1.2E-15 4.1E-20 144.8 9.4 126 137-277 2-138 (167)
32 1b7f_A Protein (SXL-lethal pro 99.6 2.2E-15 7.5E-20 143.6 9.7 126 137-277 3-139 (168)
33 3md3_A Nuclear and cytoplasmic 99.6 2E-15 7E-20 143.0 8.8 125 138-277 1-137 (166)
34 2hvz_A Splicing factor, argini 99.6 2.5E-15 8.4E-20 133.3 8.7 94 53-146 1-100 (101)
35 4f25_A Polyadenylate-binding p 99.6 3.7E-15 1.3E-19 136.0 10.0 80 137-216 5-87 (115)
36 1whw_A Hypothetical protein ri 99.6 8.3E-15 2.8E-19 129.2 11.7 81 50-130 6-91 (99)
37 3s8s_A Histone-lysine N-methyl 99.6 4.2E-15 1.4E-19 135.2 9.9 78 49-126 3-85 (110)
38 3r27_A HnRNP L, heterogeneous 99.6 5.3E-15 1.8E-19 132.8 10.2 80 48-128 17-98 (100)
39 1x4a_A Splicing factor, argini 99.6 1.4E-14 4.8E-19 130.3 12.9 84 47-130 17-102 (109)
40 1x5u_A Splicing factor 3B subu 99.6 1.4E-14 4.7E-19 129.2 12.6 84 46-129 9-97 (105)
41 2lxi_A RNA-binding protein 10; 99.6 1.4E-15 4.7E-20 133.4 6.0 79 52-130 1-86 (91)
42 1l3k_A Heterogeneous nuclear r 99.6 3.1E-15 1.1E-19 146.3 8.8 128 134-277 10-154 (196)
43 2d9p_A Polyadenylate-binding p 99.6 1.4E-14 4.7E-19 128.9 12.2 85 46-130 9-96 (103)
44 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.9E-15 1.7E-19 143.5 9.9 123 94-216 11-156 (165)
45 1wex_A Hypothetical protein (r 99.6 2E-14 6.7E-19 129.7 13.1 84 45-129 8-93 (104)
46 2cph_A RNA binding motif prote 99.6 1.9E-14 6.6E-19 128.5 13.0 85 46-130 9-100 (107)
47 2do4_A Squamous cell carcinoma 99.6 1.2E-14 4.2E-19 128.5 11.4 82 47-128 12-97 (100)
48 2dnm_A SRP46 splicing factor; 99.6 9.8E-15 3.4E-19 129.8 10.7 85 46-130 7-96 (103)
49 2qfj_A FBP-interacting repress 99.6 3.8E-15 1.3E-19 148.0 8.9 126 137-277 28-175 (216)
50 1whw_A Hypothetical protein ri 99.6 1.3E-14 4.3E-19 128.0 11.3 81 135-215 6-91 (99)
51 1sjq_A Polypyrimidine tract-bi 99.6 9.5E-15 3.2E-19 132.3 10.6 82 49-131 13-96 (105)
52 2dgo_A Cytotoxic granule-assoc 99.6 1.7E-14 5.8E-19 130.8 12.3 84 47-130 10-98 (115)
53 2lxi_A RNA-binding protein 10; 99.6 2.3E-15 7.8E-20 132.0 6.2 77 138-214 2-85 (91)
54 2cq3_A RNA-binding protein 9; 99.6 2.5E-14 8.5E-19 127.2 12.9 84 47-130 10-96 (103)
55 2dgv_A HnRNP M, heterogeneous 99.6 1.6E-14 5.5E-19 125.5 11.4 81 49-129 5-88 (92)
56 2dnz_A Probable RNA-binding pr 99.6 1.6E-14 5.6E-19 126.2 11.5 81 50-130 3-88 (95)
57 2dnh_A Bruno-like 5, RNA bindi 99.6 2.7E-14 9.2E-19 127.3 13.1 83 48-130 11-100 (105)
58 2cpz_A CUG triplet repeat RNA- 99.6 1.3E-14 4.3E-19 131.8 11.1 84 47-130 20-108 (115)
59 2cqi_A Nucleolysin TIAR; RNA r 99.6 2E-14 6.9E-19 127.8 12.2 84 47-130 10-96 (103)
60 2dgs_A DAZ-associated protein 99.6 2.2E-14 7.5E-19 126.6 12.3 81 49-130 7-92 (99)
61 2cq0_A Eukaryotic translation 99.6 1.3E-14 4.3E-19 129.1 10.7 84 47-130 10-98 (103)
62 3sde_A Paraspeckle component 1 99.6 4.7E-15 1.6E-19 153.7 9.0 126 134-277 19-145 (261)
63 2e5h_A Zinc finger CCHC-type a 99.6 1.3E-14 4.3E-19 126.7 10.2 77 49-125 13-94 (94)
64 2x1f_A MRNA 3'-END-processing 99.6 1.1E-14 3.9E-19 127.9 9.9 79 51-129 1-84 (96)
65 2do4_A Squamous cell carcinoma 99.6 2.3E-14 7.7E-19 126.8 11.8 81 134-214 14-98 (100)
66 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.8E-15 3E-19 125.7 8.8 77 51-127 5-86 (87)
67 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 133.7 10.9 92 41-133 20-113 (119)
68 3md1_A Nuclear and cytoplasmic 99.5 1.2E-14 4.2E-19 123.7 9.4 77 52-128 1-82 (83)
69 3lqv_A PRE-mRNA branch site pr 99.5 1.6E-14 5.4E-19 131.0 10.6 102 136-241 7-110 (115)
70 1x4a_A Splicing factor, argini 99.5 2.5E-14 8.7E-19 128.6 11.9 81 134-214 19-101 (109)
71 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.5E-14 5.2E-19 124.2 9.9 77 136-212 5-86 (87)
72 2jrs_A RNA-binding protein 39; 99.5 3.4E-14 1.2E-18 128.4 12.6 83 46-128 20-107 (108)
73 1p27_B RNA-binding protein 8A; 99.5 1.6E-14 5.5E-19 129.0 10.2 81 48-128 19-104 (106)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.5E-14 5E-19 123.8 9.4 76 50-125 5-85 (85)
75 2cqc_A Arginine/serine-rich sp 99.5 1.5E-14 5.2E-19 126.2 9.7 79 48-126 11-94 (95)
76 1x4h_A RNA-binding protein 28; 99.5 3.6E-14 1.2E-18 127.6 12.4 84 47-130 10-104 (111)
77 1why_A Hypothetical protein ri 99.5 4E-14 1.4E-18 124.7 12.4 79 49-128 14-94 (97)
78 1x4d_A Matrin 3; structural ge 99.5 1.9E-14 6.6E-19 129.6 10.5 81 48-129 11-94 (102)
79 1x5u_A Splicing factor 3B subu 99.5 2.2E-14 7.7E-19 127.8 10.9 82 134-215 12-98 (105)
80 2cph_A RNA binding motif prote 99.5 2.7E-14 9.3E-19 127.5 11.4 83 133-215 11-100 (107)
81 2cpf_A RNA binding motif prote 99.5 1.8E-14 6.1E-19 126.9 10.0 81 50-130 3-91 (98)
82 2ywk_A Putative RNA-binding pr 99.5 1.1E-14 3.7E-19 127.3 8.5 80 46-125 10-93 (95)
83 2cq1_A PTB-like protein L; RRM 99.5 2.9E-14 1E-18 128.0 11.5 84 46-130 9-94 (101)
84 1x5s_A Cold-inducible RNA-bind 99.5 2E-14 7E-19 127.4 10.4 82 49-130 9-95 (102)
85 3md1_A Nuclear and cytoplasmic 99.5 2.4E-14 8.3E-19 121.8 10.3 76 138-213 2-82 (83)
86 3r27_A HnRNP L, heterogeneous 99.5 1.8E-14 6.3E-19 129.3 10.0 78 135-213 19-98 (100)
87 2dnq_A RNA-binding protein 4B; 99.5 3.4E-14 1.2E-18 123.4 11.4 78 50-130 6-83 (90)
88 1sjq_A Polypyrimidine tract-bi 99.5 1.1E-14 3.7E-19 131.9 8.4 81 135-216 14-96 (105)
89 2cqc_A Arginine/serine-rich sp 99.5 3.3E-14 1.1E-18 124.1 11.3 79 134-212 12-95 (95)
90 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.9E-14 1.3E-18 126.0 11.9 83 134-216 12-97 (103)
91 2d9p_A Polyadenylate-binding p 99.5 2.7E-14 9.1E-19 127.0 10.7 84 133-216 11-97 (103)
92 2cq0_A Eukaryotic translation 99.5 2.5E-14 8.5E-19 127.2 10.5 82 134-215 12-98 (103)
93 2kxn_B Transformer-2 protein h 99.5 2.1E-14 7.1E-19 134.2 10.4 83 46-128 40-127 (129)
94 2cpz_A CUG triplet repeat RNA- 99.5 2.1E-14 7.2E-19 130.4 10.2 81 135-215 23-108 (115)
95 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5E-19 126.7 8.7 73 137-210 7-79 (89)
96 2dgp_A Bruno-like 4, RNA bindi 99.5 3.2E-14 1.1E-18 127.0 11.1 82 48-129 9-98 (106)
97 2dgo_A Cytotoxic granule-assoc 99.5 3.8E-14 1.3E-18 128.5 11.6 83 134-216 12-99 (115)
98 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.8E-14 9.7E-19 121.9 10.1 76 135-210 5-85 (85)
99 2dnz_A Probable RNA-binding pr 99.5 3.4E-14 1.1E-18 124.2 10.7 80 136-215 4-88 (95)
100 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.7E-14 5.9E-19 127.9 8.9 82 49-130 9-95 (102)
101 2dgs_A DAZ-associated protein 99.5 3.9E-14 1.3E-18 125.1 11.1 80 135-215 8-92 (99)
102 2x1f_A MRNA 3'-END-processing 99.5 3.8E-14 1.3E-18 124.5 10.9 79 137-215 2-85 (96)
103 2cjk_A Nuclear polyadenylated 99.5 1.2E-14 4.2E-19 138.5 8.3 124 137-277 3-137 (167)
104 1x5t_A Splicing factor 3B subu 99.5 1.4E-14 4.7E-19 126.9 7.9 81 50-130 3-89 (96)
105 2lkz_A RNA-binding protein 5; 99.5 8.6E-15 3E-19 130.0 6.6 76 136-211 8-94 (95)
106 2cqd_A RNA-binding region cont 99.5 4.2E-14 1.4E-18 128.6 11.3 84 46-130 11-99 (116)
107 1wi8_A EIF-4B, eukaryotic tran 99.5 4.5E-14 1.5E-18 125.9 11.3 83 46-130 9-97 (104)
108 2dnq_A RNA-binding protein 4B; 99.5 3.4E-14 1.2E-18 123.4 10.2 78 135-215 6-83 (90)
109 2cq1_A PTB-like protein L; RRM 99.5 4.7E-14 1.6E-18 126.6 11.3 81 135-216 13-95 (101)
110 1why_A Hypothetical protein ri 99.5 4.9E-14 1.7E-18 124.1 11.2 78 136-214 16-95 (97)
111 2e5j_A Methenyltetrahydrofolat 99.5 3.9E-14 1.3E-18 124.9 10.5 80 49-128 16-95 (97)
112 1wf1_A RNA-binding protein RAL 99.5 2.7E-14 9.1E-19 128.8 9.6 95 115-213 6-101 (110)
113 2dgt_A RNA-binding protein 30; 99.5 3.8E-14 1.3E-18 123.6 10.2 81 47-130 5-85 (92)
114 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3E-14 1E-18 126.3 9.7 81 135-215 10-95 (102)
115 1fjc_A Nucleolin RBD2, protein 99.5 2E-14 7E-19 126.0 8.5 82 134-215 13-94 (96)
116 4a8x_A RNA-binding protein wit 99.5 3.1E-14 1.1E-18 122.3 9.5 79 136-214 3-87 (88)
117 2e5h_A Zinc finger CCHC-type a 99.5 6.5E-14 2.2E-18 122.1 11.6 76 135-210 14-94 (94)
118 2dhg_A TRNA selenocysteine ass 99.5 5.6E-14 1.9E-18 125.0 11.4 83 48-130 5-93 (104)
119 2dh8_A DAZ-associated protein 99.5 3.2E-14 1.1E-18 127.0 9.8 83 47-130 11-98 (105)
120 1x4h_A RNA-binding protein 28; 99.5 6.1E-14 2.1E-18 126.1 11.7 82 135-216 13-105 (111)
121 1oo0_B CG8781-PA, drosophila Y 99.5 2.9E-14 1E-18 128.2 9.7 82 47-128 21-107 (110)
122 1oo0_B CG8781-PA, drosophila Y 99.5 3.7E-14 1.3E-18 127.6 10.3 81 135-215 24-109 (110)
123 2khc_A Testis-specific RNP-typ 99.5 4.5E-14 1.6E-18 128.6 11.0 80 46-125 34-118 (118)
124 2cpf_A RNA binding motif prote 99.5 2.7E-14 9.3E-19 125.7 9.1 80 136-215 4-91 (98)
125 2cq3_A RNA-binding protein 9; 99.5 7E-14 2.4E-18 124.3 11.9 82 134-215 12-96 (103)
126 2dnh_A Bruno-like 5, RNA bindi 99.5 5.5E-14 1.9E-18 125.3 11.2 82 135-216 13-101 (105)
127 3nmr_A Cugbp ELAV-like family 99.5 1.1E-14 3.7E-19 139.5 7.0 126 137-277 3-144 (175)
128 2cpx_A Hypothetical protein FL 99.5 5.9E-14 2E-18 127.1 11.6 83 48-130 21-108 (115)
129 1fjc_A Nucleolin RBD2, protein 99.5 1.8E-14 6E-19 126.4 7.8 82 48-129 12-93 (96)
130 2dgx_A KIAA0430 protein; RRM d 99.5 4.7E-14 1.6E-18 124.3 10.6 79 136-214 8-92 (96)
131 3pgw_S U1-70K; protein-RNA com 99.5 7.8E-15 2.7E-19 163.7 6.9 146 69-214 9-184 (437)
132 2cpj_A Non-POU domain-containi 99.5 4.3E-14 1.5E-18 124.9 10.2 80 49-129 12-91 (99)
133 1p27_B RNA-binding protein 8A; 99.5 2.9E-14 9.9E-19 127.3 9.2 80 135-214 21-105 (106)
134 2ytc_A PRE-mRNA-splicing facto 99.5 4.1E-14 1.4E-18 121.1 9.7 78 47-125 7-85 (85)
135 2fc9_A NCL protein; structure 99.5 3.5E-14 1.2E-18 125.8 9.5 83 48-130 11-94 (101)
136 2jvr_A Nucleolar protein 3; RN 99.5 3E-14 1E-18 130.2 9.2 77 137-213 28-106 (111)
137 2dnm_A SRP46 splicing factor; 99.5 3.6E-14 1.2E-18 126.1 9.6 82 134-215 10-96 (103)
138 1x4f_A Matrin 3; structural ge 99.5 4.1E-14 1.4E-18 129.6 10.1 81 49-130 22-105 (112)
139 2do0_A HnRNP M, heterogeneous 99.5 8.7E-14 3E-18 125.8 12.1 80 48-127 11-94 (114)
140 2dng_A Eukaryotic translation 99.5 7E-14 2.4E-18 124.4 11.2 83 46-130 9-96 (103)
141 2dgt_A RNA-binding protein 30; 99.5 7.1E-14 2.4E-18 121.8 11.0 79 134-215 7-85 (92)
142 1x4d_A Matrin 3; structural ge 99.5 3.6E-14 1.2E-18 127.7 9.3 77 136-213 14-93 (102)
143 1x5s_A Cold-inducible RNA-bind 99.5 2.9E-14 9.8E-19 126.4 8.5 81 135-215 10-95 (102)
144 2ywk_A Putative RNA-binding pr 99.5 4.8E-14 1.6E-18 123.2 9.8 78 135-212 14-95 (95)
145 2dgv_A HnRNP M, heterogeneous 99.5 3.8E-14 1.3E-18 123.1 9.1 81 135-215 6-89 (92)
146 2a3j_A U1 small nuclear ribonu 99.5 5.7E-14 1.9E-18 131.3 10.9 80 49-128 26-111 (127)
147 1wex_A Hypothetical protein (r 99.5 5E-14 1.7E-18 127.1 10.2 80 135-215 13-94 (104)
148 2fy1_A RNA-binding motif prote 99.5 5E-14 1.7E-18 128.9 10.3 81 49-129 4-88 (116)
149 2div_A TRNA selenocysteine ass 99.5 3.7E-14 1.3E-18 125.0 9.0 79 50-128 7-95 (99)
150 4a8x_A RNA-binding protein wit 99.5 4.7E-14 1.6E-18 121.2 9.3 77 51-127 3-85 (88)
151 3p5t_L Cleavage and polyadenyl 99.5 1.3E-14 4.6E-19 126.2 5.9 77 53-129 2-85 (90)
152 3ex7_B RNA-binding protein 8A; 99.5 6.5E-14 2.2E-18 129.0 10.8 84 47-130 17-105 (126)
153 2lkz_A RNA-binding protein 5; 99.5 1.7E-14 5.9E-19 128.0 6.7 78 49-126 6-94 (95)
154 2jvo_A Nucleolar protein 3; nu 99.5 4.2E-14 1.4E-18 127.9 9.3 80 133-215 27-106 (108)
155 2m2b_A RNA-binding protein 10; 99.5 5E-14 1.7E-18 131.3 10.1 85 45-130 16-111 (131)
156 1p1t_A Cleavage stimulation fa 99.5 1.3E-14 4.5E-19 128.9 5.9 81 48-128 4-89 (104)
157 1x5t_A Splicing factor 3B subu 99.5 3.1E-14 1.1E-18 124.7 8.2 80 136-215 4-89 (96)
158 2g4b_A Splicing factor U2AF 65 99.5 2.1E-14 7.1E-19 137.5 7.7 125 136-277 3-144 (172)
159 2jrs_A RNA-binding protein 39; 99.5 6E-14 2E-18 126.8 10.3 81 133-213 22-107 (108)
160 1u6f_A Tcubp1, RNA-binding pro 99.5 5.6E-14 1.9E-18 131.6 10.4 84 133-216 38-126 (139)
161 2la6_A RNA-binding protein FUS 99.5 5.3E-14 1.8E-18 124.3 9.7 77 48-124 9-98 (99)
162 2la4_A Nuclear and cytoplasmic 99.5 3.3E-14 1.1E-18 125.9 8.3 76 136-212 26-101 (101)
163 1u6f_A Tcubp1, RNA-binding pro 99.5 6.9E-14 2.4E-18 131.0 10.9 84 47-130 37-125 (139)
164 2dnp_A RNA-binding protein 14; 99.5 6.7E-14 2.3E-18 121.5 10.1 78 134-214 6-83 (90)
165 2ad9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 131.2 8.9 81 135-216 29-111 (119)
166 2dgu_A Heterogeneous nuclear r 99.5 8.9E-14 3E-18 123.9 11.0 79 49-130 8-86 (103)
167 2e5j_A Methenyltetrahydrofolat 99.5 4.5E-14 1.5E-18 124.5 9.0 79 135-213 17-95 (97)
168 2cpe_A RNA-binding protein EWS 99.5 6.9E-14 2.4E-18 126.4 10.4 84 47-130 10-106 (113)
169 2la4_A Nuclear and cytoplasmic 99.5 3.4E-14 1.1E-18 125.9 8.1 76 51-127 26-101 (101)
170 1nu4_A U1A RNA binding domain; 99.5 3.1E-14 1.1E-18 124.9 7.8 80 49-128 5-90 (97)
171 2xnq_A Nuclear polyadenylated 99.5 9.9E-14 3.4E-18 122.9 11.1 76 135-213 20-96 (97)
172 2err_A Ataxin-2-binding protei 99.5 3.4E-14 1.2E-18 128.4 8.2 81 47-127 24-107 (109)
173 2kvi_A Nuclear polyadenylated 99.5 5E-14 1.7E-18 124.1 9.0 79 49-130 7-86 (96)
174 3ns6_A Eukaryotic translation 99.5 1.9E-14 6.6E-19 128.0 6.5 77 51-127 5-93 (100)
175 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.9E-18 121.5 12.0 77 135-214 13-91 (99)
176 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.8E-18 121.6 11.9 79 48-129 11-91 (99)
177 2dgu_A Heterogeneous nuclear r 99.5 7.5E-14 2.6E-18 124.4 10.2 79 135-216 9-87 (103)
178 1x4g_A Nucleolysin TIAR; struc 99.5 7.4E-14 2.5E-18 125.7 10.2 80 135-215 23-102 (109)
179 3p5t_L Cleavage and polyadenyl 99.5 1.4E-14 4.8E-19 126.1 5.3 77 138-214 2-85 (90)
180 2fc8_A NCL protein; structure 99.5 6E-14 2.1E-18 124.3 9.5 83 48-130 11-95 (102)
181 2dgp_A Bruno-like 4, RNA bindi 99.5 6.3E-14 2.1E-18 125.1 9.6 82 134-215 10-99 (106)
182 2err_A Ataxin-2-binding protei 99.5 5.5E-14 1.9E-18 127.0 9.3 81 132-212 24-107 (109)
183 1x4c_A Splicing factor, argini 99.5 1.4E-13 4.7E-18 123.9 11.8 79 49-129 12-95 (108)
184 1x4c_A Splicing factor, argini 99.5 1.1E-13 3.6E-18 124.7 11.0 77 136-214 14-95 (108)
185 2dnp_A RNA-binding protein 14; 99.5 9.6E-14 3.3E-18 120.5 10.3 78 49-129 6-83 (90)
186 1wi8_A EIF-4B, eukaryotic tran 99.5 8.4E-14 2.9E-18 124.1 10.2 79 135-215 13-97 (104)
187 2ytc_A PRE-mRNA-splicing facto 99.5 8.2E-14 2.8E-18 119.2 9.7 76 134-210 9-85 (85)
188 2cpi_A CCR4-NOT transcription 99.5 8.9E-14 3.1E-18 125.9 10.5 80 134-213 12-102 (111)
189 1x4e_A RNA binding motif, sing 99.5 3.7E-14 1.3E-18 121.5 7.5 76 50-125 3-83 (85)
190 3ulh_A THO complex subunit 4; 99.5 7E-14 2.4E-18 125.0 9.6 78 48-125 25-106 (107)
191 2khc_A Testis-specific RNP-typ 99.5 7.2E-14 2.5E-18 127.3 9.7 77 134-210 37-118 (118)
192 2cq4_A RNA binding motif prote 99.5 2.9E-14 1E-18 129.2 7.0 80 135-215 23-107 (114)
193 2kxn_B Transformer-2 protein h 99.5 7.7E-14 2.6E-18 130.3 10.1 79 135-213 44-127 (129)
194 2xnq_A Nuclear polyadenylated 99.5 1E-13 3.6E-18 122.7 10.4 77 48-127 18-95 (97)
195 1x4g_A Nucleolysin TIAR; struc 99.5 1E-13 3.5E-18 124.8 10.5 81 49-130 22-102 (109)
196 2cpj_A Non-POU domain-containi 99.5 8.1E-14 2.8E-18 123.1 9.7 79 135-214 13-91 (99)
197 2fc9_A NCL protein; structure 99.5 6.1E-14 2.1E-18 124.2 8.8 82 134-215 12-94 (101)
198 2nlw_A Eukaryotic translation 99.5 9.8E-14 3.3E-18 124.4 10.2 80 48-127 11-100 (105)
199 2lea_A Serine/arginine-rich sp 99.5 3.8E-14 1.3E-18 133.3 7.8 87 44-130 39-130 (135)
200 2la6_A RNA-binding protein FUS 99.5 1E-13 3.4E-18 122.5 10.1 77 134-210 10-99 (99)
201 2fy1_A RNA-binding motif prote 99.5 7.2E-14 2.5E-18 127.8 9.4 79 136-214 6-88 (116)
202 3ns6_A Eukaryotic translation 99.5 3.1E-14 1E-18 126.7 6.8 76 137-212 6-93 (100)
203 2wbr_A GW182, gawky, LD47780P; 99.5 4.6E-14 1.6E-18 123.5 7.7 73 51-124 6-78 (89)
204 2jvo_A Nucleolar protein 3; nu 99.5 5.9E-14 2E-18 126.9 8.6 80 46-128 25-104 (108)
205 2cpe_A RNA-binding protein EWS 99.5 8.9E-14 3.1E-18 125.7 9.8 82 134-215 12-106 (113)
206 1x5o_A RNA binding motif, sing 99.5 2.7E-13 9.4E-18 122.6 13.0 80 48-127 21-112 (114)
207 2a3j_A U1 small nuclear ribonu 99.5 8.3E-14 2.8E-18 130.2 9.7 82 135-216 27-114 (127)
208 2adc_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 142.1 9.8 78 135-212 32-110 (229)
209 1p1t_A Cleavage stimulation fa 99.5 4.1E-14 1.4E-18 125.7 7.2 82 135-216 6-92 (104)
210 3pgw_A U1-A; protein-RNA compl 99.5 8.8E-14 3E-18 144.6 10.9 79 135-213 7-91 (282)
211 2krb_A Eukaryotic translation 99.5 7.7E-14 2.6E-18 118.9 8.6 71 52-122 1-81 (81)
212 2dgx_A KIAA0430 protein; RRM d 99.5 1E-13 3.5E-18 122.2 9.7 80 51-130 8-93 (96)
213 2dis_A Unnamed protein product 99.5 1.4E-13 4.9E-18 123.4 10.8 81 50-130 6-95 (109)
214 2cq4_A RNA binding motif prote 99.5 3E-14 1E-18 129.1 6.4 79 48-127 21-104 (114)
215 2do0_A HnRNP M, heterogeneous 99.5 1.8E-13 6.1E-18 123.7 11.4 81 135-215 13-97 (114)
216 2cqd_A RNA-binding region cont 99.5 1.2E-13 3.9E-18 125.6 10.1 82 133-215 13-99 (116)
217 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.4E-13 4.8E-18 131.7 11.1 82 135-216 37-123 (156)
218 1x5p_A Negative elongation fac 99.5 2.4E-13 8.4E-18 119.7 11.8 80 48-130 11-90 (97)
219 2dhg_A TRNA selenocysteine ass 99.5 7.1E-14 2.4E-18 124.3 8.4 82 135-216 7-94 (104)
220 3ex7_B RNA-binding protein 8A; 99.5 8.8E-14 3E-18 128.1 9.3 81 135-215 20-105 (126)
221 2fc8_A NCL protein; structure 99.5 1.3E-13 4.6E-18 122.1 10.1 83 133-215 11-95 (102)
222 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.9E-18 119.2 9.3 76 136-212 5-85 (89)
223 1whx_A Hypothetical protein ri 99.5 9.3E-14 3.2E-18 126.1 9.2 77 50-127 8-84 (111)
224 1wf1_A RNA-binding protein RAL 99.5 1.3E-13 4.4E-18 124.3 10.0 77 49-128 24-101 (110)
225 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.2E-14 2.5E-18 124.1 8.1 79 48-128 15-99 (100)
226 2kt5_A RNA and export factor-b 99.5 2.8E-13 9.6E-18 124.7 12.4 83 48-130 31-117 (124)
227 1nu4_A U1A RNA binding domain; 99.5 8.4E-14 2.9E-18 122.1 8.5 81 135-215 6-92 (97)
228 3ucg_A Polyadenylate-binding p 99.5 1E-13 3.5E-18 119.5 8.8 76 51-127 5-85 (89)
229 2cqh_A IGF-II mRNA-binding pro 99.5 5.4E-14 1.8E-18 122.7 7.1 79 135-215 6-86 (93)
230 3s7r_A Heterogeneous nuclear r 99.5 9.2E-14 3.2E-18 119.6 8.5 76 48-124 7-87 (87)
231 2i2y_A Fusion protein consists 99.5 2.1E-13 7E-18 129.7 11.7 82 47-128 68-149 (150)
232 2dng_A Eukaryotic translation 99.5 1.8E-13 6.3E-18 121.7 10.6 79 135-215 13-96 (103)
233 2cqh_A IGF-II mRNA-binding pro 99.5 5.4E-14 1.8E-18 122.7 7.0 79 50-130 6-86 (93)
234 2cqp_A RNA-binding protein 12; 99.5 5.9E-14 2E-18 123.5 7.3 78 49-126 12-94 (98)
235 2hvz_A Splicing factor, argini 99.5 4.5E-14 1.5E-18 125.1 6.6 77 138-214 1-77 (101)
236 3zzy_A Polypyrimidine tract-bi 99.5 1.2E-13 4.1E-18 129.6 9.7 76 138-213 29-107 (130)
237 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.9E-13 6.5E-18 130.8 11.3 82 48-129 35-121 (156)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.9E-13 6.5E-18 127.5 11.0 78 47-124 58-140 (140)
239 2cqg_A TDP-43, TAR DNA-binding 99.5 2.6E-13 8.8E-18 120.6 11.3 82 47-130 10-96 (103)
240 2kvi_A Nuclear polyadenylated 99.5 8.1E-14 2.8E-18 122.7 7.9 78 135-215 8-86 (96)
241 1fje_B Nucleolin RBD12, protei 99.5 3.5E-14 1.2E-18 136.8 6.0 125 134-277 10-144 (175)
242 3ulh_A THO complex subunit 4; 99.5 1.9E-13 6.5E-18 122.2 10.4 76 135-210 27-106 (107)
243 2jwn_A Embryonic polyadenylate 99.5 2.5E-14 8.5E-19 131.4 4.7 77 136-213 35-116 (124)
244 2div_A TRNA selenocysteine ass 99.5 9.2E-14 3.1E-18 122.5 8.2 79 135-213 7-95 (99)
245 2yh0_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 138.1 7.0 124 137-277 4-164 (198)
246 1whx_A Hypothetical protein ri 99.5 9.9E-14 3.4E-18 126.0 8.6 76 136-212 9-84 (111)
247 2nlw_A Eukaryotic translation 99.5 1.8E-13 6.3E-18 122.6 10.2 78 135-212 13-100 (105)
248 1x5p_A Negative elongation fac 99.5 3.3E-13 1.1E-17 118.9 11.6 78 135-215 13-90 (97)
249 2cqp_A RNA-binding protein 12; 99.5 1.1E-13 3.9E-18 121.6 8.5 78 135-212 13-95 (98)
250 2ek1_A RNA-binding protein 12; 99.5 3.5E-14 1.2E-18 124.1 5.1 77 49-125 12-93 (95)
251 2cpi_A CCR4-NOT transcription 99.5 9.6E-14 3.3E-18 125.7 8.0 80 49-128 12-102 (111)
252 1qm9_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 137.8 7.5 76 137-212 3-79 (198)
253 2cpx_A Hypothetical protein FL 99.5 1.3E-13 4.3E-18 124.9 8.7 81 135-215 23-108 (115)
254 2jvr_A Nucleolar protein 3; RN 99.5 8.4E-14 2.9E-18 127.2 7.6 78 50-127 26-105 (111)
255 1x4f_A Matrin 3; structural ge 99.5 7.7E-14 2.6E-18 127.7 7.3 79 135-214 23-104 (112)
256 2kt5_A RNA and export factor-b 99.5 4.5E-13 1.5E-17 123.3 12.4 79 135-213 33-115 (124)
257 1wg5_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 120.8 11.0 79 49-128 12-95 (104)
258 2kn4_A Immunoglobulin G-bindin 99.4 3.4E-13 1.1E-17 128.9 11.8 82 49-130 67-153 (158)
259 2rs2_A Musashi-1, RNA-binding 99.4 1.9E-13 6.5E-18 123.6 9.5 81 134-215 22-107 (109)
260 1s79_A Lupus LA protein; RRM, 99.4 1.5E-13 5E-18 123.6 8.7 77 49-126 8-88 (103)
261 2ek1_A RNA-binding protein 12; 99.4 7.9E-14 2.7E-18 121.8 6.7 76 136-211 14-94 (95)
262 3n9u_C Cleavage and polyadenyl 99.4 1.4E-13 4.9E-18 132.8 9.1 79 136-214 54-139 (156)
263 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.1E-14 3.1E-18 123.4 7.1 77 135-213 17-99 (100)
264 2dh8_A DAZ-associated protein 99.4 1.4E-13 4.8E-18 122.8 8.3 81 134-215 13-98 (105)
265 2dgw_A Probable RNA-binding pr 99.4 1.9E-13 6.4E-18 118.8 8.7 78 49-128 7-88 (91)
266 2dis_A Unnamed protein product 99.4 1.7E-13 6E-18 122.8 8.6 81 135-215 6-95 (109)
267 1x4b_A Heterogeneous nuclear r 99.4 1.3E-13 4.5E-18 125.3 7.8 80 135-215 25-109 (116)
268 1wg1_A KIAA1579 protein, homol 99.4 1.7E-13 5.9E-18 118.7 8.2 75 136-212 4-78 (88)
269 2e44_A Insulin-like growth fac 99.4 4.9E-13 1.7E-17 117.1 11.1 79 50-128 13-93 (96)
270 3s7r_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 116.0 9.8 75 134-209 8-87 (87)
271 1x4e_A RNA binding motif, sing 99.4 6.2E-14 2.1E-18 120.2 5.1 76 136-211 4-84 (85)
272 2e44_A Insulin-like growth fac 99.4 4E-13 1.4E-17 117.7 10.3 78 136-213 14-93 (96)
273 2rs2_A Musashi-1, RNA-binding 99.4 1.9E-13 6.4E-18 123.6 8.4 81 48-129 21-106 (109)
274 3n9u_C Cleavage and polyadenyl 99.4 1.3E-13 4.4E-18 133.1 7.8 77 51-127 54-137 (156)
275 2mss_A Protein (musashi1); RNA 99.4 1.2E-13 4.2E-18 115.5 6.7 70 139-209 1-75 (75)
276 1s79_A Lupus LA protein; RRM, 99.4 2.5E-13 8.6E-18 122.1 8.6 77 134-211 8-88 (103)
277 2ki2_A SS-DNA binding protein 99.4 6.1E-14 2.1E-18 121.5 4.4 76 53-129 2-82 (90)
278 1x4b_A Heterogeneous nuclear r 99.4 1.7E-13 5.7E-18 124.6 7.4 81 49-130 24-109 (116)
279 1sjr_A Polypyrimidine tract-bi 99.4 2.7E-13 9.3E-18 131.9 9.2 77 137-213 46-125 (164)
280 2krb_A Eukaryotic translation 99.4 1.4E-13 4.9E-18 117.2 6.5 69 138-206 2-80 (81)
281 2mss_A Protein (musashi1); RNA 99.4 1.4E-13 4.9E-18 115.1 6.3 70 54-124 1-75 (75)
282 1wg1_A KIAA1579 protein, homol 99.4 1.4E-13 4.8E-18 119.2 6.4 76 50-127 3-78 (88)
283 2dgw_A Probable RNA-binding pr 99.4 5.1E-13 1.7E-17 116.0 9.9 77 135-213 8-88 (91)
284 1fj7_A Nucleolin RBD1, protein 99.4 1E-13 3.5E-18 122.8 5.5 80 49-129 14-97 (101)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 7E-13 2.4E-17 123.6 11.4 76 134-209 60-140 (140)
286 1fj7_A Nucleolin RBD1, protein 99.4 1.1E-13 3.6E-18 122.7 5.5 81 135-216 15-99 (101)
287 1x5o_A RNA binding motif, sing 99.4 6.1E-13 2.1E-17 120.3 10.7 78 135-212 23-112 (114)
288 2m2b_A RNA-binding protein 10; 99.4 1.2E-13 4.1E-18 128.7 6.1 79 134-213 20-109 (131)
289 2e5i_A Heterogeneous nuclear r 99.4 4.6E-13 1.6E-17 124.7 9.9 74 139-213 27-103 (124)
290 1sjr_A Polypyrimidine tract-bi 99.4 7.3E-13 2.5E-17 128.9 11.7 79 51-129 45-126 (164)
291 2cqg_A TDP-43, TAR DNA-binding 99.4 8.8E-13 3E-17 117.1 11.3 79 134-214 12-95 (103)
292 2ki2_A SS-DNA binding protein 99.4 8.9E-14 3E-18 120.5 4.5 76 138-214 2-82 (90)
293 2e5g_A U6 snRNA-specific termi 99.4 9.6E-13 3.3E-17 115.2 11.1 79 50-129 6-84 (94)
294 2diu_A KIAA0430 protein; struc 99.4 9E-13 3.1E-17 116.6 10.9 75 51-130 7-87 (96)
295 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.2E-13 4.2E-18 115.8 5.0 71 53-124 1-76 (77)
296 2cq2_A Hypothetical protein LO 99.4 4.7E-13 1.6E-17 122.9 9.0 79 48-127 21-106 (114)
297 1rk8_A CG8781-PA, CG8781-PA pr 99.4 5E-13 1.7E-17 129.3 9.5 84 46-129 66-154 (165)
298 1wel_A RNA-binding protein 12; 99.4 1.9E-13 6.4E-18 126.1 6.0 77 49-126 22-103 (124)
299 1wg5_A Heterogeneous nuclear r 99.4 6E-13 2E-17 119.1 9.1 78 135-213 13-95 (104)
300 2jwn_A Embryonic polyadenylate 99.4 5.6E-13 1.9E-17 122.4 9.0 77 51-128 35-116 (124)
301 3egn_A RNA-binding protein 40; 99.4 5.7E-13 1.9E-17 125.6 9.2 80 49-128 42-131 (143)
302 2e5g_A U6 snRNA-specific termi 99.4 7.5E-13 2.6E-17 115.9 9.1 78 136-214 7-84 (94)
303 3d2w_A TAR DNA-binding protein 99.4 1E-12 3.5E-17 114.7 9.8 77 135-215 9-87 (89)
304 3zzy_A Polypyrimidine tract-bi 99.4 7.9E-13 2.7E-17 124.1 9.8 78 52-129 28-108 (130)
305 3beg_B Splicing factor, argini 99.4 6.6E-13 2.2E-17 121.2 8.8 75 136-212 15-94 (115)
306 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.5E-13 8.7E-18 113.8 5.6 71 138-209 1-76 (77)
307 2cpy_A RNA-binding protein 12; 99.4 3.3E-13 1.1E-17 122.8 6.8 80 135-215 13-97 (114)
308 2cpy_A RNA-binding protein 12; 99.4 2.6E-13 9E-18 123.4 5.8 78 49-127 12-94 (114)
309 3egn_A RNA-binding protein 40; 99.4 9.9E-13 3.4E-17 124.0 9.9 82 135-216 43-134 (143)
310 2diu_A KIAA0430 protein; struc 99.4 1E-12 3.5E-17 116.2 8.9 71 139-214 11-86 (96)
311 2cq2_A Hypothetical protein LO 99.4 9E-13 3.1E-17 121.0 8.9 76 136-212 24-106 (114)
312 1wez_A HnRNP H', FTP-3, hetero 99.4 7.7E-13 2.6E-17 118.4 8.2 78 49-128 12-93 (102)
313 2e5i_A Heterogeneous nuclear r 99.4 4.8E-12 1.6E-16 117.9 13.7 78 51-129 22-104 (124)
314 2xs2_A Deleted in azoospermia- 99.4 2E-13 6.9E-18 121.1 4.1 80 48-129 5-88 (102)
315 2lcw_A RNA-binding protein FUS 99.1 4.7E-14 1.6E-18 128.4 0.0 82 49-130 4-98 (116)
316 2db1_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 123.6 5.7 76 50-126 15-97 (118)
317 2hgl_A HNRPF protein, heteroge 99.4 4.7E-13 1.6E-17 126.5 6.7 78 135-213 42-126 (136)
318 3beg_B Splicing factor, argini 99.4 1.4E-12 4.6E-17 119.1 9.2 75 50-126 14-93 (115)
319 3d2w_A TAR DNA-binding protein 99.4 1.3E-12 4.6E-17 113.9 8.6 76 49-128 8-85 (89)
320 2db1_A Heterogeneous nuclear r 99.4 6E-13 2.1E-17 122.1 6.6 77 135-212 15-98 (118)
321 1iqt_A AUF1, heterogeneous nuc 99.4 4.1E-13 1.4E-17 112.1 4.9 70 54-124 1-75 (75)
322 1wf0_A TDP-43, TAR DNA-binding 99.4 6.1E-13 2.1E-17 114.9 6.1 79 50-130 3-81 (88)
323 2hzc_A Splicing factor U2AF 65 99.3 1.4E-12 4.9E-17 111.8 8.0 72 50-123 4-86 (87)
324 2lcw_A RNA-binding protein FUS 99.0 8.9E-14 3E-18 126.5 0.0 81 135-215 5-98 (116)
325 1wez_A HnRNP H', FTP-3, hetero 99.3 1.1E-12 3.9E-17 117.3 7.2 77 135-213 13-93 (102)
326 1wel_A RNA-binding protein 12; 99.3 4.1E-13 1.4E-17 123.8 4.3 77 136-213 24-105 (124)
327 2lmi_A GRSF-1, G-rich sequence 99.3 6.8E-13 2.3E-17 119.3 5.7 76 50-126 9-91 (107)
328 2dnn_A RNA-binding protein 12; 99.3 1.8E-12 6.1E-17 117.9 8.4 74 136-211 15-92 (109)
329 1wf0_A TDP-43, TAR DNA-binding 99.3 8.2E-13 2.8E-17 114.1 5.6 78 136-215 4-81 (88)
330 2f3j_A RNA and export factor b 99.3 2E-12 6.7E-17 127.3 9.0 78 50-127 86-167 (177)
331 3q2s_C Cleavage and polyadenyl 99.3 7.7E-13 2.6E-17 135.4 6.3 78 136-213 67-151 (229)
332 2lmi_A GRSF-1, G-rich sequence 99.3 7.1E-13 2.4E-17 119.2 5.3 78 135-213 9-93 (107)
333 3q2s_C Cleavage and polyadenyl 99.3 1.1E-12 3.6E-17 134.3 7.2 76 51-126 67-149 (229)
334 2hgl_A HNRPF protein, heteroge 99.3 7.6E-13 2.6E-17 125.1 5.6 77 49-126 41-124 (136)
335 1iqt_A AUF1, heterogeneous nuc 99.3 5.8E-13 2E-17 111.2 4.2 70 139-209 1-75 (75)
336 2hgn_A Heterogeneous nuclear r 99.3 4.9E-13 1.7E-17 126.9 4.1 120 90-214 2-125 (139)
337 2bz2_A Negative elongation fac 99.3 2.5E-12 8.4E-17 118.8 8.7 78 135-215 37-114 (121)
338 2bz2_A Negative elongation fac 99.3 2.6E-12 8.7E-17 118.7 8.8 78 49-129 36-113 (121)
339 2voo_A Lupus LA protein; RNA-b 99.3 4.4E-12 1.5E-16 126.4 11.1 115 98-213 63-188 (193)
340 2hzc_A Splicing factor U2AF 65 99.3 3.6E-12 1.2E-16 109.3 8.6 71 136-208 5-86 (87)
341 3u1l_A PRE-mRNA-splicing facto 99.3 5.3E-12 1.8E-16 130.1 11.0 105 110-215 107-232 (240)
342 2dnn_A RNA-binding protein 12; 99.3 1.5E-12 5.2E-17 118.4 5.9 74 51-126 15-92 (109)
343 2hgn_A Heterogeneous nuclear r 99.3 1.3E-12 4.6E-17 123.9 5.5 79 48-128 42-124 (139)
344 2xs2_A Deleted in azoospermia- 99.3 1.5E-12 5.1E-17 115.4 5.4 78 135-214 7-88 (102)
345 2f3j_A RNA and export factor b 99.3 5.6E-12 1.9E-16 124.0 9.6 78 136-213 87-168 (177)
346 2hgm_A HNRPF protein, heteroge 99.3 3.9E-12 1.3E-16 118.7 7.9 76 49-126 39-120 (126)
347 2dit_A HIV TAT specific factor 99.3 1.7E-11 5.8E-16 111.1 11.2 83 48-130 11-105 (112)
348 2dnl_A Cytoplasmic polyadenyla 99.3 7.3E-12 2.5E-16 113.8 8.3 71 50-123 6-84 (114)
349 3u1l_A PRE-mRNA-splicing facto 99.3 8.2E-12 2.8E-16 128.7 9.1 81 49-130 131-232 (240)
350 2dha_A FLJ20171 protein; RRM d 99.3 2.4E-12 8.1E-17 119.7 4.5 76 136-212 22-105 (123)
351 2dha_A FLJ20171 protein; RRM d 99.3 2.5E-12 8.7E-17 119.4 4.6 75 50-125 21-103 (123)
352 2dit_A HIV TAT specific factor 99.2 3.1E-11 1.1E-15 109.4 11.4 80 135-214 13-104 (112)
353 2pe8_A Splicing factor 45; RRM 99.2 2.8E-11 9.5E-16 109.2 10.4 76 136-211 7-93 (105)
354 2hgm_A HNRPF protein, heteroge 99.2 6.4E-12 2.2E-16 117.3 5.8 76 135-212 40-121 (126)
355 3pgw_S U1-70K; protein-RNA com 99.2 1.8E-11 6E-16 136.7 10.3 80 49-128 99-183 (437)
356 2dnl_A Cytoplasmic polyadenyla 99.2 2.4E-11 8.1E-16 110.4 8.8 77 136-215 7-91 (114)
357 2pe8_A Splicing factor 45; RRM 99.2 3.1E-11 1.1E-15 108.9 9.0 78 49-126 5-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.2 4.6E-11 1.6E-15 111.5 7.9 77 138-214 3-98 (136)
359 3v4m_A Splicing factor U2AF 65 99.1 1.8E-10 6.2E-15 103.8 9.9 76 136-211 4-96 (105)
360 2voo_A Lupus LA protein; RNA-b 99.1 8.9E-11 3E-15 116.9 8.4 75 51-126 108-186 (193)
361 3v4m_A Splicing factor U2AF 65 99.1 1.9E-10 6.4E-15 103.8 8.2 78 49-126 2-96 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.2E-10 1.1E-14 101.5 9.7 66 147-214 27-92 (100)
363 2j8a_A Histone-lysine N-methyl 99.1 5.5E-11 1.9E-15 111.0 4.5 72 53-124 3-93 (136)
364 2d9o_A DNAJ (HSP40) homolog, s 99.1 9.8E-10 3.4E-14 98.4 12.1 76 52-129 10-92 (100)
365 1jmt_A Splicing factor U2AF 35 99.1 1.2E-10 4E-15 104.9 5.9 68 142-209 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.0 4.5E-10 1.5E-14 121.5 9.0 76 48-124 14-96 (345)
367 3tht_A Alkylated DNA repair pr 99.0 6.4E-10 2.2E-14 120.2 9.7 75 135-210 16-97 (345)
368 3ue2_A Poly(U)-binding-splicin 99.0 9E-10 3.1E-14 101.5 9.0 76 136-211 19-108 (118)
369 3s6e_A RNA-binding protein 39; 99.0 1.5E-09 5E-14 99.5 9.4 76 136-211 6-92 (114)
370 1jmt_A Splicing factor U2AF 35 99.0 2.4E-10 8.3E-15 102.8 3.8 68 57-124 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 98.9 1.8E-09 6.1E-14 99.5 8.0 76 51-126 19-108 (118)
372 3s6e_A RNA-binding protein 39; 98.9 3.8E-09 1.3E-13 96.8 8.4 76 50-125 5-91 (114)
373 1uw4_A UPF3X; nonsense mediate 98.9 6.8E-09 2.3E-13 91.3 8.9 84 571-656 2-88 (91)
374 2dnr_A Synaptojanin-1; RRM dom 98.7 3.3E-08 1.1E-12 86.7 9.1 75 135-213 5-87 (91)
375 2l08_A Regulator of nonsense t 98.7 7.7E-09 2.6E-13 91.7 4.1 84 571-656 10-96 (97)
376 1owx_A Lupus LA protein, SS-B, 98.7 7.8E-08 2.7E-12 89.0 10.2 87 136-224 17-107 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.5 1.2E-07 4E-12 83.7 6.1 73 135-211 13-94 (95)
378 1owx_A Lupus LA protein, SS-B, 98.5 5E-07 1.7E-11 83.6 9.7 74 49-123 15-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.4 6.2E-07 2.1E-11 78.7 7.2 72 51-126 6-85 (91)
380 3dxb_A Thioredoxin N-terminall 98.4 4.9E-07 1.7E-11 90.9 7.6 63 149-211 141-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.1 3.2E-06 1.1E-10 84.9 7.9 74 52-125 124-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.1 6E-06 2.1E-10 74.5 8.3 73 136-209 20-97 (117)
383 1ufw_A Synaptojanin 2; RNP dom 98.1 2.8E-06 9.5E-11 74.9 5.1 72 50-125 13-93 (95)
384 2dhx_A Poly (ADP-ribose) polym 97.6 0.00035 1.2E-08 62.4 10.1 88 51-150 7-99 (104)
385 2l9w_A U4/U6 snRNA-associated- 97.6 9.6E-05 3.3E-09 66.7 6.4 71 51-122 20-95 (117)
386 2dhx_A Poly (ADP-ribose) polym 97.4 0.00037 1.3E-08 62.2 8.2 82 137-222 8-94 (104)
387 1wey_A Calcipressin 1; structu 97.2 0.00059 2E-08 61.1 6.6 75 138-213 6-85 (104)
388 1wey_A Calcipressin 1; structu 96.8 0.0013 4.4E-08 58.9 5.2 75 52-127 5-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.5 0.0099 3.4E-07 54.5 9.4 74 135-211 22-96 (119)
390 1uw4_A UPF3X; nonsense mediate 96.2 0.0087 3E-07 52.4 6.9 65 53-117 2-73 (91)
391 1whv_A Poly(A)-specific ribonu 95.6 0.036 1.2E-06 49.0 7.9 55 52-110 16-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 95.0 0.057 1.9E-06 49.5 7.6 71 51-124 23-94 (119)
393 1whv_A Poly(A)-specific ribonu 94.6 0.076 2.6E-06 47.0 7.0 55 137-195 16-70 (100)
394 3ctr_A Poly(A)-specific ribonu 94.4 0.037 1.3E-06 49.1 4.5 54 53-110 7-60 (101)
395 3p3d_A Nucleoporin 53; structu 94.2 0.055 1.9E-06 50.4 5.5 72 137-210 7-97 (132)
396 2l08_A Regulator of nonsense t 94.2 0.043 1.5E-06 48.6 4.5 68 50-117 7-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 93.5 0.028 9.5E-07 62.9 2.5 57 50-107 51-107 (464)
398 3pq1_A Poly(A) RNA polymerase; 92.8 0.05 1.7E-06 60.8 3.2 55 137-192 53-107 (464)
399 3ctr_A Poly(A)-specific ribonu 92.8 0.085 2.9E-06 46.8 4.0 53 139-195 8-60 (101)
400 3p3d_A Nucleoporin 53; structu 91.1 0.15 5.3E-06 47.3 3.9 72 51-124 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 75.8 5.8 0.0002 44.7 8.4 55 52-110 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 66.9 12 0.00042 42.0 8.4 56 137-196 440-495 (507)
403 4eyt_A Telomerase associated p 27.5 3E+02 0.01 23.7 9.1 79 137-218 12-97 (129)
404 2g0c_A ATP-dependent RNA helic 21.7 77 0.0026 25.5 3.7 59 148-210 12-75 (76)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2.4e-30 Score=260.80 Aligned_cols=166 Identities=19% Similarity=0.351 Sum_probs=146.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..|.+||||+|||.++||++|+++|++||+|.+|+. +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 347899999999999999999999999999999873 567899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 124 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 124 s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
+..... .......+|||+|||+++++++|+++|++||.|..|++ .+.++|||||+|.+.++|++|++.|||..|+
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 765432 12234568999999999999999999999999999875 3446899999999999999999999999999
Q ss_pred CceEEEEecCCCchhh
Q 004788 201 GKRIKLEPSRPGGARR 216 (730)
Q Consensus 201 Gr~IkV~~A~pk~~r~ 216 (730)
|++|+|.+++++..+.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999876544
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.7e-29 Score=236.93 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=142.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
|+|||+|||.++++++|+++|++||+|..|.. .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 79999999999999999999999999999873 45688999999999999999999999999999999999987654
Q ss_pred CCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 004788 129 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 203 (730)
Q Consensus 129 ~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~ 203 (730)
.. ......+|+|+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..++|+.
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 3345679999999999999999999999999999865 3566899999999999999999999999999999
Q ss_pred EEEEecCC
Q 004788 204 IKLEPSRP 211 (730)
Q Consensus 204 IkV~~A~p 211 (730)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=8.9e-29 Score=258.40 Aligned_cols=201 Identities=17% Similarity=0.276 Sum_probs=175.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
.++++|||+|||.++++++|+++|+.|| |..+.. ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3579999999999999999999999999 998886 6789999999999999999999999999999999999854
Q ss_pred CCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 130 PSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 130 ~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
...+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2458999999999999999999999999999864 45568999999999999999999999999999999
Q ss_pred EEEecCCCch-------hhhhhhhchhhh-hHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc-CCCCCCccccC
Q 004788 205 KLEPSRPGGA-------RRNLMQQLNQEL-EQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLS 275 (730)
Q Consensus 205 kV~~A~pk~~-------r~~~~~ql~~~~-~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~-~g~S~gfGfvs 275 (730)
+|.++.++.. +..++.++...+ +++++..+ |..||.+....++.+ .++++|+|||.
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~---------------f~~~G~i~~v~i~~~~~g~~~g~afV~ 232 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRA---------------LSAVHSPTFCQLACGQDGQLKGFAVLE 232 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHH---------------TCSSSCCSEEEEEECSSCCEEEEEEEE
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHH---------------hhCCCCeEEEEEEECCCCCcccEEEEE
Confidence 9999987653 234677787775 77888877 455666766666655 78899999998
Q ss_pred CC
Q 004788 276 PI 277 (730)
Q Consensus 276 p~ 277 (730)
+.
T Consensus 233 f~ 234 (284)
T 3smz_A 233 YE 234 (284)
T ss_dssp CS
T ss_pred eC
Confidence 75
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.1e-28 Score=234.25 Aligned_cols=155 Identities=23% Similarity=0.432 Sum_probs=141.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
++++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999972 55688999999999999999999999999999999999987
Q ss_pred CCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
++.. .....+|+|+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 234679999999999999999999999999999875 4456799999999999999999999999998
Q ss_pred C--ceEEEEec
Q 004788 201 G--KRIKLEPS 209 (730)
Q Consensus 201 G--r~IkV~~A 209 (730)
| ++|+|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=3.2e-28 Score=231.95 Aligned_cols=155 Identities=25% Similarity=0.435 Sum_probs=140.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
++++|||+|||+++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3699999999999999999999999999999873 56788999999999999999999999999999999999987
Q ss_pred CCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
+... .....+|+|+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6532 344678999999999999999999999999999876 3456899999999999999999999999999
Q ss_pred Cce--EEEEec
Q 004788 201 GKR--IKLEPS 209 (730)
Q Consensus 201 Gr~--IkV~~A 209 (730)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 965 888886
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.6e-28 Score=242.29 Aligned_cols=165 Identities=20% Similarity=0.374 Sum_probs=144.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35789999999999999999999999999999984 5668999999999999999999999999999999999887
Q ss_pred CCCCCCC-------CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHH
Q 004788 125 IPKDNPS-------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALR 192 (730)
Q Consensus 125 ~pk~~~~-------~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~ 192 (730)
....... .......+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6543211 01234579999999999999999999999999999976 34568999999999999999999
Q ss_pred HhCCceeCCceEEEEecCCCch
Q 004788 193 ALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 193 ~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
.|||..|+|+.|+|.+++++..
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSS
T ss_pred HccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999987643
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=8.1e-28 Score=244.91 Aligned_cols=164 Identities=24% Similarity=0.332 Sum_probs=146.9
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 49 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 49 e~psrtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..++++|||+|||. ++++++|+++|++||.|..|......+|||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 34689999999999 99999999999999999999976666899999999999999999999999999999999998754
Q ss_pred CCCCCC-------------------------------ccCCceeEEecCCCcchHHHHHHHHcccC-CeEEEEecCCCcc
Q 004788 128 DNPSEK-------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRETPHKRH 175 (730)
Q Consensus 128 ~~~~~~-------------------------------~~~~~tL~V~NLp~svTeedLreiFs~fG-~I~~Vritg~skG 175 (730)
.....+ .....+|||+|||.++++++|+++|++|| .|..|++..+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211100 11257899999999999999999999999 9999999767789
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEecCCC
Q 004788 176 HKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 212 (730)
Q Consensus 176 ~AFVeF~d~e~A~kAL~~LnG~~I~-Gr~IkV~~A~pk 212 (730)
+|||+|.+.++|.+|++.|+|..+. |+.|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999874
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=4.5e-28 Score=238.00 Aligned_cols=169 Identities=20% Similarity=0.378 Sum_probs=140.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 334557899999999999999999999999999998873 466899999999999999999985 89999999999
Q ss_pred eeecCCCCCCCC--CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHH
Q 004788 121 IHFSIPKDNPSE--KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 121 V~~s~pk~~~~~--~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
|.++.++..... ......+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999876543221 2234579999999999999999999999999999975 456789999999999999999985
Q ss_pred hCCceeCCceEEEEecCCCchhh
Q 004788 194 LNRSDINGKRIKLEPSRPGGARR 216 (730)
Q Consensus 194 LnG~~I~Gr~IkV~~A~pk~~r~ 216 (730)
++..|+|+.|+|.++.++....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999876554
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.1e-27 Score=249.80 Aligned_cols=163 Identities=23% Similarity=0.436 Sum_probs=145.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~----~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
...++++|||+|||.++++++|+ ++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34578999999999999999977 89999999999984 6678999999999999999999999999999999999
Q ss_pred eecCCCCCC-----------------------------------------------------------------------
Q 004788 122 HFSIPKDNP----------------------------------------------------------------------- 130 (730)
Q Consensus 122 ~~s~pk~~~----------------------------------------------------------------------- 130 (730)
.|+..+...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654320
Q ss_pred ------------------------------------CCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCc
Q 004788 131 ------------------------------------SEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKR 174 (730)
Q Consensus 131 ------------------------------------~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~sk 174 (730)
.......++|||+|||.++++++|+++|++||.|.+|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 01112346799999999999999999999999999999876677
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEecC
Q 004788 175 HHKFIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSR 210 (730)
Q Consensus 175 G~AFVeF~d~e~A~kAL~~LnG~~I~-Gr~IkV~~A~ 210 (730)
|||||+|.+.++|.+|++.|||..|. |+.|+|+|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999986
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.2e-28 Score=238.52 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=144.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEE----EeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V----~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
...+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 34568999999999999999999999999864431 1466789999999999999999995 999999999999999
Q ss_pred cCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 004788 124 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR 203 (730)
Q Consensus 124 s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~ 203 (730)
+.++... ......+|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 8765432 33456799999999999999999999999999998667788999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004788 204 IKLEPSRPG 212 (730)
Q Consensus 204 IkV~~A~pk 212 (730)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999876
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=6.8e-28 Score=252.68 Aligned_cols=205 Identities=18% Similarity=0.198 Sum_probs=167.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...+.+.++|||+|||.++++++|+++|+.||+|..|.. ...++|||||+|.+.++|++|++ +++..+.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 345667899999999999999999999999999999873 22358999999999999999995 99999999999999
Q ss_pred ecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccC-CeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCc
Q 004788 123 FSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRS 197 (730)
Q Consensus 123 ~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG-~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~ 197 (730)
++ ...+|||+|||.++++++|+++|+.|| .|..|++. +.++|||||+|.+.++|.+|++.|+|.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 256899999999999999999999999 99999763 356899999999999999999999999
Q ss_pred eeCCceEEEEecCCCchh-----------hhhhhhchhh-hhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc-
Q 004788 198 DINGKRIKLEPSRPGGAR-----------RNLMQQLNQE-LEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA- 264 (730)
Q Consensus 198 ~I~Gr~IkV~~A~pk~~r-----------~~~~~ql~~~-~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~- 264 (730)
.+.|+.|+|.++.+.... ..++.++... ++++++..++. .||.+...+++.+
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~---------------~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE---------------GFGSIEKINIPAGQ 247 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG---------------GGSCEEEEECCSCC
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh---------------ccCCeeEEEEEecC
Confidence 999999999999876532 2356677778 88888887754 4555666666655
Q ss_pred --CCCCCCccccCCC
Q 004788 265 --FSKSPGLGTLSPI 277 (730)
Q Consensus 265 --~g~S~gfGfvsp~ 277 (730)
+++++||+||.+.
T Consensus 248 ~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFE 262 (292)
T ss_dssp C---CCCEEEEEEES
T ss_pred CcCCCCceEEEEEeC
Confidence 3899999999765
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.5e-27 Score=229.48 Aligned_cols=154 Identities=17% Similarity=0.341 Sum_probs=139.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc----C-------CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~f----G-------~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
+++++|||+|||.++++++|+++|++| | .|..+.. ++++|||||+|.+.++|++|+ .+++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357999999999999999999999999 7 7888764 467999999999999999999 79999999999
Q ss_pred ceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHH
Q 004788 119 LDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 119 L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
|.|.++...... ....+|+|+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999987654322 33678999999999999999999999999999976 455689999999999999999999
Q ss_pred hCCceeCCceEEEEec
Q 004788 194 LNRSDINGKRIKLEPS 209 (730)
Q Consensus 194 LnG~~I~Gr~IkV~~A 209 (730)
|||..++|++|+|++|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999997
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1e-27 Score=237.14 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=145.3
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 51 PSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 51 psrtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
.+++|||+|||+ ++++++|+++|++||.|..|......+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999996656689999999999999999999999999999999999865421
Q ss_pred CCCC-------------------------------ccCCceeEEecCCCcchHHHHHHHHcccC-CeEEEEecCCCccEE
Q 004788 130 PSEK-------------------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRETPHKRHHK 177 (730)
Q Consensus 130 ~~~~-------------------------------~~~~~tL~V~NLp~svTeedLreiFs~fG-~I~~Vritg~skG~A 177 (730)
...+ .....+|+|+|||.++++++|+++|++|| .|..|++....+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 12256899999999999999999999999 999999977778999
Q ss_pred EEEEcCHHHHHHHHHHhCCceeC-CceEEEEecCCC
Q 004788 178 FIEFYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 212 (730)
Q Consensus 178 FVeF~d~e~A~kAL~~LnG~~I~-Gr~IkV~~A~pk 212 (730)
||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=5.4e-28 Score=231.47 Aligned_cols=155 Identities=19% Similarity=0.410 Sum_probs=139.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5799999999999999999999999999999983 567899999999999999999984 678899999999876
Q ss_pred CCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
++. .....++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++ +++..++
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 542 2234668999999999999999999999999999975 45678999999999999999998 8999999
Q ss_pred CceEEEEecCCC
Q 004788 201 GKRIKLEPSRPG 212 (730)
Q Consensus 201 Gr~IkV~~A~pk 212 (730)
|++|+|.++.|+
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=2.9e-27 Score=227.39 Aligned_cols=157 Identities=21% Similarity=0.406 Sum_probs=137.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CC--CcccEEEEEEcCHHHHHHHHHHhcccccC---CCcce
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 120 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~--ksrG~AFV~F~d~e~A~kAl~~Lng~~l~---Gr~L~ 120 (730)
++++|||+|||+++++++|+++|++||+|..|+. .+ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4799999999999999999999999999999872 22 68999999999999999999999998876 57777
Q ss_pred eeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCC
Q 004788 121 IHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNR 196 (730)
Q Consensus 121 V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG 196 (730)
+.++.+... .....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655433 2345679999999999999999999999999999875 345689999999999999999999999
Q ss_pred ceeC---CceEEEEecC
Q 004788 197 SDIN---GKRIKLEPSR 210 (730)
Q Consensus 197 ~~I~---Gr~IkV~~A~ 210 (730)
..+. ++.|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 9776 4999999973
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.5e-27 Score=233.00 Aligned_cols=162 Identities=17% Similarity=0.322 Sum_probs=142.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcc----C-------CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcc
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 119 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~f----G-------~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L 119 (730)
.+++|||+|||.++++++|+++|++| | .|..+.. ++++|||||+|.+.++|++|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 57999999999999999999999999 5 6777764 577999999999999999999 799999999999
Q ss_pred eeeecCCCCCCC----------------CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEE
Q 004788 120 DIHFSIPKDNPS----------------EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKF 178 (730)
Q Consensus 120 ~V~~s~pk~~~~----------------~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AF 178 (730)
.|.++.+..... .......+|||+|||.++++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999886543211 01134579999999999999999999999999999975 445589999
Q ss_pred EEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 179 IEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 179 VeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
|+|.+.++|.+|++.|||..|+|+.|+|++++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998754
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=4.8e-27 Score=236.75 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=136.6
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 51 PSRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 51 psrtLfV~NLP-~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
++++|||+||| .++++++|+++|++||.|.+|+.....+|||||+|.+.++|++|++.|+|..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57999999999 89999999999999999999997766799999999999999999999999999999999999864321
Q ss_pred CCC------------C---------------------ccCCceeEEecCCCcchHHHHHHHHcccCCe--EEEEecC---
Q 004788 130 PSE------------K---------------------DVNQGTLVVFNLDASVSNDDLRQIFGAYGEV--KEIRETP--- 171 (730)
Q Consensus 130 ~~~------------~---------------------~~~~~tL~V~NLp~svTeedLreiFs~fG~I--~~Vritg--- 171 (730)
... + .....+|||+|||+++++++|+++|++||.| ..+++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123579999999999999999999999998 8887633
Q ss_pred CCccEEEEEEcCHHHHHHHHHHhCCceeCCc----eEEEEec
Q 004788 172 HKRHHKFIEFYDVRAAEAALRALNRSDINGK----RIKLEPS 209 (730)
Q Consensus 172 ~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr----~IkV~~A 209 (730)
.++|+|||+|.+.++|.+||..|||.+|.|+ .+.|.++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999886 4555543
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.6e-26 Score=241.22 Aligned_cols=170 Identities=18% Similarity=0.281 Sum_probs=151.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
+.++|||+|||.++++++|+++|++||.|..+.. +++++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 5689999999999999999999999999998862 56689999999999999999999999999999999999998
Q ss_pred CCCCCCCCccCCceeEEecCCCcc-hHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASV-SNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~sv-TeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
++... .......+|||+|||.++ ++++|+++|+.||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..|+
T Consensus 174 ~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 76543 233456799999999995 99999999999999998875 4456899999999999999999999999999
Q ss_pred CceEEEEecCCCchhhhhhhh
Q 004788 201 GKRIKLEPSRPGGARRNLMQQ 221 (730)
Q Consensus 201 Gr~IkV~~A~pk~~r~~~~~q 221 (730)
|+.|+|.|+.++..++..+.+
T Consensus 253 g~~l~v~~a~~~~~~~~~~~~ 273 (284)
T 3smz_A 253 GSHLRVSFCAPGPPGRSMLAA 273 (284)
T ss_dssp TEECEEEECCSSSCHHHHHHH
T ss_pred CeEEEEEEecCCCcccchhhh
Confidence 999999999999887654443
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1e-25 Score=236.09 Aligned_cols=161 Identities=19% Similarity=0.299 Sum_probs=141.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC-CEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG-~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..++|||+|||.++++++|+++|++|| .|..|.. .++++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 579999999999999999999999999 9999873 34689999999999999999999999999999999999998
Q ss_pred CCCCCCC---CccCCceeEEecCCCc-chHHHHHHHHcccCCeEEEEec------CCCccEEEEEEcCHHHHHHHHHHhC
Q 004788 126 PKDNPSE---KDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALN 195 (730)
Q Consensus 126 pk~~~~~---~~~~~~tL~V~NLp~s-vTeedLreiFs~fG~I~~Vrit------g~skG~AFVeF~d~e~A~kAL~~Ln 195 (730)
++..... ......+|||+|||.+ +++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 7654322 2334679999999999 9999999999999999999762 667899999999999999999 999
Q ss_pred CceeCCceEEEEecCCC
Q 004788 196 RSDINGKRIKLEPSRPG 212 (730)
Q Consensus 196 G~~I~Gr~IkV~~A~pk 212 (730)
|..|+|+.|+|.|++++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999876
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=3.6e-25 Score=229.82 Aligned_cols=156 Identities=26% Similarity=0.383 Sum_probs=140.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
..+.++|||+|||.++|+++|+++|+.||.|..|.. .+.+|||||+|.+.++|++|+..|+|..+.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 346789999999999999999999999999999986 36799999999999999999999999999999999999864
Q ss_pred CCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhC-CceeC---
Q 004788 129 NPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALN-RSDIN--- 200 (730)
Q Consensus 129 ~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~Ln-G~~I~--- 200 (730)
..+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|+ +..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 458999999999999999999999999999865 45678999999999999999999995 44554
Q ss_pred CceEEEEecCCCchh
Q 004788 201 GKRIKLEPSRPGGAR 215 (730)
Q Consensus 201 Gr~IkV~~A~pk~~r 215 (730)
++.|.|.++.+...+
T Consensus 168 ~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 168 PRPVIVEPMEQFDDE 182 (261)
T ss_dssp CCBCEEEECCCEESS
T ss_pred CceEEEeeccccCcc
Confidence 999999999876544
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.9e-19 Score=170.28 Aligned_cols=128 Identities=19% Similarity=0.240 Sum_probs=113.2
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHh-cccccCCCcceeeecCCCC------------CCCCCccCCceeEEecCCCcchH
Q 004788 85 ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSEKDVNQGTLVVFNLDASVSN 151 (730)
Q Consensus 85 ~~ksrG~AFV~F~d~e~A~kAl~~L-ng~~l~Gr~L~V~~s~pk~------------~~~~~~~~~~tL~V~NLp~svTe 151 (730)
..+.+|+++|+|.+.++|++|++.+ +|..+.| .+.+.++..+. .........++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3457899999999999999999999 9999999 99998876421 11223345679999999999999
Q ss_pred HHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 152 DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 152 edLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
++|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|.|+.|+|++++++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999877789999999999999999999999999999999999998763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.5e-18 Score=166.21 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=104.7
Q ss_pred eCCCcccEEEEEEcCHHHHHHHHHHhcccccCC-------CcceeeecCCCC--CCCCCccCCceeEEecCCCcchHHHH
Q 004788 84 TACKHRGFVMISYYDIRAARTAMRALQNKPLRR-------RKLDIHFSIPKD--NPSEKDVNQGTLVVFNLDASVSNDDL 154 (730)
Q Consensus 84 ~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G-------r~L~V~~s~pk~--~~~~~~~~~~tL~V~NLp~svTeedL 154 (730)
...+.+|||||+|.+.++|++|++.+++....+ ............ ..........+|||+|||+++++++|
T Consensus 8 n~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 87 (158)
T 2kn4_A 8 NGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTL 87 (158)
T ss_dssp ECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHH
T ss_pred cCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 445789999999999999999999887643322 222222221111 11122344679999999999999999
Q ss_pred HHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchh
Q 004788 155 RQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 215 (730)
Q Consensus 155 reiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r 215 (730)
+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|.+++++..+
T Consensus 88 ~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 88 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999975 4567899999999999999999999999999999999999876543
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=2.7e-18 Score=156.90 Aligned_cols=103 Identities=15% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE---eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~---~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
.+++|||+|||+++++++|+++|++||.|.+|+ ..+.++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999887 34557899999999999999999999999999999999998775
Q ss_pred CCCCC----CccCCceeEEecCCCcchHHH
Q 004788 128 DNPSE----KDVNQGTLVVFNLDASVSNDD 153 (730)
Q Consensus 128 ~~~~~----~~~~~~tL~V~NLp~svTeed 153 (730)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 43221 222345799999999999863
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=2.3e-16 Score=143.25 Aligned_cols=103 Identities=23% Similarity=0.391 Sum_probs=92.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..++++|||+|||.++++++|+++|++||.|..|.. .+..+|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 346899999999999999999999999999999884 566799999999999999999999999999999999999876
Q ss_pred CCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCC
Q 004788 127 KDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGE 163 (730)
Q Consensus 127 k~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~ 163 (730)
+... .+++...++++|+++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4322 467788999999999999985
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=137.51 Aligned_cols=75 Identities=29% Similarity=0.495 Sum_probs=70.5
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|+|++|+|+||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 458999999999999999999999999999975 466789999999999999999999999999999999999987
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=137.99 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4689999999999999999999999999999872 57789999999999999999999999999999999999987
Q ss_pred C
Q 004788 126 P 126 (730)
Q Consensus 126 p 126 (730)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=5.7e-16 Score=155.85 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=100.8
Q ss_pred CCceeEEecCC-CcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 136 NQGTLVVFNLD-ASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 136 ~~~tL~V~NLp-~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...+|||+||+ +++++++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..+.|+.|+|.+++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 35689999999 89999999999999999999999877899999999999999999999999999999999999864321
Q ss_pred h-----------------------------------------hhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCC
Q 004788 215 R-----------------------------------------RNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQF 253 (730)
Q Consensus 215 r-----------------------------------------~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~ 253 (730)
. ..++.++...+++++++.+ |.+|
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~---------------F~~~ 147 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEI---------------CDEL 147 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHH---------------HHHH
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHH---------------HHhc
Confidence 0 0123344455555555555 4455
Q ss_pred CCc--ccccccccCCCCCCccccCCC
Q 004788 254 GSP--VERNPLHAFSKSPGLGTLSPI 277 (730)
Q Consensus 254 Gsp--~~~~~~~~~g~S~gfGfvsp~ 277 (730)
|.+ ...+++.+.+.++|||||.+.
T Consensus 148 G~v~~~~v~~~~~~~~~~g~gfV~f~ 173 (205)
T 3tyt_A 148 GVKRPTSVKVFSGKSERSSSGLLEWD 173 (205)
T ss_dssp TCCCCSEEEECSCCSSSSEEEEEECS
T ss_pred CCcceEEEEEEcCCCCCceEEEEEeC
Confidence 655 566667666667799999875
No 28
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=3.9e-16 Score=146.92 Aligned_cols=121 Identities=23% Similarity=0.350 Sum_probs=77.5
Q ss_pred cEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe
Q 004788 90 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 169 (730)
Q Consensus 90 G~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri 169 (730)
-++|++|.|...+..|+..++|....|+. .+.+..+ .......++|||+|||.++++++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 46788999999999999999887766654 2233322 233445779999999999999999999999999999976
Q ss_pred -----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchh
Q 004788 170 -----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 215 (730)
Q Consensus 170 -----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r 215 (730)
++..+|||||+|.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 4567899999999999999999999999999999999999876544
No 29
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=5e-16 Score=156.09 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=109.9
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+|||+++|+++|+++|++||+|.+|++ ++.++|||||+|.+.++|++|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4579999999999999999999999999999975 45678999999999999999999999999999999999997
Q ss_pred CCchh------hhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCcccccccccCCCCCCccccCCC
Q 004788 211 PGGAR------RNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 277 (730)
Q Consensus 211 pk~~r------~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~~g~S~gfGfvsp~ 277 (730)
..... +.++.++...++++++..+ |..||.+...+++.+.+.++|||||.+.
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~---------------F~~~G~i~~~~i~~d~~~~~g~~fV~f~ 151 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDT---------------FSAFGNILSCKVVCDENGSKGYGFVHFE 151 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHH---------------HGGGSCEEEEEEEEETTEEEEEEEEEES
T ss_pred ccccccccccccceECCcccccHHHHHHHH---------------HhhcCCeEEEEeeccCCCCceEEEEEeC
Confidence 75432 3467788888999999887 4456677778888887889999999775
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=137.27 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=76.4
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+||++++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999975 46789999999999999999999999999999999999998
Q ss_pred CCchhhhhh
Q 004788 211 PGGARRNLM 219 (730)
Q Consensus 211 pk~~r~~~~ 219 (730)
.+..++.+.
T Consensus 85 ~~~~~~~~~ 93 (110)
T 3s8s_A 85 KGQQRMKYY 93 (110)
T ss_dssp TTHHHHHHH
T ss_pred CCcHHHHHH
Confidence 877665443
No 31
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=1.2e-15 Score=144.78 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=106.1
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999975 455679999999999999999999999999999999999987
Q ss_pred Cch----hhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 212 GGA----RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 212 k~~----r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
... ...++.++...++++++..++.++ |.+....++.+ +++++||+||.+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~---------------G~i~~~~i~~~~~~g~~~g~afV~f~ 138 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQY---------------GRIITSRILVDQVTGVSRGVGFIRFD 138 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGG---------------SCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhc---------------CCEeEEEEEecCCCCCccceEEEEeC
Confidence 654 334778888888899998885544 55555555544 6888999999764
No 32
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=2.2e-15 Score=143.61 Aligned_cols=126 Identities=23% Similarity=0.380 Sum_probs=106.0
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 568999999999999999999999999999975 345679999999999999999999999999999999999987
Q ss_pred Cch----hhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 212 GGA----RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 212 k~~----r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
+.. ...++.++...++++++..++. .||.+....++.+ +++++||+||.+.
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~---------------~~G~i~~~~i~~~~~~~~~~g~afV~f~ 139 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFG---------------KYGSIVQKNILRDKLTGRPRGVAFVRYN 139 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHT---------------SSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhh---------------cCCcEEEEEEEEcCCCCCcceEEEEEEC
Confidence 653 3346778888888999988754 4555555555554 6888999999764
No 33
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2e-15 Score=143.04 Aligned_cols=125 Identities=23% Similarity=0.296 Sum_probs=105.0
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 489999999999999999999999999999763 4567999999999999999999999999999999999997654
Q ss_pred h------hhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 214 A------RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 214 ~------r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
. ...++.++...++++++..++ ..||.+....++.+ ++.++|+|||.+.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f---------------~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 137 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAF---------------KDFPSYLSGHVMWDMQTGSSRGYGFVSFT 137 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHH---------------TTSTTEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHH---------------hccCCeeEEEEEecCCCCCcceEEEEEeC
Confidence 2 334777888888899988874 44566666666644 7889999999764
No 34
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=133.26 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=81.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSE 132 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~ 132 (730)
++|||+|||.++++++|+++|++||+|..|.....++|||||+|.+.++|++|++.|++..+.|++|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999985434899999999999999999999999999999999999987653322
Q ss_pred C------ccCCceeEEecCC
Q 004788 133 K------DVNQGTLVVFNLD 146 (730)
Q Consensus 133 ~------~~~~~tL~V~NLp 146 (730)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1125689999987
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=3.7e-15 Score=136.05 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=71.8
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
..+|||+|||+++++++|+++|++||.|.+|++ ...++|||||+|.+.++|++|++.|+|..|.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 468999999999999999999999999999875 33458999999999999999999999999999999999998876
Q ss_pred hhh
Q 004788 214 ARR 216 (730)
Q Consensus 214 ~r~ 216 (730)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 554
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.3e-15 Score=129.23 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.++++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999984 5678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004788 125 IPKDNP 130 (730)
Q Consensus 125 ~pk~~~ 130 (730)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 877654
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=135.24 Aligned_cols=78 Identities=18% Similarity=0.386 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
+.+.++|||+|||+++++++|+++|++||+|.+|.. +++++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999999999999999873 578999999999999999999999999999999999999
Q ss_pred cCC
Q 004788 124 SIP 126 (730)
Q Consensus 124 s~p 126 (730)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 854
No 38
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=132.81 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccc--cCCCcceeeecC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 125 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~--l~Gr~L~V~~s~ 125 (730)
...|+++|||+|||.++++++|+++|++||.|.+|... +.||||||+|.+.++|++|++.|++.. +.|++|+|.|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 44579999999999999999999999999999999854 478999999999999999999999986 789999999997
Q ss_pred CCC
Q 004788 126 PKD 128 (730)
Q Consensus 126 pk~ 128 (730)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 39
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=130.28 Aligned_cols=84 Identities=17% Similarity=0.306 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34557899999999999999999999999999999884 4557899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004788 125 IPKDNP 130 (730)
Q Consensus 125 ~pk~~~ 130 (730)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=129.20 Aligned_cols=84 Identities=15% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344557899999999999999999999999999999983 567899999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 004788 121 IHFSIPKDN 129 (730)
Q Consensus 121 V~~s~pk~~ 129 (730)
|.++.++..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987654
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=133.40 Aligned_cols=79 Identities=20% Similarity=0.395 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccC-CEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHh-cccccCCCcceeeec
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYG-DIRTLY-----TACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFS 124 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG-~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~L-ng~~l~Gr~L~V~~s 124 (730)
+++|||+|||+++||++|+++|++|| .|.+|+ .+++++|||||+|.+.++|++|++.+ ++..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 788886 35778999999999999999999987 466799999999999
Q ss_pred CCCCCC
Q 004788 125 IPKDNP 130 (730)
Q Consensus 125 ~pk~~~ 130 (730)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 42
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=3.1e-15 Score=146.34 Aligned_cols=128 Identities=16% Similarity=0.283 Sum_probs=105.2
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345679999999999999999999999999999875 355689999999999999999975 99999999999999
Q ss_pred cCCCch----------hhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCC
Q 004788 209 SRPGGA----------RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSP 276 (730)
Q Consensus 209 A~pk~~----------r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp 276 (730)
+.+... +..++.++...++++++..++ ..||.+....++.+ +++++||+||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F---------------~~~G~i~~v~i~~~~~~g~~~g~afV~F 153 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF---------------EQYGKIEVIEIMTDRGSGKKRGFAFVTF 153 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHH---------------TTTSCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH---------------hcCCCeEEEEEeecCCCCCccceEEEEE
Confidence 976542 234667778888888888774 45566666667665 788999999977
Q ss_pred C
Q 004788 277 I 277 (730)
Q Consensus 277 ~ 277 (730)
.
T Consensus 154 ~ 154 (196)
T 1l3k_A 154 D 154 (196)
T ss_dssp S
T ss_pred C
Confidence 5
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=128.86 Aligned_cols=85 Identities=18% Similarity=0.383 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.....+.++|||+|||.++++++|+++|++||.|..|.. +++.+|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 334557899999999999999999999999999998873 45789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 004788 123 FSIPKDNP 130 (730)
Q Consensus 123 ~s~pk~~~ 130 (730)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99876654
No 44
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=4.9e-15 Score=143.51 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=72.8
Q ss_pred EEEcCHHHHHHHHHHhcccccC--CCcceeeecCCCC----------------CCCCCccCCceeEEecCCCcchHHHHH
Q 004788 94 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD----------------NPSEKDVNQGTLVVFNLDASVSNDDLR 155 (730)
Q Consensus 94 V~F~d~e~A~kAl~~Lng~~l~--Gr~L~V~~s~pk~----------------~~~~~~~~~~tL~V~NLp~svTeedLr 155 (730)
.+|.+.++|+.|+..+++.... |+.+...+..... ..........+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887665 5555554421110 011122345689999999999999999
Q ss_pred HHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchhh
Q 004788 156 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 216 (730)
Q Consensus 156 eiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r~ 216 (730)
++|++||.|..|++ ++..+|||||+|.+.++|++||+.|||..|.|+.|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999976 34568999999999999999999999999999999999998776543
No 45
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2e-14 Score=129.74 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=74.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccc--ccCCCcceee
Q 004788 45 HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIH 122 (730)
Q Consensus 45 ~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~--~l~Gr~L~V~ 122 (730)
.+....++++|||+|||.++++++|+++|++||.|..|... +.||||||+|.+.++|++|++.|++. .+.|++|+|.
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34455678999999999999999999999999999999854 35899999999999999999999765 4899999999
Q ss_pred ecCCCCC
Q 004788 123 FSIPKDN 129 (730)
Q Consensus 123 ~s~pk~~ 129 (730)
|+.++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987654
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-14 Score=128.48 Aligned_cols=85 Identities=25% Similarity=0.452 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe------CCCcccEEEEEEcCHHHHHHHHHHh-cccccCCCc
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRK 118 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~------~~ksrG~AFV~F~d~e~A~kAl~~L-ng~~l~Gr~ 118 (730)
+..+.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.| ++..|.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 334557899999999999999999999999999999984 4557999999999999999999999 999999999
Q ss_pred ceeeecCCCCCC
Q 004788 119 LDIHFSIPKDNP 130 (730)
Q Consensus 119 L~V~~s~pk~~~ 130 (730)
|.|.++.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=128.54 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999873 46678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004788 123 FSIPKD 128 (730)
Q Consensus 123 ~s~pk~ 128 (730)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998754
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.8e-15 Score=129.83 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345567899999999999999999999999999999983 367899999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 004788 121 IHFSIPKDNP 130 (730)
Q Consensus 121 V~~s~pk~~~ 130 (730)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999865543
No 49
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=3.8e-15 Score=147.96 Aligned_cols=126 Identities=22% Similarity=0.352 Sum_probs=102.7
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|||+|||.++++++|+++|++||.|.+|++ ++..+|||||+|.+.++|.+|++.|++..|.|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 468999999999999999999999999999976 456799999999999999999999999999999999999877
Q ss_pred Cchhh---------------hhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCcccc
Q 004788 212 GGARR---------------NLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTL 274 (730)
Q Consensus 212 k~~r~---------------~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfv 274 (730)
..... .++.++...++++++..+ |..||.+....++.+ +++++||+||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~---------------f~~~G~v~~v~i~~~~~~g~~~g~afV 172 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV---------------FEAFGKIKSATLARDPTTGKHKGYGFI 172 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHH---------------HTTSSCEEEEEEEECTTTCCEEEEEEE
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHH---------------HhccCCeeEEEEEecCCCCCcCceEEE
Confidence 65332 244455556666666655 556677777777765 7889999999
Q ss_pred CCC
Q 004788 275 SPI 277 (730)
Q Consensus 275 sp~ 277 (730)
.+.
T Consensus 173 ~F~ 175 (216)
T 2qfj_A 173 EYE 175 (216)
T ss_dssp EES
T ss_pred Eec
Confidence 765
No 50
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=128.04 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=74.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999986 5567899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 51
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.5e-15 Score=132.29 Aligned_cols=82 Identities=26% Similarity=0.318 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcc--cccCCCcceeeecCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSIP 126 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng--~~l~Gr~L~V~~s~p 126 (730)
..+.++|||+|||++++|++|+++|++||+|.+|... +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 4468999999999999999999999999999999854 3489999999999999999998864 789999999999987
Q ss_pred CCCCC
Q 004788 127 KDNPS 131 (730)
Q Consensus 127 k~~~~ 131 (730)
+....
T Consensus 92 ~~~~~ 96 (105)
T 1sjq_A 92 KELKT 96 (105)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 65543
No 52
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.56 E-value=1.7e-14 Score=130.81 Aligned_cols=84 Identities=15% Similarity=0.364 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999999999999873 5667999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876544
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=132.01 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=69.6
Q ss_pred ceeEEecCCCcchHHHHHHHHcccC-CeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHh-CCceeCCceEEEEecC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSR 210 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG-~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~L-nG~~I~Gr~IkV~~A~ 210 (730)
++|||+|||.++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++|++.+ ++..++|++|+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7998865 4678999999999999999999987 4568999999999998
Q ss_pred CCch
Q 004788 211 PGGA 214 (730)
Q Consensus 211 pk~~ 214 (730)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-14 Score=127.22 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. ...++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999883 234699999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876544
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.6e-14 Score=125.49 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346799999999999999999999999999998873 56689999999999999999999999999999999999998
Q ss_pred CCCC
Q 004788 126 PKDN 129 (730)
Q Consensus 126 pk~~ 129 (730)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=126.22 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36799999999999999999999999999999883 4668999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004788 125 IPKDNP 130 (730)
Q Consensus 125 ~pk~~~ 130 (730)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 57
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=2.7e-14 Score=127.27 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCC---Ccce
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLD 120 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G---r~L~ 120 (730)
...+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..+.| ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3446899999999999999999999999999999873 45679999999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 004788 121 IHFSIPKDNP 130 (730)
Q Consensus 121 V~~s~pk~~~ 130 (730)
|.++.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=1.3e-14 Score=131.82 Aligned_cols=84 Identities=15% Similarity=0.341 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999988872 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876543
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=127.78 Aligned_cols=84 Identities=18% Similarity=0.426 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.+.++|||+|||.++++++|+++|++||.|..|.. ...++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34557899999999999999999999999999999873 234689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=126.63 Aligned_cols=81 Identities=23% Similarity=0.463 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++ |++..|.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 446899999999999999999999999999999984 46689999999999999999999 999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876554
No 61
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=129.15 Aligned_cols=84 Identities=21% Similarity=0.427 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34557899999999999999999999999999999873 5678999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 62
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=4.7e-15 Score=153.69 Aligned_cols=126 Identities=19% Similarity=0.273 Sum_probs=109.0
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
....++|||+|||.++|+++|+++|+.||.|..|++. +.+|||||+|.+.++|.+|+..|+|..|.|+.|+|.++.+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 97 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA 97 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC
Confidence 3456799999999999999999999999999999884 568999999999999999999999999999999999998753
Q ss_pred hhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc-CCCCCCccccCCC
Q 004788 214 ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLSPI 277 (730)
Q Consensus 214 ~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~-~g~S~gfGfvsp~ 277 (730)
..++.++...++.+++..++. .||.+....++.+ +++++|||||.+.
T Consensus 98 --~l~v~nl~~~~t~~~l~~~F~---------------~~G~i~~v~i~~~~~g~~~g~afV~f~ 145 (261)
T 3sde_A 98 --ALTVKNLSPVVSNELLEQAFS---------------QFGPVEKAVVVVDDRGRATGKGFVEFA 145 (261)
T ss_dssp --EEEEESCCTTCCHHHHHHHHG---------------GGSCEEEEEEEEETTSCEEEEEEEEES
T ss_pred --cccccCCCCCCCHHHHHHHHH---------------hcCCeEEEEeeeCCCCCcCcEEEEEeC
Confidence 468889999999999998854 4555666666555 7889999999764
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=126.67 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 346899999999999999999999999999999984 356789999999999999999999999999999999998
Q ss_pred cC
Q 004788 124 SI 125 (730)
Q Consensus 124 s~ 125 (730)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=1.1e-14 Score=127.93 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
|+++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5799999999999999999999999999999983 46679999999999999999999999999999999999998
Q ss_pred CCCC
Q 004788 126 PKDN 129 (730)
Q Consensus 126 pk~~ 129 (730)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=126.80 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=73.7
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345679999999999999999999999999999976 3456799999999999999999999999999999999999
Q ss_pred CCCch
Q 004788 210 RPGGA 214 (730)
Q Consensus 210 ~pk~~ 214 (730)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98754
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=8.8e-15 Score=125.68 Aligned_cols=77 Identities=17% Similarity=0.399 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5799999999999999999999999999999873 56689999999999999999999999999999999999987
Q ss_pred CC
Q 004788 126 PK 127 (730)
Q Consensus 126 pk 127 (730)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 67
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=133.72 Aligned_cols=92 Identities=24% Similarity=0.309 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcc--cccCCCc
Q 004788 41 VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRK 118 (730)
Q Consensus 41 ~~ge~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng--~~l~Gr~ 118 (730)
..++......++++|||+|||+++++++|+++|++||.|..|... +.||||||+|.+.++|++|++.+++ ..|.|++
T Consensus 20 ~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 20 HMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp --CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 344445556689999999999999999999999999999999854 3589999999999999999999875 6899999
Q ss_pred ceeeecCCCCCCCCC
Q 004788 119 LDIHFSIPKDNPSEK 133 (730)
Q Consensus 119 L~V~~s~pk~~~~~~ 133 (730)
|+|.|+.++......
T Consensus 99 l~V~~a~~k~~~~~~ 113 (119)
T 2ad9_A 99 IYIQFSNHKELKTDS 113 (119)
T ss_dssp CEEEECSSSSCCCCC
T ss_pred EEEEEccCCCCCccc
Confidence 999999876654433
No 68
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.2e-14 Score=123.70 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
+.+|||+|||.++++++|+++|++||+|..+.. +++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999873 466799999999999999999999999999999999999987
Q ss_pred CC
Q 004788 127 KD 128 (730)
Q Consensus 127 k~ 128 (730)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 69
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.6e-14 Score=131.04 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=88.1
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
..++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|||..+.|+.|+|.+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3569999999999999999999999999999976 45668999999999999999999999999999999999998765
Q ss_pred hhhhhhhhchhhhhHHHHHhhhhccCCC
Q 004788 214 ARRNLMQQLNQELEQDEARGFRHQVGSP 241 (730)
Q Consensus 214 ~r~~~~~ql~~~~~q~~~~~~~~~~G~p 241 (730)
.. .++.....++++..++.++|..
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 44 3445566677778787888754
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=128.60 Aligned_cols=81 Identities=28% Similarity=0.451 Sum_probs=73.5
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345679999999999999999999999999999876 344689999999999999999999999999999999999987
Q ss_pred Cch
Q 004788 212 GGA 214 (730)
Q Consensus 212 k~~ 214 (730)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 71
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=124.19 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=69.7
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
+..+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..++|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3568999999999999999999999999999975 45568999999999999999999999999999999999998
Q ss_pred CC
Q 004788 211 PG 212 (730)
Q Consensus 211 pk 212 (730)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=128.38 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444567899999999999999999999999999999873 456799999999999999999999999999999999
Q ss_pred eeecCCCC
Q 004788 121 IHFSIPKD 128 (730)
Q Consensus 121 V~~s~pk~ 128 (730)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99997754
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=128.97 Aligned_cols=81 Identities=17% Similarity=0.439 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456799999999999999999999999999999873 36789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004788 123 FSIPKD 128 (730)
Q Consensus 123 ~s~pk~ 128 (730)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987654
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.5e-14 Score=123.76 Aligned_cols=76 Identities=25% Similarity=0.471 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.|++|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999973 4568999999999999999999999999999999999987
Q ss_pred C
Q 004788 125 I 125 (730)
Q Consensus 125 ~ 125 (730)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=126.23 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457899999999999999999999999999999873 36789999999999999999999999999999999999
Q ss_pred ecCC
Q 004788 123 FSIP 126 (730)
Q Consensus 123 ~s~p 126 (730)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9753
No 76
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.6e-14 Score=127.58 Aligned_cols=84 Identities=20% Similarity=0.436 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhc------ccccC
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLR 115 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Ln------g~~l~ 115 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34557899999999999999999999999999999983 35689999999999999999999999 99999
Q ss_pred CCcceeeecCCCCCC
Q 004788 116 RRKLDIHFSIPKDNP 130 (730)
Q Consensus 116 Gr~L~V~~s~pk~~~ 130 (730)
|++|.|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 77
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4e-14 Score=124.68 Aligned_cols=79 Identities=27% Similarity=0.469 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccC--CCcceeeecCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 126 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~--Gr~L~V~~s~p 126 (730)
..++++|||+|||.++++++|+++|++||.|..|.... .+|||||+|.+.++|++|++.|++..+. |++|.|.|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 34679999999999999999999999999999998653 3899999999999999999999999999 99999999987
Q ss_pred CC
Q 004788 127 KD 128 (730)
Q Consensus 127 k~ 128 (730)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 78
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=129.56 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccc--cCCCcceeeec
Q 004788 48 GEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFS 124 (730)
Q Consensus 48 ~e~psrtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~--l~Gr~L~V~~s 124 (730)
...++++|||+|||. ++++++|+++|++||.|.+|... +.+|||||+|.+.++|++|++.|++.. |.|++|+|.++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 99999999999999999999864 467999999999999999999998754 89999999999
Q ss_pred CCCCC
Q 004788 125 IPKDN 129 (730)
Q Consensus 125 ~pk~~ 129 (730)
..+..
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 76543
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.2e-14 Score=127.78 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=74.7
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999999999999999999999999999976 456789999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887544
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=127.52 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=74.9
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec------CCCccEEEEEEcCHHHHHHHHHHh-CCceeCCceEE
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIK 205 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit------g~skG~AFVeF~d~e~A~kAL~~L-nG~~I~Gr~Ik 205 (730)
.....++|||+|||.++++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.| |+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34457799999999999999999999999999999863 345899999999999999999999 99999999999
Q ss_pred EEecCCCchh
Q 004788 206 LEPSRPGGAR 215 (730)
Q Consensus 206 V~~A~pk~~r 215 (730)
|++++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887544
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=126.86 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe--------CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~--------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
.++++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999999999999999999998873 2367899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=127.32 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
+..+.+.++|||+|||.++++++|+++|++||+|..|.. .++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344557899999999999999999999999999999873 3567899999999999999999999999999999999
Q ss_pred eecC
Q 004788 122 HFSI 125 (730)
Q Consensus 122 ~~s~ 125 (730)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9875
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=127.98 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc--ccccCCCcceeee
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHF 123 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Ln--g~~l~Gr~L~V~~ 123 (730)
.....++++|||+|||.++++++|+++|++||.|..|... +.||||||+|.+.++|++|++.|+ +..+.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3445678999999999999999999999999999999854 348999999999999999999875 5679999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876543
No 84
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=127.38 Aligned_cols=82 Identities=22% Similarity=0.449 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999999999999999884 455789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 85
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=2.4e-14 Score=121.84 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=70.6
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
.+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..++|+.|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999865 3556899999999999999999999999999999999999876
Q ss_pred c
Q 004788 213 G 213 (730)
Q Consensus 213 ~ 213 (730)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=129.28 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=71.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCce--eCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD--INGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~--I~Gr~IkV~~A~pk 212 (730)
...++|||+|||.++++++|+++|++||.|.+|++. +.||+|||+|.+.++|.+|++.|++.. |.|++|+|+|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 356799999999999999999999999999999885 457999999999999999999999875 78999999999875
Q ss_pred c
Q 004788 213 G 213 (730)
Q Consensus 213 ~ 213 (730)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 87
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=123.39 Aligned_cols=78 Identities=27% Similarity=0.408 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
.+.++|||+|||.++++++|+++|++||+|..|... +|||||+|.+.++|++|++.|++..+.|++|+|.++.++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 468999999999999999999999999999999854 89999999999999999999999999999999999987655
Q ss_pred C
Q 004788 130 P 130 (730)
Q Consensus 130 ~ 130 (730)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=131.91 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=72.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG--~~I~Gr~IkV~~A~pk 212 (730)
....+|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|++ ..|.|+.|+|+|++++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 3467999999999999999999999999999999864 479999999999999999998864 7899999999999887
Q ss_pred chhh
Q 004788 213 GARR 216 (730)
Q Consensus 213 ~~r~ 216 (730)
..+.
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 89
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=124.08 Aligned_cols=79 Identities=27% Similarity=0.482 Sum_probs=72.1
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 256689999999999999999999999999999999999
Q ss_pred cCCC
Q 004788 209 SRPG 212 (730)
Q Consensus 209 A~pk 212 (730)
++++
T Consensus 92 a~~g 95 (95)
T 2cqc_A 92 PSSG 95 (95)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9863
No 90
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=125.96 Aligned_cols=83 Identities=31% Similarity=0.402 Sum_probs=74.5
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecC---CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg---~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
....++|||+|||.++++++|+++|++||.|..|++.. .+++||||+|.+.++|++|++.|++..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34567999999999999999999999999999997632 357999999999999999999999999999999999999
Q ss_pred CCchhh
Q 004788 211 PGGARR 216 (730)
Q Consensus 211 pk~~r~ 216 (730)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876543
No 91
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=127.01 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=75.6
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
.....++|||+|||+++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3445779999999999999999999999999999876 3467899999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004788 210 RPGGARR 216 (730)
Q Consensus 210 ~pk~~r~ 216 (730)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=127.22 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=74.5
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345679999999999999999999999999999975 456689999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887644
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=2.1e-14 Score=134.18 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
.....++++|||+|||.++++++|+++|++||+|..|.. +++.+|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999883 457899999999999999999999999999999999
Q ss_pred eeecCCCC
Q 004788 121 IHFSIPKD 128 (730)
Q Consensus 121 V~~s~pk~ 128 (730)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997754
No 94
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.53 E-value=2.1e-14 Score=130.35 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|.+|++ ++..++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44679999999999999999999999999999865 4566899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 987654
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.5e-14 Score=126.69 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=69.1
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...|+|+||++.+|+++|+++|.+||+|.++++. .++|||||+|.+.++|++|++.||+.++.|+.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 5579999999999999999999999999999875 478999999999999999999999999999999999994
No 96
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=3.2e-14 Score=127.00 Aligned_cols=82 Identities=24% Similarity=0.473 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhccccc---CCCcc
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRKL 119 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l---~Gr~L 119 (730)
.+.+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 4557899999999999999999999999999999983 466899999999999999999999999987 89999
Q ss_pred eeeecCCCCC
Q 004788 120 DIHFSIPKDN 129 (730)
Q Consensus 120 ~V~~s~pk~~ 129 (730)
.|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 97
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=3.8e-14 Score=128.51 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=74.9
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|+|..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999976 445689999999999999999999999999999999999
Q ss_pred cCCCchhh
Q 004788 209 SRPGGARR 216 (730)
Q Consensus 209 A~pk~~r~ 216 (730)
++++..+.
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 98876543
No 98
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=2.8e-14 Score=121.95 Aligned_cols=76 Identities=26% Similarity=0.443 Sum_probs=70.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34679999999999999999999999999999975 3456899999999999999999999999999999999998
Q ss_pred C
Q 004788 210 R 210 (730)
Q Consensus 210 ~ 210 (730)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 99
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=124.20 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=73.2
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3569999999999999999999999999999976 35568999999999999999999999999999999999998
Q ss_pred CCchh
Q 004788 211 PGGAR 215 (730)
Q Consensus 211 pk~~r 215 (730)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87544
No 100
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=127.87 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346899999999999999999999999999999883 456899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 101
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=125.07 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=73.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ |++..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999976 34578999999999999999998 9999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987654
No 102
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=3.8e-14 Score=124.52 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=73.0
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|+|..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 468999999999999999999999999999976 356689999999999999999999999999999999999998
Q ss_pred Cchh
Q 004788 212 GGAR 215 (730)
Q Consensus 212 k~~r 215 (730)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7644
No 103
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1.2e-14 Score=138.46 Aligned_cols=124 Identities=19% Similarity=0.388 Sum_probs=103.9
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
.++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ ++..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 568999999999999999999999999999975 45678999999999999999998 46799999999999987
Q ss_pred Cchh----hhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 212 GGAR----RNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 212 k~~r----~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
+... ..++.++...++++++..++.+ ||.+....++.+ +++++||+||.+.
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~---------------~G~i~~~~i~~~~~~g~~~g~afV~f~ 137 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQ---------------WGTIIDAQLMLDKDTGQSRGFGFVTYD 137 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHHT---------------TSCCSEEECCCSSSSSTTSEEEEEEES
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHHh---------------CccEEEEEEEEcCCCCccceEEEEEEC
Confidence 6533 3467788888899999988554 455555666554 7899999999764
No 104
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=126.91 Aligned_cols=81 Identities=20% Similarity=0.431 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEE-Ee-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V-~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
.++++|||+|||.++++++|+++|++||.|..| .. +++++|||||+|.+.++|++|++.|++..+.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 368999999999999999999999999999877 52 456799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 105
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=8.6e-15 Score=129.97 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=68.2
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCC--eEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCc----eeCCceE
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS----DINGKRI 204 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~--I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~----~I~Gr~I 204 (730)
.-.||||+|||+++|+++|+++|++||. |.+|++ ++.++|||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3568999999999999999999999995 566754 4678999999999999999999999997 5999999
Q ss_pred EEEecCC
Q 004788 205 KLEPSRP 211 (730)
Q Consensus 205 kV~~A~p 211 (730)
+|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 106
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=128.58 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
...+.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.+++ .|.|++|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344567899999999999999999999999999999983 466899999999999999999999998 89999999
Q ss_pred eeecCCCCCC
Q 004788 121 IHFSIPKDNP 130 (730)
Q Consensus 121 V~~s~pk~~~ 130 (730)
|.++.++..+
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765444
No 107
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=125.90 Aligned_cols=83 Identities=16% Similarity=0.350 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----C-CCcccEEEEEEcCHHHHHHHHHHhcccccCCCcc
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----A-CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 119 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~-~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L 119 (730)
+....+.++|||+|||.++++++|+++|++|| |..|.. + ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34456789999999999999999999999999 999983 2 678999999999999999999 899999999999
Q ss_pred eeeecCCCCCC
Q 004788 120 DIHFSIPKDNP 130 (730)
Q Consensus 120 ~V~~s~pk~~~ 130 (730)
.|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 108
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=123.40 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456799999999999999999999999999999886 78999999999999999999999999999999999988754
Q ss_pred h
Q 004788 215 R 215 (730)
Q Consensus 215 r 215 (730)
+
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 109
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.7e-14 Score=126.63 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=72.3
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHh--CCceeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL--NRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~L--nG~~I~Gr~IkV~~A~pk 212 (730)
...++|||+|||+++++++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.| ++..+.|+.|+|+|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 4567999999999999999999999999999998754 3899999999999999999987 567899999999999876
Q ss_pred chhh
Q 004788 213 GARR 216 (730)
Q Consensus 213 ~~r~ 216 (730)
..++
T Consensus 92 ~~~~ 95 (101)
T 2cq1_A 92 ELKT 95 (101)
T ss_dssp SCCC
T ss_pred cCcC
Confidence 5443
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.9e-14 Score=124.09 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=72.3
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeC--CceEEEEecCCCc
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN--GKRIKLEPSRPGG 213 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~--Gr~IkV~~A~pk~ 213 (730)
..++|||+|||.++++++|+++|++||.|..|++... ++||||+|.+.++|++|++.||+..|. |+.|+|++++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4578999999999999999999999999999988644 799999999999999999999999999 9999999999865
Q ss_pred h
Q 004788 214 A 214 (730)
Q Consensus 214 ~ 214 (730)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=124.85 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
...+++|||+|||.++++++|+++|++||.|......++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34579999999999999999999999999986323456889999999999999999999999999999999999997754
No 112
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=2.7e-14 Score=128.81 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=80.9
Q ss_pred CCCcceeeecCCCCCCCCCccCCceeEEecCCCc-chHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHH
Q 004788 115 RRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRA 193 (730)
Q Consensus 115 ~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~s-vTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~ 193 (730)
.|.+|.+..+.+.... ......++|||+|||.+ +++++|+++|++||.|..|++ .++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4667777766543332 22234579999999999 999999999999999999998 689999999999999999999
Q ss_pred hCCceeCCceEEEEecCCCc
Q 004788 194 LNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 194 LnG~~I~Gr~IkV~~A~pk~ 213 (730)
|++..|+|+.|+|+++++..
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998544
No 113
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=123.58 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
....+.++|||+|||.++++++|+++|++||.|..|... ++||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345578999999999999999999999999999999854 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 004788 127 KDNP 130 (730)
Q Consensus 127 k~~~ 130 (730)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 114
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3e-14 Score=126.28 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=74.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35679999999999999999999999999999976 3457899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887654
No 115
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=125.98 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=75.5
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
....++|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|++|++.|+|..|.|+.|+|++++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34567999999999999999999999999998887777889999999999999999999999999999999999998876
Q ss_pred hh
Q 004788 214 AR 215 (730)
Q Consensus 214 ~r 215 (730)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 116
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=122.34 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecC-----C-CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg-----~-skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
..++|||+|||.++++++|+++|++||.|..|++.. . .+|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999997621 2 6899999999999999999999999999999999999
Q ss_pred CCCch
Q 004788 210 RPGGA 214 (730)
Q Consensus 210 ~pk~~ 214 (730)
++...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 117
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.5e-14 Score=122.15 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=70.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999999763 456899999999999999999999999999999999998
Q ss_pred C
Q 004788 210 R 210 (730)
Q Consensus 210 ~ 210 (730)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.6e-14 Score=124.97 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhc-cCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccc-cCCCccee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDI 121 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~-fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~-l~Gr~L~V 121 (730)
...++++|||+|||.++++++|+++|++ ||.|..|.. +++++|||||+|.+.++|++|++.|++.. +.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3456899999999999999999999999 999999873 56689999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999776543
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=126.96 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++. ++..|.|++|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34557899999999999999999999999999999873 456889999999999999999998 999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999877654
No 120
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.1e-14 Score=126.07 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=74.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhC------CceeCCce
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALN------RSDINGKR 203 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~Ln------G~~I~Gr~ 203 (730)
...++|||+|||+++++++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456799999999999999999999999999999763 5678999999999999999999999 99999999
Q ss_pred EEEEecCCCchhh
Q 004788 204 IKLEPSRPGGARR 216 (730)
Q Consensus 204 IkV~~A~pk~~r~ 216 (730)
|+|.+++++..+.
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999999876543
No 121
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=2.9e-14 Score=128.24 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456899999999999999999999999999999983 4667999999999999999999999999999999999
Q ss_pred eecCCCC
Q 004788 122 HFSIPKD 128 (730)
Q Consensus 122 ~~s~pk~ 128 (730)
.++.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997654
No 122
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=3.7e-14 Score=127.57 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=73.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999976 3456899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 877654
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=4.5e-14 Score=128.58 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
.....+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..|.|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999999999999983 456799999999999999999999999999999999
Q ss_pred eeecC
Q 004788 121 IHFSI 125 (730)
Q Consensus 121 V~~s~ 125 (730)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99863
No 124
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=125.67 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEec--------CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit--------g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
..++|||+|||.++++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999998652 2567999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 004788 208 PSRPGGAR 215 (730)
Q Consensus 208 ~A~pk~~r 215 (730)
+++++..+
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99886543
No 125
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7e-14 Score=124.28 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=74.0
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecC---CCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg---~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
....++|||+|||.++++++|+++|++||.|..|++.. ..++||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34567999999999999999999999999999997632 358999999999999999999999999999999999998
Q ss_pred CCchh
Q 004788 211 PGGAR 215 (730)
Q Consensus 211 pk~~r 215 (730)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 87544
No 126
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=5.5e-14 Score=125.25 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=74.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCC---ceEEEE
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDING---KRIKLE 207 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G---r~IkV~ 207 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 44679999999999999999999999999999976 34458999999999999999999999999988 999999
Q ss_pred ecCCCchhh
Q 004788 208 PSRPGGARR 216 (730)
Q Consensus 208 ~A~pk~~r~ 216 (730)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876553
No 127
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=1.1e-14 Score=139.47 Aligned_cols=126 Identities=23% Similarity=0.320 Sum_probs=103.7
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----C--CCccEEEEEEcCHHHHHHHHHHhCCceeC---CceEEE
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----P--HKRHHKFIEFYDVRAAEAALRALNRSDIN---GKRIKL 206 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g--~skG~AFVeF~d~e~A~kAL~~LnG~~I~---Gr~IkV 206 (730)
.++|||+|||.++++++|+++|++||.|.+|++. + .++|||||+|.+.++|++|++.|++..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5689999999999999999999999999999652 1 56899999999999999999999998875 688888
Q ss_pred EecCCCc-----hhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc-CCCCCCccccCCC
Q 004788 207 EPSRPGG-----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA-FSKSPGLGTLSPI 277 (730)
Q Consensus 207 ~~A~pk~-----~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~-~g~S~gfGfvsp~ 277 (730)
.++.+.. .+..++.++...++++++..++.+ ||.+....++.+ .++++||+||.+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~---------------~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSS---------------FGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGG---------------GSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHh---------------CCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 8876543 334577888888899999887544 455665666554 6888999999775
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=127.08 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCE----EEEE-eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I----~~V~-~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...++++|||+|||.++++++|+++|++||.| ..+. .+++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34578999999999999999999999999998 4444 578899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 004788 123 FSIPKDNP 130 (730)
Q Consensus 123 ~s~pk~~~ 130 (730)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876543
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=126.42 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
.+.+.++|||+|||.++++++|+++|++||.|+.+..+++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 34568999999999999999999999999999888777889999999999999999999999999999999999999775
Q ss_pred CC
Q 004788 128 DN 129 (730)
Q Consensus 128 ~~ 129 (730)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 130
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=124.34 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCceeEEecCCCcchHHHHH----HHHcccCCeEEEEecCC--CccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 136 NQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLr----eiFs~fG~I~~Vritg~--skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
+..+|||+|||+++++++|+ ++|++||.|.+|++... .++||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45689999999999999999 99999999999987422 2899999999999999999999999999999999999
Q ss_pred CCCch
Q 004788 210 RPGGA 214 (730)
Q Consensus 210 ~pk~~ 214 (730)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=7.8e-15 Score=163.72 Aligned_cols=146 Identities=23% Similarity=0.353 Sum_probs=103.2
Q ss_pred HHHHhhccCCEEEEEe-------CCCcccEE-----EEEEcCHHHHHHHHHHhcccccCCC-----------c--ceeee
Q 004788 69 LRSLFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRR-----------K--LDIHF 123 (730)
Q Consensus 69 L~~lF~~fG~I~~V~~-------~~ksrG~A-----FV~F~d~e~A~kAl~~Lng~~l~Gr-----------~--L~V~~ 123 (730)
|.++|.++|+|..|.. ..+..+|+ |+.|.+..++..++..++......+ . ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999887731 11233444 7778776555444432222111111 0 00111
Q ss_pred cCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCce
Q 004788 124 SIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 124 s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
..+............+|||+||+..+|+++|+++|++||.|+.|.+ ++.++|||||+|.+.++|.+||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222222334579999999999999999999999999999976 45679999999999999999999999999
Q ss_pred eCCceEEEEecCCCch
Q 004788 199 INGKRIKLEPSRPGGA 214 (730)
Q Consensus 199 I~Gr~IkV~~A~pk~~ 214 (730)
|.|+.|+|.++.++..
T Consensus 169 i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTV 184 (437)
T ss_pred ECCEEEEEEEeCCCCC
Confidence 9999999999987543
No 132
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.3e-14 Score=124.92 Aligned_cols=80 Identities=30% Similarity=0.513 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
..+.++|||+|||.++++++|+++|++||+|..|... +.+|||||+|.+.++|++|++.|++..|.|++|.|.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4568999999999999999999999999999999854 568999999999999999999999999999999999998765
Q ss_pred C
Q 004788 129 N 129 (730)
Q Consensus 129 ~ 129 (730)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 133
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.9e-14 Score=127.28 Aligned_cols=80 Identities=26% Similarity=0.412 Sum_probs=73.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45678999999999999999999999999999976 2566899999999999999999999999999999999999
Q ss_pred CCCch
Q 004788 210 RPGGA 214 (730)
Q Consensus 210 ~pk~~ 214 (730)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 87643
No 134
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=121.12 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHh-cccccCCCcceeeecC
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSI 125 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~L-ng~~l~Gr~L~V~~s~ 125 (730)
..+.+.++|||+|||.++++++|+++|++||.|..|... +.+|||||+|.+.++|++|++.| ++..+.|++|+|.|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345578999999999999999999999999999999854 46899999999999999999999 9999999999999863
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=125.76 Aligned_cols=83 Identities=19% Similarity=0.388 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
...+.++|||+|||.++++++|+++|++||.|+.+. .+++.+|||||+|.+.++|++|++.|++..|.|++|+|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 345689999999999999999999999999995544 3667899999999999999999999999999999999999987
Q ss_pred CCCC
Q 004788 127 KDNP 130 (730)
Q Consensus 127 k~~~ 130 (730)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=3e-14 Score=130.19 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=70.8
Q ss_pred CceeEEecCCCcchHHHHHHHHcccC-CeEEEEe-cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYG-EVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG-~I~~Vri-tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
..+|||+|||+++++++|+++|++|| +|..+++ ..+++|||||+|.+.++|++|++.|||.+|+|+.|+|++++...
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 56899999999999999999999999 9999988 35689999999999999999999999999999999999997653
No 137
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=126.12 Aligned_cols=82 Identities=29% Similarity=0.439 Sum_probs=74.1
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999763 56789999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 138
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=129.59 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcc--cccCCCcceeeecC
Q 004788 49 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 125 (730)
Q Consensus 49 e~psrtLfV~NLP~~-vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng--~~l~Gr~L~V~~s~ 125 (730)
..++++|||+|||.+ +++++|+++|++||+|..|... +.+|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 567999999999998 9999999999999999999864 5789999999999999999999875 45999999999997
Q ss_pred CCCCC
Q 004788 126 PKDNP 130 (730)
Q Consensus 126 pk~~~ 130 (730)
.+...
T Consensus 101 ~~~~~ 105 (112)
T 1x4f_A 101 KYKKL 105 (112)
T ss_dssp SCSSS
T ss_pred ccccc
Confidence 65543
No 139
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.7e-14 Score=125.78 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
...++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999998873 456789999999999999999999999999999999999
Q ss_pred cCCC
Q 004788 124 SIPK 127 (730)
Q Consensus 124 s~pk 127 (730)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 140
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=7e-14 Score=124.41 Aligned_cols=83 Identities=18% Similarity=0.372 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+....+.++|||+|||.++++++|+++|++|| |..|.. +++++|||||+|.+.++|++|+ .|++..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34455789999999999999999999999997 988873 4678999999999999999999 8999999999999
Q ss_pred eeecCCCCCC
Q 004788 121 IHFSIPKDNP 130 (730)
Q Consensus 121 V~~s~pk~~~ 130 (730)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 141
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.1e-14 Score=121.85 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=72.7
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
....++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|+.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999985 5699999999999999999999999999999999998865
Q ss_pred hh
Q 004788 214 AR 215 (730)
Q Consensus 214 ~r 215 (730)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 142
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=127.75 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=69.9
Q ss_pred CCceeEEecCCC-cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCc--eeCCceEEEEecCCC
Q 004788 136 NQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS--DINGKRIKLEPSRPG 212 (730)
Q Consensus 136 ~~~tL~V~NLp~-svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~--~I~Gr~IkV~~A~pk 212 (730)
..++|||+|||+ ++++++|+++|++||.|.+|++. ..++||||+|.+.++|++|++.|++. .|.|++|+|+++++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 467999999999 99999999999999999999985 34699999999999999999999864 599999999999864
Q ss_pred c
Q 004788 213 G 213 (730)
Q Consensus 213 ~ 213 (730)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 143
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.9e-14 Score=126.44 Aligned_cols=81 Identities=23% Similarity=0.503 Sum_probs=73.6
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346799999999999999999999999999999763 346899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876644
No 144
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=123.24 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=71.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...++|||+|||.++++++|+++|++||.|..|++. +.+++||||+|.+.++|++|++.||+..|.|+.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 346799999999999999999999999999999763 4458999999999999999999999999999999999987
Q ss_pred CC
Q 004788 211 PG 212 (730)
Q Consensus 211 pk 212 (730)
.+
T Consensus 94 ~G 95 (95)
T 2ywk_A 94 SG 95 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 145
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=3.8e-14 Score=123.13 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=73.6
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|++..+.|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34679999999999999999999999999999875 455789999999999999999999999999999999999988
Q ss_pred Cchh
Q 004788 212 GGAR 215 (730)
Q Consensus 212 k~~r 215 (730)
....
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 146
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=131.28 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 49 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~----~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
..++++|||+|||+++++++|+ ++|++||+|..|.. +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3468999999999999999876 79999999999884 46789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004788 123 FSIPKD 128 (730)
Q Consensus 123 ~s~pk~ 128 (730)
|+.++.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 147
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5e-14 Score=127.07 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=71.4
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCc--eeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRS--DINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~--~I~Gr~IkV~~A~pk 212 (730)
...++|||+|||+++++++|+++|++||.|.+|++.. .|+||||+|.+.++|.+|++.|++. .|.|++|+|+|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 3467999999999999999999999999999998754 4899999999999999999998765 599999999999876
Q ss_pred chh
Q 004788 213 GAR 215 (730)
Q Consensus 213 ~~r 215 (730)
..+
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 148
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=128.94 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
..+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 346799999999999999999999999999998873 5668899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004788 125 IPKDN 129 (730)
Q Consensus 125 ~pk~~ 129 (730)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76654
No 149
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=125.01 Aligned_cols=79 Identities=11% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEE-EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc----c
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK----L 119 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~-~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~----L 119 (730)
.++++|||+|||.++++++|+++|++||+|. .|.. +++++|||||+|.+.++|++|++.|++..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4689999999999999999999999999998 8762 5678899999999999999999999999999999 9
Q ss_pred eeeecCCCC
Q 004788 120 DIHFSIPKD 128 (730)
Q Consensus 120 ~V~~s~pk~ 128 (730)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987654
No 150
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=4.7e-14 Score=121.22 Aligned_cols=77 Identities=12% Similarity=0.333 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
..++|||+|||.++++++|+++|++||.|..|.. .++.+|||||+|.+.++|++|++.|+|..+.|++|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999883 1238999999999999999999999999999999999998
Q ss_pred CCC
Q 004788 125 IPK 127 (730)
Q Consensus 125 ~pk 127 (730)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 151
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=1.3e-14 Score=126.23 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccC--CEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG--~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
.+|||+|||.++++++|+++|++|| .|.+|. .+++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 888776 267889999999999999999999999999999999999987
Q ss_pred CCCC
Q 004788 126 PKDN 129 (730)
Q Consensus 126 pk~~ 129 (730)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 152
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=6.5e-14 Score=129.00 Aligned_cols=84 Identities=18% Similarity=0.444 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456899999999999999999999999999999984 5667999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.|+.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999766543
No 153
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=128.02 Aligned_cols=78 Identities=17% Similarity=0.345 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCC--EEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhccc----ccCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNK----PLRRR 117 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~--I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~----~l~Gr 117 (730)
+..-.||||+|||+++|+++|+++|++||. |.+|+ .++++||||||+|.+.++|++|++.|+|. .+.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345789999999999999999999999995 45665 35789999999999999999999999997 48999
Q ss_pred cceeeecCC
Q 004788 118 KLDIHFSIP 126 (730)
Q Consensus 118 ~L~V~~s~p 126 (730)
+|.|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=4.2e-14 Score=127.92 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=72.8
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
.....++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..++|+.|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34557899999999999999999999999999999886 799999999999999999999999999999999999887
Q ss_pred chh
Q 004788 213 GAR 215 (730)
Q Consensus 213 ~~r 215 (730)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 155
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=131.30 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=75.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE--EE-----eCCCcccEEEEEEcCHHHHHHHHHHhccc----c
Q 004788 45 HPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--LY-----TACKHRGFVMISYYDIRAARTAMRALQNK----P 113 (730)
Q Consensus 45 ~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~--V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~----~ 113 (730)
.+..+.+.++|||+|||.++++++|+++|++||.|.. |+ .+++++|||||+|.+. +|.+|++.|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444567899999999999999999999999999965 65 2678999999999999 999999999999 9
Q ss_pred cCCCcceeeecCCCCCC
Q 004788 114 LRRRKLDIHFSIPKDNP 130 (730)
Q Consensus 114 l~Gr~L~V~~s~pk~~~ 130 (730)
+.|++|+|.++.++...
T Consensus 95 ~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGGCCCCCEECCCSCCC
T ss_pred CCCEEEEEEECCCCCCC
Confidence 99999999999876543
No 156
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=128.89 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.+.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3446799999999999999999999999999988873 56679999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004788 123 FSIPKD 128 (730)
Q Consensus 123 ~s~pk~ 128 (730)
++.++.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 987654
No 157
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=124.65 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=72.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEE-Ee-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-RE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~V-ri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
..++|||+|||.++++++|+++|++||.|..| ++ ++..++||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999887 65 3456899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=2.1e-14 Score=137.55 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=104.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHccc----C-------CeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~f----G-------~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
..++|||+|||.++++++|+++|++| | .|..+++. .++|||||+|.+.++|++|+ .|+|..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 35799999999999999999999999 7 77777764 56899999999999999999 899999999999
Q ss_pred EEEecCCCc----hhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCccccccccc--CCCCCCccccCCC
Q 004788 205 KLEPSRPGG----ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 205 kV~~A~pk~----~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~--~g~S~gfGfvsp~ 277 (730)
+|.++.+.. .+..++.++...++++++..++.+ ||.+....++.+ +++++|||||.+.
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~---------------~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTS---------------FGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHT---------------TSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHh---------------cCCceEEEEEecCCCCCcceEEEEEeC
Confidence 999987653 245578888889999999988554 455555555555 7889999999764
No 159
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=6e-14 Score=126.80 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=73.5
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
.....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..|.|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445679999999999999999999999999999875 34568999999999999999999999999999999999
Q ss_pred ecCCCc
Q 004788 208 PSRPGG 213 (730)
Q Consensus 208 ~A~pk~ 213 (730)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 160
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=5.6e-14 Score=131.63 Aligned_cols=84 Identities=27% Similarity=0.411 Sum_probs=75.2
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
.....++|||+|||.++++++|+++|+.||+|++|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3345679999999999999999999999999999975 34568999999999999999999999999999999999
Q ss_pred ecCCCchhh
Q 004788 208 PSRPGGARR 216 (730)
Q Consensus 208 ~A~pk~~r~ 216 (730)
+++++..+.
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 161
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=124.30 Aligned_cols=77 Identities=23% Similarity=0.392 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE--------EE-----eCCCcccEEEEEEcCHHHHHHHHHHhccccc
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY-----TACKHRGFVMISYYDIRAARTAMRALQNKPL 114 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~--------V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l 114 (730)
...+.++|||+|||.++++++|+++|++||.|.. |. .+++++|||||+|.+.++|++|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456899999999999999999999999999988 65 2467899999999999999999999999999
Q ss_pred CCCcceeeec
Q 004788 115 RRRKLDIHFS 124 (730)
Q Consensus 115 ~Gr~L~V~~s 124 (730)
.|++|+|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999986
No 162
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.3e-14 Score=125.94 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
..++|||+|||.++++++|+++|++||.|.+|++. ..+|||||+|.+.++|++|++.|||..++|+.|+|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35799999999999999999999999999999886 56899999999999999999999999999999999999874
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=6.9e-14 Score=131.01 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
..+.+.++|||+|||.++++++|+++|+.||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556899999999999999999999999999999873 4567999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 164
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.7e-14 Score=121.50 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=72.1
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
....++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998765
Q ss_pred h
Q 004788 214 A 214 (730)
Q Consensus 214 ~ 214 (730)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=131.18 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=72.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG--~~I~Gr~IkV~~A~pk 212 (730)
...++|||+|||+++++++|+++|++||.|++|++.. .+|||||+|++.++|++|++.|++ ..|.|+.|+|+|++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3467999999999999999999999999999998753 479999999999999999999874 6899999999999887
Q ss_pred chhh
Q 004788 213 GARR 216 (730)
Q Consensus 213 ~~r~ 216 (730)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 166
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=8.9e-14 Score=123.90 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
..+.++|||+|||.++++++|+++|++||.|..|... ++||||+|.+.++|++|++.|++..|.|++|.|.++.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 3467999999999999999999999999999999854 6899999999999999999999999999999999998765
Q ss_pred CC
Q 004788 129 NP 130 (730)
Q Consensus 129 ~~ 130 (730)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 167
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.5e-14 Score=124.46 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=71.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
...++|||+|||.++++++|+++|++||.|....+++..+|||||+|.+.++|++|++.|||..|.|+.|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3467999999999999999999999999986323456778999999999999999999999999999999999998864
No 168
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.9e-14 Score=126.38 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEE--------EEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccc
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--------TLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP 113 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~--------~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~ 113 (730)
..+.+.++|||+|||.++++++|+++|++||.|. .|. .+++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455789999999999999999999999999998 465 245779999999999999999999999999
Q ss_pred cCCCcceeeecCCCCCC
Q 004788 114 LRRRKLDIHFSIPKDNP 130 (730)
Q Consensus 114 l~Gr~L~V~~s~pk~~~ 130 (730)
|.|++|+|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 169
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.4e-14 Score=125.92 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..++|||+|||.++++++|+++|++||.|..|... +++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 46999999999999999999999999999999865 68999999999999999999999999999999999998753
No 170
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=3.1e-14 Score=124.91 Aligned_cols=80 Identities=23% Similarity=0.573 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhccCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 49 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~----~lF~~fG~I~~V~~--~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
..++++|||+|||.++++++|+ ++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.|++|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578999999999999999999 99999999999984 34678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004788 123 FSIPKD 128 (730)
Q Consensus 123 ~s~pk~ 128 (730)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998754
No 171
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9.9e-14 Score=122.86 Aligned_cols=76 Identities=28% Similarity=0.399 Sum_probs=71.1
Q ss_pred cCCceeEEecCCC-cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 135 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 135 ~~~~tL~V~NLp~-svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
...++|||+|||. ++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..++|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 4567999999998 99999999999999999999983 7999999999999999999999999999999999998753
No 172
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=128.40 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
....+.++|||+|||.++++++|+++|++||+|..|.. .+.++|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34457899999999999999999999999999998874 345799999999999999999999999999999999999
Q ss_pred cCCC
Q 004788 124 SIPK 127 (730)
Q Consensus 124 s~pk 127 (730)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 173
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=5e-14 Score=124.07 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 49 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 49 e~psrtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..++++|||+|||. ++++++|+++|++||.|..|.. .+|||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45789999999998 9999999999999999999986 4899999999999999999999999999999999999766
Q ss_pred CCC
Q 004788 128 DNP 130 (730)
Q Consensus 128 ~~~ 130 (730)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 174
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=1.9e-14 Score=128.02 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCC------CCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCC-Cc
Q 004788 51 PSRTLFVRNINS------NVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RK 118 (730)
Q Consensus 51 psrtLfV~NLP~------~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G-r~ 118 (730)
.+++|||+|||. ++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 479999999999 9999999999999999999983 47899999999999999999999999999999 99
Q ss_pred ceeeecCCC
Q 004788 119 LDIHFSIPK 127 (730)
Q Consensus 119 L~V~~s~pk 127 (730)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998654
No 175
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=121.51 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=71.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHccc--CCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~f--G~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
...++|||+|||.++++++|+++|++| |.|..|++. ++||||+|.+.++|++|++.|||..|.|+.|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 456799999999999999999999999 999999874 789999999999999999999999999999999999886
Q ss_pred ch
Q 004788 213 GA 214 (730)
Q Consensus 213 ~~ 214 (730)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 176
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=121.56 Aligned_cols=79 Identities=20% Similarity=0.386 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcc--CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~f--G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
...+.++|||+|||.++++++|+++|++| |.|..|.. .+|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34568999999999999999999999999 99999974 47899999999999999999999999999999999998
Q ss_pred CCCC
Q 004788 126 PKDN 129 (730)
Q Consensus 126 pk~~ 129 (730)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 177
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=7.5e-14 Score=124.38 Aligned_cols=79 Identities=24% Similarity=0.484 Sum_probs=73.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|+.|+|++++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 346799999999999999999999999999999985 67999999999999999999999999999999999998765
Q ss_pred hh
Q 004788 215 RR 216 (730)
Q Consensus 215 r~ 216 (730)
+.
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 178
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.4e-14 Score=125.68 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=73.8
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...++|||+|||.++++++|+++|++||.|..|++... ++||||+|.+.++|++|++.|+|..|.|+.|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34679999999999999999999999999999988644 89999999999999999999999999999999999998764
Q ss_pred h
Q 004788 215 R 215 (730)
Q Consensus 215 r 215 (730)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 179
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=1.4e-14 Score=126.10 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=65.6
Q ss_pred ceeEEecCCCcchHHHHHHHHcccC--CeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG--~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
.+|||+|||+++++++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 8888864 56778999999999999999999999999999999999998
Q ss_pred CCch
Q 004788 211 PGGA 214 (730)
Q Consensus 211 pk~~ 214 (730)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 180
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6e-14 Score=124.33 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~--~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
...+.++|||+|||.++++++|+++|+.|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345789999999999999999999999998887776 366789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004788 126 PKDNP 130 (730)
Q Consensus 126 pk~~~ 130 (730)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 181
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=6.3e-14 Score=125.08 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=74.1
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCcee---CCceEE
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDI---NGKRIK 205 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I---~Gr~Ik 205 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 445679999999999999999999999999999976 355789999999999999999999999998 899999
Q ss_pred EEecCCCchh
Q 004788 206 LEPSRPGGAR 215 (730)
Q Consensus 206 V~~A~pk~~r 215 (730)
|.+++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999886544
No 182
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=127.04 Aligned_cols=81 Identities=22% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec---CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 132 EKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 132 ~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit---g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
......++|||+|||.++++++|+++|++||.|..|++. +..+|||||+|.+.++|++|++.|+|..|+|+.|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 334557799999999999999999999999999999763 34589999999999999999999999999999999999
Q ss_pred cCCC
Q 004788 209 SRPG 212 (730)
Q Consensus 209 A~pk 212 (730)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 183
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=123.95 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCC-----Ccceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G-----r~L~V~~ 123 (730)
....++|||+|||.++++++|+++|++||+|..|.+... |||||+|.+.++|++||+.|++..|.| ++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 456899999999999999999999999999999985433 999999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 004788 124 SIPKDN 129 (730)
Q Consensus 124 s~pk~~ 129 (730)
+.++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987654
No 184
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=124.73 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-----ceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-----KRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G-----r~IkV~~A~ 210 (730)
...+|||+|||+++++++|+++|++||+|..|++... +||||+|.+.++|++||+.||+..|.| +.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4679999999999999999999999999999988544 999999999999999999999999999 999999998
Q ss_pred CCch
Q 004788 211 PGGA 214 (730)
Q Consensus 211 pk~~ 214 (730)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 185
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.6e-14 Score=120.52 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
..+.++|||+|||.++++++|+++|++||.|..|... ++||||+|.+.++|++|++.|++..+.|++|+|.++.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3468999999999999999999999999999999854 5699999999999999999999999999999999998764
Q ss_pred C
Q 004788 129 N 129 (730)
Q Consensus 129 ~ 129 (730)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.4e-14 Score=124.12 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=72.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec------CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit------g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....+|||+|||.++++++|+++|++|| |..|++. +..+|||||+|.+.++|++|+ .||+..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3467999999999999999999999999 9999763 566899999999999999999 8999999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 187
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.2e-14 Score=119.21 Aligned_cols=76 Identities=32% Similarity=0.480 Sum_probs=70.3
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHh-CCceeCCceEEEEecC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRAL-NRSDINGKRIKLEPSR 210 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~L-nG~~I~Gr~IkV~~A~ 210 (730)
....++|||+|||.++++++|+++|++||.|..|++.. .++||||+|.+.++|++|++.| ++..+.|+.|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567999999999999999999999999999998763 5799999999999999999999 9999999999999985
No 188
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.9e-14 Score=125.93 Aligned_cols=80 Identities=14% Similarity=0.321 Sum_probs=72.1
Q ss_pred ccCCceeEEecCCCcchHHHHH---HHHcccCCeEEEEecC--------CCccEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 004788 134 DVNQGTLVVFNLDASVSNDDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALRALNRSDINGK 202 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLr---eiFs~fG~I~~Vritg--------~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr 202 (730)
....++|||+|||+++++++|+ ++|++||+|..|++.. ..+|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3446799999999999999999 9999999999997632 3458999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 004788 203 RIKLEPSRPGG 213 (730)
Q Consensus 203 ~IkV~~A~pk~ 213 (730)
.|+|++++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 189
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.7e-14 Score=121.53 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.++++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|+|..+.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46899999999999999999999999999999872 4677999999999999999999999999999999998875
Q ss_pred C
Q 004788 125 I 125 (730)
Q Consensus 125 ~ 125 (730)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 190
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.49 E-value=7e-14 Score=124.98 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
...+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4457899999999999999999999999999998873 567899999999999999999999999999999999998
Q ss_pred cC
Q 004788 124 SI 125 (730)
Q Consensus 124 s~ 125 (730)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 191
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=7.2e-14 Score=127.25 Aligned_cols=77 Identities=22% Similarity=0.423 Sum_probs=70.1
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 345689999999999999999999999999999999999
Q ss_pred cC
Q 004788 209 SR 210 (730)
Q Consensus 209 A~ 210 (730)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 192
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-14 Score=129.23 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=72.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++. +..+|||||+|.+.++|++|+ .|||..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999874 567899999999999999999 99999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 765443
No 193
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=7.7e-14 Score=130.29 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=73.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||+|..|++ ++..+|||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44679999999999999999999999999999976 3567899999999999999999999999999999999999
Q ss_pred CCCc
Q 004788 210 RPGG 213 (730)
Q Consensus 210 ~pk~ 213 (730)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8765
No 194
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1e-13 Score=122.72 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 48 GEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 48 ~e~psrtLfV~NLP~-~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
...++++|||+|||. ++++++|+++|++||.|..|.. .+|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345789999999998 9999999999999999999986 489999999999999999999999999999999999875
Q ss_pred C
Q 004788 127 K 127 (730)
Q Consensus 127 k 127 (730)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 195
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=124.78 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
..+.++|||+|||.++++++|+++|++||.|..|.... .+|||||+|.+.++|++|++.|++..|.|++|+|.|+.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34679999999999999999999999999999998543 38999999999999999999999999999999999998765
Q ss_pred CC
Q 004788 129 NP 130 (730)
Q Consensus 129 ~~ 130 (730)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 196
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=8.1e-14 Score=123.14 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=73.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...++|||+|||.++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|+|..|.|++|+|++++++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 456799999999999999999999999999999886 4579999999999999999999999999999999999987643
No 197
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.1e-14 Score=124.21 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=72.8
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
....++|||+|||.++++++|+++|++||.|.-++. ++..++||||+|.+.++|++|++.||+..|.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345679999999999999999999999999854443 5667899999999999999999999999999999999999887
Q ss_pred chh
Q 004788 213 GAR 215 (730)
Q Consensus 213 ~~r 215 (730)
..+
T Consensus 92 ~~~ 94 (101)
T 2fc9_A 92 GSP 94 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 198
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=124.44 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCC-
Q 004788 48 GEHPSRTLFVRNINSNV------EDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 117 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~v------teedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr- 117 (730)
.+..+++|||+|||.++ ++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44557999999999999 78999999999999999983 567899999999999999999999999999999
Q ss_pred cceeeecCCC
Q 004788 118 KLDIHFSIPK 127 (730)
Q Consensus 118 ~L~V~~s~pk 127 (730)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 199
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.48 E-value=3.8e-14 Score=133.31 Aligned_cols=87 Identities=28% Similarity=0.450 Sum_probs=77.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 44 EHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 44 e~~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
..+....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|++
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33445567899999999999999999999999999999883 5678999999999999999999999999999999
Q ss_pred ceeeecCCCCCC
Q 004788 119 LDIHFSIPKDNP 130 (730)
Q Consensus 119 L~V~~s~pk~~~ 130 (730)
|+|.++.++...
T Consensus 119 l~V~~a~~~~~~ 130 (135)
T 2lea_A 119 LRVQMARYGRPP 130 (135)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 200
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.54 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=70.0
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEE--------EEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~--------Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
.....+|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345679999999999999999999999999998 754 3566899999999999999999999999999
Q ss_pred CceEEEEecC
Q 004788 201 GKRIKLEPSR 210 (730)
Q Consensus 201 Gr~IkV~~A~ 210 (730)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 201
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=127.84 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|+.|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999976 455689999999999999999999999999999999999987
Q ss_pred Cch
Q 004788 212 GGA 214 (730)
Q Consensus 212 k~~ 214 (730)
+..
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 202
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.48 E-value=3.1e-14 Score=126.75 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=71.0
Q ss_pred CceeEEecCCC------cchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-ceE
Q 004788 137 QGTLVVFNLDA------SVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDING-KRI 204 (730)
Q Consensus 137 ~~tL~V~NLp~------svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G-r~I 204 (730)
.++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 9999999999999999999975 36778999999999999999999999999999 999
Q ss_pred EEEecCCC
Q 004788 205 KLEPSRPG 212 (730)
Q Consensus 205 kV~~A~pk 212 (730)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 203
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=4.6e-14 Score=123.52 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.+.-|||+||++.+||++|+++|.+||+|.+++.. .++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 47889999999999999999999999999999853 48999999999999999999999999999999999876
No 204
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=5.9e-14 Score=126.92 Aligned_cols=80 Identities=23% Similarity=0.470 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
...+.++++|||+|||.++++++|+++|++||.|..|... +|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3455678999999999999999999999999999999855 8999999999999999999999999999999999997
Q ss_pred CCC
Q 004788 126 PKD 128 (730)
Q Consensus 126 pk~ 128 (730)
++.
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 205
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.9e-14 Score=125.66 Aligned_cols=82 Identities=27% Similarity=0.379 Sum_probs=73.6
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeE--------EEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeC
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDIN 200 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~--------~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~ 200 (730)
....++|||+|||.++++++|+++|++||.|. .|++ ++..+|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999998 4654 3566899999999999999999999999999
Q ss_pred CceEEEEecCCCchh
Q 004788 201 GKRIKLEPSRPGGAR 215 (730)
Q Consensus 201 Gr~IkV~~A~pk~~r 215 (730)
|+.|+|++++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 206
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.7e-13 Score=122.63 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhccccc--------C
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------R 115 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l--------~ 115 (730)
.+.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999873 466899999999999999999999999999 5
Q ss_pred CCcceeeecCCC
Q 004788 116 RRKLDIHFSIPK 127 (730)
Q Consensus 116 Gr~L~V~~s~pk 127 (730)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 677888888653
No 207
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=8.3e-14 Score=130.15 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=73.6
Q ss_pred cCCceeEEecCCCcchHHHHH----HHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLr----eiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....+|||+||++.+++++|+ ++|++||.|.+|.+ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346789999999999999876 69999999999976 457899999999999999999999999999999999999
Q ss_pred cCCCchhh
Q 004788 209 SRPGGARR 216 (730)
Q Consensus 209 A~pk~~r~ 216 (730)
++++....
T Consensus 107 a~~~~~~~ 114 (127)
T 2a3j_A 107 SETPQSQV 114 (127)
T ss_dssp CCCCCHHH
T ss_pred ccCcchhc
Confidence 99876543
No 208
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=6.7e-14 Score=142.09 Aligned_cols=78 Identities=27% Similarity=0.481 Sum_probs=73.2
Q ss_pred cCCceeEEecCCC-cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~-svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
...++|||+|||. ++++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|+.|+|.+++++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 4567999999999 99999999999999999999987777899999999999999999999999999999999999854
No 209
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.1e-14 Score=125.73 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=74.3
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34579999999999999999999999999999875 3456899999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004788 210 RPGGARR 216 (730)
Q Consensus 210 ~pk~~r~ 216 (730)
+++..+.
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9876654
No 210
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=8.8e-14 Score=144.63 Aligned_cols=79 Identities=23% Similarity=0.443 Sum_probs=72.6
Q ss_pred cCCceeEEecCCCcchHHHHH----HHHcccCCeEEEEe--cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLr----eiFs~fG~I~~Vri--tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
...++|||+|||.++++++|+ ++|++||.|.+|++ +++.+|||||+|.+.++|++|++.|||..|.|+.|+|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 457799999999999999977 89999999999976 567789999999999999999999999999999999999
Q ss_pred cCCCc
Q 004788 209 SRPGG 213 (730)
Q Consensus 209 A~pk~ 213 (730)
++.+.
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 97654
No 211
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=118.90 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhccCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcccccCCC-ccee
Q 004788 52 SRTLFVRNINSNV------EDLELRSLFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 121 (730)
Q Consensus 52 srtLfV~NLP~~v------teedL~~lF~~fG~I~~V~~---~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr-~L~V 121 (730)
+++|||+|||.++ ++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 78999999999999999983 567899999999999999999999999999999 8887
Q ss_pred e
Q 004788 122 H 122 (730)
Q Consensus 122 ~ 122 (730)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 212
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=122.17 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHhhccCCEEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 51 PSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~----~lF~~fG~I~~V~~~--~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+.++|||+|||.++++++|+ ++|++||+|..|... ...+|||||+|.+.++|++|++.|+|..+.|++|+|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 999999999999843 223899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004788 125 IPKDNP 130 (730)
Q Consensus 125 ~pk~~~ 130 (730)
.+....
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 776543
No 213
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=123.35 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC-EEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhc--ccccCCCcce
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 120 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~-I~~V~~~------~ksrG~AFV~F~d~e~A~kAl~~Ln--g~~l~Gr~L~ 120 (730)
.+.++|||+|||.++++++|+++|++||. |..|... ++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35799999999999999999999999998 9999843 4789999999999999999999996 5899999999
Q ss_pred eeecCCCCCC
Q 004788 121 IHFSIPKDNP 130 (730)
Q Consensus 121 V~~s~pk~~~ 130 (730)
|.|+.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887654
No 214
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3e-14 Score=129.12 Aligned_cols=79 Identities=18% Similarity=0.386 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.+...++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|+ .|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3445799999999999999999999999999999984 3678999999999999999999 899999999999999
Q ss_pred ecCCC
Q 004788 123 FSIPK 127 (730)
Q Consensus 123 ~s~pk 127 (730)
++.++
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 98654
No 215
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=123.72 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=72.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.||+..|.|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34679999999999999999999999999999865 33457899999999999999999999999999999999998
Q ss_pred CCchh
Q 004788 211 PGGAR 215 (730)
Q Consensus 211 pk~~r 215 (730)
....+
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65443
No 216
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=125.65 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=73.2
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
.+...++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|++ .|.|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3455789999999999999999999999999999976 345689999999999999999999998 8999999999
Q ss_pred ecCCCchh
Q 004788 208 PSRPGGAR 215 (730)
Q Consensus 208 ~A~pk~~r 215 (730)
+++++...
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99876443
No 217
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=1.4e-13 Score=131.68 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=74.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++||+.||+..|.|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999976 4567899999999999999999999999999999999999
Q ss_pred CCCchhh
Q 004788 210 RPGGARR 216 (730)
Q Consensus 210 ~pk~~r~ 216 (730)
++...++
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8866544
No 218
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-13 Score=119.72 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
...+.++|||+|| ++++++|+++|++||+|..|.. .+.+|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456899999996 9999999999999999999986 478999999999999999999999999999999999999876
Q ss_pred CCC
Q 004788 128 DNP 130 (730)
Q Consensus 128 ~~~ 130 (730)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 219
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=124.29 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=74.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcc-cCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCce-eCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSD-INGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~-fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~-I~Gr~IkV~~ 208 (730)
....+|||+|||.++++++|+++|++ ||.|..|++ ++.++|||||+|.+.++|++|++.|++.. |.|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34679999999999999999999999 999999976 45678999999999999999999999999 9999999999
Q ss_pred cCCCchhh
Q 004788 209 SRPGGARR 216 (730)
Q Consensus 209 A~pk~~r~ 216 (730)
++++..+.
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98876554
No 220
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=8.8e-14 Score=128.11 Aligned_cols=81 Identities=26% Similarity=0.403 Sum_probs=73.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44679999999999999999999999999999976 4556899999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 221
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=122.07 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=73.9
Q ss_pred CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEE--ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 133 KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR--ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 133 ~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr--itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
.....++|||+|||.++++++|+++|+.|+.|..++ .++..++||||+|.+.++|++|++.||+..|.|+.|+|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345678999999999999999999999998777665 356678999999999999999999999999999999999999
Q ss_pred CCchh
Q 004788 211 PGGAR 215 (730)
Q Consensus 211 pk~~r 215 (730)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 222
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=1.1e-13 Score=119.20 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=70.1
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|+ .|||..+.|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999865 4566899999999999999999 899999999999999998
Q ss_pred CC
Q 004788 211 PG 212 (730)
Q Consensus 211 pk 212 (730)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 223
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.3e-14 Score=126.13 Aligned_cols=77 Identities=13% Similarity=0.274 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
+..++|||+|||.++++++|+++|++||.|..|... +.+|||||+|.+.++|++|++.|+|..|.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 357899999999999999999999999999999854 58899999999999999999999999999999999998653
No 224
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=1.3e-13 Score=124.31 Aligned_cols=77 Identities=23% Similarity=0.493 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 49 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 49 e~psrtLfV~NLP~~-vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
..++++|||+|||.+ +++++|+++|++||.|..|.. .+|||||+|.+.++|++|++.|++..|.|++|+|.++.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345699999999999 999999999999999999987 7899999999999999999999999999999999999754
Q ss_pred C
Q 004788 128 D 128 (730)
Q Consensus 128 ~ 128 (730)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 225
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=7.2e-14 Score=124.09 Aligned_cols=79 Identities=18% Similarity=0.376 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
.....++|||+|||.++++++|+++|++|| |..|.. +++++|||||+|.+.++|++|+ .|+|..|.|++|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345689999999999999999999999999 999983 4667999999999999999999 89999999999999
Q ss_pred eecCCCC
Q 004788 122 HFSIPKD 128 (730)
Q Consensus 122 ~~s~pk~ 128 (730)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9987653
No 226
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=2.8e-13 Score=124.66 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
...++++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456899999999999999999999999999998873 456899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9775543
No 227
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=8.4e-14 Score=122.13 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=73.7
Q ss_pred cCCceeEEecCCCcchHHHHH----HHHcccCCeEEEEec--CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLr----eiFs~fG~I~~Vrit--g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
...++|||+|||.++++++|+ ++|++||.|..|++. +..+|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999 999999999999863 35679999999999999999999999999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987644
No 228
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=1e-13 Score=119.53 Aligned_cols=76 Identities=22% Similarity=0.433 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
..++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999872 5678999999999999999999 899999999999999987
Q ss_pred CC
Q 004788 126 PK 127 (730)
Q Consensus 126 pk 127 (730)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 229
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-14 Score=122.71 Aligned_cols=79 Identities=27% Similarity=0.340 Sum_probs=70.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCC-eEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC-ceeCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-SDINGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~-I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG-~~I~Gr~IkV~~A~pk 212 (730)
...++|||+|||.++++++|+++|++||. |..+.+ .+++||||+|.+.++|++|++.||| ..|+|+.|+|++++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34678999999999999999999999999 666655 3589999999999999999999999 9999999999999987
Q ss_pred chh
Q 004788 213 GAR 215 (730)
Q Consensus 213 ~~r 215 (730)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 230
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.47 E-value=9.2e-14 Score=119.58 Aligned_cols=76 Identities=18% Similarity=0.384 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.+.+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4557899999999999999999999999999999873 46789999999999999999997 58888999999998
Q ss_pred ec
Q 004788 123 FS 124 (730)
Q Consensus 123 ~s 124 (730)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 231
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.47 E-value=2.1e-13 Score=129.68 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
....+.++|||+|||+++++++|+++|++||.|..|.....++|||||+|.+.++|++|++.|+|..|.|++|+|.++.+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34456899999999999999999999999999999997666899999999999999999999999999999999999876
Q ss_pred CC
Q 004788 127 KD 128 (730)
Q Consensus 127 k~ 128 (730)
+.
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 232
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=121.71 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=71.4
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++|| |..|++ ++..+|||||+|.+.++|++|+ .||+..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4567999999999999999999999997 998875 3566899999999999999999 89999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887644
No 233
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.4e-14 Score=122.71 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC-EEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcc-cccCCCcceeeecCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPK 127 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~-I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng-~~l~Gr~L~V~~s~pk 127 (730)
.+.++|||+|||.++++++|+++|++||. |..+.. .++|||||+|.+.++|++|++.|++ ..+.|++|+|.++.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 46799999999999999999999999999 665554 4689999999999999999999999 9999999999999876
Q ss_pred CCC
Q 004788 128 DNP 130 (730)
Q Consensus 128 ~~~ 130 (730)
...
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 234
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=5.9e-14 Score=123.51 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
....++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34579999999999999999999999999985332 3567899999999999999999999999999999999999
Q ss_pred cCC
Q 004788 124 SIP 126 (730)
Q Consensus 124 s~p 126 (730)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 235
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=125.07 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=71.9
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
++|||+|||.++++++|+++|++||.|..|++...+++||||+|.+.++|++|++.|+|..+.|+.|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 37999999999999999999999999999987655789999999999999999999999999999999999988653
No 236
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.2e-13 Score=129.65 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=70.5
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccE-EEEEEcCHHHHHHHHHHhCCceeCC--ceEEEEecCCCc
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 213 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~-AFVeF~d~e~A~kAL~~LnG~~I~G--r~IkV~~A~pk~ 213 (730)
-.|||+||++.+|+++|+++|++||+|.+|++..+.+++ |||+|.+.++|++|++.|||..|.| +.|+|+|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 368899999999999999999999999999876666788 9999999999999999999999988 999999999864
No 237
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=1.9e-13 Score=130.78 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...+.++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999999999999999999999999999984 46789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 004788 123 FSIPKDN 129 (730)
Q Consensus 123 ~s~pk~~ 129 (730)
|+.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9976543
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=127.51 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457899999999999999999999999999999983 4568999999999999999999999999999999999
Q ss_pred eec
Q 004788 122 HFS 124 (730)
Q Consensus 122 ~~s 124 (730)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 874
No 239
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-13 Score=120.60 Aligned_cols=82 Identities=15% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 47 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 47 ~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++ ++..|.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34556899999999999999999999999999999873 46789999999999999999998 477899999999
Q ss_pred eecCCCCCC
Q 004788 122 HFSIPKDNP 130 (730)
Q Consensus 122 ~~s~pk~~~ 130 (730)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876554
No 240
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.1e-14 Score=122.71 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.3
Q ss_pred cCCceeEEecCCC-cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 135 VNQGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 135 ~~~~tL~V~NLp~-svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
...++|||+|||. ++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|+|..+.|+.|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4567999999998 99999999999999999999984 7999999999999999999999999999999999998765
Q ss_pred hh
Q 004788 214 AR 215 (730)
Q Consensus 214 ~r 215 (730)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 241
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=3.5e-14 Score=136.78 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=101.1
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEE----EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~V----ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....++|||+|||.++++++|+++|.+||.|..+ ..++.++|||||+|.+.++|.+|+ +|+|..+.|+.|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 3457799999999999999999999999865442 235678999999999999999999 59999999999999999
Q ss_pred CCCch------hhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCcccccccccCCCCCCccccCCC
Q 004788 210 RPGGA------RRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNPLHAFSKSPGLGTLSPI 277 (730)
Q Consensus 210 ~pk~~------r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~~~~~g~S~gfGfvsp~ 277 (730)
.++.. +..++.++...++++++..++.+ +|.+... ..+++++||+||.+.
T Consensus 89 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~---------------~g~v~~~---~~~~~~~g~afV~f~ 144 (175)
T 1fje_B 89 KGRDSKKVRAARTLLAKNLSFNITEDELKEVFED---------------ALEIRLV---SQDGKSKGIAYIEFK 144 (175)
T ss_dssp CCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTT---------------CSEEEEE---CSSSSCCSEEEEECS
T ss_pred CCccccccccCCEEEEeCCCCCCCHHHHHHHHHh---------------cCeEEEe---cCCCCCceEEEEEEC
Confidence 86543 34477788888889999887544 4434322 457899999999765
No 242
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.46 E-value=1.9e-13 Score=122.17 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=70.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
....+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34679999999999999999999999999999865 34568999999999999999999999999999999999985
No 243
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.46 E-value=2.5e-14 Score=131.43 Aligned_cols=77 Identities=26% Similarity=0.456 Sum_probs=70.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|+ .|||..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999865 4567899999999999999999 799999999999999998
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 244
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.2e-14 Score=122.49 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=72.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeE-EEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCce----E
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR----I 204 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~-~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~----I 204 (730)
...++|||+|||.++++++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3467999999999999999999999999999 8865 4566899999999999999999999999999999 9
Q ss_pred EEEecCCCc
Q 004788 205 KLEPSRPGG 213 (730)
Q Consensus 205 kV~~A~pk~ 213 (730)
+|+|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 245
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=4.7e-14 Score=138.15 Aligned_cols=124 Identities=19% Similarity=0.295 Sum_probs=100.2
Q ss_pred CceeEEecCCCcchHHHHHHHHccc----C-------CeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~f----G-------~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
.++|||+|||.++++++|+++|++| | .|..++. +.++|||||+|.+.++|++|+ .|||..|.|+.|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 5789999999999999999999999 5 6777765 466899999999999999999 8999999999999
Q ss_pred EEecCCCc------------------------hhhhhhhhchhhhhHHHHHhhhhccCCCCCCCCCCcccCCCCcccccc
Q 004788 206 LEPSRPGG------------------------ARRNLMQQLNQELEQDEARGFRHQVGSPVTNSPPGTWAQFGSPVERNP 261 (730)
Q Consensus 206 V~~A~pk~------------------------~r~~~~~ql~~~~~q~~~~~~~~~~G~p~~~spp~~f~~~Gsp~~~~~ 261 (730)
|.++.+.. .+..++.++...++++++..++. .||.+....+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~---------------~~G~v~~~~~ 146 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT---------------SFGPLKAFNL 146 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH---------------TBSCEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH---------------HcCCccEEEE
Confidence 99987642 23345666667777777777644 4555656666
Q ss_pred ccc--CCCCCCccccCCC
Q 004788 262 LHA--FSKSPGLGTLSPI 277 (730)
Q Consensus 262 ~~~--~g~S~gfGfvsp~ 277 (730)
+.+ +++++||+||.+.
T Consensus 147 ~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 147 VKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp EECTTTCSEEEEEEEEES
T ss_pred eecCCCCCcceEEEEEEC
Confidence 655 7889999999764
No 246
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.9e-14 Score=125.95 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=71.1
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
..++|||+|||.++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..|.|+.|+|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35699999999999999999999999999999885 47899999999999999999999999999999999999764
No 247
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=122.63 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=71.0
Q ss_pred cCCceeEEecCCCcc------hHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc-eE
Q 004788 135 VNQGTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RI 204 (730)
Q Consensus 135 ~~~~tL~V~NLp~sv------TeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr-~I 204 (730)
...++|||+|||..+ ++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 88999999999999999976 456789999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 004788 205 KLEPSRPG 212 (730)
Q Consensus 205 kV~~A~pk 212 (730)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 248
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-13 Score=118.87 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=71.4
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...++|||+|+ ++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|+|..|.|+.|+|++++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 34679999996 89999999999999999999984 6789999999999999999999999999999999999988654
Q ss_pred h
Q 004788 215 R 215 (730)
Q Consensus 215 r 215 (730)
+
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 249
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=121.63 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEE-----ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-----itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....+|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3467899999999999999999999999986442 24567899999999999999999999999999999999999
Q ss_pred CCC
Q 004788 210 RPG 212 (730)
Q Consensus 210 ~pk 212 (730)
+..
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=3.5e-14 Score=124.10 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 33579999999999999999999999999976433 3567899999999999999999999999999999999998
Q ss_pred cC
Q 004788 124 SI 125 (730)
Q Consensus 124 s~ 125 (730)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 251
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=9.6e-14 Score=125.71 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHhhccCCEEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~---~lF~~fG~I~~V~~~--------~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
..+.++|||+|||+++++++|+ ++|++||+|..|... ++++|||||+|.+.++|++|++.|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457999999999999999999 999999999998831 24569999999999999999999999999999
Q ss_pred cceeeecCCCC
Q 004788 118 KLDIHFSIPKD 128 (730)
Q Consensus 118 ~L~V~~s~pk~ 128 (730)
+|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 252
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=6.7e-14 Score=137.85 Aligned_cols=76 Identities=28% Similarity=0.491 Sum_probs=71.8
Q ss_pred CceeEEecCCC-cchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 137 QGTLVVFNLDA-SVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 137 ~~tL~V~NLp~-svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
.++|||+|||. ++++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|+.|+|.++++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 46899999999 99999999999999999999987777899999999999999999999999999999999999754
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=124.92 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=72.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCe----EEEE-ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I----~~Vr-itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.| ..++ .++.++|||||+|.+.++|++|++.|+|..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346799999999999999999999999998 4554 36788999999999999999999999999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987654
No 254
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=8.4e-14 Score=127.18 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC-CEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG-~I~~V~~-~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
...++|||+|||+++++++|+++|++|| +|..+.. ..+++|||||+|.+.++|++|++.|+|..|.|++|+|.++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3568999999999999999999999999 8999886 4578999999999999999999999999999999999998643
No 255
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=7.7e-14 Score=127.74 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=70.9
Q ss_pred cCCceeEEecCCCc-chHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEEecCC
Q 004788 135 VNQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR--SDINGKRIKLEPSRP 211 (730)
Q Consensus 135 ~~~~tL~V~NLp~s-vTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG--~~I~Gr~IkV~~A~p 211 (730)
...++|||+|||++ +++++|+++|++||+|.+|++. +.+|||||+|.+.++|++|++.|++ ..|.|++|+|+++++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 34679999999998 9999999999999999999985 5689999999999999999998864 569999999999986
Q ss_pred Cch
Q 004788 212 GGA 214 (730)
Q Consensus 212 k~~ 214 (730)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 256
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=4.5e-13 Score=123.27 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=72.3
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34679999999999999999999999999999976 34578999999999999999999999999999999999998
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 257
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.2e-13 Score=120.84 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE-EE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~-V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||.|.. |. .+++++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346799999999999999999999999999987 65 2677899999999999999999996 99999999999998
Q ss_pred cCCCC
Q 004788 124 SIPKD 128 (730)
Q Consensus 124 s~pk~ 128 (730)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86654
No 258
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=3.4e-13 Score=128.88 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|+|..|.|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999999999999999983 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 259
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.9e-13 Score=123.60 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=70.5
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.+ +..|+|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999976 3566899999999999999999976 5999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 260
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=123.62 Aligned_cols=77 Identities=12% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+.+.++|||+|||.++|+++|+++|++||+|..|.. .++++|||||+|.+.++|++|+. +++..+.|+.|.|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 445799999999999999999999999999999983 36789999999999999999999 9999999999999876
Q ss_pred CC
Q 004788 125 IP 126 (730)
Q Consensus 125 ~p 126 (730)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 261
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=7.9e-14 Score=121.83 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...+|||+|||+++++++|+++|++||.|..+++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3579999999999999999999999999875532 45678999999999999999999999999999999999987
Q ss_pred C
Q 004788 211 P 211 (730)
Q Consensus 211 p 211 (730)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 262
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=132.75 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccC--CeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG--~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
..++|||+|||+++++++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 356999999999999999999999999 9999875 567799999999999999999999999999999999999
Q ss_pred cCCCch
Q 004788 209 SRPGGA 214 (730)
Q Consensus 209 A~pk~~ 214 (730)
+.++..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 987543
No 263
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=9.1e-14 Score=123.44 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=69.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe------cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri------tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
...++|||+|||.++++++|+++|++|| |.+|++ +++++|||||+|.+.++|++|+ .|+|..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4467999999999999999999999999 999976 3456899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 004788 209 SRPGG 213 (730)
Q Consensus 209 A~pk~ 213 (730)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98763
No 264
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=122.76 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=73.3
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||+++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++. ++..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 445679999999999999999999999999999865 345679999999999999999998 99999999999999
Q ss_pred cCCCchh
Q 004788 209 SRPGGAR 215 (730)
Q Consensus 209 A~pk~~r 215 (730)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987654
No 265
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=118.77 Aligned_cols=78 Identities=9% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
....++|||+|||.++++++|+++|++| .|..|.. +++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3467999999999999999999999999 8888762 56789999999999999999999 9999999999999998
Q ss_pred CCCC
Q 004788 125 IPKD 128 (730)
Q Consensus 125 ~pk~ 128 (730)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 266
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=122.80 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=72.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCC-eEEEEec------CCCccEEEEEEcCHHHHHHHHHHhC--CceeCCceEE
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALRALN--RSDINGKRIK 205 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~-I~~Vrit------g~skG~AFVeF~d~e~A~kAL~~Ln--G~~I~Gr~Ik 205 (730)
...++|||+|||.++++++|+++|++||. |..|++. +.++|||||+|.+.++|++|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34679999999999999999999999998 9999764 3678999999999999999999996 5899999999
Q ss_pred EEecCCCchh
Q 004788 206 LEPSRPGGAR 215 (730)
Q Consensus 206 V~~A~pk~~r 215 (730)
|++++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987653
No 267
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=125.29 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=72.3
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++||+. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34579999999999999999999999999999976 345689999999999999999997 999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
+++..+
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987654
No 268
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=1.7e-13 Score=118.69 Aligned_cols=75 Identities=13% Similarity=0.307 Sum_probs=70.2
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|++|++.|||..+.|++|+|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35689999999999999999999999 99999885 77899999999999999999999999999999999999754
No 269
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.9e-13 Score=117.15 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~--~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
...++|||+|||.++++++|+++|++||.|..|+ ...+..+.|||+|.+.++|++|++.|+|..+.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3579999999999999999999999999999994 34445566999999999999999999999999999999999876
Q ss_pred C
Q 004788 128 D 128 (730)
Q Consensus 128 ~ 128 (730)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 270
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.44 E-value=3.4e-13 Score=115.99 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=67.8
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||+++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999975 35668999999999999999996 688999999999987
Q ss_pred c
Q 004788 209 S 209 (730)
Q Consensus 209 A 209 (730)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 271
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.2e-14 Score=120.16 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=69.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4569999999999999999999999999999975 35568999999999999999999999999999999998876
Q ss_pred C
Q 004788 211 P 211 (730)
Q Consensus 211 p 211 (730)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 272
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=117.73 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEE-ec-CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIR-ET-PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vr-it-g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
..++|||+|||+++++++|+++|++||.|..|+ +. ....+.|||+|.+.++|++|++.|||..|.|+.|+|+++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457899999999999999999999999999995 43 3345669999999999999999999999999999999999874
No 273
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.43 E-value=1.9e-13 Score=123.64 Aligned_cols=81 Identities=16% Similarity=0.389 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456899999999999999999999999999999983 3678999999999999999999976 589999999999
Q ss_pred ecCCCCC
Q 004788 123 FSIPKDN 129 (730)
Q Consensus 123 ~s~pk~~ 129 (730)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 274
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=133.10 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC--CEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG--~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..++|||+|||.++++++|+++|++|| .|..|+. +++++|||||+|.+.++|++||+.|+|..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 8998873 678899999999999999999999999999999999999
Q ss_pred cCCC
Q 004788 124 SIPK 127 (730)
Q Consensus 124 s~pk 127 (730)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 275
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=1.2e-13 Score=115.45 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=65.2
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
+|||+|||+++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ |++..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999965 45668999999999999999998 9999999999999885
No 276
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.5e-13 Score=122.08 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=70.3
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....++|||+|||+++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. +++..|+|+.|+|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999763 5678999999999999999999 9999999999999987
Q ss_pred CC
Q 004788 210 RP 211 (730)
Q Consensus 210 ~p 211 (730)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 277
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.43 E-value=6.1e-14 Score=121.49 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.+ |++|++.|+|..+.|++|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999883 3678999999999999 99999999999999999999999765
Q ss_pred CC
Q 004788 128 DN 129 (730)
Q Consensus 128 ~~ 129 (730)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 278
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.7e-13 Score=124.58 Aligned_cols=81 Identities=19% Similarity=0.429 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++. ++..|.|++|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345699999999999999999999999999988873 466899999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q 004788 124 SIPKDNP 130 (730)
Q Consensus 124 s~pk~~~ 130 (730)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9877543
No 279
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=2.7e-13 Score=131.94 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=70.1
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEec-CCCccEEEEEEcCHHHHHHHHHHhCCceeCC--ceEEEEecCCCc
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 213 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-g~skG~AFVeF~d~e~A~kAL~~LnG~~I~G--r~IkV~~A~pk~ 213 (730)
..+|||+||++.+++++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3479999999999999999999999999999874 3457899999999999999999999999965 999999999864
No 280
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=117.21 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=63.9
Q ss_pred ceeEEecCCCcc------hHHHHHHHHcccCCeEEEEe---cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc-eEEE
Q 004788 138 GTLVVFNLDASV------SNDDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK-RIKL 206 (730)
Q Consensus 138 ~tL~V~NLp~sv------TeedLreiFs~fG~I~~Vri---tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr-~IkV 206 (730)
++|||+|||..+ ++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 78999999999999999976 446689999999999999999999999999999 8876
No 281
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.42 E-value=1.4e-13 Score=115.08 Aligned_cols=70 Identities=16% Similarity=0.389 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 54 tLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999873 56789999999999999999998 9999999999999874
No 282
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=1.4e-13 Score=119.22 Aligned_cols=76 Identities=16% Similarity=0.367 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 127 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk 127 (730)
...++|||+|||.++++++|+++|++| .|..+... +++|||||+|.+.++|++|++.|+|..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 357999999999999999999999999 99988764 78999999999999999999999999999999999998653
No 283
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.1e-13 Score=116.03 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=70.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
....+|||+|||.++++++|+++|++| .|..|++ ++.++|||||+|.+.++|++|++ |||..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 346799999999999999999999999 8988865 45568999999999999999999 99999999999999998
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 284
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1e-13 Score=122.77 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34679999999999999999999999999765511 356789999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 004788 125 IPKDN 129 (730)
Q Consensus 125 ~pk~~ 129 (730)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=7e-13 Score=123.65 Aligned_cols=76 Identities=26% Similarity=0.430 Sum_probs=69.4
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 345789999999999999999999999999999999998
Q ss_pred c
Q 004788 209 S 209 (730)
Q Consensus 209 A 209 (730)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=122.67 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=71.5
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEE----EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~V----ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
....+|||+|||.++++++|+++|++||.|..+ +.++.++|||||+|.+.++|++|++ |||..|.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 346799999999999999999999999987652 2356789999999999999999998 99999999999999999
Q ss_pred CCchhh
Q 004788 211 PGGARR 216 (730)
Q Consensus 211 pk~~r~ 216 (730)
++..++
T Consensus 94 ~~~~~~ 99 (101)
T 1fj7_A 94 GRDGTR 99 (101)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 287
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.1e-13 Score=120.35 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=70.7
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCcee--------CCc
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDI--------NGK 202 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I--------~Gr 202 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45679999999999999999999999999999876 345689999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 004788 203 RIKLEPSRPG 212 (730)
Q Consensus 203 ~IkV~~A~pk 212 (730)
.|+|.|+.|+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 288
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=128.74 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=71.6
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEE--EEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCc----eeCCc
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRS----DINGK 202 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~--Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~----~I~Gr 202 (730)
....++|||+|||+++++++|+++|++||.|.. |++ ++.++|||||+|.+. +|.+|++.|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 654 567799999999999 999999999999 99999
Q ss_pred eEEEEecCCCc
Q 004788 203 RIKLEPSRPGG 213 (730)
Q Consensus 203 ~IkV~~A~pk~ 213 (730)
.|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 289
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=4.6e-13 Score=124.72 Aligned_cols=74 Identities=28% Similarity=0.302 Sum_probs=67.8
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccE-EEEEEcCHHHHHHHHHHhCCceeCC--ceEEEEecCCCc
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 213 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~-AFVeF~d~e~A~kAL~~LnG~~I~G--r~IkV~~A~pk~ 213 (730)
.|||+||++.+++++|+++|++||.|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| +.|+|+|++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4789999999999999999999999999987544 486 9999999999999999999999987 699999999875
No 290
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=7.3e-13 Score=128.91 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcccccCC--CcceeeecCCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 127 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G--r~L~V~~s~pk 127 (730)
...+|||+||++++++++|+++|++||+|++|.+ ..+.+|||||+|.+.++|++|++.|+|..|.| ++|+|.|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 3467899999999999999999999999999985 34468899999999999999999999999965 99999999886
Q ss_pred CC
Q 004788 128 DN 129 (730)
Q Consensus 128 ~~ 129 (730)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 291
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.8e-13 Score=117.13 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=70.8
Q ss_pred ccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 134 DVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 134 ~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ ++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345679999999999999999999999999999875 35668999999999999999998 57899999999999
Q ss_pred cCCCch
Q 004788 209 SRPGGA 214 (730)
Q Consensus 209 A~pk~~ 214 (730)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988754
No 292
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=8.9e-14 Score=120.45 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=67.0
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEec-----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit-----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.+ |++|++.|||..++|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999763 566899999999999 99999999999999999999999875
Q ss_pred ch
Q 004788 213 GA 214 (730)
Q Consensus 213 ~~ 214 (730)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.6e-13 Score=115.21 Aligned_cols=79 Identities=16% Similarity=0.292 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
...++|||+|||.++++++|+++|++||.|..|........||||+|.+.++|++|++ |++..|.|++|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3578999999999999999999999999999986433222299999999999999999 999999999999998876544
No 294
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9e-13 Score=116.62 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCcE-EEEcCCCCCCcHHH----HHHHhhcc-CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 51 PSRT-LFVRNINSNVEDLE----LRSLFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 51 psrt-LfV~NLP~~vteed----L~~lF~~f-G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
|+.| |||+|||.++++++ |+++|++| |+|.+|. + |+|||.|.+.++|++|++.|+|..+.||+|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 5677 99999999999988 55899999 5999983 2 99999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004788 125 IPKDNP 130 (730)
Q Consensus 125 ~pk~~~ 130 (730)
+.+.+.
T Consensus 82 ~~~sd~ 87 (96)
T 2diu_A 82 PKNREL 87 (96)
T ss_dssp CCSCCC
T ss_pred CCCcce
Confidence 876554
No 295
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-13 Score=115.79 Aligned_cols=71 Identities=17% Similarity=0.417 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
++|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999999999999999999999988872 46789999999999999999999999 9999999999876
No 296
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.7e-13 Score=122.91 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=70.5
Q ss_pred CCCCCcEEEE--cCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccccc-----CCCcce
Q 004788 48 GEHPSRTLFV--RNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLD 120 (730)
Q Consensus 48 ~e~psrtLfV--~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l-----~Gr~L~ 120 (730)
...++++||| +||+.++++++|+++|++||+|..|... ..||||||+|.+.++|++|++.|||..+ .|++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3457899999 7799999999999999999999999854 4689999999999999999999999988 688999
Q ss_pred eeecCCC
Q 004788 121 IHFSIPK 127 (730)
Q Consensus 121 V~~s~pk 127 (730)
|.|+...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9998643
No 297
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=5e-13 Score=129.34 Aligned_cols=84 Identities=20% Similarity=0.403 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 46 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 46 ~~~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999873 556799999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 004788 121 IHFSIPKDN 129 (730)
Q Consensus 121 V~~s~pk~~ 129 (730)
|.|+.++..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976654
No 298
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.9e-13 Score=126.11 Aligned_cols=77 Identities=9% Similarity=0.191 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE---EE--eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT---LY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~---V~--~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++++++|+++|+.||.|.. +. .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 445799999999999999999999999999754 22 467789999999999999999999 999999999999998
Q ss_pred cCC
Q 004788 124 SIP 126 (730)
Q Consensus 124 s~p 126 (730)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 299
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6e-13 Score=119.08 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=70.3
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEE-EEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~-Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....+|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 44679999999999999999999999999987 754 567789999999999999999997 999999999999998
Q ss_pred CCCc
Q 004788 210 RPGG 213 (730)
Q Consensus 210 ~pk~ 213 (730)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7643
No 300
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.40 E-value=5.6e-13 Score=122.40 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999999998873 5678999999999999999999 799999999999999987
Q ss_pred CCC
Q 004788 126 PKD 128 (730)
Q Consensus 126 pk~ 128 (730)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 301
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=125.62 Aligned_cols=80 Identities=19% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE--------E--EeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------L--YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~--------V--~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
..++++|||+|||.++++++|+++|++||.|.. + ..+++++|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346899999999999999999999999998754 2 257889999999999999999999999999999999
Q ss_pred ceeeecCCCC
Q 004788 119 LDIHFSIPKD 128 (730)
Q Consensus 119 L~V~~s~pk~ 128 (730)
|.|.++.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.5e-13 Score=115.91 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=68.3
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
..++|||+|||.++++++|+++|++||.|.+|........||||+|.+.++|++|++ |+|..|+|+.|+|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 456999999999999999999999999999985433222299999999999999999 999999999999999876543
No 303
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=1e-12 Score=114.69 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=63.8
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCce--eCCceEEEEecCCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSD--INGKRIKLEPSRPG 212 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~--I~Gr~IkV~~A~pk 212 (730)
....+|||+|||+++++++|+++|++||.|.+|++..+++|||||+|.+.++|++ |++.. +.|++|.|.+++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3467999999999999999999999999999999877789999999999999983 56654 56999999999987
Q ss_pred chh
Q 004788 213 GAR 215 (730)
Q Consensus 213 ~~r 215 (730)
..+
T Consensus 85 ~~~ 87 (89)
T 3d2w_A 85 HNK 87 (89)
T ss_dssp ---
T ss_pred CcC
Confidence 643
No 304
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=7.9e-13 Score=124.08 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhcccccCC--CcceeeecCCCC
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKD 128 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~-AFV~F~d~e~A~kAl~~Lng~~l~G--r~L~V~~s~pk~ 128 (730)
-..|||+||++.+|+++|+++|++||+|.+|.+..+.+|+ |||+|.+.++|++|++.|+|..|.| +.|+|+|++++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4577799999999999999999999999999865566788 9999999999999999999999988 899999998764
Q ss_pred C
Q 004788 129 N 129 (730)
Q Consensus 129 ~ 129 (730)
.
T Consensus 108 l 108 (130)
T 3zzy_A 108 L 108 (130)
T ss_dssp C
T ss_pred e
Confidence 3
No 305
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=6.6e-13 Score=121.17 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=66.2
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCce-----EEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKR-----IKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~-----IkV~~A~ 210 (730)
...+|||+|||+++++++|+++|++||+|..|++... +||||+|.+.++|++||+.|||.+|+|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3568999999999999999999999999999998644 99999999999999999999999999998 7777766
Q ss_pred CC
Q 004788 211 PG 212 (730)
Q Consensus 211 pk 212 (730)
++
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 53
No 306
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.5e-13 Score=113.83 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=65.7
Q ss_pred ceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 138 GTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 138 ~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.++ ..++|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999999998865 35568999999999999999999999 9999999999987
No 307
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.3e-13 Score=122.76 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=70.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCe-EEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I-~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
....+|||+|||+++++++|+++|++||.| ..|++ ++.++|||||+|.+.++|++||+. |+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456799999999999999999999999999 66655 456789999999999999999986 999999999999999
Q ss_pred CCCchh
Q 004788 210 RPGGAR 215 (730)
Q Consensus 210 ~pk~~r 215 (730)
.++..+
T Consensus 92 ~~~~~~ 97 (114)
T 2cpy_A 92 TLEDMR 97 (114)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 765433
No 308
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.6e-13 Score=123.39 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCE-EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I-~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
+.+.++|||+|||.++++++|+++|+.||.| ..|.+ +++++|||||+|.+.++|++||+. ++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4467999999999999999999999999999 55552 467899999999999999999996 99999999999999
Q ss_pred cCCC
Q 004788 124 SIPK 127 (730)
Q Consensus 124 s~pk 127 (730)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 309
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.38 E-value=9.9e-13 Score=123.96 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=72.2
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEE--------E--EecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~--------V--ritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
....+|||+|||+++++++|+++|++||.|.. + ..++.++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34679999999999999999999999998865 3 3467889999999999999999999999999999999
Q ss_pred EEEecCCCchhh
Q 004788 205 KLEPSRPGGARR 216 (730)
Q Consensus 205 kV~~A~pk~~r~ 216 (730)
+|.++++...+.
T Consensus 123 ~V~~a~~~~~~~ 134 (143)
T 3egn_A 123 VVQFARSARPKQ 134 (143)
T ss_dssp EEEECCCSCC--
T ss_pred EEEECCCCCCcc
Confidence 999998765543
No 310
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=116.23 Aligned_cols=71 Identities=27% Similarity=0.392 Sum_probs=64.5
Q ss_pred eeEEecCCCcchHHH----HHHHHccc-CCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 139 TLVVFNLDASVSNDD----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 139 tL~V~NLp~svTeed----LreiFs~f-G~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||.|+|.|++.+.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 499999999999988 55899999 599988 33 999999999999999999999999999999999998764
Q ss_pred h
Q 004788 214 A 214 (730)
Q Consensus 214 ~ 214 (730)
.
T Consensus 86 d 86 (96)
T 2diu_A 86 E 86 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=9e-13 Score=121.01 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=69.0
Q ss_pred CCceeEE--ecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCcee-----CCceEEEEe
Q 004788 136 NQGTLVV--FNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDI-----NGKRIKLEP 208 (730)
Q Consensus 136 ~~~tL~V--~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I-----~Gr~IkV~~ 208 (730)
..++||| +||++++++++|+++|++||+|.+|.+.. .+|||||+|.+.++|++|++.|||+++ .|+.|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4678999 66999999999999999999999998753 589999999999999999999999998 789999999
Q ss_pred cCCC
Q 004788 209 SRPG 212 (730)
Q Consensus 209 A~pk 212 (730)
++.-
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8743
No 312
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.7e-13 Score=118.44 Aligned_cols=78 Identities=9% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
..+.++|||+|||+++++++|+++|++||.| .|. .+++++|||||+|.+.++|++||+ +++..|.++.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3467999999999999999999999999965 655 356789999999999999999995 8999999999999987
Q ss_pred CCCC
Q 004788 125 IPKD 128 (730)
Q Consensus 125 ~pk~ 128 (730)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 313
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=4.8e-12 Score=117.88 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=68.6
Q ss_pred CCcE--EEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhcccccCC--CcceeeecC
Q 004788 51 PSRT--LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 125 (730)
Q Consensus 51 psrt--LfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~-AFV~F~d~e~A~kAl~~Lng~~l~G--r~L~V~~s~ 125 (730)
++++ |||+||+..+++++|+++|++||.|..|.+..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4544 679999999999999999999999999985433 486 9999999999999999999999987 689999998
Q ss_pred CCCC
Q 004788 126 PKDN 129 (730)
Q Consensus 126 pk~~ 129 (730)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 314
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=2e-13 Score=121.10 Aligned_cols=80 Identities=24% Similarity=0.496 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
.+.++++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++ ++..+.|++|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4456799999999999999999999999999999873 56689999999999999999998 89999999999999
Q ss_pred cCCCCC
Q 004788 124 SIPKDN 129 (730)
Q Consensus 124 s~pk~~ 129 (730)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876654
No 315
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=4.7e-14 Score=128.40 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEE--------EE-----eCCCcccEEEEEEcCHHHHHHHHHHhcccccC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 115 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~--------V~-----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~ 115 (730)
+.++++|||+|||.++++++|+++|++||.|.. |. .+++++|||||+|.+.++|++|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457899999999999999999999999999987 54 24678999999999999999999999999999
Q ss_pred CCcceeeecCCCCCC
Q 004788 116 RRKLDIHFSIPKDNP 130 (730)
Q Consensus 116 Gr~L~V~~s~pk~~~ 130 (730)
|++|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 316
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=3.6e-13 Score=123.56 Aligned_cols=76 Identities=7% Similarity=0.116 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC---EEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~---I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
.+.++|||+|||.++++++|+++|+.||. |..|. ..++++|||||+|.+.++|++|++ +++..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45799999999999999999999999998 66655 246789999999999999999999 99999999999998
Q ss_pred ecCC
Q 004788 123 FSIP 126 (730)
Q Consensus 123 ~s~p 126 (730)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 317
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.37 E-value=4.7e-13 Score=126.52 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=69.3
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCC---eEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~---I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
....+|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34678999999999999999999999999 677654 35678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 004788 208 PSRPGG 213 (730)
Q Consensus 208 ~A~pk~ 213 (730)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 986543
No 318
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=1.4e-12 Score=119.08 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc-----ceeeec
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK-----LDIHFS 124 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~-----L~V~~s 124 (730)
...++|||+|||.++++++|+++|++||+|..|.+... |||||+|.+.++|++||+.|++..|.|++ |+|...
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 45799999999999999999999999999999986533 99999999999999999999999999999 555554
Q ss_pred CC
Q 004788 125 IP 126 (730)
Q Consensus 125 ~p 126 (730)
.+
T Consensus 92 ~~ 93 (115)
T 3beg_B 92 GP 93 (115)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 319
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.3e-12 Score=113.91 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccc--cCCCcceeeecCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIP 126 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~--l~Gr~L~V~~s~p 126 (730)
..+..+|||+|||.++++++|+++|++||.|.+|.....++|||||+|.+.++|++ +++.. +.|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 45689999999999999999999999999999999766789999999999999984 44544 4699999999877
Q ss_pred CC
Q 004788 127 KD 128 (730)
Q Consensus 127 k~ 128 (730)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 320
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=6e-13 Score=122.06 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=68.9
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCC---eEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~---I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
....+|||+|||+++++++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34678999999999999999999999998 777754 35678999999999999999999 99999999999999
Q ss_pred ecCCC
Q 004788 208 PSRPG 212 (730)
Q Consensus 208 ~A~pk 212 (730)
++.++
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 321
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.36 E-value=4.1e-13 Score=112.15 Aligned_cols=70 Identities=19% Similarity=0.456 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 54 TLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 54 tLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
+|||+|||.++++++|+++|++||+|..|.. +++++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999873 46789999999999999999999 5899999999999864
No 322
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=6.1e-13 Score=114.94 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 129 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~ 129 (730)
.++++|||+|||.++++++|+++|++||+|..|.....++|||||+|.+.++|++|+. ....+.|++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 3579999999999999999999999999999999766789999999999999986543 23456899999999887654
Q ss_pred C
Q 004788 130 P 130 (730)
Q Consensus 130 ~ 130 (730)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 323
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.4e-12 Score=111.75 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc----C-------CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~f----G-------~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
.+.++|||+|||.++++++|+++|++| | .|..+... +.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 357999999999999999999999999 8 99999865 45999999999999999999 89999999999
Q ss_pred ceeee
Q 004788 119 LDIHF 123 (730)
Q Consensus 119 L~V~~ 123 (730)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99874
No 324
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=8.9e-14 Score=126.53 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=72.6
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEE--------EEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDING 201 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~--------Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G 201 (730)
...++|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34678999999999999999999999999988 643 35668999999999999999999999999999
Q ss_pred ceEEEEecCCCchh
Q 004788 202 KRIKLEPSRPGGAR 215 (730)
Q Consensus 202 r~IkV~~A~pk~~r 215 (730)
+.|+|++++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876544
No 325
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.1e-12 Score=117.33 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=68.1
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
....+|||+|||+++++++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345799999999999999999999999955 7754 55678999999999999999995 89999999999999987
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 326
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.1e-13 Score=123.82 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=68.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEE---E--ecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEI---R--ETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~V---r--itg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...+|||+|||+++++++|+++|+.||.|..+ . .++.++|||||+|.+.++|++||+ ||+..|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 2 356778999999999999999999 99999999999999997
Q ss_pred CCc
Q 004788 211 PGG 213 (730)
Q Consensus 211 pk~ 213 (730)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 327
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.34 E-value=6.8e-13 Score=119.31 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC---EEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~---I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
...++|||+|||+++++++|+++|+.||. |..|.. .++++|||||+|.+.++|++|++ +++..+.|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 46799999999999999999999999998 777762 36789999999999999999999 99999999999999
Q ss_pred ecCC
Q 004788 123 FSIP 126 (730)
Q Consensus 123 ~s~p 126 (730)
++.+
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 8764
No 328
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=117.91 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=67.0
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
...+|||+|||+++++++|+++|+.| .|..|++ .++++|||||+|.+.++|++|| .+|+..|+||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35689999999999999999999999 8888876 3567899999999999999999 6999999999999988853
No 329
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=8.2e-13 Score=114.12 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=67.3
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCchh
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 215 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~r 215 (730)
..++|||+|||.++++++|+++|++||.|.+|++..+++|||||+|.+.++|++|+. ....+.|++|+|.+++++..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 357999999999999999999999999999999877789999999999999976432 133569999999999887644
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.33 E-value=2e-12 Score=127.25 Aligned_cols=78 Identities=22% Similarity=0.422 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
.++++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999884 36689999999999999999999999999999999999986
Q ss_pred CC
Q 004788 126 PK 127 (730)
Q Consensus 126 pk 127 (730)
+.
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 331
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=7.7e-13 Score=135.35 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccC--CeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG--~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
...+|||+||++++|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999975 567799999999999999999999999999999999999
Q ss_pred cCCCc
Q 004788 209 SRPGG 213 (730)
Q Consensus 209 A~pk~ 213 (730)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 332
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=119.20 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=69.8
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCC---eEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~---I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
....+|||+|||+++++++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ +++..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 34678999999999999999999999998 788865 35678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 004788 208 PSRPGG 213 (730)
Q Consensus 208 ~A~pk~ 213 (730)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987543
No 333
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=1.1e-12 Score=134.31 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC--CEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG--~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..++|||+|||.++++++|+++|++|| .|+.|++ +++++|||||+|.+.++|++||+.|++..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9998873 677899999999999999999999999999999999998
Q ss_pred cCC
Q 004788 124 SIP 126 (730)
Q Consensus 124 s~p 126 (730)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 334
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=7.6e-13 Score=125.10 Aligned_cols=77 Identities=6% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCC---EEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~---I~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
..+.++|||+|||+++|+++|+++|++||. |..|. ..++++|||||+|.+.++|++|++ +++..|.|+.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345799999999999999999999999998 65554 247789999999999999999999 9999999999999
Q ss_pred eecCC
Q 004788 122 HFSIP 126 (730)
Q Consensus 122 ~~s~p 126 (730)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 88753
No 335
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.33 E-value=5.8e-13 Score=111.20 Aligned_cols=70 Identities=20% Similarity=0.410 Sum_probs=64.4
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999965 35678999999999999999998 5899999999999875
No 336
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.33 E-value=4.9e-13 Score=126.89 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred cEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCCCCCCCccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe
Q 004788 90 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE 169 (730)
Q Consensus 90 G~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri 169 (730)
|+|+.+|.-.+.+..++..+... ..|....-..... ..........+|||+|||+++|+++|+++|++|| |.+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 56777887777777666654333 2222221111111 1112223456899999999999999999999999 668865
Q ss_pred ----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 170 ----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 170 ----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
.++++|||||+|.+.++|++|| .+|+..|+|+.|+|..+.++..
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3567899999999999999999 7999999999999999987654
No 337
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=2.5e-12 Score=118.84 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=70.8
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
...++|||+|+ ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..|.|+.|+|.+++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34679999996 69999999999999999999885 6789999999999999999999999999999999999998754
Q ss_pred h
Q 004788 215 R 215 (730)
Q Consensus 215 r 215 (730)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 4
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=2.6e-12 Score=118.72 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCCCC
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 128 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~pk~ 128 (730)
..++++|||+|| ++++++|+++|++||+|..|... +++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456899999996 79999999999999999998864 789999999999999999999999999999999999998764
Q ss_pred C
Q 004788 129 N 129 (730)
Q Consensus 129 ~ 129 (730)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.32 E-value=4.4e-12 Score=126.39 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHh--cccccCCCcceeeecCCCCCCCC-----CccCCceeEEecCCCcchHHHHHHHHcccCCeEEEEec
Q 004788 98 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSE-----KDVNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET 170 (730)
Q Consensus 98 d~e~A~kAl~~L--ng~~l~Gr~L~V~~s~pk~~~~~-----~~~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit 170 (730)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||.++++++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888866 44456666666655422222211 22345799999999999999999999999999999763
Q ss_pred ----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCc
Q 004788 171 ----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 213 (730)
Q Consensus 171 ----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~ 213 (730)
+..+|||||+|.+.++|++|++.+ +..++|+.|+|.+++.-.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 567899999999999999999755 469999999999987543
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3.6e-12 Score=109.26 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=65.8
Q ss_pred CCceeEEecCCCcchHHHHHHHHccc----C-------CeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~f----G-------~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
..++|||+|||.++++++|+++|++| | .|.++++. ..+|||||+|.+.++|++|+ .|||..+.|+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45799999999999999999999999 8 89999875 44899999999999999999 999999999999
Q ss_pred EEEe
Q 004788 205 KLEP 208 (730)
Q Consensus 205 kV~~ 208 (730)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 341
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=5.3e-12 Score=130.11 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=78.9
Q ss_pred cccccCCCcceeeecCCCCCCCCCccCCceeEEecCCCcc---------hHHHHHHHHcccCCeEEEEecCCCccEEEEE
Q 004788 110 QNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASV---------SNDDLRQIFGAYGEVKEIRETPHKRHHKFIE 180 (730)
Q Consensus 110 ng~~l~Gr~L~V~~s~pk~~~~~~~~~~~tL~V~NLp~sv---------TeedLreiFs~fG~I~~Vritg~skG~AFVe 180 (730)
+...+.|+.....+..............++|||+||+..+ ++++|+++|++||+|.+|++. .++|||||+
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~ 185 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVK 185 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEE
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEE
Confidence 3455557765554443322222234457899999999998 899999999999999999886 468999999
Q ss_pred EcCHHHHHHHHHHhCCcee------------CCceEEEEecCCCchh
Q 004788 181 FYDVRAAEAALRALNRSDI------------NGKRIKLEPSRPGGAR 215 (730)
Q Consensus 181 F~d~e~A~kAL~~LnG~~I------------~Gr~IkV~~A~pk~~r 215 (730)
|.+.++|++|+++|+|..| .|+.|.|.||++....
T Consensus 186 F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999999999999999999 8999999999876543
No 342
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=118.37 Aligned_cols=74 Identities=8% Similarity=0.156 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
+.++|||+|||.++++++|+++|+.| .|..|.+ .++++|||||+|.+.++|++|+ .+++..|.||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 46899999999999999999999999 7888873 4678999999999999999999 5999999999999977643
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=1.3e-12 Score=123.88 Aligned_cols=79 Identities=9% Similarity=0.182 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 48 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
.....++|||+|||+++++++|+++|++|| |..|.+ .++++|||||+|.+.++|++|| .+++..|.|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 557762 4678999999999999999999 6999999999999998
Q ss_pred cCCCC
Q 004788 124 SIPKD 128 (730)
Q Consensus 124 s~pk~ 128 (730)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 344
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.30 E-value=1.5e-12 Score=115.44 Aligned_cols=78 Identities=24% Similarity=0.481 Sum_probs=70.0
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
...++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34679999999999999999999999999999976 45578999999999999999998 9999999999999997
Q ss_pred CCch
Q 004788 211 PGGA 214 (730)
Q Consensus 211 pk~~ 214 (730)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 345
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=5.6e-12 Score=124.03 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=71.9
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
...+|||+|||.++++++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|||..|+|+.|+|+++.+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45799999999999999999999999999999763 55689999999999999999999999999999999999986
Q ss_pred Cc
Q 004788 212 GG 213 (730)
Q Consensus 212 k~ 213 (730)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 346
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=3.9e-12 Score=118.72 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEE--EEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--TLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~--~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
..+.++|||+|||+++++++|+++|++| .|. .|. ..++++|||||+|.+.++|++|++ +++..|.||.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 3457899999999999999999999999 566 776 246789999999999999999998 57899999999998
Q ss_pred ecCC
Q 004788 123 FSIP 126 (730)
Q Consensus 123 ~s~p 126 (730)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 347
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.7e-11 Score=111.14 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHhhccCCEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcccccC
Q 004788 48 GEHPSRTLFVRNINSNVE-----------DLELRSLFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLR 115 (730)
Q Consensus 48 ~e~psrtLfV~NLP~~vt-----------eedL~~lF~~fG~I~~V~~-~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~ 115 (730)
...++++|+|+||....+ +++|+++|++||.|..|.+ ....+|||||+|.+.++|++|++.|+|..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456799999999954432 6899999999999999874 4457999999999999999999999999999
Q ss_pred CCcceeeecCCCCCC
Q 004788 116 RRKLDIHFSIPKDNP 130 (730)
Q Consensus 116 Gr~L~V~~s~pk~~~ 130 (730)
|++|.|.++.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876543
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7.3e-12 Score=113.80 Aligned_cols=71 Identities=13% Similarity=0.269 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----C---CCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~---~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
..+++|||+|||.++++++|+++|++||+|. +.. + ++++|||||+|.+.++|++|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4579999999999999999999999999999 552 2 57899999999999999999998843 56666666
Q ss_pred ee
Q 004788 122 HF 123 (730)
Q Consensus 122 ~~ 123 (730)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.26 E-value=8.2e-12 Score=128.71 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhccccc-----
Q 004788 49 EHPSRTLFVRNINSNV---------EDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 114 (730)
Q Consensus 49 e~psrtLfV~NLP~~v---------teedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l----- 114 (730)
....++|||+||+.++ +|++|+++|++||+|..|.+. ..+|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4578999999999998 799999999999999999854 5799999999999999999999999999
Q ss_pred -------CCCcceeeecCCCCCC
Q 004788 115 -------RRRKLDIHFSIPKDNP 130 (730)
Q Consensus 115 -------~Gr~L~V~~s~pk~~~ 130 (730)
.|+.|.|.|+....++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=119.65 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=66.6
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCe----EEEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I----~~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|+|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35689999999999999999999999975 45543 567789999999999999999985 9999999999999
Q ss_pred ecCCC
Q 004788 208 PSRPG 212 (730)
Q Consensus 208 ~A~pk 212 (730)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 351
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=119.44 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCE----EEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCccee
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 121 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I----~~V~----~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V 121 (730)
.+.++|||+|||+++|+++|+++|++||.| ..|. .+++++|||||+|.+.++|++|++. ++..|.+|.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457999999999999999999999999975 2333 3677899999999999999999995 999999999999
Q ss_pred eecC
Q 004788 122 HFSI 125 (730)
Q Consensus 122 ~~s~ 125 (730)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3.1e-11 Score=109.42 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=69.1
Q ss_pred cCCceeEEecCCCcc-----------hHHHHHHHHcccCCeEEEEe-cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 004788 135 VNQGTLVVFNLDASV-----------SNDDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALRALNRSDINGK 202 (730)
Q Consensus 135 ~~~~tL~V~NLp~sv-----------TeedLreiFs~fG~I~~Vri-tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr 202 (730)
...++|+|.||-... ++++|+++|++||.|..|.+ +..++|||||+|.+.++|++|++.|||..|+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 457799999994332 26899999999999999976 345789999999999999999999999999999
Q ss_pred eEEEEecCCCch
Q 004788 203 RIKLEPSRPGGA 214 (730)
Q Consensus 203 ~IkV~~A~pk~~ 214 (730)
.|+|.++.++..
T Consensus 93 ~l~v~~a~~~~~ 104 (112)
T 2dit_A 93 QITAQAWDGTTD 104 (112)
T ss_dssp ECEEEECCSCCC
T ss_pred EEEEEEeCCCCC
Confidence 999999987643
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=2.8e-11 Score=109.24 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCceeEEecCCC-----cchHHHHHHHHcccCCeEEEEec------CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 136 NQGTLVVFNLDA-----SVSNDDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 136 ~~~tL~V~NLp~-----svTeedLreiFs~fG~I~~Vrit------g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
..++|+|.|+-. +-++++|+++|++||.|.+|++. ++++|+|||+|.+.++|.+|++.|||+.++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467899999962 23689999999999999999752 3568999999999999999999999999999999
Q ss_pred EEEecCC
Q 004788 205 KLEPSRP 211 (730)
Q Consensus 205 kV~~A~p 211 (730)
+|.++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999975
No 354
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.23 E-value=6.4e-12 Score=117.29 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeE--EEEe----cCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVK--EIRE----TPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEP 208 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~--~Vri----tg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~ 208 (730)
....+|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++||+ +++..|+||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 566 7764 35678999999999999999998 578999999999998
Q ss_pred cCCC
Q 004788 209 SRPG 212 (730)
Q Consensus 209 A~pk 212 (730)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 355
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.22 E-value=1.8e-11 Score=136.67 Aligned_cols=80 Identities=26% Similarity=0.453 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~-----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~ 123 (730)
..+.++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+||+.|+|..|.|++|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999874 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 004788 124 SIPKD 128 (730)
Q Consensus 124 s~pk~ 128 (730)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 87643
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=110.41 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=66.0
Q ss_pred CCceeEEecCCCcchHHHHHHHHcccCCeEEEEe-----c---CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRE-----T---PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLE 207 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vri-----t---g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~ 207 (730)
..++|||+|||+++++++|+++|++||.|. +.+ + +.++|||||+|.+.++|++|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 543 2 4678999999999999999999984 5889999888
Q ss_pred ecCCCchh
Q 004788 208 PSRPGGAR 215 (730)
Q Consensus 208 ~A~pk~~r 215 (730)
.+.+...+
T Consensus 84 ~~~~~~~~ 91 (114)
T 2dnl_A 84 SSPTIKDK 91 (114)
T ss_dssp CCSSSCSE
T ss_pred cCCCcCCC
Confidence 77655443
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=3.1e-11 Score=108.91 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCC-----CCcHHHHHHHhhccCCEEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 49 EHPSRTLFVRNINS-----NVEDLELRSLFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 49 e~psrtLfV~NLP~-----~vteedL~~lF~~fG~I~~V~~------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
..++++|+|+||.. +-++++|+++|++||.|.+|.+ .++++|||||+|.+.++|++|++.|+|..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34789999999963 2378999999999999999873 146799999999999999999999999999999
Q ss_pred cceeeecCC
Q 004788 118 KLDIHFSIP 126 (730)
Q Consensus 118 ~L~V~~s~p 126 (730)
+|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.6e-11 Score=111.54 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=67.9
Q ss_pred ceeEEecC----CCcchHHHHHHHHcccCCeEEEEe-----cCCCccEEEEEEcC----HHH----HHHHHH--HhCCce
Q 004788 138 GTLVVFNL----DASVSNDDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALR--ALNRSD 198 (730)
Q Consensus 138 ~tL~V~NL----p~svTeedLreiFs~fG~I~~Vri-----tg~skG~AFVeF~d----~e~----A~kAL~--~LnG~~ 198 (730)
..|||+|| |+.+++++|+++|+.||+|.++++ ++.++|||||+|.| .++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999954 77889999999996 333 899988 789999
Q ss_pred eCCceEEEEecCCCch
Q 004788 199 INGKRIKLEPSRPGGA 214 (730)
Q Consensus 199 I~Gr~IkV~~A~pk~~ 214 (730)
|+|++|+|.+-+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999988765
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1.8e-10 Score=103.82 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=65.3
Q ss_pred CCceeEEecC--CCcc--------hHHHHHHHHcccCCeEEEEecC-------CCccEEEEEEcCHHHHHHHHHHhCCce
Q 004788 136 NQGTLVVFNL--DASV--------SNDDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALRALNRSD 198 (730)
Q Consensus 136 ~~~tL~V~NL--p~sv--------TeedLreiFs~fG~I~~Vritg-------~skG~AFVeF~d~e~A~kAL~~LnG~~ 198 (730)
+++.|+|.|+ +.++ .+++|++.|++||.|.+|++.. .++|++||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4668999998 3333 3479999999999999998632 458999999999999999999999999
Q ss_pred eCCceEEEEecCC
Q 004788 199 INGKRIKLEPSRP 211 (730)
Q Consensus 199 I~Gr~IkV~~A~p 211 (730)
++||.|+|+|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.12 E-value=8.9e-11 Score=116.92 Aligned_cols=75 Identities=12% Similarity=0.299 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.+ +..+.|++|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999873 4678999999999999999999855 5689999999998654
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.08 E-value=1.9e-10 Score=103.75 Aligned_cols=78 Identities=17% Similarity=0.358 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCC--CCCCc--------HHHHHHHhhccCCEEEEEeC-------CCcccEEEEEEcCHHHHHHHHHHhcc
Q 004788 49 EHPSRTLFVRNI--NSNVE--------DLELRSLFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQN 111 (730)
Q Consensus 49 e~psrtLfV~NL--P~~vt--------eedL~~lF~~fG~I~~V~~~-------~ksrG~AFV~F~d~e~A~kAl~~Lng 111 (730)
..|++.|.|+|+ |.++. +++|++.|++||+|.+|.+. .+++|+|||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357999999998 43443 47999999999999999842 24689999999999999999999999
Q ss_pred cccCCCcceeeecCC
Q 004788 112 KPLRRRKLDIHFSIP 126 (730)
Q Consensus 112 ~~l~Gr~L~V~~s~p 126 (730)
+.+.||+|.|.|...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998753
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.2e-10 Score=101.53 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=59.8
Q ss_pred CcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCCch
Q 004788 147 ASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 214 (730)
Q Consensus 147 ~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk~~ 214 (730)
.++++++|+++|++||+|.+|++.++++|||||+|.+.++|++|++.++ .+.|+.|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 5789999999999999999999988889999999999999999999754 47899999999987654
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.08 E-value=5.5e-11 Score=110.99 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=64.2
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhccCCEEEEE-----eCCCcccEEEEEEcC----HHH----HHHHHH--Hhcccc
Q 004788 53 RTLFVRNI----NSNVEDLELRSLFEQYGDIRTLY-----TACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 113 (730)
Q Consensus 53 rtLfV~NL----P~~vteedL~~lF~~fG~I~~V~-----~~~ksrG~AFV~F~d----~e~----A~kAl~--~Lng~~ 113 (730)
..|||+|| |+.+++++|+++|+.||+|.+|. .+++++|||||+|.| +++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999887 478899999999996 333 888988 789999
Q ss_pred cCCCcceeeec
Q 004788 114 LRRRKLDIHFS 124 (730)
Q Consensus 114 l~Gr~L~V~~s 124 (730)
|.|++|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999875
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.8e-10 Score=98.40 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=65.2
Q ss_pred CcEEEEcCCC-------CCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeec
Q 004788 52 SRTLFVRNIN-------SNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 124 (730)
Q Consensus 52 srtLfV~NLP-------~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s 124 (730)
.++|.|.-.. .++++++|+++|++||+|..|.+.++++|||||+|.+.++|++|++.+++ +.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4677776554 46899999999999999999997788999999999999999999997544 67999999998
Q ss_pred CCCCC
Q 004788 125 IPKDN 129 (730)
Q Consensus 125 ~pk~~ 129 (730)
.++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 76543
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=1.2e-10 Score=104.88 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=59.4
Q ss_pred EecCCCcchHHHHHHHH------------cccCCeEEEEec----CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 142 VFNLDASVSNDDLRQIF------------GAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 142 V~NLp~svTeedLreiF------------s~fG~I~~Vrit----g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
+.||+..+++++|++.| ++||.|.+|++. ++++|||||+|.+.++|.+|++.|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777788887777666 999999999874 34589999999999999999999999999999999
Q ss_pred EEec
Q 004788 206 LEPS 209 (730)
Q Consensus 206 V~~A 209 (730)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=4.5e-10 Score=121.49 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccC---CC--cce
Q 004788 48 GEHPSRTLFVRN--INSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLD 120 (730)
Q Consensus 48 ~e~psrtLfV~N--LP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~---Gr--~L~ 120 (730)
...|+++|||+| |+..+||++|+++|++||+|..|.+. ..||||||+|.+.++|++|+++|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356899999999 57899999999999999999999864 47899999999999999999999998873 44 466
Q ss_pred eeec
Q 004788 121 IHFS 124 (730)
Q Consensus 121 V~~s 124 (730)
|.|.
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6665
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.00 E-value=6.4e-10 Score=120.25 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=66.0
Q ss_pred cCCceeEEec--CCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeC---Cc--eEEEE
Q 004788 135 VNQGTLVVFN--LDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDIN---GK--RIKLE 207 (730)
Q Consensus 135 ~~~~tL~V~N--Lp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~---Gr--~IkV~ 207 (730)
....+|||+| |+..+|+++|+++|++||+|++|.+.. .||||||+|.+.++|++|++.|||+++. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 4567999999 578999999999999999999998754 6899999999999999999999999883 44 67888
Q ss_pred ecC
Q 004788 208 PSR 210 (730)
Q Consensus 208 ~A~ 210 (730)
|..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=9e-10 Score=101.52 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=64.3
Q ss_pred CCceeEEecCCC--cc---hHHHHHHHHcccCCeEEEEec---------CCCccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 004788 136 NQGTLVVFNLDA--SV---SNDDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALRALNRSDING 201 (730)
Q Consensus 136 ~~~tL~V~NLp~--sv---TeedLreiFs~fG~I~~Vrit---------g~skG~AFVeF~d~e~A~kAL~~LnG~~I~G 201 (730)
..++|+|.|+-. ++ .+++|++.|++||.|.+|++. ++.+|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 466899999832 22 368999999999999998652 2346999999999999999999999999999
Q ss_pred ceEEEEecCC
Q 004788 202 KRIKLEPSRP 211 (730)
Q Consensus 202 r~IkV~~A~p 211 (730)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=1.5e-09 Score=99.53 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCceeEEecCCC--c--------chHHHHHHHHcccCCeEEEEecCC-CccEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 004788 136 NQGTLVVFNLDA--S--------VSNDDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALRALNRSDINGKRI 204 (730)
Q Consensus 136 ~~~tL~V~NLp~--s--------vTeedLreiFs~fG~I~~Vritg~-skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~I 204 (730)
..+.|.|.|+=. + -.+++|++.|++||.|.+|.+... .+|++||+|.+.++|.+|++.|||+.++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 456788888722 1 234689999999999999987443 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 004788 205 KLEPSRP 211 (730)
Q Consensus 205 kV~~A~p 211 (730)
+|+|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999864
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.96 E-value=2.4e-10 Score=102.75 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=58.3
Q ss_pred EcCCCCCCcHHHHHHHh------------hccCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 57 VRNINSNVEDLELRSLF------------EQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 57 V~NLP~~vteedL~~lF------------~~fG~I~~V~~----~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
+.+|+.++++++|++.| ++||+|.+|.. .++++|||||+|.+.++|++|++.|+|..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777777666 99999999984 245799999999999999999999999999999999
Q ss_pred eeec
Q 004788 121 IHFS 124 (730)
Q Consensus 121 V~~s 124 (730)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.92 E-value=1.8e-09 Score=99.54 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCC--C---CcHHHHHHHhhccCCEEEEEe---------CCCcccEEEEEEcCHHHHHHHHHHhcccccCC
Q 004788 51 PSRTLFVRNINS--N---VEDLELRSLFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 116 (730)
Q Consensus 51 psrtLfV~NLP~--~---vteedL~~lF~~fG~I~~V~~---------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G 116 (730)
++++|+|+|+-. + --++||++.|++||+|.+|.+ +++.+|+|||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999842 2 237899999999999999872 12467999999999999999999999999999
Q ss_pred CcceeeecCC
Q 004788 117 RKLDIHFSIP 126 (730)
Q Consensus 117 r~L~V~~s~p 126 (730)
|.|.|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998743
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=3.8e-09 Score=96.79 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCc----------HHHHHHHhhccCCEEEEEeCC-CcccEEEEEEcCHHHHHHHHHHhcccccCCCc
Q 004788 50 HPSRTLFVRNINSNVE----------DLELRSLFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKPLRRRK 118 (730)
Q Consensus 50 ~psrtLfV~NLP~~vt----------eedL~~lF~~fG~I~~V~~~~-ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~ 118 (730)
.+++.|.|+|+=..-. ++||++.|++||.|.+|.+.. ..+|+|||+|.+.++|++|++.|||+.+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4789999999843222 457899999999999998543 35899999999999999999999999999999
Q ss_pred ceeeecC
Q 004788 119 LDIHFSI 125 (730)
Q Consensus 119 L~V~~s~ 125 (730)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999874
No 373
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.85 E-value=6.8e-09 Score=91.33 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=73.1
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhcCCCceeEEE-ecccccccce-eEEEEEeccChHHHHHHHHHHcCCcccCC-CCccE
Q 004788 571 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLY-LPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF-NSEKV 647 (730)
Q Consensus 571 TTvMirNIPnk~~~~~l~~~id~~~~g~yDf~Y-lp~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~~-~s~K~ 647 (730)
|.|+||++|+.+|++.++++|+.. .++||+| .|-+...+-+ -+.|||||++++++..|.+.|+|+.|..- +.+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999975 4789885 6888776544 58899999999999999999999999965 34678
Q ss_pred EEEEeeecc
Q 004788 648 ASLAYARIQ 656 (730)
Q Consensus 648 ~~v~yA~iQ 656 (730)
+.|.||-.|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999877
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=3.3e-08 Score=86.66 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=62.9
Q ss_pred cCCceeEEecCCC----cchH----HHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEE
Q 004788 135 VNQGTLVVFNLDA----SVSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKL 206 (730)
Q Consensus 135 ~~~~tL~V~NLp~----svTe----edLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV 206 (730)
....||+|.-.+. .+-. .+|.+.|.+||+|..+|+... .+||+|.+.++|.+|++ |||.++.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 3456888887662 2323 679999999999999998643 38999999999999998 9999999999999
Q ss_pred EecCCCc
Q 004788 207 EPSRPGG 213 (730)
Q Consensus 207 ~~A~pk~ 213 (730)
.++++.-
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9998764
No 375
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.70 E-value=7.7e-09 Score=91.67 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=71.9
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhcCCCceeEE-Eecccccccce-eEEEEEeccChHHHHHHHHHHcCCcccCC-CCccE
Q 004788 571 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF-NSEKV 647 (730)
Q Consensus 571 TTvMirNIPnk~~~~~l~~~id~~~~g~yDf~-Ylp~df~~~~n-~gyaFinf~~~~~~~~f~~~f~g~~w~~~-~s~K~ 647 (730)
-.|+||++|+.+|++.++++|+.... .||+ |.|-|...+-+ -..|||||+++++|..|.+.|+|+.|..- +.+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 57999999999999999999997554 5777 58888877554 47899999999999999999999999965 45678
Q ss_pred EEEEeeecc
Q 004788 648 ASLAYARIQ 656 (730)
Q Consensus 648 ~~v~yA~iQ 656 (730)
+.|.||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 899999877
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=7.8e-08 Score=88.97 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred CCceeEEecCCCc-chHHHHHHHHcccCCeEEEEecCCCccEEEEEEcC-HHHHHHHHHHhC--CceeCCceEEEEecCC
Q 004788 136 NQGTLVVFNLDAS-VSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALRALN--RSDINGKRIKLEPSRP 211 (730)
Q Consensus 136 ~~~tL~V~NLp~s-vTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d-~e~A~kAL~~Ln--G~~I~Gr~IkV~~A~p 211 (730)
....|+|+||+.+ ++.++|+++|++||+|..|++.... ..|||+|.+ .++|.+|++.|+ +..|.|..++++...
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~- 94 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE- 94 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC-
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC-
Confidence 3558999999999 9999999999999999999985443 479999999 899999999994 778999999998776
Q ss_pred Cchhhhhhhhchh
Q 004788 212 GGARRNLMQQLNQ 224 (730)
Q Consensus 212 k~~r~~~~~ql~~ 224 (730)
+...+.++..+.+
T Consensus 95 GeeE~~yw~Ki~e 107 (121)
T 1owx_A 95 GEVEKEALKKIIE 107 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3344456665544
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.2e-07 Score=83.70 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=61.7
Q ss_pred cCCceeEEecCCCc-----chH----HHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 004788 135 VNQGTLVVFNLDAS-----VSN----DDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIK 205 (730)
Q Consensus 135 ~~~~tL~V~NLp~s-----vTe----edLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~Ik 205 (730)
....||+|.-++.+ +-. .+|.+.|.+||+|..+|+.... +||+|.+.++|.+||+ |||.+++||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45679999988643 222 5699999999999999986443 9999999999999998 999999999999
Q ss_pred EEecCC
Q 004788 206 LEPSRP 211 (730)
Q Consensus 206 V~~A~p 211 (730)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998765
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=5e-07 Score=83.59 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcC-HHHHHHHHHHhc--ccccCCCcceeee
Q 004788 49 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHF 123 (730)
Q Consensus 49 e~psrtLfV~NLP~~-vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d-~e~A~kAl~~Ln--g~~l~Gr~L~V~~ 123 (730)
-.+.+.|||+||+.+ +++++|+++|++||+|..|... .....|||.|.+ .++|.+|++.++ +..|.|..+.+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 346899999999999 9999999999999999999843 234479999999 899999999984 6778887766654
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=6.2e-07 Score=78.66 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=60.9
Q ss_pred CCcEEEEcCCC----CCCcH----HHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 51 PSRTLFVRNIN----SNVED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 51 psrtLfV~NLP----~~vte----edL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
|..||+|.-.+ .++-+ .+|.+.|.+||+|..++... +.+||+|.+.++|.+|++ |+|..+.||.|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 67899998876 23434 67889999999999998543 238999999999999998 99999999999999
Q ss_pred ecCC
Q 004788 123 FSIP 126 (730)
Q Consensus 123 ~s~p 126 (730)
++.+
T Consensus 82 lkt~ 85 (91)
T 2dnr_A 82 LKSP 85 (91)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8765
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.37 E-value=4.9e-07 Score=90.92 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=56.6
Q ss_pred chHHHHHHHHcccCCeEEEEec---------CCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 149 VSNDDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 149 vTeedLreiFs~fG~I~~Vrit---------g~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
-.+++|++.|++||.|.++.+. ++.+|++||+|.+.++|.+|++.|||+.++||.|+|.|+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999999652 26789999999999999999999999999999999999863
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.15 E-value=3.2e-06 Score=84.91 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred CcEEEEcCCC-----CCCcHHHHHHHhhccCCEEEEEe---------CCCcccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 52 SRTLFVRNIN-----SNVEDLELRSLFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 52 srtLfV~NLP-----~~vteedL~~lF~~fG~I~~V~~---------~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
++.+.+.|+- .+-.+++|++.|++||.|.++.+ +++.+|++||+|.+.++|++|++.|+|+.+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445554442 23457899999999999999873 226889999999999999999999999999999
Q ss_pred cceeeecC
Q 004788 118 KLDIHFSI 125 (730)
Q Consensus 118 ~L~V~~s~ 125 (730)
.|.+.|..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=6e-06 Score=74.46 Aligned_cols=73 Identities=23% Similarity=0.255 Sum_probs=66.1
Q ss_pred CCceeEEecCCCcchHHHHHHHHccc-----CCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 004788 136 NQGTLVVFNLDASVSNDDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPS 209 (730)
Q Consensus 136 ~~~tL~V~NLp~svTeedLreiFs~f-----G~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A 209 (730)
..++|-+-|||..+++..|+.+.++| |.|+.|.+.++. +=|+|+|.|...|.+|.-+|+|.+|+|++|+|.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 35789999999999999999999999 999999876665 45999999999999999999999999999998643
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=2.8e-06 Score=74.94 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCcEEEEcCCCCC-----CcH----HHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcce
Q 004788 50 HPSRTLFVRNINSN-----VED----LELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 120 (730)
Q Consensus 50 ~psrtLfV~NLP~~-----vte----edL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~ 120 (730)
.|..||+|.-++.+ +-+ .+|.+.|.+||+|..++..... +||+|.+.++|.+||+ |+|..+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 36799999988743 222 5688999999999888843222 9999999999999999 999999999999
Q ss_pred eeecC
Q 004788 121 IHFSI 125 (730)
Q Consensus 121 V~~s~ 125 (730)
|.+..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98754
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00035 Score=62.38 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc-----cCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecC
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 125 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~-----fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~ 125 (730)
-.++|.|.|||++++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++ -....|.+..|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 3589999999999999999999997 25899998543 889999999999999987 34678889999997655
Q ss_pred CCCCCCCCccCCceeEEecCCCcch
Q 004788 126 PKDNPSEKDVNQGTLVVFNLDASVS 150 (730)
Q Consensus 126 pk~~~~~~~~~~~tL~V~NLp~svT 150 (730)
+++ ..+|.+.+|+++++
T Consensus 83 ~~~--------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PRA--------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCSCCCCCC
T ss_pred CCC--------cceEeeecCCCCCC
Confidence 433 44799999998765
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=9.6e-05 Score=66.70 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcc-----CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceee
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 122 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~f-----G~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~ 122 (730)
..|+|-+-|||..+++..|+.+.+++ |+|+.|.... ..+=|+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 36999999999999999999999999 9999988543 34569999999999999998899999999999875
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.00037 Score=62.25 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=70.9
Q ss_pred CceeEEecCCCcchHHHHHHHHccc-----CCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRP 211 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~f-----G~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~p 211 (730)
..+|.|.|||++++++.|.-+|+.- |+|..++..+ +-|+|+|.+.+.|+++|+ -..+.|.+..|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 4589999999999999999999972 6899998765 679999999999999997 237799999999999999
Q ss_pred Cchhhhhhhhc
Q 004788 212 GGARRNLMQQL 222 (730)
Q Consensus 212 k~~r~~~~~ql 222 (730)
+..++-+++.+
T Consensus 84 ~~~~r~ll~gl 94 (104)
T 2dhx_A 84 RAPARLLLQGL 94 (104)
T ss_dssp CCCCCCCCCSC
T ss_pred CCcceEeeecC
Confidence 88888766554
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00059 Score=61.12 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=62.5
Q ss_pred ceeEEecCCCcc-h----HHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecCCC
Q 004788 138 GTLVVFNLDASV-S----NDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 212 (730)
Q Consensus 138 ~tL~V~NLp~sv-T----eedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~pk 212 (730)
++|+|.||+.++ . .+.++++|..|+++.....-+.- .-..|.|.+.++|.+|...|++..+.|++|+|-|+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 589999998876 2 25778999999988777554332 34789999999999999999999999999999999854
Q ss_pred c
Q 004788 213 G 213 (730)
Q Consensus 213 ~ 213 (730)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0013 Score=58.91 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCCCcceeeecCC
Q 004788 52 SRTLFVRNINSNV-E----DLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 126 (730)
Q Consensus 52 srtLfV~NLP~~v-t----eedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~Gr~L~V~~s~p 126 (730)
..+|+|.||+.+| . .+.++++|..|+++.....- ++-+-..|.|.+.++|.+|-..|++..+.|++|+|.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999999765 2 36789999999998876633 3444578999999999999999999999999999999875
Q ss_pred C
Q 004788 127 K 127 (730)
Q Consensus 127 k 127 (730)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.55 E-value=0.0099 Score=54.54 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred cCCceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCC-ceEEEEecCC
Q 004788 135 VNQGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDING-KRIKLEPSRP 211 (730)
Q Consensus 135 ~~~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~G-r~IkV~~A~p 211 (730)
....-|.|.+.+... ...|.+.|++||+|.+.... ....+..|+|.+..+|++||. .||..|+| ..|-|.+...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 346689999999885 56677889999999998873 456899999999999999998 59999985 6677777643
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.25 E-value=0.0087 Score=52.44 Aligned_cols=65 Identities=5% Similarity=0.037 Sum_probs=53.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-eCCC------cccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~-~~~k------srG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
++|.|++||+.+||+++.+.+..+.++...+ ..++ .-.-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999998766544 1111 234699999999999999999999887543
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.60 E-value=0.036 Score=49.04 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 110 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Ln 110 (730)
.+.++| ++|+++...||.++|+.||.|.--++ ....|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 577778 99999999999999999985433222 24579999999999999999764
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.02 E-value=0.057 Score=49.49 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcccccCC-Ccceeeec
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHFS 124 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Lng~~l~G-r~L~V~~s 124 (730)
..+-|.|-++|+.. ...|...|++||+|.+... .....+..|.|.+..+|++||. .||+.+.+ ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 46899999999885 6778889999999998875 2456899999999999999999 69988874 44555543
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.62 E-value=0.076 Score=46.96 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=44.2
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 195 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~Ln 195 (730)
...++| ++|+.+...||.++|+.||.|.--.++ ...|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999865433333 2469999999999999998763
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.36 E-value=0.037 Score=49.08 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=44.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc
Q 004788 53 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 110 (730)
Q Consensus 53 rtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Ln 110 (730)
+.++| ++|+++...||.++|+.||.|.--++ ....|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 56677 99999999999999999995443332 34689999999999999999764
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.20 E-value=0.055 Score=50.35 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=56.0
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEE-Eec----------------C--CCccEEEEEEcCHHHHHHHHHHhCCc
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEI-RET----------------P--HKRHHKFIEFYDVRAAEAALRALNRS 197 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~V-rit----------------g--~skG~AFVeF~d~e~A~kAL~~LnG~ 197 (730)
+.-|.|.+.|++.+. .+.+.|++||.|.+- ... + ...++..|+|++..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 446889999876665 456679999999772 111 1 125678999999999999998 6999
Q ss_pred eeCCceEEEEecC
Q 004788 198 DINGKRIKLEPSR 210 (730)
Q Consensus 198 ~I~Gr~IkV~~A~ 210 (730)
.|+|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999999998885
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.16 E-value=0.043 Score=48.55 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-eCCC------cccEEEEEEcCHHHHHHHHHHhcccccCCC
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRRR 117 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-~~~k------srG~AFV~F~d~e~A~kAl~~Lng~~l~Gr 117 (730)
+.+-+|.|+.||+.+||+++.+.+..+-++...+ ..++ .-.-|||.|.+.++.....+.++|..+.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3578999999999999999998888765543222 1111 223599999999999999999999887543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.49 E-value=0.028 Score=62.88 Aligned_cols=57 Identities=9% Similarity=0.255 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 004788 50 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 107 (730)
Q Consensus 50 ~psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~ 107 (730)
...|+|+|. .|..+++++|.++|.+||+|.++.......-||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 346999997 799999999999999999999998765666799999999999997765
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.80 E-value=0.05 Score=60.85 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=43.3
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHH
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALR 192 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~ 192 (730)
.++|+|. .+..+++.+|.++|++||.|..+........||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 5689998 799999999999999999999998776677899999999999987765
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.79 E-value=0.085 Score=46.77 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=43.6
Q ss_pred eeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhC
Q 004788 139 TLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALN 195 (730)
Q Consensus 139 tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~Ln 195 (730)
.++| ++|+.+...||.++|+.||.|.--.++ ...|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 4666 999999999999999999955433343 2469999999999999999764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.09 E-value=0.15 Score=47.34 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCEEEEE-eC-------------C-----CcccEEEEEEcCHHHHHHHHHHhcc
Q 004788 51 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TA-------------C-----KHRGFVMISYYDIRAARTAMRALQN 111 (730)
Q Consensus 51 psrtLfV~NLP~~vteedL~~lF~~fG~I~~V~-~~-------------~-----ksrG~AFV~F~d~e~A~kAl~~Lng 111 (730)
....|.|-+.|++. ...+.+.|++||.|.+-. .. . ....+..|+|.+..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 35677888886554 556678999999987632 11 0 135688999999999999999 799
Q ss_pred cccCCCcceeeec
Q 004788 112 KPLRRRKLDIHFS 124 (730)
Q Consensus 112 ~~l~Gr~L~V~~s 124 (730)
+.|.|..|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987777655
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.83 E-value=5.8 Score=44.69 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=46.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc
Q 004788 52 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 110 (730)
Q Consensus 52 srtLfV~NLP~~vteedL~~lF~~fG~I~~V~~~~ksrG~AFV~F~d~e~A~kAl~~Ln 110 (730)
...++|+ +|+.+...+|.++|+.||.|.-.+. ....|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 4688887 9999999999999999997655443 45679999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.89 E-value=12 Score=42.05 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=45.5
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR 196 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG 196 (730)
...++|+ ++..+...+|.++|+.||.|.-..++ ...|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHHh
Confidence 3456666 88999999999999999976544554 34699999999999999998853
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.54 E-value=3e+02 Score=23.74 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=58.7
Q ss_pred CceeEEecCCCcchHHHHHHHHcccCCeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCC-------ceeCCceEEEEec
Q 004788 137 QGTLVVFNLDASVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALRALNR-------SDINGKRIKLEPS 209 (730)
Q Consensus 137 ~~tL~V~NLp~svTeedLreiFs~fG~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG-------~~I~Gr~IkV~~A 209 (730)
..-+.|-|+|..+-..++.-.....|---.++.. .|.|.|+|.+.++..-|+..|-. .+|.|....|--.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvist 88 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVIST 88 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECC
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeec
Confidence 4467889999999888888777777766666543 46799999999999999988721 1567777777666
Q ss_pred CCCchhhhh
Q 004788 210 RPGGARRNL 218 (730)
Q Consensus 210 ~pk~~r~~~ 218 (730)
-|..+.+.+
T Consensus 89 ipedeekny 97 (129)
T 4eyt_A 89 IPEDEEKNY 97 (129)
T ss_dssp CCHHHHHHH
T ss_pred CCchhhhch
Confidence 666655543
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.66 E-value=77 Score=25.52 Aligned_cols=59 Identities=12% Similarity=0.317 Sum_probs=38.2
Q ss_pred cchHHHHHHHHcccC-----CeEEEEecCCCccEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecC
Q 004788 148 SVSNDDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALRALNRSDINGKRIKLEPSR 210 (730)
Q Consensus 148 svTeedLreiFs~fG-----~I~~Vritg~skG~AFVeF~d~e~A~kAL~~LnG~~I~Gr~IkV~~A~ 210 (730)
.+...+|..++..-+ .|-.|++. ..|.||+-.. +.|.++++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM---DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe---CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 355566666665433 45556664 3478998764 66888999999999999999998765
Done!